Citrus Sinensis ID: 034321

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------10
Protein Sequence
MATTACFIIVSRNEIPIYEAEVGSAVKREDAAQLHQFILHAALDIVQDLAWTTSAMFLKAIDRFNDLVVSVYVTAGHILHTSTQINAMTFLLFIFVIF
Secondary Structure (PSIPRED)
cccEEEEEEEEcccccEEEEEcccccccccHHHHHHHHHHHHHHHHHHHHccccccccccccEEccEEEEEEEccccEEEcccccccHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
cccEEEEEEEEcccccEEEEEccccccccccHHHHHHHHHHHHHHHcccccccccEEEEEEEEEccEEEEEEEcccccccccccccHHHHHHHHHHHc
Coil and Loop (DISEMBL)
MATTACFIIVsrneipiyeaevgsavkreDAAQLHQFILHAALDIVQDLAWTTSAMFLKAIDRFNDLVVSVYVTAGHILHTSTQINAMTFLLFIFVIF
Flexible Loop (DISEMBL)
mattacfiivsrneipiyEAEVGSAVKREDAAQLHQFILHAALDIVQDLAWTTSAMFLKAIDRFNDLVVSVYVTAGHILHTSTQINAMTFLLFIFVIF
Low Complexity Region (SEG)
MATTACFIIVSRNEIPIYEAEVGSAVKREDAAQLHQFILHAALDIVQDLAWTTSAMFLKAIDRFNDLVVSVYVTAGHILHTSTQINAMTFLLFIFVIF
Disordered region (IsUnstruct)
***TACFIIVSRNEIPIYEAEVGSAVKREDAAQLHQFILHAALDIVQDLAWTTSAMFLKAIDRFNDLVVSVYVTAGHILHTSTQINAMTFLLFIFVI*
Disordered Region (DISOPRED)
**TTACFIIVSRNEIPIYE****************QFILHAALDIVQDLAWTTSAMFLKAIDRFNDLVVSVYVTAGHILHTSTQINAMTFLLFIFVIF
Disordered Region (DISEMBL)
MATTACFIIVSRNEIPIYEAEVGSAVKREDAAQLHQFILHAALDIVQDLAWTTSAMFLKAIDRFNDLVVSVYVTAGHILHTSTQINAMTFLLFIFVIF
Disordered Region (DISPRO)
*ATTACFIIVSRNEIPIYEAEVGSAVKREDAAQLHQFILHAALDIVQDLAWTTSAMFLKAIDRFNDLVVSVYVTAGHILHTSTQINAMTFLLFIFVIF
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHi
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MATTACFIIVSRNEIPIYEAEVGSAVKREDAAQLHQFILHAALDIVQDLAWTTSAMFLKAIDRFNDLVVSVYVTAGHILHTSTQINAMTFLLFIFVIF
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	98	2.2.26 [Sep-21-2011]
Q9VUZ1	139	Probable trafficking prot	yes	no	0.775	0.546	0.481	1e-14
Q5RES6	140	Trafficking protein parti	yes	no	0.795	0.557	0.419	5e-14
P0DI82	140	Trafficking protein parti	yes	no	0.795	0.557	0.419	5e-14
P0DI81	140	Trafficking protein parti	yes	no	0.795	0.557	0.419	5e-14
E2QV03	140	Trafficking protein parti	yes	no	0.795	0.557	0.419	5e-14
F1SRI0	140	Trafficking protein parti	yes	no	0.795	0.557	0.419	5e-14
Q3T0F2	140	Trafficking protein parti	yes	no	0.795	0.557	0.419	5e-14
Q9CQP2	140	Trafficking protein parti	yes	no	0.795	0.557	0.419	5e-14
Q08CN0	140	Trafficking protein parti	yes	no	0.795	0.557	0.407	1e-13
Q28IG8	140	Trafficking protein parti	yes	no	0.795	0.557	0.407	2e-13

>sp|Q9VUZ1|TPPC2_DROME Probable trafficking protein particle complex subunit 2 OS=Drosophila melanogaster GN=CG5161 PE=2 SV=2

 Score = 78.2 bits (191), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 38/79 (48%), Positives = 51/79 (64%), Gaps = 3/79 (3%)

Query: 3  TTACFIIVSRNEIPIYEAE---VGSAVKREDAAQLHQFILHAALDIVQDLAWTTSAMFLK 59
          +T  F+IV +N+ PIYE E   V   +++ED   L QFI HAALD+V +  W T+ M LK
Sbjct: 2  STYYFVIVGQNDNPIYEKEFSTVNKELRKEDHRHLTQFIAHAALDLVDEHKWKTANMQLK 61

Query: 60 AIDRFNDLVVSVYVTAGHI 78
          +IDRFN   VS ++TA  I
Sbjct: 62 SIDRFNQWFVSAFITASQI 80

May play a role in vesicular transport from endoplasmic reticulum to Golgi.
Drosophila melanogaster (taxid: 7227)

>sp|Q5RES6|TPPC2_PONAB Trafficking protein particle complex subunit 2 OS=Pongo abelii GN=TRAPPC2 PE=2 SV=1

 Score = 76.6 bits (187), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 34/81 (41%), Positives = 54/81 (66%), Gaps = 3/81 (3%)

Query: 1  MATTACFIIVSRNEIPIYEAE---VGSAVKREDAAQLHQFILHAALDIVQDLAWTTSAMF 57
          M+ +  F+IV  ++ P++E E    G A  ++D   L+QFI HAALD+V +  W ++ M+
Sbjct: 1  MSGSFYFVIVGHHDNPVFEMEFLPAGKAESKDDHRHLNQFIAHAALDLVDENMWLSNNMY 60

Query: 58 LKAIDRFNDLVVSVYVTAGHI 78
          LK +D+FN+  VS +VTAGH+
Sbjct: 61 LKTVDKFNEWFVSAFVTAGHM 81

Prevents ENO1-mediated transcriptional repression and antagonizes ENO1-mediated cell death. May play a role in vesicular transport from endoplasmic reticulum to Golgi.

Pongo abelii (taxid: 9601)

>sp|P0DI82|TPC2B_HUMAN Trafficking protein particle complex subunit 2 protein TRAPPC2P1 OS=Homo sapiens GN=TRAPPC2P1 PE=1 SV=1

 Score = 76.6 bits (187), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 34/81 (41%), Positives = 54/81 (66%), Gaps = 3/81 (3%)

Query: 1  MATTACFIIVSRNEIPIYEAE---VGSAVKREDAAQLHQFILHAALDIVQDLAWTTSAMF 57
          M+ +  F+IV  ++ P++E E    G A  ++D   L+QFI HAALD+V +  W ++ M+
Sbjct: 1  MSGSFYFVIVGHHDNPVFEMEFLPAGKAESKDDHRHLNQFIAHAALDLVDENMWLSNNMY 60

Query: 58 LKAIDRFNDLVVSVYVTAGHI 78
          LK +D+FN+  VS +VTAGH+
Sbjct: 61 LKTVDKFNEWFVSAFVTAGHM 81

Prevents transcriptional repression and induction of cell death by ENO1. May play a role in vesicular transport from endoplasmic reticulum to Golgi.

Homo sapiens (taxid: 9606)

>sp|P0DI81|TPC2A_HUMAN Trafficking protein particle complex subunit 2 OS=Homo sapiens GN=TRAPPC2 PE=1 SV=1

 Score = 76.6 bits (187), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 34/81 (41%), Positives = 54/81 (66%), Gaps = 3/81 (3%)

Query: 1  MATTACFIIVSRNEIPIYEAE---VGSAVKREDAAQLHQFILHAALDIVQDLAWTTSAMF 57
          M+ +  F+IV  ++ P++E E    G A  ++D   L+QFI HAALD+V +  W ++ M+
Sbjct: 1  MSGSFYFVIVGHHDNPVFEMEFLPAGKAESKDDHRHLNQFIAHAALDLVDENMWLSNNMY 60

Query: 58 LKAIDRFNDLVVSVYVTAGHI 78
          LK +D+FN+  VS +VTAGH+
Sbjct: 61 LKTVDKFNEWFVSAFVTAGHM 81

Prevents transcriptional repression and induction of cell death by ENO1 (By similarity). May play a role in vesicular transport from endoplasmic reticulum to Golgi.

Homo sapiens (taxid: 9606)

>sp|E2QV03|TPPC2_CANFA Trafficking protein particle complex subunit 2 OS=Canis familiaris GN=TRAPPC2 PE=3 SV=1

 Score = 76.3 bits (186), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 34/81 (41%), Positives = 54/81 (66%), Gaps = 3/81 (3%)

Query: 1  MATTACFIIVSRNEIPIYEAE---VGSAVKREDAAQLHQFILHAALDIVQDLAWTTSAMF 57
          M+ +  F+IV  ++ P++E E    G A  ++D   L+QFI HAALD+V +  W ++ M+
Sbjct: 1  MSGSFYFVIVGHHDNPVFEMEFLPAGKAESKDDHRHLNQFIAHAALDLVDENMWLSNNMY 60

Query: 58 LKAIDRFNDLVVSVYVTAGHI 78
          LK +D+FN+  VS +VTAGH+
Sbjct: 61 LKTVDKFNEWFVSAFVTAGHM 81

Prevents ENO1-mediated transcriptional repression and antagonizes ENO1-mediated cell death. May play a role in vesicular transport from endoplasmic reticulum to Golgi.

Canis familiaris (taxid: 9615)

>sp|F1SRI0|TPPC2_PIG Trafficking protein particle complex subunit 2 OS=Sus scrofa GN=TRAPPC2 PE=2 SV=2

 Score = 76.3 bits (186), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 34/81 (41%), Positives = 54/81 (66%), Gaps = 3/81 (3%)

Query: 1  MATTACFIIVSRNEIPIYEAE---VGSAVKREDAAQLHQFILHAALDIVQDLAWTTSAMF 57
          M+ +  F+IV  ++ P++E E    G A  ++D   L+QFI HAALD+V +  W ++ M+
Sbjct: 1  MSGSFYFVIVGHHDNPVFEMEFLPAGKAESKDDHRHLNQFIAHAALDLVDENMWLSNNMY 60

Query: 58 LKAIDRFNDLVVSVYVTAGHI 78
          LK +D+FN+  VS +VTAGH+
Sbjct: 61 LKTVDKFNEWFVSAFVTAGHM 81

Prevents ENO1-mediated transcriptional repression and antagonizes ENO1-mediated cell death. May play a role in vesicular transport from endoplasmic reticulum to Golgi.

Sus scrofa (taxid: 9823)

>sp|Q3T0F2|TPPC2_BOVIN Trafficking protein particle complex subunit 2 OS=Bos taurus GN=TRAPPC2 PE=2 SV=1

 Score = 76.3 bits (186), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 34/81 (41%), Positives = 54/81 (66%), Gaps = 3/81 (3%)

Query: 1  MATTACFIIVSRNEIPIYEAE---VGSAVKREDAAQLHQFILHAALDIVQDLAWTTSAMF 57
          M+ +  F+IV  ++ P++E E    G A  ++D   L+QFI HAALD+V +  W ++ M+
Sbjct: 1  MSGSFYFVIVGHHDNPVFEMEFLPAGKAESKDDHRHLNQFIAHAALDLVDENMWLSNNMY 60

Query: 58 LKAIDRFNDLVVSVYVTAGHI 78
          LK +D+FN+  VS +VTAGH+
Sbjct: 61 LKTVDKFNEWFVSAFVTAGHM 81

Prevents ENO1-mediated transcriptional repression and antagonizes ENO1-mediated cell death. May play a role in vesicular transport from endoplasmic reticulum to Golgi.

Bos taurus (taxid: 9913)

>sp|Q9CQP2|TPPC2_MOUSE Trafficking protein particle complex subunit 2 OS=Mus musculus GN=Trappc2 PE=1 SV=1

 Score = 76.3 bits (186), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 34/81 (41%), Positives = 54/81 (66%), Gaps = 3/81 (3%)

Query: 1  MATTACFIIVSRNEIPIYEAEV---GSAVKREDAAQLHQFILHAALDIVQDLAWTTSAMF 57
          M+ +  F+IV  ++ P++E E    G A  ++D   L+QFI HAALD+V +  W ++ M+
Sbjct: 1  MSGSFYFVIVGHHDNPVFEMEFLPPGKAESKDDHRHLNQFIAHAALDLVDENMWLSNNMY 60

Query: 58 LKAIDRFNDLVVSVYVTAGHI 78
          LK +D+FN+  VS +VTAGH+
Sbjct: 61 LKTVDKFNEWFVSAFVTAGHM 81

Prevents ENO1-mediated transcriptional repression and antagonizes ENO1-mediated cell death. May play a role in vesicular transport from endoplasmic reticulum to Golgi.

Mus musculus (taxid: 10090)

>sp|Q08CN0|TPPC2_DANRE Trafficking protein particle complex subunit 2 OS=Danio rerio GN=trappc2 PE=2 SV=1

 Score = 75.1 bits (183), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 33/81 (40%), Positives = 54/81 (66%), Gaps = 3/81 (3%)

Query: 1  MATTACFIIVSRNEIPIYEAEV---GSAVKREDAAQLHQFILHAALDIVQDLAWTTSAMF 57
          M+ +  F++V  ++ P++E E    G A  ++D   L+QFI HAALD+V +  W ++ M+
Sbjct: 1  MSGSFYFVMVGHHDNPVFELEFLPPGKAESKDDHRHLNQFIAHAALDLVDENMWLSNNMY 60

Query: 58 LKAIDRFNDLVVSVYVTAGHI 78
          LK +D+FN+  VS +VTAGH+
Sbjct: 61 LKTVDKFNEWFVSAFVTAGHM 81

May play a role in vesicular transport from endoplasmic reticulum to Golgi.

Danio rerio (taxid: 7955)

>sp|Q28IG8|TPPC2_XENTR Trafficking protein particle complex subunit 2 OS=Xenopus tropicalis GN=trappc2 PE=2 SV=1

 Score = 74.7 bits (182), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 33/81 (40%), Positives = 53/81 (65%), Gaps = 3/81 (3%)

Query: 1  MATTACFIIVSRNEIPIYEAEV---GSAVKREDAAQLHQFILHAALDIVQDLAWTTSAMF 57
          M+ +  F+IV  ++ P++E E    G    ++D   L+QFI HAALD+V +  W ++ M+
Sbjct: 1  MSGSFYFVIVGHHDNPVFEMEFLPQGKTESKDDHRHLNQFIAHAALDLVDENMWLSNNMY 60

Query: 58 LKAIDRFNDLVVSVYVTAGHI 78
          LK +D+FN+  VS +VTAGH+
Sbjct: 61 LKTVDKFNEWFVSAFVTAGHM 81

May play a role in vesicular transport from endoplasmic reticulum to Golgi.

Xenopus tropicalis (taxid: 8364)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	98
297743416	129	unnamed protein product [Vitis vinifera]	0.806	0.612	0.936	1e-36
449459192	135	PREDICTED: trafficking protein particle	0.897	0.651	0.826	2e-36
224075712	135	predicted protein [Populus trichocarpa]	0.836	0.607	0.872	4e-36
224115772	135	predicted protein [Populus trichocarpa]	0.897	0.651	0.815	8e-36
6730745	81	unknown protein; 47435-46588 [Arabidopsi	0.806	0.975	0.911	1e-35
359482681	135	PREDICTED: LOW QUALITY PROTEIN: traffick	0.897	0.651	0.815	1e-35
145337812	135	SNARE-like protein [Arabidopsis thaliana	0.897	0.651	0.793	3e-35
119720824	135	putative TRAPP subunit [Brassica rapa]	0.836	0.607	0.837	5e-35
351724257	135	uncharacterized protein LOC100527093 [Gl	0.897	0.651	0.793	8e-35
388505728	135	unknown [Lotus japonicus]	0.897	0.651	0.782	1e-34

>gi|297743416|emb|CBI36283.3| unnamed protein product [Vitis vinifera]

 Score =  157 bits (396), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 74/79 (93%), Positives = 78/79 (98%)

Query: 1  MATTACFIIVSRNEIPIYEAEVGSAVKREDAAQLHQFILHAALDIVQDLAWTTSAMFLKA 60
          MA+TACFIIVSRN+IPIYEAEVGSAVK+EDAAQ HQFILHAALD+VQDLAWTTSAMFLKA
Sbjct: 1  MASTACFIIVSRNDIPIYEAEVGSAVKKEDAAQQHQFILHAALDVVQDLAWTTSAMFLKA 60

Query: 61 IDRFNDLVVSVYVTAGHIL 79
          IDRFNDLVVSVYVTAGHIL
Sbjct: 61 IDRFNDLVVSVYVTAGHIL 79

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449459192|ref|XP_004147330.1| PREDICTED: trafficking protein particle complex subunit 2-like [Cucumis sativus] gi|449508705|ref|XP_004163387.1| PREDICTED: trafficking protein particle complex subunit 2-like [Cucumis sativus]

 Score =  156 bits (394), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 76/92 (82%), Positives = 82/92 (89%), Gaps = 4/92 (4%)

Query: 1  MATTACFIIVSRNEIPIYEAEVGSAVKREDAAQLHQFILHAALDIVQDLAWTTSAMFLKA 60
          MATTACFIIVSRN IPIYEAEVGSAVKRED+AQLHQFILHA+LDIVQDLAWTTSAMFLKA
Sbjct: 1  MATTACFIIVSRNNIPIYEAEVGSAVKREDSAQLHQFILHASLDIVQDLAWTTSAMFLKA 60

Query: 61 IDRFNDLVVSVYVTAGH----ILHTSTQINAM 88
          +DRFNDLVVSVYVTAGH    +LH S   + +
Sbjct: 61 VDRFNDLVVSVYVTAGHTRLMLLHDSRNDDGI 92

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224075712|ref|XP_002304731.1| predicted protein [Populus trichocarpa] gi|222842163|gb|EEE79710.1| predicted protein [Populus trichocarpa]

 Score =  155 bits (391), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 75/86 (87%), Positives = 80/86 (93%), Gaps = 4/86 (4%)

Query: 1  MATTACFIIVSRNEIPIYEAEVGSAVKREDAAQLHQFILHAALDIVQDLAWTTSAMFLKA 60
          MATTACFIIVSRN+IPIYEAEVGSA KREDAAQ+HQFILHAALDIVQDLAWTTSAM+LKA
Sbjct: 1  MATTACFIIVSRNDIPIYEAEVGSATKREDAAQMHQFILHAALDIVQDLAWTTSAMYLKA 60

Query: 61 IDRFNDLVVSVYVTAGH----ILHTS 82
          IDRFND+VVSVYVTAGH    +LH S
Sbjct: 61 IDRFNDMVVSVYVTAGHTRFMLLHDS 86

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224115772|ref|XP_002332053.1| predicted protein [Populus trichocarpa] gi|222831939|gb|EEE70416.1| predicted protein [Populus trichocarpa]

 Score =  154 bits (388), Expect = 8e-36,   Method: Compositional matrix adjust.
 Identities = 75/92 (81%), Positives = 82/92 (89%), Gaps = 4/92 (4%)

Query: 1  MATTACFIIVSRNEIPIYEAEVGSAVKREDAAQLHQFILHAALDIVQDLAWTTSAMFLKA 60
          MATTACFIIVSR++IPIYEAEVGSA KREDAAQ+HQFILHAALDIVQDLAWTTSAM+LKA
Sbjct: 1  MATTACFIIVSRDDIPIYEAEVGSATKREDAAQMHQFILHAALDIVQDLAWTTSAMYLKA 60

Query: 61 IDRFNDLVVSVYVTAGH----ILHTSTQINAM 88
          IDRFNDLVVSVYVTAGH    +LH S   + +
Sbjct: 61 IDRFNDLVVSVYVTAGHTRLMLLHDSRNDDGI 92

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|6730745|gb|AAF27135.1|AC018849_23 unknown protein; 47435-46588 [Arabidopsis thaliana] gi|32815883|gb|AAP88335.1| At1g80500 [Arabidopsis thaliana]

 Score =  153 bits (387), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 72/79 (91%), Positives = 76/79 (96%)

Query: 1  MATTACFIIVSRNEIPIYEAEVGSAVKREDAAQLHQFILHAALDIVQDLAWTTSAMFLKA 60
          MA TACFIIV RN+IPIYEAEVGSA KREDAAQLHQFILHAALD+VQDLAWTTSAMFLK+
Sbjct: 1  MANTACFIIVGRNDIPIYEAEVGSAAKREDAAQLHQFILHAALDVVQDLAWTTSAMFLKS 60

Query: 61 IDRFNDLVVSVYVTAGHIL 79
          +DRFNDLVVSVYVTAGHIL
Sbjct: 61 VDRFNDLVVSVYVTAGHIL 79

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359482681|ref|XP_003632807.1| PREDICTED: LOW QUALITY PROTEIN: trafficking protein particle complex subunit 2-like [Vitis vinifera]

 Score =  153 bits (387), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 75/92 (81%), Positives = 82/92 (89%), Gaps = 4/92 (4%)

Query: 1  MATTACFIIVSRNEIPIYEAEVGSAVKREDAAQLHQFILHAALDIVQDLAWTTSAMFLKA 60
          MA+TACFIIVSRN+IPIYEAEVGSAVK+EDAAQ HQFILHAALD+VQDLAWTTSAMFLKA
Sbjct: 1  MASTACFIIVSRNDIPIYEAEVGSAVKKEDAAQQHQFILHAALDVVQDLAWTTSAMFLKA 60

Query: 61 IDRFNDLVVSVYVTAGH----ILHTSTQINAM 88
          IDRFNDLVVSVYVTAGH    +LH S   + +
Sbjct: 61 IDRFNDLVVSVYVTAGHTRLMLLHDSRNEDGI 92

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|145337812|ref|NP_178165.2| SNARE-like protein [Arabidopsis thaliana] gi|332198292|gb|AEE36413.1| SNARE-like protein [Arabidopsis thaliana]

 Score =  152 bits (384), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 73/92 (79%), Positives = 80/92 (86%), Gaps = 4/92 (4%)

Query: 1  MATTACFIIVSRNEIPIYEAEVGSAVKREDAAQLHQFILHAALDIVQDLAWTTSAMFLKA 60
          MA TACFIIV RN+IPIYEAEVGSA KREDAAQLHQFILHAALD+VQDLAWTTSAMFLK+
Sbjct: 1  MANTACFIIVGRNDIPIYEAEVGSAAKREDAAQLHQFILHAALDVVQDLAWTTSAMFLKS 60

Query: 61 IDRFNDLVVSVYVTAGH----ILHTSTQINAM 88
          +DRFNDLVVSVYVTAGH    +LH S   + +
Sbjct: 61 VDRFNDLVVSVYVTAGHTRLMLLHDSRNEDGI 92

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|119720824|gb|ABL97982.1| putative TRAPP subunit [Brassica rapa]

 Score =  151 bits (381), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 72/86 (83%), Positives = 79/86 (91%), Gaps = 4/86 (4%)

Query: 1  MATTACFIIVSRNEIPIYEAEVGSAVKREDAAQLHQFILHAALDIVQDLAWTTSAMFLKA 60
          MA TACF+IV+RN+IPIYEAEVGSA KREDAAQLHQFILHAALD+VQDLAWTTSAMFLK+
Sbjct: 1  MANTACFMIVARNDIPIYEAEVGSAAKREDAAQLHQFILHAALDVVQDLAWTTSAMFLKS 60

Query: 61 IDRFNDLVVSVYVTAGH----ILHTS 82
          +DRFNDLVVSVYVTAGH    +LH S
Sbjct: 61 VDRFNDLVVSVYVTAGHTRLMLLHDS 86

Source: Brassica rapa

Species: Brassica rapa

Genus: Brassica

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351724257|ref|NP_001238587.1| uncharacterized protein LOC100527093 [Glycine max] gi|255631540|gb|ACU16137.1| unknown [Glycine max]

 Score =  150 bits (380), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 73/92 (79%), Positives = 81/92 (88%), Gaps = 4/92 (4%)

Query: 1  MATTACFIIVSRNEIPIYEAEVGSAVKREDAAQLHQFILHAALDIVQDLAWTTSAMFLKA 60
          MATTACFIIVSRN+IPIYEAEVG A KREDAAQLHQFILHAALDIVQDLAWTTSAM+LK+
Sbjct: 1  MATTACFIIVSRNDIPIYEAEVGVAAKREDAAQLHQFILHAALDIVQDLAWTTSAMYLKS 60

Query: 61 IDRFNDLVVSVYVTAGH----ILHTSTQINAM 88
          +DRFN+LVVSVYVTAGH    +LH S   + +
Sbjct: 61 VDRFNELVVSVYVTAGHTRLMLLHDSRNDDGI 92

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388505728|gb|AFK40930.1| unknown [Lotus japonicus]

 Score =  149 bits (377), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 72/92 (78%), Positives = 81/92 (88%), Gaps = 4/92 (4%)

Query: 1  MATTACFIIVSRNEIPIYEAEVGSAVKREDAAQLHQFILHAALDIVQDLAWTTSAMFLKA 60
          MATTACFIIVSRN+IPIYEAEVG A KREDAAQLHQFILHAALD+VQDLAWTTSAM+LK+
Sbjct: 1  MATTACFIIVSRNDIPIYEAEVGVAAKREDAAQLHQFILHAALDVVQDLAWTTSAMYLKS 60

Query: 61 IDRFNDLVVSVYVTAGH----ILHTSTQINAM 88
          +DRFN+LVVSVYVTAGH    +LH S   + +
Sbjct: 61 VDRFNELVVSVYVTAGHTRFMLLHDSRNDDGI 92

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	98
TAIR|locus:2198983	135	AT1G80500 "AT1G80500" [Arabido	0.836	0.607	0.848	9.5e-34
UNIPROTKB|G1K394	147	TRAPPC2 "Trafficking protein p	0.908	0.605	0.410	1.1e-14
UNIPROTKB|G5EA75	144	TRAPPC2 "Trafficking protein p	0.806	0.548	0.439	1.4e-14
UNIPROTKB|Q3T0F2	140	TRAPPC2 "Trafficking protein p	0.795	0.557	0.419	7.9e-14
UNIPROTKB|E2QV03	140	TRAPPC2 "Trafficking protein p	0.795	0.557	0.419	7.9e-14
UNIPROTKB|F5H785	113	TRAPPC2 "Trafficking protein p	0.795	0.690	0.419	7.9e-14
UNIPROTKB|P0DI81	140	TRAPPC2 "Trafficking protein p	0.795	0.557	0.419	7.9e-14
UNIPROTKB|P0DI82	140	TRAPPC2P1 "Trafficking protein	0.795	0.557	0.419	7.9e-14
UNIPROTKB|F1SRI0	140	TRAPPC2 "Trafficking protein p	0.795	0.557	0.419	7.9e-14
FB|FBgn0263604	139	l(3)72Dh "lethal (3) 72Dh" [Dr	0.775	0.546	0.481	1e-13

TAIR|locus:2198983 AT1G80500 "AT1G80500" [Arabidopsis thaliana (taxid:3702)]

 Score = 367 (134.2 bits), Expect = 9.5e-34, P = 9.5e-34
 Identities = 73/86 (84%), Positives = 78/86 (90%)

Query:     1 MATTACFIIVSRNEIPIYEAEVGSAVKREDAAQLHQFILHAALDIVQDLAWTTSAMFLKA 60
             MA TACFIIV RN+IPIYEAEVGSA KREDAAQLHQFILHAALD+VQDLAWTTSAMFLK+
Sbjct:     1 MANTACFIIVGRNDIPIYEAEVGSAAKREDAAQLHQFILHAALDVVQDLAWTTSAMFLKS 60

Query:    61 IDRFNDLVVSVYVTAGH----ILHTS 82
             +DRFNDLVVSVYVTAGH    +LH S
Sbjct:    61 VDRFNDLVVSVYVTAGHTRLMLLHDS 86

GO:0003674 "molecular_function" evidence=ND

GO:0005622 "intracellular" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0006810 "transport" evidence=IEA

GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=IEA

UNIPROTKB|G1K394 TRAPPC2 "Trafficking protein particle complex subunit 2" [Homo sapiens (taxid:9606)]

 Score = 187 (70.9 bits), Expect = 1.1e-14, P = 1.1e-14
 Identities = 39/95 (41%), Positives = 61/95 (64%)

Query:     1 MATTACFIIVSRNEIPIYEAE---VGSAVKREDAAQLHQFILHAALDIVQDLAWTTSAMF 57
             M+ +  F+IV  ++ P++E E    G A  ++D   L+QFI HAALD+V +  W ++ M+
Sbjct:     1 MSGSFYFVIVGHHDNPVFEMEFLPAGKAESKDDHRHLNQFIAHAALDLVDENMWLSNNMY 60

Query:    58 LKAIDRFNDLVVSVYVTAGHILHTSTQINAMTFLL 92
             LK +D+FN+  VS +VTAGHIL   T +  M F++
Sbjct:    61 LKTVDKFNEWFVSAFVTAGHIL---TFLVKMRFIM 92

GO:0005622 "intracellular" evidence=IEA

GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=IEA

UNIPROTKB|G5EA75 TRAPPC2 "Trafficking protein particle complex subunit 2" [Sus scrofa (taxid:9823)]

 Score = 186 (70.5 bits), Expect = 1.4e-14, P = 1.4e-14
 Identities = 36/82 (43%), Positives = 55/82 (67%)

Query:     1 MATTACFIIVSRNEIPIYEAE---VGSAVKREDAAQLHQFILHAALDIVQDLAWTTSAMF 57
             M+ +  F+IV  ++ P++E E    G A  ++D   L+QFI HAALD+V +  W ++ M+
Sbjct:     1 MSGSFYFVIVGHHDNPVFEMEFLPAGKAESKDDHRHLNQFIAHAALDLVDENMWLSNNMY 60

Query:    58 LKAIDRFNDLVVSVYVTAGHIL 79
             LK +D+FN+  VS +VTAGHIL
Sbjct:    61 LKTVDKFNEWFVSAFVTAGHIL 82

GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

UNIPROTKB|Q3T0F2 TRAPPC2 "Trafficking protein particle complex subunit 2" [Bos taurus (taxid:9913)]

 Score = 179 (68.1 bits), Expect = 7.9e-14, P = 7.9e-14
 Identities = 34/81 (41%), Positives = 54/81 (66%)

Query:     1 MATTACFIIVSRNEIPIYEAE---VGSAVKREDAAQLHQFILHAALDIVQDLAWTTSAMF 57
             M+ +  F+IV  ++ P++E E    G A  ++D   L+QFI HAALD+V +  W ++ M+
Sbjct:     1 MSGSFYFVIVGHHDNPVFEMEFLPAGKAESKDDHRHLNQFIAHAALDLVDENMWLSNNMY 60

Query:    58 LKAIDRFNDLVVSVYVTAGHI 78
             LK +D+FN+  VS +VTAGH+
Sbjct:    61 LKTVDKFNEWFVSAFVTAGHM 81

GO:0048471 "perinuclear region of cytoplasm" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0005783 "endoplasmic reticulum" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=IEA

UNIPROTKB|E2QV03 TRAPPC2 "Trafficking protein particle complex subunit 2" [Canis lupus familiaris (taxid:9615)]

 Score = 179 (68.1 bits), Expect = 7.9e-14, P = 7.9e-14
 Identities = 34/81 (41%), Positives = 54/81 (66%)

Query:     1 MATTACFIIVSRNEIPIYEAE---VGSAVKREDAAQLHQFILHAALDIVQDLAWTTSAMF 57
             M+ +  F+IV  ++ P++E E    G A  ++D   L+QFI HAALD+V +  W ++ M+
Sbjct:     1 MSGSFYFVIVGHHDNPVFEMEFLPAGKAESKDDHRHLNQFIAHAALDLVDENMWLSNNMY 60

Query:    58 LKAIDRFNDLVVSVYVTAGHI 78
             LK +D+FN+  VS +VTAGH+
Sbjct:    61 LKTVDKFNEWFVSAFVTAGHM 81

GO:0048471 "perinuclear region of cytoplasm" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0005783 "endoplasmic reticulum" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=IEA

UNIPROTKB|F5H785 TRAPPC2 "Trafficking protein particle complex subunit 2" [Homo sapiens (taxid:9606)]

 Score = 179 (68.1 bits), Expect = 7.9e-14, P = 7.9e-14
 Identities = 34/81 (41%), Positives = 54/81 (66%)

Query:     1 MATTACFIIVSRNEIPIYEAE---VGSAVKREDAAQLHQFILHAALDIVQDLAWTTSAMF 57
             M+ +  F+IV  ++ P++E E    G A  ++D   L+QFI HAALD+V +  W ++ M+
Sbjct:     1 MSGSFYFVIVGHHDNPVFEMEFLPAGKAESKDDHRHLNQFIAHAALDLVDENMWLSNNMY 60

Query:    58 LKAIDRFNDLVVSVYVTAGHI 78
             LK +D+FN+  VS +VTAGH+
Sbjct:    61 LKTVDKFNEWFVSAFVTAGHM 81

GO:0005622 "intracellular" evidence=IEA

GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=IEA

UNIPROTKB|P0DI81 TRAPPC2 "Trafficking protein particle complex subunit 2" [Homo sapiens (taxid:9606)]

 Score = 179 (68.1 bits), Expect = 7.9e-14, P = 7.9e-14
 Identities = 34/81 (41%), Positives = 54/81 (66%)

Query:     1 MATTACFIIVSRNEIPIYEAE---VGSAVKREDAAQLHQFILHAALDIVQDLAWTTSAMF 57
             M+ +  F+IV  ++ P++E E    G A  ++D   L+QFI HAALD+V +  W ++ M+
Sbjct:     1 MSGSFYFVIVGHHDNPVFEMEFLPAGKAESKDDHRHLNQFIAHAALDLVDENMWLSNNMY 60

Query:    58 LKAIDRFNDLVVSVYVTAGHI 78
             LK +D+FN+  VS +VTAGH+
Sbjct:    61 LKTVDKFNEWFVSAFVTAGHM 81

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005783 "endoplasmic reticulum" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0008134 "transcription factor binding" evidence=IPI

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IDA

GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=NAS

GO:0005515 "protein binding" evidence=IPI

GO:0001501 "skeletal system development" evidence=IMP

GO:0044325 "ion channel binding" evidence=IPI

GO:0048471 "perinuclear region of cytoplasm" evidence=IDA

UNIPROTKB|P0DI82 TRAPPC2P1 "Trafficking protein particle complex subunit 2 protein TRAPPC2P1" [Homo sapiens (taxid:9606)]

 Score = 179 (68.1 bits), Expect = 7.9e-14, P = 7.9e-14
 Identities = 34/81 (41%), Positives = 54/81 (66%)

Query:     1 MATTACFIIVSRNEIPIYEAE---VGSAVKREDAAQLHQFILHAALDIVQDLAWTTSAMF 57
             M+ +  F+IV  ++ P++E E    G A  ++D   L+QFI HAALD+V +  W ++ M+
Sbjct:     1 MSGSFYFVIVGHHDNPVFEMEFLPAGKAESKDDHRHLNQFIAHAALDLVDENMWLSNNMY 60

Query:    58 LKAIDRFNDLVVSVYVTAGHI 78
             LK +D+FN+  VS +VTAGH+
Sbjct:    61 LKTVDKFNEWFVSAFVTAGHM 81

GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=IEA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005783 "endoplasmic reticulum" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0048471 "perinuclear region of cytoplasm" evidence=IEA

UNIPROTKB|F1SRI0 TRAPPC2 "Trafficking protein particle complex subunit 2" [Sus scrofa (taxid:9823)]

 Score = 179 (68.1 bits), Expect = 7.9e-14, P = 7.9e-14
 Identities = 34/81 (41%), Positives = 54/81 (66%)

Query:     1 MATTACFIIVSRNEIPIYEAE---VGSAVKREDAAQLHQFILHAALDIVQDLAWTTSAMF 57
             M+ +  F+IV  ++ P++E E    G A  ++D   L+QFI HAALD+V +  W ++ M+
Sbjct:     1 MSGSFYFVIVGHHDNPVFEMEFLPAGKAESKDDHRHLNQFIAHAALDLVDENMWLSNNMY 60

Query:    58 LKAIDRFNDLVVSVYVTAGHI 78
             LK +D+FN+  VS +VTAGH+
Sbjct:    61 LKTVDKFNEWFVSAFVTAGHM 81

GO:0048471 "perinuclear region of cytoplasm" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0005783 "endoplasmic reticulum" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=IEA

FB|FBgn0263604 l(3)72Dh "lethal (3) 72Dh" [Drosophila melanogaster (taxid:7227)]

 Score = 178 (67.7 bits), Expect = 1.0e-13, P = 1.0e-13
 Identities = 38/79 (48%), Positives = 51/79 (64%)

Query:     3 TTACFIIVSRNEIPIYEAE---VGSAVKREDAAQLHQFILHAALDIVQDLAWTTSAMFLK 59
             +T  F+IV +N+ PIYE E   V   +++ED   L QFI HAALD+V +  W T+ M LK
Sbjct:     2 STYYFVIVGQNDNPIYEKEFSTVNKELRKEDHRHLTQFIAHAALDLVDEHKWKTANMQLK 61

Query:    60 AIDRFNDLVVSVYVTAGHI 78
             +IDRFN   VS ++TA  I
Sbjct:    62 SIDRFNQWFVSAFITASQI 80

GO:0003674 "molecular_function" evidence=ND

GO:0005622 "intracellular" evidence=IEA

GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=IEA

GO:0007224 "smoothened signaling pathway" evidence=IGI

GO:0033227 "dsRNA transport" evidence=IMP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	98
pfam04628	127	pfam04628, Sedlin_N, Sedlin, N-terminal conserved	1e-28
COG5603	136	COG5603, TRS20, Subunit of TRAPP, an ER-Golgi teth	8e-14

>gnl|CDD|218183 pfam04628, Sedlin_N, Sedlin, N-terminal conserved region

 Score = 99.6 bits (249), Expect = 1e-28
 Identities = 38/89 (42%), Positives = 50/89 (56%), Gaps = 4/89 (4%)

Query: 9  IVSRNEIPIYEAEVGSAVKREDAAQLHQFILHAALDIVQDLAWTTSAMFLKAIDRFNDLV 68
          I+ + + P+YE E  S  K      L+QFI HA+LDIV++L W T+ M+L  +D FNDL 
Sbjct: 1  IIGKKDNPLYEQEFSSEGKTSIPKHLNQFIAHASLDIVEELQWKTNNMYLGLVDSFNDLA 60

Query: 69 VSVYVTAGHI----LHTSTQINAMTFLLF 93
          VS YVT  HI    LH S+         F
Sbjct: 61 VSGYVTNTHIKFILLHDSSTERDDDIKQF 89

Mutations in this protein are associated with the X-linked spondyloepiphyseal dysplasia tarda syndrome (OMIM:313400). This family represents an N-terminal conserved region. Length = 127

>gnl|CDD|227890 COG5603, TRS20, Subunit of TRAPP, an ER-Golgi tethering complex [Cell motility and secretion]

 Score = 61.8 bits (150), Expect = 8e-14
 Identities = 25/74 (33%), Positives = 37/74 (50%), Gaps = 3/74 (4%)

Query: 4  TACFIIVSRNEIPIYEAEVGSAVK---REDAAQLHQFILHAALDIVQDLAWTTSAMFLKA 60
               I+   + P+YE E     K    E    L+QFI+HA+LDIV  L W+ +  +   
Sbjct: 2  GEYLAIIGEKDNPVYEREYDPINKTSDGEYCRLLNQFIIHASLDIVVWLQWSVNTSYFDC 61

Query: 61 IDRFNDLVVSVYVT 74
          +D F DL +S Y+ 
Sbjct: 62 LDSFGDLRISAYIM 75

Length = 136

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	98
KOG3487	139	consensus TRAPP 20 K subunit [Intracellular traffi	100.0
PF04628	132	Sedlin_N: Sedlin, N-terminal conserved region; Int	99.95
COG5603	136	TRS20 Subunit of TRAPP, an ER-Golgi tethering comp	99.93
KOG3444	121	consensus Uncharacterized conserved protein [Funct	99.89
PF04099	142	Sybindin: Sybindin-like family ; InterPro: IPR0072	93.27

>KOG3487 consensus TRAPP 20 K subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=1.3e-34  Score=207.14  Aligned_cols=84  Identities=51%  Similarity=0.847  Sum_probs=78.4

Q ss_pred             EEEEEEcCCCCeeEEEEccC----CCCchhHHHHHHHHHHhhhhhhHHhhhhcCccccccccccCCeEEEEEEeCCceEE
Q 034321            5 ACFIIVSRNEIPIYEAEVGS----AVKREDAAQLHQFILHAALDIVQDLAWTTSAMFLKAIDRFNDLVVSVYVTAGHILH   80 (98)
Q Consensus         5 ~~faIVG~~d~PLYe~~~~s----~~~~~~~~~l~qfI~HaSLDvVeE~~w~~~~mYLk~lD~f~~~~VsayVT~t~iKF   80 (98)
                      .||||||++|+|+||.|++.    ..++++.++++|||+|||||+|||.+|++++||||.||+||||.||||||+|||||
T Consensus         3 ~yfaIig~~d~Pvye~e~~~~~~~~~~~~~~~~LN~FI~HAaLdiVde~~W~~snmYLktVDkfne~~VSAyvTas~i~f   82 (139)
T KOG3487|consen    3 AYFAIIGHCDNPVYEMEFGCPENSKAARDDNRHLNQFIVHAALDIVDELQWTTSNMYLKTVDKFNELFVSAYVTASHIRF   82 (139)
T ss_pred             eEEEEEecCCCceEEeecCCCCcccccchhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhcceeEEEEEccCcEEE
Confidence            49999999999999999993    33578899999999999999999999999999999999999999999999999999


Q ss_pred             EEeehhhh
Q 034321           81 TSTQINAM   88 (98)
Q Consensus        81 i~~~~~~~   88 (98)
                      +...+|-.
T Consensus        83 ~mlh~~~~   90 (139)
T KOG3487|consen   83 IMLHINRA   90 (139)
T ss_pred             EEEeeccc
Confidence            99988753

>PF04628 Sedlin_N: Sedlin, N-terminal conserved region; InterPro: IPR006722 Sedlin is a 140 amino-acid protein with a putative role in endoplasmic reticulum-to-Golgi transport

Probab=99.95  E-value=3.3e-28  Score=170.65  Aligned_cols=76  Identities=34%  Similarity=0.555  Sum_probs=63.3

Q ss_pred             EEcCCCCeeEEEEccCCCCch--hHHHHHHHHHHhhhhhhHHhhhh-cCccccccccccCCeEEEEEEeCCceEEEEee
Q 034321            9 IVSRNEIPIYEAEVGSAVKRE--DAAQLHQFILHAALDIVQDLAWT-TSAMFLKAIDRFNDLVVSVYVTAGHILHTSTQ   84 (98)
Q Consensus         9 IVG~~d~PLYe~~~~s~~~~~--~~~~l~qfI~HaSLDvVeE~~w~-~~~mYLk~lD~f~~~~VsayVT~t~iKFi~~~   84 (98)
                      |||++|+|||++++++++...  +.+++.||++|+|||++||++|+ +++||||.||++++|+||||+|+|++|||...
T Consensus         1 IIg~~n~PLy~~~~~~~~~~~~~~~~~l~~~~~h~sLD~iee~~~~~~~~~yLg~l~~~~~~~vygyvT~t~~Kfvl~~   79 (132)
T PF04628_consen    1 IIGPNNNPLYIRSFPSEKESSSSDARHLYQFIAHSSLDVIEEKLWKSSSDMYLGLLDPFEDYKVYGYVTNTGIKFVLVH   79 (132)
T ss_dssp             EE-TTS-EEEEEEE--ST-CGHHHHHHHHHHHHHHHHHHHHHCCHCSSSCSEEEEEEEETTEEEEEEETTT--EEEEEE
T ss_pred             CCCCCCcceEEEecCCCcccccchHHHHHHHHHHHHHHHHHHHHhhcccccccCceehhhhHHHHhhhccCceeEEEEE
Confidence            899999999999999866433  24677999999999999999999 99999999999999999999999999999865

Several missense mutations and deletion mutations in the SEDL gene, which result in protein truncation by frame shift, are responsible for spondyloepiphyseal dysplasia tarda, a progressive skeletal disorder (OMIM:313400). [].; GO: 0006888 ER to Golgi vesicle-mediated transport, 0005622 intracellular; PDB: 3PR6_A 2J3W_A 1H3Q_A.

>COG5603 TRS20 Subunit of TRAPP, an ER-Golgi tethering complex [Cell motility and secretion]

Probab=99.93  E-value=1.4e-26  Score=164.56  Aligned_cols=83  Identities=30%  Similarity=0.540  Sum_probs=76.4

Q ss_pred             eEEEEEEcCCCCeeEEEEccC---CCCchhHHHHHHHHHHhhhhhhHHhhhhcCccccccccccCCeEEEEEEeCCceEE
Q 034321            4 TACFIIVSRNEIPIYEAEVGS---AVKREDAAQLHQFILHAALDIVQDLAWTTSAMFLKAIDRFNDLVVSVYVTAGHILH   80 (98)
Q Consensus         4 ~~~faIVG~~d~PLYe~~~~s---~~~~~~~~~l~qfI~HaSLDvVeE~~w~~~~mYLk~lD~f~~~~VsayVT~t~iKF   80 (98)
                      ..|+||||++|+|+||++++.   ..+++..++++|||+|||||+||.++|+.|..|+|.+|.|.+..||||++|+++||
T Consensus         2 ~~y~aIIg~KdnpVYe~e~~~~n~~~d~~~~~~ln~fiihaSlDiv~~lqwsvN~~Y~~~~d~f~~l~IsAYi~pSgmkf   81 (136)
T COG5603           2 GEYLAIIGEKDNPVYEREYDPINKTSDGEYCRLLNQFIIHASLDIVVWLQWSVNTSYFDCLDSFGDLRISAYIMPSGMKF   81 (136)
T ss_pred             CceEEEEecCCCceeeeeecCcCcccCHHHHHHHhHHhhhhhHHHHHHHHHHhhhHHHHHHHhhCCeEEEEEEccCCceE
Confidence            358999999999999999994   34577889999999999999999999999999999999999999999999999999


Q ss_pred             EEeehh
Q 034321           81 TSTQIN   86 (98)
Q Consensus        81 i~~~~~   86 (98)
                      +...-|
T Consensus        82 ~~iH~n   87 (136)
T COG5603          82 LFIHQN   87 (136)
T ss_pred             EEEecc
Confidence            987633

>KOG3444 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.89  E-value=2.2e-23  Score=146.12  Aligned_cols=77  Identities=16%  Similarity=0.325  Sum_probs=69.2

Q ss_pred             eEEEEEEcCCCCeeEEEEccCCCCchhHHHHHHHHHHhhhhhhHHhhhh-------cCccccccccccCCeEEEEEEeCC
Q 034321            4 TACFIIVSRNEIPIYEAEVGSAVKREDAAQLHQFILHAALDIVQDLAWT-------TSAMFLKAIDRFNDLVVSVYVTAG   76 (98)
Q Consensus         4 ~~~faIVG~~d~PLYe~~~~s~~~~~~~~~l~qfI~HaSLDvVeE~~w~-------~~~mYLk~lD~f~~~~VsayVT~t   76 (98)
                      .+|++++|++|+|||.+.++.    .|.+...||.+|+|||+|||+...       ++++|||++++.++|+||||+|||
T Consensus         2 ~v~~av~g~kn~~lyi~s~t~----~e~~L~~~y~v~~sLDVieekvn~~gkg~~tsne~fLGLLy~ted~kvYgfvtNT   77 (121)
T KOG3444|consen    2 LVCLAVAGPKNEPLYIESITP----KEKELKLHYQVHLSLDVIEEKVNDPGKGERTSNELFLGLLYPTEDYKVYGFVTNT   77 (121)
T ss_pred             EEEEEEEcCCCCccEEEecCc----HHHHHHhHhhhhhhHHHHHHHhcCcccCccchhhhhhcccccccceeEEEEEecc
Confidence            579999999999999999853    356677899999999999999853       479999999999999999999999


Q ss_pred             ceEEEEee
Q 034321           77 HILHTSTQ   84 (98)
Q Consensus        77 ~iKFi~~~   84 (98)
                      ++|||..-
T Consensus        78 kVKFIlvv   85 (121)
T KOG3444|consen   78 KVKFILVV   85 (121)
T ss_pred             EEEEEEEE
Confidence            99999864

>PF04099 Sybindin: Sybindin-like family ; InterPro: IPR007233 Sybindin is a physiological syndecan-2 ligand on dendritic spines, the small protrusions on the surface of dendrites that receive the vast majority of excitatory synapses

Probab=93.27  E-value=1.9  Score=30.55  Aligned_cols=79  Identities=10%  Similarity=-0.011  Sum_probs=42.8

Q ss_pred             EEEEEEcCCCCeeEEEEccCCC-----CchhHHHHHHHHHHhhhhhhHHhhhhc-------CccccccccccCCeEEEEE
Q 034321            5 ACFIIVSRNEIPIYEAEVGSAV-----KREDAAQLHQFILHAALDIVQDLAWTT-------SAMFLKAIDRFNDLVVSVY   72 (98)
Q Consensus         5 ~~faIVG~~d~PLYe~~~~s~~-----~~~~~~~l~qfI~HaSLDvVeE~~w~~-------~~mYLk~lD~f~~~~Vsay   72 (98)
                      +.|-|+++...-+|-+++....     +..+.+.+.=+=.--||-.+=.++.-.       +.-.++. ...+.|++..|
T Consensus         2 yslyI~nr~G~lIy~~~~~~~~~~~~~~~~~ne~~ll~g~l~sl~~i~~klsp~~~~~~~~~~~g~~~-~~T~~yklh~~   80 (142)
T PF04099_consen    2 YSLYIFNRSGGLIYYREWNRSKNEGQPKLSSNEYKLLAGMLHSLKAIASKLSPVDSKPNEPGSSGFES-FETDTYKLHCF   80 (142)
T ss_dssp             EEEEEE-TTS-EEEEEETSSSS--E-SSSCHHHHHHHHHHHHHHHHHHHHT-SSSSSS-SSS--SEEE-EEESS-EEEEE
T ss_pred             eEEEEEeCCcceeeehhhCCCCccccCCCChhHHHHHHhhHHHHHHHHHHhCCCCcccccccceeEEE-EEeCCEEEEEE
Confidence            5688999999999999998643     112222211122223444444443321       1112322 34678999999


Q ss_pred             EeCCceEEEEee
Q 034321           73 VTAGHILHTSTQ   84 (98)
Q Consensus        73 VT~t~iKFi~~~   84 (98)
                      -|+|++|||+.-
T Consensus        81 eT~TGlKFvl~t   92 (142)
T PF04099_consen   81 ETPTGLKFVLIT   92 (142)
T ss_dssp             E-TTS-EEEEEE
T ss_pred             EcCcCcEEEEEe
Confidence            999999999864

Syndecan-2 induces spine formation by recruiting intracellular vesicles toward postsynaptic sites through the interaction with synbindin []. ; GO: 0006888 ER to Golgi vesicle-mediated transport, 0005801 cis-Golgi network; PDB: 3CUE_C 2J3T_C 2ZMV_B 2JSN_A.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	98
1h3q_A	140	Crystal Sturcture Of Sedl At 2.4 Angstroms Resoluti		4e-15
2j3w_A	142	The Crystal Structure Of The Bet3-Trs31-Sedlin Comp		4e-15

>pdb|1H3Q|A Chain A, Crystal Sturcture Of Sedl At 2.4 Angstroms Resolution Length = 140

Iteration: 1
 Score = 76.3 bits (186), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 34/81 (41%), Positives = 54/81 (66%), Gaps = 3/81 (3%)
Query: 1  MATTACFIIVSRNEIPIYEAEV---GSAVKREDAAQLHQFILHAALDIVQDLAWTTSAMF 57
          M+ +  F+IV  ++ P++E E    G A  ++D   L+QFI HAALD+V +  W ++ M+
Sbjct: 1  MSGSFYFVIVGHHDNPVFEMEFLPPGKAESKDDHRHLNQFIAHAALDLVDENMWLSNNMY 60
Query: 58 LKAIDRFNDLVVSVYVTAGHI 78
          LK +D+FN+  VS +VTAGH+
Sbjct: 61 LKTVDKFNEWFVSAFVTAGHM 81

>pdb|2J3W|A Chain A, The Crystal Structure Of The Bet3-Trs31-Sedlin Complex. Length = 142

Iteration: 1
 Score = 76.3 bits (186), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 34/81 (41%), Positives = 54/81 (66%), Gaps = 3/81 (3%)
Query: 1  MATTACFIIVSRNEIPIYEAEV---GSAVKREDAAQLHQFILHAALDIVQDLAWTTSAMF 57
          M+ +  F+IV  ++ P++E E    G A  ++D   L+QFI HAALD+V +  W ++ M+
Sbjct: 3  MSGSFYFVIVGHHDNPVFEMEFLPPGKAESKDDHRHLNQFIAHAALDLVDENMWLSNNMY 62
Query: 58 LKAIDRFNDLVVSVYVTAGHI 78
          LK +D+FN+  VS +VTAGH+
Sbjct: 63 LKTVDKFNEWFVSAFVTAGHM 83

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	98
2j3w_A	142	Sedlin, trafficking protein particle complex prote	1e-21
3pr6_A	162	Trapp-associated protein TCA17; longin fold, vesic	2e-04

>2j3w_A Sedlin, trafficking protein particle complex protein 2; multisubunit tethering factor, trapp, palmitate, transport, lipoprotein; HET: PLM; 2.1A {Mus musculus} SCOP: d.110.4.3 PDB: 1h3q_A Length = 142

 Score = 81.6 bits (201), Expect = 1e-21
 Identities = 33/81 (40%), Positives = 53/81 (65%), Gaps = 3/81 (3%)

Query: 1  MATTACFIIVSRNEIPIYEAEVGS---AVKREDAAQLHQFILHAALDIVQDLAWTTSAMF 57
          M+ +  F+IV  ++ P++E E      A  ++D   L+QFI HAALD+V +  W ++ M+
Sbjct: 3  MSGSFYFVIVGHHDNPVFEMEFLPPGKAESKDDHRHLNQFIAHAALDLVDENMWLSNNMY 62

Query: 58 LKAIDRFNDLVVSVYVTAGHI 78
          LK +D+FN+  VS +VTAGH+
Sbjct: 63 LKTVDKFNEWFVSAFVTAGHM 83

>3pr6_A Trapp-associated protein TCA17; longin fold, vesicle tethering regulation, trapp complex, TR network, transport protein; 1.80A {Saccharomyces cerevisiae} Length = 162

 Score = 36.9 bits (85), Expect = 2e-04
 Identities = 13/75 (17%), Positives = 28/75 (37%), Gaps = 3/75 (4%)

Query: 1  MATTACFI-IVSRNEIPIYEAEVGSAVKREDAAQLHQFILHAALDIVQD--LAWTTSAMF 57
          M+   CF+ ++  ++ PI       A    +    +  + + +LD  +   + W +    
Sbjct: 6  MSLRPCFVSLIDESDKPILIYVPNEAENEMNDVLKYNVLSNISLDYFESALVEWHSLDSK 65

Query: 58 LKAIDRFNDLVVSVY 72
                F    VSV+
Sbjct: 66 PLLKSIFQLEGVSVF 80

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	98
2j3w_A	142	Sedlin, trafficking protein particle complex prote	99.94
3pr6_A	162	Trapp-associated protein TCA17; longin fold, vesic	99.91
2j3t_C	145	Trafficking protein particle complex subunit 1, tr	99.76
3cue_C	159	Transport protein particle 18 kDa subunit; membran	99.43
2j3t_D	219	Trafficking protein particle complex subunit 4; tr	99.35
3cue_A	219	Transport protein particle 23 kDa subunit; membran	95.92

>2j3w_A Sedlin, trafficking protein particle complex protein 2; multisubunit tethering factor, trapp, palmitate, transport, lipoprotein; HET: PLM; 2.1A {Mus musculus} SCOP: d.110.4.3 PDB: 1h3q_A

Probab=99.94  E-value=4.9e-27  Score=165.65  Aligned_cols=84  Identities=39%  Similarity=0.714  Sum_probs=77.4

Q ss_pred             CCceEEEEEEcCCCCeeEEEEccCCCC---chhHHHHHHHHHHhhhhhhHHhhhhcCccccccccccCCeEEEEEEeCCc
Q 034321            1 MATTACFIIVSRNEIPIYEAEVGSAVK---REDAAQLHQFILHAALDIVQDLAWTTSAMFLKAIDRFNDLVVSVYVTAGH   77 (98)
Q Consensus         1 m~~~~~faIVG~~d~PLYe~~~~s~~~---~~~~~~l~qfI~HaSLDvVeE~~w~~~~mYLk~lD~f~~~~VsayVT~t~   77 (98)
                      |++++||+|||++|+|||++++++.++   +++.+++.||++|+|||++||+.|+++++|||.+|+|++|+||||+|+|+
T Consensus         3 M~~i~~~~Ii~~~~~ply~~~~~~~~~~~~~~~~~l~~~~i~hs~ldiv~~~~~~~~~~~l~~~~~~~~y~v~~~~T~tg   82 (142)
T 2j3w_A            3 MSGSFYFVIVGHHDNPVFEMEFLPPGKAESKDDHRHLNQFIAHAALDLVDENMWLSNNMYLKTVDKFNEWFVSAFVTAGH   82 (142)
T ss_dssp             CCCCEEEEEECTTSCEEEEEEECCSCCGGGHHHHHHHHHHHHHHHHHHHHHHGGGCSCSEEEEEEEETTEEEEEEECTTC
T ss_pred             cceEEEEEEEeCCCCEEEEEecCCcCcCCccHHHHHHHHHHHHHHHHHHHHhcCCCCcceeEeeecccceEEEEEEcCCC
Confidence            778999999999999999999987543   45677888999999999999999999999999999999999999999999


Q ss_pred             eEEEEee
Q 034321           78 ILHTSTQ   84 (98)
Q Consensus        78 iKFi~~~   84 (98)
                      +|||...
T Consensus        83 ~Kfvl~~   89 (142)
T 2j3w_A           83 MRFIMLH   89 (142)
T ss_dssp             CEEEEEE
T ss_pred             cEEEEEe
Confidence            9998754

>3pr6_A Trapp-associated protein TCA17; longin fold, vesicle tethering regulation, trapp complex, TR network, transport protein; 1.80A {Saccharomyces cerevisiae}

Probab=99.91  E-value=5.6e-25  Score=160.73  Aligned_cols=79  Identities=13%  Similarity=0.148  Sum_probs=65.8

Q ss_pred             EEEEEcCCCCeeEEEEccCCCCchhHHHHHHHHHHhhhhhhHHhh--hhcCc--cccccccccCCeEEEEEE-eCCceEE
Q 034321            6 CFIIVSRNEIPIYEAEVGSAVKREDAAQLHQFILHAALDIVQDLA--WTTSA--MFLKAIDRFNDLVVSVYV-TAGHILH   80 (98)
Q Consensus         6 ~faIVG~~d~PLYe~~~~s~~~~~~~~~l~qfI~HaSLDvVeE~~--w~~~~--mYLk~lD~f~~~~VsayV-T~t~iKF   80 (98)
                      +++|||++|+|||++.+++.....+.....||++|+|||++||++  |++++  +|||+++++++++||||+ |+||+||
T Consensus        12 FVaIIg~~n~PLyI~~~~~~~~~~~~~Lk~~fi~hsSLDi~Ee~~~~~~s~~~~~~LglL~~~e~~~VYGy~iTnt~vKf   91 (162)
T 3pr6_A           12 FVSLIDESDKPILIYVPNEAENEMNDVLKYNVLSNISLDYFESALVEWHSLDSKPLLKSIFQLEGVSVFAMLIKQTGLKI   91 (162)
T ss_dssp             EEEEECTTSCEEEEECCC-------CHHHHHHHHHHHHHHHHCTTCCCCCSSSSCCCEEEEEETTEEEEEEECTTTCCEE
T ss_pred             EEEEECCCCceeEEEeCCCccccccchhHHHHHHHHHHHHHhhhhhhccccccccccceEeecCCeEEEEEEEcCCceEE
Confidence            567999999999999997754334455678999999999999999  98865  799999999999999997 9999999


Q ss_pred             EEee
Q 034321           81 TSTQ   84 (98)
Q Consensus        81 i~~~   84 (98)
                      |...
T Consensus        92 Vl~~   95 (162)
T 3pr6_A           92 VIGF   95 (162)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            9854

>2j3t_C Trafficking protein particle complex subunit 1, trafficking protein particle complex subunit 3; trapp, palmitate, transport, lipoprotein, ER-golgi transport apparatus, protein transport; HET: PLM; 2.4A {Mus musculus}

Probab=99.76  E-value=5.1e-18  Score=120.23  Aligned_cols=81  Identities=14%  Similarity=0.046  Sum_probs=70.4

Q ss_pred             ceEEEEEEcCCCCeeEEEEccCCC---Cc-hhHHHHHHHHHHhhhhhhHHhhhhcCccccccccccCCeEEEEEEeCCce
Q 034321            3 TTACFIIVSRNEIPIYEAEVGSAV---KR-EDAAQLHQFILHAALDIVQDLAWTTSAMFLKAIDRFNDLVVSVYVTAGHI   78 (98)
Q Consensus         3 ~~~~faIVG~~d~PLYe~~~~s~~---~~-~~~~~l~qfI~HaSLDvVeE~~w~~~~mYLk~lD~f~~~~VsayVT~t~i   78 (98)
                      +.+||+|||++|+|||++++++++   .. ++...+.++++|+..|++|+..|.++.++++.+ ++++|++++|+|+|++
T Consensus         2 ~i~~~~Ii~k~g~~iy~~~~~~~~~~~~~~~~~~~ll~g~~~Sl~~i~~klsp~~~~~~~~~~-~t~~ykl~~~~T~Tgi   80 (145)
T 2j3t_C            2 TVHNLYLFDRNGVCLHYSEWHRKKQAGIPKEEEYKLMYGMLFSIRSFVSKMSPLDMKDGFLSF-QTSRYKLHYYETPTGI   80 (145)
T ss_dssp             CEEEEEEECTTSCEEEEEESSCSSCCSSCHHHHHHHHHHHHHHHHHHHHHHCSSCCSSCEEEE-ECSSCEEEEEECTTSC
T ss_pred             eEEEEEEEeCCCCEEEeeeecCCCcCCCCcchHHHHHHHHHHHHHHHHHHhCCCCCCCceEEE-ecCCEEEEEEEcCCCC
Confidence            479999999999999999997643   12 344555699999999999999999899999988 8999999999999999


Q ss_pred             EEEEee
Q 034321           79 LHTSTQ   84 (98)
Q Consensus        79 KFi~~~   84 (98)
                      |||...
T Consensus        81 KFvl~t   86 (145)
T 2j3t_C           81 KVVMNT   86 (145)
T ss_dssp             EEEEEE
T ss_pred             EEEEEe
Confidence            998754

>3cue_C Transport protein particle 18 kDa subunit; membrane traffic, GEF, tethering complex, RAB activation, GU nucleotide exchange factor; HET: PLM; 3.70A {Saccharomyces cerevisiae}

Probab=99.43  E-value=1.6e-13  Score=98.68  Aligned_cols=80  Identities=20%  Similarity=0.144  Sum_probs=62.1

Q ss_pred             ceEEEEEEcCCCCeeEEEEccCC----------CCchhHHHHHHHHHHhhhhhhHHhhhhc-CccccccccccCCeEEEE
Q 034321            3 TTACFIIVSRNEIPIYEAEVGSA----------VKREDAAQLHQFILHAALDIVQDLAWTT-SAMFLKAIDRFNDLVVSV   71 (98)
Q Consensus         3 ~~~~faIVG~~d~PLYe~~~~s~----------~~~~~~~~l~qfI~HaSLDvVeE~~w~~-~~mYLk~lD~f~~~~Vsa   71 (98)
                      +.+||.|+|++++|||++++...          +.+++..++.+.++|+..+++++..|.+ .+-|  ...+.++|++++
T Consensus         2 ~i~~~~Ii~r~g~~iy~~~~~~~~~~~~~~~~~~~~~~~~~ll~g~~~SL~~i~~kls~~~~~~~f--~~~~T~~ykl~~   79 (159)
T 3cue_C            2 GIYSFWIFDRHCNCIFDREWTLASNSASGTINSKQNEEDAKLLYGMIFSLRSITQKLSKGSVKNDI--RSISTGKYRVHT   79 (159)
T ss_dssp             CCCEEEEECSSSCEEECCCC-------------CCHHHHHHHHHHHHHHHHHHHHHSCCSSSCCCE--EEEECSSCBEEE
T ss_pred             eEEEEEEEcCCCceEEeeeeccccccccccccCCCCchHHHHHHHHHHHHHHHHHHhCCCCCCCCe--EEEeeCCEEEEE
Confidence            47899999999999999999642          1235556778888888888888888875 2444  455678899999


Q ss_pred             EEeCCceEEEEee
Q 034321           72 YVTAGHILHTSTQ   84 (98)
Q Consensus        72 yVT~t~iKFi~~~   84 (98)
                      |.|+|++|||..-
T Consensus        80 ~eT~TgiKFvl~t   92 (159)
T 3cue_C           80 YCTASGLWFVLLS   92 (159)
T ss_dssp             ECCSSCCEEEEEC
T ss_pred             EEeCCCCEEEEEe
Confidence            9999999998753

>2j3t_D Trafficking protein particle complex subunit 4; trapp, palmitate, transport, lipoprotein, ER-golgi transport apparatus, protein transport; HET: PLM; 2.4A {Homo sapiens} PDB: 2zmv_A 2jsn_A

Probab=99.35  E-value=1e-12  Score=99.57  Aligned_cols=75  Identities=8%  Similarity=0.029  Sum_probs=59.4

Q ss_pred             EEEEcCCCCeeEEEEccCCCCchhHHHHHHHHHHhhhhhhHHhhhhcC-ccccccccccCCeEEEEEEeCCceEEEEee
Q 034321            7 FIIVSRNEIPIYEAEVGSAVKREDAAQLHQFILHAALDIVQDLAWTTS-AMFLKAIDRFNDLVVSVYVTAGHILHTSTQ   84 (98)
Q Consensus         7 faIVG~~d~PLYe~~~~s~~~~~~~~~l~qfI~HaSLDvVeE~~w~~~-~mYLk~lD~f~~~~VsayVT~t~iKFi~~~   84 (98)
                      ..|+|++|+|||++.+.+.. +++.+.+...++| |||++++++|..+ ...+..+ .+++|+++||+|+|++||+..-
T Consensus        84 ~~iigk~N~PLyir~f~~~l-~sn~~L~lag~lh-SLd~i~~klsp~~~s~g~~~~-~T~~ykl~~y~T~TgiKFVLlt  159 (219)
T 2j3t_D           84 EYLGNPANYPVSIRFGRPRL-TSNEKLMLASMFH-SLFAIGSQLSPEQGSSGIEML-ETDTFKLHCYQTLTGIKFVVLA  159 (219)
T ss_dssp             HHTTCGGGCSEEEEEECCCC-CHHHHHHHHHHHH-HHHHHHHHTCSSSSCCSCSEE-EESSCEEEEEECTTSCEEEEEE
T ss_pred             eeeecCCCCceEEEecCCCC-ChhHHHHHHHHHH-HHHHHHHHhCCCCCCCCeeEE-ecCceEEEEEEcCCCCEEEEEe
Confidence            45789999999999997642 2333444567999 9999999999753 4566555 6899999999999999998753

>3cue_A Transport protein particle 23 kDa subunit; membrane traffic, GEF, tethering complex, RAB activation, GU nucleotide exchange factor; HET: PLM; 3.70A {Saccharomyces cerevisiae}

Probab=95.92  E-value=0.081  Score=39.89  Aligned_cols=22  Identities=9%  Similarity=0.306  Sum_probs=19.4

Q ss_pred             ceEEEEEEcCCCCeeEEEEccC
Q 034321            3 TTACFIIVSRNEIPIYEAEVGS   24 (98)
Q Consensus         3 ~~~~faIVG~~d~PLYe~~~~s   24 (98)
                      +.+.+-|+.|...-+|-+++..
T Consensus         2 ~i~sl~IiNk~GglIY~r~~~~   23 (219)
T 3cue_A            2 AIETILVINKSGGLIYQRNFTN   23 (219)
T ss_dssp             CEEEEEEECTTSCEEEEEECSS
T ss_pred             eeEEEEEEeCCCCEEeehhhcc
Confidence            3678999999999999999974

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	98
d2j3wa1	140	d.110.4.3 (A:1-140) Sedlin (SEDL) {Mouse (Mus musc	1e-23

>d2j3wa1 d.110.4.3 (A:1-140) Sedlin (SEDL) {Mouse (Mus musculus) [TaxId: 10090]} Length = 140

class: Alpha and beta proteins (a+b)
fold: Profilin-like
superfamily: SNARE-like
family: Sedlin (SEDL)
domain: Sedlin (SEDL)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 85.3 bits (211), Expect = 1e-23
 Identities = 36/102 (35%), Positives = 58/102 (56%), Gaps = 7/102 (6%)

Query: 1   MATTACFIIVSRNEIPIYEAEVGSAVK---REDAAQLHQFILHAALDIVQDLAWTTSAMF 57
           M+ +  F+IV  ++ P++E E     K   ++D   L+QFI HAALD+V +  W ++ M+
Sbjct: 1   MSGSFYFVIVGHHDNPVFEMEFLPPGKAESKDDHRHLNQFIAHAALDLVDENMWLSNNMY 60

Query: 58  LKAIDRFNDLVVSVYVTAGHI----LHTSTQINAMTFLLFIF 95
           LK +D+FN+  VS +VTAGH+    LH   Q + +       
Sbjct: 61  LKTVDKFNEWFVSAFVTAGHMRFIMLHDVRQEDGIKNFFTDV 102

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	98
d2j3wa1	140	Sedlin (SEDL) {Mouse (Mus musculus) [TaxId: 10090]	99.97

>d2j3wa1 d.110.4.3 (A:1-140) Sedlin (SEDL) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Profilin-like
superfamily: SNARE-like
family: Sedlin (SEDL)
domain: Sedlin (SEDL)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.97  E-value=5.2e-31  Score=185.22  Aligned_cols=84  Identities=39%  Similarity=0.714  Sum_probs=78.6

Q ss_pred             CCceEEEEEEcCCCCeeEEEEccCCCC---chhHHHHHHHHHHhhhhhhHHhhhhcCccccccccccCCeEEEEEEeCCc
Q 034321            1 MATTACFIIVSRNEIPIYEAEVGSAVK---REDAAQLHQFILHAALDIVQDLAWTTSAMFLKAIDRFNDLVVSVYVTAGH   77 (98)
Q Consensus         1 m~~~~~faIVG~~d~PLYe~~~~s~~~---~~~~~~l~qfI~HaSLDvVeE~~w~~~~mYLk~lD~f~~~~VsayVT~t~   77 (98)
                      |++++||+|||++|+|||+++|+++++   +++.+++.||++|+|||++||++|+++++|||.+|++++|+||||+|+||
T Consensus         1 ~~~~y~f~IIg~~~~pLY~~ef~~~~~~~~~~~~~~~~~fi~hssLDive~~~~~~~~~~l~~l~~~~~~~v~~y~T~tg   80 (140)
T d2j3wa1           1 MSGSFYFVIVGHHDNPVFEMEFLPPGKAESKDDHRHLNQFIAHAALDLVDENMWLSNNMYLKTVDKFNEWFVSAFVTAGH   80 (140)
T ss_dssp             CCCCEEEEEECTTSCEEEEEEECCSCCGGGHHHHHHHHHHHHHHHHHHHHHHGGGCSCSEEEEEEEETTEEEEEEECTTC
T ss_pred             CccEEEEEEEcCCCCeeEEEecCCcccccccchHHHHHHHHHHHHHHHHHHhcccCCCccceeEEecCCEEEEEEEcCCC
Confidence            899999999999999999999987653   36678899999999999999999999999999999999999999999999


Q ss_pred             eEEEEee
Q 034321           78 ILHTSTQ   84 (98)
Q Consensus        78 iKFi~~~   84 (98)
                      +|||...
T Consensus        81 ~Kfvl~t   87 (140)
T d2j3wa1          81 MRFIMLH   87 (140)
T ss_dssp             CEEEEEE
T ss_pred             cEEEEEe
Confidence            9999863