Citrus Sinensis ID: 034327

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------10
Protein Sequence
MSETRPVPRRESPWGTPEGEHRQPKAHRCNDRAEDVIQACFEGNPFKTVPGPFKLFWQCMRSKPGEEPTEPFTYLQLDPPKREFVINDSKWMRNKIGL
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccHHHHHHHHHHHHHcccccccccHHHHHHHHHHcccccccccccEEcccccccccEEccHHHHHHHcccc
Secondary Structure Prediction (SSPRO)
cccccccccccccccccccccccccccccccHHHHHHHHHHcccccccccHHHHHHHHHHcccccccccccEEEEEccccccEEEEcHHHHHHHHccc
Coil and Loop (DISEMBL)
msetrpvprrespwgtpegehrqpkahrcndrAEDVIQACfegnpfktvpgpfkLFWQCmrskpgeeptepftylqldppkrefvindsKWMRNKIGL
Flexible Loop (DISEMBL)
msetrpvprrespwgtpegehrqpkahRCNDRAEDVIQACFEGNPFKTVPGPFKLFWQCMRSKPGEEPTEpftylqldppkrefvindskWMRNKIGL
Low Complexity Region (SEG)
MSETRPVPRRESPWGTPEGEHRQPKAHRCNDRAEDVIQACFEGNPFKTVPGPFKLFWQCMRSKPGEEPTEPFTYLQLDPPKREFVINDSKWMRNKIGL
Disordered region (IsUnstruct)
*********************************EDVIQACFEGNPFKTVPGPFKLFWQCMR************YL********FVI************
Disordered Region (DISOPRED)
*******************************RAEDVIQACFEGNPFKTVPGPFKLFWQCMRS****EPTEPFTYLQLDPPKREFVINDSKWMRNKI**
Disordered Region (DISEMBL)
*****************************NDRAEDVIQACFEGNPFKTVPGPFKLFWQCMRSKPGEEPTEPFTYLQLDPPKREFVINDSKWMRNKIGL
Disordered Region (DISPRO)
***************************RCNDRAEDVIQACFEGNPFKTVPGPFKLFWQCMRSKPGEEPTEPFTYLQLDPPKREFVINDSKWMRNKIGL
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MSETRPVPRRESPWGTPEGEHRQPKAHRCNDRAEDVIQACFEGNPFKTVPGPFKLFWQCMRSKPGEEPTEPFTYLQLDPPKREFVINDSKWMRNKIGL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	98
222636094	336	hypothetical protein OsJ_22378 [Oryza sa	0.867	0.252	0.894	2e-39
218198758	323	hypothetical protein OsI_24188 [Oryza sa	0.867	0.263	0.894	3e-39
225444355	86	PREDICTED: uncharacterized protein LOC10	0.846	0.965	0.927	7e-39
52076589	88	unknown protein [Oryza sativa Japonica G	0.867	0.965	0.894	4e-38
226497948	94	uncharacterized protein LOC100277459 [Ze	0.836	0.872	0.914	5e-38
413926861	154	hypothetical protein ZEAMMB73_590560, pa	0.836	0.532	0.914	6e-38
255568552	85	conserved hypothetical protein [Ricinus	0.836	0.964	0.914	6e-38
413926863	153	hypothetical protein ZEAMMB73_590560, pa	0.836	0.535	0.914	6e-38
242096746	94	hypothetical protein SORBIDRAFT_10g02744	0.836	0.872	0.902	9e-38
357123452	88	PREDICTED: uncharacterized protein LOC10	0.836	0.931	0.914	1e-37

>gi|222636094|gb|EEE66226.1| hypothetical protein OsJ_22378 [Oryza sativa Japonica Group]

 Score =  166 bits (419), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 76/85 (89%), Positives = 80/85 (94%)

Query: 1   MSETRPVPRRESPWGTPEGEHRQPKAHRCNDRAEDVIQACFEGNPFKTVPGPFKLFWQCM 60
           MSE RPVPRRESPWG PEG+ R+PKAHRCNDRAEDV+QACFEGNPFKTVPGPFKLFWQCM
Sbjct: 249 MSEGRPVPRRESPWGLPEGDKREPKAHRCNDRAEDVVQACFEGNPFKTVPGPFKLFWQCM 308

Query: 61  RSKPGEEPTEPFTYLQLDPPKREFV 85
           RSKPGEEPTEP+TYLQLDPPKR  V
Sbjct: 309 RSKPGEEPTEPYTYLQLDPPKRAEV 333

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|218198758|gb|EEC81185.1| hypothetical protein OsI_24188 [Oryza sativa Indica Group]

 Score =  165 bits (418), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 76/85 (89%), Positives = 80/85 (94%)

Query: 1   MSETRPVPRRESPWGTPEGEHRQPKAHRCNDRAEDVIQACFEGNPFKTVPGPFKLFWQCM 60
           MSE RPVPRRESPWG PEG+ R+PKAHRCNDRAEDV+QACFEGNPFKTVPGPFKLFWQCM
Sbjct: 236 MSEGRPVPRRESPWGLPEGDKREPKAHRCNDRAEDVVQACFEGNPFKTVPGPFKLFWQCM 295

Query: 61  RSKPGEEPTEPFTYLQLDPPKREFV 85
           RSKPGEEPTEP+TYLQLDPPKR  V
Sbjct: 296 RSKPGEEPTEPYTYLQLDPPKRAEV 320

Source: Oryza sativa Indica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225444355|ref|XP_002266186.1| PREDICTED: uncharacterized protein LOC100265882 [Vitis vinifera] gi|147833195|emb|CAN68644.1| hypothetical protein VITISV_030811 [Vitis vinifera] gi|302144080|emb|CBI23185.3| unnamed protein product [Vitis vinifera]

 Score =  164 bits (414), Expect = 7e-39,   Method: Compositional matrix adjust.
 Identities = 77/83 (92%), Positives = 80/83 (96%)

Query: 4  TRPVPRRESPWGTPEGEHRQPKAHRCNDRAEDVIQACFEGNPFKTVPGPFKLFWQCMRSK 63
          +RPVPRRESPWGTPEGEHRQPKAHRCNDRAEDVIQACFEGNPFKTVPGPFKLFWQCMRSK
Sbjct: 3  SRPVPRRESPWGTPEGEHRQPKAHRCNDRAEDVIQACFEGNPFKTVPGPFKLFWQCMRSK 62

Query: 64 PGEEPTEPFTYLQLDPPKREFVI 86
          PGEEPT+PF YLQLDPPKRE  +
Sbjct: 63 PGEEPTDPFHYLQLDPPKREVQL 85

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|52076589|dbj|BAD45491.1| unknown protein [Oryza sativa Japonica Group] gi|52076871|dbj|BAD45884.1| unknown protein [Oryza sativa Japonica Group] gi|215768296|dbj|BAH00525.1| unnamed protein product [Oryza sativa Japonica Group] gi|215768395|dbj|BAH00624.1| unnamed protein product [Oryza sativa Japonica Group]

 Score =  161 bits (408), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 76/85 (89%), Positives = 80/85 (94%)

Query: 1  MSETRPVPRRESPWGTPEGEHRQPKAHRCNDRAEDVIQACFEGNPFKTVPGPFKLFWQCM 60
          MSE RPVPRRESPWG PEG+ R+PKAHRCNDRAEDV+QACFEGNPFKTVPGPFKLFWQCM
Sbjct: 1  MSEGRPVPRRESPWGLPEGDKREPKAHRCNDRAEDVVQACFEGNPFKTVPGPFKLFWQCM 60

Query: 61 RSKPGEEPTEPFTYLQLDPPKREFV 85
          RSKPGEEPTEP+TYLQLDPPKR  V
Sbjct: 61 RSKPGEEPTEPYTYLQLDPPKRAEV 85

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|226497948|ref|NP_001144484.1| uncharacterized protein LOC100277459 [Zea mays] gi|226530389|ref|NP_001144046.1| uncharacterized protein LOC100276870 [Zea mays] gi|195636050|gb|ACG37493.1| hypothetical protein [Zea mays] gi|195642738|gb|ACG40837.1| hypothetical protein [Zea mays] gi|195659463|gb|ACG49199.1| hypothetical protein [Zea mays] gi|238006002|gb|ACR34036.1| unknown [Zea mays]

 Score =  161 bits (407), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 75/82 (91%), Positives = 79/82 (96%)

Query: 1  MSETRPVPRRESPWGTPEGEHRQPKAHRCNDRAEDVIQACFEGNPFKTVPGPFKLFWQCM 60
          MSE RPVPRRESPWG PEG+ RQPKAHRCNDRAEDV+QACFEGNPFKTVPGPFKLFWQCM
Sbjct: 1  MSEERPVPRRESPWGLPEGDTRQPKAHRCNDRAEDVVQACFEGNPFKTVPGPFKLFWQCM 60

Query: 61 RSKPGEEPTEPFTYLQLDPPKR 82
          RSKPGEEPTEP+TYLQLDPP+R
Sbjct: 61 RSKPGEEPTEPYTYLQLDPPRR 82

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|413926861|gb|AFW66793.1| hypothetical protein ZEAMMB73_590560, partial [Zea mays]

 Score =  161 bits (407), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 75/82 (91%), Positives = 79/82 (96%)

Query: 1   MSETRPVPRRESPWGTPEGEHRQPKAHRCNDRAEDVIQACFEGNPFKTVPGPFKLFWQCM 60
           MSE RPVPRRESPWG PEG+ RQPKAHRCNDRAEDV+QACFEGNPFKTVPGPFKLFWQCM
Sbjct: 61  MSEERPVPRRESPWGLPEGDTRQPKAHRCNDRAEDVVQACFEGNPFKTVPGPFKLFWQCM 120

Query: 61  RSKPGEEPTEPFTYLQLDPPKR 82
           RSKPGEEPTEP+TYLQLDPP+R
Sbjct: 121 RSKPGEEPTEPYTYLQLDPPRR 142

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255568552|ref|XP_002525250.1| conserved hypothetical protein [Ricinus communis] gi|223535547|gb|EEF37216.1| conserved hypothetical protein [Ricinus communis]

 Score =  161 bits (407), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 75/82 (91%), Positives = 79/82 (96%)

Query: 1  MSETRPVPRRESPWGTPEGEHRQPKAHRCNDRAEDVIQACFEGNPFKTVPGPFKLFWQCM 60
          MSETR VPRRESPWG  EG+HRQPKAHRCNDRAEDVIQACFEGNPFKTVPGPFKLFWQCM
Sbjct: 1  MSETREVPRRESPWGISEGQHRQPKAHRCNDRAEDVIQACFEGNPFKTVPGPFKLFWQCM 60

Query: 61 RSKPGEEPTEPFTYLQLDPPKR 82
          RSKPGEEPTEP+TYLQ++PPKR
Sbjct: 61 RSKPGEEPTEPYTYLQIEPPKR 82

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|413926863|gb|AFW66795.1| hypothetical protein ZEAMMB73_590560, partial [Zea mays]

 Score =  161 bits (407), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 75/82 (91%), Positives = 79/82 (96%)

Query: 1   MSETRPVPRRESPWGTPEGEHRQPKAHRCNDRAEDVIQACFEGNPFKTVPGPFKLFWQCM 60
           MSE RPVPRRESPWG PEG+ RQPKAHRCNDRAEDV+QACFEGNPFKTVPGPFKLFWQCM
Sbjct: 60  MSEERPVPRRESPWGLPEGDTRQPKAHRCNDRAEDVVQACFEGNPFKTVPGPFKLFWQCM 119

Query: 61  RSKPGEEPTEPFTYLQLDPPKR 82
           RSKPGEEPTEP+TYLQLDPP+R
Sbjct: 120 RSKPGEEPTEPYTYLQLDPPRR 141

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|242096746|ref|XP_002438863.1| hypothetical protein SORBIDRAFT_10g027440 [Sorghum bicolor] gi|241917086|gb|EER90230.1| hypothetical protein SORBIDRAFT_10g027440 [Sorghum bicolor]

 Score =  160 bits (405), Expect = 9e-38,   Method: Compositional matrix adjust.
 Identities = 74/82 (90%), Positives = 78/82 (95%)

Query: 1  MSETRPVPRRESPWGTPEGEHRQPKAHRCNDRAEDVIQACFEGNPFKTVPGPFKLFWQCM 60
          MS  RPVPRRESPWG PEG+ RQPKAHRCNDRAEDV+QACFEGNPFKTVPGPFKLFWQCM
Sbjct: 1  MSAERPVPRRESPWGLPEGDTRQPKAHRCNDRAEDVVQACFEGNPFKTVPGPFKLFWQCM 60

Query: 61 RSKPGEEPTEPFTYLQLDPPKR 82
          RSKPGEEPTEP+TYLQLDPP+R
Sbjct: 61 RSKPGEEPTEPYTYLQLDPPRR 82

Source: Sorghum bicolor

Species: Sorghum bicolor

Genus: Sorghum

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357123452|ref|XP_003563424.1| PREDICTED: uncharacterized protein LOC100844151 [Brachypodium distachyon]

 Score =  160 bits (404), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 75/82 (91%), Positives = 77/82 (93%)

Query: 1  MSETRPVPRRESPWGTPEGEHRQPKAHRCNDRAEDVIQACFEGNPFKTVPGPFKLFWQCM 60
          MSE RPVPRRESPWG PEG+ RQPKAHRCNDR EDV+QACFEGNPFKTVPGPFKLFWQCM
Sbjct: 1  MSEERPVPRRESPWGLPEGDKRQPKAHRCNDRVEDVVQACFEGNPFKTVPGPFKLFWQCM 60

Query: 61 RSKPGEEPTEPFTYLQLDPPKR 82
          RS PGEEPTEPFTYLQLDPPKR
Sbjct: 61 RSNPGEEPTEPFTYLQLDPPKR 82

Source: Brachypodium distachyon

Species: Brachypodium distachyon

Genus: Brachypodium

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	98
TAIR|locus:505006100	91	AT1G05205 "AT1G05205" [Arabido	0.908	0.978	0.822	4.8e-39

TAIR|locus:505006100 AT1G05205 "AT1G05205" [Arabidopsis thaliana (taxid:3702)]

 Score = 417 (151.9 bits), Expect = 4.8e-39, P = 4.8e-39
 Identities = 74/90 (82%), Positives = 81/90 (90%)

Query:     1 MSETRPVPRRESPWGTPEGEHRQPKAHRCNDRAEDVIQACFEGNPFKTVPGPFKLFWQCM 60
             MSETRPVPRRESPWG PEG HR+PKAHRCNDR EDVIQA FEGNPFKTVPGPFKLF++CM
Sbjct:     1 MSETRPVPRRESPWGLPEG-HREPKAHRCNDRVEDVIQALFEGNPFKTVPGPFKLFYRCM 59

Query:    61 RSKPGEEPTEPFTYLQLDPPKREFVINDSK 90
             RSKPGEEPTEPF YL L+PPKRE  + ++K
Sbjct:    60 RSKPGEEPTEPFKYLDLEPPKREVKLEEAK 89


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.318   0.138   0.463    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0       98        98   0.00091  102 3  12 22  0.42    30
                                                     29  0.45    31


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  529 (56 KB)
  Total size of DFA:  105 KB (2072 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  8.99u 0.23s 9.22t   Elapsed:  00:00:01
  Total cpu time:  8.99u 0.23s 9.22t   Elapsed:  00:00:01
  Start:  Fri May 10 21:15:05 2013   End:  Fri May 10 21:15:06 2013

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0009853 "photorespiration" evidence=RCA

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Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

No hit with probability above 80.00

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00