Citrus Sinensis ID: 034248


Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100
MHQEIPKMETQKIQQEKQSSPVAPTPAMTSCRKKKKDDATFLEDLKDHIDEFVNASMEEHKTCFSKTIKKMFGMSKVVAERNANTQEVESSLPLQTTISD
cccccccHHHHHHHHcccccccccccccHHHHHccccccHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHcHHHHHHHHHHcHHHHHHcccccccccc
ccccccccccccccccccccccccccccHHHcccccccccHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHccHHHHHHccHcHHHHHccccccccccc
MHQEIPKMETQKIQqekqsspvaptpamtscrkkkkddATFLEDLKDHIDEFVNASMEEHKTCFSKTIKKMFGMSKVVAERNantqevesslplqttisd
mhqeipkmetqkiqqekqsspvaptpamtscrkKKKDDATFLEDLKDHIDEFVNASMEEHKTCFSKTIKKMFGMSKVVAErnantqevesslplqttisd
MHQEIPKMETQKIQQEKQSSPVAPTPAMTSCRKKKKDDATFLEDLKDHIDEFVNASMEEHKTCFSKTIKKMFGMSKVVAERNANTQEVESSLPLQTTISD
*******************************************DLKDHIDEFVNASMEEHKTCFSKTIKKMFGM**************************
***************************************TFLEDLKDHIDEFVNASMEEHKTCFSKTIKKMFGMS******************LQT****
************************************DDATFLEDLKDHIDEFVNASMEEHKTCFSKTIKKMFGMSKVVAERNANTQEVESSLPLQTTISD
*************************************DATFLEDLKDHIDEFVNASMEEHKTCFSKTIKKMFGMSKVVAERN******************
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iiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiii
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MHQEIPKMETQKIQQEKQSSPVAPTPAMTSCRKKKKDDATFLEDLKDHIDEFVNASMEEHKTCFSKTIKKMFGMSKVVAERNANTQEVESSLPLQTTISD
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST ?

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query100
22408035393 predicted protein [Populus trichocarpa] 0.92 0.989 0.760 2e-34
35947533693 PREDICTED: uncharacterized protein LOC10 0.93 1.0 0.720 8e-33
297741465 210 unnamed protein product [Vitis vinifera] 0.93 0.442 0.720 8e-33
14776732093 hypothetical protein VITISV_033595 [Viti 0.93 1.0 0.709 4e-32
35172704894 uncharacterized protein LOC100527051 [Gl 0.93 0.989 0.712 6e-31
22406655388 predicted protein [Populus trichocarpa] 0.88 1.0 0.709 1e-30
11545504395 Os03g0724500 [Oryza sativa Japonica Grou 0.92 0.968 0.680 6e-29
35711734895 PREDICTED: uncharacterized protein LOC10 0.92 0.968 0.659 4e-28
38849267091 unknown [Lotus japonicus] 0.9 0.989 0.691 5e-28
38851592391 unknown [Lotus japonicus] 0.9 0.989 0.691 6e-28
>gi|224080353|ref|XP_002306109.1| predicted protein [Populus trichocarpa] gi|118482343|gb|ABK93095.1| unknown [Populus trichocarpa] gi|222849073|gb|EEE86620.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  149 bits (376), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 70/92 (76%), Positives = 82/92 (89%)

Query: 8  METQKIQQEKQSSPVAPTPAMTSCRKKKKDDATFLEDLKDHIDEFVNASMEEHKTCFSKT 67
          METQK Q  KQ SP A  PA+TSCR+KKKDDATFLEDLKDHIDEF++ASM+EHK CF+KT
Sbjct: 1  METQKSQPAKQQSPAALDPAITSCRRKKKDDATFLEDLKDHIDEFIHASMDEHKDCFTKT 60

Query: 68 IKKMFGMSKVVAERNANTQEVESSLPLQTTIS 99
          IKKMFGMSK+VAER+ + +EVESSLPLQTT++
Sbjct: 61 IKKMFGMSKIVAERSGDAKEVESSLPLQTTVA 92




Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359475336|ref|XP_003631661.1| PREDICTED: uncharacterized protein LOC100853783 isoform 1 [Vitis vinifera] gi|359475338|ref|XP_003631662.1| PREDICTED: uncharacterized protein LOC100853783 isoform 2 [Vitis vinifera] Back     alignment and taxonomy information
>gi|297741465|emb|CBI32596.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|147767320|emb|CAN68998.1| hypothetical protein VITISV_033595 [Vitis vinifera] Back     alignment and taxonomy information
>gi|351727048|ref|NP_001237915.1| uncharacterized protein LOC100527051 [Glycine max] gi|255631448|gb|ACU16091.1| unknown [Glycine max] Back     alignment and taxonomy information
>gi|224066553|ref|XP_002302133.1| predicted protein [Populus trichocarpa] gi|222843859|gb|EEE81406.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|115455043|ref|NP_001051122.1| Os03g0724500 [Oryza sativa Japonica Group] gi|37718771|gb|AAR01643.1| expressed protein [Oryza sativa Japonica Group] gi|113549593|dbj|BAF13036.1| Os03g0724500 [Oryza sativa Japonica Group] Back     alignment and taxonomy information
>gi|357117348|ref|XP_003560432.1| PREDICTED: uncharacterized protein LOC100841996 [Brachypodium distachyon] Back     alignment and taxonomy information
>gi|388492670|gb|AFK34401.1| unknown [Lotus japonicus] Back     alignment and taxonomy information
>gi|388515923|gb|AFK46023.1| unknown [Lotus japonicus] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query100
TAIR|locus:207809790 AT3G05570 "AT3G05570" [Arabido 0.88 0.977 0.642 7.3e-27
TAIR|locus:50500656986 AT4G39235 "AT4G39235" [Arabido 0.84 0.976 0.674 7.3e-27
TAIR|locus:2049384104 AT2G21640 "AT2G21640" [Arabido 0.89 0.855 0.494 5.8e-18
TAIR|locus:2078097 AT3G05570 "AT3G05570" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 302 (111.4 bits), Expect = 7.3e-27, P = 7.3e-27
 Identities = 61/95 (64%), Positives = 75/95 (78%)

Query:     8 METQKIQQEKQSSPVAPTPAMTSCRKKKKDDATFLEDLKDHIDEFVNASMEEHKTCFSKT 67
             METQK Q E   +P  P PA +SCRKK KDDA FLED+KDHID+F+NASM++HK CF+KT
Sbjct:     1 METQKTQAE---NP--PKPATSSCRKKTKDDANFLEDVKDHIDDFINASMDDHKNCFNKT 55

Query:    68 IKKMFGMSKVVAERNANTQE--VESSLPLQTTISD 100
             IKKMFG+SK VA++  +  +  VES LPLQTT+SD
Sbjct:    56 IKKMFGLSKAVADKQQSEAKGGVESYLPLQTTVSD 90




GO:0003674 "molecular_function" evidence=ND
GO:0008150 "biological_process" evidence=ND
TAIR|locus:505006569 AT4G39235 "AT4G39235" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2049384 AT2G21640 "AT2G21640" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!


Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Fail to connect to STRING server


Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Conserved Domains Detected by HHsearch ?

No hit with probability above 80.00


Homologous Structure Templates

Structure Templates Detected by BLAST ?

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

No hit with e-value below 0.005

Structure Templates Detected by HHsearch ?

No hit with probability above 80.00


Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

No hit with probability above 80.00