Citrus Sinensis ID: 034269

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100
Protein Sequence
MAISKALIASVLLSLVVFHLVEAEHTINSSKGTGYPKPSIDCGGACQARCRLSSRPNLCHRACGTCCARCNCVPPGTAGNTEVCPCYANMTTHHGRRKCP
Secondary Structure (PSIPRED)
cHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccHHHHHHHHHccccccHHHHHHHHHHccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccHHHHHccccccccHHHHHHHHHHHHccccccccccccccccccccccccccccccc
Coil and Loop (DISEMBL)
MAISKALIASVLLSLVVFHLVEAehtinsskgtgypkpsidcggacqarcrlssrpnlchracgtccarcncvppgtagntevcpcyanmtthhgrrkcp
Flexible Loop (DISEMBL)
MAISKALIASVLLSLVVFHLVEAEhtinsskgtgypkPSIDCGGACQARCRLSSRPNLCHRACGTCCARCNCVPPGTAGNTEVCPCYANMtthhgrrkcp
Low Complexity Region (SEG)
MaiskaliasvllslvvfhlvEAEHTINSSKGTGYPKPSIDCGGACQARCRLSSRPNLCHRACGTCCARCNCVPPGTAGNTEVCPCYANMTTHHGRRKCP
Disordered region (IsUnstruct)
****KALIASVLLSLVVFHLVEAEHTINSSKGTGYPKPSIDCGGACQARCRLSSRPNLCHRACGTCCARCNCVPPGTAGNTEVCPCYANMT*********
Disordered Region (DISOPRED)
***SKALIASVLLSLVVFHLV********************CGGACQARCRLSSRPNLCHRACGTCCARCNCVPPGTAGNTEVCPCYANMTTHH******
Disordered Region (DISEMBL)
MAISKALIASVLLSLVVFHLVEAEHTINSSKGTGYPKPSIDCGGACQARCRLSSRPNLCHRACGTCCARCNCVPPGTAGNTEVCPCYANMT*********
Disordered Region (DISPRO)
MAISKALIASVLLSLVVFHLVEAEH*************SIDCGGACQARCRLSSRPNLCHRACGTCCARCNCVPPGTAGNTEVCPCYANMTT******C*
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MAISKALIASVLLSLVVFHLVEAEHTINSSKGTGYPKPSIDCGGACQARCRLSSRPNLCHRACGTCCARCNCVPPGTAGNTEVCPCYANMTTHHGRRKCP
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	100	2.2.26 [Sep-21-2011]
Q93X17	104	Snakin-2 OS=Solanum tuber	N/A	no	1.0	0.961	0.653	2e-28
P46689	98	Gibberellin-regulated pro	yes	no	0.98	1.0	0.71	1e-24
F4IQJ4	94	Gibberellin-regulated pro	no	no	0.74	0.787	0.662	2e-22
P46687	99	Gibberellin-regulated pro	no	no	0.78	0.787	0.614	2e-19
Q8GWK5	119	Gibberellin-regulated pro	no	no	1.0	0.840	0.433	7e-19
Q6NMQ7	101	Gibberellin-regulated pro	no	no	0.97	0.960	0.408	2e-13
P46688	99	Gibberellin-regulated pro	no	no	0.61	0.616	0.704	6e-13
Q9LFR3	275	Gibberellin-regulated pro	no	no	0.61	0.221	0.612	8e-13
Q8LFM2	89	Gibberellin-regulated pro	no	no	0.82	0.921	0.391	3e-11
O80641	87	Gibberellin-regulated pro	no	no	0.87	1.0	0.375	6e-10

>sp|Q93X17|SNAK2_SOLTU Snakin-2 OS=Solanum tuberosum GN=SN2 PE=1 SV=1

 Score =  124 bits (310), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 68/104 (65%), Positives = 80/104 (76%), Gaps = 4/104 (3%)

Query: 1   MAISKALIASVLLSLVVFHLVEA----EHTINSSKGTGYPKPSIDCGGACQARCRLSSRP 56
           MAISKAL AS+LLSL++   V++    + T N+     Y    IDCGGAC ARCRLSSRP
Sbjct: 1   MAISKALFASLLLSLLLLEQVQSIQTDQVTSNAISEAAYSYKKIDCGGACAARCRLSSRP 60

Query: 57  NLCHRACGTCCARCNCVPPGTAGNTEVCPCYANMTTHHGRRKCP 100
            LC+RACGTCCARCNCVPPGT+GNTE CPCYA++TTH  +RKCP
Sbjct: 61  RLCNRACGTCCARCNCVPPGTSGNTETCPCYASLTTHGNKRKCP 104

Has an antimicrobial activity. Causes a rapid aggregation of both Gram-positive and Gram-negative bacteria, but the antimicrobial activity is not correlated with the capacity to aggregate bacteria.
Solanum tuberosum (taxid: 4113)

>sp|P46689|GASA1_ARATH Gibberellin-regulated protein 1 OS=Arabidopsis thaliana GN=GASA1 PE=2 SV=2

 Score =  111 bits (277), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 71/100 (71%), Positives = 79/100 (79%), Gaps = 2/100 (2%)

Query: 1   MAISKALIASVLLSLVVFHLVEAEHTINSSKGTGYPKPSIDCGGACQARCRLSSRPNLCH 60
           MAISKALIAS+L+SL+V  LV+A+   NS K  GY K  IDCG AC ARCRLS RP LCH
Sbjct: 1   MAISKALIASLLISLLVLQLVQAD-VENSQKKNGYAK-KIDCGSACVARCRLSRRPRLCH 58

Query: 61  RACGTCCARCNCVPPGTAGNTEVCPCYANMTTHHGRRKCP 100
           RACGTCC RCNCVPPGT GN + C CYA++TTH GRRKCP
Sbjct: 59  RACGTCCYRCNCVPPGTYGNYDKCQCYASLTTHGGRRKCP 98

Gibberellin-regulated protein that may function in hormonal controlled steps of development such as seed germination, flowering and seed maturation.

Arabidopsis thaliana (taxid: 3702)

>sp|F4IQJ4|GASAB_ARATH Gibberellin-regulated protein 11 OS=Arabidopsis thaliana GN=GASA11 PE=3 SV=1

 Score =  104 bits (259), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 49/74 (66%), Positives = 56/74 (75%)

Query: 27  INSSKGTGYPKPSIDCGGACQARCRLSSRPNLCHRACGTCCARCNCVPPGTAGNTEVCPC 86
           +++   T    P IDC   CQ RC LSSRPNLCHRACGTCCARCNCV PGT+GN + CPC
Sbjct: 21  VHADMVTSNDAPKIDCNSRCQERCSLSSRPNLCHRACGTCCARCNCVAPGTSGNYDKCPC 80

Query: 87  YANMTTHHGRRKCP 100
           Y ++TTH GRRKCP
Sbjct: 81  YGSLTTHGGRRKCP 94

Gibberellin-regulated protein that may function in hormonal controlled steps of development such as seed germination, flowering and seed maturation.

Arabidopsis thaliana (taxid: 3702)

>sp|P46687|GASA3_ARATH Gibberellin-regulated protein 3 OS=Arabidopsis thaliana GN=GASA3 PE=2 SV=1

 Score = 94.4 bits (233), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 51/83 (61%), Positives = 58/83 (69%), Gaps = 5/83 (6%)

Query: 18  FHLVEAEHTINSSKGTGYPKPSIDCGGACQARCRLSSRPNLCHRACGTCCARCNCVPPGT 77
            H+  AE   +S  G G  K  IDCGG C+ RC  SSRPNLC RAC +CC RCNCVPPGT
Sbjct: 22  LHVHAAE---DSQVGEGVVK--IDCGGRCKGRCSKSSRPNLCLRACNSCCYRCNCVPPGT 76

Query: 78  AGNTEVCPCYANMTTHHGRRKCP 100
           AGN  +CPCYA++TT  GR KCP
Sbjct: 77  AGNHHLCPCYASITTRGGRLKCP 99

Gibberellin-regulated protein that may function in hormonal controlled steps of development such as seed germination, flowering and seed maturation.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8GWK5|GASA9_ARATH Gibberellin-regulated protein 9 OS=Arabidopsis thaliana GN=GASA9 PE=2 SV=1

 Score = 92.4 bits (228), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 49/113 (43%), Positives = 67/113 (59%), Gaps = 13/113 (11%)

Query: 1   MAISKALIASVLLSLVVFHL-------------VEAEHTINSSKGTGYPKPSIDCGGACQ 47
           +A    +I+ +LLS V+  L                E+   + K T + +P I+CG AC 
Sbjct: 7   VAFVTLIISFLLLSQVLAELSSSSNNETSSVSQTNDENQTAAFKRTYHHRPRINCGHACA 66

Query: 48  ARCRLSSRPNLCHRACGTCCARCNCVPPGTAGNTEVCPCYANMTTHHGRRKCP 100
            RC  +SR  +CHRACG+CCA+C CVPPGT+GNT  CPCYA++ TH  + KCP
Sbjct: 67  RRCSKTSRKKVCHRACGSCCAKCQCVPPGTSGNTASCPCYASIRTHGNKLKCP 119

Gibberellin-regulated protein that may function in hormonal controlled steps of development such as seed germination, flowering and seed maturation.

Arabidopsis thaliana (taxid: 3702)

>sp|Q6NMQ7|GASA6_ARATH Gibberellin-regulated protein 6 OS=Arabidopsis thaliana GN=GASA6 PE=3 SV=1

 Score = 74.3 bits (181), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 40/98 (40%), Positives = 50/98 (51%), Gaps = 1/98 (1%)

Query: 3   ISKALIASVLLSLVVFHLVEAEHTINSSKGTGYPKPSIDCGGACQARCRLSSRPNLCHRA 62
           I+  L+ ++L + V   + +       S G G  K S  CGG C  RC  +     C   
Sbjct: 5   ITSFLLLTILFTFVCLTMSKEAEYHPESYGPGSLK-SYQCGGQCTRRCSNTKYHKPCMFF 63

Query: 63  CGTCCARCNCVPPGTAGNTEVCPCYANMTTHHGRRKCP 100
           C  CCA+C CVPPGT GN +VCPCY N  T  G  KCP
Sbjct: 64  CQKCCAKCLCVPPGTYGNKQVCPCYNNWKTQQGGPKCP 101

Gibberellin-regulated protein that may function in hormonal controlled steps of development such as seed germination, flowering and seed maturation.

Arabidopsis thaliana (taxid: 3702)

>sp|P46688|GASA2_ARATH Gibberellin-regulated protein 2 OS=Arabidopsis thaliana GN=GASA2 PE=2 SV=1

 Score = 72.8 bits (177), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 43/61 (70%), Positives = 50/61 (81%)

Query: 40  IDCGGACQARCRLSSRPNLCHRACGTCCARCNCVPPGTAGNTEVCPCYANMTTHHGRRKC 99
           IDCGG C+ RC  SSR  LC RAC +CC+RCNCVPPGT+GNT +CPCYA++TTH GR KC
Sbjct: 39  IDCGGRCKDRCSKSSRTKLCLRACNSCCSRCNCVPPGTSGNTHLCPCYASITTHGGRLKC 98

Query: 100 P 100
           P
Sbjct: 99  P 99

Gibberellin-regulated protein that may function in hormonal controlled steps of development such as seed germination, flowering and seed maturation.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LFR3|GASAE_ARATH Gibberellin-regulated protein 14 OS=Arabidopsis thaliana GN=GASA14 PE=1 SV=1

 Score = 72.4 bits (176), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 38/62 (61%), Positives = 40/62 (64%), Gaps = 1/62 (1%)

Query: 40  IDCGGACQARCRLSSRPNLCHRACGTCCARCNCVPPGTAGNTEVC-PCYANMTTHHGRRK 98
           IDC   C  RC   SR N+C RAC TCC RC CVPPGT GN E C  CYANM T  G+ K
Sbjct: 214 IDCVPLCGTRCGQHSRKNVCMRACVTCCYRCKCVPPGTYGNKEKCGSCYANMKTRGGKSK 273

Query: 99  CP 100
           CP
Sbjct: 274 CP 275

Gibberellin-regulated protein that may function in hormonal controlled steps of development such as seed germination, flowering and seed maturation.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8LFM2|GASAA_ARATH Gibberellin-regulated protein 10 OS=Arabidopsis thaliana GN=GASA10 PE=2 SV=1

 Score = 67.4 bits (163), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 38/97 (39%), Positives = 49/97 (50%), Gaps = 15/97 (15%)

Query: 5   KALIASVLLSLVVFHLVEAEHTINSSKGTGYPKPSIDCGGACQARCRLSSRPNLCHRACG 64
           K LI S+L++  +F L  A+              S  CGG C  RC  + R + C + C 
Sbjct: 7   KVLIISLLITSSLFILSTAD--------------SSPCGGKCNVRCSKAGRQDRCLKYCN 52

Query: 65  TCCARCN-CVPPGTAGNTEVCPCYANMTTHHGRRKCP 100
            CC +CN CVP GT GN + CPCY +M    G  KCP
Sbjct: 53  ICCEKCNYCVPSGTYGNKDECPCYRDMKNSKGTSKCP 89

Gibberellin-regulated protein that may function in hormonal controlled steps of development such as seed germination, flowering and seed maturation.

Arabidopsis thaliana (taxid: 3702)

>sp|O80641|GASA8_ARATH Gibberellin-regulated protein 8 OS=Arabidopsis thaliana GN=At2g39540 PE=2 SV=1

 Score = 62.8 bits (151), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 33/88 (37%), Positives = 42/88 (47%), Gaps = 1/88 (1%)

Query: 13  LSLVVFHLVEAEHTINSSKGTGYPKPSIDCGGACQARCRLSSRPNLCHRACGTCCARCNC 72
           + LVV         + SS        S  CGG C  RC  + +   C + C  CC +CNC
Sbjct: 1   MKLVVVQFFIISLLLTSSFSVLSSADS-SCGGKCNVRCSKAGQHEECLKYCNICCQKCNC 59

Query: 73  VPPGTAGNTEVCPCYANMTTHHGRRKCP 100
           VP GT G+ + CPCY +M    G  KCP
Sbjct: 60  VPSGTFGHKDECPCYRDMKNSKGGSKCP 87

Gibberellin-regulated protein that may function in hormonal controlled steps of development such as seed germination, flowering and seed maturation.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	100
257815602	103	gast1-like protein [Jatropha curcas]	1.0	0.970	0.669	8e-31
224085870	102	predicted protein [Populus trichocarpa]	0.98	0.960	0.656	2e-30
255710053	103	cold-regulated LTCOR12 [Jatropha curcas]	1.0	0.970	0.669	4e-29
209967463	102	GAST-like protein [Populus euphratica]	0.98	0.960	0.636	6e-29
224085866	98	predicted protein [Populus trichocarpa]	0.98	1.0	0.66	1e-28
357466949	103	Gibberellin-regulated protein [Medicago	0.99	0.961	0.615	3e-28
445069046	102	GA-stimulated transcript-like protein 1	0.99	0.970	0.708	4e-28
225457981	98	PREDICTED: snakin-2 isoform 1 [Vitis vin	0.98	1.0	0.7	9e-28
357438421	101	Gibberellin-regulated protein [Medicago	1.0	0.990	0.633	1e-27
224062003	95	predicted protein [Populus trichocarpa]	0.95	1.0	0.64	3e-27

>gi|257815602|gb|ACV70139.1| gast1-like protein [Jatropha curcas]

 Score =  137 bits (345), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 69/103 (66%), Positives = 78/103 (75%), Gaps = 3/103 (2%)

Query: 1   MAISKALIASVLLSLV-VFHLVEAEHTINSSK--GTGYPKPSIDCGGACQARCRLSSRPN 57
           MA SK LIAS+++SL+ + H  EA+H    SK   T  P   IDCG AC ARC+LSSRPN
Sbjct: 1   MAFSKLLIASLVISLLFLLHFAEADHQTVKSKLDATNSPAEEIDCGSACTARCQLSSRPN 60

Query: 58  LCHRACGTCCARCNCVPPGTAGNTEVCPCYANMTTHHGRRKCP 100
           LC RACGTCCARC CVPPGTAGN E CPCYA++TTH GRRKCP
Sbjct: 61  LCERACGTCCARCKCVPPGTAGNYEACPCYASLTTHGGRRKCP 103

Source: Jatropha curcas

Species: Jatropha curcas

Genus: Jatropha

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224085870|ref|XP_002307720.1| predicted protein [Populus trichocarpa] gi|222857169|gb|EEE94716.1| predicted protein [Populus trichocarpa]

 Score =  136 bits (343), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 65/99 (65%), Positives = 78/99 (78%), Gaps = 1/99 (1%)

Query: 3   ISKALIASVLLSLVVFHLVEAEH-TINSSKGTGYPKPSIDCGGACQARCRLSSRPNLCHR 61
           I+K LIA +  SL+V HL EA+H T+NS+     P   IDCG AC+ARC+LSSRP LC R
Sbjct: 4   ITKFLIALLFFSLLVLHLAEADHDTVNSNLAASSPPTKIDCGSACEARCQLSSRPRLCKR 63

Query: 62  ACGTCCARCNCVPPGTAGNTEVCPCYANMTTHHGRRKCP 100
           ACGTCC+RC+CVPPGTAGN + CPCYA++TTH GRRKCP
Sbjct: 64  ACGTCCSRCSCVPPGTAGNYDACPCYASLTTHGGRRKCP 102

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255710053|gb|ACU30848.1| cold-regulated LTCOR12 [Jatropha curcas]

 Score =  131 bits (330), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 69/103 (66%), Positives = 78/103 (75%), Gaps = 3/103 (2%)

Query: 1   MAISKALIASVLLSLVVF-HLVEAEHTINSSK--GTGYPKPSIDCGGACQARCRLSSRPN 57
           MA SK LIAS+++SL++  H  EA+H    SK   T  P   IDCG AC ARC+LSSRPN
Sbjct: 1   MAFSKLLIASLVISLLLLLHFAEADHQTVKSKLDATNSPAEEIDCGSACTARCQLSSRPN 60

Query: 58  LCHRACGTCCARCNCVPPGTAGNTEVCPCYANMTTHHGRRKCP 100
           LC RACGTCCARC CVPPGTAGN E CPCYA++TTH GRRKCP
Sbjct: 61  LCKRACGTCCARCKCVPPGTAGNYEACPCYASLTTHGGRRKCP 103

Source: Jatropha curcas

Species: Jatropha curcas

Genus: Jatropha

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|209967463|gb|ACJ02356.1| GAST-like protein [Populus euphratica]

 Score =  131 bits (329), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 63/99 (63%), Positives = 77/99 (77%), Gaps = 1/99 (1%)

Query: 3   ISKALIASVLLSLVVFHLVEAEH-TINSSKGTGYPKPSIDCGGACQARCRLSSRPNLCHR 61
           I+K LIA +  SL+V  L EA+H T++S+     P   IDCG AC+ARC+LSSRP LC R
Sbjct: 4   ITKLLIALLCFSLLVLQLAEADHDTVSSNLAASSPPTKIDCGSACEARCQLSSRPRLCKR 63

Query: 62  ACGTCCARCNCVPPGTAGNTEVCPCYANMTTHHGRRKCP 100
           ACGTCC+RC+CVPPGTAGN + CPCYA++TTH GRRKCP
Sbjct: 64  ACGTCCSRCSCVPPGTAGNYDACPCYASLTTHGGRRKCP 102

Source: Populus euphratica

Species: Populus euphratica

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224085866|ref|XP_002307719.1| predicted protein [Populus trichocarpa] gi|222857168|gb|EEE94715.1| predicted protein [Populus trichocarpa]

 Score =  130 bits (327), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 66/100 (66%), Positives = 75/100 (75%), Gaps = 2/100 (2%)

Query: 1   MAISKALIASVLLSLVVFHLVEAEHTINSSKGTGYPKPSIDCGGACQARCRLSSRPNLCH 60
           MAI K L A+VLL  +VF L  ++  I S   +  P P IDC  AC  RC+LSSRPNLCH
Sbjct: 1   MAIFKTL-AAVLLVGIVFSLAVSDMVIKSLVESD-PAPQIDCASACAVRCQLSSRPNLCH 58

Query: 61  RACGTCCARCNCVPPGTAGNTEVCPCYANMTTHHGRRKCP 100
           RACGTCCARCNCVPPGT+GN +VCPCY NMTTHHG+ KCP
Sbjct: 59  RACGTCCARCNCVPPGTSGNYDVCPCYGNMTTHHGQHKCP 98

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357466949|ref|XP_003603759.1| Gibberellin-regulated protein [Medicago truncatula] gi|355492807|gb|AES74010.1| Gibberellin-regulated protein [Medicago truncatula]

 Score =  129 bits (323), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 64/104 (61%), Positives = 77/104 (74%), Gaps = 5/104 (4%)

Query: 1   MAISKALIASVLLSLVVFHLVEA----EHTINSSKGTGYPKPSIDCGGACQARCRLSSRP 56
           MA+ K L+ S+L++ V  HLV A    E  +++       +  IDC GAC ARCRLSSRP
Sbjct: 1   MALFKLLVTSLLVTFVTLHLVHALDHPEPQVHAETQVSLQQ-QIDCNGACAARCRLSSRP 59

Query: 57  NLCHRACGTCCARCNCVPPGTAGNTEVCPCYANMTTHHGRRKCP 100
           +LCHRACGTCC+RCNCVPPGT+GN E+CPCYAN TTH GRRKCP
Sbjct: 60  HLCHRACGTCCSRCNCVPPGTSGNQEMCPCYANQTTHGGRRKCP 103

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|445069046|gb|AGE15497.1| GA-stimulated transcript-like protein 1 [Gossypium hirsutum]

 Score =  128 bits (321), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 73/103 (70%), Positives = 84/103 (81%), Gaps = 4/103 (3%)

Query: 1   MAISKALIASVLLSLVVFHLVEAEHTINSS---KGTGYPKPSIDCGGACQARCRLSSRPN 57
           MAI KA IAS+L+SL++  LV A+  + S+   KGT  PK  IDCGGAC ARCRLSSRP+
Sbjct: 1   MAIFKAFIASLLISLLLLQLVAADQLVTSASKNKGTAPPK-KIDCGGACAARCRLSSRPH 59

Query: 58  LCHRACGTCCARCNCVPPGTAGNTEVCPCYANMTTHHGRRKCP 100
           LC RACGTCCARCNCVPPGTAGN E+CPCYA++TTH GRRKCP
Sbjct: 60  LCKRACGTCCARCNCVPPGTAGNQEMCPCYASLTTHGGRRKCP 102

Source: Gossypium hirsutum

Species: Gossypium hirsutum

Genus: Gossypium

Family: Malvaceae

Order: Malvales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225457981|ref|XP_002275694.1| PREDICTED: snakin-2 isoform 1 [Vitis vinifera] gi|302142658|emb|CBI19861.3| unnamed protein product [Vitis vinifera]

 Score =  127 bits (319), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 70/100 (70%), Positives = 79/100 (79%), Gaps = 2/100 (2%)

Query: 1   MAISKALIASVLLSLVVFHLVEAEHTINSSKGTGYPKPSIDCGGACQARCRLSSRPNLCH 60
           MAISK LIAS+L+SL+V+ + EA  T  S  G   P   +DCGGAC ARCRLSSRPNLC+
Sbjct: 1   MAISKTLIASLLISLLVYQITEAATT--SGDGASSPTEKMDCGGACSARCRLSSRPNLCN 58

Query: 61  RACGTCCARCNCVPPGTAGNTEVCPCYANMTTHHGRRKCP 100
           RACGTCCARCNCVPPGT+GN E+CPCYANMTT    RKCP
Sbjct: 59  RACGTCCARCNCVPPGTSGNQEICPCYANMTTRGNERKCP 98

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357438421|ref|XP_003589486.1| Gibberellin-regulated protein [Medicago truncatula] gi|355478534|gb|AES59737.1| Gibberellin-regulated protein [Medicago truncatula]

 Score =  126 bits (317), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 64/101 (63%), Positives = 74/101 (73%), Gaps = 1/101 (0%)

Query: 1   MAISKALIASVLLSLVVFH-LVEAEHTINSSKGTGYPKPSIDCGGACQARCRLSSRPNLC 59
           MAISK L+AS+L S ++FH LV+A      ++  G     IDC GAC ARCRLSSRPNLC
Sbjct: 1   MAISKLLVASLLASFLLFHHLVDATDQSAYAQTQGSLLQQIDCDGACVARCRLSSRPNLC 60

Query: 60  HRACGTCCARCNCVPPGTAGNTEVCPCYANMTTHHGRRKCP 100
            RACGTCC RCNCVPPGT+GN E CPCYA+ TT  G+ KCP
Sbjct: 61  QRACGTCCRRCNCVPPGTSGNKEKCPCYASQTTRGGKPKCP 101

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224062003|ref|XP_002300706.1| predicted protein [Populus trichocarpa] gi|222842432|gb|EEE79979.1| predicted protein [Populus trichocarpa]

 Score =  125 bits (314), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 64/100 (64%), Positives = 74/100 (74%), Gaps = 5/100 (5%)

Query: 1   MAISKALIASVLLSLVVFHLVEAEHTINSSKGTGYPKPSIDCGGACQARCRLSSRPNLCH 60
           MAISK LIAS+++SL+V   V A     S      P  +IDCGGAC+ RC LSSRP+LC+
Sbjct: 1   MAISKLLIASLVVSLLVLQQVNASPAAGS-----IPGKNIDCGGACKDRCSLSSRPHLCN 55

Query: 61  RACGTCCARCNCVPPGTAGNTEVCPCYANMTTHHGRRKCP 100
           RACGTCCARC CVP GT+GN + CPCYA MTTH GRRKCP
Sbjct: 56  RACGTCCARCKCVPKGTSGNLDTCPCYATMTTHGGRRKCP 95

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	100
TAIR|locus:2005634	98	GASA1 "AT1G75750" [Arabidopsis	0.72	0.734	0.739	3.1e-28
TAIR|locus:2062175	94	AT2G18420 "AT2G18420" [Arabido	0.74	0.787	0.662	4.5e-27
TAIR|locus:2136897	99	GASA2 "AT4G09610" [Arabidopsis	0.74	0.747	0.623	3.3e-24
TAIR|locus:2136892	99	GASA3 "AT4G09600" [Arabidopsis	0.71	0.717	0.657	4.2e-24
TAIR|locus:2199645	119	AT1G22690 "AT1G22690" [Arabido	0.77	0.647	0.545	1.6e-22
TAIR|locus:2147810	275	GASA14 "AT5G14920" [Arabidopsi	0.61	0.221	0.612	3.2e-17
TAIR|locus:2019195	101	GASA6 "AT1G74670" [Arabidopsis	0.77	0.762	0.493	2e-15
TAIR|locus:505006327	97	GASA5 "GAST1 protein homolog 5	0.73	0.752	0.445	4.2e-15
TAIR|locus:505006706	89	AT5G59845 "AT5G59845" [Arabido	0.62	0.696	0.476	3.8e-14
TAIR|locus:2052876	106	AT2G30810 [Arabidopsis thalian	0.73	0.688	0.459	3.8e-14

TAIR|locus:2005634 GASA1 "AT1G75750" [Arabidopsis thaliana (taxid:3702)]

 Score = 315 (115.9 bits), Expect = 3.1e-28, P = 3.1e-28
 Identities = 54/73 (73%), Positives = 57/73 (78%)

Query:    28 NSSKGTGYPKPSIDCGGACQARCRLSSRPNLCHRACGTCCARCNCVPPGTAGNTEVCPCY 87
             NS K  GY K  IDCG AC ARCRLS RP LCHRACGTCC RCNCVPPGT GN + C CY
Sbjct:    27 NSQKKNGYAK-KIDCGSACVARCRLSRRPRLCHRACGTCCYRCNCVPPGTYGNYDKCQCY 85

Query:    88 ANMTTHHGRRKCP 100
             A++TTH GRRKCP
Sbjct:    86 ASLTTHGGRRKCP 98

GO:0003674 "molecular_function" evidence=ND

GO:0005576 "extracellular region" evidence=ISM

GO:0009737 "response to abscisic acid stimulus" evidence=IDA

GO:0009739 "response to gibberellin stimulus" evidence=IMP;IDA

GO:0009741 "response to brassinosteroid stimulus" evidence=IMP

GO:0009826 "unidimensional cell growth" evidence=TAS

GO:0009505 "plant-type cell wall" evidence=IDA

GO:0005618 "cell wall" evidence=IDA

GO:0000271 "polysaccharide biosynthetic process" evidence=RCA

GO:0006569 "tryptophan catabolic process" evidence=RCA

GO:0009684 "indoleacetic acid biosynthetic process" evidence=RCA

GO:0009825 "multidimensional cell growth" evidence=RCA

GO:0009932 "cell tip growth" evidence=RCA

GO:0010817 "regulation of hormone levels" evidence=RCA

GO:0043481 "anthocyanin accumulation in tissues in response to UV light" evidence=RCA

GO:0048767 "root hair elongation" evidence=RCA

GO:0071555 "cell wall organization" evidence=RCA

TAIR|locus:2062175 AT2G18420 "AT2G18420" [Arabidopsis thaliana (taxid:3702)]

 Score = 304 (112.1 bits), Expect = 4.5e-27, P = 4.5e-27
 Identities = 49/74 (66%), Positives = 56/74 (75%)

Query:    27 INSSKGTGYPKPSIDCGGACQARCRLSSRPNLCHRACGTCCARCNCVPPGTAGNTEVCPC 86
             +++   T    P IDC   CQ RC LSSRPNLCHRACGTCCARCNCV PGT+GN + CPC
Sbjct:    21 VHADMVTSNDAPKIDCNSRCQERCSLSSRPNLCHRACGTCCARCNCVAPGTSGNYDKCPC 80

Query:    87 YANMTTHHGRRKCP 100
             Y ++TTH GRRKCP
Sbjct:    81 YGSLTTHGGRRKCP 94

GO:0003674 "molecular_function" evidence=ND

GO:0005576 "extracellular region" evidence=ISM

GO:0009739 "response to gibberellin stimulus" evidence=ISS

TAIR|locus:2136897 GASA2 "AT4G09610" [Arabidopsis thaliana (taxid:3702)]

 Score = 277 (102.6 bits), Expect = 3.3e-24, P = 3.3e-24
 Identities = 48/77 (62%), Positives = 57/77 (74%)

Query:    25 HTINSSK-GTGYPKPSIDCGGACQARCRLSSRPNLCHRACGTCCARCNCVPPGTAGNTEV 83
             H  + +K G G  K  IDCGG C+ RC  SSR  LC RAC +CC+RCNCVPPGT+GNT +
Sbjct:    25 HAADGAKVGEGVVK--IDCGGRCKDRCSKSSRTKLCLRACNSCCSRCNCVPPGTSGNTHL 82

Query:    84 CPCYANMTTHHGRRKCP 100
             CPCYA++TTH GR KCP
Sbjct:    83 CPCYASITTHGGRLKCP 99

GO:0003674 "molecular_function" evidence=ND

GO:0005576 "extracellular region" evidence=ISM

GO:0009739 "response to gibberellin stimulus" evidence=ISS

TAIR|locus:2136892 GASA3 "AT4G09600" [Arabidopsis thaliana (taxid:3702)]

 Score = 276 (102.2 bits), Expect = 4.2e-24, P = 4.2e-24
 Identities = 48/73 (65%), Positives = 54/73 (73%)

Query:    28 NSSKGTGYPKPSIDCGGACQARCRLSSRPNLCHRACGTCCARCNCVPPGTAGNTEVCPCY 87
             +S  G G  K  IDCGG C+ RC  SSRPNLC RAC +CC RCNCVPPGTAGN  +CPCY
Sbjct:    29 DSQVGEGVVK--IDCGGRCKGRCSKSSRPNLCLRACNSCCYRCNCVPPGTAGNHHLCPCY 86

Query:    88 ANMTTHHGRRKCP 100
             A++TT  GR KCP
Sbjct:    87 ASITTRGGRLKCP 99

GO:0003674 "molecular_function" evidence=ND

GO:0005576 "extracellular region" evidence=ISM

GO:0009739 "response to gibberellin stimulus" evidence=ISS;TAS

TAIR|locus:2199645 AT1G22690 "AT1G22690" [Arabidopsis thaliana (taxid:3702)]

 Score = 261 (96.9 bits), Expect = 1.6e-22, P = 1.6e-22
 Identities = 42/77 (54%), Positives = 55/77 (71%)

Query:    24 EHTINSSKGTGYPKPSIDCGGACQARCRLSSRPNLCHRACGTCCARCNCVPPGTAGNTEV 83
             E+   + K T + +P I+CG AC  RC  +SR  +CHRACG+CCA+C CVPPGT+GNT  
Sbjct:    43 ENQTAAFKRTYHHRPRINCGHACARRCSKTSRKKVCHRACGSCCAKCQCVPPGTSGNTAS 102

Query:    84 CPCYANMTTHHGRRKCP 100
             CPCYA++ TH  + KCP
Sbjct:   103 CPCYASIRTHGNKLKCP 119

GO:0003674 "molecular_function" evidence=ND

GO:0005576 "extracellular region" evidence=ISM

GO:0009739 "response to gibberellin stimulus" evidence=ISS

TAIR|locus:2147810 GASA14 "AT5G14920" [Arabidopsis thaliana (taxid:3702)]

 Score = 211 (79.3 bits), Expect = 3.2e-17, P = 3.2e-17
 Identities = 38/62 (61%), Positives = 40/62 (64%)

Query:    40 IDCGGACQARCRLSSRPNLCHRACGTCCARCNCVPPGTAGNTEVC-PCYANMTTHHGRRK 98
             IDC   C  RC   SR N+C RAC TCC RC CVPPGT GN E C  CYANM T  G+ K
Sbjct:   214 IDCVPLCGTRCGQHSRKNVCMRACVTCCYRCKCVPPGTYGNKEKCGSCYANMKTRGGKSK 273

Query:    99 CP 100
             CP
Sbjct:   274 CP 275

GO:0009739 "response to gibberellin stimulus" evidence=ISS

GO:0005515 "protein binding" evidence=IPI

TAIR|locus:2019195 GASA6 "AT1G74670" [Arabidopsis thaliana (taxid:3702)]

 Score = 194 (73.4 bits), Expect = 2.0e-15, P = 2.0e-15
 Identities = 39/79 (49%), Positives = 43/79 (54%)

Query:    22 EAEHTINSSKGTGYPKPSIDCGGACQARCRLSSRPNLCHRACGTCCARCNCVPPGTAGNT 81
             EAE+    S G G  K S  CGG C  RC  +     C   C  CCA+C CVPPGT GN 
Sbjct:    25 EAEYH-PESYGPGSLK-SYQCGGQCTRRCSNTKYHKPCMFFCQKCCAKCLCVPPGTYGNK 82

Query:    82 EVCPCYANMTTHHGRRKCP 100
             +VCPCY N  T  G  KCP
Sbjct:    83 QVCPCYNNWKTQQGGPKCP 101

GO:0003674 "molecular_function" evidence=ND

GO:0005576 "extracellular region" evidence=ISM

GO:0009739 "response to gibberellin stimulus" evidence=ISS

GO:0009740 "gibberellic acid mediated signaling pathway" evidence=RCA;TAS

GO:0009744 "response to sucrose stimulus" evidence=IEP

GO:0009749 "response to glucose stimulus" evidence=IEP

GO:0009750 "response to fructose stimulus" evidence=IEP

GO:0080167 "response to karrikin" evidence=IEP

GO:0010162 "seed dormancy process" evidence=RCA

TAIR|locus:505006327 GASA5 "GAST1 protein homolog 5" [Arabidopsis thaliana (taxid:3702)]

 Score = 191 (72.3 bits), Expect = 4.2e-15, P = 4.2e-15
 Identities = 33/74 (44%), Positives = 40/74 (54%)

Query:    27 INSSKGTGYPKPSIDCGGACQARCRLSSRPNLCHRACGTCCARCNCVPPGTAGNTEVCPC 86
             + +++G G  KP   C   C  RC  +S    C   C  CC +C CVPPGT GN + CPC
Sbjct:    25 VQAARGGGKLKPQ-QCNSKCSFRCSATSHKKPCMFFCLKCCKKCLCVPPGTFGNKQTCPC 83

Query:    87 YANMTTHHGRRKCP 100
             Y N  T  GR KCP
Sbjct:    84 YNNWKTKEGRPKCP 97

GO:0005576 "extracellular region" evidence=ISM

GO:0009739 "response to gibberellin stimulus" evidence=ISS

GO:0009506 "plasmodesma" evidence=IDA

GO:0009408 "response to heat" evidence=IMP

GO:0009751 "response to salicylic acid stimulus" evidence=IMP

GO:0010286 "heat acclimation" evidence=IMP

TAIR|locus:505006706 AT5G59845 "AT5G59845" [Arabidopsis thaliana (taxid:3702)]

 Score = 182 (69.1 bits), Expect = 3.8e-14, P = 3.8e-14
 Identities = 30/63 (47%), Positives = 36/63 (57%)

Query:    39 SIDCGGACQARCRLSSRPNLCHRACGTCCARCN-CVPPGTAGNTEVCPCYANMTTHHGRR 97
             S  CGG C  RC  + R + C + C  CC +CN CVP GT GN + CPCY +M    G  
Sbjct:    27 SSPCGGKCNVRCSKAGRQDRCLKYCNICCEKCNYCVPSGTYGNKDECPCYRDMKNSKGTS 86

Query:    98 KCP 100
             KCP
Sbjct:    87 KCP 89

GO:0003674 "molecular_function" evidence=ND

GO:0005576 "extracellular region" evidence=ISM

GO:0009739 "response to gibberellin stimulus" evidence=ISS

TAIR|locus:2052876 AT2G30810 [Arabidopsis thaliana (taxid:3702)]

 Score = 182 (69.1 bits), Expect = 3.8e-14, P = 3.8e-14
 Identities = 34/74 (45%), Positives = 41/74 (55%)

Query:    27 INSSKGTGYPKPSIDCGGACQARCRLSSRPNLCHRACGTCCARCNCVPPGTAGNTEVCPC 86
             I+ + G G  KP  +C  AC+ RC  +S    C   C  CC +C CVP GT G+ E CPC
Sbjct:    34 IHKNGGEGSLKPE-ECPKACEYRCSATSHRKPCLFFCNKCCNKCLCVPSGTYGHKEECPC 92

Query:    87 YANMTTHHGRRKCP 100
             Y N TT  G  KCP
Sbjct:    93 YNNWTTKEGGPKCP 106

GO:0005576 "extracellular region" evidence=ISM

GO:0009739 "response to gibberellin stimulus" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P46689	GASA1_ARATH	No assigned EC number	0.71	0.98	1.0	yes	no
Q93X17	SNAK2_SOLTU	No assigned EC number	0.6538	1.0	0.9615	N/A	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	estExt_Genewise1_v1.C_LG_V1745	hypothetical protein (102 aa)
		(Populus trichocarpa)
Predicted Functional Partners:
	grail3.0008039502	hypothetical protein (354 aa)							•		0.686
	Lil3_2	light harvesting-like protein 3 (259 aa)							•		0.686
	eugene3.00280238	SubName- Full=Putative uncharacterized protein; (252 aa)							•		0.686
	estExt_fgenesh4_pm.C_LG_XII0286	SubName- Full=Putative uncharacterized protein; (163 aa)							•		0.686
	gdcP1	precursor of carboxylase p-protein 1, glycine decarboxylase complex (EC-1.4.4.2) (1061 aa)							•		0.686
	estExt_fgenesh4_pg.C_LG_XIV1291	SubName- Full=Putative uncharacterized protein; (108 aa)							•		0.686
	estExt_fgenesh4_pg.C_LG_I1368	hypothetical protein (207 aa)							•		0.686
	MADS2	SubName- Full=Putative uncharacterized protein; (204 aa)							•		0.685
	ACO6	1-aminocyclopropane-1-carboxylate (EC-1.14.11.9) (318 aa)							•		0.508

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	100
pfam02704	60	pfam02704, GASA, Gibberellin regulated protein	3e-27

>gnl|CDD|190394 pfam02704, GASA, Gibberellin regulated protein

 Score = 93.9 bits (234), Expect = 3e-27
 Identities = 38/60 (63%), Positives = 41/60 (68%)

Query: 41  DCGGACQARCRLSSRPNLCHRACGTCCARCNCVPPGTAGNTEVCPCYANMTTHHGRRKCP 100
           DCGG C  RC  +SR   C RACG CCA+C CVPPGT GN + CPCY N  TH GR KCP
Sbjct: 1   DCGGKCAVRCSKTSRKKPCLRACGKCCAKCLCVPPGTYGNKDECPCYNNWKTHGGRPKCP 60

This is the GASA gibberellin regulated cysteine rich protein family. The expression of these proteins is up-regulated by the plant hormone gibberellin, most of these proteins have some role in plant development. There are 12 cysteine residues conserved within the alignment giving the potential for these proteins to posses 6 disulphide bonds. Length = 60

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	100
PF02704	60	GASA: Gibberellin regulated protein; InterPro: IPR	100.0
PF07172	95	GRP: Glycine rich protein family; InterPro: IPR010	89.85
PF15128	92	T_cell_tran_alt: T-cell leukemia translocation-alt	88.51

>PF02704 GASA: Gibberellin regulated protein; InterPro: IPR003854 This is the GASA gibberellin regulated cysteine rich protein family

Probab=100.00  E-value=1.1e-37  Score=202.13  Aligned_cols=60  Identities=67%  Similarity=1.515  Sum_probs=59.4

Q ss_pred             CchHHhhHHhhcCCCCchHHHHhhHhcCcccccCCCCCCCCCCCCccccccccCCCCCCC
Q 034269           41 DCGGACQARCRLSSRPNLCHRACGTCCARCNCVPPGTAGNTEVCPCYANMTTHHGRRKCP  100 (100)
Q Consensus        41 ~C~~~C~~RC~~~~~~~~C~~~C~~CC~~C~CVP~Gt~Gn~~~CpCY~~~~t~~g~~KCP  100 (100)
                      ||+++|++||++++++++|||+||+||++|+|||||||||+|+||||+||+||+|+||||
T Consensus         1 ~C~~~C~~RCs~~~~~~~C~~~C~~CC~~C~CVP~GT~gn~~~CpCY~~m~t~~g~pKCP   60 (60)
T PF02704_consen    1 DCGGACSVRCSKASRKKRCMRACGTCCAKCKCVPPGTYGNKEECPCYRDMKTHGGKPKCP   60 (60)
T ss_pred             CcchHHHHHHhccCCchHHHHHHHHHhccCcccCCCCCCCCccCCChhhhhccCCCCCCc
Confidence            799999999999999999999999999999999999999999999999999999999999

The expression of these proteins is up-regulated by the plant hormone gibberellin, most of these proteins have some role in plant development. There are 12 cysteine residues conserved within the alignment giving the potential for these proteins to posses 6 disulphide bonds.

>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins

Probab=89.85  E-value=0.58  Score=32.33  Aligned_cols=10  Identities=50%  Similarity=0.587  Sum_probs=5.3

Q ss_pred             ChhHH-HHHHHH
Q 034269            1 MAISK-ALIASV   11 (100)
Q Consensus         1 MA~~k-~l~~~l   11 (100)
                      || || +||+.|
T Consensus         1 Ma-SK~~llL~l   11 (95)
T PF07172_consen    1 MA-SKAFLLLGL   11 (95)
T ss_pred             Cc-hhHHHHHHH
Confidence            89 66 344433

Some of them may be involved in resistance to environmental stress [].

>PF15128 T_cell_tran_alt: T-cell leukemia translocation-altered

Probab=88.51  E-value=0.56  Score=33.01  Aligned_cols=21  Identities=38%  Similarity=0.469  Sum_probs=18.6

Q ss_pred             hhHHHHHHHHHHHHHHHHHHh
Q 034269            2 AISKALIASVLLSLVVFHLVE   22 (100)
Q Consensus         2 A~~k~l~~~ll~sll~l~lv~   22 (100)
                      +++|+|+.+|++||+.++++=
T Consensus        26 ~ifkllL~WlvlsLl~I~lAW   46 (92)
T PF15128_consen   26 QIFKLLLGWLVLSLLAIHLAW   46 (92)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH
Confidence            578999999999999999764

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00