Citrus Sinensis ID: 034248
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
Close Homologs for Annotation Transfer
Close Homologs in the Non-Redundant Database Detected by BLAST 
Original result of BLAST against Nonredundant Database
GI ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 100 | ||||||
| 224080353 | 93 | predicted protein [Populus trichocarpa] | 0.92 | 0.989 | 0.760 | 2e-34 | |
| 359475336 | 93 | PREDICTED: uncharacterized protein LOC10 | 0.93 | 1.0 | 0.720 | 8e-33 | |
| 297741465 | 210 | unnamed protein product [Vitis vinifera] | 0.93 | 0.442 | 0.720 | 8e-33 | |
| 147767320 | 93 | hypothetical protein VITISV_033595 [Viti | 0.93 | 1.0 | 0.709 | 4e-32 | |
| 351727048 | 94 | uncharacterized protein LOC100527051 [Gl | 0.93 | 0.989 | 0.712 | 6e-31 | |
| 224066553 | 88 | predicted protein [Populus trichocarpa] | 0.88 | 1.0 | 0.709 | 1e-30 | |
| 115455043 | 95 | Os03g0724500 [Oryza sativa Japonica Grou | 0.92 | 0.968 | 0.680 | 6e-29 | |
| 357117348 | 95 | PREDICTED: uncharacterized protein LOC10 | 0.92 | 0.968 | 0.659 | 4e-28 | |
| 388492670 | 91 | unknown [Lotus japonicus] | 0.9 | 0.989 | 0.691 | 5e-28 | |
| 388515923 | 91 | unknown [Lotus japonicus] | 0.9 | 0.989 | 0.691 | 6e-28 |
| >gi|224080353|ref|XP_002306109.1| predicted protein [Populus trichocarpa] gi|118482343|gb|ABK93095.1| unknown [Populus trichocarpa] gi|222849073|gb|EEE86620.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 149 bits (376), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 70/92 (76%), Positives = 82/92 (89%)
Query: 8 METQKIQQEKQSSPVAPTPAMTSCRKKKKDDATFLEDLKDHIDEFVNASMEEHKTCFSKT 67
METQK Q KQ SP A PA+TSCR+KKKDDATFLEDLKDHIDEF++ASM+EHK CF+KT
Sbjct: 1 METQKSQPAKQQSPAALDPAITSCRRKKKDDATFLEDLKDHIDEFIHASMDEHKDCFTKT 60
Query: 68 IKKMFGMSKVVAERNANTQEVESSLPLQTTIS 99
IKKMFGMSK+VAER+ + +EVESSLPLQTT++
Sbjct: 61 IKKMFGMSKIVAERSGDAKEVESSLPLQTTVA 92
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359475336|ref|XP_003631661.1| PREDICTED: uncharacterized protein LOC100853783 isoform 1 [Vitis vinifera] gi|359475338|ref|XP_003631662.1| PREDICTED: uncharacterized protein LOC100853783 isoform 2 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
| >gi|297741465|emb|CBI32596.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
| >gi|147767320|emb|CAN68998.1| hypothetical protein VITISV_033595 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
| >gi|351727048|ref|NP_001237915.1| uncharacterized protein LOC100527051 [Glycine max] gi|255631448|gb|ACU16091.1| unknown [Glycine max] | Back alignment and taxonomy information |
|---|
| >gi|224066553|ref|XP_002302133.1| predicted protein [Populus trichocarpa] gi|222843859|gb|EEE81406.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
| >gi|115455043|ref|NP_001051122.1| Os03g0724500 [Oryza sativa Japonica Group] gi|37718771|gb|AAR01643.1| expressed protein [Oryza sativa Japonica Group] gi|113549593|dbj|BAF13036.1| Os03g0724500 [Oryza sativa Japonica Group] | Back alignment and taxonomy information |
|---|
| >gi|357117348|ref|XP_003560432.1| PREDICTED: uncharacterized protein LOC100841996 [Brachypodium distachyon] | Back alignment and taxonomy information |
|---|
| >gi|388492670|gb|AFK34401.1| unknown [Lotus japonicus] | Back alignment and taxonomy information |
|---|
| >gi|388515923|gb|AFK46023.1| unknown [Lotus japonicus] | Back alignment and taxonomy information |
|---|
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST 
Original result of BLAST against Gene Ontology (AMIGO)
ID ![]() |
Alignment graph ![]() |
Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 100 | ||||||
| TAIR|locus:2078097 | 90 | AT3G05570 "AT3G05570" [Arabido | 0.88 | 0.977 | 0.642 | 7.3e-27 | |
| TAIR|locus:505006569 | 86 | AT4G39235 "AT4G39235" [Arabido | 0.84 | 0.976 | 0.674 | 7.3e-27 | |
| TAIR|locus:2049384 | 104 | AT2G21640 "AT2G21640" [Arabido | 0.89 | 0.855 | 0.494 | 5.8e-18 |
| TAIR|locus:2078097 AT3G05570 "AT3G05570" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 302 (111.4 bits), Expect = 7.3e-27, P = 7.3e-27
Identities = 61/95 (64%), Positives = 75/95 (78%)
Query: 8 METQKIQQEKQSSPVAPTPAMTSCRKKKKDDATFLEDLKDHIDEFVNASMEEHKTCFSKT 67
METQK Q E +P P PA +SCRKK KDDA FLED+KDHID+F+NASM++HK CF+KT
Sbjct: 1 METQKTQAE---NP--PKPATSSCRKKTKDDANFLEDVKDHIDDFINASMDDHKNCFNKT 55
Query: 68 IKKMFGMSKVVAERNANTQE--VESSLPLQTTISD 100
IKKMFG+SK VA++ + + VES LPLQTT+SD
Sbjct: 56 IKKMFGLSKAVADKQQSEAKGGVESYLPLQTTVSD 90
|
|
| TAIR|locus:505006569 AT4G39235 "AT4G39235" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
| TAIR|locus:2049384 AT2G21640 "AT2G21640" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Ezypred Server 
Original result from Ezypred Server
Fail to connect to Ezypred Server
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING 
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against CDD database part I
Conserved Domains Detected by HHsearch 
Original result of HHsearch against CDD database
No hit with probability above 80.00
Homologous Structure Templates
Structure Templates Detected by BLAST 
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST 
Original result of RPS-BLAST against PDB70 database
No hit with e-value below 0.005
Structure Templates Detected by HHsearch 
Original result of HHsearch against PDB70 database
No hit with probability above 80.00
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against SCOP70(version1.75) database
No hit with e-value below 0.005
Homologous Domains Detected by HHsearch 
Original result of HHsearch against SCOP70(version1.75) database
No hit with probability above 80.00