Citrus Sinensis ID: 034267

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100
Protein Sequence
MSFNSMLRQRLFARFGSTHAGPSRWTTPGHQEKPNGYLFNRTPPPPGQSRKWEDWELPCYITSFLTVVILGVGLNAKPDLTIETWAHQKALERLQMEKSE
Secondary Structure (PSIPRED)
ccHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHHHHcccccccccccccccccccccccEEcccccccccccccccccHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHccc
Coil and Loop (DISEMBL)
MSFNSMLRQRLFARfgsthagpsrwttpghqekpngylfnrtppppgqsrkwedwelpcyitSFLTVVILGvglnakpdltIETWAHQKALERLQMEKSE
Flexible Loop (DISEMBL)
MSFNSMLRQRLFArfgsthagpsrwttpghqEKPNGYLFNRTPPPPGQSRKWEDWELPCYITSFLTVVILGVGLNAKPDLTIETWAHQKALErlqmekse
Low Complexity Region (SEG)
MSFNSMLRQRLFARFGSTHAGPSRWTTPGHQEKPNGYLFNRTPPPPGQSRKWEDWELPCYITSFLTVVILGVGLNAKPDLTIETWAHQKALERLQMEKSE
Disordered region (IsUnstruct)
**************************************************KWEDWELPCYITSFLTVVILGVGLNAKPDLTIETWAHQ************
Disordered Region (DISOPRED)
***********************************GYLFNRTP******RKWEDWELPCYITSFLTVVILGVGLNAKPDLTIETWAHQK***********
Disordered Region (DISEMBL)
MSFNSMLRQRLFARFGSTHAGPSRWTTPGHQEKPNGYLFNRTPPPPGQSRKWEDWELPCYITSFLTVVILGVGLNAKPDLTIETWAHQKALERLQMEKSE
Disordered Region (DISPRO)
*******************************EKPNGYLFNRTPPPPGQSRKWEDWELPCYITSFLTVVILGVGLNAKPDLTIETWAHQKALER*******
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MSFNSMLRQRLFARFGSTHAGPSRWTTPGHQEKPNGYLFNRTPPPPGQSRKWEDWELPCYITSFLTVVILGVGLNAKPDLTIETWAHQKALERLQMEKSE
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	100
297820578	589	hypothetical protein ARALYDRAFT_324272 [	0.92	0.156	0.836	4e-43
4678268	614	putative protein [Arabidopsis thaliana]	0.92	0.149	0.826	9e-43
15227917	114	uncharacterized protein [Arabidopsis tha	0.92	0.807	0.836	2e-41
313586599	118	hypothetical protein 32 [Hevea brasilien	0.95	0.805	0.816	3e-41
18410807	114	uncharacterized protein [Arabidopsis tha	0.92	0.807	0.826	3e-40
255571610	115	conserved hypothetical protein [Ricinus	0.97	0.843	0.79	1e-39
297739711	784	unnamed protein product [Vitis vinifera]	0.93	0.118	0.75	1e-39
356500453	128	PREDICTED: uncharacterized protein LOC10	0.98	0.765	0.742	1e-38
224137962	114	predicted protein [Populus trichocarpa]	0.95	0.833	0.765	2e-38
449466101	108	PREDICTED: uncharacterized protein LOC10	0.93	0.861	0.791	3e-38

>gi|297820578|ref|XP_002878172.1| hypothetical protein ARALYDRAFT_324272 [Arabidopsis lyrata subsp. lyrata] gi|297324010|gb|EFH54431.1| hypothetical protein ARALYDRAFT_324272 [Arabidopsis lyrata subsp. lyrata]

 Score =  178 bits (451), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 77/92 (83%), Positives = 83/92 (90%)

Query: 7   LRQRLFARFGSTHAGPSRWTTPGHQEKPNGYLFNRTPPPPGQSRKWEDWELPCYITSFLT 66
           LR R+  R GST AGPSRW TPGH+E+P GY  NRTPPPPGQSRKWEDWELPCYITSFLT
Sbjct: 489 LRNRIHFRSGSTSAGPSRWATPGHEERPKGYFMNRTPPPPGQSRKWEDWELPCYITSFLT 548

Query: 67  VVILGVGLNAKPDLTIETWAHQKALERLQMEK 98
           +VILGVGLNAKPDL+IETWAHQKALERL+MEK
Sbjct: 549 IVILGVGLNAKPDLSIETWAHQKALERLEMEK 580

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|4678268|emb|CAB41176.1| putative protein [Arabidopsis thaliana]

 Score =  177 bits (448), Expect = 9e-43,   Method: Composition-based stats.
 Identities = 76/92 (82%), Positives = 82/92 (89%)

Query: 7   LRQRLFARFGSTHAGPSRWTTPGHQEKPNGYLFNRTPPPPGQSRKWEDWELPCYITSFLT 66
           LR R+  R GST  GPSRW TPGH+E+P GY  NRTPPPPGQSRKWEDWELPCYITSFLT
Sbjct: 514 LRNRIHFRSGSTSTGPSRWATPGHEERPKGYFMNRTPPPPGQSRKWEDWELPCYITSFLT 573

Query: 67  VVILGVGLNAKPDLTIETWAHQKALERLQMEK 98
           +VILGVGLNAKPDL+IETWAHQKALERL+MEK
Sbjct: 574 IVILGVGLNAKPDLSIETWAHQKALERLEMEK 605

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15227917|ref|NP_181760.1| uncharacterized protein [Arabidopsis thaliana] gi|297824191|ref|XP_002879978.1| hypothetical protein ARALYDRAFT_903579 [Arabidopsis lyrata subsp. lyrata] gi|4567303|gb|AAD23714.1| unknown protein [Arabidopsis thaliana] gi|18176258|gb|AAL60012.1| unknown protein [Arabidopsis thaliana] gi|20465315|gb|AAM20061.1| unknown protein [Arabidopsis thaliana] gi|297325817|gb|EFH56237.1| hypothetical protein ARALYDRAFT_903579 [Arabidopsis lyrata subsp. lyrata] gi|330255010|gb|AEC10104.1| uncharacterized protein [Arabidopsis thaliana]

 Score =  172 bits (437), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 77/92 (83%), Positives = 84/92 (91%)

Query: 7   LRQRLFARFGSTHAGPSRWTTPGHQEKPNGYLFNRTPPPPGQSRKWEDWELPCYITSFLT 66
           LR R+F+R GST AGPSRW TPGH+E+P GY  NRTPP PGQSRKWEDWELPCYITSFLT
Sbjct: 14  LRNRIFSRSGSTSAGPSRWATPGHEERPKGYFMNRTPPAPGQSRKWEDWELPCYITSFLT 73

Query: 67  VVILGVGLNAKPDLTIETWAHQKALERLQMEK 98
           +VILGVGLNAKPDL+IETWAHQKALERL+MEK
Sbjct: 74  IVILGVGLNAKPDLSIETWAHQKALERLEMEK 105

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|313586599|gb|ADR71310.1| hypothetical protein 32 [Hevea brasiliensis]

 Score =  172 bits (435), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 80/98 (81%), Positives = 88/98 (89%), Gaps = 3/98 (3%)

Query: 4   NSMLRQRLFARF---GSTHAGPSRWTTPGHQEKPNGYLFNRTPPPPGQSRKWEDWELPCY 60
           +SMLRQRL +     G   AGPSRWT+PGH+E+P GYLFNRTPPPPGQSRKWEDWELPCY
Sbjct: 11  SSMLRQRLASSLRTRGGAAAGPSRWTSPGHEERPKGYLFNRTPPPPGQSRKWEDWELPCY 70

Query: 61  ITSFLTVVILGVGLNAKPDLTIETWAHQKALERLQMEK 98
           ITSFLT+VILGVGLNAKPDL+IETWAHQKALERL+MEK
Sbjct: 71  ITSFLTIVILGVGLNAKPDLSIETWAHQKALERLEMEK 108

Source: Hevea brasiliensis

Species: Hevea brasiliensis

Genus: Hevea

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18410807|ref|NP_567054.1| uncharacterized protein [Arabidopsis thaliana] gi|21592369|gb|AAM64320.1| unknown [Arabidopsis thaliana] gi|22531245|gb|AAM97126.1| expressed protein [Arabidopsis thaliana] gi|24899847|gb|AAN65138.1| expressed protein [Arabidopsis thaliana] gi|332646179|gb|AEE79700.1| uncharacterized protein [Arabidopsis thaliana]

 Score =  168 bits (426), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 76/92 (82%), Positives = 82/92 (89%)

Query: 7   LRQRLFARFGSTHAGPSRWTTPGHQEKPNGYLFNRTPPPPGQSRKWEDWELPCYITSFLT 66
           LR R+  R GST  GPSRW TPGH+E+P GY  NRTPPPPGQSRKWEDWELPCYITSFLT
Sbjct: 14  LRNRIHFRSGSTSTGPSRWATPGHEERPKGYFMNRTPPPPGQSRKWEDWELPCYITSFLT 73

Query: 67  VVILGVGLNAKPDLTIETWAHQKALERLQMEK 98
           +VILGVGLNAKPDL+IETWAHQKALERL+MEK
Sbjct: 74  IVILGVGLNAKPDLSIETWAHQKALERLEMEK 105

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255571610|ref|XP_002526751.1| conserved hypothetical protein [Ricinus communis] gi|223533940|gb|EEF35665.1| conserved hypothetical protein [Ricinus communis]

 Score =  166 bits (421), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 79/100 (79%), Positives = 86/100 (86%), Gaps = 3/100 (3%)

Query: 2   SFNSMLRQRLFARF---GSTHAGPSRWTTPGHQEKPNGYLFNRTPPPPGQSRKWEDWELP 58
           + ++MLRQRL +     G   AGPSRWT+PGH EKP GYLFNRTPP PGQSRKWEDWELP
Sbjct: 9   AASTMLRQRLSSTLRTRGGAAAGPSRWTSPGHDEKPKGYLFNRTPPAPGQSRKWEDWELP 68

Query: 59  CYITSFLTVVILGVGLNAKPDLTIETWAHQKALERLQMEK 98
           CYITSFLT+VILGVGLNAKPDLTIETWAHQKALERL+ EK
Sbjct: 69  CYITSFLTIVILGVGLNAKPDLTIETWAHQKALERLESEK 108

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297739711|emb|CBI29893.3| unnamed protein product [Vitis vinifera]

 Score =  166 bits (420), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 72/96 (75%), Positives = 81/96 (84%), Gaps = 3/96 (3%)

Query: 7   LRQRLFARF---GSTHAGPSRWTTPGHQEKPNGYLFNRTPPPPGQSRKWEDWELPCYITS 63
           LR RL       G   +GPSRWT+PGHQ++PNGYLFNRTP PPGQ+R+WEDWELPCY+TS
Sbjct: 686 LRNRLLPSLRTRGGGESGPSRWTSPGHQDRPNGYLFNRTPLPPGQTRQWEDWELPCYVTS 745

Query: 64  FLTVVILGVGLNAKPDLTIETWAHQKALERLQMEKS 99
           FLTV+ILGVGL+AKPDLTIETWAHQKALERL  E S
Sbjct: 746 FLTVIILGVGLSAKPDLTIETWAHQKALERLASESS 781

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356500453|ref|XP_003519046.1| PREDICTED: uncharacterized protein LOC100817993 [Glycine max]

 Score =  163 bits (412), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 75/101 (74%), Positives = 87/101 (86%), Gaps = 3/101 (2%)

Query: 2   SFNSMLRQRLFARF---GSTHAGPSRWTTPGHQEKPNGYLFNRTPPPPGQSRKWEDWELP 58
           S ++ LR+RL       G   +GPSRWT+PGH+E+P GYLFNRTPPPPGQSRKWEDWELP
Sbjct: 9   SASAALRRRLQQSLRTRGGAESGPSRWTSPGHEERPKGYLFNRTPPPPGQSRKWEDWELP 68

Query: 59  CYITSFLTVVILGVGLNAKPDLTIETWAHQKALERLQMEKS 99
           CY+TSFLT+VILGVGLNAKPDLTIETWAH+KALERL++E S
Sbjct: 69  CYVTSFLTIVILGVGLNAKPDLTIETWAHEKALERLKIENS 109

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224137962|ref|XP_002322695.1| predicted protein [Populus trichocarpa] gi|118483767|gb|ABK93776.1| unknown [Populus trichocarpa] gi|222867325|gb|EEF04456.1| predicted protein [Populus trichocarpa]

 Score =  162 bits (410), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 75/98 (76%), Positives = 84/98 (85%), Gaps = 3/98 (3%)

Query: 4   NSMLRQRLFARF---GSTHAGPSRWTTPGHQEKPNGYLFNRTPPPPGQSRKWEDWELPCY 60
           +SMLR R+ +     G   AGPSRW +PGH+E+P G+  NRTPPPPG+SRKWEDWELPCY
Sbjct: 7   SSMLRHRISSALRTRGGAKAGPSRWKSPGHEEQPKGHFLNRTPPPPGESRKWEDWELPCY 66

Query: 61  ITSFLTVVILGVGLNAKPDLTIETWAHQKALERLQMEK 98
           ITSFLT+VILGVGLNAKPDLTIETWAHQKALERLQMEK
Sbjct: 67  ITSFLTIVILGVGLNAKPDLTIETWAHQKALERLQMEK 104

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449466101|ref|XP_004150765.1| PREDICTED: uncharacterized protein LOC101209235 [Cucumis sativus] gi|449508346|ref|XP_004163288.1| PREDICTED: uncharacterized LOC101209235 [Cucumis sativus] gi|449508348|ref|XP_004163289.1| PREDICTED: uncharacterized protein LOC101232371 [Cucumis sativus]

 Score =  162 bits (409), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 76/96 (79%), Positives = 83/96 (86%), Gaps = 3/96 (3%)

Query: 6  MLRQRLFARF---GSTHAGPSRWTTPGHQEKPNGYLFNRTPPPPGQSRKWEDWELPCYIT 62
          MLR RL +     G   AG SRWT+PGH+E+P GYLFNRTP PPGQSRKWEDWELPCY+T
Sbjct: 1  MLRHRLLSSLRTRGGAAAGRSRWTSPGHEERPKGYLFNRTPLPPGQSRKWEDWELPCYVT 60

Query: 63 SFLTVVILGVGLNAKPDLTIETWAHQKALERLQMEK 98
          SFLT+VILGVGLNAKPDLTIETWAHQKALERL+MEK
Sbjct: 61 SFLTIVILGVGLNAKPDLTIETWAHQKALERLEMEK 96

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	100
TAIR|locus:2053824	114	AT2G42310 "AT2G42310" [Arabido	0.92	0.807	0.836	1.7e-41
TAIR|locus:505006403	114	AT3G57785 "AT3G57785" [Arabido	0.92	0.807	0.826	7.5e-41
UNIPROTKB|G4MK84	111	MGG_02490 "Uncharacterized pro	0.86	0.774	0.358	2.9e-07
ASPGD|ASPL0000010453	113	AN3655 [Emericella nidulans (t	0.65	0.575	0.382	7.8e-07

TAIR|locus:2053824 AT2G42310 "AT2G42310" [Arabidopsis thaliana (taxid:3702)]

 Score = 440 (159.9 bits), Expect = 1.7e-41, P = 1.7e-41
 Identities = 77/92 (83%), Positives = 84/92 (91%)

Query:     7 LRQRLFARFGSTHAGPSRWTTPGHQEKPNGYLFNRTPPPPGQSRKWEDWELPCYITSFLT 66
             LR R+F+R GST AGPSRW TPGH+E+P GY  NRTPP PGQSRKWEDWELPCYITSFLT
Sbjct:    14 LRNRIFSRSGSTSAGPSRWATPGHEERPKGYFMNRTPPAPGQSRKWEDWELPCYITSFLT 73

Query:    67 VVILGVGLNAKPDLTIETWAHQKALERLQMEK 98
             +VILGVGLNAKPDL+IETWAHQKALERL+MEK
Sbjct:    74 IVILGVGLNAKPDLSIETWAHQKALERLEMEK 105

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

GO:0005739 "mitochondrion" evidence=IDA

GO:0005747 "mitochondrial respiratory chain complex I" evidence=IDA

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=RCA

GO:0009853 "photorespiration" evidence=RCA

GO:0051788 "response to misfolded protein" evidence=RCA

GO:0080129 "proteasome core complex assembly" evidence=RCA

TAIR|locus:505006403 AT3G57785 "AT3G57785" [Arabidopsis thaliana (taxid:3702)]

 Score = 434 (157.8 bits), Expect = 7.5e-41, P = 7.5e-41
 Identities = 76/92 (82%), Positives = 82/92 (89%)

Query:     7 LRQRLFARFGSTHAGPSRWTTPGHQEKPNGYLFNRTPPPPGQSRKWEDWELPCYITSFLT 66
             LR R+  R GST  GPSRW TPGH+E+P GY  NRTPPPPGQSRKWEDWELPCYITSFLT
Sbjct:    14 LRNRIHFRSGSTSTGPSRWATPGHEERPKGYFMNRTPPPPGQSRKWEDWELPCYITSFLT 73

Query:    67 VVILGVGLNAKPDLTIETWAHQKALERLQMEK 98
             +VILGVGLNAKPDL+IETWAHQKALERL+MEK
Sbjct:    74 IVILGVGLNAKPDLSIETWAHQKALERLEMEK 105

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

GO:0005739 "mitochondrion" evidence=IDA

GO:0005747 "mitochondrial respiratory chain complex I" evidence=IDA

UNIPROTKB|G4MK84 MGG_02490 "Uncharacterized protein" [Magnaporthe oryzae 70-15 (taxid:242507)]

 Score = 117 (46.2 bits), Expect = 2.9e-07, P = 2.9e-07
 Identities = 33/92 (35%), Positives = 48/92 (52%)

Query:     7 LRQRLFARFGSTHAGPSRWTTPGHQ-EKPNGYLFNRTPPPPGQSRKWEDWELPCYITSFL 65
             LRQ    R  ST   P R  + G + + P G+LF      PG+  + E WE   YI  F 
Sbjct:    13 LRQTTQTRTLSTT--PRRLASHGPEYDPPTGWLFG---VKPGEKYQKEGWENIMYIGFFG 67

Query:    66 TVVILGVGLNAKPDLTIETWAHQKALERLQME 97
             +  +  V +  KPD +I+TWA ++A  RL++E
Sbjct:    68 SFAVFTVAMCFKPDTSIQTWALEEARRRLEVE 99

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

ASPGD|ASPL0000010453 AN3655 [Emericella nidulans (taxid:162425)]

 Score = 113 (44.8 bits), Expect = 7.8e-07, P = 7.8e-07
 Identities = 26/68 (38%), Positives = 36/68 (52%)

Query:    30 HQEKPNGYLFNRTPPPPGQSRKWEDWELPCYITSFLTVVILGVGLNAKPDLTIETWAHQK 89
             H + P GYLF      PGQ    E WE   Y     ++++ GV    KPD +I+TWA ++
Sbjct:    40 HYDPPTGYLFG---VKPGQKYVKEGWENIWYYGFIGSLLVAGVAYVFKPDTSIQTWALEE 96

Query:    90 ALERLQME 97
             A  RL+ E
Sbjct:    97 ARRRLEAE 104


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.318   0.134   0.438    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      100       100   0.00091  102 3  11 22  0.41    30
                                                     29  0.47    31


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  4
  No. of states in DFA:  589 (63 KB)
  Total size of DFA:  140 KB (2085 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  11.65u 0.14s 11.79t   Elapsed:  00:00:00
  Total cpu time:  11.65u 0.14s 11.79t   Elapsed:  00:00:00
  Start:  Fri May 10 19:25:52 2013   End:  Fri May 10 19:25:52 2013

GO:0008150 "biological_process" evidence=ND

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	fgenesh1_pm.C_scaffold_5001816	annotation not avaliable (589 aa)
		(Arabidopsis lyrata)
Predicted Functional Partners:
	Al_scaffold_0004_2632	annotation not avaliable (366 aa)			•						0.486

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	100
PLN02453	105	PLN02453, PLN02453, complex I subunit	1e-54
pfam10183	101	pfam10183, ESSS, ESSS subunit of NADH:ubiquinone o	1e-33

>gnl|CDD|178072 PLN02453, PLN02453, complex I subunit

 Score =  164 bits (417), Expect = 1e-54
 Identities = 72/95 (75%), Positives = 78/95 (82%), Gaps = 1/95 (1%)

Query: 5   SMLRQRLFARFGSTHAG-PSRWTTPGHQEKPNGYLFNRTPPPPGQSRKWEDWELPCYITS 63
            MLR R  ++  S  AG P RW  PGH+E PNGYLFN TPPPPGQSRKWEDWELPCYITS
Sbjct: 10  RMLRGRQRSQLRSRGAGGPGRWFAPGHEEGPNGYLFNETPPPPGQSRKWEDWELPCYITS 69

Query: 64  FLTVVILGVGLNAKPDLTIETWAHQKALERLQMEK 98
           FLT+VILGVGLNAKPD  IETWAHQKALERL+ E+
Sbjct: 70  FLTIVILGVGLNAKPDTRIETWAHQKALERLEAEE 104

Length = 105

>gnl|CDD|220620 pfam10183, ESSS, ESSS subunit of NADH:ubiquinone oxidoreductase (complex I)

 Score =  111 bits (279), Expect = 1e-33
 Identities = 53/97 (54%), Positives = 64/97 (65%), Gaps = 4/97 (4%)

Query: 3   FNSMLRQRLFARFGSTHAGPSRWTTPGH--QEKPNGYLFNRTPPPPGQSRKWEDWELPCY 60
             +  R R      S   G +R  + GH   E+PNG LFN+ PPPPG+ RKWEDWELP Y
Sbjct: 6   ARAAARGREGGGSSSG--GAARRASAGHEEHERPNGRLFNKNPPPPGEKRKWEDWELPFY 63

Query: 61  ITSFLTVVILGVGLNAKPDLTIETWAHQKALERLQME 97
              FLT+VILGVGLN KPD TI+TWAH++AL R + E
Sbjct: 64  FGFFLTLVILGVGLNYKPDTTIQTWAHEEALRRREAE 100

This subunit is part of the mitochondrial NADH:ubiquinone oxidoreductase (complex I). It carries mitochondrial import sequences. Length = 101

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	100
PLN02453	105	complex I subunit	100.0
PF10183	105	ESSS: ESSS subunit of NADH:ubiquinone oxidoreducta	99.97
PF14990	47	DUF4516: Domain of unknown function (DUF4516)	83.43

>PLN02453 complex I subunit

Probab=100.00  E-value=3.5e-54  Score=304.88  Aligned_cols=96  Identities=74%  Similarity=1.312  Sum_probs=92.0

Q ss_pred             chHHHHHHhh---hhhcCCCCCCCCCCCCCCCCCCCCccccccCCCCCCCCCCccccchhHHHHHHHHHHHHHhHhhcCC
Q 034267            2 SFNSMLRQRL---FARFGSTHAGPSRWTTPGHQEKPNGYLFNRTPPPPGQSRKWEDWELPCYITSFLTVVILGVGLNAKP   78 (100)
Q Consensus         2 ~~~~~lr~~~---~r~rGg~~~g~~r~~s~g~~e~P~G~LFge~P~~PGqkrk~E~WE~p~Y~~~~g~~v~l~v~l~~KP   78 (100)
                      .+++|||+|+   .|+||||  |+++|.+|||+|+||||||||+||+|||+|||||||+|||++||+++||++|+|+|||
T Consensus         7 ~a~~~lr~~~~~~~r~rggg--~~g~w~~pG~~e~p~G~LFg~~Pp~PGq~rkwEdWE~p~Y~~~~~t~vil~Vgl~aKP   84 (105)
T PLN02453          7 AASRMLRGRQRSQLRSRGAG--GPGRWFAPGHEEGPNGYLFNETPPPPGQSRKWEDWELPCYITSFLTIVILGVGLNAKP   84 (105)
T ss_pred             HHHHHHHHHHhhhhccccCC--CCCCCcCCCccCCCCeeeeCCCCCCCCcccccccchhhHHHHHHHHHHHHheeeeccC
Confidence            4679999999   5899987  8889999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCHHHHHHHHHHHHHhhccC
Q 034267           79 DLTIETWAHQKALERLQMEKS   99 (100)
Q Consensus        79 DtsIqtWA~~eA~~RLe~e~~   99 (100)
                      |||||||||+||++|||+|++
T Consensus        85 DtsIqtWA~~eA~~RLe~e~~  105 (105)
T PLN02453         85 DTRIETWAHQKALERLEAEEL  105 (105)
T ss_pred             CCcHHHHHHHHHHHHHHhccC
Confidence            999999999999999999984

>PF10183 ESSS: ESSS subunit of NADH:ubiquinone oxidoreductase (complex I) ; InterPro: IPR019329 NADH:ubiquinone oxidoreductase (complex I) (1

Probab=99.97  E-value=3.8e-31  Score=183.53  Aligned_cols=76  Identities=43%  Similarity=0.864  Sum_probs=67.9

Q ss_pred             CCCCCCCCC---CCCCCCccccccCCCCCCCCCCccccchhHHHHHHHHHHHHHhHhhcCCCCCHHHHHHHHHHHHHhh
Q 034267           21 GPSRWTTPG---HQEKPNGYLFNRTPPPPGQSRKWEDWELPCYITSFLTVVILGVGLNAKPDLTIETWAHQKALERLQM   96 (100)
Q Consensus        21 g~~r~~s~g---~~e~P~G~LFge~P~~PGqkrk~E~WE~p~Y~~~~g~~v~l~v~l~~KPDtsIqtWA~~eA~~RLe~   96 (100)
                      ..++...++   ++++|||+||+++|++|||+++||+||++||++|++++|+++|+++|||||||++||++||.+||+.
T Consensus        22 ~~a~~~~~~~~~~~~~p~g~l~~~~p~~~G~~~d~e~we~~~f~~~~~~~v~~~~~~~y~PD~~i~~WA~rEA~~rl~~  100 (105)
T PF10183_consen   22 SAARRGVAGHGEHYDPPNGWLFGKNPPSPGEKRDWEGWELPFFFGFSGSLVFGGVFLAYKPDTSIQTWARREAYRRLER  100 (105)
T ss_pred             cccccccCCCCCcCCCCCccccCCCCCcCCCcchHhhhHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhH
Confidence            444555444   4559999999999999999999999999999999999999999999999999999999999999543

6.5.3 from EC) is a respiratory-chain enzyme that catalyses the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane (NADH + ubiquinone = NAD+ + ubiquinol) []. Complex I is a major source of reactive oxygen species (ROS) that are predominantly formed by electron transfer from FMNH(2). Complex I is found in bacteria, cyanobacteria (as a NADH-plastoquinone oxidoreductase), archaea [], mitochondira, and in the hydrogenosome, a mitochondria-derived organelle. In general, the bacterial complex consists of 14 different subunits, while the mitochondrial complex contains homologues to these subunits in addition to approximately 31 additional proteins []. Mitochondrial complex I, which is located in the inner mitochondrial membrane, is the largest multimeric respiratory enzyme in the mitochondria, consisting of more than 40 subunits, one FMN co-factor and eight FeS clusters []. The assembly of mitochondrial complex I is an intricate process that requires the cooperation of the nuclear and mitochondrial genomes [, ]. Mitochondrial complex I can cycle between active and deactive forms that can be distinguished by the reactivity towards divalent cations and thiol-reactive agents. All redox prosthetic groups reside in the peripheral arm of the L-shaped structure. The NADH oxidation domain harbouring the FMN cofactor is connected via a chain of iron-sulphur clusters to the ubiquinone reduction site that is located in a large pocket formed by the PSST and 49kDa subunits of complex I []. This entry represents the ESSS subunit from mitochondrial NADH:ubiquinone oxidoreductase (complex I). It carries mitochondrial import sequences [].

>PF14990 DUF4516: Domain of unknown function (DUF4516)

Probab=83.43  E-value=1.4  Score=27.62  Aligned_cols=12  Identities=58%  Similarity=0.542  Sum_probs=9.5

Q ss_pred             hHhhcCCCCCHH
Q 034267           72 VGLNAKPDLTIE   83 (100)
Q Consensus        72 v~l~~KPDtsIq   83 (100)
                      |=++||||.||-
T Consensus        28 VH~~ykPdltiP   39 (47)
T PF14990_consen   28 VHNIYKPDLTIP   39 (47)
T ss_pred             HHHHhCccCCCC
Confidence            446799999984

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00