Citrus Sinensis ID: 034345

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------
Protein Sequence
MLLELYLFLMWLITLFQSQDVARDFGAACTPEFFLFKKDGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECVLSGQPVSSNQKPSIKWHPQTVQ
Secondary Structure (PSIPRED)
cHHHHHccccEEEEEEccHHHHHHHcccccccEEEEEccccccEEEEEEEEcccccccccccccHHHHHHHHHHHHccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cHHHHHHHHccccccHHHHHHHHHHHccccccEEEEcccccccEEEEEEcccccccccccccccHHHHHHHHHHHHccccccHcccccccEcccccc
Coil and Loop (DISEMBL)
MLLELYLFLMWLITLFQSQDVArdfgaactpefflfkkdgrrpfqlvyhgqfddsrpsnnlpvtgrDIRLAIECVlsgqpvssnqkpsikwhpqtvq
Flexible Loop (DISEMBL)
MLLELYLFLMWLITLFQSQDVARDFGAACTPEFflfkkdgrrPFQLVYhgqfddsrpsnnLPVTGRDIRLAIECVLSgqpvssnqkpsikwhpqtvq
Low Complexity Region (SEG)
MllelylflmwlITLFQSQDVARDFGAACTPEFFLFKKDGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECVLSGQPVSSNQKPSIKWHPQTVQ
Disordered region (IsUnstruct)
**LELYLFLMWLITLFQSQDVARDFGAACTPEFFLFKKDGRRPFQLVYHGQFD*******LPVTGRDIRLAIECVL*********************
Disordered Region (DISOPRED)
*****YLFLMWLITLFQSQDVARDFGAACTPEFFLFKKDGRRPFQLVYHGQF**************DIRLAIECVLSGQPVSSNQKPS**WHP****
Disordered Region (DISEMBL)
MLLELYLFLMWLITLFQSQDVARDFGAACTPEFFLFKKDGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECVLSG*******************
Disordered Region (DISPRO)
MLLELYLFLMWLITLFQSQDVARDFGAACTPEFFLFKKDGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECVLSGQPVSSNQKPSIKWHP****
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MLLELYLFLMWLITLFQSQDVARDFGAACTPEFFLFKKDGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECVLSGQPVSSNQKPSIKWHPQTVQ
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	97
225457739	248	PREDICTED: uncharacterized protein LOC10	0.814	0.318	0.807	6e-33
302142779	246	unnamed protein product [Vitis vinifera]	0.814	0.321	0.807	7e-33
449443822	245	PREDICTED: uncharacterized protein LOC10	0.793	0.314	0.802	1e-31
449475598	245	PREDICTED: uncharacterized protein LOC10	0.793	0.314	0.802	1e-31
297850556	253	electron carrier/ oxidoreductase [Arabid	0.814	0.312	0.759	2e-31
224066737	150	predicted protein [Populus trichocarpa]	0.773	0.5	0.797	3e-31
356509312	252	PREDICTED: uncharacterized protein LOC10	0.804	0.309	0.780	8e-31
357463757	249	hypothetical protein MTR_3g090490 [Medic	0.793	0.309	0.804	1e-30
255645689	246	unknown [Glycine max]	0.793	0.313	0.790	2e-30
356515995	246	PREDICTED: uncharacterized protein LOC10	0.793	0.313	0.790	3e-30

>gi|225457739|ref|XP_002278020.1| PREDICTED: uncharacterized protein LOC100253998 [Vitis vinifera]

 Score =  144 bits (363), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 67/83 (80%), Positives = 74/83 (89%), Gaps = 4/83 (4%)

Query: 17  QSQDVARDFGAACTPEFFLFKKDGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECVL 76
           +SQDVARDFGA CTPEFFLFKKDGRRPF+LVYHGQFDDSRPSNN+ VTGRD+ LAI+CVL
Sbjct: 166 ESQDVARDFGAVCTPEFFLFKKDGRRPFELVYHGQFDDSRPSNNVRVTGRDLSLAIDCVL 225

Query: 77  SGQPVSSNQKP----SIKWHPQT 95
           SGQP+S  QKP    SIKWHP+T
Sbjct: 226 SGQPISLVQKPSVGCSIKWHPET 248

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|302142779|emb|CBI19982.3| unnamed protein product [Vitis vinifera]

 Score =  144 bits (363), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 67/83 (80%), Positives = 74/83 (89%), Gaps = 4/83 (4%)

Query: 17  QSQDVARDFGAACTPEFFLFKKDGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECVL 76
           +SQDVARDFGA CTPEFFLFKKDGRRPF+LVYHGQFDDSRPSNN+ VTGRD+ LAI+CVL
Sbjct: 164 ESQDVARDFGAVCTPEFFLFKKDGRRPFELVYHGQFDDSRPSNNVRVTGRDLSLAIDCVL 223

Query: 77  SGQPVSSNQKP----SIKWHPQT 95
           SGQP+S  QKP    SIKWHP+T
Sbjct: 224 SGQPISLVQKPSVGCSIKWHPET 246

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449443822|ref|XP_004139675.1| PREDICTED: uncharacterized protein LOC101213663 [Cucumis sativus]

 Score =  140 bits (353), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 65/81 (80%), Positives = 72/81 (88%), Gaps = 4/81 (4%)

Query: 17  QSQDVARDFGAACTPEFFLFKKDGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECVL 76
           +SQ+VARDF A CTPEFFLFKKDGRRPF+LVYHGQFDDSRPSNN P+TGRD+ LA++CVL
Sbjct: 165 ESQEVARDFSAVCTPEFFLFKKDGRRPFELVYHGQFDDSRPSNNKPITGRDLSLALDCVL 224

Query: 77  SGQPVSSNQKP----SIKWHP 93
           SGQPVSS QKP    SIKWHP
Sbjct: 225 SGQPVSSVQKPSVGCSIKWHP 245

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449475598|ref|XP_004154498.1| PREDICTED: uncharacterized protein LOC101229282 [Cucumis sativus]

 Score =  140 bits (352), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 65/81 (80%), Positives = 72/81 (88%), Gaps = 4/81 (4%)

Query: 17  QSQDVARDFGAACTPEFFLFKKDGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECVL 76
           +SQ+VARDF A CTPEFFLFKKDGRRPF+LVYHGQFDDSRPSNN P+TGRD+ LA++CVL
Sbjct: 165 ESQEVARDFSAVCTPEFFLFKKDGRRPFELVYHGQFDDSRPSNNKPITGRDLSLALDCVL 224

Query: 77  SGQPVSSNQKP----SIKWHP 93
           SGQPVSS QKP    SIKWHP
Sbjct: 225 SGQPVSSVQKPSVGCSIKWHP 245

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297850556|ref|XP_002893159.1| electron carrier/ oxidoreductase [Arabidopsis lyrata subsp. lyrata] gi|297339001|gb|EFH69418.1| electron carrier/ oxidoreductase [Arabidopsis lyrata subsp. lyrata]

 Score =  139 bits (351), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 63/83 (75%), Positives = 73/83 (87%), Gaps = 4/83 (4%)

Query: 17  QSQDVARDFGAACTPEFFLFKKDGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECVL 76
           +SQ+VAR+FGA CTPEFFL+KKDGRRPF+LVYHGQFDDSRPSNN+PVTGRD+ LAI+  L
Sbjct: 169 ESQEVAREFGAVCTPEFFLYKKDGRRPFELVYHGQFDDSRPSNNIPVTGRDLSLAIDLAL 228

Query: 77  SGQPVSSNQKP----SIKWHPQT 95
           S QP+ SNQKP    SIKWHP+T
Sbjct: 229 SCQPIPSNQKPSVGCSIKWHPET 251

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224066737|ref|XP_002302190.1| predicted protein [Populus trichocarpa] gi|222843916|gb|EEE81463.1| predicted protein [Populus trichocarpa]

 Score =  139 bits (349), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 63/79 (79%), Positives = 71/79 (89%), Gaps = 4/79 (5%)

Query: 19  QDVARDFGAACTPEFFLFKKDGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECVLSG 78
           Q+VARDFGA CTPEFFLFKKDGRRPF+LVYHGQ+DDSRPSNN+P+TGRD+ LAI+CVLSG
Sbjct: 69  QEVARDFGAVCTPEFFLFKKDGRRPFELVYHGQYDDSRPSNNVPITGRDLSLAIDCVLSG 128

Query: 79  QPVSSNQKPS----IKWHP 93
           QPVS  QKPS    +KWHP
Sbjct: 129 QPVSPVQKPSVGCGVKWHP 147

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356509312|ref|XP_003523394.1| PREDICTED: uncharacterized protein LOC100780633 [Glycine max]

 Score =  137 bits (345), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 64/82 (78%), Positives = 73/82 (89%), Gaps = 4/82 (4%)

Query: 17  QSQDVARDFGAACTPEFFLFKKDGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECVL 76
           +SQDVA+DFGA CTPEF+LFKKDGRRPF+LVYHGQFDDSRPSNN+P+TGRD+ LAI+ VL
Sbjct: 168 ESQDVAQDFGAVCTPEFYLFKKDGRRPFELVYHGQFDDSRPSNNVPLTGRDLSLAIDRVL 227

Query: 77  SGQPVSSNQKP----SIKWHPQ 94
           SGQPV S QKP    SIKWHP+
Sbjct: 228 SGQPVPSEQKPSVGCSIKWHPR 249

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357463757|ref|XP_003602160.1| hypothetical protein MTR_3g090490 [Medicago truncatula] gi|355491208|gb|AES72411.1| hypothetical protein MTR_3g090490 [Medicago truncatula] gi|388520089|gb|AFK48106.1| unknown [Medicago truncatula]

 Score =  137 bits (344), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 66/82 (80%), Positives = 72/82 (87%), Gaps = 5/82 (6%)

Query: 17  QSQDVARDFGAACTPEFFLFKKDGRRPFQLVYHGQFDDSRPS-NNLPVTGRDIRLAIECV 75
           +SQDVARDFGA CTPEF+LFKKDGRRPF+LVYHGQFDDSRPS NN+PVTGRD+ LAI+ V
Sbjct: 168 ESQDVARDFGAVCTPEFYLFKKDGRRPFELVYHGQFDDSRPSNNNIPVTGRDLSLAIDRV 227

Query: 76  LSGQPVSSNQKP----SIKWHP 93
           LSGQPV S QKP    SIKWHP
Sbjct: 228 LSGQPVPSEQKPSVGCSIKWHP 249

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255645689|gb|ACU23338.1| unknown [Glycine max]

 Score =  135 bits (341), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 64/81 (79%), Positives = 71/81 (87%), Gaps = 4/81 (4%)

Query: 17  QSQDVARDFGAACTPEFFLFKKDGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECVL 76
           +SQDVA+ FGA CTPEF+LFKKDGRRPF+LVYHGQFDDSRPSNN+PVTGRD+ LAI+ VL
Sbjct: 162 ESQDVAQHFGAVCTPEFYLFKKDGRRPFELVYHGQFDDSRPSNNVPVTGRDLSLAIDRVL 221

Query: 77  SGQPVSSNQKP----SIKWHP 93
           SGQPV S QKP    SIKWHP
Sbjct: 222 SGQPVPSEQKPSVGCSIKWHP 242

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356515995|ref|XP_003526682.1| PREDICTED: uncharacterized protein LOC100806693 [Glycine max]

 Score =  135 bits (341), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 64/81 (79%), Positives = 71/81 (87%), Gaps = 4/81 (4%)

Query: 17  QSQDVARDFGAACTPEFFLFKKDGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECVL 76
           +SQDVA+ FGA CTPEF+LFKKDGRRPF+LVYHGQFDDSRPSNN+PVTGRD+ LAI+ VL
Sbjct: 162 ESQDVAQHFGAVCTPEFYLFKKDGRRPFELVYHGQFDDSRPSNNVPVTGRDLSLAIDRVL 221

Query: 77  SGQPVSSNQKP----SIKWHP 93
           SGQPV S QKP    SIKWHP
Sbjct: 222 SGQPVPSEQKPSVGCSIKWHP 242

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	97
TAIR|locus:2027052	252	AT1G21350 [Arabidopsis thalian	0.814	0.313	0.746	2.3e-30
UNIPROTKB|Q83C53	185	CBU_1278 "Thiol-disulfide isom	0.752	0.394	0.426	9.1e-13
TIGR_CMR|CBU_1278	185	CBU_1278 "conserved hypothetic	0.752	0.394	0.426	9.1e-13
UNIPROTKB|Q2GII1	190	APH_1306 "Putative uncharacter	0.721	0.368	0.392	2.2e-09
TIGR_CMR|APH_1306	190	APH_1306 "conserved hypothetic	0.721	0.368	0.392	2.2e-09
UNIPROTKB|Q2GHV8	193	ECH_0147 "Putative uncharacter	0.762	0.383	0.373	4e-07
TIGR_CMR|ECH_0147	193	ECH_0147 "conserved hypothetic	0.762	0.383	0.373	4e-07
UNIPROTKB|Q606J6	185	MCA2020 "Putative uncharacteri	0.752	0.394	0.345	2.7e-05
UNIPROTKB|Q2GCP6	176	NSE_0884 "Putative uncharacter	0.649	0.357	0.363	6.7e-05
TIGR_CMR|NSE_0884	176	NSE_0884 "conserved hypothetic	0.649	0.357	0.363	6.7e-05

TAIR|locus:2027052 AT1G21350 [Arabidopsis thaliana (taxid:3702)]

 Score = 335 (123.0 bits), Expect = 2.3e-30, P = 2.3e-30
 Identities = 62/83 (74%), Positives = 72/83 (86%)

Query:    17 QSQDVARDFGAACTPEFFLFKKDGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECVL 76
             +SQ+VAR+FGA CTPEFFL+KKDGRRPF+LVYHGQFDDSRPS+N PVTGRD+ LAI+  L
Sbjct:   168 ESQEVAREFGAVCTPEFFLYKKDGRRPFELVYHGQFDDSRPSSNSPVTGRDLSLAIDLSL 227

Query:    77 SGQPVSSNQKPS----IKWHPQT 95
             S QP+ SNQKPS    IKWHP+T
Sbjct:   228 SCQPIPSNQKPSVGCSIKWHPET 250

GO:0005576 "extracellular region" evidence=ISM

GO:0005634 "nucleus" evidence=ISM

GO:0016209 "antioxidant activity" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0009507 "chloroplast" evidence=IDA

GO:0010027 "thylakoid membrane organization" evidence=RCA

UNIPROTKB|Q83C53 CBU_1278 "Thiol-disulfide isomerase and thioredoxin" [Coxiella burnetii RSA 493 (taxid:227377)]

 Score = 169 (64.5 bits), Expect = 9.1e-13, P = 9.1e-13
 Identities = 35/82 (42%), Positives = 53/82 (64%)

Query:    15 LF-QSQDVARDFGAACTPEFFLFKKDGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIE 73
             LF +SQ++A+ + A CTP+F++F K+       VY G+FD + P  + PVTG D+R A++
Sbjct:   106 LFDESQEIAKAYQAECTPDFYVFDKN----LACVYRGRFDSATPGRDTPVTGEDLRSALD 161

Query:    74 CVLSGQPVSSNQKPS----IKW 91
              +L+G  V  NQ+PS    IKW
Sbjct:   162 NILAGNLVDPNQQPSQGCNIKW 183

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TIGR_CMR|CBU_1278 CBU_1278 "conserved hypothetical protein" [Coxiella burnetii RSA 493 (taxid:227377)]

 Score = 169 (64.5 bits), Expect = 9.1e-13, P = 9.1e-13
 Identities = 35/82 (42%), Positives = 53/82 (64%)

Query:    15 LF-QSQDVARDFGAACTPEFFLFKKDGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIE 73
             LF +SQ++A+ + A CTP+F++F K+       VY G+FD + P  + PVTG D+R A++
Sbjct:   106 LFDESQEIAKAYQAECTPDFYVFDKN----LACVYRGRFDSATPGRDTPVTGEDLRSALD 161

Query:    74 CVLSGQPVSSNQKPS----IKW 91
              +L+G  V  NQ+PS    IKW
Sbjct:   162 NILAGNLVDPNQQPSQGCNIKW 183

GO:0008150 "biological_process" evidence=ND

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

UNIPROTKB|Q2GII1 APH_1306 "Putative uncharacterized protein" [Anaplasma phagocytophilum HZ (taxid:212042)]

 Score = 137 (53.3 bits), Expect = 2.2e-09, P = 2.2e-09
 Identities = 31/79 (39%), Positives = 45/79 (56%)

Query:    17 QSQDVARDFGAACTPEFFLFKKDGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECVL 76
             ++QDVAR +GA CTP+FF F +D     QL Y G+FDD +      +   ++  A++ + 
Sbjct:   109 ETQDVARSYGAVCTPDFFCFNRD----LQLCYRGRFDDQKAVEGA-LGASELYEAVKFIA 163

Query:    77 SGQPVSSNQKPSI----KW 91
             +   V  NQKPSI    KW
Sbjct:   164 TTGGVPENQKPSIGCSIKW 182

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TIGR_CMR|APH_1306 APH_1306 "conserved hypothetical protein" [Anaplasma phagocytophilum HZ (taxid:212042)]

 Score = 137 (53.3 bits), Expect = 2.2e-09, P = 2.2e-09
 Identities = 31/79 (39%), Positives = 45/79 (56%)

Query:    17 QSQDVARDFGAACTPEFFLFKKDGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECVL 76
             ++QDVAR +GA CTP+FF F +D     QL Y G+FDD +      +   ++  A++ + 
Sbjct:   109 ETQDVARSYGAVCTPDFFCFNRD----LQLCYRGRFDDQKAVEGA-LGASELYEAVKFIA 163

Query:    77 SGQPVSSNQKPSI----KW 91
             +   V  NQKPSI    KW
Sbjct:   164 TTGGVPENQKPSIGCSIKW 182

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|Q2GHV8 ECH_0147 "Putative uncharacterized protein" [Ehrlichia chaffeensis str. Arkansas (taxid:205920)]

 Score = 116 (45.9 bits), Expect = 4.0e-07, P = 4.0e-07
 Identities = 31/83 (37%), Positives = 43/83 (51%)

Query:    17 QSQDVARDFGAACTPEFFLFKKDGRRPFQLVYHGQFDDSRPSN-NLPVTGRDIRLAIECV 75
             ++Q VAR++GA CTP+FF F        +L Y G+FD S  +  N     RD+  A++ +
Sbjct:   109 ENQTVARNYGAVCTPDFFGFNNK----LELCYRGRFDASGKNQMNSKQEDRDLFNAMKLI 164

Query:    76 LSGQPVSSNQKPSI----KWHPQ 94
                     NQKPSI    KW  Q
Sbjct:   165 SKTGESPENQKPSIGCSIKWKSQ 187

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TIGR_CMR|ECH_0147 ECH_0147 "conserved hypothetical protein" [Ehrlichia chaffeensis str. Arkansas (taxid:205920)]

 Score = 116 (45.9 bits), Expect = 4.0e-07, P = 4.0e-07
 Identities = 31/83 (37%), Positives = 43/83 (51%)

Query:    17 QSQDVARDFGAACTPEFFLFKKDGRRPFQLVYHGQFDDSRPSN-NLPVTGRDIRLAIECV 75
             ++Q VAR++GA CTP+FF F        +L Y G+FD S  +  N     RD+  A++ +
Sbjct:   109 ENQTVARNYGAVCTPDFFGFNNK----LELCYRGRFDASGKNQMNSKQEDRDLFNAMKLI 164

Query:    76 LSGQPVSSNQKPSI----KWHPQ 94
                     NQKPSI    KW  Q
Sbjct:   165 SKTGESPENQKPSIGCSIKWKSQ 187

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|Q606J6 MCA2020 "Putative uncharacterized protein" [Methylococcus capsulatus str. Bath (taxid:243233)]

 Score = 100 (40.3 bits), Expect = 2.7e-05, P = 2.7e-05
 Identities = 28/81 (34%), Positives = 42/81 (51%)

Query:    15 LFQSQDVARDFGAACTPEFFLFKKDGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIEC 74
             L ++Q VAR +GA CTP+FF +  D     +L Y G+ D SR   + P   R++  A++ 
Sbjct:   106 LDETQAVARAYGAVCTPDFFGYNAD----LELQYRGRLDASRREASPPGCRRELYEAMKQ 161

Query:    75 VLSGQPVSSNQKPS----IKW 91
             +       + Q PS    IKW
Sbjct:   162 IAETGKGPAEQIPSMGCSIKW 182

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|Q2GCP6 NSE_0884 "Putative uncharacterized protein" [Neorickettsia sennetsu str. Miyayama (taxid:222891)]

 Score = 96 (38.9 bits), Expect = 6.7e-05, P = 6.7e-05
 Identities = 28/77 (36%), Positives = 39/77 (50%)

Query:    19 QDVARDFGAACTPEFFLFKKDGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECVLSG 78
             Q +A  +GA CTP+FF F ++     +L Y GQF D     +      D+  A+  +  G
Sbjct:   109 QRIAASYGAVCTPDFFGFDRN----LELQYRGQFIDLASGTH------DLLDAMLEIAGG 158

Query:    79 QPVSSNQKPSI----KW 91
             + VS  QKPSI    KW
Sbjct:   159 RKVSRKQKPSIGCSIKW 175

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TIGR_CMR|NSE_0884 NSE_0884 "conserved hypothetical protein" [Neorickettsia sennetsu str. Miyayama (taxid:222891)]

 Score = 96 (38.9 bits), Expect = 6.7e-05, P = 6.7e-05
 Identities = 28/77 (36%), Positives = 39/77 (50%)

Query:    19 QDVARDFGAACTPEFFLFKKDGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECVLSG 78
             Q +A  +GA CTP+FF F ++     +L Y GQF D     +      D+  A+  +  G
Sbjct:   109 QRIAASYGAVCTPDFFGFDRN----LELQYRGQFIDLASGTH------DLLDAMLEIAGG 158

Query:    79 QPVSSNQKPSI----KW 91
             + VS  QKPSI    KW
Sbjct:   159 RKVSRKQKPSIGCSIKW 175


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.323   0.138   0.431    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0       97        86   0.00091  102 3  11 22  0.43    29
                                                     29  0.47    30


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  10
  No. of states in DFA:  566 (60 KB)
  Total size of DFA:  112 KB (2074 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  9.74u 0.11s 9.85t   Elapsed:  00:00:00
  Total cpu time:  9.75u 0.11s 9.86t   Elapsed:  00:00:00
  Start:  Mon May 20 16:14:17 2013   End:  Mon May 20 16:14:17 2013

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	97
cd02969	171	cd02969, PRX_like1, Peroxiredoxin (PRX)-like 1 fam	2e-34

>gnl|CDD|239267 cd02969, PRX_like1, Peroxiredoxin (PRX)-like 1 family; hypothetical proteins that show sequence similarity to PRXs

 Score =  115 bits (291), Expect = 2e-34
 Identities = 43/78 (55%), Positives = 57/78 (73%), Gaps = 8/78 (10%)

Query: 18  SQDVARDFGAACTPEFFLFKKDGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECVLS 77
           +Q+VA+ +GAACTP+FFLF  DG+    LVY G+ DDSRP N+ PVTGRD+R A++ +L+
Sbjct: 98  TQEVAKAYGAACTPDFFLFDPDGK----LVYRGRIDDSRPGNDPPVTGRDLRAALDALLA 153

Query: 78  GQPVSSNQKPS----IKW 91
           G+PV   Q PS    IKW
Sbjct: 154 GKPVPVPQTPSIGCSIKW 171

Members of this group contain a conserved cysteine that aligns to the first cysteine in the CXXC motif of TRX. This does not correspond to the peroxidatic cysteine found in PRXs, which aligns to the second cysteine in the CXXC motif of TRX. In addition, these proteins do not contain the other two conserved residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. Length = 171

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	97
cd02969	171	PRX_like1 Peroxiredoxin (PRX)-like 1 family; hypot	99.48
PTZ00253	199	tryparedoxin peroxidase; Provisional	98.89
cd03016	203	PRX_1cys Peroxiredoxin (PRX) family, 1-cys PRX sub	98.53
PRK13190	202	putative peroxiredoxin; Provisional	98.48
cd03015	173	PRX_Typ2cys Peroxiredoxin (PRX) family, Typical 2-	98.46
cd03012	126	TlpA_like_DipZ_like TlpA-like family, DipZ-like su	98.45
PF08534	146	Redoxin: Redoxin; InterPro: IPR013740 This redoxin	98.41
PRK15412	185	thiol:disulfide interchange protein DsbE; Provisio	98.36
TIGR00385	173	dsbE periplasmic protein thiol:disulfide oxidoredu	98.3
cd03017	140	PRX_BCP Peroxiredoxin (PRX) family, Bacterioferrit	98.26
cd03010	127	TlpA_like_DsbE TlpA-like family, DsbE (also known	98.26
PF00578	124	AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Per	98.25
PRK15000	200	peroxidase; Provisional	98.22
PRK13599	215	putative peroxiredoxin; Provisional	98.2
TIGR01626	184	ytfJ_HI0045 conserved hypothetical protein YtfJ-fa	98.18
PRK03147	173	thiol-disulfide oxidoreductase; Provisional	98.14
cd03018	149	PRX_AhpE_like Peroxiredoxin (PRX) family, AhpE-lik	98.11
cd02967	114	mauD Methylamine utilization (mau) D family; mauD	98.1
TIGR03137	187	AhpC peroxiredoxin. This gene contains two invaria	98.07
PRK13189	222	peroxiredoxin; Provisional	98.03
TIGR02661	189	MauD methylamine dehydrogenase accessory protein M	97.99
cd03011	123	TlpA_like_ScsD_MtbDsbE TlpA-like family, suppresso	97.98
PRK09437	154	bcp thioredoxin-dependent thiol peroxidase; Review	97.96
PTZ00137	261	2-Cys peroxiredoxin; Provisional	97.95
cd02966	116	TlpA_like_family TlpA-like family; composed of Tlp	97.94
PRK10382	187	alkyl hydroperoxide reductase subunit C; Provision	97.9
cd02970	149	PRX_like2 Peroxiredoxin (PRX)-like 2 family; hypot	97.89
PRK13728	181	conjugal transfer protein TrbB; Provisional	97.89
cd02971	140	PRX_family Peroxiredoxin (PRX) family; composed of	97.87
PRK00522	167	tpx lipid hydroperoxide peroxidase; Provisional	97.84
PLN02412	167	probable glutathione peroxidase	97.83
PLN02399	236	phospholipid hydroperoxide glutathione peroxidase	97.7
PRK13191	215	putative peroxiredoxin; Provisional	97.59
TIGR02540	153	gpx7 putative glutathione peroxidase Gpx7. This mo	97.38
COG1225	157	Bcp Peroxiredoxin [Posttranslational modification,	97.32
PTZ00256	183	glutathione peroxidase; Provisional	97.27
cd00340	152	GSH_Peroxidase Glutathione (GSH) peroxidase family	97.26
TIGR02738	153	TrbB type-F conjugative transfer system pilin asse	97.19
cd02950	142	TxlA TRX-like protein A (TxlA) family; TxlA was or	97.17
cd02968	142	SCO SCO (an acronym for Synthesis of Cytochrome c	97.17
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	97.11
cd03014	143	PRX_Atyp2cys Peroxiredoxin (PRX) family, Atypical	97.07
PRK14018	521	trifunctional thioredoxin/methionine sulfoxide red	97.04
COG0450	194	AhpC Peroxiredoxin [Posttranslational modification	96.86
cd03009	131	TryX_like_TryX_NRX Tryparedoxin (TryX)-like family	96.79
PTZ00056	199	glutathione peroxidase; Provisional	96.65
cd02951	125	SoxW SoxW family; SoxW is a bacterial periplasmic	96.54
cd03008	146	TryX_like_RdCVF Tryparedoxin (TryX)-like family, R	96.45
PF13098	112	Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_	96.18
cd02975	113	PfPDO_like_N Pyrococcus furiosus protein disulfide	96.16
cd02964	132	TryX_like_family Tryparedoxin (TryX)-like family;	95.65
TIGR00411	82	redox_disulf_1 small redox-active disulfide protei	95.51
PF13905	95	Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_	95.5
TIGR01126	102	pdi_dom protein disulfide-isomerase domain. This m	95.28
cd03013	155	PRX5_like Peroxiredoxin (PRX) family, PRX5-like su	95.21
PF09695	160	YtfJ_HI0045: Bacterial protein of unknown function	95.15
PRK09381	109	trxA thioredoxin; Provisional	95.1
cd02953	104	DsbDgamma DsbD gamma family; DsbD gamma is the C-t	94.87
cd02973	67	TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-	94.73
TIGR02740	271	TraF-like TraF-like protein. This protein is relat	94.65
cd02956	96	ybbN ybbN protein family; ybbN is a hypothetical p	94.6
COG2143	182	Thioredoxin-related protein [Posttranslational mod	94.43
cd02963	111	TRX_DnaJ TRX domain, DnaJ domain containing protei	93.82
TIGR01068	101	thioredoxin thioredoxin. Several proteins, such as	93.73
cd03005	102	PDI_a_ERp46 PDIa family, endoplasmic reticulum pro	93.72
cd03065	120	PDI_b_Calsequestrin_N PDIb family, Calsequestrin s	93.61
PRK10996	139	thioredoxin 2; Provisional	92.9
cd02961	101	PDI_a_family Protein Disulfide Isomerase (PDIa) fa	92.83
cd03002	109	PDI_a_MPD1_like PDI family, MPD1-like subfamily; c	92.74
PF00085	103	Thioredoxin: Thioredoxin; InterPro: IPR013766 Thio	92.41
KOG0855	211	consensus Alkyl hydroperoxide reductase, thiol spe	92.29
cd02958	114	UAS UAS family; UAS is a domain of unknown functio	92.08
PLN00410	142	U5 snRNP protein, DIM1 family; Provisional	91.88
cd02949	97	TRX_NTR TRX domain, novel NADPH thioredoxin reduct	91.86
cd02994	101	PDI_a_TMX PDIa family, TMX subfamily; composed of	91.73
cd02999	100	PDI_a_ERp44_like PDIa family, endoplasmic reticulu	91.26
KOG0854	224	consensus Alkyl hydroperoxide reductase, thiol spe	90.91
cd03001	103	PDI_a_P5 PDIa family, P5 subfamily; composed of eu	90.87
PRK11509	132	hydrogenase-1 operon protein HyaE; Provisional	90.78
KOG0910	150	consensus Thioredoxin-like protein [Posttranslatio	90.74
PTZ00051	98	thioredoxin; Provisional	90.55
cd02985	103	TRX_CDSP32 TRX family, chloroplastic drought-induc	90.46
cd03004	104	PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfam	90.31
cd02948	102	TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fus	90.15
cd02998	105	PDI_a_ERp38 PDIa family, endoplasmic reticulum pro	89.84
cd03003	101	PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfam	89.57
cd03026	89	AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxid	89.05
TIGR02187	215	GlrX_arch Glutaredoxin-like domain protein. This f	89.01
cd03000	104	PDI_a_TMX3 PDIa family, TMX3 subfamily; composed o	88.84
cd02947	93	TRX_family TRX family; composed of two groups: Gro	88.74
PF00837	237	T4_deiodinase: Iodothyronine deiodinase; InterPro:	88.55
cd02997	104	PDI_a_PDIR PDIa family, PDIR subfamily; composed o	88.54
cd02962	152	TMX2 TMX2 family; composed of proteins similar to	88.47
COG3054	184	Predicted transcriptional regulator [General funct	87.99
PF13728	215	TraF: F plasmid transfer operon protein	87.54
cd02984	97	TRX_PICOT TRX domain, PICOT (for PKC-interacting c	86.82
cd02957	113	Phd_like Phosducin (Phd)-like family; composed of	85.67
cd02954	114	DIM1 Dim1 family; Dim1 is also referred to as U5 s	84.91
PRK00293	571	dipZ thiol:disulfide interchange protein precursor	84.28
cd02995	104	PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain	83.92
cd02996	108	PDI_a_ERp44 PDIa family, endoplasmic reticulum pro	83.66
KOG0852	196	consensus Alkyl hydroperoxide reductase, thiol spe	82.35
cd02965	111	HyaE HyaE family; HyaE is also called HupG and Hox	82.21
KOG0907	106	consensus Thioredoxin [Posttranslational modificat	81.5
PF13192	76	Thioredoxin_3: Thioredoxin domain; PDB: 1ZYP_B 1ZY	80.42
PRK11657	251	dsbG disulfide isomerase/thiol-disulfide oxidase;	80.05

>cd02969 PRX_like1 Peroxiredoxin (PRX)-like 1 family; hypothetical proteins that show sequence similarity to PRXs

Probab=99.48  E-value=1.9e-13  Score=95.99  Aligned_cols=81  Identities=54%  Similarity=0.988  Sum_probs=72.5

Q ss_pred             hhcceeEEEeChhhHHHHhCCccCceEEEEecCCCCCeeEEEeeecCCCCCCCCCCCcHHHHHHHHHHHHcCCCCCCCCC
Q 034345            7 LFLMWLITLFQSQDVARDFGAACTPEFFLFKKDGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECVLSGQPVSSNQK   86 (97)
Q Consensus         7 ~~~~fpvL~D~~q~va~a~gA~~TPe~fvld~~g~~~~~l~Y~G~IDd~~~~~~~~~t~~~L~~Ai~alLaG~~v~~~~t   86 (97)
                      ..++||++.|+++.+++.||...+|..||+|++|    +++|+|.+++.........+...+.+||+++|+|+..+.++|
T Consensus        87 ~~~~~~~l~D~~~~~~~~~~v~~~P~~~lid~~G----~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~  162 (171)
T cd02969          87 HGYPFPYLLDETQEVAKAYGAACTPDFFLFDPDG----KLVYRGRIDDSRPGNDPPVTGRDLRAALDALLAGKPVPVPQT  162 (171)
T ss_pred             CCCCceEEECCchHHHHHcCCCcCCcEEEECCCC----eEEEeecccCCcccccccccHHHHHHHHHHHHcCCCCCcccc
Confidence            4678999999999999999999999999999999    799999999875332346678899999999999999999999


Q ss_pred             Cc----eee
Q 034345           87 PS----IKW   91 (97)
Q Consensus        87 ~~----IKw   91 (97)
                      ++    ++|
T Consensus       163 ~~~~~~~~~  171 (171)
T cd02969         163 PSIGCSIKW  171 (171)
T ss_pred             CCCCcccCC
Confidence            98    877

Members of this group contain a conserved cysteine that aligns to the first cysteine in the CXXC motif of TRX. This does not correspond to the peroxidatic cysteine found in PRXs, which aligns to the second cysteine in the CXXC motif of TRX. In addition, these proteins do not contain the other two conserved residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF.

>PTZ00253 tryparedoxin peroxidase; Provisional

Probab=98.89  E-value=2.7e-09  Score=77.45  Aligned_cols=76  Identities=16%  Similarity=0.260  Sum_probs=57.4

Q ss_pred             hcceeEEEeChhhHHHHhCCc------cCceEEEEecCCCCCeeEEEeeecCCCCCCCCCCCcHHHHHHHHHHHHcCCCC
Q 034345            8 FLMWLITLFQSQDVARDFGAA------CTPEFFLFKKDGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECVLSGQPV   81 (97)
Q Consensus         8 ~~~fpvL~D~~q~va~a~gA~------~TPe~fvld~~g~~~~~l~Y~G~IDd~~~~~~~~~t~~~L~~Ai~alLaG~~v   81 (97)
                      .++||++.|++++++++||+.      ..|..||||++|    +|+|.-. .+..       ..++++++|+.|.+.+.+
T Consensus        99 ~~~fpll~D~~~~ia~~ygv~~~~~g~~~r~~fiID~~G----~i~~~~~-~~~~-------~~r~~~e~l~~l~a~~~~  166 (199)
T PTZ00253         99 TMAIPMLADKTKSIARSYGVLEEEQGVAYRGLFIIDPKG----MLRQITV-NDMP-------VGRNVEEVLRLLEAFQFV  166 (199)
T ss_pred             ccccceEECcHhHHHHHcCCcccCCCceEEEEEEECCCC----EEEEEEe-cCCC-------CCCCHHHHHHHHHhhhhH
Confidence            489999999999999999985      458999999999    6776422 2221       123688999999999887


Q ss_pred             CCCCC-CceeecCCC
Q 034345           82 SSNQK-PSIKWHPQT   95 (97)
Q Consensus        82 ~~~~t-~~IKw~~~~   95 (97)
                      ..+.. -+|||++|+
T Consensus       167 ~~~~~~cp~~w~~g~  181 (199)
T PTZ00253        167 EKHGEVCPANWKKGD  181 (199)
T ss_pred             HhcCCEeCCCCCcCC
Confidence            76311 129999876

>cd03016 PRX_1cys Peroxiredoxin (PRX) family, 1-cys PRX subfamily; composed of PRXs containing only one conserved cysteine, which serves as the peroxidatic cysteine

Probab=98.53  E-value=4e-07  Score=66.42  Aligned_cols=78  Identities=12%  Similarity=0.169  Sum_probs=52.9

Q ss_pred             hhcceeEEEeChhhHHHHhCCcc--------CceEEEEecCCCCCeeEEEeeecCCCCCCCCCCCcHHHHHHHHHHHHcC
Q 034345            7 LFLMWLITLFQSQDVARDFGAAC--------TPEFFLFKKDGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECVLSG   78 (97)
Q Consensus         7 ~~~~fpvL~D~~q~va~a~gA~~--------TPe~fvld~~g~~~~~l~Y~G~IDd~~~~~~~~~t~~~L~~Ai~alLaG   78 (97)
                      ..++||++.|++++++++||...        .|.+||||++|    +|+|.-..+...     .....++.++|+++-..
T Consensus        86 ~~~~fpil~D~~~~ia~~yg~~~~~~~~~~~~r~~fiID~~G----~I~~~~~~~~~~-----gr~~~ell~~l~~lq~~  156 (203)
T cd03016          86 VEIPFPIIADPDREVAKLLGMIDPDAGSTLTVRAVFIIDPDK----KIRLILYYPATT-----GRNFDEILRVVDALQLT  156 (203)
T ss_pred             CCCceeEEECchHHHHHHcCCccccCCCCceeeEEEEECCCC----eEEEEEecCCCC-----CCCHHHHHHHHHHHhhH
Confidence            47899999999999999999752        35699999999    566553322221     11355788888887665


Q ss_pred             CCCCCCCCCceeecCCC
Q 034345           79 QPVSSNQKPSIKWHPQT   95 (97)
Q Consensus        79 ~~v~~~~t~~IKw~~~~   95 (97)
                      ..-.+. | +..|++|+
T Consensus       157 ~~~~~~-~-p~~w~~g~  171 (203)
T cd03016         157 DKHKVA-T-PANWKPGD  171 (203)
T ss_pred             hhcCcC-c-CCCCCCCC
Confidence            433222 2 36777664

They are homodimeric thiol-specific antioxidant (TSA) proteins that confer a protective role in cells by reducing and detoxifying hydrogen peroxide, peroxynitrite, and organic hydroperoxides. As with all other PRXs, a cysteine sulfenic acid intermediate is formed upon reaction of 1-cys PRX with its substrates. Having no resolving cysteine, the oxidized enzyme is resolved by an external small-molecule or protein reductant such as thioredoxin or glutaredoxin. Similar to typical 2-cys PRX, 1-cys PRX forms a functional dimeric unit with a B-type interface, as well as a decameric structure which is stabilized in the reduced form of the enzyme. Other oligomeric forms, tetramers and hexamers, have also been reported. Mammalian 1-cys PRX is localized cellularly in the cytosol and is expressed at high levels in brain, eye, testes an

>PRK13190 putative peroxiredoxin; Provisional

Probab=98.48  E-value=6.3e-07  Score=65.53  Aligned_cols=76  Identities=8%  Similarity=0.152  Sum_probs=54.6

Q ss_pred             cceeEEEeChhhHHHHhCCc------cCceEEEEecCCCCCeeEEEeeecCCCCCCCCCCCcHHHHHHHHHHHHcCCCCC
Q 034345            9 LMWLITLFQSQDVARDFGAA------CTPEFFLFKKDGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECVLSGQPVS   82 (97)
Q Consensus         9 ~~fpvL~D~~q~va~a~gA~------~TPe~fvld~~g~~~~~l~Y~G~IDd~~~~~~~~~t~~~L~~Ai~alLaG~~v~   82 (97)
                      ++||++.|++++++++||..      ..|.+||||++|    +++|.-.-+...     .....++-++|+++....+-.
T Consensus        90 ~~fPll~D~~~~ia~~ygv~~~~~g~~~p~~fiId~~G----~I~~~~~~~~~~-----gr~~~ellr~l~~l~~~~~~~  160 (202)
T PRK13190         90 IPFPVIADIDKELAREYNLIDENSGATVRGVFIIDPNQ----IVRWMIYYPAET-----GRNIDEIIRITKALQVNWKRK  160 (202)
T ss_pred             ceEEEEECCChHHHHHcCCccccCCcEEeEEEEECCCC----EEEEEEEeCCCC-----CCCHHHHHHHHHHhhhHHhcC
Confidence            68999999999999999985      589999999999    788876433321     224667888888887643221


Q ss_pred             CCCCCceeecCCC
Q 034345           83 SNQKPSIKWHPQT   95 (97)
Q Consensus        83 ~~~t~~IKw~~~~   95 (97)
                        .--|..|++|+
T Consensus       161 --~~~p~~w~~g~  171 (202)
T PRK13190        161 --VATPANWQPGQ  171 (202)
T ss_pred             --CCcCCCCCcCC
Confidence              11125676654

>cd03015 PRX_Typ2cys Peroxiredoxin (PRX) family, Typical 2-Cys PRX subfamily; PRXs are thiol-specific antioxidant (TSA) proteins, which confer a protective role in cells through its peroxidase activity by reducing hydrogen peroxide, peroxynitrite, and organic hydroperoxides

Probab=98.46  E-value=1e-06  Score=62.16  Aligned_cols=40  Identities=13%  Similarity=0.233  Sum_probs=35.2

Q ss_pred             hcceeEEEeChhhHHHHhCCc------cCceEEEEecCCCCCeeEEEeee
Q 034345            8 FLMWLITLFQSQDVARDFGAA------CTPEFFLFKKDGRRPFQLVYHGQ   51 (97)
Q Consensus         8 ~~~fpvL~D~~q~va~a~gA~------~TPe~fvld~~g~~~~~l~Y~G~   51 (97)
                      .++||++.|++++++++||+.      ..|+.||||++|    +++|+..
T Consensus        92 ~~~f~~l~D~~~~~~~~~gv~~~~~~~~~p~~~lID~~G----~I~~~~~  137 (173)
T cd03015          92 KINFPLLADPKKKISRDYGVLDEEEGVALRGTFIIDPEG----IIRHITV  137 (173)
T ss_pred             CcceeEEECCchhHHHHhCCccccCCceeeEEEEECCCC----eEEEEEe
Confidence            489999999999999999986      568999999999    6777764

The functional unit of typical 2-cys PRX is a homodimer. A unique intermolecular redox-active disulfide center is utilized for its activity. Upon reaction with peroxides, its peroxidatic cysteine is oxidized into a sulfenic acid intermediate which is resolved by bonding with the resolving cysteine from the other subunit of the homodimer. This intermolecular disulfide bond is then reduced by thioredoxin, tryparedoxin or AhpF. Typical 2-cys PRXs, like 1-cys PRXs, form decamers which are stabilized by reduction of the active site cysteine. Typical 2-cys PRX interacts through beta strands at one edge of the monomer (B-type interface) to form the functional homodimer, and uses an A-type interface (similar to the dimeric

>cd03012 TlpA_like_DipZ_like TlpA-like family, DipZ-like subfamily; composed uncharacterized proteins containing a TlpA-like TRX domain

Probab=98.45  E-value=2.4e-07  Score=61.98  Aligned_cols=38  Identities=13%  Similarity=0.218  Sum_probs=34.6

Q ss_pred             hcceeEEEeChhhHHHHhCCccCceEEEEecCCCCCeeEEEe
Q 034345            8 FLMWLITLFQSQDVARDFGAACTPEFFLFKKDGRRPFQLVYH   49 (97)
Q Consensus         8 ~~~fpvL~D~~q~va~a~gA~~TPe~fvld~~g~~~~~l~Y~   49 (97)
                      .++||++.|+++.++++||+..+|+.||||++|    +++|+
T Consensus        84 ~~~~p~~~D~~~~~~~~~~v~~~P~~~vid~~G----~v~~~  121 (126)
T cd03012          84 GITYPVANDNDYATWRAYGNQYWPALYLIDPTG----NVRHV  121 (126)
T ss_pred             CCCCCEEECCchHHHHHhCCCcCCeEEEECCCC----cEEEE
Confidence            578999999999999999999999999999999    46554

Some members show domain architectures similar to that of E. coli DipZ protein (also known as DsbD). The only eukaryotic members of the TlpA family belong to this subfamily. TlpA is a disulfide reductase known to have a crucial role in the biogenesis of cytochrome aa3.

>PF08534 Redoxin: Redoxin; InterPro: IPR013740 This redoxin domain is found in peroxiredoxin, thioredoxin and glutaredoxin proteins

Probab=98.41  E-value=8.8e-07  Score=60.00  Aligned_cols=45  Identities=24%  Similarity=0.356  Sum_probs=39.4

Q ss_pred             hhcceeEEEeChhhHHHHhCCc---------cCceEEEEecCCCCCeeEEEeeecCCC
Q 034345            7 LFLMWLITLFQSQDVARDFGAA---------CTPEFFLFKKDGRRPFQLVYHGQFDDS   55 (97)
Q Consensus         7 ~~~~fpvL~D~~q~va~a~gA~---------~TPe~fvld~~g~~~~~l~Y~G~IDd~   55 (97)
                      ..++||++.|++++++++||+.         .+|+.||||++|    +++|++.-.+.
T Consensus        83 ~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~P~~~lId~~G----~V~~~~~g~~~  136 (146)
T PF08534_consen   83 YGINFPVLSDPDGALAKALGVTIMEDPGNGFGIPTTFLIDKDG----KVVYRHVGPDP  136 (146)
T ss_dssp             TTTTSEEEEETTSHHHHHTTCEEECCTTTTSSSSEEEEEETTS----BEEEEEESSBT
T ss_pred             hCCCceEEechHHHHHHHhCCccccccccCCeecEEEEEECCC----EEEEEEeCCCC
Confidence            4578999999999999999999         999999999999    68888764433

Peroxiredoxins (Prxs) constitute a family of thiol peroxidases that reduce hydrogen peroxide, peroxinitrite, and hydroperoxides using a strictly conserved cysteine []. Chloroplast thioredoxin systems in plants regulate the enzymes involved in photosynthetic carbon assimilation []. It is thought that redoxins have a large role to play in anti-oxidant defence. Cadmium-sensitive proteins are also regulated via thioredoxin and glutaredoxin thiol redox systems [].; GO: 0016491 oxidoreductase activity; PDB: 2H30_A 1TP9_A 1Y25_A 1XVQ_A 2B1K_A 2G0F_A 2B1L_B 3K8N_A 1Z5Y_E 3OR5_A ....

>PRK15412 thiol:disulfide interchange protein DsbE; Provisional

Probab=98.36  E-value=7.3e-07  Score=63.94  Aligned_cols=58  Identities=19%  Similarity=0.131  Sum_probs=43.7

Q ss_pred             hccee-EEEeChhhHHHHhCCccCceEEEEecCCCCCeeEEEeeecCCCCCCCCCCCcHHHHHHHHHHHHcC
Q 034345            8 FLMWL-ITLFQSQDVARDFGAACTPEFFLFKKDGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECVLSG   78 (97)
Q Consensus         8 ~~~fp-vL~D~~q~va~a~gA~~TPe~fvld~~g~~~~~l~Y~G~IDd~~~~~~~~~t~~~L~~Ai~alLaG   78 (97)
                      .++|| ++.|+++.++++||...+|+.||||++|    +++|+-.-+.+         ...++..|+.+++.
T Consensus       120 ~~~~~~~~~D~~~~~~~~~gv~~~P~t~vid~~G----~i~~~~~G~~~---------~~~l~~~i~~~~~~  178 (185)
T PRK15412        120 GNPYALSLFDGDGMLGLDLGVYGAPETFLIDGNG----IIRYRHAGDLN---------PRVWESEIKPLWEK  178 (185)
T ss_pred             CCCCceEEEcCCccHHHhcCCCcCCeEEEECCCc----eEEEEEecCCC---------HHHHHHHHHHHHHH
Confidence            46788 5889999999999999999999999999    45555432222         33677777777654

>TIGR00385 dsbE periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily

Probab=98.30  E-value=1.2e-06  Score=61.96  Aligned_cols=55  Identities=18%  Similarity=0.275  Sum_probs=43.2

Q ss_pred             hccee-EEEeChhhHHHHhCCccCceEEEEecCCCCCeeEEEe--eecCCCCCCCCCCCcHHHHHHHHHHHHc
Q 034345            8 FLMWL-ITLFQSQDVARDFGAACTPEFFLFKKDGRRPFQLVYH--GQFDDSRPSNNLPVTGRDIRLAIECVLS   77 (97)
Q Consensus         8 ~~~fp-vL~D~~q~va~a~gA~~TPe~fvld~~g~~~~~l~Y~--G~IDd~~~~~~~~~t~~~L~~Ai~alLa   77 (97)
                      .++|| ++.|+.++++++||+..+|+.|+||++|    +++|+  |.++           ...|++-|+++++
T Consensus       115 ~~~f~~v~~D~~~~~~~~~~v~~~P~~~~id~~G----~i~~~~~G~~~-----------~~~l~~~l~~~~~  172 (173)
T TIGR00385       115 GNPYQAILIDPNGKLGLDLGVYGAPETFLVDGNG----VILYRHAGPLN-----------NEVWTEGFLPAME  172 (173)
T ss_pred             CCCCceEEECCCCchHHhcCCeeCCeEEEEcCCc----eEEEEEeccCC-----------HHHHHHHHHHHhh
Confidence            35787 6789999999999999999999999999    56655  5443           3367777777663

Involved in the biogenesis of c-type cytochromes as well as in disulfide bond formation in some periplasmic proteins.

>cd03017 PRX_BCP Peroxiredoxin (PRX) family, Bacterioferritin comigratory protein (BCP) subfamily; composed of thioredoxin-dependent thiol peroxidases, widely expressed in pathogenic bacteria, that protect cells against toxicity from reactive oxygen species by reducing and detoxifying hydroperoxides

Probab=98.26  E-value=1.7e-06  Score=57.87  Aligned_cols=46  Identities=17%  Similarity=0.204  Sum_probs=39.8

Q ss_pred             hcceeEEEeChhhHHHHhCCccC---------ceEEEEecCCCCCeeEEEeeecCCC
Q 034345            8 FLMWLITLFQSQDVARDFGAACT---------PEFFLFKKDGRRPFQLVYHGQFDDS   55 (97)
Q Consensus         8 ~~~fpvL~D~~q~va~a~gA~~T---------Pe~fvld~~g~~~~~l~Y~G~IDd~   55 (97)
                      .++||++.|+++.++++||+..+         |++||||++|+  ++-.|.|..+..
T Consensus        79 ~~~~~~l~D~~~~~~~~~gv~~~~~~~~~~~~p~~~lid~~G~--v~~~~~g~~~~~  133 (140)
T cd03017          79 GLPFPLLSDPDGKLAKAYGVWGEKKKKYMGIERSTFLIDPDGK--IVKVWRKVKPKG  133 (140)
T ss_pred             CCCceEEECCccHHHHHhCCccccccccCCcceeEEEECCCCE--EEEEEecCCccc
Confidence            57899999999999999999988         99999999996  677777776443

The protein was named BCP based on its electrophoretic mobility before its function was known. BCP shows substrate selectivity toward fatty acid hydroperoxides rather than hydrogen peroxide or alkyl hydroperoxides. BCP contains the peroxidatic cysteine but appears not to possess a resolving cysteine (some sequences, not all, contain a second cysteine but its role is still unknown). Unlike other PRXs, BCP exists as a monomer. The plant homolog of BCP is PRX Q, which is expressed only in leaves and is cellularly localized in the chloroplasts and the guard cells of stomata. Also included in this subfamily is the fungal nuclear protein, Dot5p (for disrupter of telomere silencing protein 5), w

>cd03010 TlpA_like_DsbE TlpA-like family, DsbE (also known as CcmG and CycY) subfamily; DsbE is a membrane-anchored, periplasmic TRX-like reductase containing a CXXC motif that specifically donates reducing equivalents to apocytochrome c via CcmH, another cytochrome c maturation (Ccm) factor with a redox active CXXC motif

Probab=98.26  E-value=1.5e-06  Score=57.77  Aligned_cols=45  Identities=22%  Similarity=0.301  Sum_probs=37.5

Q ss_pred             ccee-EEEeChhhHHHHhCCccCceEEEEecCCCCCeeEEEeeecCCC
Q 034345            9 LMWL-ITLFQSQDVARDFGAACTPEFFLFKKDGRRPFQLVYHGQFDDS   55 (97)
Q Consensus         9 ~~fp-vL~D~~q~va~a~gA~~TPe~fvld~~g~~~~~l~Y~G~IDd~   55 (97)
                      ++|| ++.|+.+.++++||...+|+.|+||++|+  ++-+|.|.+|..
T Consensus        79 ~~~~~~~~D~~~~~~~~~~v~~~P~~~~ld~~G~--v~~~~~G~~~~~  124 (127)
T cd03010          79 NPYAAVGFDPDGRVGIDLGVYGVPETFLIDGDGI--IRYKHVGPLTPE  124 (127)
T ss_pred             CCCceEEECCcchHHHhcCCCCCCeEEEECCCce--EEEEEeccCChH
Confidence            4565 67899999999999999999999999995  455677988754

Assembly of cytochrome c requires the ligation of heme to reduced thiols of the apocytochrome. In bacteria, this assembly occurs in the periplasm. The reductase activity of DsbE in the oxidizing environment of the periplasm is crucial in the maturation of cytochrome c.

>PF00578 AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Peroxiredoxins (Prxs) are a ubiquitous family of antioxidant enzymes that also control cytokine-induced peroxide levels which mediate signal transduction in mammalian cells

Probab=98.25  E-value=1.9e-06  Score=56.30  Aligned_cols=38  Identities=26%  Similarity=0.472  Sum_probs=35.8

Q ss_pred             hcceeEEEeChhhHHHHhCCc------cCceEEEEecCCCCCeeEEEe
Q 034345            8 FLMWLITLFQSQDVARDFGAA------CTPEFFLFKKDGRRPFQLVYH   49 (97)
Q Consensus         8 ~~~fpvL~D~~q~va~a~gA~------~TPe~fvld~~g~~~~~l~Y~   49 (97)
                      .++||++.|.+++++++||+.      .+|.+||||++|    +|+|+
T Consensus        81 ~~~~~~~~D~~~~~~~~~~~~~~~~~~~~p~~~lid~~g----~I~~~  124 (124)
T PF00578_consen   81 GLPFPVLSDPDGELAKAFGIEDEKDTLALPAVFLIDPDG----KIRYA  124 (124)
T ss_dssp             TCSSEEEEETTSHHHHHTTCEETTTSEESEEEEEEETTS----BEEEE
T ss_pred             ccccccccCcchHHHHHcCCccccCCceEeEEEEECCCC----EEEeC
Confidence            479999999999999999999      999999999999    79985

Prxs can be regulated by changes to phosphorylation, redox and possibly oligomerisation states. Prxs are divided into three classes: typical 2-Cys Prxs; atypical 2-Cys Prxs; and 1-Cys Prxs. All Prxs share the same basic catalytic mechanism, in which an active-site cysteine (the peroxidatic cysteine) is oxidised to a sulphenic acid by the peroxide substrate. The recycling of the sulphenic acid back to a thiol is what distinguishes the three enzyme classes. Using crystal structures, a detailed catalytic cycle has been derived for typical 2-Cys Prxs, including a model for the redox-regulated oligomeric state proposed to control enzyme activity []. Alkyl hydroperoxide reductase (AhpC) is responsible for directly reducing organic hyperoxides in its reduced dithiol form. Thiol specific antioxidant (TSA) is a physiologically important antioxidant which constitutes an enzymatic defence against sulphur-containing radicals. This family contains AhpC and TSA, as well as related proteins.; GO: 0016209 antioxidant activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QMV_A 1PRX_B 3HJP_C 3HA9_A 2V41_G 2V32_C 2V2G_C 3LWA_A 3IA1_B 1ZYE_G ....

>PRK15000 peroxidase; Provisional

Probab=98.22  E-value=4.8e-06  Score=61.04  Aligned_cols=77  Identities=8%  Similarity=0.103  Sum_probs=50.5

Q ss_pred             hcceeEEEeChhhHHHHhCCc------cCceEEEEecCCCCCeeEEEeeecCCCCCCCCCCCcHHHHHHHHHHHHcCCCC
Q 034345            8 FLMWLITLFQSQDVARDFGAA------CTPEFFLFKKDGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECVLSGQPV   81 (97)
Q Consensus         8 ~~~fpvL~D~~q~va~a~gA~------~TPe~fvld~~g~~~~~l~Y~G~IDd~~~~~~~~~t~~~L~~Ai~alLaG~~v   81 (97)
                      .++||++.|++++++++||..      ..|..||||++|    +|+|.-.-+...     .....++-++|+++--.++=
T Consensus        97 ~i~fpllsD~~~~ia~~ygv~~~~~g~~~r~tfiID~~G----~I~~~~~~~~~~-----gr~~~eilr~l~al~~~~~~  167 (200)
T PRK15000         97 PVKYAMVADVKREIQKAYGIEHPDEGVALRGSFLIDANG----IVRHQVVNDLPL-----GRNIDEMLRMVDALQFHEEH  167 (200)
T ss_pred             ccCceEEECCCcHHHHHcCCccCCCCcEEeEEEEECCCC----EEEEEEecCCCC-----CCCHHHHHHHHHHhhhHHhc
Confidence            469999999999999999987      689999999999    566653312221     11345666667665542211


Q ss_pred             CCCCCCceeecCCC
Q 034345           82 SSNQKPSIKWHPQT   95 (97)
Q Consensus        82 ~~~~t~~IKw~~~~   95 (97)
                        .+.-|..|++|+
T Consensus       168 --~~~~p~~w~~g~  179 (200)
T PRK15000        168 --GDVCPAQWEKGK  179 (200)
T ss_pred             --CCCcCCCCCCCC
Confidence              111236676664

>PRK13599 putative peroxiredoxin; Provisional

Probab=98.20  E-value=8.4e-06  Score=60.55  Aligned_cols=75  Identities=11%  Similarity=0.158  Sum_probs=51.9

Q ss_pred             hcceeEEEeChhhHHHHhCCc-------cCceEEEEecCCCCCeeEEEeeecCCCCCCCCCCCcHHHHHHHHHHHHcCCC
Q 034345            8 FLMWLITLFQSQDVARDFGAA-------CTPEFFLFKKDGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECVLSGQP   80 (97)
Q Consensus         8 ~~~fpvL~D~~q~va~a~gA~-------~TPe~fvld~~g~~~~~l~Y~G~IDd~~~~~~~~~t~~~L~~Ai~alLaG~~   80 (97)
                      .++||++.|++++++++||..       ..|.+||||++|    ++++...-....     .....++-++|++|-....
T Consensus        90 ~i~fPil~D~~~~va~~yg~~~~~~~~~~~R~tfIID~dG----~Ir~~~~~p~~~-----gr~~~eilr~l~~lq~~~~  160 (215)
T PRK13599         90 AIPFPVIADDLGKVSNQLGMIHPGKGTNTVRAVFIVDDKG----TIRLIMYYPQEV-----GRNVDEILRALKALQTADQ  160 (215)
T ss_pred             CCceeEEECCCchHHHHcCCCccCCCCceeeEEEEECCCC----EEEEEEEcCCCC-----CCCHHHHHHHHHHhhhhhh
Confidence            589999999999999999973       579999999999    788886433221     1134567777877644332


Q ss_pred             CCCCCCCceeecC
Q 034345           81 VSSNQKPSIKWHP   93 (97)
Q Consensus        81 v~~~~t~~IKw~~   93 (97)
                      -.+.  -+..|.+
T Consensus       161 ~~~~--~p~~w~~  171 (215)
T PRK13599        161 YGVA--LPEKWPN  171 (215)
T ss_pred             cCCC--cCCCCCC
Confidence            2111  1367766

>TIGR01626 ytfJ_HI0045 conserved hypothetical protein YtfJ-family, TIGR01626

Probab=98.18  E-value=3.7e-06  Score=61.70  Aligned_cols=46  Identities=17%  Similarity=0.213  Sum_probs=40.0

Q ss_pred             hccee---EEEeChhhHHHHhCCccCceE-EEEecCCCCCeeEEEeeecCCC
Q 034345            8 FLMWL---ITLFQSQDVARDFGAACTPEF-FLFKKDGRRPFQLVYHGQFDDS   55 (97)
Q Consensus         8 ~~~fp---vL~D~~q~va~a~gA~~TPe~-fvld~~g~~~~~l~Y~G~IDd~   55 (97)
                      ...||   +++|+++.++.+||....|+. ||||++|+  ++-++.|.++..
T Consensus       121 ~~~~P~~~vllD~~g~v~~~~gv~~~P~T~fVIDk~Gk--Vv~~~~G~l~~e  170 (184)
T TIGR01626       121 KKENPWSQVVLDDKGAVKNAWQLNSEDSAIIVLDKTGK--VKFVKEGALSDS  170 (184)
T ss_pred             cccCCcceEEECCcchHHHhcCCCCCCceEEEECCCCc--EEEEEeCCCCHH
Confidence            55777   999999999999999999999 99999996  677788877554

This model represents sequences from gamma proteobacteria that are related to the E. coli protein, YtfJ.

>PRK03147 thiol-disulfide oxidoreductase; Provisional

Probab=98.14  E-value=5.5e-06  Score=57.29  Aligned_cols=43  Identities=26%  Similarity=0.462  Sum_probs=36.2

Q ss_pred             hcceeEEEeChhhHHHHhCCccCceEEEEecCCCCCeeEEEeeec
Q 034345            8 FLMWLITLFQSQDVARDFGAACTPEFFLFKKDGRRPFQLVYHGQF   52 (97)
Q Consensus         8 ~~~fpvL~D~~q~va~a~gA~~TPe~fvld~~g~~~~~l~Y~G~I   52 (97)
                      .++||++.|++++++++||...+|+.||+|++|+  +.-.|.|..
T Consensus       117 ~~~~~~~~d~~~~~~~~~~v~~~P~~~lid~~g~--i~~~~~g~~  159 (173)
T PRK03147        117 GLTFPVAIDKGRQVIDAYGVGPLPTTFLIDKDGK--VVKVITGEM  159 (173)
T ss_pred             CCCceEEECCcchHHHHcCCCCcCeEEEECCCCc--EEEEEeCCC
Confidence            5689999999999999999999999999999994  333455644

>cd03018 PRX_AhpE_like Peroxiredoxin (PRX) family, AhpE-like subfamily; composed of proteins similar to Mycobacterium tuberculosis AhpE

Probab=98.11  E-value=7.1e-06  Score=55.46  Aligned_cols=45  Identities=22%  Similarity=0.267  Sum_probs=39.0

Q ss_pred             hcceeEEEeCh--hhHHHHhCCcc------CceEEEEecCCCCCeeEEEeeecCCCC
Q 034345            8 FLMWLITLFQS--QDVARDFGAAC------TPEFFLFKKDGRRPFQLVYHGQFDDSR   56 (97)
Q Consensus         8 ~~~fpvL~D~~--q~va~a~gA~~------TPe~fvld~~g~~~~~l~Y~G~IDd~~   56 (97)
                      .++||++.|.+  +++++.||+..      +|..||||++|    +++|++..++..
T Consensus        84 ~~~~~~~~D~~~~~~~~~~~g~~~~~~~~~~~~~~lid~~G----~v~~~~~~~~~~  136 (149)
T cd03018          84 GLTFPLLSDFWPHGEVAKAYGVFDEDLGVAERAVFVIDRDG----IIRYAWVSDDGE  136 (149)
T ss_pred             CCCceEecCCCchhHHHHHhCCccccCCCccceEEEECCCC----EEEEEEecCCcc
Confidence            57999999988  99999999874      34899999999    799999888754

AhpE is described as a 1-cys PRX because of the absence of a resolving cysteine. The structure and sequence of AhpE, however, show greater similarity to 2-cys PRXs than 1-cys PRXs. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. The first step of catalysis is the nucleophilic attack by the peroxidatic cysteine on the peroxide leading to the formation of a cysteine sulfenic acid intermediate. The absence of a resolving cysteine suggests that functional AhpE is regenerated by an external reductant. The solution behavior and crystal structure of AhpE show that it forms dimers and octamers.

>cd02967 mauD Methylamine utilization (mau) D family; mauD protein is the translation product of the mauD gene found in methylotrophic bacteria, which are able to use methylamine as a sole carbon source and a nitrogen source

Probab=98.10  E-value=5.1e-06  Score=53.83  Aligned_cols=36  Identities=14%  Similarity=0.248  Sum_probs=32.1

Q ss_pred             ceeEEEeChhhHHHHhCCccCceEEEEecCCCCCeeEEEeee
Q 034345           10 MWLITLFQSQDVARDFGAACTPEFFLFKKDGRRPFQLVYHGQ   51 (97)
Q Consensus        10 ~fpvL~D~~q~va~a~gA~~TPe~fvld~~g~~~~~l~Y~G~   51 (97)
                      .||++++  ++++++||+..+|+.||||++|    +++|+|=
T Consensus        78 ~~p~~~~--~~~~~~~~~~~~P~~~vid~~G----~v~~~~~  113 (114)
T cd02967          78 AFPYVLS--AELGMAYQVSKLPYAVLLDEAG----VIAAKGL  113 (114)
T ss_pred             CCcEEec--HHHHhhcCCCCcCeEEEECCCC----eEEeccc
Confidence            4899885  5799999999999999999999    8999983

mauD is an essential accessory protein for the biosynthesis of methylamine dehydrogenase (MADH), the enzyme that catalyzes the oxidation of methylamine and other primary amines. MADH possesses an alpha2beta2 subunit structure; the alpha subunit is also referred to as the large subunit. Each beta (small) subunit contains a tryptophan tryptophylquinone (TTQ) prosthetic group. Accessory proteins are essential for the proper transport of MADH to the periplasm, TTQ synthesis and the formation of several structural disulfide bonds. Bacterial mutants containing an insertion on the mauD gene were unable to grow on methylamine as a sole carbon source, were found to lack the MADH small subunit and had decreased amounts of the MADH large subunit.

>TIGR03137 AhpC peroxiredoxin

Probab=98.07  E-value=1.2e-05  Score=57.82  Aligned_cols=40  Identities=13%  Similarity=0.174  Sum_probs=35.3

Q ss_pred             hcceeEEEeChhhHHHHhCCc------cCceEEEEecCCCCCeeEEEeee
Q 034345            8 FLMWLITLFQSQDVARDFGAA------CTPEFFLFKKDGRRPFQLVYHGQ   51 (97)
Q Consensus         8 ~~~fpvL~D~~q~va~a~gA~------~TPe~fvld~~g~~~~~l~Y~G~   51 (97)
                      .++||++.|.+++++++||..      ..|..||||++|    +++|.-.
T Consensus        91 ~l~fpllsD~~~~~a~~~gv~~~~~g~~~p~tfiID~~G----~I~~~~~  136 (187)
T TIGR03137        91 KITYPMLGDPTGVLTRNFGVLIEEAGLADRGTFVIDPEG----VIQAVEI  136 (187)
T ss_pred             CcceeEEECCccHHHHHhCCcccCCCceeeEEEEECCCC----EEEEEEE
Confidence            689999999999999999976      469999999999    6777755

This gene contains two invariant cysteine residues, one near the N-terminus and one near the C-terminus, each followed immediately by a proline residue.

>PRK13189 peroxiredoxin; Provisional

Probab=98.03  E-value=2.8e-05  Score=57.88  Aligned_cols=77  Identities=10%  Similarity=0.187  Sum_probs=51.2

Q ss_pred             hcceeEEEeChhhHHHHhCCc-------cCceEEEEecCCCCCeeEEEeeecCCCCCCCCCCCcHHHHHHHHHHHHcCCC
Q 034345            8 FLMWLITLFQSQDVARDFGAA-------CTPEFFLFKKDGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECVLSGQP   80 (97)
Q Consensus         8 ~~~fpvL~D~~q~va~a~gA~-------~TPe~fvld~~g~~~~~l~Y~G~IDd~~~~~~~~~t~~~L~~Ai~alLaG~~   80 (97)
                      .++||++.|.+++++++||..       ..|.+||||++|    ++++.=.-+...     .....++-++|+++...++
T Consensus        97 ~i~fPllsD~~~~ia~~ygv~~~~~~~~~~r~tfIID~~G----~Ir~~~~~~~~~-----gr~~~eilr~l~alq~~~~  167 (222)
T PRK13189         97 EIEFPIIADDRGEIAKKLGMISPGKGTNTVRAVFIIDPKG----IIRAILYYPQEV-----GRNMDEILRLVKALQTSDE  167 (222)
T ss_pred             CcceeEEEcCccHHHHHhCCCccccCCCceeEEEEECCCC----eEEEEEecCCCC-----CCCHHHHHHHHHHhhhHhh
Confidence            479999999999999999965       458999999999    566552222221     1134567778887755332


Q ss_pred             CCCCCCCceeecCCC
Q 034345           81 VSSNQKPSIKWHPQT   95 (97)
Q Consensus        81 v~~~~t~~IKw~~~~   95 (97)
                      =.  ..-+..|++|+
T Consensus       168 ~~--~~~p~~w~~g~  180 (222)
T PRK13189        168 KG--VATPANWPPND  180 (222)
T ss_pred             cC--cCcCCCCCCCC
Confidence            21  11236777765

>TIGR02661 MauD methylamine dehydrogenase accessory protein MauD

Probab=97.99  E-value=1.3e-05  Score=57.80  Aligned_cols=56  Identities=20%  Similarity=0.183  Sum_probs=43.9

Q ss_pred             cceeEEEeChhhHHHHhCCccCceEEEEecCCCCCeeEEEeeecCCCCCCCCCCCcHHHHHHHHHHHHcCC
Q 034345            9 LMWLITLFQSQDVARDFGAACTPEFFLFKKDGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECVLSGQ   79 (97)
Q Consensus         9 ~~fpvL~D~~q~va~a~gA~~TPe~fvld~~g~~~~~l~Y~G~IDd~~~~~~~~~t~~~L~~Ai~alLaG~   79 (97)
                      ++||.+ +.+++++++||+..+|+.|+||++|    +++|+|.++          +...+++.++++-+|-
T Consensus       127 ~~~~~~-~~~~~i~~~y~v~~~P~~~lID~~G----~I~~~g~~~----------~~~~le~ll~~l~~~~  182 (189)
T TIGR02661       127 LGGERY-VVSAEIGMAFQVGKIPYGVLLDQDG----KIRAKGLTN----------TREHLESLLEADREGF  182 (189)
T ss_pred             CCccee-echhHHHHhccCCccceEEEECCCC----eEEEccCCC----------CHHHHHHHHHHHHcCc
Confidence            445533 3578999999999999999999999    799987532          2457889898887764

This protein, MauD, appears critical to proper formation of the small subunit of methylamine dehydrogenase, which has both an unusual tryptophan tryptophylquinone cofactor and multiple disulfide bonds. MauD shares sequence similarity, including a CPxC motif, with a number of thiol:disulfide interchange proteins. In MauD mutants, the small subunit apparently does not form properly and is rapidly degraded.

>cd03011 TlpA_like_ScsD_MtbDsbE TlpA-like family, suppressor for copper sensitivity D protein (ScsD) and actinobacterial DsbE homolog subfamily; composed of ScsD, the DsbE homolog of Mycobacterium tuberculosis (MtbDsbE) and similar proteins, all containing a redox-active CXXC motif

Probab=97.98  E-value=1.2e-05  Score=52.69  Aligned_cols=44  Identities=14%  Similarity=0.215  Sum_probs=38.3

Q ss_pred             hcceeEEEeChhhHHHHhCCccCceEEEEecCCCCCeeEEEeeecCC
Q 034345            8 FLMWLITLFQSQDVARDFGAACTPEFFLFKKDGRRPFQLVYHGQFDD   54 (97)
Q Consensus         8 ~~~fpvL~D~~q~va~a~gA~~TPe~fvld~~g~~~~~l~Y~G~IDd   54 (97)
                      .++||++.|+++++++.|+...+|..||+|++|   ++-++.|.++.
T Consensus        72 ~~~~~~~~d~~~~~~~~~~i~~~P~~~vid~~g---i~~~~~g~~~~  115 (123)
T cd03011          72 GYGFPVINDPDGVISARWGVSVTPAIVIVDPGG---IVFVTTGVTSE  115 (123)
T ss_pred             CCCccEEECCCcHHHHhCCCCcccEEEEEcCCC---eEEEEeccCCH
Confidence            478999999999999999999999999999988   46777776543

The Salmonella typhimurium ScsD is a thioredoxin-like protein which confers copper tolerance to copper-sensitive mutants of E. coli. MtbDsbE has been characterized as an oxidase in vitro, catalyzing the disulfide bond formation of substrates like hirudin. The reduced form of MtbDsbE is more stable than its oxidized form, consistent with an oxidase function. This is in contrast to the function of DsbE from gram-negative bacteria which is a specific reductase of apocytochrome c.

>PRK09437 bcp thioredoxin-dependent thiol peroxidase; Reviewed

Probab=97.96  E-value=2.4e-05  Score=53.69  Aligned_cols=41  Identities=24%  Similarity=0.397  Sum_probs=34.2

Q ss_pred             hcceeEEEeChhhHHHHhCCccC------------ceEEEEecCCCCCeeEEEee
Q 034345            8 FLMWLITLFQSQDVARDFGAACT------------PEFFLFKKDGRRPFQLVYHG   50 (97)
Q Consensus         8 ~~~fpvL~D~~q~va~a~gA~~T------------Pe~fvld~~g~~~~~l~Y~G   50 (97)
                      .++||+|.|+++.++++||+...            |+.||||++|+  ++.+|.|
T Consensus        86 ~~~~~~l~D~~~~~~~~~gv~~~~~~~~~~~~~~~~~~~lid~~G~--i~~~~~g  138 (154)
T PRK09437         86 LLNFTLLSDEDHQVAEQFGVWGEKKFMGKTYDGIHRISFLIDADGK--IEHVFDK  138 (154)
T ss_pred             CCCCeEEECCCchHHHHhCCCcccccccccccCcceEEEEECCCCE--EEEEEcC
Confidence            57899999999999999998654            67899999995  5556655

>PTZ00137 2-Cys peroxiredoxin; Provisional

Probab=97.95  E-value=4.6e-05  Score=58.62  Aligned_cols=62  Identities=16%  Similarity=0.094  Sum_probs=46.9

Q ss_pred             hhcceeEEEeChhhHHHHhCCc-----cCceEEEEecCCCCCeeEEEeeecCCCCCCCCCCCcHHHHHHHHHHHHc
Q 034345            7 LFLMWLITLFQSQDVARDFGAA-----CTPEFFLFKKDGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECVLS   77 (97)
Q Consensus         7 ~~~~fpvL~D~~q~va~a~gA~-----~TPe~fvld~~g~~~~~l~Y~G~IDd~~~~~~~~~t~~~L~~Ai~alLa   77 (97)
                      ..++||+|.|++++++++||..     ..|.+||||++|    +|+|.=.-|....     ....++-++|+++--
T Consensus       160 ~~l~fPlLsD~~~~iakayGv~~~~g~a~R~tFIID~dG----~I~~~~~~~~~~g-----r~v~eiLr~l~alq~  226 (261)
T PTZ00137        160 SPLKFPLFSDISREVSKSFGLLRDEGFSHRASVLVDKAG----VVKHVAVYDLGLG-----RSVDETLRLFDAVQF  226 (261)
T ss_pred             cCcceEEEEcCChHHHHHcCCCCcCCceecEEEEECCCC----EEEEEEEeCCCCC-----CCHHHHHHHHHHhch
Confidence            3688999999999999999975     589999999999    7888765443321     134566667776653

>cd02966 TlpA_like_family TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins

Probab=97.94  E-value=1.5e-05  Score=49.66  Aligned_cols=33  Identities=27%  Similarity=0.584  Sum_probs=31.4

Q ss_pred             cceeEEEeChhhHHHHhCCccCceEEEEecCCC
Q 034345            9 LMWLITLFQSQDVARDFGAACTPEFFLFKKDGR   41 (97)
Q Consensus         9 ~~fpvL~D~~q~va~a~gA~~TPe~fvld~~g~   41 (97)
                      .+||++.|+..++++.||...+|++||+|++|+
T Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~P~~~l~d~~g~  109 (116)
T cd02966          77 ITFPVLLDPDGELAKAYGVRGLPTTFLIDRDGR  109 (116)
T ss_pred             CCcceEEcCcchHHHhcCcCccceEEEECCCCc
Confidence            689999999999999999999999999999994

TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases.

>PRK10382 alkyl hydroperoxide reductase subunit C; Provisional

Probab=97.90  E-value=6.1e-05  Score=54.91  Aligned_cols=62  Identities=10%  Similarity=0.080  Sum_probs=44.9

Q ss_pred             hhcceeEEEeChhhHHHHhCCc------cCceEEEEecCCCCCeeEEEeeecCCCCCCCCCCCcHHHHHHHHHHHHc
Q 034345            7 LFLMWLITLFQSQDVARDFGAA------CTPEFFLFKKDGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECVLS   77 (97)
Q Consensus         7 ~~~~fpvL~D~~q~va~a~gA~------~TPe~fvld~~g~~~~~l~Y~G~IDd~~~~~~~~~t~~~L~~Ai~alLa   77 (97)
                      ..++||+|.|++++++++||..      ..|..||||++|    +++|.=.-+...     .....++-++|+++-.
T Consensus        90 ~~l~fpllsD~~~~ia~~ygv~~~~~g~~~r~tfIID~~G----~I~~~~~~~~~~-----~~~~~eil~~l~alq~  157 (187)
T PRK10382         90 AKIKYAMIGDPTGALTRNFDNMREDEGLADRATFVVDPQG----IIQAIEVTAEGI-----GRDASDLLRKIKAAQY  157 (187)
T ss_pred             cCCceeEEEcCchHHHHHcCCCcccCCceeeEEEEECCCC----EEEEEEEeCCCC-----CCCHHHHHHHHHhhhh
Confidence            3689999999999999999973      339999999999    788885433221     1234556666666543

>cd02970 PRX_like2 Peroxiredoxin (PRX)-like 2 family; hypothetical proteins that show sequence similarity to PRXs

Probab=97.89  E-value=1.9e-05  Score=52.91  Aligned_cols=38  Identities=21%  Similarity=0.446  Sum_probs=33.9

Q ss_pred             hcceeEEEeChhhHHHHhCCc-----------------------------cCceEEEEecCCCCCeeEEEe
Q 034345            8 FLMWLITLFQSQDVARDFGAA-----------------------------CTPEFFLFKKDGRRPFQLVYH   49 (97)
Q Consensus         8 ~~~fpvL~D~~q~va~a~gA~-----------------------------~TPe~fvld~~g~~~~~l~Y~   49 (97)
                      .++||++.|++++++++||..                             ..|..||||++|    +++|.
T Consensus        79 ~~~~p~~~D~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~fvid~~g----~i~~~  145 (149)
T cd02970          79 FLPFPVYADPDRKLYRALGLVRSLPWSNTPRALWKNAAIGFRGNDEGDGLQLPGVFVIGPDG----TILFA  145 (149)
T ss_pred             CCCCeEEECCchhHHHHcCceecCcHHHHHHHHhhCcccccccCCCCcccccceEEEECCCC----eEEEE
Confidence            578999999999999999984                             799999999999    56664

Members of this group contain a CXXC motif, similar to TRX. The second cysteine in the motif corresponds to the peroxidatic cysteine of PRX, however, these proteins do not contain the other two residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. TRXs alter the redox state of target proteins by catalyzing the reduction of their disulfide bonds via the CXXC motif using reducing equivalents derived from either NADPH or ferredoxins.

>PRK13728 conjugal transfer protein TrbB; Provisional

Probab=97.89  E-value=3.2e-05  Score=56.80  Aligned_cols=56  Identities=20%  Similarity=0.224  Sum_probs=44.4

Q ss_pred             cceeEEEe-ChhhHHHHhCC--ccCceEEEEecCCCCCeeE-EEeeecCCCCCCCCCCCcHHHHHHHHHHHHc
Q 034345            9 LMWLITLF-QSQDVARDFGA--ACTPEFFLFKKDGRRPFQL-VYHGQFDDSRPSNNLPVTGRDIRLAIECVLS   77 (97)
Q Consensus         9 ~~fpvL~D-~~q~va~a~gA--~~TPe~fvld~~g~~~~~l-~Y~G~IDd~~~~~~~~~t~~~L~~Ai~alLa   77 (97)
                      ..||+++| +.+.+.+.||.  ..+|+.||+|++|+  +.. .+.|.+|..           .|+..|+.+++
T Consensus       113 ~~fPv~~dd~~~~~~~~~g~~~~~iPttfLId~~G~--i~~~~~~G~~~~~-----------~L~~~I~~ll~  172 (181)
T PRK13728        113 TAFPEALPAPPDVMQTFFPNIPVATPTTFLVNVNTL--EALPLLQGATDAA-----------GFMARMDTVLQ  172 (181)
T ss_pred             CCCceEecCchhHHHHHhCCCCCCCCeEEEEeCCCc--EEEEEEECCCCHH-----------HHHHHHHHHHh
Confidence            57999996 66778899995  69999999999995  222 589988755           67777877775

>cd02971 PRX_family Peroxiredoxin (PRX) family; composed of the different classes of PRXs including many proteins originally known as bacterioferritin comigratory proteins (BCP), based on their electrophoretic mobility before their function was identified

Probab=97.87  E-value=2.4e-05  Score=52.11  Aligned_cols=41  Identities=17%  Similarity=0.247  Sum_probs=35.8

Q ss_pred             hcceeEEEeChhhHHHHhCCccCc---------eEEEEecCCCCCeeEEEeeec
Q 034345            8 FLMWLITLFQSQDVARDFGAACTP---------EFFLFKKDGRRPFQLVYHGQF   52 (97)
Q Consensus         8 ~~~fpvL~D~~q~va~a~gA~~TP---------e~fvld~~g~~~~~l~Y~G~I   52 (97)
                      ..+||+|.|+.+.++++||+..+|         .+||||++|    +++|++.-
T Consensus        79 ~~~~~~l~D~~~~~~~~~g~~~~~~~~~~~~~p~~~lid~~g----~i~~~~~~  128 (140)
T cd02971          79 GLNFPLLSDPDGEFAKAYGVLIEKSAGGGLAARATFIIDPDG----KIRYVEVE  128 (140)
T ss_pred             CCCceEEECCChHHHHHcCCccccccccCceeEEEEEECCCC----cEEEEEec
Confidence            578999999999999999999887         699999999    67777553

PRXs are thiol-specific antioxidant (TSA) proteins also known as TRX peroxidases and alkyl hydroperoxide reductase C22 (AhpC) proteins. They confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either TRX, glutathione, trypanothione and AhpF. They are distinct from other peroxidases in that they have no cofactors such as metals or prosthetic groups. The first step of catalysis, common to all PRXs, is the nucleophilic attack by the catalytic cysteine (also known as the peroxidatic cysteine) on the peroxide leading to cleavage of the oxygen-oxygen bond and the formation of a

>PRK00522 tpx lipid hydroperoxide peroxidase; Provisional

Probab=97.84  E-value=6.1e-05  Score=53.22  Aligned_cols=57  Identities=14%  Similarity=0.259  Sum_probs=42.7

Q ss_pred             hcc-eeEEEe-ChhhHHHHhCCccCc---------eEEEEecCCCCCeeEEEeeecCCCCCCCCCCCcHHHHHHHHHHH
Q 034345            8 FLM-WLITLF-QSQDVARDFGAACTP---------EFFLFKKDGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECV   75 (97)
Q Consensus         8 ~~~-fpvL~D-~~q~va~a~gA~~TP---------e~fvld~~g~~~~~l~Y~G~IDd~~~~~~~~~t~~~L~~Ai~al   75 (97)
                      .++ ||++.| +.++++++||+...|         ++||||++|    +++|.-..++....       ..++++|+++
T Consensus        98 ~~~~~~~lsD~~~~~~~~~~gv~~~~~~~~g~~~r~tfvId~~G----~I~~~~~~~~~~~~-------~~~~~~l~~l  165 (167)
T PRK00522         98 GLENVITLSDFRDHSFGKAYGVAIAEGPLKGLLARAVFVLDENN----KVVYSELVPEITNE-------PDYDAALAAL  165 (167)
T ss_pred             CCCCceEeecCCccHHHHHhCCeecccccCCceeeEEEEECCCC----eEEEEEECCCcCCC-------CCHHHHHHHh
Confidence            344 789999 556999999998877         999999999    79999876664321       1355666554

>PLN02412 probable glutathione peroxidase

Probab=97.83  E-value=2.4e-05  Score=55.35  Aligned_cols=57  Identities=18%  Similarity=0.103  Sum_probs=42.1

Q ss_pred             hcceeEEEe--Chh-hHHHHhC-------------CccCceEEEEecCCCCCeeEEEeeecCCCCCCCCCCCcHHHHHHH
Q 034345            8 FLMWLITLF--QSQ-DVARDFG-------------AACTPEFFLFKKDGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLA   71 (97)
Q Consensus         8 ~~~fpvL~D--~~q-~va~a~g-------------A~~TPe~fvld~~g~~~~~l~Y~G~IDd~~~~~~~~~t~~~L~~A   71 (97)
                      .++||++.|  .++ .+++.|+             ..-+|+.||||++|+  ++-+|.|.++-           ..|+.+
T Consensus        93 ~~~fpvl~~~d~~g~~~~~~~~~~~~~~~~~~~~~v~~~p~tflId~~G~--vv~~~~g~~~~-----------~~l~~~  159 (167)
T PLN02412         93 KAEFPIFDKVDVNGKNTAPLYKYLKAEKGGLFGDAIKWNFTKFLVSKEGK--VVQRYAPTTSP-----------LKIEKD  159 (167)
T ss_pred             CCCCceEeEEeeCCCCCCHHHHHHHhhCCCCCCCCcCCCCeeEEECCCCc--EEEEECCCCCH-----------HHHHHH
Confidence            589999874  553 7777775             334799999999996  56666666532           368888


Q ss_pred             HHHHHc
Q 034345           72 IECVLS   77 (97)
Q Consensus        72 i~alLa   77 (97)
                      |+++|+
T Consensus       160 i~~~l~  165 (167)
T PLN02412        160 IQNLLG  165 (167)
T ss_pred             HHHHHh
Confidence            988875

>PLN02399 phospholipid hydroperoxide glutathione peroxidase

Probab=97.70  E-value=4.5e-05  Score=57.81  Aligned_cols=58  Identities=19%  Similarity=0.120  Sum_probs=41.6

Q ss_pred             hhcceeEEE--eChh-hHHHHhC-------C------ccCceEEEEecCCCCCeeEEEeeecCCCCCCCCCCCcHHHHHH
Q 034345            7 LFLMWLITL--FQSQ-DVARDFG-------A------ACTPEFFLFKKDGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRL   70 (97)
Q Consensus         7 ~~~~fpvL~--D~~q-~va~a~g-------A------~~TPe~fvld~~g~~~~~l~Y~G~IDd~~~~~~~~~t~~~L~~   70 (97)
                      ..++||++.  |.++ .++..|+       .      ...|+.||||++|+  ++-+|.|.++..           .|+.
T Consensus       162 ~g~~fPvl~~~D~~G~~~~~~y~~l~~~~~~~~g~~i~~~PttfLIDk~Gk--Vv~~~~G~~~~~-----------~le~  228 (236)
T PLN02399        162 FKAEFPIFDKVDVNGPSTAPVYQFLKSNAGGFLGDLIKWNFEKFLVDKNGK--VVERYPPTTSPF-----------QIEK  228 (236)
T ss_pred             cCCCCccccccCCCcchhhHHHHHHHHhcCCccCCccccCceEEEECCCCc--EEEEECCCCCHH-----------HHHH
Confidence            367899984  4445 4545553       1      23699999999997  677788876332           7899


Q ss_pred             HHHHHHc
Q 034345           71 AIECVLS   77 (97)
Q Consensus        71 Ai~alLa   77 (97)
                      .|+.+|+
T Consensus       229 ~I~~lL~  235 (236)
T PLN02399        229 DIQKLLA  235 (236)
T ss_pred             HHHHHhc
Confidence            9999886

>PRK13191 putative peroxiredoxin; Provisional

Probab=97.59  E-value=0.00031  Score=52.14  Aligned_cols=60  Identities=15%  Similarity=0.117  Sum_probs=42.6

Q ss_pred             hcceeEEEeChhhHHHHhCCc-------cCceEEEEecCCCCCeeEEEeeecCCCCCCCCCCCcHHHHHHHHHHHH
Q 034345            8 FLMWLITLFQSQDVARDFGAA-------CTPEFFLFKKDGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECVL   76 (97)
Q Consensus         8 ~~~fpvL~D~~q~va~a~gA~-------~TPe~fvld~~g~~~~~l~Y~G~IDd~~~~~~~~~t~~~L~~Ai~alL   76 (97)
                      .++||+|.|.+++++++||..       ..|.+||||++|    +++|.=.-+...  +   ....++-++|+++-
T Consensus        95 ~i~fPllsD~~~~ia~~ygv~~~~~~~~~~r~tfIID~~G----~Ir~~~~~~~~~--g---r~~~eilr~l~alq  161 (215)
T PRK13191         95 EVPFPIIADPMGNVAKRLGMIHAESSTATVRAVFIVDDKG----TVRLILYYPMEI--G---RNIDEILRAIRALQ  161 (215)
T ss_pred             CCceEEEECCchHHHHHcCCcccccCCceeEEEEEECCCC----EEEEEEecCCCC--C---CCHHHHHHHHHHhh
Confidence            588999999999999999963       469999999999    566642222221  1   13446666676653

>TIGR02540 gpx7 putative glutathione peroxidase Gpx7

Probab=97.38  E-value=0.00017  Score=49.78  Aligned_cols=56  Identities=14%  Similarity=0.167  Sum_probs=39.1

Q ss_pred             hcceeEEEe-----ChhhHHHHhCCc---cCce----EEEEecCCCCCeeEEEeeecCCCCCCCCCCCcHHHHHHHHHHH
Q 034345            8 FLMWLITLF-----QSQDVARDFGAA---CTPE----FFLFKKDGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECV   75 (97)
Q Consensus         8 ~~~fpvL~D-----~~q~va~a~gA~---~TPe----~fvld~~g~~~~~l~Y~G~IDd~~~~~~~~~t~~~L~~Ai~al   75 (97)
                      .++||++.|     +....+-.|+..   ..|+    .||||++|+  ++.+|.|.++..           .|+..|+.+
T Consensus        86 ~~~fp~~~d~~~~~~~~~~~~~~~~~~~~~~p~~~~~tflID~~G~--v~~~~~g~~~~~-----------~l~~~i~~l  152 (153)
T TIGR02540        86 GVTFPMFSKIKILGSEAEPAFRFLVDSSKKEPRWNFWKYLVNPEGQ--VVKFWRPEEPVE-----------EIRPEITAL  152 (153)
T ss_pred             CCCCCccceEecCCCCCCcHHHHHHhcCCCCCCCccEEEEEcCCCc--EEEEECCCCCHH-----------HHHHHHHHh
Confidence            678999987     333444445433   4798    999999997  777888875433           677777766


Q ss_pred             H
Q 034345           76 L   76 (97)
Q Consensus        76 L   76 (97)
                      +
T Consensus       153 ~  153 (153)
T TIGR02540       153 V  153 (153)
T ss_pred             C
Confidence            4

This model represents one of several families of known and probable glutathione peroxidases. This family is restricted to animals and designated GPX7.

>COG1225 Bcp Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]

Probab=97.32  E-value=0.00035  Score=50.38  Aligned_cols=40  Identities=20%  Similarity=0.257  Sum_probs=33.6

Q ss_pred             hhcceeEEEeChhhHHHHhCCcc------------CceEEEEecCCCCCeeEEEee
Q 034345            7 LFLMWLITLFQSQDVARDFGAAC------------TPEFFLFKKDGRRPFQLVYHG   50 (97)
Q Consensus         7 ~~~~fpvL~D~~q~va~a~gA~~------------TPe~fvld~~g~~~~~l~Y~G   50 (97)
                      ..++||.|-|++++|+++||+..            -+..||||++|    +++|.=
T Consensus        85 ~~L~f~LLSD~~~~v~~~ygv~~~k~~~gk~~~~~~R~TfvId~dG----~I~~~~  136 (157)
T COG1225          85 HGLTFPLLSDEDGEVAEAYGVWGEKKMYGKEYMGIERSTFVIDPDG----KIRYVW  136 (157)
T ss_pred             hCCCceeeECCcHHHHHHhCcccccccCccccccccceEEEECCCC----eEEEEe
Confidence            36889999999999999999743            46799999999    566653

>PTZ00256 glutathione peroxidase; Provisional

Probab=97.27  E-value=0.00041  Score=49.67  Aligned_cols=57  Identities=14%  Similarity=0.161  Sum_probs=38.9

Q ss_pred             hcceeEEEe--ChhhH-HHHh---------------CCccCce---EEEEecCCCCCeeEEEeeecCCCCCCCCCCCcHH
Q 034345            8 FLMWLITLF--QSQDV-ARDF---------------GAACTPE---FFLFKKDGRRPFQLVYHGQFDDSRPSNNLPVTGR   66 (97)
Q Consensus         8 ~~~fpvL~D--~~q~v-a~a~---------------gA~~TPe---~fvld~~g~~~~~l~Y~G~IDd~~~~~~~~~t~~   66 (97)
                      .++||++.|  .++.. ++.|               +....|+   .||||++|+  ++-+|.|.++..           
T Consensus       105 ~~~fpv~~d~d~~g~~~~~~~~~l~~~~~~~~~~~~~~~~iP~~~~tflID~~G~--Iv~~~~g~~~~~-----------  171 (183)
T PTZ00256        105 NVDFPLFQKIEVNGENTHEIYKYLRRNSELFQNNTNEARQIPWNFAKFLIDGQGK--VVKYFSPKVNPN-----------  171 (183)
T ss_pred             CCCCCCceEEecCCCCCCHHHHHHHhhCCCCcCccccCcccCcceEEEEECCCCC--EEEEECCCCCHH-----------
Confidence            678999954  55544 3444               4557795   699999996  555666755332           


Q ss_pred             HHHHHHHHHHc
Q 034345           67 DIRLAIECVLS   77 (97)
Q Consensus        67 ~L~~Ai~alLa   77 (97)
                      .+++.|+.+|+
T Consensus       172 ~l~~~I~~ll~  182 (183)
T PTZ00256        172 EMIQDIEKLLN  182 (183)
T ss_pred             HHHHHHHHHhc
Confidence            57788888875

>cd00340 GSH_Peroxidase Glutathione (GSH) peroxidase family; tetrameric selenoenzymes that catalyze the reduction of a variety of hydroperoxides including lipid peroxidases, using GSH as a specific electron donor substrate

Probab=97.26  E-value=0.0002  Score=49.44  Aligned_cols=45  Identities=13%  Similarity=0.140  Sum_probs=33.4

Q ss_pred             hcceeEEEeC--hhh-HHHHhC--CccCc-----------eEEEEecCCCCCeeEEEeeecCC
Q 034345            8 FLMWLITLFQ--SQD-VARDFG--AACTP-----------EFFLFKKDGRRPFQLVYHGQFDD   54 (97)
Q Consensus         8 ~~~fpvL~D~--~q~-va~a~g--A~~TP-----------e~fvld~~g~~~~~l~Y~G~IDd   54 (97)
                      .++||++.|.  ++. .+++|+  ....|           +.||||++|+  ++-+|.|.++.
T Consensus        85 ~~~fp~~~d~d~~~~~~~~~~~~~~~~~p~~~~~~~~~~~ttflId~~G~--i~~~~~G~~~~  145 (152)
T cd00340          85 GVTFPMFAKIDVNGENAHPLYKYLKEEAPGLLGKDIKWNFTKFLVDRDGE--VVKRFAPTTDP  145 (152)
T ss_pred             CCCceeeeeEeccCCCCChHHHHHHhcCCCCCCCccccccEEEEECCCCc--EEEEECCCCCH
Confidence            5789999873  444 567777  35666           7999999996  66778887643

GSH peroxidase contains one selenocysteine residue per subunit, which is involved in catalysis. Different isoenzymes are known in mammals,which are involved in protection against reactive oxygen species, redox regulation of many metabolic processes, peroxinitrite scavenging, and modulation of inflammatory processes.

>TIGR02738 TrbB type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB

Probab=97.19  E-value=0.00054  Score=48.62  Aligned_cols=54  Identities=22%  Similarity=0.329  Sum_probs=36.5

Q ss_pred             ceeEEEeChhhHH-HHh---CCccCceEEEEecCCCCCeeE-EEeeecCCCCCCCCCCCcHHHHHHHHHHHH
Q 034345           10 MWLITLFQSQDVA-RDF---GAACTPEFFLFKKDGRRPFQL-VYHGQFDDSRPSNNLPVTGRDIRLAIECVL   76 (97)
Q Consensus        10 ~fpvL~D~~q~va-~a~---gA~~TPe~fvld~~g~~~~~l-~Y~G~IDd~~~~~~~~~t~~~L~~Ai~alL   76 (97)
                      .||+.+|.++... +.|   |...+|+.||||++|.  ... ++.|.++..           .+++.|+.+|
T Consensus        95 ~fp~~~~~~~~~~~~~~~~~~v~~iPTt~LID~~G~--~i~~~~~G~~s~~-----------~l~~~I~~ll  153 (153)
T TIGR02738        95 GFPDPLPATPEVMQTFFPNPRPVVTPATFLVNVNTR--KAYPVLQGAVDEA-----------ELANRMDEIL  153 (153)
T ss_pred             ccccccCCchHHHHHHhccCCCCCCCeEEEEeCCCC--EEEEEeecccCHH-----------HHHHHHHHhC
Confidence            4666666555554 455   7889999999999984  112 467765433           5777777664

This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold, contains a conserved pair of cysteines and has been shown to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. The protein is closely related to TraF (TIGR02739) which is somewhat longer, lacks the cysteine motif and is apparently not functional as a disulfide bond isomerase.

>cd02950 TxlA TRX-like protein A (TxlA) family; TxlA was originally isolated from the cyanobacterium Synechococcus

Probab=97.17  E-value=0.0012  Score=45.74  Aligned_cols=53  Identities=11%  Similarity=0.263  Sum_probs=42.0

Q ss_pred             hhHHHHhCCccCceEEEEecCCCCCeeEEEeeecCCCCCCCCCCCcHHHHHHHHHHHHcCCCCCCC
Q 034345           19 QDVARDFGAACTPEFFLFKKDGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECVLSGQPVSSN   84 (97)
Q Consensus        19 q~va~a~gA~~TPe~fvld~~g~~~~~l~Y~G~IDd~~~~~~~~~t~~~L~~Ai~alLaG~~v~~~   84 (97)
                      ..+++.||....|++++||++|+  +.-++.|...           ...|++.|+++++|.+.+..
T Consensus        66 ~~~~~~~~V~~iPt~v~~~~~G~--~v~~~~G~~~-----------~~~l~~~l~~l~~~~~~~~~  118 (142)
T cd02950          66 LPEIDRYRVDGIPHFVFLDREGN--EEGQSIGLQP-----------KQVLAQNLDALVAGEPLPYA  118 (142)
T ss_pred             HHHHHHcCCCCCCEEEEECCCCC--EEEEEeCCCC-----------HHHHHHHHHHHHcCCCCCcc
Confidence            37899999999999999999995  3445667432           34799999999999876654

It is found only in oxygenic photosynthetic organisms. TRX is a small enzyme that participate in redox reactions, via the reversible oxidation of an active site dithiol present in a CXXC motif. Disruption of the txlA gene suggests that the protein is involved in the redox regulation of the structure and function of photosynthetic apparatus. The plant homolog (designated as HCF164) is localized in the chloroplast and is involved in the assembly of the cytochrome b6f complex, which takes a central position in photosynthetic electron transport.

>cd02968 SCO SCO (an acronym for Synthesis of Cytochrome c Oxidase) family; composed of proteins similar to Sco1, a membrane-anchored protein possessing a soluble domain with a TRX fold

Probab=97.17  E-value=0.00049  Score=45.95  Aligned_cols=40  Identities=23%  Similarity=0.454  Sum_probs=31.4

Q ss_pred             cceeEEEeCh---hhHHHHhCCcc--------------CceEEEEecCCCCCeeEEEee
Q 034345            9 LMWLITLFQS---QDVARDFGAAC--------------TPEFFLFKKDGRRPFQLVYHG   50 (97)
Q Consensus         9 ~~fpvL~D~~---q~va~a~gA~~--------------TPe~fvld~~g~~~~~l~Y~G   50 (97)
                      .+||+|.|+.   +.++++||+..              +|..||||++|+  ++-.|+|
T Consensus        86 ~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~lid~~G~--i~~~~~~  142 (142)
T cd02968          86 PGWIGLTGTPEEIEALAKAFGVYYEKVPEDDGDYLVDHSAAIYLVDPDGK--LVRYYGG  142 (142)
T ss_pred             CCcEEEECCHHHHHHHHHHhcEEEEecCCCCCceeEeccceEEEECCCCC--EEEeecC
Confidence            5899999975   89999999653              467999999995  4555543

Members of this family are required for the proper assembly of cytochrome c oxidase (COX). They contain a metal binding motif, typically CXXXC, which is located in a flexible loop. COX, the terminal enzyme in the respiratory chain, is imbedded in the inner mitochondrial membrane of all eukaryotes and in the plasma membrane of some prokaryotes. It is composed of two subunits, COX I and COX II. It has been proposed that Sco1 specifically delivers copper to the CuA site, a dinuclear copper center, of the COX II subunit. Mutations in human Sco1 and Sco2 cause fatal infantile hepatoencephalomyopathy and cardioencephalomyopathy, respectively. Both disorders are associated with severe COX deficiency in affected tissues. More recently, it has been argued that the redox sensitivity of the copper binding properti

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=97.11  E-value=0.00083  Score=59.88  Aligned_cols=57  Identities=16%  Similarity=0.233  Sum_probs=45.0

Q ss_pred             hcceeEEEeChhhHHHHhCCccCceEEEEecCCCCCeeEEEeeecCCCCCCCCCCCcHHHHHHHHHHHHc
Q 034345            8 FLMWLITLFQSQDVARDFGAACTPEFFLFKKDGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECVLS   77 (97)
Q Consensus         8 ~~~fpvL~D~~q~va~a~gA~~TPe~fvld~~g~~~~~l~Y~G~IDd~~~~~~~~~t~~~L~~Ai~alLa   77 (97)
                      .+.||++.|..+.+++.||...+|+.||||++|+  +.-++.|..+           ...|++.|++++.
T Consensus       481 ~i~~pvv~D~~~~~~~~~~V~~iPt~ilid~~G~--iv~~~~G~~~-----------~~~l~~~l~~~l~  537 (1057)
T PLN02919        481 NISHPVVNDGDMYLWRELGVSSWPTFAVVSPNGK--LIAQLSGEGH-----------RKDLDDLVEAALQ  537 (1057)
T ss_pred             CCCccEEECCchHHHHhcCCCccceEEEECCCCe--EEEEEecccC-----------HHHHHHHHHHHHH
Confidence            4679999999999999999999999999999995  4445666432           2367777777655

>cd03014 PRX_Atyp2cys Peroxiredoxin (PRX) family, Atypical 2-cys PRX subfamily; composed of PRXs containing peroxidatic and resolving cysteines, similar to the homodimeric thiol specific antioxidant (TSA) protein also known as TRX-dependent thiol peroxidase (Tpx)

Probab=97.07  E-value=0.00094  Score=44.99  Aligned_cols=38  Identities=11%  Similarity=0.215  Sum_probs=31.9

Q ss_pred             cceeEEEeCh-hhHHHHhCCcc------CceEEEEecCCCCCeeEEEee
Q 034345            9 LMWLITLFQS-QDVARDFGAAC------TPEFFLFKKDGRRPFQLVYHG   50 (97)
Q Consensus         9 ~~fpvL~D~~-q~va~a~gA~~------TPe~fvld~~g~~~~~l~Y~G   50 (97)
                      .+||++.|.. +.++++||+..      .|..||||++|    +++|.-
T Consensus        82 ~~~~~l~D~~~~~~~~~~gv~~~~~~~~~~~~~iid~~G----~I~~~~  126 (143)
T cd03014          82 DNVTTLSDFRDHSFGKAYGVLIKDLGLLARAVFVIDENG----KVIYVE  126 (143)
T ss_pred             CCceEeecCcccHHHHHhCCeeccCCccceEEEEEcCCC----eEEEEE
Confidence            3799999996 99999999864      79999999999    555553

Tpx is a bacterial periplasmic peroxidase which differs from other PRXs in that it shows substrate specificity toward alkyl hydroperoxides over hydrogen peroxide. As with all other PRXs, the peroxidatic cysteine (N-terminal) of Tpx is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Tpx is able to resolve this intermediate by forming an intramolecular disulfide bond with a conserved C-terminal cysteine (the resolving cysteine), which can then be reduced by thioredoxin. This differs from the typical 2-cys PRX which resolves the oxidized cysteine by forming an intermolecular disulfide bond with the resolving cysteine from the other subunit of the homodimer. Atypical 2-cys PRX homodimers have a loop-based

>PRK14018 trifunctional thioredoxin/methionine sulfoxide reductase A/B protein; Provisional

Probab=97.04  E-value=0.0013  Score=55.00  Aligned_cols=42  Identities=17%  Similarity=0.289  Sum_probs=36.4

Q ss_pred             ceeEEEeChhhHHHHhCCccCceEEEEecCCCCCeeEEEeeecC
Q 034345           10 MWLITLFQSQDVARDFGAACTPEFFLFKKDGRRPFQLVYHGQFD   53 (97)
Q Consensus        10 ~fpvL~D~~q~va~a~gA~~TPe~fvld~~g~~~~~l~Y~G~ID   53 (97)
                      .||++.|..+.++++||....|+.||||++|+  ++-++.|.++
T Consensus       120 ~~pV~~D~~~~lak~fgV~giPTt~IIDkdGk--IV~~~~G~~~  161 (521)
T PRK14018        120 KLPVLTDNGGTLAQSLNISVYPSWAIIGKDGD--VQRIVKGSIS  161 (521)
T ss_pred             ccceeccccHHHHHHcCCCCcCeEEEEcCCCe--EEEEEeCCCC
Confidence            46999999999999999999999999999995  4556778764

>COG0450 AhpC Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]

Probab=96.86  E-value=0.0044  Score=46.22  Aligned_cols=61  Identities=13%  Similarity=0.097  Sum_probs=45.0

Q ss_pred             hcceeEEEeChhhHHHHhCCccCc------eEEEEecCCCCCeeEEEeeecCCCCCCCCCCCcHHHHHHHHHHHHc
Q 034345            8 FLMWLITLFQSQDVARDFGAACTP------EFFLFKKDGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECVLS   77 (97)
Q Consensus         8 ~~~fpvL~D~~q~va~a~gA~~TP------e~fvld~~g~~~~~l~Y~G~IDd~~~~~~~~~t~~~L~~Ai~alLa   77 (97)
                      +++||++-|.+++|+++||...-.      -+||||++|    ++++.=-.+..-.+     ...++-..|++|--
T Consensus        96 ~i~~PmiaD~~~~vs~~ygvl~~~~g~a~R~~FIIDp~g----~ir~~~v~~~~iGR-----n~dEilR~idAlq~  162 (194)
T COG0450          96 KIKFPMIADPKGEIARAYGVLHPEEGLALRGTFIIDPDG----VIRHILVNPLTIGR-----NVDEILRVIDALQF  162 (194)
T ss_pred             ceecceEEcCchhHHHHcCCcccCCCcceeEEEEECCCC----eEEEEEEecCCCCc-----CHHHHHHHHHHHHH
Confidence            489999999999999999976533      479999999    78888665555322     23455566666554

>cd03009 TryX_like_TryX_NRX Tryparedoxin (TryX)-like family, TryX and nucleoredoxin (NRX) subfamily; TryX and NRX are thioredoxin (TRX)-like protein disulfide oxidoreductases that alter the redox state of target proteins via the reversible oxidation of an active center CXXC motif

Probab=96.79  E-value=0.00058  Score=45.49  Aligned_cols=33  Identities=18%  Similarity=0.346  Sum_probs=28.1

Q ss_pred             eChhhHHHHhCCccCceEEEEecCCCCCeeEEEeeec
Q 034345           16 FQSQDVARDFGAACTPEFFLFKKDGRRPFQLVYHGQF   52 (97)
Q Consensus        16 D~~q~va~a~gA~~TPe~fvld~~g~~~~~l~Y~G~I   52 (97)
                      |..+.++++||...+|++||||++|    +++++.++
T Consensus        86 ~~~~~~~~~~~v~~~P~~~lid~~G----~i~~~~~~  118 (131)
T cd03009          86 ERRSRLNRTFKIEGIPTLIILDADG----EVVTTDAR  118 (131)
T ss_pred             HHHHHHHHHcCCCCCCEEEEECCCC----CEEcccHH
Confidence            5567899999999999999999999    67776554

TryX is involved in the regulation of oxidative stress in parasitic trypanosomatids by reducing TryX peroxidase, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. TryX derives reducing equivalents from reduced trypanothione, a polyamine peptide conjugate unique to trypanosomatids, which is regenerated by the NADPH-dependent flavoprotein trypanothione reductase. Vertebrate NRX is a 400-amino acid nuclear protein with one redox active TRX domain containing a CPPC active site motif followed by one redox inactive TRX-like domain. Mouse NRX transcripts are expressed in all adult tissues but is restricted to the nervous system and limb buds in embryos. Plant NRX, longer than the

>PTZ00056 glutathione peroxidase; Provisional

Probab=96.65  E-value=0.0026  Score=46.44  Aligned_cols=59  Identities=12%  Similarity=0.080  Sum_probs=37.1

Q ss_pred             hcceeEEEeC------hhh--------HHHHhCCccC-------ceEEEEecCCCCCeeEEEeeecCCCCCCCCCCCcHH
Q 034345            8 FLMWLITLFQ------SQD--------VARDFGAACT-------PEFFLFKKDGRRPFQLVYHGQFDDSRPSNNLPVTGR   66 (97)
Q Consensus         8 ~~~fpvL~D~------~q~--------va~a~gA~~T-------Pe~fvld~~g~~~~~l~Y~G~IDd~~~~~~~~~t~~   66 (97)
                      .++||++.|.      .+.        ++..|+...+       |+.||||++|+  ++-+|.|.++.           .
T Consensus       102 ~~~fpvl~d~~v~g~~~~~l~~~l~~~~~~~~d~~~~~~~i~~~~~tflID~~G~--iv~~~~g~~~~-----------~  168 (199)
T PTZ00056        102 KIKYNFFEPIEVNGENTHELFKFLKANCDSMHDENGTLKAIGWNFGKFLVNKSGN--VVAYFSPRTEP-----------L  168 (199)
T ss_pred             CCCceeeeeeeccCCccCHHHHHHHHhCcccccccccCCccCCCCEEEEECCCCc--EEEEeCCCCCH-----------H
Confidence            5789999762      222        3334443322       37999999996  44455554422           2


Q ss_pred             HHHHHHHHHHcCC
Q 034345           67 DIRLAIECVLSGQ   79 (97)
Q Consensus        67 ~L~~Ai~alLaG~   79 (97)
                      .|+..|+.+|+.+
T Consensus       169 ~l~~~I~~ll~~~  181 (199)
T PTZ00056        169 ELEKKIAELLGVK  181 (199)
T ss_pred             HHHHHHHHHHHHH
Confidence            6888899888764

>cd02951 SoxW SoxW family; SoxW is a bacterial periplasmic TRX, containing a redox active CXXC motif, encoded by a genetic locus (sox operon) involved in thiosulfate oxidation

Probab=96.54  E-value=0.0044  Score=41.04  Aligned_cols=47  Identities=17%  Similarity=0.303  Sum_probs=35.7

Q ss_pred             hhHHHHhCCccCceEEEEecC-CCCCeeEEEeeecCCCCCCCCCCCcHHHHHHHHHHHHcC
Q 034345           19 QDVARDFGAACTPEFFLFKKD-GRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECVLSG   78 (97)
Q Consensus        19 q~va~a~gA~~TPe~fvld~~-g~~~~~l~Y~G~IDd~~~~~~~~~t~~~L~~Ai~alLaG   78 (97)
                      ++++++|+...+|++++++++ |+  ...++.|...           ...+...|+.++++
T Consensus        74 ~~l~~~~~v~~~Pt~~~~~~~gg~--~~~~~~G~~~-----------~~~~~~~l~~~~~~  121 (125)
T cd02951          74 KELARKYRVRFTPTVIFLDPEGGK--EIARLPGYLP-----------PDEFLAYLEYVQEK  121 (125)
T ss_pred             HHHHHHcCCccccEEEEEcCCCCc--eeEEecCCCC-----------HHHHHHHHHHHHhh
Confidence            689999999999999999999 64  3556666532           23677777777764

Sulfur bacteria oxidize sulfur compounds to provide reducing equivalents for carbon dioxide fixation during autotrophic growth and the respiratory electron transport chain. It is unclear what the role of SoxW is, since it has been found to be dispensable in the oxidation of thiosulfate to sulfate. SoxW is specifically kept in the reduced state by SoxV, which is essential in thiosulfate oxidation.

>cd03008 TryX_like_RdCVF Tryparedoxin (TryX)-like family, Rod-derived cone viability factor (RdCVF) subfamily; RdCVF is a thioredoxin (TRX)-like protein specifically expressed in photoreceptors

Probab=96.45  E-value=0.0042  Score=43.94  Aligned_cols=36  Identities=14%  Similarity=0.229  Sum_probs=28.9

Q ss_pred             eEEEeChhhHHHHhCCccCceEEEEecCCCCCeeEEEeee
Q 034345           12 LITLFQSQDVARDFGAACTPEFFLFKKDGRRPFQLVYHGQ   51 (97)
Q Consensus        12 pvL~D~~q~va~a~gA~~TPe~fvld~~g~~~~~l~Y~G~   51 (97)
                      |+..+..+.++++||+...|+.||||++|    +++.++.
T Consensus        95 p~~~~~~~~l~~~y~v~~iPt~vlId~~G----~Vv~~~~  130 (146)
T cd03008          95 PFEDEFRRELEAQFSVEELPTVVVLKPDG----DVLAANA  130 (146)
T ss_pred             cccchHHHHHHHHcCCCCCCEEEEECCCC----cEEeeCh
Confidence            33334457999999999999999999999    6777754

RdCVF was isolated and identified as a factor that supports cone survival in retinal cultures. Cone photoreceptor loss is responsible for the visual handicap resulting from the inherited disease, retinitis pigmentosa. RdCVF shows 33% similarity to TRX but does not exhibit any detectable thiol oxidoreductase activity.

>PF13098 Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_A 2L57_A 1EEJ_B 1TJD_A 1JZD_B 1JZO_A 1G0T_B 3GV1_A 1V58_A 2H0H_A

Probab=96.18  E-value=0.0065  Score=39.06  Aligned_cols=33  Identities=24%  Similarity=0.556  Sum_probs=23.8

Q ss_pred             hhHHHHhCCccCceEEEEecCCCCCeeEEEeeecC
Q 034345           19 QDVARDFGAACTPEFFLFKKDGRRPFQLVYHGQFD   53 (97)
Q Consensus        19 q~va~a~gA~~TPe~fvld~~g~~~~~l~Y~G~ID   53 (97)
                      .++++.||...||+++++|++|+  ..-++.|.++
T Consensus        72 ~~l~~~~~v~gtPt~~~~d~~G~--~v~~~~G~~~  104 (112)
T PF13098_consen   72 KELAQRYGVNGTPTIVFLDKDGK--IVYRIPGYLS  104 (112)
T ss_dssp             HHHHHHTT--SSSEEEECTTTSC--EEEEEESS--
T ss_pred             HHHHHHcCCCccCEEEEEcCCCC--EEEEecCCCC
Confidence            46999999999999999999995  3335677653

...

>cd02975 PfPDO_like_N Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)-like family, N-terminal TRX-fold subdomain; composed of proteins with similarity to PfPDO, a redox active thermostable protein believed to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI), which are both involved in oxidative protein folding

Probab=96.16  E-value=0.024  Score=37.59  Aligned_cols=57  Identities=19%  Similarity=0.308  Sum_probs=40.9

Q ss_pred             cceeEE-EeChhhHHHHhCCccCceEEEEecCCCCCeeEEEeeecCCCCCCCCCCCcHHHHHHHHHHHHc
Q 034345            9 LMWLIT-LFQSQDVARDFGAACTPEFFLFKKDGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECVLS   77 (97)
Q Consensus         9 ~~fpvL-~D~~q~va~a~gA~~TPe~fvld~~g~~~~~l~Y~G~IDd~~~~~~~~~t~~~L~~Ai~alLa   77 (97)
                      +.|-.+ .|+..+++++||...+|++++++..+.. -.++|+|...           .+++..-|++++.
T Consensus        54 i~~~~vd~d~~~~l~~~~~v~~vPt~~i~~~g~~~-~~~~~~G~~~-----------~~el~~~i~~i~~  111 (113)
T cd02975          54 LKLEIYDFDEDKEKAEKYGVERVPTTIFLQDGGKD-GGIRYYGLPA-----------GYEFASLIEDIVR  111 (113)
T ss_pred             eEEEEEeCCcCHHHHHHcCCCcCCEEEEEeCCeec-ceEEEEecCc-----------hHHHHHHHHHHHh
Confidence            344433 6788899999999999999999875432 1568888643           3477777877763

PfPDO contains two redox active CXXC motifs in two contiguous TRX-fold subdomains. The active site in the N-terminal TRX-fold subdomain is required for isomerase but not for reductase activity of PfPDO. The exclusive presence of PfPDO-like proteins in extremophiles may suggest that they have a special role in adaptation to extreme conditions.

>cd02964 TryX_like_family Tryparedoxin (TryX)-like family; composed of TryX and related proteins including nucleoredoxin (NRX), rod-derived cone viability factor (RdCVF) and the nematode homolog described as a 16-kD class of TRX

Probab=95.65  E-value=0.005  Score=41.31  Aligned_cols=33  Identities=21%  Similarity=0.424  Sum_probs=27.7

Q ss_pred             hhhHHHHhCCccCceEEEEecCCCCCeeEEEeeecCC
Q 034345           18 SQDVARDFGAACTPEFFLFKKDGRRPFQLVYHGQFDD   54 (97)
Q Consensus        18 ~q~va~a~gA~~TPe~fvld~~g~~~~~l~Y~G~IDd   54 (97)
                      .+.+++.||...+|+.+|||++|    +++++...+.
T Consensus        88 ~~~~~~~~~v~~iPt~~lid~~G----~iv~~~~~~~  120 (132)
T cd02964          88 RELLEKQFKVEGIPTLVVLKPDG----DVVTTNARDE  120 (132)
T ss_pred             HHHHHHHcCCCCCCEEEEECCCC----CEEchhHHHH
Confidence            46788999999999999999999    6777766543

Most members of this family, except RdCVF, are protein disulfide oxidoreductases containing an active site CXXC motif, similar to TRX.

>TIGR00411 redox_disulf_1 small redox-active disulfide protein 1

Probab=95.51  E-value=0.023  Score=34.34  Aligned_cols=43  Identities=16%  Similarity=0.377  Sum_probs=31.7

Q ss_pred             EeChhhHHHHhCCccCceEEEEecCCCCCeeEEEeeecCCCCCCCCCCCcHHHHHHHHHHH
Q 034345           15 LFQSQDVARDFGAACTPEFFLFKKDGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECV   75 (97)
Q Consensus        15 ~D~~q~va~a~gA~~TPe~fvld~~g~~~~~l~Y~G~IDd~~~~~~~~~t~~~L~~Ai~al   75 (97)
                      .|+..+.++.||...+|.+++   +|    +.++.|..+           ...++++|+.+
T Consensus        39 ~~~~~~~~~~~~v~~vPt~~~---~g----~~~~~G~~~-----------~~~l~~~l~~~   81 (82)
T TIGR00411        39 VMENPQKAMEYGIMAVPAIVI---NG----DVEFIGAPT-----------KEELVEAIKKR   81 (82)
T ss_pred             CccCHHHHHHcCCccCCEEEE---CC----EEEEecCCC-----------HHHHHHHHHhh
Confidence            357889999999999999886   66    568888532           23577777654

This protein is homologous to a family of proteins that includes thioredoxins, glutaredoxins, protein-disulfide isomerases, and others, some of which have several such domains. The sequence of this protein at the redox-active disufide site, CPYC, matches glutaredoxins rather than thioredoxins, although its overall sequence seems closer to thioredoxins. It is suggested to be a ribonucleotide-reducing system component distinct from thioredoxin or glutaredoxin.

>PF13905 Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_A 1OC8_B 1O6J_A 1OC9_B 1O81_A 3FKF_A 1O85_A 1O7U_A 1O8W_A

Probab=95.50  E-value=0.0058  Score=38.27  Aligned_cols=25  Identities=20%  Similarity=0.515  Sum_probs=21.9

Q ss_pred             eChhhHHHHhCCccCceEEEEecCC
Q 034345           16 FQSQDVARDFGAACTPEFFLFKKDG   40 (97)
Q Consensus        16 D~~q~va~a~gA~~TPe~fvld~~g   40 (97)
                      +..+.+.+.|+...+|..+|||++|
T Consensus        69 ~~~~~l~~~~~i~~iP~~~lld~~G   93 (95)
T PF13905_consen   69 DNNSELLKKYGINGIPTLVLLDPDG   93 (95)
T ss_dssp             HHHHHHHHHTT-TSSSEEEEEETTS
T ss_pred             chHHHHHHHCCCCcCCEEEEECCCC
Confidence            4467899999999999999999999

...

>TIGR01126 pdi_dom protein disulfide-isomerase domain

Probab=95.28  E-value=0.028  Score=34.92  Aligned_cols=35  Identities=26%  Similarity=0.429  Sum_probs=29.3

Q ss_pred             EeChhhHHHHhCCccCceEEEEecCCCCCeeEEEeeec
Q 034345           15 LFQSQDVARDFGAACTPEFFLFKKDGRRPFQLVYHGQF   52 (97)
Q Consensus        15 ~D~~q~va~a~gA~~TPe~fvld~~g~~~~~l~Y~G~I   52 (97)
                      .|....+++.||...+|++|++++++.   ...|.|.+
T Consensus        55 ~~~~~~~~~~~~i~~~P~~~~~~~~~~---~~~~~g~~   89 (102)
T TIGR01126        55 ATAEKDLASRFGVSGFPTIKFFPKGKK---PVDYEGGR   89 (102)
T ss_pred             ccchHHHHHhCCCCcCCEEEEecCCCc---ceeecCCC
Confidence            456788999999999999999999984   57788853

This model describes a domain of eukaryotic protein disulfide isomerases, generally found in two copies. The high cutoff for total score reflects the expectation of finding both copies. The domain is similar to thioredoxin but the redox-active disulfide region motif is APWCGHCK.

>cd03013 PRX5_like Peroxiredoxin (PRX) family, PRX5-like subfamily; members are similar to the human protein, PRX5, a homodimeric TRX peroxidase, widely expressed in tissues and found cellularly in mitochondria, peroxisomes and the cytosol

Probab=95.21  E-value=0.045  Score=38.27  Aligned_cols=42  Identities=12%  Similarity=0.093  Sum_probs=33.6

Q ss_pred             cceeEEEeChhhHHHHhCCcc-----------CceEEEEecCCCCCeeEEEeeecCCC
Q 034345            9 LMWLITLFQSQDVARDFGAAC-----------TPEFFLFKKDGRRPFQLVYHGQFDDS   55 (97)
Q Consensus         9 ~~fpvL~D~~q~va~a~gA~~-----------TPe~fvld~~g~~~~~l~Y~G~IDd~   55 (97)
                      .+||+|-|.+.+++++||...           ..-+|||| +|    +++|.-.-++.
T Consensus        90 ~~f~lLsD~~~~~~~~ygv~~~~~~~~~~~~~~R~~fiId-~g----~I~~~~~~~~~  142 (155)
T cd03013          90 DKIRFLADGNGEFTKALGLTLDLSAAGGGIRSKRYALIVD-DG----KVKYLFVEEDP  142 (155)
T ss_pred             CcEEEEECCCHHHHHHcCCCccccccCCcceeeeEEEEEC-CC----EEEEEEEecCC
Confidence            389999999999999999742           34569999 67    78888765554

The cellular location of PRX5 suggests that it may have an important antioxidant role in organelles that are major sources of reactive oxygen species (ROS), as well as a role in the control of signal transduction. PRX5 has been shown to reduce hydrogen peroxide, alkyl hydroperoxides and peroxynitrite. As with all other PRXs, the N-terminal peroxidatic cysteine of PRX5 is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Human PRX5 is able to resolve this intermediate by forming an intramolecular disulfide bond with its C-terminal cysteine (the resolving cysteine), which can then be reduced by TRX, just like an atypical 2-cys PRX. This resolving cysteine, however, is not conserved in other members of the subfamily. In such cases

>PF09695 YtfJ_HI0045: Bacterial protein of unknown function (YtfJ_HI0045); InterPro: IPR006513 These are sequences from gammaproteobacteria that are related to the Escherichia coli protein, YtfJ

Probab=95.15  E-value=0.036  Score=40.30  Aligned_cols=54  Identities=17%  Similarity=0.342  Sum_probs=40.9

Q ss_pred             hhccee-EEEeChhhHHHHhC-CccCceEEEEecCCCCCeeEEEeeecCCCCCCCCCCCcHHHHHHHHH
Q 034345            7 LFLMWL-ITLFQSQDVARDFG-AACTPEFFLFKKDGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIE   73 (97)
Q Consensus         7 ~~~~fp-vL~D~~q~va~a~g-A~~TPe~fvld~~g~~~~~l~Y~G~IDd~~~~~~~~~t~~~L~~Ai~   73 (97)
                      +.+|+. +++|+++.+.++++ ..+.=.++|+|++|+  ++-...|++.+.           ++++.|+
T Consensus       100 k~~p~s~~vlD~~G~~~~aW~L~~~~SaiiVlDK~G~--V~F~k~G~Ls~~-----------Ev~qVi~  155 (160)
T PF09695_consen  100 KEFPWSQFVLDSNGVVRKAWQLQEESSAIIVLDKQGK--VQFVKEGALSPA-----------EVQQVIA  155 (160)
T ss_pred             hhCCCcEEEEcCCCceeccccCCCCCceEEEEcCCcc--EEEEECCCCCHH-----------HHHHHHH
Confidence            457888 78999999999999 558888999999995  444455665444           6777664

>PRK09381 trxA thioredoxin; Provisional

Probab=95.10  E-value=0.053  Score=34.78  Aligned_cols=51  Identities=20%  Similarity=0.381  Sum_probs=34.7

Q ss_pred             eEEEeChhhHHHHhCCccCceEEEEecCCCCCeeEEEeeecCCCCCCCCCCCcHHHHHHHHHHHH
Q 034345           12 LITLFQSQDVARDFGAACTPEFFLFKKDGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECVL   76 (97)
Q Consensus        12 pvL~D~~q~va~a~gA~~TPe~fvld~~g~~~~~l~Y~G~IDd~~~~~~~~~t~~~L~~Ai~alL   76 (97)
                      .+=.|..+.+++.|+...+|+++++ ++|+  ...++.|..+           ...|+..|+..|
T Consensus        58 ~vd~~~~~~~~~~~~v~~~Pt~~~~-~~G~--~~~~~~G~~~-----------~~~l~~~i~~~~  108 (109)
T PRK09381         58 KLNIDQNPGTAPKYGIRGIPTLLLF-KNGE--VAATKVGALS-----------KGQLKEFLDANL  108 (109)
T ss_pred             EEECCCChhHHHhCCCCcCCEEEEE-eCCe--EEEEecCCCC-----------HHHHHHHHHHhc
Confidence            3556777899999999999999999 4673  2334445432           235777776654

>cd02953 DsbDgamma DsbD gamma family; DsbD gamma is the C-terminal periplasmic domain of the bacterial protein DsbD

Probab=94.87  E-value=0.023  Score=36.29  Aligned_cols=33  Identities=15%  Similarity=0.321  Sum_probs=26.4

Q ss_pred             hhhHHHHhCCccCceEEEEec-CCCCCeeEEEeeec
Q 034345           18 SQDVARDFGAACTPEFFLFKK-DGRRPFQLVYHGQF   52 (97)
Q Consensus        18 ~q~va~a~gA~~TPe~fvld~-~g~~~~~l~Y~G~I   52 (97)
                      ..+++++||...+|+++++++ +|+  ...++.|.+
T Consensus        61 ~~~~~~~~~i~~~Pti~~~~~~~g~--~~~~~~G~~   94 (104)
T cd02953          61 ITALLKRFGVFGPPTYLFYGPGGEP--EPLRLPGFL   94 (104)
T ss_pred             HHHHHHHcCCCCCCEEEEECCCCCC--CCccccccc
Confidence            468999999999999999998 664  355666654

It contains a CXXC motif in a TRX fold and shuttles the reducing potential from the membrane domain (DsbD beta) to the N-terminal periplasmic domain (DsbD alpha). DsbD beta, a transmembrane domain comprising of eight helices, acquires its reducing potential from the cytoplasmic thioredoxin. DsbD alpha transfers the acquired reducing potential from DsbD gamma to target proteins such as the periplasmic protein disulphide isomerases, DsbC and DsbG. This flow of reducing potential from the cytoplasm through DsbD allows DsbC and DsbG to act as isomerases in the oxidizing environment of the bacterial periplasm. DsbD also transfers reducing potential from the cytoplasm to specific reductases in the periplasm which are involved in the maturation of cytochromes.

>cd02973 TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-like family; composed of archaeal and bacterial proteins that show similarity to both TRX and GRX, including the C-terminal TRX-fold subdomain of Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)

Probab=94.73  E-value=0.075  Score=31.31  Aligned_cols=37  Identities=16%  Similarity=0.401  Sum_probs=28.1

Q ss_pred             hcceeEE-EeChhhHHHHhCCccCceEEEEecCCCCCeeEEEeee
Q 034345            8 FLMWLIT-LFQSQDVARDFGAACTPEFFLFKKDGRRPFQLVYHGQ   51 (97)
Q Consensus         8 ~~~fpvL-~D~~q~va~a~gA~~TPe~fvld~~g~~~~~l~Y~G~   51 (97)
                      .+.|-.+ .|+.+++++.||...+|.+++   +|    +++|.|+
T Consensus        30 ~i~~~~id~~~~~~l~~~~~i~~vPti~i---~~----~~~~~g~   67 (67)
T cd02973          30 NISAEMIDAAEFPDLADEYGVMSVPAIVI---NG----KVEFVGR   67 (67)
T ss_pred             ceEEEEEEcccCHhHHHHcCCcccCEEEE---CC----EEEEecC
Confidence            4555444 466788999999999999876   45    6889885

All members contain a redox-active CXXC motif and may function as PDOs. The archaeal proteins Mj0307 and Mt807 show structures more similar to GRX, but activities more similar to TRX. Some members of the family are similar to PfPDO in that they contain a second CXXC motif located in a second TRX-fold subdomain at the N-terminus; the superimposable N- and C-terminal TRX subdomains form a compact structure. PfPDO is postulated to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI). The C-terminal CXXC motif of PfPDO is required for its oxidase, reductase and isomerase activities. Also included in the family is the C-terminal TRX-fold subdomain of the N-terminal domain (NTD) of bacteri

>TIGR02740 TraF-like TraF-like protein

Probab=94.65  E-value=0.065  Score=41.12  Aligned_cols=48  Identities=17%  Similarity=0.221  Sum_probs=32.6

Q ss_pred             hhhHHHHhCCccCceEEEEecCCCCCeeEEEeeecCCCCCCCCCCCcHHHHHHHHHHHHc
Q 034345           18 SQDVARDFGAACTPEFFLFKKDGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECVLS   77 (97)
Q Consensus        18 ~q~va~a~gA~~TPe~fvld~~g~~~~~l~Y~G~IDd~~~~~~~~~t~~~L~~Ai~alLa   77 (97)
                      ++.+++.||...+|+.||+|++|+. +.....|.++.           ..|.+-|..+..
T Consensus       218 d~~la~~~gV~~vPtl~Lv~~~~~~-v~~v~~G~~s~-----------~eL~~~i~~~a~  265 (271)
T TIGR02740       218 DAGQAQQLKIRTVPAVFLADPDPNQ-FTPIGFGVMSA-----------DELVDRILLAAH  265 (271)
T ss_pred             CHHHHHHcCCCcCCeEEEEECCCCE-EEEEEeCCCCH-----------HHHHHHHHHHhc
Confidence            3568999999999999999996531 23345565533           367776665544

This protein is related to the F-type conjugation system pilus assembly proteins TraF (TIGR02739)and TrbB (TIGR02738) both of which exhibit a thioredoxin fold. The protein represented by this model has the same length and architecture as TraF, but lacks the CXXC-motif found in TrbB and believed to be responsible for the disulfide isomerase activity of that protein.

>cd02956 ybbN ybbN protein family; ybbN is a hypothetical protein containing a redox-inactive TRX-like domain

Probab=94.60  E-value=0.046  Score=34.15  Aligned_cols=37  Identities=22%  Similarity=0.429  Sum_probs=28.9

Q ss_pred             EEEeChhhHHHHhCCccCceEEEEecCCCCCeeEEEeeec
Q 034345           13 ITLFQSQDVARDFGAACTPEFFLFKKDGRRPFQLVYHGQF   52 (97)
Q Consensus        13 vL~D~~q~va~a~gA~~TPe~fvld~~g~~~~~l~Y~G~I   52 (97)
                      +=.|...++++.|+...+|+.++++ +|+  ..-+|.|..
T Consensus        50 vd~~~~~~l~~~~~i~~~Pt~~~~~-~g~--~~~~~~g~~   86 (96)
T cd02956          50 VNCDAQPQIAQQFGVQALPTVYLFA-AGQ--PVDGFQGAQ   86 (96)
T ss_pred             EeccCCHHHHHHcCCCCCCEEEEEe-CCE--EeeeecCCC
Confidence            3367888999999999999999997 664  244677753

Its gene has been sequenced from several gammaproteobacteria and actinobacteria.

>COG2143 Thioredoxin-related protein [Posttranslational modification, protein turnover, chaperones]

Probab=94.43  E-value=0.053  Score=39.92  Aligned_cols=24  Identities=33%  Similarity=0.809  Sum_probs=22.4

Q ss_pred             hhhHHHHhCCccCceEEEEecCCC
Q 034345           18 SQDVARDFGAACTPEFFLFKKDGR   41 (97)
Q Consensus        18 ~q~va~a~gA~~TPe~fvld~~g~   41 (97)
                      +.++|+.|+++.||+++.+|++|+
T Consensus       104 ~~ELa~kf~vrstPtfvFfdk~Gk  127 (182)
T COG2143         104 TEELAQKFAVRSTPTFVFFDKTGK  127 (182)
T ss_pred             HHHHHHHhccccCceEEEEcCCCC
Confidence            458999999999999999999997

>cd02963 TRX_DnaJ TRX domain, DnaJ domain containing protein family; composed of uncharacterized proteins of about 500-800 amino acids, containing an N-terminal DnaJ domain followed by one redox active TRX domain

Probab=93.82  E-value=0.1  Score=34.24  Aligned_cols=26  Identities=23%  Similarity=0.378  Sum_probs=22.0

Q ss_pred             EeChhhHHHHhCCccCceEEEEecCCC
Q 034345           15 LFQSQDVARDFGAACTPEFFLFKKDGR   41 (97)
Q Consensus        15 ~D~~q~va~a~gA~~TPe~fvld~~g~   41 (97)
                      .|..+.++++||...+|++++++ +|+
T Consensus        65 ~d~~~~l~~~~~V~~~Pt~~i~~-~g~   90 (111)
T cd02963          65 AGHERRLARKLGAHSVPAIVGII-NGQ   90 (111)
T ss_pred             ccccHHHHHHcCCccCCEEEEEE-CCE
Confidence            35677999999999999999996 663

DnaJ is a member of the 40 kDa heat-shock protein (Hsp40) family of molecular chaperones, which regulate the activity of Hsp70s. TRX is involved in the redox regulation of many protein substrates through the reduction of disulfide bonds. TRX has been implicated to catalyse the reduction of Hsp33, a chaperone holdase that binds to unfolded protein intermediates. The presence of DnaJ and TRX domains in members of this family suggests that they could be involved in a redox-regulated chaperone network.

>TIGR01068 thioredoxin thioredoxin

Probab=93.73  E-value=0.15  Score=31.35  Aligned_cols=33  Identities=27%  Similarity=0.467  Sum_probs=24.6

Q ss_pred             eChhhHHHHhCCccCceEEEEecCCCCCeeEEEeee
Q 034345           16 FQSQDVARDFGAACTPEFFLFKKDGRRPFQLVYHGQ   51 (97)
Q Consensus        16 D~~q~va~a~gA~~TPe~fvld~~g~~~~~l~Y~G~   51 (97)
                      |....+++.||...+|+.++++ +|.  ...++.|.
T Consensus        55 ~~~~~~~~~~~v~~~P~~~~~~-~g~--~~~~~~g~   87 (101)
T TIGR01068        55 DENPDIAAKYGIRSIPTLLLFK-NGK--EVDRSVGA   87 (101)
T ss_pred             CCCHHHHHHcCCCcCCEEEEEe-CCc--EeeeecCC
Confidence            5667889999999999999995 553  23445554

Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by this model.

>cd03005 PDI_a_ERp46 PDIa family, endoplasmic reticulum protein 46 (ERp46) subfamily; ERp46 is an ER-resident protein containing three redox active TRX domains

Probab=93.72  E-value=0.11  Score=32.45  Aligned_cols=35  Identities=31%  Similarity=0.518  Sum_probs=27.7

Q ss_pred             eChhhHHHHhCCccCceEEEEecCCCCCeeEEEeeecC
Q 034345           16 FQSQDVARDFGAACTPEFFLFKKDGRRPFQLVYHGQFD   53 (97)
Q Consensus        16 D~~q~va~a~gA~~TPe~fvld~~g~~~~~l~Y~G~ID   53 (97)
                      |....+++.|+...+|+++++. +|.  ...+|.|..+
T Consensus        60 ~~~~~~~~~~~v~~~Pt~~~~~-~g~--~~~~~~G~~~   94 (102)
T cd03005          60 TQHRELCSEFQVRGYPTLLLFK-DGE--KVDKYKGTRD   94 (102)
T ss_pred             CCChhhHhhcCCCcCCEEEEEe-CCC--eeeEeeCCCC
Confidence            5567899999999999999995 554  3567999754

Yeast complementation studies show that ERp46 can substitute for protein disulfide isomerase (PDI) function in vivo. It has been detected in many tissues, however, transcript and protein levels do not correlate in all tissues, suggesting regulation at a posttranscriptional level. An identical protein, named endoPDI, has been identified as an endothelial PDI that is highly expressed in the endothelium of tumors and hypoxic lesions. It has a protective effect on cells exposed to hypoxia.

>cd03065 PDI_b_Calsequestrin_N PDIb family, Calsequestrin subfamily, N-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle

Probab=93.61  E-value=0.14  Score=34.99  Aligned_cols=47  Identities=19%  Similarity=0.374  Sum_probs=36.5

Q ss_pred             EeChhhHHHHhCCccCceEEEEecCCCCCeeEEEeeecCCCCCCCCCCCcHHHHHHHHHHHH
Q 034345           15 LFQSQDVARDFGAACTPEFFLFKKDGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECVL   76 (97)
Q Consensus        15 ~D~~q~va~a~gA~~TPe~fvld~~g~~~~~l~Y~G~IDd~~~~~~~~~t~~~L~~Ai~alL   76 (97)
                      .|+..++|+.||....|+++++. +|+   .+.|.|..+           ...|...|+.|+
T Consensus        73 ~d~~~~La~~~~I~~iPTl~lfk-~G~---~v~~~G~~~-----------~~~l~~~l~~~~  119 (120)
T cd03065          73 SKKDAKVAKKLGLDEEDSIYVFK-DDE---VIEYDGEFA-----------ADTLVEFLLDLI  119 (120)
T ss_pred             CCCCHHHHHHcCCccccEEEEEE-CCE---EEEeeCCCC-----------HHHHHHHHHHHh
Confidence            57889999999999999999996 664   567888642           336777777664

It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca2

>PRK10996 thioredoxin 2; Provisional

Probab=92.90  E-value=0.18  Score=34.54  Aligned_cols=47  Identities=13%  Similarity=0.251  Sum_probs=32.1

Q ss_pred             EeChhhHHHHhCCccCceEEEEecCCCCCeeEEEeeecCCCCCCCCCCCcHHHHHHHHHHH
Q 034345           15 LFQSQDVARDFGAACTPEFFLFKKDGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECV   75 (97)
Q Consensus        15 ~D~~q~va~a~gA~~TPe~fvld~~g~~~~~l~Y~G~IDd~~~~~~~~~t~~~L~~Ai~al   75 (97)
                      .|+..++++.||...+|++++++ +|+  ..-++.|..+           ...+++.|+.+
T Consensus        92 ~~~~~~l~~~~~V~~~Ptlii~~-~G~--~v~~~~G~~~-----------~e~l~~~l~~~  138 (139)
T PRK10996         92 TEAERELSARFRIRSIPTIMIFK-NGQ--VVDMLNGAVP-----------KAPFDSWLNEA  138 (139)
T ss_pred             CCCCHHHHHhcCCCccCEEEEEE-CCE--EEEEEcCCCC-----------HHHHHHHHHHh
Confidence            56778999999999999988885 673  2334455422           33566666654

>cd02961 PDI_a_family Protein Disulfide Isomerase (PDIa) family, redox active TRX domains; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants

Probab=92.83  E-value=0.11  Score=31.46  Aligned_cols=36  Identities=19%  Similarity=0.385  Sum_probs=28.7

Q ss_pred             EeChhhHHHHhCCccCceEEEEecCCCCCeeEEEeeec
Q 034345           15 LFQSQDVARDFGAACTPEFFLFKKDGRRPFQLVYHGQF   52 (97)
Q Consensus        15 ~D~~q~va~a~gA~~TPe~fvld~~g~~~~~l~Y~G~I   52 (97)
                      .|....+++.||...+|+.+++++++.  ...+|.|..
T Consensus        57 ~~~~~~~~~~~~i~~~Pt~~~~~~~~~--~~~~~~g~~   92 (101)
T cd02961          57 CTANNDLCSEYGVRGYPTIKLFPNGSK--EPVKYEGPR   92 (101)
T ss_pred             ccchHHHHHhCCCCCCCEEEEEcCCCc--ccccCCCCc
Confidence            355579999999999999999998853  267777763

Members of this family include PDI and PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5, PDIR, ERp46 and the transmembrane PDIs. PDI, ERp57, ERp72, P5, PDIR and ERp46 are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins usually contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and may also contain one or more redox inactive TRX-like (b) domains. Only one a domain is required for the oxidase function but multiple copies

>cd03002 PDI_a_MPD1_like PDI family, MPD1-like subfamily; composed of eukaryotic proteins similar to Saccharomyces cerevisiae MPD1 protein, which contains a single redox active TRX domain located at the N-terminus, and an ER retention signal at the C-terminus indicative of an ER-resident protein

Probab=92.74  E-value=0.13  Score=32.62  Aligned_cols=35  Identities=14%  Similarity=0.336  Sum_probs=26.0

Q ss_pred             hhhHHHHhCCccCceEEEEecCCC--CCeeEEEeeec
Q 034345           18 SQDVARDFGAACTPEFFLFKKDGR--RPFQLVYHGQF   52 (97)
Q Consensus        18 ~q~va~a~gA~~TPe~fvld~~g~--~~~~l~Y~G~I   52 (97)
                      ..++++.|+...+|+++++++.+.  +.....|.|..
T Consensus        63 ~~~~~~~~~i~~~Pt~~~~~~~~~~~~~~~~~~~G~~   99 (109)
T cd03002          63 NKPLCGKYGVQGFPTLKVFRPPKKASKHAVEDYNGER   99 (109)
T ss_pred             cHHHHHHcCCCcCCEEEEEeCCCcccccccccccCcc
Confidence            567999999999999999998861  00145666653

MPD1 has been shown to suppress the maturation defect of carboxypeptidase Y caused by deletion of the yeast PDI1 gene. Other characterized members of this subfamily include the Aspergillus niger prpA protein and Giardia PDI-1. PrpA is non-essential to strain viability, however, its transcript level is induced by heterologous protein expression suggesting a possible role in oxidative protein folding during high protein production. Giardia PDI-1 has the ability to refold scrambled RNase and exhibits transglutaminase activity.

>PF00085 Thioredoxin: Thioredoxin; InterPro: IPR013766 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms

Probab=92.41  E-value=0.27  Score=30.28  Aligned_cols=45  Identities=18%  Similarity=0.383  Sum_probs=32.8

Q ss_pred             eChhhHHHHhCCccCceEEEEecCCCCCeeEEEeeecCCCCCCCCCCCcHHHHHHHHHH
Q 034345           16 FQSQDVARDFGAACTPEFFLFKKDGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIEC   74 (97)
Q Consensus        16 D~~q~va~a~gA~~TPe~fvld~~g~~~~~l~Y~G~IDd~~~~~~~~~t~~~L~~Ai~a   74 (97)
                      |+...+++.|+...+|+++++.....   .-+|.|..+           ...|.+.|+.
T Consensus        58 ~~~~~l~~~~~v~~~Pt~~~~~~g~~---~~~~~g~~~-----------~~~l~~~i~~  102 (103)
T PF00085_consen   58 DENKELCKKYGVKSVPTIIFFKNGKE---VKRYNGPRN-----------AESLIEFIEK  102 (103)
T ss_dssp             TTSHHHHHHTTCSSSSEEEEEETTEE---EEEEESSSS-----------HHHHHHHHHH
T ss_pred             hccchhhhccCCCCCCEEEEEECCcE---EEEEECCCC-----------HHHHHHHHHc
Confidence            44567999999999999999977662   558888632           3366666653

Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of two cysteine thiol groups to a disulphide, accompanied by the transfer of two electrons and two protons. The net result is the covalent interconversion of a disulphide and a dithiol. In the NADPH-dependent protein disulphide reduction, thioredoxin reductase (TR) catalyses the reduction of oxidised thioredoxin (trx) by NADPH using FAD and its redox-active disulphide; reduced thioredoxin then directly reduces the disulphide in the substrate protein []. Thioredoxin is present in prokaryotes and eukaryotes and the sequence around the redox-active disulphide bond is well conserved. All thioredoxins contain a cis-proline located in a loop preceding beta-strand 4, which makes contact with the active site cysteines, and is important for stability and function []. Thioredoxin belongs to a structural family that includes glutaredoxin, glutathione peroxidase, bacterial protein disulphide isomerase DsbA, and the N-terminal domain of glutathione transferase []. Thioredoxins have a beta-alpha unit preceding the motif common to all these proteins. A number of eukaryotic proteins contain domains evolutionary related to thioredoxin, most of them are protein disulphide isomerases (PDI). PDI (5.3.4.1 from EC) [, , ] is an endoplasmic reticulum multi-functional enzyme that catalyses the formation and rearrangement of disulphide bonds during protein folding []. All PDI contains two or three (ERp72) copies of the thioredoxin domain, each of which contributes to disulphide isomerase activity, but which are functionally non-equivalent []. Moreover, PDI exhibits chaperone-like activity towards proteins that contain no disulphide bonds, i.e. behaving independently of its disulphide isomerase activity []. The various forms of PDI which are currently known are: PDI major isozyme; a multifunctional protein that also function as the beta subunit of prolyl 4-hydroxylase (1.14.11.2 from EC), as a component of oligosaccharyl transferase (2.4.1.119 from EC), as thyroxine deiodinase (3.8.1.4 from EC), as glutathione-insulin transhydrogenase (1.8.4.2 from EC) and as a thyroid hormone-binding protein ERp60 (ER-60; 58 Kd microsomal protein). ERp60 was originally thought to be a phosphoinositide-specific phospholipase C isozyme and later to be a protease. ERp72. ERp5. Bacterial proteins that act as thiol:disulphide interchange proteins that allows disulphide bond formation in some periplasmic proteins also contain a thioredoxin domain. These proteins include: Escherichia coli DsbA (or PrfA) and its orthologs in Vibrio cholerae (TtcpG) and Haemophilus influenzae (Por). E. coli DsbC (or XpRA) and its orthologues in Erwinia chrysanthemi and H. influenzae. E. coli DsbD (or DipZ) and its H. influenzae orthologue. E. coli DsbE (or CcmG) and orthologues in H. influenzae. Rhodobacter capsulatus (Rhodopseudomonas capsulata) (HelX), Rhiziobiacae (CycY and TlpA). This entry represents the thioredoxin domain.; GO: 0045454 cell redox homeostasis; PDB: 3ED3_B 1EP7_A 1EP8_B 1TOF_A 2OE3_B 2OE1_B 2OE0_B 1V98_A 3H79_A 3CXG_A ....

>KOG0855 consensus Alkyl hydroperoxide reductase, thiol specific antioxidant and related enzymes [Posttranslational modification, protein turnover, chaperones]

Probab=92.29  E-value=0.54  Score=35.15  Aligned_cols=33  Identities=27%  Similarity=0.510  Sum_probs=30.0

Q ss_pred             hcceeEEEeChhhHHHHhCCccCc-------eEEEEecCC
Q 034345            8 FLMWLITLFQSQDVARDFGAACTP-------EFFLFKKDG   40 (97)
Q Consensus         8 ~~~fpvL~D~~q~va~a~gA~~TP-------e~fvld~~g   40 (97)
                      .+||-.|-|+.+++-+.+||..+|       ..||||+.|
T Consensus       146 nlPYhLLSDpk~e~ik~lGa~k~p~gg~~~Rsh~if~kg~  185 (211)
T KOG0855|consen  146 NLPYHLLSDPKNEVIKDLGAPKDPFGGLPGRSHYIFDKGG  185 (211)
T ss_pred             cCCeeeecCcchhHHHHhCCCCCCCCCcccceEEEEecCC
Confidence            577888999999999999999998       579999998

>cd02958 UAS UAS family; UAS is a domain of unknown function

Probab=92.08  E-value=0.45  Score=31.02  Aligned_cols=35  Identities=14%  Similarity=0.324  Sum_probs=26.5

Q ss_pred             ChhhHHHHhCCccCceEEEEec-CCCCCeeEEEeeecC
Q 034345           17 QSQDVARDFGAACTPEFFLFKK-DGRRPFQLVYHGQFD   53 (97)
Q Consensus        17 ~~q~va~a~gA~~TPe~fvld~-~g~~~~~l~Y~G~ID   53 (97)
                      +..++++.|+...+|.+++||+ +|+  ..-+..|.++
T Consensus        64 e~~~~~~~~~~~~~P~~~~i~~~~g~--~l~~~~G~~~   99 (114)
T cd02958          64 EGQRFLQSYKVDKYPHIAIIDPRTGE--VLKVWSGNIT   99 (114)
T ss_pred             cHHHHHHHhCccCCCeEEEEeCccCc--EeEEEcCCCC
Confidence            3458999999999999999999 774  3444456543

Most members of this family are uncharacterized proteins with similarity to FAS-associated factor 1 (FAF1) and ETEA because of the presence of a UAS domain N-terminal to a ubiquitin-associated UBX domain. FAF1 is a longer protein, compared to the other members of this family, having additional N-terminal domains, a ubiquitin-associated UBA domain and a nuclear targeting domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. ETEA is the protein product of a highly expressed gene in T-cells and eosinophils of atopic dermatitis patients. The presence of the ubiquitin-associated UBX domain in the proteins of this family suggests the possibility of their involvement in ubiquitination. Recently, FAF1 has been shown to interact with valosin-containing protein (VCP),

>PLN00410 U5 snRNP protein, DIM1 family; Provisional

Probab=91.88  E-value=0.61  Score=32.96  Aligned_cols=62  Identities=11%  Similarity=0.141  Sum_probs=43.7

Q ss_pred             EEEeChhhHHHHhCCccCceEEEEecCCCCCeeEEEeeecCCCCCCCCCCCcHHHHHHHHHHHHcC
Q 034345           13 ITLFQSQDVARDFGAACTPEFFLFKKDGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECVLSG   78 (97)
Q Consensus        13 vL~D~~q~va~a~gA~~TPe~fvld~~g~~~~~l~Y~G~IDd~~~~~~~~~t~~~L~~Ai~alLaG   78 (97)
                      |=+|+.+++|+.|+....|.+|.|=++|.   ....+|.-+++.- +....+...|.+.|+.++.|
T Consensus        61 VDVDe~~dla~~y~I~~~~t~~~ffk~g~---~~vd~~tG~~~k~-~~~~~~k~~l~~~i~~~~~~  122 (142)
T PLN00410         61 VDITEVPDFNTMYELYDPCTVMFFFRNKH---IMIDLGTGNNNKI-NWALKDKQEFIDIVETVYRG  122 (142)
T ss_pred             EECCCCHHHHHHcCccCCCcEEEEEECCe---EEEEEeccccccc-ccccCCHHHHHHHHHHHHHH
Confidence            33577779999999997777775556773   4888887766531 22234667888888887766

>cd02949 TRX_NTR TRX domain, novel NADPH thioredoxin reductase (NTR) family; composed of fusion proteins found only in oxygenic photosynthetic organisms containing both TRX and NTR domains

Probab=91.86  E-value=0.22  Score=31.48  Aligned_cols=33  Identities=27%  Similarity=0.387  Sum_probs=24.6

Q ss_pred             EeChhhHHHHhCCccCceEEEEecCCCCCeeEEEee
Q 034345           15 LFQSQDVARDFGAACTPEFFLFKKDGRRPFQLVYHG   50 (97)
Q Consensus        15 ~D~~q~va~a~gA~~TPe~fvld~~g~~~~~l~Y~G   50 (97)
                      .|+.+++++.||...+|+.++++ +|+  ..-++.|
T Consensus        53 ~d~~~~l~~~~~v~~vPt~~i~~-~g~--~v~~~~g   85 (97)
T cd02949          53 IDEDQEIAEAAGIMGTPTVQFFK-DKE--LVKEISG   85 (97)
T ss_pred             CCCCHHHHHHCCCeeccEEEEEE-CCe--EEEEEeC
Confidence            34577899999999999999996 563  2334444

The TRX domain functions as a protein disulfide reductase via the reversible oxidation of an active center dithiol present in a CXXC motif, while the NTR domain functions as a reductant to oxidized TRX. The fusion protein is bifunctional, showing both TRX and NTR activities, but it is not an independent NTR/TRX system. In plants, the protein is found exclusively in shoots and mature leaves and is localized in the chloroplast. It is involved in plant protection against oxidative stress.

>cd02994 PDI_a_TMX PDIa family, TMX subfamily; composed of proteins similar to the TRX-related human transmembrane protein, TMX

Probab=91.73  E-value=0.3  Score=30.68  Aligned_cols=33  Identities=24%  Similarity=0.367  Sum_probs=26.4

Q ss_pred             EeChhhHHHHhCCccCceEEEEecCCCCCeeEEEeee
Q 034345           15 LFQSQDVARDFGAACTPEFFLFKKDGRRPFQLVYHGQ   51 (97)
Q Consensus        15 ~D~~q~va~a~gA~~TPe~fvld~~g~~~~~l~Y~G~   51 (97)
                      .|+...+++.|+...+|+++++ ++|+   ..+|.|.
T Consensus        57 ~~~~~~~~~~~~i~~~Pt~~~~-~~g~---~~~~~G~   89 (101)
T cd02994          57 VTQEPGLSGRFFVTALPTIYHA-KDGV---FRRYQGP   89 (101)
T ss_pred             ccCCHhHHHHcCCcccCEEEEe-CCCC---EEEecCC
Confidence            4667789999999999999987 6774   4677774

TMX is a type I integral membrane protein; the N-terminal redox active TRX domain is present in the endoplasmic reticulum (ER) lumen while the C-terminus is oriented towards the cytoplasm. It is expressed in many cell types and its active site motif (CPAC) is unique. In vitro, TMX reduces interchain disulfides of insulin and renatures inactive RNase containing incorrect disulfide bonds. The C. elegans homolog, DPY-11, is expressed only in the hypodermis and resides in the cytoplasm. It is required for body and sensory organ morphogeneis. Another uncharacterized TRX-related transmembrane protein, human TMX4, is included in the alignment. The active site sequence of TMX4 is CPSC.

>cd02999 PDI_a_ERp44_like PDIa family, endoplasmic reticulum protein 44 (ERp44)-like subfamily; composed of uncharacterized PDI-like eukaryotic proteins containing only one redox active TRX (a) domain with a CXXS motif, similar to ERp44

Probab=91.26  E-value=0.59  Score=30.14  Aligned_cols=31  Identities=19%  Similarity=0.468  Sum_probs=26.6

Q ss_pred             hhhHHHHhCCccCceEEEEecCCCCCeeEEEeeec
Q 034345           18 SQDVARDFGAACTPEFFLFKKDGRRPFQLVYHGQF   52 (97)
Q Consensus        18 ~q~va~a~gA~~TPe~fvld~~g~~~~~l~Y~G~I   52 (97)
                      ...+++.||...+|+++++++. .   ..+|.|..
T Consensus        61 ~~~l~~~~~V~~~PT~~lf~~g-~---~~~~~G~~   91 (100)
T cd02999          61 KPSLLSRYGVVGFPTILLFNST-P---RVRYNGTR   91 (100)
T ss_pred             CHHHHHhcCCeecCEEEEEcCC-c---eeEecCCC
Confidence            4789999999999999999866 3   78999964

CXXS is still a redox active motif; however, the mixed disulfide formed with the substrate is more stable than those formed by CXXC motif proteins. PDI-related proteins are usually involved in the oxidative protein folding in the ER by acting as catalysts and folding assistants. ERp44 is involved in thiol-mediated retention in the ER.

>KOG0854 consensus Alkyl hydroperoxide reductase, thiol specific antioxidant and related enzymes [Posttranslational modification, protein turnover, chaperones]

Probab=90.91  E-value=1.3  Score=33.37  Aligned_cols=76  Identities=12%  Similarity=0.166  Sum_probs=48.2

Q ss_pred             cceeEEEeChhhHHHHhCCc------------cCceEEEEecCCCCCeeEEEeeecCCCCCCCCCCCcHHHHHHHHHHHH
Q 034345            9 LMWLITLFQSQDVARDFGAA------------CTPEFFLFKKDGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECVL   76 (97)
Q Consensus         9 ~~fpvL~D~~q~va~a~gA~------------~TPe~fvld~~g~~~~~l~Y~G~IDd~~~~~~~~~t~~~L~~Ai~alL   76 (97)
                      ++||++-|+..++|-.||-.            +.=.+||+|++-+  ++|.+.=.-.       ......++-.+|++|.
T Consensus        98 ~~yPIIaD~~rela~~l~MlD~~e~~~~~~~~T~Ravfvi~pdkK--irLs~lYP~t-------tGRN~dEiLRvidsLq  168 (224)
T KOG0854|consen   98 VPYPIIADPNRELAFLLNMLDPEEKKNIGDGKTVRAVFVIDPDKK--IRLSFLYPST-------TGRNFDEILRVIDSLQ  168 (224)
T ss_pred             CCCCeecCCchhhhhhhcccCHhHcCCCCCCceEEEEEEECCCce--EEEEEEcccc-------cCcCHHHHHHHHHHHh
Confidence            78999999999999888732            1336899999985  4554431110       1112446777888876


Q ss_pred             cCCCCCCCCCCceeecCCC
Q 034345           77 SGQPVSSNQKPSIKWHPQT   95 (97)
Q Consensus        77 aG~~v~~~~t~~IKw~~~~   95 (97)
                      -...=.+  ..++.|++++
T Consensus       169 lt~~k~V--aTP~nWkpg~  185 (224)
T KOG0854|consen  169 LTDKKGV--ATPVNWKPGD  185 (224)
T ss_pred             hhccccc--ccccccCCCC
Confidence            5544112  2238888775

>cd03001 PDI_a_P5 PDIa family, P5 subfamily; composed of eukaryotic proteins similar to human P5, a PDI-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain)

Probab=90.87  E-value=0.35  Score=30.12  Aligned_cols=36  Identities=19%  Similarity=0.234  Sum_probs=28.6

Q ss_pred             EeChhhHHHHhCCccCceEEEEecCCCCCeeEEEeeec
Q 034345           15 LFQSQDVARDFGAACTPEFFLFKKDGRRPFQLVYHGQF   52 (97)
Q Consensus        15 ~D~~q~va~a~gA~~TPe~fvld~~g~~~~~l~Y~G~I   52 (97)
                      .|+..++++.||...+|++++++++..  ....|.|..
T Consensus        58 ~~~~~~~~~~~~i~~~P~~~~~~~~~~--~~~~~~g~~   93 (103)
T cd03001          58 ADVHQSLAQQYGVRGFPTIKVFGAGKN--SPQDYQGGR   93 (103)
T ss_pred             CcchHHHHHHCCCCccCEEEEECCCCc--ceeecCCCC
Confidence            466778999999999999999987733  267788754

Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. Some members of this subfamily are P5-like proteins containing only one redox active TRX domain.

>PRK11509 hydrogenase-1 operon protein HyaE; Provisional

Probab=90.78  E-value=0.74  Score=32.25  Aligned_cols=54  Identities=19%  Similarity=0.260  Sum_probs=38.0

Q ss_pred             EEEeChhhHHHHhCCccCceEEEEecCCCCCeeEEEeeecCCCCCCCCCCCcHHHHHHHHHHHHcCCC
Q 034345           13 ITLFQSQDVARDFGAACTPEFFLFKKDGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECVLSGQP   80 (97)
Q Consensus        13 vL~D~~q~va~a~gA~~TPe~fvld~~g~~~~~l~Y~G~IDd~~~~~~~~~t~~~L~~Ai~alLaG~~   80 (97)
                      |=.|+..++|..||....|+.+++....   ..=+..|..+           ...+...|+++|+...
T Consensus        75 VDiD~~~~LA~~fgV~siPTLl~FkdGk---~v~~i~G~~~-----------k~~l~~~I~~~L~~~~  128 (132)
T PRK11509         75 ADLEQSEAIGDRFGVFRFPATLVFTGGN---YRGVLNGIHP-----------WAELINLMRGLVEPQQ  128 (132)
T ss_pred             EECCCCHHHHHHcCCccCCEEEEEECCE---EEEEEeCcCC-----------HHHHHHHHHHHhcCcC
Confidence            3457888999999999999888886543   2334445432           3367788988887643

>KOG0910 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]

Probab=90.74  E-value=0.34  Score=34.86  Aligned_cols=50  Identities=18%  Similarity=0.401  Sum_probs=39.7

Q ss_pred             EEEeChhhHHHHhCCccCceEEEEecCCCCCeeE-EEeeecCCCCCCCCCCCcHHHHHHHHHHHHc
Q 034345           13 ITLFQSQDVARDFGAACTPEFFLFKKDGRRPFQL-VYHGQFDDSRPSNNLPVTGRDIRLAIECVLS   77 (97)
Q Consensus        13 vL~D~~q~va~a~gA~~TPe~fvld~~g~~~~~l-~Y~G~IDd~~~~~~~~~t~~~L~~Ai~alLa   77 (97)
                      +=.|+..++|..|+.+-.|+++||+..-    ++ +..|+.|..           .|+..|+..|.
T Consensus        99 vdtD~~~ela~~Y~I~avPtvlvfknGe----~~d~~vG~~~~~-----------~l~~~i~k~l~  149 (150)
T KOG0910|consen   99 VDTDEHPELAEDYEISAVPTVLVFKNGE----KVDRFVGAVPKE-----------QLRSLIKKFLK  149 (150)
T ss_pred             EccccccchHhhcceeeeeEEEEEECCE----EeeeecccCCHH-----------HHHHHHHHHhc
Confidence            4468999999999999999999997665    44 777776655           68888877663

>PTZ00051 thioredoxin; Provisional

Probab=90.55  E-value=0.36  Score=30.01  Aligned_cols=34  Identities=24%  Similarity=0.279  Sum_probs=25.7

Q ss_pred             eChhhHHHHhCCccCceEEEEecCCCCCeeEEEeeec
Q 034345           16 FQSQDVARDFGAACTPEFFLFKKDGRRPFQLVYHGQF   52 (97)
Q Consensus        16 D~~q~va~a~gA~~TPe~fvld~~g~~~~~l~Y~G~I   52 (97)
                      |+.+.+++.|+...+|+++++ ++|+  ..-++.|..
T Consensus        58 ~~~~~~~~~~~v~~~Pt~~~~-~~g~--~~~~~~G~~   91 (98)
T PTZ00051         58 DELSEVAEKENITSMPTFKVF-KNGS--VVDTLLGAN   91 (98)
T ss_pred             cchHHHHHHCCCceeeEEEEE-eCCe--EEEEEeCCC
Confidence            445789999999999997666 6775  456788863

>cd02985 TRX_CDSP32 TRX family, chloroplastic drought-induced stress protein of 32 kD (CDSP32); CDSP32 is composed of two TRX domains, a C-terminal TRX domain which contains a redox active CXXC motif and an N-terminal TRX-like domain which contains an SXXS sequence instead of the redox active motif

Probab=90.46  E-value=0.47  Score=30.55  Aligned_cols=30  Identities=23%  Similarity=0.348  Sum_probs=22.9

Q ss_pred             hhHHHHhCCccCceEEEEecCCCCCeeEEEeee
Q 034345           19 QDVARDFGAACTPEFFLFKKDGRRPFQLVYHGQ   51 (97)
Q Consensus        19 q~va~a~gA~~TPe~fvld~~g~~~~~l~Y~G~   51 (97)
                      .++++.|+...+|+++++ ++|+  ..-+|.|.
T Consensus        61 ~~l~~~~~V~~~Pt~~~~-~~G~--~v~~~~G~   90 (103)
T cd02985          61 MELCRREKIIEVPHFLFY-KDGE--KIHEEEGI   90 (103)
T ss_pred             HHHHHHcCCCcCCEEEEE-eCCe--EEEEEeCC
Confidence            379999999999996555 7885  45567774

CDSP32 is a stress-inducible TRX, i.e., it acts as a TRX by reducing protein disulfides and is induced by environmental and oxidative stress conditions. It plays a critical role in plastid defense against oxidative damage, a role related to its function as a physiological electron donor to BAS1, a plastidic 2-cys peroxiredoxin. Plants lacking CDSP32 exhibit decreased photosystem II photochemical efficiencies and chlorophyll retention compared to WT controls, as well as an increased proportion of BAS1 in its overoxidized monomeric form.

>cd03004 PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains

Probab=90.31  E-value=0.4  Score=30.28  Aligned_cols=36  Identities=11%  Similarity=0.167  Sum_probs=29.3

Q ss_pred             EeChhhHHHHhCCccCceEEEEecCCCCCeeEEEeeec
Q 034345           15 LFQSQDVARDFGAACTPEFFLFKKDGRRPFQLVYHGQF   52 (97)
Q Consensus        15 ~D~~q~va~a~gA~~TPe~fvld~~g~~~~~l~Y~G~I   52 (97)
                      .|+..++++.||...+|+++++.+.|+  ...+|.|..
T Consensus        59 ~~~~~~~~~~~~i~~~Pt~~~~~~g~~--~~~~~~G~~   94 (104)
T cd03004          59 CQKYESLCQQANIRAYPTIRLYPGNAS--KYHSYNGWH   94 (104)
T ss_pred             CCchHHHHHHcCCCcccEEEEEcCCCC--CceEccCCC
Confidence            466778999999999999999988744  377888854

This subfamily is composed of the three TRX domains located at the C-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation. Also included in the alignment is the single complete TRX domain of an uncharacterized protein from Tetraodon nigroviridis, which also contains a DnaJ domain at its N-terminus.

>cd02948 TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fusion protein family; most members of this group are fusion proteins which contain one redox active TRX domain containing a CXXC motif and three NDPK domains, and are characterized as intermediate chains (ICs) of axonemal outer arm dynein

Probab=90.15  E-value=0.66  Score=29.72  Aligned_cols=43  Identities=21%  Similarity=0.516  Sum_probs=28.4

Q ss_pred             hhhHHHHhCCccCceEEEEecCCCCCeeEEEeeecCCCCCCCCCCCcHHHHHHHHHHH
Q 034345           18 SQDVARDFGAACTPEFFLFKKDGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECV   75 (97)
Q Consensus        18 ~q~va~a~gA~~TPe~fvld~~g~~~~~l~Y~G~IDd~~~~~~~~~t~~~L~~Ai~al   75 (97)
                      ..+++++|+...+|+++++ ++|+  ..-+..|.            +..++..+|+.|
T Consensus        60 ~~~~~~~~~v~~~Pt~~~~-~~g~--~~~~~~G~------------~~~~~~~~i~~~  102 (102)
T cd02948          60 TIDTLKRYRGKCEPTFLFY-KNGE--LVAVIRGA------------NAPLLNKTITEL  102 (102)
T ss_pred             CHHHHHHcCCCcCcEEEEE-ECCE--EEEEEecC------------ChHHHHHHHhhC
Confidence            5688999999999976666 5673  12233332            134788888754

Dyneins are molecular motors that generate force against microtubules to produce cellular movement, and are divided into two classes: axonemal and cytoplasmic. They are supramolecular complexes consisting of three protein groups classified according to size: dynein heavy, intermediate and light chains. Axonemal dyneins form two structures, the inner and outer arms, which are attached to doublet microtubules throughout the cilia and flagella. The human homolog is the sperm-specific Sptrx-2, presumed to be a component of the human sperm axoneme architecture. Included in this group is another human protein, TRX-like protein 2, a smaller fusion protein containing one TRX and one NDPK domain, which

>cd02998 PDI_a_ERp38 PDIa family, endoplasmic reticulum protein 38 (ERp38) subfamily; composed of proteins similar to the P5-like protein first isolated from alfalfa, which contains two redox active TRX (a) domains at the N-terminus, like human P5, and a C-terminal domain with homology to the C-terminal domain of ERp29, unlike human P5

Probab=89.84  E-value=0.36  Score=29.93  Aligned_cols=33  Identities=24%  Similarity=0.485  Sum_probs=26.6

Q ss_pred             hhhHHHHhCCccCceEEEEecCCCCCeeEEEeeec
Q 034345           18 SQDVARDFGAACTPEFFLFKKDGRRPFQLVYHGQF   52 (97)
Q Consensus        18 ~q~va~a~gA~~TPe~fvld~~g~~~~~l~Y~G~I   52 (97)
                      ...+++.|+...+|+++++++++.  ....|.|..
T Consensus        64 ~~~~~~~~~i~~~P~~~~~~~~~~--~~~~~~g~~   96 (105)
T cd02998          64 NKDLAKKYGVSGFPTLKFFPKGST--EPVKYEGGR   96 (105)
T ss_pred             chhhHHhCCCCCcCEEEEEeCCCC--CccccCCcc
Confidence            468999999999999999998864  256777753

The cDNA clone of this protein (named G1) was isolated from an alfalfa cDNA library by screening with human protein disulfide isomerase (PDI) cDNA. The G1 protein is constitutively expressed in all major organs of the plant and its expression is induced by treatment with tunicamycin, indicating that it may be a glucose-regulated protein. The G1 homolog in the eukaryotic social amoeba Dictyostelium discoideum is also described as a P5-like protein, which is located in the endoplasmic reticulum (ER) despite the absence of an ER-retrieval signal. G1 homologs from Aspergillus niger and Neurospora crassa have also been characterized, and are named TIGA and ER

>cd03003 PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains

Probab=89.57  E-value=0.34  Score=30.62  Aligned_cols=34  Identities=21%  Similarity=0.359  Sum_probs=26.1

Q ss_pred             EeChhhHHHHhCCccCceEEEEecCCCCCeeEEEeee
Q 034345           15 LFQSQDVARDFGAACTPEFFLFKKDGRRPFQLVYHGQ   51 (97)
Q Consensus        15 ~D~~q~va~a~gA~~TPe~fvld~~g~~~~~l~Y~G~   51 (97)
                      .|+...++++|+...+|+++++ ++|.  ..-+|.|.
T Consensus        58 ~~~~~~~~~~~~v~~~Pt~~~~-~~g~--~~~~~~G~   91 (101)
T cd03003          58 CGDDRMLCRSQGVNSYPSLYVF-PSGM--NPEKYYGD   91 (101)
T ss_pred             CCccHHHHHHcCCCccCEEEEE-cCCC--CcccCCCC
Confidence            4666799999999999999999 5664  24556663

This subfamily is comprised of the first TRX domain of ERdj5 located after the DnaJ domain at the N-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation.

>cd03026 AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) subfamily, C-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which then reduces hydrogen peroxide and organic hydroperoxides

Probab=89.05  E-value=0.46  Score=30.48  Aligned_cols=38  Identities=24%  Similarity=0.312  Sum_probs=27.4

Q ss_pred             hcceeEE-EeChhhHHHHhCCccCceEEEEecCCCCCeeEEEeeec
Q 034345            8 FLMWLIT-LFQSQDVARDFGAACTPEFFLFKKDGRRPFQLVYHGQF   52 (97)
Q Consensus         8 ~~~fpvL-~D~~q~va~a~gA~~TPe~fvld~~g~~~~~l~Y~G~I   52 (97)
                      .+.|-++ .|+..++|+.||...+|.+++   +|    ++.+.|+.
T Consensus        43 ~i~~~~vd~~~~~e~a~~~~V~~vPt~vi---dG----~~~~~G~~   81 (89)
T cd03026          43 NIEHEMIDGALFQDEVEERGIMSVPAIFL---NG----ELFGFGRM   81 (89)
T ss_pred             CceEEEEEhHhCHHHHHHcCCccCCEEEE---CC----EEEEeCCC
Confidence            3444433 235567999999999999975   67    78999853

AhpF contains an NTD containing two contiguous TRX-fold subdomains similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The catalytic CXXC motif of the NTD of AhpF is contained in its C-terminal TRX subdomain.

>TIGR02187 GlrX_arch Glutaredoxin-like domain protein

Probab=89.01  E-value=1  Score=32.79  Aligned_cols=34  Identities=15%  Similarity=0.321  Sum_probs=26.6

Q ss_pred             ChhhHHHHhCCccCceEEEEecCCCCCeeEEEeeec
Q 034345           17 QSQDVARDFGAACTPEFFLFKKDGRRPFQLVYHGQF   52 (97)
Q Consensus        17 ~~q~va~a~gA~~TPe~fvld~~g~~~~~l~Y~G~I   52 (97)
                      +..++++.||...+|++.+++....  ...+|.|..
T Consensus        65 ~~~~l~~~~~V~~~Pt~~~f~~g~~--~~~~~~G~~   98 (215)
T TIGR02187        65 EDKEEAEKYGVERVPTTIILEEGKD--GGIRYTGIP   98 (215)
T ss_pred             ccHHHHHHcCCCccCEEEEEeCCee--eEEEEeecC
Confidence            6789999999999999999975431  124788953

This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.

>cd03000 PDI_a_TMX3 PDIa family, TMX3 subfamily; composed of eukaryotic proteins similar to human TMX3, a TRX related transmembrane protein containing one redox active TRX domain at the N-terminus and a classical ER retrieval sequence for type I transmembrane proteins at the C-terminus

Probab=88.84  E-value=0.73  Score=29.33  Aligned_cols=32  Identities=25%  Similarity=0.389  Sum_probs=25.3

Q ss_pred             eChhhHHHHhCCccCceEEEEecCCCCCeeEEEeee
Q 034345           16 FQSQDVARDFGAACTPEFFLFKKDGRRPFQLVYHGQ   51 (97)
Q Consensus        16 D~~q~va~a~gA~~TPe~fvld~~g~~~~~l~Y~G~   51 (97)
                      |....+++.|+...+|++++++. |.   ..+|.|.
T Consensus        59 ~~~~~~~~~~~I~~~Pt~~l~~~-~~---~~~~~G~   90 (104)
T cd03000          59 TAYSSIASEFGVRGYPTIKLLKG-DL---AYNYRGP   90 (104)
T ss_pred             ccCHhHHhhcCCccccEEEEEcC-CC---ceeecCC
Confidence            45678999999999999999954 32   5677774

The TMX3 transcript is found in a variety of tissues with the highest levels detected in skeletal muscle and the heart. In vitro, TMX3 showed oxidase activity albeit slightly lower than that of protein disulfide isomerase.

>cd02947 TRX_family TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains

Probab=88.74  E-value=1.1  Score=26.28  Aligned_cols=34  Identities=21%  Similarity=0.401  Sum_probs=25.3

Q ss_pred             EeChhhHHHHhCCccCceEEEEecCCCCCeeEEEeee
Q 034345           15 LFQSQDVARDFGAACTPEFFLFKKDGRRPFQLVYHGQ   51 (97)
Q Consensus        15 ~D~~q~va~a~gA~~TPe~fvld~~g~~~~~l~Y~G~   51 (97)
                      .+...++++.||...+|.++++++..   ..-.|.|.
T Consensus        49 ~~~~~~~~~~~~v~~~P~~~~~~~g~---~~~~~~g~   82 (93)
T cd02947          49 VDENPELAEEYGVRSIPTFLFFKNGK---EVDRVVGA   82 (93)
T ss_pred             CCCChhHHHhcCcccccEEEEEECCE---EEEEEecC
Confidence            34457899999999999999997554   34555553

Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functio

>PF00837 T4_deiodinase: Iodothyronine deiodinase; InterPro: IPR000643 Iodothyronine deiodinase (1

Probab=88.55  E-value=2.3  Score=32.68  Aligned_cols=54  Identities=22%  Similarity=0.349  Sum_probs=37.3

Q ss_pred             cceeEEEeCh-hhHHHHhCCccCceEEEEecCCCCCeeEEEeeecCCCCCCCCCCCcHHHHHHHHHH
Q 034345            9 LMWLITLFQS-QDVARDFGAACTPEFFLFKKDGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIEC   74 (97)
Q Consensus         9 ~~fpvL~D~~-q~va~a~gA~~TPe~fvld~~g~~~~~l~Y~G~IDd~~~~~~~~~t~~~L~~Ai~a   74 (97)
                      ..+|+++|.= ....++|||.  ||-+.|=.+|    ++.|.|..--      ..=...+|++.++.
T Consensus       181 ~~~pi~vD~mdN~~~~~YgA~--PeRlyIi~~g----kv~Y~Gg~GP------~~y~~~e~r~~L~~  235 (237)
T PF00837_consen  181 PQCPIVVDTMDNNFNKAYGAL--PERLYIIQDG----KVVYKGGPGP------FGYSPEELREWLEK  235 (237)
T ss_pred             CCCCEEEEccCCHHHHHhCCC--cceEEEEECC----EEEEeCCCCC------CcCCHHHHHHHHHh
Confidence            5789999984 4566999984  6654444588    8999998432      22245578877765

97.1.10 from EC) (DI) [] is the vertebrate enzyme responsible for the deiodination of the prohormone thyroxine (T4 or 3,5,3',5'-tetraiodothyronine) into the biologically active hormone T3 (3,5,3'-triiodothyronine) and of T3 into the inactive metabolite T2 (3,3'-diiodothyronine). All known DI are proteins of about 250 residues that contain a selenocysteine at their active site. Three types of DI are known, type II is essential for providing the brain with the appropriate levels of T3 during the critical period of development, and type III is essential for the regulation of thyroid hormone inactivation during embryological development.; GO: 0004800 thyroxine 5'-deiodinase activity, 0055114 oxidation-reduction process

>cd02997 PDI_a_PDIR PDIa family, PDIR subfamily; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related)

Probab=88.54  E-value=0.79  Score=28.44  Aligned_cols=32  Identities=22%  Similarity=0.533  Sum_probs=24.1

Q ss_pred             hhhHHHHhCCccCceEEEEecCCCCCeeEEEeeec
Q 034345           18 SQDVARDFGAACTPEFFLFKKDGRRPFQLVYHGQF   52 (97)
Q Consensus        18 ~q~va~a~gA~~TPe~fvld~~g~~~~~l~Y~G~I   52 (97)
                      ...+++.||...+|+.+++. +|+  ...+|.|.+
T Consensus        64 ~~~~~~~~~i~~~Pt~~~~~-~g~--~~~~~~g~~   95 (104)
T cd02997          64 HDALKEEYNVKGFPTFKYFE-NGK--FVEKYEGER   95 (104)
T ss_pred             cHHHHHhCCCccccEEEEEe-CCC--eeEEeCCCC
Confidence            56889999999999977665 554  356777754

PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity.

>cd02962 TMX2 TMX2 family; composed of proteins similar to human TMX2, a 372-amino acid TRX-related transmembrane protein, identified and characterized through the cloning of its cDNA from a human fetal library

Probab=88.47  E-value=1.3  Score=31.35  Aligned_cols=38  Identities=24%  Similarity=0.297  Sum_probs=28.9

Q ss_pred             EEeChhhHHHHhCCcc------CceEEEEecCCCCCeeEEEeeecCCC
Q 034345           14 TLFQSQDVARDFGAAC------TPEFFLFKKDGRRPFQLVYHGQFDDS   55 (97)
Q Consensus        14 L~D~~q~va~a~gA~~------TPe~fvld~~g~~~~~l~Y~G~IDd~   55 (97)
                      =.|+..+++++|+...      +|+++++. +|+  ..-++.|. ++.
T Consensus        87 Dvd~~~~la~~~~V~~~~~v~~~PT~ilf~-~Gk--~v~r~~G~-~~~  130 (152)
T cd02962          87 DIGRFPNVAEKFRVSTSPLSKQLPTIILFQ-GGK--EVARRPYY-NDS  130 (152)
T ss_pred             ECCCCHHHHHHcCceecCCcCCCCEEEEEE-CCE--EEEEEecc-ccC
Confidence            3477889999999988      99999986 664  36678884 444

It contains a TRX domain but the redox active CXXC motif is replaced with SXXC. Sequence analysis predicts that TMX2 may be a Type I membrane protein, with its C-terminal half protruding on the luminal side of the endoplasmic reticulum (ER). In addition to the TRX domain, transmembrane region and ER-retention signal, TMX2 also contains a Myb DNA-binding domain repeat signature and a dileucine motif in the tail.

>COG3054 Predicted transcriptional regulator [General function prediction only]

Probab=87.99  E-value=1.5  Score=32.32  Aligned_cols=40  Identities=23%  Similarity=0.402  Sum_probs=32.2

Q ss_pred             EEEeChhhHHH-HhCCc-cCceEEEEecCCCCCeeEEEeeecCCC
Q 034345           13 ITLFQSQDVAR-DFGAA-CTPEFFLFKKDGRRPFQLVYHGQFDDS   55 (97)
Q Consensus        13 vL~D~~q~va~-a~gA~-~TPe~fvld~~g~~~~~l~Y~G~IDd~   55 (97)
                      +++|+.+ +|+ +++-+ ..--+.|+|++|+  ++.+--|++.++
T Consensus       129 ~vlD~~g-vak~AWqL~e~~SaivVlDk~G~--VkfvkeGaLt~a  170 (184)
T COG3054         129 FVLDSNG-VAKNAWQLKEESSAVVVLDKDGR--VKFVKEGALTQA  170 (184)
T ss_pred             eEEccch-hhhhhhccccccceEEEEcCCCc--EEEEecCCccHH
Confidence            7889998 666 99954 7888999999996  677777877555

>PF13728 TraF: F plasmid transfer operon protein

Probab=87.54  E-value=1.4  Score=32.67  Aligned_cols=35  Identities=23%  Similarity=0.480  Sum_probs=27.8

Q ss_pred             hhhHHHHhCCccCceEEEEecCCCCCeeEEEeeecC
Q 034345           18 SQDVARDFGAACTPEFFLFKKDGRRPFQLVYHGQFD   53 (97)
Q Consensus        18 ~q~va~a~gA~~TPe~fvld~~g~~~~~l~Y~G~ID   53 (97)
                      +..+++.||...||..||+++++.. +..+-.|-++
T Consensus       172 ~~g~~~~l~v~~~Pal~Lv~~~~~~-~~pv~~G~~s  206 (215)
T PF13728_consen  172 DPGQAKRLGVKVTPALFLVNPNTKK-WYPVSQGFMS  206 (215)
T ss_pred             CHHHHHHcCCCcCCEEEEEECCCCe-EEEEeeecCC
Confidence            4779999999999999999999843 4556666553

>cd02984 TRX_PICOT TRX domain, PICOT (for PKC-interacting cousin of TRX) subfamily; PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes

Probab=86.82  E-value=1.2  Score=27.50  Aligned_cols=25  Identities=20%  Similarity=0.596  Sum_probs=20.7

Q ss_pred             eChhhHHHHhCCccCceEEEEecCCC
Q 034345           16 FQSQDVARDFGAACTPEFFLFKKDGR   41 (97)
Q Consensus        16 D~~q~va~a~gA~~TPe~fvld~~g~   41 (97)
                      ++..++++.|+...+|++++++ +|+
T Consensus        55 ~~~~~~~~~~~i~~~Pt~~~~~-~g~   79 (97)
T cd02984          55 EELPEISEKFEITAVPTFVFFR-NGT   79 (97)
T ss_pred             ccCHHHHHhcCCccccEEEEEE-CCE
Confidence            4556889999999999999995 674

PICOT contains an N-terminal TRX-like domain, which does not contain the catalytic CXXC motif, followed by one to three glutaredoxin domains. The TRX-like domain is required for interaction with PKC theta. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli.

>cd02957 Phd_like Phosducin (Phd)-like family; composed of Phd and Phd-like proteins (PhLP), characterized as cytosolic regulators of G protein functions

Probab=85.67  E-value=4.2  Score=26.38  Aligned_cols=52  Identities=12%  Similarity=0.118  Sum_probs=34.4

Q ss_pred             EEeChh-hHHHHhCCccCceEEEEecCCCCCeeEEEeeecCCCCCCCCCCCcHHHHHHHH
Q 034345           14 TLFQSQ-DVARDFGAACTPEFFLFKKDGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAI   72 (97)
Q Consensus        14 L~D~~q-~va~a~gA~~TPe~fvld~~g~~~~~l~Y~G~IDd~~~~~~~~~t~~~L~~Ai   72 (97)
                      -+|.+. ++++.|+...+|+++++.. |+  ..-++.|..+...    ..-+...|++++
T Consensus        60 ~vd~~~~~l~~~~~i~~~Pt~~~f~~-G~--~v~~~~G~~~~~~----~~~~~~~l~~~l  112 (113)
T cd02957          60 KINAEKAFLVNYLDIKVLPTLLVYKN-GE--LIDNIVGFEELGG----DDFTTEDLEKFL  112 (113)
T ss_pred             EEEchhhHHHHhcCCCcCCEEEEEEC-CE--EEEEEecHHHhCC----CCCCHHHHHHHh
Confidence            345544 9999999999999888864 53  3456777655431    444566676654

Phd and PhLPs specifically bind G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane and impeding G protein-mediated signal transduction by inhibiting the formation of a functional G protein trimer (G protein alphabetagamma). Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-te

>cd02954 DIM1 Dim1 family; Dim1 is also referred to as U5 small nuclear ribonucleoprotein particle (snRNP)-specific 15kD protein

Probab=84.91  E-value=2.7  Score=28.58  Aligned_cols=58  Identities=12%  Similarity=0.157  Sum_probs=40.4

Q ss_pred             EEEeChhhHHHHhCCccCceEEEEecCCCCCeeEEEeeecCCCCCCCCCCCcHHHHHHHHHH
Q 034345           13 ITLFQSQDVARDFGAACTPEFFLFKKDGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIEC   74 (97)
Q Consensus        13 vL~D~~q~va~a~gA~~TPe~fvld~~g~~~~~l~Y~G~IDd~~~~~~~~~t~~~L~~Ai~a   74 (97)
                      |=.|+..++++.||....|+++++.. |+  ..-+..|+.|...- .....++..+-+.|+-
T Consensus        52 VDvD~~~~la~~~~V~~iPTf~~fk~-G~--~v~~~~G~~~~~~~-~~~~~~~~~~~~~~~~  109 (114)
T cd02954          52 VDIDEVPDFNKMYELYDPPTVMFFFR-NK--HMKIDLGTGNNNKI-NWVFEDKQEFIDIIET  109 (114)
T ss_pred             EECCCCHHHHHHcCCCCCCEEEEEEC-CE--EEEEEcCCCCCceE-EEecCcHHHHHHHHHH
Confidence            44688999999999999999999974 53  35566688887742 2223345566665544

It is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 interacts with multiple splicing-associated proteins, suggesting that it functions at multiple control points in the splicing of pre-mRNA as part of a large spliceosomal complex involving many protein-protein interactions. U5 snRNP contains seven core proteins (common to all snRNPs) and nine U5-specific proteins, one of which is Dim1. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif. It is essential for G2/M phase transition, as a consequence to its role in pre-mRNA splicing.

>PRK00293 dipZ thiol:disulfide interchange protein precursor; Provisional

Probab=84.28  E-value=1.1  Score=37.87  Aligned_cols=24  Identities=13%  Similarity=0.447  Sum_probs=21.9

Q ss_pred             hhhHHHHhCCccCceEEEEecCCC
Q 034345           18 SQDVARDFGAACTPEFFLFKKDGR   41 (97)
Q Consensus        18 ~q~va~a~gA~~TPe~fvld~~g~   41 (97)
                      .++++++||...+|+++++|++|+
T Consensus       523 ~~~l~~~~~v~g~Pt~~~~~~~G~  546 (571)
T PRK00293        523 DVALLKHYNVLGLPTILFFDAQGQ  546 (571)
T ss_pred             hHHHHHHcCCCCCCEEEEECCCCC
Confidence            368999999999999999999995

>cd02995 PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain (a') subfamily; composed of the C-terminal redox active a' domains of PDI, ERp72, ERp57 (or ERp60) and EFP1

Probab=83.92  E-value=2.8  Score=25.77  Aligned_cols=34  Identities=21%  Similarity=0.428  Sum_probs=25.6

Q ss_pred             hhhHHHHhCCccCceEEEEecCCCCCeeEEEeeec
Q 034345           18 SQDVARDFGAACTPEFFLFKKDGRRPFQLVYHGQF   52 (97)
Q Consensus        18 ~q~va~a~gA~~TPe~fvld~~g~~~~~l~Y~G~I   52 (97)
                      ..+++..++...+|+++++.+++.. -..+|.|..
T Consensus        62 ~~~~~~~~~~~~~Pt~~~~~~~~~~-~~~~~~g~~   95 (104)
T cd02995          62 ANDVPSEFVVDGFPTILFFPAGDKS-NPIKYEGDR   95 (104)
T ss_pred             chhhhhhccCCCCCEEEEEcCCCcC-CceEccCCc
Confidence            3468889999999999999877611 157788864

PDI, ERp72 and ERp57 are endoplasmic reticulum (ER)-resident eukaryotic proteins involved in oxidative protein folding. They are oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. PDI and ERp57 have the abb'a' domain structure (where a and a' are redox active TRX domains while b and b' are redox inactive TRX-like domains). PDI also contains an acidic region (c domain) after the a' domain that is absent in ERp57. ERp72 has an additional a domain at the N-terminus (a"abb'a' domain structure). ERp57 interacts with the lectin chaperones, calnexin and calreticu

>cd02996 PDI_a_ERp44 PDIa family, endoplasmic reticulum protein 44 (ERp44) subfamily; ERp44 is an ER-resident protein, induced during stress, involved in thiol-mediated ER retention

Probab=83.66  E-value=1.5  Score=27.96  Aligned_cols=41  Identities=24%  Similarity=0.464  Sum_probs=29.2

Q ss_pred             cceeEE-EeChhhHHHHhCCccCceEEEEecCCCCCeeEEEeee
Q 034345            9 LMWLIT-LFQSQDVARDFGAACTPEFFLFKKDGRRPFQLVYHGQ   51 (97)
Q Consensus         9 ~~fpvL-~D~~q~va~a~gA~~TPe~fvld~~g~~~~~l~Y~G~   51 (97)
                      +.|..+ .|...+++++||.+..|+.+++ ++|+. ....|.|.
T Consensus        57 ~~~~~vd~d~~~~l~~~~~v~~~Ptl~~~-~~g~~-~~~~~~g~   98 (108)
T cd02996          57 VVWGKVDCDKESDIADRYRINKYPTLKLF-RNGMM-MKREYRGQ   98 (108)
T ss_pred             EEEEEEECCCCHHHHHhCCCCcCCEEEEE-eCCcC-cceecCCC
Confidence            444433 6778899999999999999999 45631 13666663

It contains an N-terminal TRX domain, similar to that of PDIa, with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. The CXFS motif in the N-terminal domain allows ERp44 to form stable reversible mixed disulfides with its substrates. Through this activity, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. It also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol.

>KOG0852 consensus Alkyl hydroperoxide reductase, thiol specific antioxidant and related enzymes [Posttranslational modification, protein turnover, chaperones]

Probab=82.35  E-value=1.3  Score=33.06  Aligned_cols=32  Identities=25%  Similarity=0.459  Sum_probs=25.7

Q ss_pred             cceeEEEeChhhHHHHhCCccCce------EEEEecCC
Q 034345            9 LMWLITLFQSQDVARDFGAACTPE------FFLFKKDG   40 (97)
Q Consensus         9 ~~fpvL~D~~q~va~a~gA~~TPe------~fvld~~g   40 (97)
                      +++|+|.|.+.++++.||.-..=+      -|+||++|
T Consensus        97 ~~iPllsD~~~~IsrdyGvL~~~~G~~lRglfIId~~g  134 (196)
T KOG0852|consen   97 LNIPLLSDLNHEISRDYGVLKEDEGIALRGLFIIDPDG  134 (196)
T ss_pred             cccceeeccchhhHHhcCceecCCCcceeeeEEEcccc
Confidence            569999999999999999654333      47788877

>cd02965 HyaE HyaE family; HyaE is also called HupG and HoxO

Probab=82.21  E-value=2.8  Score=28.48  Aligned_cols=38  Identities=29%  Similarity=0.503  Sum_probs=28.4

Q ss_pred             eEEEeChhhHHHHhCCccCceEEEEecCCCCCeeEEEeeec
Q 034345           12 LITLFQSQDVARDFGAACTPEFFLFKKDGRRPFQLVYHGQF   52 (97)
Q Consensus        12 pvL~D~~q~va~a~gA~~TPe~fvld~~g~~~~~l~Y~G~I   52 (97)
                      -+-.|+.+++|..||....|++.++.. |+  ..-+..|.+
T Consensus        66 kVdid~~~~la~~f~V~sIPTli~fkd-Gk--~v~~~~G~~  103 (111)
T cd02965          66 VVGRADEQALAARFGVLRTPALLFFRD-GR--YVGVLAGIR  103 (111)
T ss_pred             EEECCCCHHHHHHcCCCcCCEEEEEEC-CE--EEEEEeCcc
Confidence            355688889999999999999988864 53  244556743

They are proteins serving a critical role in the assembly of multimeric [NiFe] hydrogenases, the enzymes that catalyze the oxidation of molecular hydrogen to enable microorganisms to utilize hydrogen as the sole energy source. The E. coli HyaE protein is a chaperone that specifically interacts with the twin-arginine translocation (Tat) signal peptide of the [NiFe] hydrogenase-1 beta subunit precursor. Tat signal peptides target precursor proteins to the Tat protein export system, which facilitates the transport of fully folded proteins across the inner membrane. HyaE may be involved in regulating the traffic of [NiFe] hydrogenase-1 on the Tat transport pathway.

>KOG0907 consensus Thioredoxin [Posttranslational modification, protein turnover, chaperones]

Probab=81.50  E-value=2.4  Score=28.26  Aligned_cols=34  Identities=24%  Similarity=0.428  Sum_probs=27.4

Q ss_pred             EeChhhHHHHhCCccCceEEEEecCCCCCeeEEEeee
Q 034345           15 LFQSQDVARDFGAACTPEFFLFKKDGRRPFQLVYHGQ   51 (97)
Q Consensus        15 ~D~~q~va~a~gA~~TPe~fvld~~g~~~~~l~Y~G~   51 (97)
                      .|+.+++|+.|+...+|++..+ ++|+  ......|+
T Consensus        60 vde~~~~~~~~~V~~~PTf~f~-k~g~--~~~~~vGa   93 (106)
T KOG0907|consen   60 VDELEEVAKEFNVKAMPTFVFY-KGGE--EVDEVVGA   93 (106)
T ss_pred             cccCHhHHHhcCceEeeEEEEE-ECCE--EEEEEecC
Confidence            3555999999999999999999 5554  37778886

>PF13192 Thioredoxin_3: Thioredoxin domain; PDB: 1ZYP_B 1ZYN_A 1HYU_A 1ILO_A 1J08_F 2YWM_B 2AYT_B 2HLS_B 1A8L_A 2K8S_B

Probab=80.42  E-value=2.7  Score=25.72  Aligned_cols=24  Identities=21%  Similarity=0.703  Sum_probs=18.6

Q ss_pred             HHHhCCccCceEEEEecCCCCCeeEEEeeec
Q 034345           22 ARDFGAACTPEFFLFKKDGRRPFQLVYHGQF   52 (97)
Q Consensus        22 a~a~gA~~TPe~fvld~~g~~~~~l~Y~G~I   52 (97)
                      ...||...+|..++   +|    +++|.|++
T Consensus        42 ~~~ygv~~vPalvI---ng----~~~~~G~~   65 (76)
T PF13192_consen   42 IEKYGVMSVPALVI---NG----KVVFVGRV   65 (76)
T ss_dssp             HHHTT-SSSSEEEE---TT----EEEEESS-
T ss_pred             HHHcCCCCCCEEEE---CC----EEEEEecC
Confidence            38999999999954   57    89999963

...

>PRK11657 dsbG disulfide isomerase/thiol-disulfide oxidase; Provisional

Probab=80.05  E-value=1.7  Score=32.85  Aligned_cols=33  Identities=33%  Similarity=0.534  Sum_probs=26.8

Q ss_pred             eChhhHHHHhCCccCceEEEEecCCCCCeeE-EEeeec
Q 034345           16 FQSQDVARDFGAACTPEFFLFKKDGRRPFQL-VYHGQF   52 (97)
Q Consensus        16 D~~q~va~a~gA~~TPe~fvld~~g~~~~~l-~Y~G~I   52 (97)
                      +++.++++++|.+-||.+|+.|.+|    ++ .-.|..
T Consensus       206 ~~n~~l~~~lGv~GTPaiv~~d~~G----~~~~v~G~~  239 (251)
T PRK11657        206 ADNQKLMDDLGANATPAIYYMDKDG----TLQQVVGLP  239 (251)
T ss_pred             HHHHHHHHHcCCCCCCEEEEECCCC----CEEEecCCC
Confidence            5567799999999999999999888    44 556764

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	97
2ywi_A	196	Crystal Structure Of Uncharacterized Conserved Prot		3e-18
3u5r_E	218	Crystal Structure Of A Hypothetical Protein Smc0235		4e-18
2cvb_A	188	Crystal Structure Of A Thioredoxin-Like Protein Fro		2e-06

>pdb|2YWI|A Chain A, Crystal Structure Of Uncharacterized Conserved Protein From Geobacillus Kaustophilus Length = 196

Iteration: 1
 Score = 86.7 bits (213), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 40/83 (48%), Positives = 56/83 (67%), Gaps = 8/83 (9%)
Query: 17  QSQDVARDFGAACTPEFFLFKKDGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECVL 76
           ++Q+VA+ + AACTP+F++F +D     + VY GQ DDSRP+N +PVTG  IR A++ +L
Sbjct: 118 ETQEVAKAYDAACTPDFYIFDRD----LKCVYRGQLDDSRPNNGIPVTGESIRAALDALL 173
Query: 77  SGQPVSSNQKP----SIKWHPQT 95
            G+PV   QKP    SIKW P  
Sbjct: 174 EGRPVPEKQKPSIGCSIKWKPSA 196

>pdb|3U5R|E Chain E, Crystal Structure Of A Hypothetical Protein Smc02350 From Sinorhizobium Meliloti 1021 Length = 218

Iteration: 1
 Score = 86.3 bits (212), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 42/78 (53%), Positives = 54/78 (69%), Gaps = 8/78 (10%)
Query: 18  SQDVARDFGAACTPEFFLFKKDGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECVLS 77
           SQ VA+ +GAACTP+FFL+ ++ R    LVYHGQFDD+RP N   VTG D+R A++ VL 
Sbjct: 132 SQSVAKAYGAACTPDFFLYDRERR----LVYHGQFDDARPGNGKDVTGADLRAAVDAVLK 187
Query: 78  GQPVSSNQKPS----IKW 91
           G+ V + Q PS    IKW
Sbjct: 188 GKDVGTTQVPSIGCNIKW 205

>pdb|2CVB|A Chain A, Crystal Structure Of A Thioredoxin-Like Protein From Thermus Thermophilus Hb8 Length = 188

Iteration: 1
 Score = 47.4 bits (111), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 32/83 (38%), Positives = 46/83 (55%), Gaps = 9/83 (10%)
Query: 15  LFQSQDVARDFGAACTPEFFLFKKDGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIEC 74
           L ++Q+VA+ + A  TPE FLF  D RR   L YHG+ +D+ P +   V   D+  AIE 
Sbjct: 102 LDETQEVAKAYRALRTPEVFLF--DERR--LLRYHGRVNDN-PKDPSKVQSHDLEAAIEA 156
Query: 75  VLSGQPVSSNQKPS----IKWHP 93
           +L G+     + P+    IKW P
Sbjct: 157 LLRGEEPPLKEAPAIGCTIKWRP 179

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	97
2ywi_A	196	Hypothetical conserved protein; uncharacterized co	3e-35
3u5r_E	218	Uncharacterized protein; structural genomics, PSI-	3e-35
2cvb_A	188	Probable thiol-disulfide isomerase/thioredoxin; re	3e-31

>2ywi_A Hypothetical conserved protein; uncharacterized conserved protein, NPPSFA, national project protein structural and functional analyses; 1.60A {Geobacillus kaustophilus} Length = 196

 Score =  117 bits (296), Expect = 3e-35
 Identities = 40/81 (49%), Positives = 56/81 (69%), Gaps = 8/81 (9%)

Query: 17  QSQDVARDFGAACTPEFFLFKKDGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECVL 76
           ++Q+VA+ + AACTP+F++F +D +     VY GQ DDSRP+N +PVTG  IR A++ +L
Sbjct: 118 ETQEVAKAYDAACTPDFYIFDRDLK----CVYRGQLDDSRPNNGIPVTGESIRAALDALL 173

Query: 77  SGQPVSSNQKPS----IKWHP 93
            G+PV   QKPS    IKW P
Sbjct: 174 EGRPVPEKQKPSIGCSIKWKP 194

>3u5r_E Uncharacterized protein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, hypothetical protein; 2.05A {Sinorhizobium meliloti} Length = 218

 Score =  118 bits (297), Expect = 3e-35
 Identities = 42/81 (51%), Positives = 54/81 (66%), Gaps = 8/81 (9%)

Query: 17  QSQDVARDFGAACTPEFFLFKKDGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECVL 76
            SQ VA+ +GAACTP+FFL+ ++ R    LVYHGQFDD+RP N   VTG D+R A++ VL
Sbjct: 131 ASQSVAKAYGAACTPDFFLYDRERR----LVYHGQFDDARPGNGKDVTGADLRAAVDAVL 186

Query: 77  SGQPVSSNQKPS----IKWHP 93
            G+ V + Q PS    IKW  
Sbjct: 187 KGKDVGTTQVPSIGCNIKWTA 207

>2cvb_A Probable thiol-disulfide isomerase/thioredoxin; redox protein, structural genomics, riken struc genomics/proteomics initiative, RSGI; 1.80A {Thermus thermophilus} SCOP: c.47.1.10 PDB: 2ywo_A Length = 188

 Score =  107 bits (269), Expect = 3e-31
 Identities = 28/80 (35%), Positives = 42/80 (52%), Gaps = 9/80 (11%)

Query: 18  SQDVARDFGAACTPEFFLFKKDGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECVLS 77
           +Q+VA+ + A  TPE FLF +       L YHG+ +D+ P +   V   D+  AIE +L 
Sbjct: 105 TQEVAKAYRALRTPEVFLFDERRL----LRYHGRVNDN-PKDPSKVQSHDLEAAIEALLR 159

Query: 78  GQPVSSNQKPS----IKWHP 93
           G+     + P+    IKW P
Sbjct: 160 GEEPPLKEAPAIGCTIKWRP 179

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	97
3u5r_E	218	Uncharacterized protein; structural genomics, PSI-	99.7
2ywi_A	196	Hypothetical conserved protein; uncharacterized co	99.57
2cvb_A	188	Probable thiol-disulfide isomerase/thioredoxin; re	99.55
1zye_A	220	Thioredoxin-dependent peroxide reductase; catenane	98.99
2i81_A	213	2-Cys peroxiredoxin; structural genomics consortiu	98.92
1n8j_A	186	AHPC, alkyl hydroperoxide reductase C22 protein; p	98.83
3eyt_A	158	Uncharacterized protein SPOA0173; thioredoxin-like	98.83
3lor_A	160	Thiol-disulfide isomerase and thioredoxins; PSI, M	98.81
2pn8_A	211	Peroxiredoxin-4; thioredoxin, oxidoreductase, stru	98.8
1uul_A	202	Tryparedoxin peroxidase homologue; peroxiredoxin,	98.79
2h01_A	192	2-Cys peroxiredoxin; thioredoxin peroxidase, struc	98.78
2c0d_A	221	Thioredoxin peroxidase 2; peroxiredoxin, 2-Cys, th	98.76
1qmv_A	197	Human thioredoxin peroxidase-B; peroxiredoxin, sul	98.75
2f9s_A	151	Thiol-disulfide oxidoreductase RESA; thioredoxin-l	98.73
2bmx_A	195	Alkyl hydroperoxidase C; peroxiredoxin, antioxidan	98.73
2b5x_A	148	YKUV protein, TRXY; thioredoxin-like, oxidoreducta	98.73
3ztl_A	222	Thioredoxin peroxidase; oxidoreductase, reductase,	98.71
1we0_A	187	Alkyl hydroperoxide reductase C; peroxiredoxin, AH	98.7
2l5o_A	153	Putative thioredoxin; structural genomics, unknown	98.69
3qpm_A	240	Peroxiredoxin; oxidoreductase, thioredoxin fold, p	98.69
4g2e_A	157	Peroxiredoxin; redox protein, structural genomics,	98.68
3ha9_A	165	Uncharacterized thioredoxin-like protein; PSI, MCS	98.66
2v2g_A	233	Peroxiredoxin 6; oxidoreductase, antioxidant enzym	98.62
3tjj_A	254	Peroxiredoxin-4; thioredoxin fold, sulfenylation,	98.6
3gl3_A	152	Putative thiol:disulfide interchange protein DSBE;	98.59
1zof_A	198	Alkyl hydroperoxide-reductase; decamer, toroide-sh	98.58
1xcc_A	220	1-Cys peroxiredoxin; unknown function, structural	98.57
3kcm_A	154	Thioredoxin family protein; SGX, thioredoxin prote	98.57
1lu4_A	136	Soluble secreted antigen MPT53; thioredoxin-like f	98.54
2lrn_A	152	Thiol:disulfide interchange protein; structural ge	98.51
1zzo_A	136	RV1677; thioredoxin fold, structural genomics, PSI	98.51
1prx_A	224	HORF6; peroxiredoxin, hydrogen peroxide, redox reg	98.51
4gqc_A	164	Thiol peroxidase, peroxiredoxin Q; CXXXXC motif, f	98.49
4evm_A	138	Thioredoxin family protein; structural genomics, n	98.46
3raz_A	151	Thioredoxin-related protein; structural genomics,	98.45
3a2v_A	249	Probable peroxiredoxin; thioredoxin peroxidase, hy	98.44
3drn_A	161	Peroxiredoxin, bacterioferritin comigratory prote	98.42
3ia1_A	154	THIO-disulfide isomerase/thioredoxin; oxidoreducta	98.41
3gkn_A	163	Bacterioferritin comigratory protein; BCP, PRX, at	98.38
3hdc_A	158	Thioredoxin family protein; ATCC53774, DSM 7210, ,	98.38
3keb_A	224	Probable thiol peroxidase; structural genomics, AP	98.37
1kng_A	156	Thiol:disulfide interchange protein CYCY; thioredo	98.35
2h30_A	164	Thioredoxin, peptide methionine sulfoxide reductas	98.35
3fkf_A	148	Thiol-disulfide oxidoreductase; structural genomic	98.35
3fw2_A	150	Thiol-disulfide oxidoreductase; structural genomic	98.35
1jfu_A	186	Thiol:disulfide interchange protein TLPA; thioredo	98.33
3p7x_A	166	Probable thiol peroxidase; thioredoxin fold, oxido	98.32
1xvw_A	160	Hypothetical protein RV2238C/MT2298; thioredoxin f	98.32
3erw_A	145	Sporulation thiol-disulfide oxidoreductase A; thio	98.31
3kh7_A	176	Thiol:disulfide interchange protein DSBE; TRX-like	98.3
2lja_A	152	Putative thiol-disulfide oxidoreductase; structura	98.29
2lrt_A	152	Uncharacterized protein; structural genomics, thio	98.29
3lwa_A	183	Secreted thiol-disulfide isomerase; thioredoxin, P	98.28
2jsy_A	167	Probable thiol peroxidase; solution structure, ant	98.27
1xzo_A	174	BSSCO, hypothetical protein YPMQ; thioredoxin-like	98.21
3zrd_A	200	Thiol peroxidase; oxidoreductase, 2Cys peroxiredox	98.19
3ewl_A	142	Uncharacterized conserved protein BF1870; alpha-be	98.19
3ixr_A	179	Bacterioferritin comigratory protein; alpha beta p	98.19
3or5_A	165	Thiol:disulfide interchange protein, thioredoxin p	98.15
2hyx_A	352	Protein DIPZ; thioredoxin fold, jelly-roll, struct	98.15
2b1k_A	168	Thiol:disulfide interchange protein DSBE; C-termin	98.15
1xvq_A	175	Thiol peroxidase; thioredoxin fold, structural gen	98.14
1psq_A	163	Probable thiol peroxidase; structural genomics, NY	98.13
2yzh_A	171	Probable thiol peroxidase; redox protein, antioxid	98.11
2a4v_A	159	Peroxiredoxin DOT5; yeast nuclear thiol peroxidase	98.08
1q98_A	165	Thiol peroxidase, TPX; structural genomics, NYSGXR	98.06
3mng_A	173	Peroxiredoxin-5, mitochondrial; peroxidase, PRXV,	98.05
4eo3_A	322	Bacterioferritin comigratory protein/NADH dehydro;	98.03
1tp9_A	162	Peroxiredoxin, PRX D (type II); oligomer, thioredo	98.0
2ggt_A	164	SCO1 protein homolog, mitochondrial; copper chaper	97.99
3hcz_A	148	Possible thiol-disulfide isomerase; APC61559.2, cy	97.98
2wfc_A	167	Peroxiredoxin 5, PRDX5; oxidoreductase, antioxidan	97.97
2v1m_A	169	Glutathione peroxidase; selenium, selenocysteine,	97.88
2rli_A	171	SCO2 protein homolog, mitochondrial; copper protei	97.88
2ls5_A	159	Uncharacterized protein; structural genomics, unkn	97.1
2k6v_A	172	Putative cytochrome C oxidase assembly protein; th	97.82
3tue_A	219	Tryparedoxin peroxidase; thioredoxin fold, peroxir	97.73
3eur_A	142	Uncharacterized protein; PSI2,MCSG, conserved prot	97.71
3dwv_A	187	Glutathione peroxidase-like protein; alpha beta, 3	97.71
3sbc_A	216	Peroxiredoxin TSA1; alpha-beta fold, peroxidase, c	97.69
3uma_A	184	Hypothetical peroxiredoxin protein; nysgrc, PSI bi	97.69
4fo5_A	143	Thioredoxin-like protein; AHPC/TSA family protein,	97.59
2l5l_A	136	Thioredoxin; structural genomics, electron transpo	97.57
2l57_A	126	Uncharacterized protein; structural genomics, unkn	97.57
2p5q_A	170	Glutathione peroxidase 5; thioredoxin fold, oxidor	97.57
2pwj_A	171	Mitochondrial peroxiredoxin; alpha and beta protei	97.54
3hxs_A	141	Thioredoxin, TRXP; electron transport; 2.00A {Bact	97.5
3cmi_A	171	Peroxiredoxin HYR1; thioredoxin-like fold, oxidore	97.49
2vup_A	190	Glutathione peroxidase-like protein; oxidoreductas	97.49
2kuc_A	130	Putative disulphide-isomerase; structural genomics	97.42
1nm3_A	241	Protein HI0572; hybrid, peroxiredoxin, glutaredoxi	97.42
2gs3_A	185	PHGPX, GPX-4, phospholipid hydroperoxide glutathio	97.34
2ju5_A	154	Thioredoxin disulfide isomerase; protein, oxidored	97.34
2obi_A	183	PHGPX, GPX-4, phospholipid hydroperoxide glutathio	97.31
2f8a_A	208	Glutathione peroxidase 1; thioredoxin fold, struct	97.27
2p31_A	181	CL683, glutathione peroxidase 7; thioredoxin fold,	97.27
3me7_A	170	Putative uncharacterized protein; electron transfe	97.23
3fk8_A	133	Disulphide isomerase; APC61824.1, xylella fastidio	97.16
2lus_A	143	Thioredoxion; CR-Trp16, oxidoreductase; NMR {Carci	96.17
1thx_A	115	Thioredoxin, thioredoxin 2; oxido-reductase, elect	97.1
1i5g_A	144	Tryparedoxin II; electron transport; HET: TS5; 1.4	97.09
2trx_A	108	Thioredoxin; electron transport; 1.68A {Escherichi	97.08
2b7k_A	200	SCO1 protein; metallochaperone, cytochrome C oxida	97.04
1o8x_A	146	Tryparedoxin, TRYX, TXNI; tryparedoxin-I, synchrot	97.03
1dby_A	107	Chloroplast thioredoxin M CH2; thioredoxin CH2, ch	96.97
2e0q_A	104	Thioredoxin; electron transport; 1.49A {Sulfolobus	96.94
1v98_A	140	Thioredoxin; oxidoreductase, structural genomics,	96.9
1o73_A	144	Tryparedoxin; electron transport, trypanosomatid,	96.85
2fwh_A	134	Thiol:disulfide interchange protein DSBD; thioredo	96.81
3tco_A	109	Thioredoxin (TRXA-1); disulfide oxidoreductase, ox	96.8
1nsw_A	105	Thioredoxin, TRX; thermostability, electron transp	96.78
3d22_A	139	TRXH4, thioredoxin H-type; electron transport, cyt	96.77
1t00_A	112	Thioredoxin, TRX; redox regulation, multifunction	96.77
1x5d_A	133	Protein disulfide-isomerase A6; PDIA6, ERP5, TXNDC	96.72
3s9f_A	165	Tryparedoxin; thioredoxin fold, disulfide reductas	96.71
2i4a_A	107	Thioredoxin; acidophIle, disulfide exchange, oxido	96.7
1w4v_A	119	Thioredoxin, mitochondrial; antioxidant enzyme, mi	96.67
2es7_A	142	Q8ZP25_salty, putative thiol-disulfide isomerase a	96.64
4f82_A	176	Thioredoxin reductase; structural genomics, niaid,	96.61
1xiy_A	182	Peroxiredoxin, pfaop; alpha-aneurysm, thioredoxin	96.6
2lst_A	130	Thioredoxin; structural genomics, NEW YORK structu	95.63
2r37_A	207	Glutathione peroxidase 3; plasma, structural genom	96.59
2dj1_A	140	Protein disulfide-isomerase A4; protein ERP-72, ER	96.59
1ep7_A	112	Thioredoxin CH1, H-type; electron transport; 2.10A	96.59
2o8v_B	128	Thioredoxin 1; disulfide crosslinked complex, oxid	96.58
2i3y_A	215	Epididymal secretory glutathione peroxidase; thior	96.58
2dml_A	130	Protein disulfide-isomerase A6; thioredoxin domain	96.57
1ti3_A	113	Thioredoxin H, PTTRXH1; oxidoreductase; NMR {Popul	96.55
1nho_A	85	Probable thioredoxin; beta sheet, alpha helix, oxi	96.52
2yzu_A	109	Thioredoxin; redox protein, electron transport, st	96.5
1fb6_A	105	Thioredoxin M; electron transport; 2.10A {Spinacia	96.42
2vlu_A	122	Thioredoxin, thioredoxin H isoform 2.; oxidoreduct	96.37
3p2a_A	148	Thioredoxin 2, putative thioredoxin-like protein;	96.36
3die_A	106	Thioredoxin, TRX; electron transport, SWAP domain,	96.35
2pu9_C	111	TRX-F, thioredoxin F-type, chloroplast; protein-pr	96.32
3qfa_C	116	Thioredoxin; protein-protein complex, rossmann fol	96.29
2ppt_A	155	Thioredoxin-2; thiredoxin, zinc finger, oxidoreduc	96.26
2voc_A	112	Thioredoxin; electron transport, homodimer, disulf	96.25
1oaz_A	123	Thioredoxin 1; immune system, antibody/complex, an	96.24
1fo5_A	85	Thioredoxin; disulfide oxidoreductase, structural	96.17
3gnj_A	111	Thioredoxin domain protein; APC92103, STR genomics	96.16
3hz4_A	140	Thioredoxin; NYSGXRC, PSI-II, reduced form, protei	96.13
3emx_A	135	Thioredoxin; structural genomics, oxidoreductase,	96.12
2l6c_A	110	Thioredoxin; oxidoreductase; NMR {Desulfovibrio vu	96.12
2j23_A	121	Thioredoxin; immune protein, autoreactivity, cross	96.1
3m9j_A	105	Thioredoxin; oxidoreductase; 1.10A {Homo sapiens}	96.04
2yj7_A	106	LPBCA thioredoxin; oxidoreductase; 1.65A {Syntheti	95.03
1xfl_A	124	Thioredoxin H1; AT3G51030, structural genomics, pr	95.99
3cxg_A	133	Putative thioredoxin; malaria, structural GEN oxid	95.98
3f3q_A	109	Thioredoxin-1; His TAG, electron transport, cytopl	95.96
2vim_A	104	Thioredoxin, TRX; thioredoxin fold, oxidoreductase	95.95
2i1u_A	121	Thioredoxin, TRX, MPT46; redox protein, electron t	95.92
3f9u_A	172	Putative exported cytochrome C biogenesis-related;	95.88
2wz9_A	153	Glutaredoxin-3; protein binding; 1.55A {Homo sapie	95.86
2vm1_A	118	Thioredoxin, thioredoxin H isoform 1.; oxidoreduct	95.77
3kij_A	180	Probable glutathione peroxidase 8; human PDI-perox	95.76
1xwb_A	106	Thioredoxin; dimerization, redox regulation, THI X	95.75
4euy_A	105	Uncharacterized protein; structural genomics, PSI-	95.72
1x5e_A	126	Thioredoxin domain containing protein 1; TMX, TXND	95.72
1r26_A	125	Thioredoxin; redox-active disulfide, electron tran	95.71
2xc2_A	117	Thioredoxinn; oxidoreductase, protein disulfide re	95.7
3aps_A	122	DNAJ homolog subfamily C member 10; thioredoxin fo	95.68
2xhf_A	171	Peroxiredoxin 5; oxidoreductase, antioxidant enzym	95.58
3apq_A	210	DNAJ homolog subfamily C member 10; thioredoxin fo	95.49
1syr_A	112	Thioredoxin; SGPP, structural genomics, PSI, prote	95.3
3d6i_A	112	Monothiol glutaredoxin-3; thioredoxin-like, electr	95.29
1gh2_A	107	Thioredoxin-like protein; redox-active center, ele	95.29
1mek_A	120	Protein disulfide isomerase; electron transport, r	95.28
1faa_A	124	Thioredoxin F; electron transport; 1.85A {Spinacia	95.21
1wmj_A	130	Thioredoxin H-type; structural genomics, program f	95.21
3dxb_A	222	Thioredoxin N-terminally fused to PUF60(UHM); spli	95.17
3idv_A	241	Protein disulfide-isomerase A4; thioredoxin-like f	95.16
4hde_A	170	SCO1/SENC family lipoprotein; structural genomics,	94.81
3uvt_A	111	Thioredoxin domain-containing protein 5; thioredox	94.68
3q6o_A	244	Sulfhydryl oxidase 1; protein disulfide isomerase,	94.61
1a8l_A	226	Protein disulfide oxidoreductase; PDI, thioredoxin	94.55
2dj3_A	133	Protein disulfide-isomerase A4; protein ERP-72, ER	94.49
3ul3_B	128	Thioredoxin, thioredoxin-2; PTEX, oxidoreductase;	94.38
2qgv_A	140	Hydrogenase-1 operon protein HYAE; alpha-beta prot	94.26
3gix_A	149	Thioredoxin-like protein 4B; PRE-mRNA splicing, TX	94.23
3h79_A	127	Thioredoxin-like protein; thioredoxin fold, cataly	94.14
2djk_A	133	PDI, protein disulfide-isomerase; thioredoxin fold	93.89
2oe3_A	114	Thioredoxin-3; electron transport, alpha/beta sand	93.84
1v58_A	241	Thiol:disulfide interchange protein DSBG; reduced	93.74
3gv1_A	147	Disulfide interchange protein; neisseria gonorrhoe	93.68
2qsi_A	137	Putative hydrogenase expression/formation protein;	93.56
1ilo_A	77	Conserved hypothetical protein MTH895; beta-alpha-	93.55
2ywm_A	229	Glutaredoxin-like protein; redox protein, structur	93.3
1qgv_A	142	Spliceosomal protein U5-15KD; snRNP, thioredoxin,	93.29
3iv4_A	112	Putative oxidoreductase; APC23140, meticillin-resi	93.13
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	93.06
3f4s_A	226	Alpha-DSBA1, putative uncharacterized protein; thi	93.03
2f51_A	118	Thioredoxin; electron transport; 1.90A {Trichomona	92.92
3zzx_A	105	Thioredoxin; oxidoreductase; 1.88A {Litopenaeus va	92.83
1sen_A	164	Thioredoxin-like protein P19; endoplasmic reticulu	92.68
3gha_A	202	Disulfide bond formation protein D; BDBD, DSBA-lik	92.62
3gyk_A	175	27KDA outer membrane protein; APC61738.2, siliciba	92.56
1ttz_A	87	Conserved hypothetical protein; structural genomic	92.54
2hls_A	243	Protein disulfide oxidoreductase; thioredoxin fold	92.44
3feu_A	185	Putative lipoprotein; alpha-beta structure, struct	92.0
3idv_A	241	Protein disulfide-isomerase A4; thioredoxin-like f	91.99
2znm_A	195	Thiol:disulfide interchange protein DSBA; thioredo	91.73
2k8s_A	80	Thioredoxin; dimer, structural genomics, PSI-2, pr	91.4
1zma_A	118	Bacterocin transport accessory protein; alpha-beta	91.15
2dlx_A	153	UBX domain-containing protein 7; UAS domain, prote	91.13
3h93_A	192	Thiol:disulfide interchange protein DSBA; disulfid	91.08
2dj0_A	137	Thioredoxin-related transmembrane protein 2; AVLA2	91.02
4dvc_A	184	Thiol:disulfide interchange protein DSBA; pilus as	90.9
2in3_A	216	Hypothetical protein; DSBA family, FRNE-like subfa	90.84
2ywm_A	229	Glutaredoxin-like protein; redox protein, structur	90.66
3t58_A	519	Sulfhydryl oxidase 1; oxidoreductase; HET: FAD; 2.	90.35
2av4_A	160	Thioredoxin-like protein 4A (DIM1); U5 snRNP-SPECI	90.03
2rem_A	193	Disulfide oxidoreductase; disulfide oxidoreductase	90.0
3ph9_A	151	Anterior gradient protein 3 homolog; thioredoxin f	89.86
3dml_A	116	Putative uncharacterized protein; thioredoxin, oxi	89.69
1a8l_A	226	Protein disulfide oxidoreductase; PDI, thioredoxin	89.41
3bci_A	186	Disulfide bond protein A; thiol-disulfide oxidored	89.16
3ira_A	173	Conserved protein; methanosarcina mazei,structural	88.93
3q6o_A	244	Sulfhydryl oxidase 1; protein disulfide isomerase,	88.62
1eej_A	216	Thiol:disulfide interchange protein; oxidoreductas	88.38
3kp8_A	106	Vkorc1/thioredoxin domain protein; blood coagulati	88.26
3t58_A	519	Sulfhydryl oxidase 1; oxidoreductase; HET: FAD; 2.	87.07
1t3b_A	211	Thiol:disulfide interchange protein DSBC; oxidored	86.78
1sji_A	350	Calsequestrin 2, calsequestrin, cardiac muscle iso	86.73
3kzq_A	208	Putative uncharacterized protein VP2116; protein w	85.41
3c7m_A	195	Thiol:disulfide interchange protein DSBA-like; red	85.35
3gmf_A	205	Protein-disulfide isomerase; oxidoreductase, PSI-2	84.91
2hls_A	243	Protein disulfide oxidoreductase; thioredoxin fold	84.44
3hz8_A	193	Thiol:disulfide interchange protein DSBA; thiol-ox	84.23
2djj_A	121	PDI, protein disulfide-isomerase; thioredoxin fold	83.62
1wjk_A	100	C330018D20RIK protein; glutaredoxin, thioredoxin f	83.28
1z6m_A	175	Conserved hypothetical protein; structural genomic	81.27
3gl5_A	239	Putative DSBA oxidoreductase SCO1869; probable DSB	80.93
1z6n_A	167	Hypothetical protein PA1234; alpha-beta-alpha sand	80.78
3hd5_A	195	Thiol:disulfide interchange protein DSBA; protein	80.49
3us3_A	367	Calsequestrin-1; calcium-binding protein; 1.74A {O	80.3

>3u5r_E Uncharacterized protein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, hypothetical protein; 2.05A {Sinorhizobium meliloti}

Probab=99.70  E-value=7.7e-17  Score=115.42  Aligned_cols=84  Identities=49%  Similarity=0.848  Sum_probs=76.0

Q ss_pred             hcceeEEEeChhhHHHHhCCccCceEEEEecCCCCCeeEEEeeecCCCCCCCCCCCcHHHHHHHHHHHHcCCCCCCCCCC
Q 034345            8 FLMWLITLFQSQDVARDFGAACTPEFFLFKKDGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECVLSGQPVSSNQKP   87 (97)
Q Consensus         8 ~~~fpvL~D~~q~va~a~gA~~TPe~fvld~~g~~~~~l~Y~G~IDd~~~~~~~~~t~~~L~~Ai~alLaG~~v~~~~t~   87 (97)
                      .++||++.|.+++++++||+..+|++||||++|    +++|+|++|++.+......+..+|+++|+++|+|++++.++++
T Consensus       122 ~~~~~~l~D~~~~~~~~~~v~~~P~~~liD~~G----~i~~~g~~d~~~~~~~~~~~~~~l~~~i~~ll~~~~~~~~~~~  197 (218)
T 3u5r_E          122 GYGFPYLKDASQSVAKAYGAACTPDFFLYDRER----RLVYHGQFDDARPGNGKDVTGADLRAAVDAVLKGKDVGTTQVP  197 (218)
T ss_dssp             TCCSCEEECTTCHHHHHHTCCEESEEEEECTTC----BEEEEECSSSCCTTSCCCCCCHHHHHHHHHHHTTCCCCSCCCC
T ss_pred             CCCccEEECCccHHHHHcCCCCCCeEEEECCCC----cEEEeccccccccccccccCHHHHHHHHHHHHcCCCCCcCCcC
Confidence            578999999999999999999999999999999    7999999999865555566788999999999999999999999


Q ss_pred             c----eeecCCC
Q 034345           88 S----IKWHPQT   95 (97)
Q Consensus        88 ~----IKw~~~~   95 (97)
                      +    |||+++.
T Consensus       198 ~~GC~i~w~~~~  209 (218)
T 3u5r_E          198 SIGCNIKWTAGN  209 (218)
T ss_dssp             CEEEECCCCCC-
T ss_pred             CCCeeEEeCCCC
Confidence            8    9998653

>2ywi_A Hypothetical conserved protein; uncharacterized conserved protein, NPPSFA, national project protein structural and functional analyses; 1.60A {Geobacillus kaustophilus}

Probab=99.57  E-value=1.4e-14  Score=99.82  Aligned_cols=84  Identities=48%  Similarity=0.905  Sum_probs=73.3

Q ss_pred             hcceeEEEeChhhHHHHhCCccCceEEEEecCCCCCeeEEEeeecCCCCCCCCCCCcHHHHHHHHHHHHcCCCCCCCCCC
Q 034345            8 FLMWLITLFQSQDVARDFGAACTPEFFLFKKDGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECVLSGQPVSSNQKP   87 (97)
Q Consensus         8 ~~~fpvL~D~~q~va~a~gA~~TPe~fvld~~g~~~~~l~Y~G~IDd~~~~~~~~~t~~~L~~Ai~alLaG~~v~~~~t~   87 (97)
                      .++||++.|+++++++.||...+|++||||++|    +++|+|.+|+.........+...|+++|++++++++++.++++
T Consensus       109 ~~~~~~~~d~~~~~~~~~~v~~~P~~~lid~~G----~i~~~~~~~~~~~~~~g~~~~~~l~~~i~~ll~~~~~~~~~~~  184 (196)
T 2ywi_A          109 GYPFPYLYDETQEVAKAYDAACTPDFYIFDRDL----KCVYRGQLDDSRPNNGIPVTGESIRAALDALLEGRPVPEKQKP  184 (196)
T ss_dssp             TCCSCEEECSSCHHHHHHTCCEESEEEEEETTC----BEEEEECSSSCCTTTCCCCCCHHHHHHHHHHHHTCCCCSCCCC
T ss_pred             CCCceEEECCchHHHHHhCCCCCCeEEEEcCCC----eEEEccccCcccccccCccCHHHHHHHHHHHHcCCCCCCCCCC
Confidence            578999999999999999999999999999999    7999999998753122233567899999999999999999999


Q ss_pred             c----eeecCCC
Q 034345           88 S----IKWHPQT   95 (97)
Q Consensus        88 ~----IKw~~~~   95 (97)
                      +    |+|+++.
T Consensus       185 ~~gC~~~~~~~~  196 (196)
T 2ywi_A          185 SIGCSIKWKPSA  196 (196)
T ss_dssp             CEEEECCCCCCC
T ss_pred             CCceeeeeccCC
Confidence            8    9998874

>2cvb_A Probable thiol-disulfide isomerase/thioredoxin; redox protein, structural genomics, riken struc genomics/proteomics initiative, RSGI; 1.80A {Thermus thermophilus} SCOP: c.47.1.10 PDB: 2ywo_A

Probab=99.55  E-value=1.6e-14  Score=99.52  Aligned_cols=83  Identities=34%  Similarity=0.598  Sum_probs=71.7

Q ss_pred             hcceeEEEeChhhHHHHhCCccCceEEEEecCCCCCeeEEEeeecCCCCCCCCCCCcHHHHHHHHHHHHcCCCCCCCCCC
Q 034345            8 FLMWLITLFQSQDVARDFGAACTPEFFLFKKDGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECVLSGQPVSSNQKP   87 (97)
Q Consensus         8 ~~~fpvL~D~~q~va~a~gA~~TPe~fvld~~g~~~~~l~Y~G~IDd~~~~~~~~~t~~~L~~Ai~alLaG~~v~~~~t~   87 (97)
                      .++||++.|.+++++++||+..+|++||||++|    +++|+|.+|+... .....+...|+++|++++++++++.++++
T Consensus        95 ~~~~~~~~d~~~~~~~~~~v~~~P~~~lid~~G----~i~~~g~~~~~~~-~~g~~~~~~l~~~i~~ll~~~~~~~~~~~  169 (188)
T 2cvb_A           95 GIFFPYLLDETQEVAKAYRALRTPEVFLFDERR----LLRYHGRVNDNPK-DPSKVQSHDLEAAIEALLRGEEPPLKEAP  169 (188)
T ss_dssp             TCCSCEEECSSSHHHHHTTCCEESEEEEECTTC----BEEEEECSSSCTT-CGGGCCCCHHHHHHHHHHTTCCCCSSCCC
T ss_pred             CCCceEEECCcchHHHHcCCCCCCeEEEECCCC----cEEEEEecCCccc-cccccCHHHHHHHHHHHHcCCCCCcccCC
Confidence            478999999999999999999999999999999    7999999987642 11222345899999999999999999999


Q ss_pred             c----eeecCCC
Q 034345           88 S----IKWHPQT   95 (97)
Q Consensus        88 ~----IKw~~~~   95 (97)
                      +    |+|++|+
T Consensus       170 ~~gc~~~~~~~~  181 (188)
T 2cvb_A          170 AIGCTIKWRPGN  181 (188)
T ss_dssp             CCSEECCCCTTC
T ss_pred             CCceEEEecCCC
Confidence            8    9998775

>1zye_A Thioredoxin-dependent peroxide reductase; catenane, dodecamer, peroxiredoxin, oxidoreductase; 3.30A {Bos taurus} SCOP: c.47.1.10

Probab=98.99  E-value=1.2e-09  Score=78.38  Aligned_cols=75  Identities=9%  Similarity=0.216  Sum_probs=50.3

Q ss_pred             hcceeEEEeChhhHHHHhCCc------cCceEEEEecCCCCCeeEEEe--eecCCCCCCCCCCCcHHHHHHHHHHHHcCC
Q 034345            8 FLMWLITLFQSQDVARDFGAA------CTPEFFLFKKDGRRPFQLVYH--GQFDDSRPSNNLPVTGRDIRLAIECVLSGQ   79 (97)
Q Consensus         8 ~~~fpvL~D~~q~va~a~gA~------~TPe~fvld~~g~~~~~l~Y~--G~IDd~~~~~~~~~t~~~L~~Ai~alLaG~   79 (97)
                      .++||++.|.+++++++||+.      .+|.+||||++|    +++|+  |.++..       .....+.++|++|+..+
T Consensus       119 ~~~fp~l~D~~~~i~~~ygv~~~~~g~~~P~~~liD~~G----~I~~~~~g~~~~~-------~~~~ell~~l~~l~~~~  187 (220)
T 1zye_A          119 HMNIALLSDLTKQISRDYGVLLEGPGLALRGLFIIDPNG----VIKHLSVNDLPVG-------RSVEETLRLVKAFQFVE  187 (220)
T ss_dssp             SCSSEEEECTTSHHHHHTTCEETTTTEECEEEEEECTTS----BEEEEEEECTTCC-------CCHHHHHHHHHHHHHTT
T ss_pred             CCceEEEECCcHHHHHHhCCeecCCCcccceEEEECCCC----EEEEEEecCCCCC-------CCHHHHHHHHHHhhhhc
Confidence            579999999999999999999      999999999999    56665  433222       24568999999999875


Q ss_pred             CCCCCCCCceeecCCC
Q 034345           80 PVSSNQKPSIKWHPQT   95 (97)
Q Consensus        80 ~v~~~~t~~IKw~~~~   95 (97)
                      ....  .-+++|++|+
T Consensus       188 ~~~~--~cp~~W~~g~  201 (220)
T 1zye_A          188 AHGE--VSPANWTPES  201 (220)
T ss_dssp             C---------------
T ss_pred             ccCC--ccCCCCCCCC
Confidence            3321  2239998774

>2i81_A 2-Cys peroxiredoxin; structural genomics consortium, SGC, oxidoreductase; 2.45A {Plasmodium vivax sai-1} PDB: 2h66_A

Probab=98.92  E-value=1.1e-09  Score=78.41  Aligned_cols=77  Identities=9%  Similarity=0.100  Sum_probs=57.6

Q ss_pred             hcceeEEEeChhhHHHHhCCc-----cCceEEEEecCCCCCeeEEEeeecCCCCCCCCCCCcHHHHHHHHHHHHcCCCCC
Q 034345            8 FLMWLITLFQSQDVARDFGAA-----CTPEFFLFKKDGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECVLSGQPVS   82 (97)
Q Consensus         8 ~~~fpvL~D~~q~va~a~gA~-----~TPe~fvld~~g~~~~~l~Y~G~IDd~~~~~~~~~t~~~L~~Ai~alLaG~~v~   82 (97)
                      .++||++.|++++++++||+.     .+|.+||||++|    +++|+..-+...     ......|.++|+++...+.- 
T Consensus       115 ~~~fp~l~D~~~~~~~~ygv~~~~g~~~p~~~lID~~G----~i~~~~~~~~~~-----~~~~~ell~~l~~l~~~~~~-  184 (213)
T 2i81_A          115 NIKHTLLSDITKSISKDYNVLFDDSVSLRAFVLIDMNG----IVQHLLVNNLAI-----GRSVDEILRIIDAIQHHEKY-  184 (213)
T ss_dssp             SCSSEEEECTTSHHHHHTTCEETTTEECEEEEEECTTS----BEEEEEEECTTC-----CCCHHHHHHHHHHHHHHHHH-
T ss_pred             CCCceEEECCchHHHHHhCCccccCCcccEEEEECCCC----EEEEEEecCCCC-----CCCHHHHHHHHHHHHhhhhc-
Confidence            579999999999999999999     999999999999    677775323221     12456888999998865421 


Q ss_pred             CCCCCceeecCCC
Q 034345           83 SNQKPSIKWHPQT   95 (97)
Q Consensus        83 ~~~t~~IKw~~~~   95 (97)
                       ...-++||++|+
T Consensus       185 -~~~cp~~w~~g~  196 (213)
T 2i81_A          185 -GDVCPANWQKGK  196 (213)
T ss_dssp             -CCBCCTTCCTTS
T ss_pred             -CCCcCCCCCcCC
Confidence             122238998775

>1n8j_A AHPC, alkyl hydroperoxide reductase C22 protein; peroxiredoxin, decamer, antioxidant, peroxidase, AHPF, oxidoreductase; 2.17A {Salmonella typhimurium} SCOP: c.47.1.10 PDB: 1yep_A 1yf1_A 1yf0_A 1yex_A 3emp_A

Probab=98.83  E-value=4.6e-09  Score=73.13  Aligned_cols=78  Identities=13%  Similarity=0.137  Sum_probs=54.7

Q ss_pred             hcceeEEEeChhhHHHHhCCc------cCceEEEEecCCCCCeeEEEeeecCCCCCCCCCCCcHHHHHHHHHHHHcCCCC
Q 034345            8 FLMWLITLFQSQDVARDFGAA------CTPEFFLFKKDGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECVLSGQPV   81 (97)
Q Consensus         8 ~~~fpvL~D~~q~va~a~gA~------~TPe~fvld~~g~~~~~l~Y~G~IDd~~~~~~~~~t~~~L~~Ai~alLaG~~v   81 (97)
                      .++||++.|.+++++++||+.      .+|++||||++|+  ++-+|.|......       ....+.++|++|..-+.-
T Consensus        90 ~~~fp~l~D~~~~~~~~ygv~~~~~g~~~p~~~lID~~G~--i~~~~~~~~~~~~-------~~~~l~~~l~~l~~~~~~  160 (186)
T 1n8j_A           90 KIKYAMIGDPTGALTRNFDNMREDEGLADRATFVVDPQGI--IQAIEVTAEGIGR-------DASDLLRKIKAAQYVAAH  160 (186)
T ss_dssp             GCCSEEEECTTSHHHHHTTCEETTTTEECEEEEEECTTSB--EEEEEEECTTBCC-------CHHHHHHHHHHHHHHHHS
T ss_pred             CCceeEEECCchHHHHHhCCccCCCCceeeEEEEECCCCe--EEEEEecCCCCCC-------CHHHHHHHHHHHHHHhhc
Confidence            678999999999999999987      5899999999994  3444445432111       245788889988763322


Q ss_pred             CCCCCCceeecCCC
Q 034345           82 SSNQKPSIKWHPQT   95 (97)
Q Consensus        82 ~~~~t~~IKw~~~~   95 (97)
                      + ...-+++|++|+
T Consensus       161 p-~~~~p~~w~~~~  173 (186)
T 1n8j_A          161 P-GEVCPAKWKEGE  173 (186)
T ss_dssp             T-TCBBCTTCCTTS
T ss_pred             C-CCccCCCCCCCC
Confidence            1 112239998775

>3eyt_A Uncharacterized protein SPOA0173; thioredoxin-like superfamily protein SPOA0173, silicibacter DSS, structural genomics, PSI-2; 1.95A {Silicibacter pomeroyi}

Probab=98.83  E-value=7e-09  Score=68.56  Aligned_cols=61  Identities=15%  Similarity=0.197  Sum_probs=50.1

Q ss_pred             hcceeEEEeChh-----hHHHHhCCccCceEEEEecCCCCCeeEEEeeecCCCCCCCCCCCcHHHHHHHHHHHHcCCCC
Q 034345            8 FLMWLITLFQSQ-----DVARDFGAACTPEFFLFKKDGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECVLSGQPV   81 (97)
Q Consensus         8 ~~~fpvL~D~~q-----~va~a~gA~~TPe~fvld~~g~~~~~l~Y~G~IDd~~~~~~~~~t~~~L~~Ai~alLaG~~v   81 (97)
                      .++||++.|..+     .+++.||...+|++||||++|+  ++-+|.|.++           ...|+++|+.+|+.+..
T Consensus        91 ~~~~~~~~d~~~~~~~~~~~~~~~v~~~P~~~lid~~G~--i~~~~~g~~~-----------~~~l~~~i~~ll~~~~~  156 (158)
T 3eyt_A           91 RIKFPVGVDQPGDGAMPRTMAAYQMRGTPSLLLIDKAGD--LRAHHFGDVS-----------ELLLGAEIATLLGEAAP  156 (158)
T ss_dssp             TCCSCEEEECCCSSSSCHHHHHTTCCSSSEEEEECTTSE--EEEEEESCCC-----------HHHHHHHHHHHHTSCCC
T ss_pred             CCCceEEEcCccchhhHHHHHHcCCCCCCEEEEECCCCC--EEEEEeCCCC-----------HHHHHHHHHHHhccCCC
Confidence            578999999998     6999999999999999999994  3445557543           34799999999987654

>3lor_A Thiol-disulfide isomerase and thioredoxins; PSI, MCSG, structural genomics, midwest CE structural genomics; HET: MSE; 2.20A {Corynebacterium glutamicum}

Probab=98.81  E-value=7.8e-09  Score=68.28  Aligned_cols=60  Identities=22%  Similarity=0.351  Sum_probs=49.5

Q ss_pred             hcceeEEEeChhh------HHHHhCCccCceEEEEecCCCCCeeEEEeeecCCCCCCCCCCCcHHHHHHHHHHHHcCCC
Q 034345            8 FLMWLITLFQSQD------VARDFGAACTPEFFLFKKDGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECVLSGQP   80 (97)
Q Consensus         8 ~~~fpvL~D~~q~------va~a~gA~~TPe~fvld~~g~~~~~l~Y~G~IDd~~~~~~~~~t~~~L~~Ai~alLaG~~   80 (97)
                      .++||++.|..+.      ++++||...+|..||||++|+  ++-+|.|.++.           ..|++.|+.+|+..+
T Consensus        93 ~~~~~~~~d~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~--i~~~~~g~~~~-----------~~l~~~i~~ll~~~~  158 (160)
T 3lor_A           93 GIKFPVAVDMPREGQRIPSTMKKYRLEGTPSIILADRKGR--IRQVQFGQVDD-----------FVLGLLLGSLLSETD  158 (160)
T ss_dssp             TCCSCEEEECCCTTCSSCHHHHHTTCCSSSEEEEECTTSB--EEEEEESCCCH-----------HHHHHHHHHHHTCC-
T ss_pred             CCCCcEEECCccccchhhhHHHhcccCccceEEEECCCCc--EEEEecCcCCH-----------HHHHHHHHHHHhccC
Confidence            5789999999998      999999999999999999994  44455576543           379999999998754

>2pn8_A Peroxiredoxin-4; thioredoxin, oxidoreductase, structural genomics consortium, SGC; 1.80A {Homo sapiens}

Probab=98.80  E-value=4.2e-09  Score=75.18  Aligned_cols=75  Identities=9%  Similarity=0.158  Sum_probs=54.9

Q ss_pred             hcceeEEEeChhhHHHHhCCc------cCceEEEEecCCCCCeeEEEe--eecCCCCCCCCCCCcHHHHHHHHHHHHcCC
Q 034345            8 FLMWLITLFQSQDVARDFGAA------CTPEFFLFKKDGRRPFQLVYH--GQFDDSRPSNNLPVTGRDIRLAIECVLSGQ   79 (97)
Q Consensus         8 ~~~fpvL~D~~q~va~a~gA~------~TPe~fvld~~g~~~~~l~Y~--G~IDd~~~~~~~~~t~~~L~~Ai~alLaG~   79 (97)
                      .++||++.|.+++++++||+.      .+|.+||||++|    +++|+  |.++..       .....+.++|++|...+
T Consensus       111 ~~~fp~l~D~~~~~~~~ygv~~~~~g~~~p~~~lID~~G----~I~~~~~g~~~~~-------~~~~ell~~l~~l~~~~  179 (211)
T 2pn8_A          111 PIRIPLLSDLTHQISKDYGVYLEDSGHTLRGLFIIDDKG----ILRQITLNDLPVG-------RSVDETLRLVQAFQYTD  179 (211)
T ss_dssp             SCSSCEEECTTSHHHHHTTCEETTTTEECEEEEEECTTS----BEEEEEEECTTBC-------CCHHHHHHHHHHHHHHH
T ss_pred             CCceEEEECCchHHHHHcCCcccCCCcccceEEEECCCC----EEEEEEecCCCCC-------CCHHHHHHHHHHhhhcc
Confidence            578999999999999999985      799999999999    56665  433221       13457888899888653


Q ss_pred             CCCCCCCCceeecCCC
Q 034345           80 PVSSNQKPSIKWHPQT   95 (97)
Q Consensus        80 ~v~~~~t~~IKw~~~~   95 (97)
                      ...  ..-+++|++|+
T Consensus       180 ~~~--~~~p~~w~~g~  193 (211)
T 2pn8_A          180 KHG--EVCPAGWKPGS  193 (211)
T ss_dssp             HHC--CBBCTTCCTTS
T ss_pred             cCC--cccCCCCCCCC
Confidence            321  12238998775

>1uul_A Tryparedoxin peroxidase homologue; peroxiredoxin, oxidoreductase; 2.8A {Trypanosoma cruzi} SCOP: c.47.1.10

Probab=98.79  E-value=4.4e-09  Score=73.65  Aligned_cols=75  Identities=8%  Similarity=0.102  Sum_probs=55.8

Q ss_pred             hcceeEEEeChhhHHHHhCCc------cCceEEEEecCCCCCeeEEEe--eecCCCCCCCCCCCcHHHHHHHHHHHHcCC
Q 034345            8 FLMWLITLFQSQDVARDFGAA------CTPEFFLFKKDGRRPFQLVYH--GQFDDSRPSNNLPVTGRDIRLAIECVLSGQ   79 (97)
Q Consensus         8 ~~~fpvL~D~~q~va~a~gA~------~TPe~fvld~~g~~~~~l~Y~--G~IDd~~~~~~~~~t~~~L~~Ai~alLaG~   79 (97)
                      .++||++.|.+++++++||+.      .+|++||||++|    +++|+  |..+..       .+...+.++|+++...+
T Consensus        99 ~~~~p~l~D~~~~~~~~ygv~~~~~g~~~P~~~lid~~G----~i~~~~~g~~~~~-------~~~~ell~~l~~l~~~~  167 (202)
T 1uul_A           99 QMNIPILADKTKCIMKSYGVLKEEDGVAYRGLFIIDPKQ----NLRQITVNDLPVG-------RDVDEALRLVKAFQFVE  167 (202)
T ss_dssp             SCSSCEEECTTCHHHHHHTCEETTTTEECEEEEEECTTS----BEEEEEEECTTBC-------CCHHHHHHHHHHHHHHH
T ss_pred             CCceeEEECCchHHHHHcCCccCCCCceeeEEEEECCCC----EEEEEEeCCCCCC-------CCHHHHHHHHHHhhhhh
Confidence            679999999999999999999      999999999999    56655  443222       24568899999988643


Q ss_pred             CCCCCCCCceeecCCC
Q 034345           80 PVSSNQKPSIKWHPQT   95 (97)
Q Consensus        80 ~v~~~~t~~IKw~~~~   95 (97)
                      .-  ...-+++|++|+
T Consensus       168 ~~--~~~~p~~w~~g~  181 (202)
T 1uul_A          168 KH--GEVCPANWKPGD  181 (202)
T ss_dssp             HH--SCBBCTTCCTTS
T ss_pred             hc--CCccCCCcCCCC
Confidence            21  111238888764

>2h01_A 2-Cys peroxiredoxin; thioredoxin peroxidase, structural genomics, SGC, structural genomics consortium, oxidoreductase; 2.30A {Plasmodium yoelii} SCOP: c.47.1.10

Probab=98.78  E-value=7.1e-09  Score=71.79  Aligned_cols=77  Identities=13%  Similarity=0.112  Sum_probs=55.3

Q ss_pred             hcceeEEEeChhhHHHHhCCc-----cCceEEEEecCCCCCeeEEEeeecCCCCCCCCCCCcHHHHHHHHHHHHcCCCCC
Q 034345            8 FLMWLITLFQSQDVARDFGAA-----CTPEFFLFKKDGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECVLSGQPVS   82 (97)
Q Consensus         8 ~~~fpvL~D~~q~va~a~gA~-----~TPe~fvld~~g~~~~~l~Y~G~IDd~~~~~~~~~t~~~L~~Ai~alLaG~~v~   82 (97)
                      .++||++.|.+++++++||+.     .+|++||||++|    +++|+..-+...     ......+.++|+++...+.- 
T Consensus        94 ~~~~~~l~D~~~~~~~~~gv~~~~g~~~P~~~liD~~G----~i~~~~~g~~~~-----~~~~~~l~~~l~~l~~~~~~-  163 (192)
T 2h01_A           94 NIKHTLISDISKSIARSYDVLFNESVALRAFVLIDKQG----VVQHLLVNNLAL-----GRSVDEILRLIDALQHHEKY-  163 (192)
T ss_dssp             SCSSEEEECTTSHHHHHTTCEETTTEECCEEEEECTTS----BEEEEEEGGGSS-----GGGHHHHHHHHHHHHHHHHH-
T ss_pred             CCCcCeEECCcHHHHHHhCCcCcCCceeeEEEEEcCCC----EEEEEEeCCCCC-----CCCHHHHHHHHHHHhhhhhc-
Confidence            578999999999999999999     999999999999    566664322211     12456788899988854322 


Q ss_pred             CCCCCceeecCCC
Q 034345           83 SNQKPSIKWHPQT   95 (97)
Q Consensus        83 ~~~t~~IKw~~~~   95 (97)
                       ...-+++|++|+
T Consensus       164 -~~~cp~~w~~~~  175 (192)
T 2h01_A          164 -GDVCPANWQKGK  175 (192)
T ss_dssp             -CCCCCSSCCCC-
T ss_pred             -CCCccCCCCCCC
Confidence             112238888764

>2c0d_A Thioredoxin peroxidase 2; peroxiredoxin, 2-Cys, thioredoxin dependant, mitochondrial, antioxidant, oxidoreductase, redox-active center; 1.78A {Plasmodium falciparum}

Probab=98.76  E-value=8.8e-09  Score=74.46  Aligned_cols=75  Identities=9%  Similarity=0.236  Sum_probs=49.3

Q ss_pred             hcceeEEEeChhhHHHHhCC-----ccCceEEEEecCCCCCeeEEEe--eecCCCCCCCCCCCcHHHHHHHHHHHHcCCC
Q 034345            8 FLMWLITLFQSQDVARDFGA-----ACTPEFFLFKKDGRRPFQLVYH--GQFDDSRPSNNLPVTGRDIRLAIECVLSGQP   80 (97)
Q Consensus         8 ~~~fpvL~D~~q~va~a~gA-----~~TPe~fvld~~g~~~~~l~Y~--G~IDd~~~~~~~~~t~~~L~~Ai~alLaG~~   80 (97)
                      .++||++.|.+++++++||+     ..+|.+||||++|    +++|+  |.....       .....+.++|++|...+.
T Consensus       119 ~~~fp~l~D~~~~~~~~ygv~~~~g~~~P~~~lID~~G----~I~~~~~g~~~~~-------~~~~ell~~l~~L~~~~~  187 (221)
T 2c0d_A          119 NVEFTLVSDINKDISKNYNVLYDNSFALRGLFIIDKNG----CVRHQTVNDLPIG-------RNVQEVLRTIDSIIHVDT  187 (221)
T ss_dssp             SCSSEEEECTTSHHHHHTTCEETTTEECEEEEEECTTS----BEEEEEEECTTCC-------CCHHHHHHHHHHHHHHHH
T ss_pred             CCceEEEECCchHHHHHcCCcccCCCccceEEEECCCC----eEEEEEecCCCCC-------CCHHHHHHHHHHHhhhhc
Confidence            57899999999999999999     4899999999999    56665  543222       135578888998886533


Q ss_pred             CCCCCCCceeecCCC
Q 034345           81 VSSNQKPSIKWHPQT   95 (97)
Q Consensus        81 v~~~~t~~IKw~~~~   95 (97)
                      -...  -+++|++++
T Consensus       188 ~~~~--cp~~W~~g~  200 (221)
T 2c0d_A          188 SGEV--CPINWKKGQ  200 (221)
T ss_dssp             HCCS--CC-------
T ss_pred             CCCc--CCCCCCCCC
Confidence            2111  138998764

>1qmv_A Human thioredoxin peroxidase-B; peroxiredoxin, sulphinic acid; 1.7A {Homo sapiens} SCOP: c.47.1.10 PDB: 1qq2_A 2z9s_A 2rii_A 3hy2_A*

Probab=98.75  E-value=8e-09  Score=71.92  Aligned_cols=77  Identities=10%  Similarity=0.190  Sum_probs=54.3

Q ss_pred             hcceeEEEeChhhHHHHhCCc------cCceEEEEecCCCCCeeEEEeeecCCCCCCCCCCCcHHHHHHHHHHHHcCCCC
Q 034345            8 FLMWLITLFQSQDVARDFGAA------CTPEFFLFKKDGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECVLSGQPV   81 (97)
Q Consensus         8 ~~~fpvL~D~~q~va~a~gA~------~TPe~fvld~~g~~~~~l~Y~G~IDd~~~~~~~~~t~~~L~~Ai~alLaG~~v   81 (97)
                      .++||++.|.+++++++||+.      .+|..||||++|+  ++-++.|.++...       ....+.++|+++...+. 
T Consensus        97 ~~~~p~l~D~~~~~~~~~gv~~~~~~~~~P~~~lid~~G~--i~~~~~g~~~~~~-------~~~e~l~~l~~l~~~~~-  166 (197)
T 1qmv_A           97 PLNIPLLADVTRRLSEDYGVLKTDEGIAYRGLFIIDGKGV--LRQITVNDLPVGR-------SVDEALRLVQAFQYTDE-  166 (197)
T ss_dssp             SCSSCEEECTTCHHHHHTTCEETTTTEECEEEEEECTTSB--EEEEEEECTTBCC-------CHHHHHHHHHHHHHHHH-
T ss_pred             CCceEEEECCcHHHHHHcCCccCCCCceeeEEEEECCCCc--EEEEEeCCCCCCC-------CHHHHHHHHHhcchhhc-
Confidence            679999999999999999998      7999999999994  3344447654321       24567777877764321 


Q ss_pred             CCCCCCceeecCCC
Q 034345           82 SSNQKPSIKWHPQT   95 (97)
Q Consensus        82 ~~~~t~~IKw~~~~   95 (97)
                       ...--+++|++|+
T Consensus       167 -~~~~cp~~w~~g~  179 (197)
T 1qmv_A          167 -HGEVCPAGWKPGS  179 (197)
T ss_dssp             -HCCBBCTTCCTTS
T ss_pred             -cCCccCCCcCcCC
Confidence             1111239998875

>2f9s_A Thiol-disulfide oxidoreductase RESA; thioredoxin-like protein; HET: MSE; 1.40A {Bacillus subtilis} SCOP: c.47.1.10 PDB: 1st9_A 1su9_A 2h1d_A 2h1b_A 2h1a_A 2h19_A 2h1g_A 3c71_A 3c73_A

Probab=98.73  E-value=1.6e-08  Score=66.50  Aligned_cols=64  Identities=16%  Similarity=0.238  Sum_probs=48.6

Q ss_pred             hcceeEEEeChhhHHHHhCCccCceEEEEecCCCCCeeEEEeeecCCCCCCCCCCCcHHHHHHHHHHHHcCCCCCCC
Q 034345            8 FLMWLITLFQSQDVARDFGAACTPEFFLFKKDGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECVLSGQPVSSN   84 (97)
Q Consensus         8 ~~~fpvL~D~~q~va~a~gA~~TPe~fvld~~g~~~~~l~Y~G~IDd~~~~~~~~~t~~~L~~Ai~alLaG~~v~~~   84 (97)
                      .++||++.|.++++++.||...+|.+||+|++|+  +.-+|.|.++           ...|.+.|+.++++...+.+
T Consensus        82 ~~~~~~~~d~~~~~~~~~~v~~~P~~~lid~~G~--i~~~~~G~~~-----------~~~l~~~l~~ll~~~~~~~~  145 (151)
T 2f9s_A           82 GVNFPVVLDTDRQVLDAYDVSPLPTTFLINPEGK--VVKVVTGTMT-----------ESMIHDYMNLIKPGETSGLE  145 (151)
T ss_dssp             TCCSCEEEETTSHHHHHTTCCSSCEEEEECTTSE--EEEEEESCCC-----------HHHHHHHHHHHSCC------
T ss_pred             CCCceEEECCchHHHHhcCCCCCCeEEEECCCCc--EEEEEeCCCC-----------HHHHHHHHHHHHhhhhcccc
Confidence            5689999999999999999999999999999994  3344556532           44899999999988765544

>2bmx_A Alkyl hydroperoxidase C; peroxiredoxin, antioxidant defense system, oxidoreductase, structural proteomics in EURO spine; 2.4A {Mycobacterium tuberculosis} SCOP: c.47.1.10

Probab=98.73  E-value=4.2e-08  Score=68.16  Aligned_cols=73  Identities=10%  Similarity=0.119  Sum_probs=49.0

Q ss_pred             hcceeEEEeChhhHHHHhCCc-----cCceEEEEecCCCCCeeEEEeeecCCCCCCCCCCCcHHHHHHHHHHHHcCCCCC
Q 034345            8 FLMWLITLFQSQDVARDFGAA-----CTPEFFLFKKDGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECVLSGQPVS   82 (97)
Q Consensus         8 ~~~fpvL~D~~q~va~a~gA~-----~TPe~fvld~~g~~~~~l~Y~G~IDd~~~~~~~~~t~~~L~~Ai~alLaG~~v~   82 (97)
                      .++||++.|.+++++++||..     .+|++||||++|+  ++-+|.|..+..       .+...|.++|+++++|..  
T Consensus       105 ~~~~~~~~d~~~~~~~~~~v~~~~g~~~P~~~lid~~G~--i~~~~~g~~~~~-------~~~~~l~~~l~~l~~~~~--  173 (195)
T 2bmx_A          105 TLPFPMLSDIKRELSQAAGVLNADGVADRVTFIVDPNNE--IQFVSATAGSVG-------RNVDEVLRVLDALQSDEL--  173 (195)
T ss_dssp             GCCSCEEECTTSHHHHHHTCBCTTSSBCEEEEEECTTSB--EEEEEEECTTCC-------CCHHHHHHHHHHHHC-----
T ss_pred             CCceeEEeCCchHHHHHhCCcccCCCccceEEEEcCCCe--EEEEEecCCCCC-------CCHHHHHHHHHHHhhCCC--
Confidence            688999999999999999999     9999999999994  344444554222       135689999999998542  


Q ss_pred             CCCCCceeecCCC
Q 034345           83 SNQKPSIKWHPQT   95 (97)
Q Consensus        83 ~~~t~~IKw~~~~   95 (97)
                          .+++|+++.
T Consensus       174 ----~p~~w~~~~  182 (195)
T 2bmx_A          174 ----CASNWRKGD  182 (195)
T ss_dssp             -------------
T ss_pred             ----cCcccccCC
Confidence                237787653

>2b5x_A YKUV protein, TRXY; thioredoxin-like, oxidoreductase; NMR {Bacillus subtilis} SCOP: c.47.1.10 PDB: 2b5y_A

Probab=98.73  E-value=3.5e-08  Score=63.68  Aligned_cols=59  Identities=15%  Similarity=0.262  Sum_probs=47.6

Q ss_pred             hcceeEEEeChhhHHHHhCCccCceEEEEecCCCCCeeEEEeeecCCCCCCCCCCCcHHHHHHHHHHHHcCC
Q 034345            8 FLMWLITLFQSQDVARDFGAACTPEFFLFKKDGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECVLSGQ   79 (97)
Q Consensus         8 ~~~fpvL~D~~q~va~a~gA~~TPe~fvld~~g~~~~~l~Y~G~IDd~~~~~~~~~t~~~L~~Ai~alLaG~   79 (97)
                      .++||++.|..+++++.||...+|++||+|++|+  +.-+|.|..           +...|+++|+.+|+..
T Consensus        89 ~~~~~~~~d~~~~~~~~~~v~~~P~~~lid~~G~--i~~~~~g~~-----------~~~~l~~~l~~~l~~~  147 (148)
T 2b5x_A           89 DITQPIFVDSDHALTDAFENEYVPAYYVFDKTGQ--LRHFQAGGS-----------GMKMLEKRVNRVLAET  147 (148)
T ss_dssp             TCCSCEEECSSCHHHHHTCCCCSSEEEEECTTCB--EEEEEESCS-----------TTHHHHHHHHHHHTTC
T ss_pred             CCCcceEECCchhHHHHhCCCCCCEEEEECCCCc--EEEEecCCC-----------CHHHHHHHHHHHHhcc
Confidence            5789999999999999999999999999999994  333444542           1337999999998764

>3ztl_A Thioredoxin peroxidase; oxidoreductase, reductase, schistosomiasis, thioredoxin fold; 3.00A {Schistosoma mansoni} PDB: 3zvj_A 3zvj_D

Probab=98.71  E-value=3.5e-09  Score=75.87  Aligned_cols=74  Identities=12%  Similarity=0.201  Sum_probs=51.1

Q ss_pred             hcceeEEEeChhhHHHHhCCc------cCceEEEEecCCCCCeeEEEe--eecCCCCCCCCCCCcHHHHHHHHHHHHcCC
Q 034345            8 FLMWLITLFQSQDVARDFGAA------CTPEFFLFKKDGRRPFQLVYH--GQFDDSRPSNNLPVTGRDIRLAIECVLSGQ   79 (97)
Q Consensus         8 ~~~fpvL~D~~q~va~a~gA~------~TPe~fvld~~g~~~~~l~Y~--G~IDd~~~~~~~~~t~~~L~~Ai~alLaG~   79 (97)
                      .++||++.|.+++++++||+.      .+|.+||||++|    +++|+  |..+...          .+++.++.|.+.+
T Consensus       132 ~~~~~~l~D~~~~~~~~ygv~~~~~g~~~P~~~lID~~G----~I~~~~~g~~~~~~----------~~~~il~~l~~l~  197 (222)
T 3ztl_A          132 HMKIPLLADRKQEISKAYGVFDEEDGNAFRGLFIIDPNG----ILRQITINDKPVGR----------SVDETLRLLDAFQ  197 (222)
T ss_dssp             SCSSCEEECSSSHHHHHTTCBCTTTSSBCEEEEEECTTS----EEEEEEEECTTBCC----------CHHHHHHHHHHHH
T ss_pred             ccceeEEeCCchHHHHHcCCeecCCCCccceEEEECCCC----eEEEEEecCCCCCC----------CHHHHHHHHHHhh
Confidence            689999999999999999998      899999999999    56555  5433221          2444444444444


Q ss_pred             CCCCC-CCCceeecCCC
Q 034345           80 PVSSN-QKPSIKWHPQT   95 (97)
Q Consensus        80 ~v~~~-~t~~IKw~~~~   95 (97)
                      .+... ..-+|||++++
T Consensus       198 ~~~~~~~~c~~~w~~~~  214 (222)
T 3ztl_A          198 FVEKHGEVCPVNWKRGQ  214 (222)
T ss_dssp             HHHHHSCBBCTTCCTTS
T ss_pred             cccccCccCCcCcCCCC
Confidence            44221 12239998774

>1we0_A Alkyl hydroperoxide reductase C; peroxiredoxin, AHPC, oxidoreductase; 2.90A {Amphibacillus xylanus} SCOP: c.47.1.10

Probab=98.70  E-value=3.9e-08  Score=67.62  Aligned_cols=78  Identities=14%  Similarity=0.171  Sum_probs=50.5

Q ss_pred             hcceeEEEeChhhHHHHhCCc------cCceEEEEecCCCCCeeEEEeeecCCCCCCCCCCCcHHHHHHHHHHHHcCCCC
Q 034345            8 FLMWLITLFQSQDVARDFGAA------CTPEFFLFKKDGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECVLSGQPV   81 (97)
Q Consensus         8 ~~~fpvL~D~~q~va~a~gA~------~TPe~fvld~~g~~~~~l~Y~G~IDd~~~~~~~~~t~~~L~~Ai~alLaG~~v   81 (97)
                      .++||++.|.+++++++||..      .+|.+||||++|+  ++-+|.|......       +...|.++|+++++.+.-
T Consensus        91 ~~~~~~~~d~~~~~~~~~~v~~~~~g~~~P~~~lid~~G~--i~~~~~g~~~~~~-------~~~~l~~~l~~l~~~~~~  161 (187)
T 1we0_A           91 SIEYIMIGDPSQTISRQFDVLNEETGLADRGTFIIDPDGV--IQAIEINADGIGR-------DASTLINKVKAAQYVREN  161 (187)
T ss_dssp             TCCSEEEECTTCHHHHHTTCEETTTTEECEEEEEECTTSB--EEEEEEECTTSCC-------CTTHHHHHHHHHHHHHTS
T ss_pred             CCCceEEECCchHHHHHhCCCcCCCCceeeEEEEECCCCe--EEEEEecCCCCCC-------CHHHHHHHHHHHhhhhhC
Confidence            588999999999999999999      9999999999994  3444556532211       233788999999875432


Q ss_pred             CCCCCCceeecCCC
Q 034345           82 SSNQKPSIKWHPQT   95 (97)
Q Consensus        82 ~~~~t~~IKw~~~~   95 (97)
                      + ...-+++|.+|+
T Consensus       162 ~-~~~~p~~w~~~~  174 (187)
T 1we0_A          162 P-GEVCPAKWEEGG  174 (187)
T ss_dssp             T-TCCC--------
T ss_pred             C-CcccccccccCC
Confidence            1 122238997764

>2l5o_A Putative thioredoxin; structural genomics, unknown function, PSI-2, protein struct initiative; NMR {Neisseria meningitidis serogroup B}

Probab=98.69  E-value=3.2e-08  Score=64.81  Aligned_cols=64  Identities=19%  Similarity=0.252  Sum_probs=53.2

Q ss_pred             hcceeEEEeChhhHHHHhCCccCceEEEEecCCCCCeeEEEeeecCCCCCCCCCCCcHHHHHHHHHHHHcCCCCCCC
Q 034345            8 FLMWLITLFQSQDVARDFGAACTPEFFLFKKDGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECVLSGQPVSSN   84 (97)
Q Consensus         8 ~~~fpvL~D~~q~va~a~gA~~TPe~fvld~~g~~~~~l~Y~G~IDd~~~~~~~~~t~~~L~~Ai~alLaG~~v~~~   84 (97)
                      .++||++.|...++++.||...+|++||||++|+  +.-+|.|..+           ...|.+.|+.+|.+...+-.
T Consensus        85 ~~~~~~~~d~~~~~~~~~~i~~~P~~~lid~~G~--i~~~~~g~~~-----------~~~l~~~l~~ll~~~~~~~~  148 (153)
T 2l5o_A           85 GLPFTVMYDADKAVGQAFGTQVYPTSVLIGKKGE--ILKTYVGEPD-----------FGKLYQEIDTAWRNSDAEGH  148 (153)
T ss_dssp             TCCSEEEECSSCHHHHHHTCCSSSEEEEECSSSC--CCEEEESSCC-----------HHHHHHHHHHHHHCCSSCCT
T ss_pred             CCCceEEcCchHHHHHHcCCCccCeEEEECCCCc--EEEEEcCCCC-----------HHHHHHHHHHHHHhhhhccc
Confidence            4678999999999999999999999999999996  4567888643           34799999999998766543

>3qpm_A Peroxiredoxin; oxidoreductase, thioredoxin fold, peroxidase; 1.90A {Larimichthys crocea}

Probab=98.69  E-value=3.1e-09  Score=77.68  Aligned_cols=77  Identities=10%  Similarity=0.127  Sum_probs=51.3

Q ss_pred             hcceeEEEeChhhHHHHhCCc------cCceEEEEecCCCCCeeEEEeeecCCCCCCCCCCCcHHHHHHHHHHHHcCCCC
Q 034345            8 FLMWLITLFQSQDVARDFGAA------CTPEFFLFKKDGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECVLSGQPV   81 (97)
Q Consensus         8 ~~~fpvL~D~~q~va~a~gA~------~TPe~fvld~~g~~~~~l~Y~G~IDd~~~~~~~~~t~~~L~~Ai~alLaG~~v   81 (97)
                      .++||++.|.+++++++||+.      .+|.+||||++|    +++|+..-+...     ......+.++|+++-.-.+-
T Consensus       140 ~~~fp~l~D~~~~v~~~ygv~~~~~g~~~p~~flID~~G----~I~~~~~~~~~~-----~~~~~eil~~l~~lq~~~~~  210 (240)
T 3qpm_A          140 PMKIPLLSDLTHQISKDYGVYLEDQGHTLRGLFIIDEKG----VLRQITMNDLPV-----GRSVDETLRLVQAFQYTDKH  210 (240)
T ss_dssp             SCSSCEEECTTSHHHHHTTCEETTTTEECEEEEEECTTS----BEEEEEEECTTB-----CCCHHHHHHHHHHHHHHHHH
T ss_pred             CCceeEEeCchHHHHHHhCCccccCCCccceEEEEcCCC----eEEEEEecCCCC-----CCCHHHHHHHHHHhhhhhhc
Confidence            589999999999999999998      799999999999    677774422221     11233455555554321110


Q ss_pred             CCCCCCceeecCCC
Q 034345           82 SSNQKPSIKWHPQT   95 (97)
Q Consensus        82 ~~~~t~~IKw~~~~   95 (97)
                        ..--+|||++|+
T Consensus       211 --~~~cp~~W~~g~  222 (240)
T 3qpm_A          211 --GEVCPAGWKPGS  222 (240)
T ss_dssp             --SCBBCTTCCTTS
T ss_pred             --CCccCCCCCCCC
Confidence              111238998775

>4g2e_A Peroxiredoxin; redox protein, structural genomics, NPPSFA, national project protein structural and functional analyses; 1.40A {Sulfolobus tokodaii} PDB: 2ywn_A 3hjp_A

Probab=98.68  E-value=5.5e-08  Score=65.98  Aligned_cols=60  Identities=18%  Similarity=0.303  Sum_probs=45.1

Q ss_pred             hcceeEEEeChhhHHHHhCCc-----------cCceEEEEecCCCCCeeEEEeeecCCCCCCCCCCCcHHHHHHHHHHH
Q 034345            8 FLMWLITLFQSQDVARDFGAA-----------CTPEFFLFKKDGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECV   75 (97)
Q Consensus         8 ~~~fpvL~D~~q~va~a~gA~-----------~TPe~fvld~~g~~~~~l~Y~G~IDd~~~~~~~~~t~~~L~~Ai~al   75 (97)
                      .++||+|.|++++++++||+.           ..|.+||||++|    +++|+..-++..  .  ......+.++|++|
T Consensus        86 ~~~~p~l~D~~~~v~~~ygv~~~~~~~~~~~~~~p~tflID~~G----~I~~~~~~~~~~--~--~~~~~eil~~l~~L  156 (157)
T 4g2e_A           86 KLNFTILSDYNREVVKKYNVAWEFPALPGYVLAKRAVFVIDKEG----KVRYKWVSDDPT--K--EPPYDEIEKVVKSL  156 (157)
T ss_dssp             TCCSEEEECTTSHHHHHTTCEEECTTSTTCEEECEEEEEECTTS----BEEEEEEESSTT--C--CCCHHHHHHHHHHT
T ss_pred             CCcEEEEEcCCcHHHHHcCCccccccCCCcceeeeeEEEECCCC----EEEEEEECCCCC--C--CCCHHHHHHHHHHh
Confidence            578999999999999999974           478899999999    688876544432  1  11244677777765

>3ha9_A Uncharacterized thioredoxin-like protein; PSI, MCSG, structural G midwest center for structural genomics, protein structure initiative; 1.70A {Aeropyrum pernix}

Probab=98.66  E-value=2.6e-08  Score=66.48  Aligned_cols=54  Identities=15%  Similarity=0.380  Sum_probs=44.4

Q ss_pred             ceeEEEeChhhHHHHhCCccCceEEEEecCCCCCeeEEEeeecCCCCCCCCCCCcHHHHHHHHHHHHcC
Q 034345           10 MWLITLFQSQDVARDFGAACTPEFFLFKKDGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECVLSG   78 (97)
Q Consensus        10 ~fpvL~D~~q~va~a~gA~~TPe~fvld~~g~~~~~l~Y~G~IDd~~~~~~~~~t~~~L~~Ai~alLaG   78 (97)
                      +||++.| ++++++.||...+|++||||++|    ++++.|.+.          +...|++.|++++.|
T Consensus       112 ~~~~~~d-~~~~~~~~~v~~~P~~~lid~~G----~i~~~g~~~----------~~~~l~~~l~~l~~g  165 (165)
T 3ha9_A          112 SWIMVMD-DGSLVEKFNVRSIDYIVIMDKSS----NVLYAGTTP----------SLGELESVIKSVQGG  165 (165)
T ss_dssp             TSEEEEC-CSHHHHHTTCCSSSEEEEEETTC----CEEEEEESC----------CHHHHHHHHHHC---
T ss_pred             CeeEEeC-hHHHHHHhCCCCceEEEEEcCCC----cEEEeCCCC----------CHHHHHHHHHHHhcC
Confidence            8999999 99999999999999999999999    577777762          133799999998875

>2v2g_A Peroxiredoxin 6; oxidoreductase, antioxidant enzymes; 1.60A {Arenicola marina} PDB: 2v32_A 2v41_A

Probab=98.62  E-value=2.6e-08  Score=73.03  Aligned_cols=77  Identities=13%  Similarity=0.192  Sum_probs=54.2

Q ss_pred             hcceeEEEeChhhHHHHhCCc------------cCceEEEEecCCCCCeeEEEeeecCCCCCCCCCCCcHHHHHHHHHHH
Q 034345            8 FLMWLITLFQSQDVARDFGAA------------CTPEFFLFKKDGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECV   75 (97)
Q Consensus         8 ~~~fpvL~D~~q~va~a~gA~------------~TPe~fvld~~g~~~~~l~Y~G~IDd~~~~~~~~~t~~~L~~Ai~al   75 (97)
                      .++||++.|.+++++++||+.            .+|.+||||++|    +|+++-.-+....     .+..++.++|++|
T Consensus        93 ~~~fpil~D~~~~va~~ygv~~~~~~~~~g~~~~~p~~fiID~~G----~I~~~~~~~~~~g-----r~~~eilr~l~~L  163 (233)
T 2v2g_A           93 DMPYPIIADETRELAVKLGMVDPDERTSTGMPLTCRAVFIIGPDK----KLKLSILYPATTG-----RNFSEILRVIDSL  163 (233)
T ss_dssp             SCSSCEEECTTCHHHHHTTCEEEEEECTTCCEEECEEEEEECTTS----BEEEEEEECTTBC-----CCHHHHHHHHHHH
T ss_pred             CCceEEEECChHHHHHHhCCcCcccccCCCcccccceEEEECCCC----EEEEEEecCCCCC-----CCHHHHHHHHHHH
Confidence            679999999999999999975            689999999999    4555433222211     1355788899998


Q ss_pred             HcCCCCCCCCCCceeecCCC
Q 034345           76 LSGQPVSSNQKPSIKWHPQT   95 (97)
Q Consensus        76 LaG~~v~~~~t~~IKw~~~~   95 (97)
                      .....-  ...-+++|++|+
T Consensus       164 q~~~~~--~~~~p~~W~~g~  181 (233)
T 2v2g_A          164 QLTAQK--KVATPADWQPGD  181 (233)
T ss_dssp             HHHHHS--SEEBCTTCCTTS
T ss_pred             HhhccC--CccCCCCcCcCC
Confidence            876432  111228888764

>3tjj_A Peroxiredoxin-4; thioredoxin fold, sulfenylation, endoplasmic reticulum, oxidoreductase; HET: CSO; 1.91A {Homo sapiens} PDB: 3tjk_A 3tjb_A 3tjf_A 3tjg_A 3tkq_A 3tkp_A 3tks_A 3tkr_A 3tks_C

Probab=98.60  E-value=7.5e-09  Score=76.63  Aligned_cols=77  Identities=10%  Similarity=0.133  Sum_probs=44.4

Q ss_pred             hcceeEEEeChhhHHHHhCCc------cCceEEEEecCCCCCeeEEEeeecCCCCCCCCCCCcHHHHHHHHHHHHcCCCC
Q 034345            8 FLMWLITLFQSQDVARDFGAA------CTPEFFLFKKDGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECVLSGQPV   81 (97)
Q Consensus         8 ~~~fpvL~D~~q~va~a~gA~------~TPe~fvld~~g~~~~~l~Y~G~IDd~~~~~~~~~t~~~L~~Ai~alLaG~~v   81 (97)
                      .++||+|.|.+++++++||+.      .+|.+||||++|    +|+|+..-+...     ......+.++|+++-...+-
T Consensus       154 ~~~fp~l~D~~~~va~~ygv~~~~~g~~~p~tflID~~G----~I~~~~~~~~~~-----~~~~~eil~~L~alq~~~~~  224 (254)
T 3tjj_A          154 PIRIPLLSDLTHQISKDYGVYLEDSGHTLRGLFIIDDKG----ILRQITLNDLPV-----GRSVDETLRLVQAFQYTDKH  224 (254)
T ss_dssp             SCSSCEEECTTSHHHHHHTCEETTTTEECEEEEEECTTS----BEEEEEEECTTC-----CCCHHHHHHHHHHHHHHHHH
T ss_pred             ccccceeeCcHHHHHHHcCCccccCCCccceEEEECCCC----eEEEEEecCCCC-----CCCHHHHHHHHHhhcccccc
Confidence            589999999999999999986      689999999999    677764433221     11233555555554322111


Q ss_pred             CCCCCCceeecCCC
Q 034345           82 SSNQKPSIKWHPQT   95 (97)
Q Consensus        82 ~~~~t~~IKw~~~~   95 (97)
                        ...-+|||++|+
T Consensus       225 --~~~cp~~W~~g~  236 (254)
T 3tjj_A          225 --GEVAPAGWKPGS  236 (254)
T ss_dssp             --C-----------
T ss_pred             --CccccCCCCCCC
Confidence              112249999875

>3gl3_A Putative thiol:disulfide interchange protein DSBE; oxidoreductase, PSI-II, structural genomics, protein structure initiative; 2.09A {Chlorobium tepidum tls}

Probab=98.59  E-value=1.5e-07  Score=61.51  Aligned_cols=65  Identities=17%  Similarity=0.226  Sum_probs=47.8

Q ss_pred             hcceeEEEeChhhHHHHhCCccCceEEEEecCCCCCeeEEEeeecCCCCCCCCCCCcHHHHHHHHHHHHcCCCCCC
Q 034345            8 FLMWLITLFQSQDVARDFGAACTPEFFLFKKDGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECVLSGQPVSS   83 (97)
Q Consensus         8 ~~~fpvL~D~~q~va~a~gA~~TPe~fvld~~g~~~~~l~Y~G~IDd~~~~~~~~~t~~~L~~Ai~alLaG~~v~~   83 (97)
                      .++||++.|.++++++.||...+|.+||||++|+  +..++.|....         +...|++.|++++.+.+-+.
T Consensus        84 ~~~~~~~~d~~~~~~~~~~v~~~P~~~lid~~G~--i~~~~~g~~~~---------~~~~l~~~i~~~~~~~~~~~  148 (152)
T 3gl3_A           84 PAEFTVAFDPKGQTPRLYGVKGMPTSFLIDRNGK--VLLQHVGFRPA---------DKEALEQQILAALGGNEGHH  148 (152)
T ss_dssp             CCCSEEEECTTCHHHHHTTCCSSSEEEEECTTSB--EEEEEESCCTT---------THHHHHHHHHHHTC------
T ss_pred             CCCCceeECCcchhHHHcCCCCCCeEEEECCCCC--EEEEEccCCCc---------CHHHHHHHHHHHHccccccc
Confidence            4689999999999999999999999999999994  33445554222         24589999999988866543

>1zof_A Alkyl hydroperoxide-reductase; decamer, toroide-shaped complex, oxidoreductase; 2.95A {Helicobacter pylori} SCOP: c.47.1.10

Probab=98.58  E-value=1e-07  Score=66.18  Aligned_cols=77  Identities=9%  Similarity=0.142  Sum_probs=50.4

Q ss_pred             hhcceeEEEeChhhHHHHhCCc-----cCceEEEEecCCCCCeeEEEeeecCCCCCCCCCCCcHHHHHHHHHHHHcCCCC
Q 034345            7 LFLMWLITLFQSQDVARDFGAA-----CTPEFFLFKKDGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECVLSGQPV   81 (97)
Q Consensus         7 ~~~~fpvL~D~~q~va~a~gA~-----~TPe~fvld~~g~~~~~l~Y~G~IDd~~~~~~~~~t~~~L~~Ai~alLaG~~v   81 (97)
                      ..++||++.|.+++++++||..     .+|+.||||++|+  ++-++.|.++..       .+...|.++|+++...++-
T Consensus        95 ~~~~~~~~~d~~~~~~~~~~v~~~~g~~~P~~~lid~~G~--i~~~~~g~~~~~-------~~~~~l~~~l~~l~~~~~~  165 (198)
T 1zof_A           95 GQVSFPMVADITKSISRDYDVLFEEAIALRGAFLIDKNMK--VRHAVINDLPLG-------RNADEMLRMVDALLHFEEH  165 (198)
T ss_dssp             CCCSSCEEECTTSHHHHHTTCEETTTEECEEEEEEETTTE--EEEEEEESSSCC-------CHHHHHHHHHHHHHHHHSS
T ss_pred             cCceeEEEECCchHHHHHhCCcccCCcccceEEEECCCCE--EEEEEecCCCCC-------CCHHHHHHHHHHHHHhhcc
Confidence            4678999999999999999999     9999999999994  333444543322       1356888999998853321


Q ss_pred             CCCCCCceeecCC
Q 034345           82 SSNQKPSIKWHPQ   94 (97)
Q Consensus        82 ~~~~t~~IKw~~~   94 (97)
                        ..--+.+|.++
T Consensus       166 --~~~~p~~w~~~  176 (198)
T 1zof_A          166 --GEVCPAGWRKG  176 (198)
T ss_dssp             --CCCCC------
T ss_pred             --CCccCCcCcCC
Confidence              11112677654

>1xcc_A 1-Cys peroxiredoxin; unknown function, structural genomics, structural genomics consortium, SGC; 2.30A {Plasmodium yoelii} SCOP: c.47.1.10 PDB: 3tb2_A

Probab=98.57  E-value=5.2e-08  Score=70.32  Aligned_cols=78  Identities=8%  Similarity=0.077  Sum_probs=54.1

Q ss_pred             hhcceeEEEeChhhHHHHhCCc------------cCceEEEEecCCCCCeeEEEeeecCCCCCCCCCCCcHHHHHHHHHH
Q 034345            7 LFLMWLITLFQSQDVARDFGAA------------CTPEFFLFKKDGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIEC   74 (97)
Q Consensus         7 ~~~~fpvL~D~~q~va~a~gA~------------~TPe~fvld~~g~~~~~l~Y~G~IDd~~~~~~~~~t~~~L~~Ai~a   74 (97)
                      ..++||++.|.+++++++||+.            .+|.+||||++|+  ++..+.|.....       .+...+.++|++
T Consensus        93 ~~~~fpil~D~~~~va~~ygv~~~~~~~~~g~~~~~p~~flID~~G~--I~~~~~~~~~~g-------~~~~ell~~i~~  163 (220)
T 1xcc_A           93 NKWEIPIVCDESRELANKLKIMDEQEKDITGLPLTCRCLFFISPEKK--IKATVLYPATTG-------RNAHEILRVLKS  163 (220)
T ss_dssp             SCCCCCEEECTTSHHHHHHTCEEEEEECTTSCEEECEEEEEECTTSB--EEEEEEECTTBC-------CCHHHHHHHHHH
T ss_pred             CCCcceeEECchhHHHHHhCCCCcccccCCCCCcccceEEEECCCCE--EEEEEecCCCCC-------CCHHHHHHHHHH
Confidence            3678999999999999999984            5899999999994  344444433211       135578888999


Q ss_pred             HHcCCCCCCCCCCceeecCCC
Q 034345           75 VLSGQPVSSNQKPSIKWHPQT   95 (97)
Q Consensus        75 lLaG~~v~~~~t~~IKw~~~~   95 (97)
                      |....+-  ...-+++|++|.
T Consensus       164 lq~~~~~--~~~~p~~w~~g~  182 (220)
T 1xcc_A          164 LQLTYTT--PVATPVNWNEGD  182 (220)
T ss_dssp             HHHHHHS--SEEBCTTCCTTS
T ss_pred             HHhhhcC--CcccCCCcCcCC
Confidence            8765432  111227787764

>3kcm_A Thioredoxin family protein; SGX, thioredoxin protein, PSI, structural genomics, protein initiative; 2.45A {Geobacter metallireducens gs-15}

Probab=98.57  E-value=8.4e-08  Score=62.87  Aligned_cols=65  Identities=15%  Similarity=0.181  Sum_probs=46.5

Q ss_pred             hcceeEEEeChhhHHHHhCCccCceEEEEecCCCCCeeEEEeeecCCCCCCCCCCCcHHHHHHHHHHHHcCCCCCC
Q 034345            8 FLMWLITLFQSQDVARDFGAACTPEFFLFKKDGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECVLSGQPVSS   83 (97)
Q Consensus         8 ~~~fpvL~D~~q~va~a~gA~~TPe~fvld~~g~~~~~l~Y~G~IDd~~~~~~~~~t~~~L~~Ai~alLaG~~v~~   83 (97)
                      .++||++.|.++.+++.||...+|.+||||++|+  +.-+|.|..+..         ...+.+.|+++..+.+.+.
T Consensus        85 ~~~~~~~~d~~~~~~~~~~v~~~P~~~lid~~G~--i~~~~~g~~~~~---------~~~l~~~l~~l~~~~~~~~  149 (154)
T 3kcm_A           85 GFTLPVLLDADKRVGKLYGTTGVPETFVIDRHGV--ILKKVVGAMEWD---------HPEVIAFLNNELSKAREGH  149 (154)
T ss_dssp             CCCCCEEECTTCHHHHHHTCCSBCEEEEECTTSB--EEEEEESCCCTT---------SHHHHHHHHTC--------
T ss_pred             CCCeeEEecCchHHHHHhCCCCCCeEEEECCCCc--EEEEEcCCCccc---------cHHHHHHHHHHHHHhhhcc
Confidence            5789999999999999999999999999999994  344555764433         2378899988888766554

>1lu4_A Soluble secreted antigen MPT53; thioredoxin-like fold, structural genomics, PSI, protein structure initiative; 1.12A {Mycobacterium tuberculosis} SCOP: c.47.1.10

Probab=98.54  E-value=9.8e-08  Score=60.87  Aligned_cols=55  Identities=9%  Similarity=0.168  Sum_probs=44.7

Q ss_pred             hcceeEEEeChhhHHHHhCCccCceEEEEecCCCCCeeEEEe---eecCCCCCCCCCCCcHHHHHHHHHHHH
Q 034345            8 FLMWLITLFQSQDVARDFGAACTPEFFLFKKDGRRPFQLVYH---GQFDDSRPSNNLPVTGRDIRLAIECVL   76 (97)
Q Consensus         8 ~~~fpvL~D~~q~va~a~gA~~TPe~fvld~~g~~~~~l~Y~---G~IDd~~~~~~~~~t~~~L~~Ai~alL   76 (97)
                      .++||++.|+.+++++.||...+|.+||+|++|+  +. +|.   |..+           ...|++.|++++
T Consensus        78 ~~~~~~~~d~~~~~~~~~~i~~~P~~~lid~~G~--i~-~~~~~~g~~~-----------~~~l~~~l~~ll  135 (136)
T 1lu4_A           78 NLNFTNLNDADGVIWARYNVPWQPAFVFYRADGT--ST-FVNNPTAAMS-----------QDELSGRVAALT  135 (136)
T ss_dssp             TCCSEEEECTTSHHHHHTTCCSSSEEEEECTTSC--EE-EECCSSSCCC-----------HHHHHHHHHHC-
T ss_pred             CCCceEEECCchhHHHhcCCCCCCEEEEECCCCc--EE-EEEcCCCccC-----------HHHHHHHHHHHh
Confidence            5689999999999999999999999999999995  33 566   5432           447888888776

>2lrn_A Thiol:disulfide interchange protein; structural genomics, thioredoxin-like, NEW YORK structural G research consortium, oxidoreductase; NMR {Bacteroides SP}

Probab=98.51  E-value=6.4e-07  Score=59.03  Aligned_cols=61  Identities=21%  Similarity=0.388  Sum_probs=51.1

Q ss_pred             hcceeEEEeC---hhhHHHHhCCccCceEEEEecCCCCCeeEEEeeecCCCCCCCCCCCcHHHHHHHHHHHHcCCCCCCC
Q 034345            8 FLMWLITLFQ---SQDVARDFGAACTPEFFLFKKDGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECVLSGQPVSSN   84 (97)
Q Consensus         8 ~~~fpvL~D~---~q~va~a~gA~~TPe~fvld~~g~~~~~l~Y~G~IDd~~~~~~~~~t~~~L~~Ai~alLaG~~v~~~   84 (97)
                      .++||++.|.   .++++++||...+|.+||||++|    +++++. ++           ...|++.|+.++++.....+
T Consensus        85 ~~~~~~~~d~~~~~~~~~~~~~v~~~P~~~lid~~G----~i~~~~-~~-----------~~~l~~~l~~l~~~~~~~~~  148 (152)
T 2lrn_A           85 KSYWNQVLLQKDDVKDVLESYCIVGFPHIILVDPEG----KIVAKE-LR-----------GDDLYNTVEKFVNGAKEGHH  148 (152)
T ss_dssp             TCCSEEEEECHHHHHHHHHHTTCCSSCEEEEECTTS----EEEEEC-CC-----------TTHHHHHHHHHHTSSSSCCS
T ss_pred             CCCCeEEecccchhHHHHHHhCCCcCCeEEEECCCC----eEEEee-CC-----------HHHHHHHHHHHHhhcccccc
Confidence            5789999999   79999999999999999999999    788775 21           12799999999998766544

>1zzo_A RV1677; thioredoxin fold, structural genomics, PSI, protein structure initiative, TB structural genomics consortium, TBSGC; 1.60A {Mycobacterium tuberculosis} SCOP: c.47.1.10 PDB: 3ios_A

Probab=98.51  E-value=1.5e-07  Score=59.70  Aligned_cols=54  Identities=15%  Similarity=0.293  Sum_probs=45.5

Q ss_pred             ceeEEEeChhhHHHHhCCccCceEEEEecCCCCCeeEEEeeecCCCCCCCCCCCcHHHHHHHHHHHHc
Q 034345           10 MWLITLFQSQDVARDFGAACTPEFFLFKKDGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECVLS   77 (97)
Q Consensus        10 ~fpvL~D~~q~va~a~gA~~TPe~fvld~~g~~~~~l~Y~G~IDd~~~~~~~~~t~~~L~~Ai~alLa   77 (97)
                      +||++.|.++++++.||...+|.+||+|++|+  +. +|.|..+           ...|.+.|+++++
T Consensus        82 ~~~~~~d~~~~~~~~~~i~~~P~~~~id~~g~--i~-~~~g~~~-----------~~~l~~~l~~~l~  135 (136)
T 1zzo_A           82 TFTQLADTDGSVWANFGVTQQPAYAFVDPHGN--VD-VVRGRMS-----------QDELTRRVTALTS  135 (136)
T ss_dssp             TSEEEECTTCHHHHHTTCCSSSEEEEECTTCC--EE-EEESCCC-----------HHHHHHHHHHHC-
T ss_pred             ceEEEEcCCcHHHHHcCCCCCceEEEECCCCC--EE-EEecCCC-----------HHHHHHHHHHHhc
Confidence            89999999999999999999999999999995  34 7888643           3478888888764

>1prx_A HORF6; peroxiredoxin, hydrogen peroxide, redox regulation, cellular signaling, antioxidant; 2.00A {Homo sapiens} SCOP: c.47.1.10

Probab=98.51  E-value=7.4e-08  Score=69.69  Aligned_cols=78  Identities=13%  Similarity=0.105  Sum_probs=53.2

Q ss_pred             hhcceeEEEeChhhHHHHhCCc------------cCceEEEEecCCCCCeeEEEeeecCCCCCCCCCCCcHHHHHHHHHH
Q 034345            7 LFLMWLITLFQSQDVARDFGAA------------CTPEFFLFKKDGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIEC   74 (97)
Q Consensus         7 ~~~~fpvL~D~~q~va~a~gA~------------~TPe~fvld~~g~~~~~l~Y~G~IDd~~~~~~~~~t~~~L~~Ai~a   74 (97)
                      ..++||++.|.+++++++||..            .+|.+||||++|+  ++..+.|.....       .+...+.++|++
T Consensus        96 ~~~~fpil~D~~~~va~~ygv~~~~~~~~~g~~~~~p~~fiID~~G~--I~~~~~~~~~~g-------r~~~eil~~i~~  166 (224)
T 1prx_A           96 EKLPFPIIDDRNRELAILLGMLDPAEKDEKGMPVTARVVFVFGPDKK--LKLSILYPATTG-------RNFDEILRVVIS  166 (224)
T ss_dssp             SCCSSCEEECTTCHHHHHTTSSCSCTTCSSSCCTTCCEEEEECTTSB--EEEEEECCTTBC-------CCHHHHHHHHHH
T ss_pred             cCcCcceeecCchHHHHHhCCCCcccccCCCccccceEEEEECCCCE--EEEEEecCCCCC-------CCHHHHHHHHHH
Confidence            4689999999999999999974            4799999999994  333444432211       135578888999


Q ss_pred             HHcCCCCCCCCCCceeecCCC
Q 034345           75 VLSGQPVSSNQKPSIKWHPQT   95 (97)
Q Consensus        75 lLaG~~v~~~~t~~IKw~~~~   95 (97)
                      |.....-.  ..-+++|++|+
T Consensus       167 l~~~~~~~--~~~p~~W~~g~  185 (224)
T 1prx_A          167 LQLTAEKR--VATPVDWKDGD  185 (224)
T ss_dssp             HHHHHHHC--EEBCTTCCTTS
T ss_pred             HHhhccCC--cCCCCCCCCCC
Confidence            88753221  11126777664

>4gqc_A Thiol peroxidase, peroxiredoxin Q; CXXXXC motif, fully folded, locally unfolded, peroxide, DTT, structural genomics, riken; 2.00A {Aeropyrum pernix} PDB: 2cx3_A 2cx4_A 4gqf_A

Probab=98.49  E-value=5e-07  Score=61.90  Aligned_cols=61  Identities=15%  Similarity=0.180  Sum_probs=43.4

Q ss_pred             hhcceeEEEeChhhHHHHhCCc----------cCceEEEEecCCCCCeeEEEeeecCCCCCCCCCCCcHHHHHHHHHHH
Q 034345            7 LFLMWLITLFQSQDVARDFGAA----------CTPEFFLFKKDGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECV   75 (97)
Q Consensus         7 ~~~~fpvL~D~~q~va~a~gA~----------~TPe~fvld~~g~~~~~l~Y~G~IDd~~~~~~~~~t~~~L~~Ai~al   75 (97)
                      ..++||+|.|++++++++||+.          ..|.+||||++|    +++|+-.-++..  +.  .....+-++|++|
T Consensus        88 ~~~~fp~l~D~~~~v~~~ygv~~~~~~~~~~~~~p~tflID~~G----~I~~~~~~~~~~--~~--~~~~eil~~l~~l  158 (164)
T 4gqc_A           88 NRLAFNLLSDYNREVIKLYNVYHEDLKGLKMVAKRAVFIVKPDG----TVAYKWVTDNPL--NE--PDYDEVVREANKI  158 (164)
T ss_dssp             TTCCSEEEECTTSHHHHHTTCEEEEETTEEEEECCEEEEECTTS----BEEEEEECSCTT--CC--CCHHHHHHHHHHH
T ss_pred             cCcccceeecCchHHHHHcCCcccccccCcCCeeeEEEEECCCC----EEEEEEEeCCCC--CC--CCHHHHHHHHHHH
Confidence            3679999999999999999974          478999999999    788875433331  11  1233455556554

>4evm_A Thioredoxin family protein; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.51A {Streptococcus pneumoniae}

Probab=98.46  E-value=2.5e-07  Score=58.29  Aligned_cols=53  Identities=13%  Similarity=0.206  Sum_probs=42.6

Q ss_pred             ceeEEEeChhhHHHHhCCccCceEEEEecCCCCCeeEEEeeecCCCCCCCCCCCcHHHHHHHHHHH
Q 034345           10 MWLITLFQSQDVARDFGAACTPEFFLFKKDGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECV   75 (97)
Q Consensus        10 ~fpvL~D~~q~va~a~gA~~TPe~fvld~~g~~~~~l~Y~G~IDd~~~~~~~~~t~~~L~~Ai~al   75 (97)
                      +||++.|+++++++.||...+|.+||+|++|+  +.-+|.|..+           ...|.+.|+++
T Consensus        85 ~~~~~~d~~~~~~~~~~v~~~P~~~lid~~G~--i~~~~~g~~~-----------~~~l~~~l~~l  137 (138)
T 4evm_A           85 NLPVLVDPSGKLLETYGVRSYPTQAFIDKEGK--LVKTHPGFME-----------KDAILQTLKEL  137 (138)
T ss_dssp             TCCEEECTTCHHHHHTTCCSSSEEEEECTTCC--EEEEEESCCC-----------HHHHHHHHHHC
T ss_pred             CeeEEECcchHHHHHcCcccCCeEEEECCCCc--EEEeecCCCc-----------HHHHHHHHHhh
Confidence            89999999999999999999999999999995  4445565432           34677777654

>3raz_A Thioredoxin-related protein; structural genomics, PSI-2, protein structure initiative; 2.00A {Neisseria meningitidis serogroup B}

Probab=98.45  E-value=2.6e-07  Score=60.87  Aligned_cols=63  Identities=11%  Similarity=0.171  Sum_probs=46.9

Q ss_pred             hcceeEEEeC---hhhHHHHhC--CccCceEEEEecCCCCCeeEEEeeecCCCCCCCCCCCcHHHHHHHHHHHHcCCCCC
Q 034345            8 FLMWLITLFQ---SQDVARDFG--AACTPEFFLFKKDGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECVLSGQPVS   82 (97)
Q Consensus         8 ~~~fpvL~D~---~q~va~a~g--A~~TPe~fvld~~g~~~~~l~Y~G~IDd~~~~~~~~~t~~~L~~Ai~alLaG~~v~   82 (97)
                      .++||++.|.   ..+++++||  ...+|+.||||++|+  ++-+|.|.++           ...|+++|+.++++++-+
T Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~--i~~~~~g~~~-----------~~~l~~~l~~l~~~~~~~  145 (151)
T 3raz_A           79 PVSYPIWRYTGANSRNFMKTYGNTVGVLPFTVVEAPKCG--YRQTITGEVN-----------EKSLTDAVKLAHSKCREG  145 (151)
T ss_dssp             CCSSCEEEECCSCHHHHHHTTTCCSCCSSEEEEEETTTT--EEEECCSCCC-----------HHHHHHHHHHHHTC----
T ss_pred             CCCCceEecCccchHHHHHHhCCccCCCCEEEEECCCCc--EEEEECCCCC-----------HHHHHHHHHHHHHHhhcc
Confidence            5689999887   466889999  899999999999995  4445556542           448999999999987654


Q ss_pred             C
Q 034345           83 S   83 (97)
Q Consensus        83 ~   83 (97)
                      .
T Consensus       146 ~  146 (151)
T 3raz_A          146 H  146 (151)
T ss_dssp             -
T ss_pred             c
Confidence            3

>3a2v_A Probable peroxiredoxin; thioredoxin peroxidase, hydrogen peroxide, antioxidant, oxidoreductase, redox-active center; 1.65A {Aeropyrum pernix} PDB: 1x0r_A 2zct_A 2nvl_A 2e2g_A 2cv4_A* 3a5w_A 2e2m_A 3a2x_A 3a2w_A

Probab=98.44  E-value=1.8e-07  Score=69.57  Aligned_cols=74  Identities=15%  Similarity=0.192  Sum_probs=53.9

Q ss_pred             hcceeEEEeChhhHHHHhCCc-------cCceEEEEecCCCCCeeEEEeeecCCCCCCCCCCCcHHHHHHHHHHHHcCCC
Q 034345            8 FLMWLITLFQSQDVARDFGAA-------CTPEFFLFKKDGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECVLSGQP   80 (97)
Q Consensus         8 ~~~fpvL~D~~q~va~a~gA~-------~TPe~fvld~~g~~~~~l~Y~G~IDd~~~~~~~~~t~~~L~~Ai~alLaG~~   80 (97)
                      .++||++.|.+++++++||+.       .+|.+||||++|    +++++..-+....     .+..++..+|+++.....
T Consensus        95 ~i~fPil~D~~~~ia~~ygv~~~~~g~~~~p~~fIID~dG----~I~~~~~~~~~~g-----r~~~Ellr~I~alq~~~~  165 (249)
T 3a2v_A           95 RIPFPIIADPQGTVARRLGLLHAESATHTVRGVFIVDARG----VIRTMLYYPMELG-----RLVDEILRIVKALKLGDS  165 (249)
T ss_dssp             CCCSCEEECTTSHHHHHHTCCCTTCSSSCCEEEEEECTTS----BEEEEEEECTTBC-----CCHHHHHHHHHHHHHHHH
T ss_pred             CCceeEEECCchHHHHHhCCccccCCCcccceEEEECCCC----eEEEEEecCCccc-----chhHHHHHHHHHHHhccc
Confidence            689999999999999999987       899999999999    5666543332211     135688999999886542


Q ss_pred             CCCCCCCceeecC
Q 034345           81 VSSNQKPSIKWHP   93 (97)
Q Consensus        81 v~~~~t~~IKw~~   93 (97)
                      -  ...-+++| +
T Consensus       166 ~--~~~~Pa~W-~  175 (249)
T 3a2v_A          166 L--KRAVPADW-P  175 (249)
T ss_dssp             H--TCBBCTTT-T
T ss_pred             c--CccCCCCC-C
Confidence            2  11222677 6

>3drn_A Peroxiredoxin, bacterioferritin comigratory prote homolog; bacterioferritin comigratory protein, oxidore; HET: CIT; 2.15A {Sulfolobus solfataricus} SCOP: c.47.1.0

Probab=98.42  E-value=5.6e-07  Score=60.38  Aligned_cols=62  Identities=15%  Similarity=0.248  Sum_probs=46.0

Q ss_pred             hcceeEEEeChhhHHHHhCCcc----CceEEEEecCCCCCeeEEEeeecCCCCCCCCCCCcHHHHHHHHHHHHcC
Q 034345            8 FLMWLITLFQSQDVARDFGAAC----TPEFFLFKKDGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECVLSG   78 (97)
Q Consensus         8 ~~~fpvL~D~~q~va~a~gA~~----TPe~fvld~~g~~~~~l~Y~G~IDd~~~~~~~~~t~~~L~~Ai~alLaG   78 (97)
                      .++||++.|.+++++++||+..    +|.+||||++|+  ++-+|.|.++...       ....+.++|+++-.+
T Consensus        85 ~~~~~~~~d~~~~~~~~~~v~~~~~~~P~~~lid~~G~--i~~~~~g~~~~~~-------~~~~il~~l~~l~~~  150 (161)
T 3drn_A           85 KLPFILVSDPDKKIRELYGAKGFILPARITFVIDKKGI--IRHIYNSQMNPAN-------HVNEALKALKQIKEE  150 (161)
T ss_dssp             TCCSEEEECTTSHHHHHTTCCCSSSCCCEEEEECTTSB--EEEEEECSSCTTH-------HHHHHHHHHHHHHHH
T ss_pred             CCCceEEECCcHHHHHHcCCCCcCcccceEEEECCCCE--EEEEEecCCCCCc-------CHHHHHHHHHHhhhh
Confidence            5789999999999999999998    999999999995  4446666544331       233555666665443

>3ia1_A THIO-disulfide isomerase/thioredoxin; oxidoreductase, PSI-2, NYSGXRC, structu genomics, protein structure initiative; 1.76A {Thermus thermophilus}

Probab=98.41  E-value=1.4e-07  Score=61.99  Aligned_cols=62  Identities=13%  Similarity=0.130  Sum_probs=48.3

Q ss_pred             hcceeEEEe---ChhhHHHHhCCccCceEEEEecCCCCCeeEEEeeecCCCCCCCCCCCcHHHHHHHHHHHHcCCCCC
Q 034345            8 FLMWLITLF---QSQDVARDFGAACTPEFFLFKKDGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECVLSGQPVS   82 (97)
Q Consensus         8 ~~~fpvL~D---~~q~va~a~gA~~TPe~fvld~~g~~~~~l~Y~G~IDd~~~~~~~~~t~~~L~~Ai~alLaG~~v~   82 (97)
                      .++||++.|   ..+.+++.||...+|.+||||++|+  +.-+|.|..           +...|++.|+.++.+++-.
T Consensus        85 ~~~~~~~~d~~~~~~~~~~~~~v~~~P~~~lid~~G~--i~~~~~g~~-----------~~~~l~~~l~~~~~~~~~~  149 (154)
T 3ia1_A           85 PRFIPLLASDRDRPHEVAARFKVLGQPWTFVVDREGK--VVALFAGRA-----------GREALLDALLLAGADLEGH  149 (154)
T ss_dssp             TTEEECBCCSSCCHHHHHTTSSBCSSCEEEEECTTSE--EEEEEESBC-----------CHHHHHHHHHHTTCCC---
T ss_pred             CCCcccccccccchHHHHHHhCCCcccEEEEECCCCC--EEEEEcCCC-----------CHHHHHHHHHhccCccccc
Confidence            468999998   8999999999999999999999994  344455543           2448999999998887644

>3gkn_A Bacterioferritin comigratory protein; BCP, PRX, atypical 2-Cys, oxidoreduc; HET: BIH; 1.47A {Xanthomonas campestris PV} PDB: 3gkk_A 3gkm_A

Probab=98.38  E-value=7.9e-07  Score=59.22  Aligned_cols=59  Identities=14%  Similarity=0.101  Sum_probs=43.1

Q ss_pred             hcceeEEEeChhhHHHHhCCcc------------CceEEEEecCCCCCeeEEEeeecCCCCCCCCCCCcHHHHHHHHHHH
Q 034345            8 FLMWLITLFQSQDVARDFGAAC------------TPEFFLFKKDGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECV   75 (97)
Q Consensus         8 ~~~fpvL~D~~q~va~a~gA~~------------TPe~fvld~~g~~~~~l~Y~G~IDd~~~~~~~~~t~~~L~~Ai~al   75 (97)
                      .++||++.|.+++++++||...            +|.+||||++|    +++|+- -+...     ......+.++|+++
T Consensus        91 ~~~~~~~~d~~~~~~~~~~v~~~~~~~~~~~~~~~p~~~lid~~G----~i~~~~-~~~~~-----~~~~~~il~~l~~l  160 (163)
T 3gkn_A           91 GFAFPLVSDGDEALCRAFDVIKEKNMYGKQVLGIERSTFLLSPEG----QVVQAW-RKVKV-----AGHADAVLAALKAH  160 (163)
T ss_dssp             CCSSCEEECTTCHHHHHTTCEEEEEETTEEEEEECCEEEEECTTS----CEEEEE-CSCCS-----TTHHHHHHHHHHHH
T ss_pred             CCCceEEECCcHHHHHHhCCccccccccccccCcceEEEEECCCC----eEEEEE-cCCCc-----ccCHHHHHHHHHHH
Confidence            5789999999999999999987            99999999999    566554 11111     11234566666665


Q ss_pred             H
Q 034345           76 L   76 (97)
Q Consensus        76 L   76 (97)
                      .
T Consensus       161 ~  161 (163)
T 3gkn_A          161 A  161 (163)
T ss_dssp             C
T ss_pred             h
Confidence            4

>3hdc_A Thioredoxin family protein; ATCC53774, DSM 7210, , structural genomics, PSI-2, protein structure initiative; 1.77A {Geobacter metallireducens gs-15}

Probab=98.38  E-value=8.5e-07  Score=58.91  Aligned_cols=46  Identities=15%  Similarity=0.250  Sum_probs=40.2

Q ss_pred             hcceeEEEeChhhHHHHhCCccCceEEEEecCCCCCeeEEEeeecCCC
Q 034345            8 FLMWLITLFQSQDVARDFGAACTPEFFLFKKDGRRPFQLVYHGQFDDS   55 (97)
Q Consensus         8 ~~~fpvL~D~~q~va~a~gA~~TPe~fvld~~g~~~~~l~Y~G~IDd~   55 (97)
                      .++||++.|..+++++.||...+|.+||||++|+  ++-+|.|..+..
T Consensus        94 ~~~~~~~~d~~~~~~~~~~v~~~P~~~lid~~G~--i~~~~~G~~~~~  139 (158)
T 3hdc_A           94 PVSFNFLSDATGQVQQRYGANRLPDTFIVDRKGI--IRQRVTGGIEWD  139 (158)
T ss_dssp             CCSCEEEECTTSHHHHHTTCCSSSEEEEECTTSB--EEEEEESCCCTT
T ss_pred             CCCceEEECchHHHHHHhCCCCcceEEEEcCCCC--EEEEEeCCCccc
Confidence            5689999999999999999999999999999996  566777876555

>3keb_A Probable thiol peroxidase; structural genomics, APC40679, PSI-2, Pro structure initiative; HET: MSE; 1.80A {Chromobacterium violaceum}

Probab=98.37  E-value=1.2e-06  Score=64.58  Aligned_cols=63  Identities=13%  Similarity=0.120  Sum_probs=48.5

Q ss_pred             hc-ceeEEEeC-hhhHHHHhCCcc---------CceEEEEecCCCCCeeEEEeeecCCCCCCCCCCCcHHHHHHHHHHHH
Q 034345            8 FL-MWLITLFQ-SQDVARDFGAAC---------TPEFFLFKKDGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECVL   76 (97)
Q Consensus         8 ~~-~fpvL~D~-~q~va~a~gA~~---------TPe~fvld~~g~~~~~l~Y~G~IDd~~~~~~~~~t~~~L~~Ai~alL   76 (97)
                      .+ +||+|.|. +++++++||+..         +|.+||||++|    +|+|++..++...    ...-..+.++|+++.
T Consensus       104 gl~~fplLsD~~~~~vak~yGv~~~~~~~~G~~~p~tfvID~dG----~I~~~~~~~~~~~----~pd~~evl~~L~~l~  175 (224)
T 3keb_A          104 GLPNIALLSTLRGRDFHKRYGVLITEYPLSGYTSPAIILADAAN----VVHYSERLANTRD----FFDFDAIEKLLQEGE  175 (224)
T ss_dssp             CCTTCEEEESTTCTTHHHHTTCBCCSTTSTTCBCCEEEEECTTC----BEEEEEECSBTTC----CCCHHHHHHHHHHHH
T ss_pred             CCCCceEEEcCCchHHHHHhCCccccccccCCccCEEEEEcCCC----EEEEEEecCCCCC----CCCHHHHHHHHHHhh
Confidence            45 69999998 699999999875         89999999999    8999998776531    112445666776665


Q ss_pred             cC
Q 034345           77 SG   78 (97)
Q Consensus        77 aG   78 (97)
                      ..
T Consensus       176 ~~  177 (224)
T 3keb_A          176 QQ  177 (224)
T ss_dssp             HH
T ss_pred             hc
Confidence            43

>1kng_A Thiol:disulfide interchange protein CYCY; thioredoxin fold, cytochrome C maturation, atomic resolution oxidoreductase; 1.14A {Bradyrhizobium japonicum} SCOP: c.47.1.10

Probab=98.35  E-value=5.6e-07  Score=58.82  Aligned_cols=56  Identities=13%  Similarity=0.190  Sum_probs=42.9

Q ss_pred             hccee-EEEeChhhHHHHhCCccCceEEEEecCCCCCeeEEEeeecCCCCCCCCCCCcHHHHHHHHHHHH
Q 034345            8 FLMWL-ITLFQSQDVARDFGAACTPEFFLFKKDGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECVL   76 (97)
Q Consensus         8 ~~~fp-vL~D~~q~va~a~gA~~TPe~fvld~~g~~~~~l~Y~G~IDd~~~~~~~~~t~~~L~~Ai~alL   76 (97)
                      .++|| ++.|+.+++++.||...+|.+||+|++|+  +.-+|.|..+.           ..+.+.|+.++
T Consensus        95 ~~~~~~~~~d~~~~~~~~~~v~~~P~~~~id~~G~--i~~~~~g~~~~-----------~~l~~~l~~~l  151 (156)
T 1kng_A           95 GNPFGRVGVDANGRASIEWGVYGVPETFVVGREGT--IVYKLVGPITP-----------DNLRSVLLPQM  151 (156)
T ss_dssp             CCCCSEEEEETTSHHHHHTTCCSSCEEEEECTTSB--EEEEEESCCCH-----------HHHHHTHHHHH
T ss_pred             CCCCceeeeCchhHHHHhcCcCccCeEEEEcCCCC--EEEEEeCCCCH-----------HHHHHHHHHHH
Confidence            46788 88999999999999999999999999994  34445665432           25666666655

>2h30_A Thioredoxin, peptide methionine sulfoxide reductase MSRA/MSRB; reduced, thiol-disulfide exchange, oxidoreductase; 1.60A {Neisseria gonorrhoeae} PDB: 2jzr_A 2jzs_A 2k9f_A 2fy6_A

Probab=98.35  E-value=4.1e-07  Score=60.09  Aligned_cols=57  Identities=16%  Similarity=0.209  Sum_probs=45.6

Q ss_pred             cc-eeEEEeChhhHHHHhCCccCceEEEEecCCCCCeeEEEeeecCCCCCCCCCCCcHHHHHHHHHHHHcC
Q 034345            9 LM-WLITLFQSQDVARDFGAACTPEFFLFKKDGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECVLSG   78 (97)
Q Consensus         9 ~~-fpvL~D~~q~va~a~gA~~TPe~fvld~~g~~~~~l~Y~G~IDd~~~~~~~~~t~~~L~~Ai~alLaG   78 (97)
                      ++ ||++.|..+++++.||...+|++||||++|+  +.-+|.|.++           ...|+..|+.+++.
T Consensus       100 ~~~~~~~~d~~~~~~~~~~v~~~P~~~lid~~G~--i~~~~~g~~~-----------~~~l~~~i~~~~~~  157 (164)
T 2h30_A          100 YPKLPVVTDNGGTIAQNLNISVYPSWALIGKDGD--VQRIVKGSIN-----------EAQALALIRNPNAD  157 (164)
T ss_dssp             CTTSCEEECTTCHHHHHTTCCSSSEEEEECTTSC--EEEEEESCCC-----------HHHHHHHHHCTTCC
T ss_pred             CCcceEEEcCchHHHHHcCCCccceEEEECCCCc--EEEEEcCCCC-----------HHHHHHHHHHHHHH
Confidence            44 8899999999999999999999999999995  3444557543           34788888887753

>3fkf_A Thiol-disulfide oxidoreductase; structural genomics, PSI-2, structure initiative, midwest center for structural genomic oxidoreductase; 2.20A {Bacteroides fragilis}

Probab=98.35  E-value=9.8e-07  Score=56.89  Aligned_cols=56  Identities=16%  Similarity=0.237  Sum_probs=46.5

Q ss_pred             hhcceeEEEeC---hhhHHHHhCCccCceEEEEecCCCCCeeEEEeeecCCCCCCCCCCCcHHHHHHHHHHHHcC
Q 034345            7 LFLMWLITLFQ---SQDVARDFGAACTPEFFLFKKDGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECVLSG   78 (97)
Q Consensus         7 ~~~~fpvL~D~---~q~va~a~gA~~TPe~fvld~~g~~~~~l~Y~G~IDd~~~~~~~~~t~~~L~~Ai~alLaG   78 (97)
                      ..++||++.|.   .+.+++.||...+|.+||+|++|    +++++..            +...|++.|+.+|+.
T Consensus        89 ~~~~~~~~~d~~~~~~~~~~~~~v~~~P~~~lid~~G----~i~~~~~------------~~~~l~~~l~~ll~~  147 (148)
T 3fkf_A           89 DTLSWDQVCDFTGLSSETAKQYAILTLPTNILLSPTG----KILARDI------------QGEALTGKLKELLKT  147 (148)
T ss_dssp             TTCCSEEECCSCGGGCHHHHHTTCCSSSEEEEECTTS----BEEEESC------------CHHHHHHHHHHHC--
T ss_pred             cCCCceEEEccCCcchHHHHhcCCCCcCEEEEECCCC----eEEEecC------------CHHHHHHHHHHHHcc
Confidence            35789999999   78999999999999999999999    6888764            245789999988764

>3fw2_A Thiol-disulfide oxidoreductase; structural genomics, APC61456.1, thiol-disulfide oxidoreduct TLPA-like family, PSI-2; 1.74A {Bacteroides thetaiotaomicron}

Probab=98.35  E-value=1.1e-06  Score=57.74  Aligned_cols=54  Identities=20%  Similarity=0.382  Sum_probs=46.2

Q ss_pred             hcceeEEEeC---hhhHHHHhCCccCceEEEEecCCCCCeeEEEeeecCCCCCCCCCCCcHHHHHHHHHHHHc
Q 034345            8 FLMWLITLFQ---SQDVARDFGAACTPEFFLFKKDGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECVLS   77 (97)
Q Consensus         8 ~~~fpvL~D~---~q~va~a~gA~~TPe~fvld~~g~~~~~l~Y~G~IDd~~~~~~~~~t~~~L~~Ai~alLa   77 (97)
                      .++||++.|.   +++++++||...+|++||||++|    +++++..            +...|++.|+.+++
T Consensus        92 ~~~~~~~~d~~~~~~~~~~~~~v~~~P~~~lid~~G----~i~~~~~------------~~~~l~~~l~~ll~  148 (150)
T 3fw2_A           92 TLDWEQVCDFGGLNSEVAKQYSIYKIPANILLSSDG----KILAKNL------------RGEELKKKIENIVE  148 (150)
T ss_dssp             TCCSEEECCSCGGGCHHHHHTTCCSSSEEEEECTTS----BEEEESC------------CHHHHHHHHHHHHH
T ss_pred             CCCceEEEcCcccchHHHHHcCCCccCeEEEECCCC----EEEEccC------------CHHHHHHHHHHHHh
Confidence            5789999999   77999999999999999999999    6888763            24478888888874

>1jfu_A Thiol:disulfide interchange protein TLPA; thioredoxin-like, double disulfide bridge, membrane protein; 1.60A {Bradyrhizobium japonicum} SCOP: c.47.1.10

Probab=98.33  E-value=8.8e-07  Score=60.16  Aligned_cols=60  Identities=17%  Similarity=0.023  Sum_probs=46.7

Q ss_pred             ceeEEEeChhhHHHHhCCc----cCceEEEEecCCCCCeeEEEeeecCCCCCCCCCCCcHHHHHHHHHHHHcCCC
Q 034345           10 MWLITLFQSQDVARDFGAA----CTPEFFLFKKDGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECVLSGQP   80 (97)
Q Consensus        10 ~fpvL~D~~q~va~a~gA~----~TPe~fvld~~g~~~~~l~Y~G~IDd~~~~~~~~~t~~~L~~Ai~alLaG~~   80 (97)
                      .||++.|+++.+++.||..    .+|++||||++|+  ++-+|.|..+..         ...+.+.|+++++++.
T Consensus       120 ~~~~~~d~~~~~~~~~~~~~~~~~~P~~~lid~~G~--i~~~~~g~~~~~---------~~~l~~~l~~ll~~~a  183 (186)
T 1jfu_A          120 RLGYFNDQKAKVFQDLKAIGRALGMPTSVLVDPQGC--EIATIAGPAEWA---------SEDALKLIRAATGKAA  183 (186)
T ss_dssp             TTCCEECTTCHHHHHHHTTTCCSSSSEEEEECTTSB--EEEEEESCCCTT---------SHHHHHHHHHHHC---
T ss_pred             CCceEECCcchHHHHhccccccCCCCEEEEECCCCC--EEEEEecCCccC---------HHHHHHHHHHHhcccc
Confidence            5899999999999999986    8999999999995  455666764322         2378999999998753

>3p7x_A Probable thiol peroxidase; thioredoxin fold, oxidoreductase; HET: PG4; 1.96A {Staphylococcus aureus} SCOP: c.47.1.0

Probab=98.32  E-value=1.3e-06  Score=58.95  Aligned_cols=43  Identities=14%  Similarity=0.270  Sum_probs=37.0

Q ss_pred             hc-ceeEEEeC-hhhHHHHhCCcc------CceEEEEecCCCCCeeEEEeeecCC
Q 034345            8 FL-MWLITLFQ-SQDVARDFGAAC------TPEFFLFKKDGRRPFQLVYHGQFDD   54 (97)
Q Consensus         8 ~~-~fpvL~D~-~q~va~a~gA~~------TPe~fvld~~g~~~~~l~Y~G~IDd   54 (97)
                      .+ +||++.|. +++++++||+..      +|+.||||++|    +++|+....+
T Consensus        99 ~~~~~~~l~D~~~~~~~~~~gv~~~~~g~~~p~~~liD~~G----~i~~~~~~~~  149 (166)
T 3p7x_A           99 GLDNVITLSDHRDLSFGENYGVVMEELRLLARAVFVLDADN----KVVYKEIVSE  149 (166)
T ss_dssp             TCSSCEEEECTTTCHHHHHHTCEETTTTEECCEEEEECTTC----BEEEEEECSB
T ss_pred             CCCceEEccCCchhHHHHHhCCccccCCceeeEEEEECCCC----eEEEEEEcCC
Confidence            46 89999999 999999999985      99999999999    6888765443

>1xvw_A Hypothetical protein RV2238C/MT2298; thioredoxin fold, oxidized cystein sulfenic acid, structural genomics, PSI; 1.90A {Mycobacterium tuberculosis} SCOP: c.47.1.10 PDB: 1xxu_A

Probab=98.32  E-value=1.4e-06  Score=57.73  Aligned_cols=60  Identities=12%  Similarity=0.075  Sum_probs=44.1

Q ss_pred             hcceeEEEeC--hhhHHHHhCCc----cCc--eEEEEecCCCCCeeEEEeeecCCCCCCCCCCCcHHHHHHHHHHHH
Q 034345            8 FLMWLITLFQ--SQDVARDFGAA----CTP--EFFLFKKDGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECVL   76 (97)
Q Consensus         8 ~~~fpvL~D~--~q~va~a~gA~----~TP--e~fvld~~g~~~~~l~Y~G~IDd~~~~~~~~~t~~~L~~Ai~alL   76 (97)
                      .++||++.|.  +++++++||..    .+|  .+||||++|+  ++-+|.|.++..       .....+.++|+++.
T Consensus        92 ~~~~~~~~d~~~~~~~~~~~~v~~~~~~~p~~~~~lid~~G~--i~~~~~g~~~~~-------~~~~~l~~~l~~l~  159 (160)
T 1xvw_A           92 GFTFPLLSDFWPHGAVSQAYGVFNEQAGIANRGTFVVDRSGI--IRFAEMKQPGEV-------RDQRLWTDALAALT  159 (160)
T ss_dssp             TCCSCEEECTTTTTHHHHHTTCEETTTTEECSEEEEECTTSB--EEEEEECCTTCC-------CCHHHHHHHHHHTC
T ss_pred             CCCceEEecCCcChHHHHHcCCccccCCCeeeeEEEECCCCe--EEEEEecCCCCC-------CCHHHHHHHHHHhc
Confidence            5689999995  89999999998    888  9999999994  444555554332       13446666776654

>3erw_A Sporulation thiol-disulfide oxidoreductase A; thioredoxin-like fold, RESA-like fold, dithiol, STOA, redox-active center; 2.50A {Bacillus subtilis} SCOP: c.47.1.0

Probab=98.31  E-value=5.9e-07  Score=57.59  Aligned_cols=43  Identities=19%  Similarity=0.357  Sum_probs=37.4

Q ss_pred             hcceeEEEeChhhHHHHhCCccCceEEEEecCCCCCeeEEEeeec
Q 034345            8 FLMWLITLFQSQDVARDFGAACTPEFFLFKKDGRRPFQLVYHGQF   52 (97)
Q Consensus         8 ~~~fpvL~D~~q~va~a~gA~~TPe~fvld~~g~~~~~l~Y~G~I   52 (97)
                      .++||++.|.++.+++.||...+|++||+|++|+  +.-+|.|..
T Consensus        93 ~~~~~~~~d~~~~~~~~~~v~~~P~~~lid~~G~--i~~~~~g~~  135 (145)
T 3erw_A           93 KLTFPIVLDSKGELMKEYHIITIPTSFLLNEKGE--IEKTKIGPM  135 (145)
T ss_dssp             TCCSCEEECSSSHHHHHTTCCEESEEEEECTTCC--EEEEEESCC
T ss_pred             CCceeEEEcCchhHHHhcCcCccCeEEEEcCCCc--EEEEEcCCc
Confidence            5789999999999999999999999999999995  445666654

>3kh7_A Thiol:disulfide interchange protein DSBE; TRX-like, thiol-disulfide exchange, cell inner membrane, CYT C-type biogenesis, disulfide bond; 1.75A {Pseudomonas aeruginosa} PDB: 3kh9_A

Probab=98.30  E-value=9.2e-07  Score=60.50  Aligned_cols=44  Identities=23%  Similarity=0.280  Sum_probs=35.8

Q ss_pred             hccee-EEEeChhhHHHHhCCccCceEEEEecCCCCCeeEEEeeecC
Q 034345            8 FLMWL-ITLFQSQDVARDFGAACTPEFFLFKKDGRRPFQLVYHGQFD   53 (97)
Q Consensus         8 ~~~fp-vL~D~~q~va~a~gA~~TPe~fvld~~g~~~~~l~Y~G~ID   53 (97)
                      .++|| ++.|.++.+++.||...+|.+||||++|+  ++-+|.|.++
T Consensus       110 ~~~~~~~~~d~~~~~~~~~~v~~~P~~~lid~~G~--i~~~~~g~~~  154 (176)
T 3kh7_A          110 HNPYLLSISDADGTLGLDLGVYGAPETYLIDKQGI--IRHKIVGVVD  154 (176)
T ss_dssp             TCCCSEEEEETTCHHHHHHTCCSSCEEEEECTTCB--EEEEEESCCC
T ss_pred             CCCCceEEECCcchHHHHcCCCCCCeEEEECCCCe--EEEEEcCCCC
Confidence            45677 68899999999999999999999999994  3445557653

>2lja_A Putative thiol-disulfide oxidoreductase; structural genomics, unknown function, thioredoxin-like; NMR {Bacteroides vulgatus}

Probab=98.29  E-value=9.9e-07  Score=57.54  Aligned_cols=58  Identities=10%  Similarity=0.160  Sum_probs=45.5

Q ss_pred             eeEEEeChhhHHHHhCCccCceEEEEecCCCCCeeEEEeeecCCCCCCCCCCCcHHHHHHHHHHHHcCCCC
Q 034345           11 WLITLFQSQDVARDFGAACTPEFFLFKKDGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECVLSGQPV   81 (97)
Q Consensus        11 fpvL~D~~q~va~a~gA~~TPe~fvld~~g~~~~~l~Y~G~IDd~~~~~~~~~t~~~L~~Ai~alLaG~~v   81 (97)
                      ++++.|..+++++.||...+|.+||+|++|    +++++..-..         +...|++.|+.++++.+=
T Consensus        90 ~~~~~d~~~~~~~~~~v~~~P~~~lid~~G----~i~~~~~g~~---------~~~~l~~~l~~~~~~~~~  147 (152)
T 2lja_A           90 IQLHMGTDRTFMDAYLINGIPRFILLDRDG----KIISANMTRP---------SDPKTAEKFNELLGLEGH  147 (152)
T ss_dssp             EEEECSSCTHHHHHTTCCSSCCEEEECTTS----CEEESSCCCT---------TCHHHHHHHHHHHTCCSS
T ss_pred             ceeecCcchhHHHHcCcCCCCEEEEECCCC----eEEEccCCCC---------CHHHHHHHHHHHhccccc
Confidence            468889999999999999999999999999    5666532111         233799999999988653

>2lrt_A Uncharacterized protein; structural genomics, thioredoxin-like, NEW YORK structural G research consortium, nysgrc, PSI-biology; NMR {Bacteroides vulgatus}

Probab=98.29  E-value=3.1e-06  Score=56.35  Aligned_cols=57  Identities=21%  Similarity=0.320  Sum_probs=45.3

Q ss_pred             hhcceeEEEeChhh---HHHHhCCccCceEEEEecCCCCCeeEEEeeecCCCCCCCCCCCcHHHHHHHHHHHHcCC
Q 034345            7 LFLMWLITLFQSQD---VARDFGAACTPEFFLFKKDGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECVLSGQ   79 (97)
Q Consensus         7 ~~~~fpvL~D~~q~---va~a~gA~~TPe~fvld~~g~~~~~l~Y~G~IDd~~~~~~~~~t~~~L~~Ai~alLaG~   79 (97)
                      ..++||++.|.++.   ++++||...+|.+||||++|    +++++..-.            ..+++.+..++.|.
T Consensus        88 ~~~~~~~~~d~~~~~~~~~~~~~v~~~P~~~lid~~G----~i~~~~~g~------------~~~e~~~~~~~~~~  147 (152)
T 2lrt_A           88 DNLPWVCVRDANGAYSSYISLYNVTNLPSVFLVNRNN----ELSARGENI------------KDLDEAIKKLLEGH  147 (152)
T ss_dssp             TTCSSEEEECSSGGGCHHHHHHTCCSCSEEEEEETTT----EEEEETTTC------------SCHHHHHHHHHGGG
T ss_pred             hCCCceEEECCCCcchHHHHHcCcccCceEEEECCCC----eEEEecCCH------------HHHHHHHHHHHhcc
Confidence            45899999999997   99999999999999999999    677654211            13677777777764

>3lwa_A Secreted thiol-disulfide isomerase; thioredoxin, PSI, MCSG, structural genomics, midwest center for structural genomics; 1.75A {Corynebacterium glutamicum}

Probab=98.28  E-value=9.2e-07  Score=60.06  Aligned_cols=59  Identities=17%  Similarity=0.116  Sum_probs=47.2

Q ss_pred             hhcceeEEEeChhhHHHHhC---CccCceEEEEecCCCCCeeEEEeeecCCCCCCCCCCCcHHHHHHHHHHHHcC
Q 034345            7 LFLMWLITLFQSQDVARDFG---AACTPEFFLFKKDGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECVLSG   78 (97)
Q Consensus         7 ~~~~fpvL~D~~q~va~a~g---A~~TPe~fvld~~g~~~~~l~Y~G~IDd~~~~~~~~~t~~~L~~Ai~alLaG   78 (97)
                      ..++||++.|.++.+++.||   ...+|++||||++|+  ++-+|.|.+           +...|.+.|+.+|+.
T Consensus       121 ~~~~~~~~~d~~~~~~~~~~~~~v~~~P~~~lid~~G~--i~~~~~g~~-----------~~~~l~~~l~~ll~~  182 (183)
T 3lwa_A          121 NGLDYPSIYDPPFMTAASLGGVPASVIPTTIVLDKQHR--PAAVFLREV-----------TSKDVLDVALPLVDE  182 (183)
T ss_dssp             TTCCSCEEECTTCGGGGGTTTCCTTCCSEEEEECTTSC--EEEEECSCC-----------CHHHHHHHHHHHHHC
T ss_pred             cCCCccEEECCcchHHHHhccCCCCCCCeEEEECCCCc--EEEEEcCCC-----------CHHHHHHHHHHHHhc
Confidence            35789999999999999996   689999999999995  344455543           245899999998863

>2jsy_A Probable thiol peroxidase; solution structure, antioxidant, oxidoreductase; NMR {Bacillus subtilis} PDB: 2jsz_A

Probab=98.27  E-value=2.6e-06  Score=57.01  Aligned_cols=60  Identities=13%  Similarity=0.177  Sum_probs=43.1

Q ss_pred             ceeEEEe-ChhhHHHHhCCcc------CceEEEEecCCCCCeeEEEeeecCCCCCCCCCCCcHHHHHHHHHHHHc
Q 034345           10 MWLITLF-QSQDVARDFGAAC------TPEFFLFKKDGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECVLS   77 (97)
Q Consensus        10 ~fpvL~D-~~q~va~a~gA~~------TPe~fvld~~g~~~~~l~Y~G~IDd~~~~~~~~~t~~~L~~Ai~alLa   77 (97)
                      +||++.| .+++++++||...      +|++||||++|    +++|+..-.+..  .  ......+.++|++|++
T Consensus       101 ~~~~~~d~~~~~~~~~~~v~~~~~g~~~p~~~lid~~G----~i~~~~~g~~~~--~--~~~~~~l~~~l~~llk  167 (167)
T 2jsy_A          101 KVETLSDHRDMSFGEAFGVYIKELRLLARSVFVLDENG----KVVYAEYVSEAT--N--HPNYEKPIEAAKALVK  167 (167)
T ss_dssp             TEEEEEGGGTCHHHHHTTCBBTTTCSBCCEEEEECTTS----CEEEEEECSBTT--S--CCCSHHHHHHHHHHHC
T ss_pred             CceEeeCCchhHHHHHhCCccccCCceeeEEEEEcCCC----cEEEEEecCCcC--C--CCCHHHHHHHHHHhhC
Confidence            8999999 8999999999887      59999999999    455554322111  0  1123467778888764

>1xzo_A BSSCO, hypothetical protein YPMQ; thioredoxin-like fold, structural genomics, montreal-kingsto bacterial structural genomics initiative, BSGI; 1.70A {Bacillus subtilis} SCOP: c.47.1.10 PDB: 1on4_A

Probab=98.21  E-value=2.5e-06  Score=56.87  Aligned_cols=60  Identities=20%  Similarity=0.228  Sum_probs=45.2

Q ss_pred             cce---eEEEeChhhHHHHhC----------------CccCceEEEEecCCCCCeeEEEeeecCCCCCCCCCCCcHHHHH
Q 034345            9 LMW---LITLFQSQDVARDFG----------------AACTPEFFLFKKDGRRPFQLVYHGQFDDSRPSNNLPVTGRDIR   69 (97)
Q Consensus         9 ~~f---pvL~D~~q~va~a~g----------------A~~TPe~fvld~~g~~~~~l~Y~G~IDd~~~~~~~~~t~~~L~   69 (97)
                      ++|   |++.|.+++++++|+                ...+|++||||++|+  ++-+|.|..+.         ....|.
T Consensus        96 ~~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~lid~~G~--i~~~~~g~~~~---------~~~~l~  164 (174)
T 1xzo_A           96 LSFDNWDFLTGYSQSEIEEFALKSFKAIVKKPEGEDQVIHQSSFYLVGPDGK--VLKDYNGVENT---------PYDDII  164 (174)
T ss_dssp             CCGGGEEEEBCSCHHHHHHHHHHHHCCCCCCCSSCCSCCSCCEEEEECTTSE--EEEEEESSSSC---------CHHHHH
T ss_pred             CCCcceEEEeCCCHHHHHHHHHhhcCeeEeecCCCCeeeeeeEEEEECCCCe--EEEEEcCCCCC---------CHHHHH
Confidence            456   999998889888875                467999999999994  44445676531         245799


Q ss_pred             HHHHHHHcCC
Q 034345           70 LAIECVLSGQ   79 (97)
Q Consensus        70 ~Ai~alLaG~   79 (97)
                      ++|+++|+.+
T Consensus       165 ~~l~~ll~~k  174 (174)
T 1xzo_A          165 SDVKSASTLK  174 (174)
T ss_dssp             HHHHHHTCCC
T ss_pred             HHHHHHHhcC
Confidence            9999998753

>3zrd_A Thiol peroxidase; oxidoreductase, 2Cys peroxiredoxin, thioredoxin-fold, ROS PR; 1.74A {Yersinia pseudotuberculosis} PDB: 2xpe_A 2xpd_A 3zre_A 2yjh_A 4af2_A 3hvs_A* 1qxh_A* 3i43_A* 3hvv_A 3hvx_A

Probab=98.19  E-value=3.2e-06  Score=59.66  Aligned_cols=57  Identities=11%  Similarity=0.191  Sum_probs=43.1

Q ss_pred             hc-ceeEEEeC-hhhHHHHhCCc---------cCceEEEEecCCCCCeeEEEeeecCCCCCCCCCCCcHHHHHHHHHHH
Q 034345            8 FL-MWLITLFQ-SQDVARDFGAA---------CTPEFFLFKKDGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECV   75 (97)
Q Consensus         8 ~~-~fpvL~D~-~q~va~a~gA~---------~TPe~fvld~~g~~~~~l~Y~G~IDd~~~~~~~~~t~~~L~~Ai~al   75 (97)
                      .+ +||++.|. +++++++||+.         .+|.+||||++|    +++|+....+...       ...++++|++|
T Consensus       132 ~~~~f~~l~D~~~~~~~~~ygv~~~~~~~~g~~~p~~~lID~~G----~I~~~~~~~~~~~-------~~~~~~~l~~L  199 (200)
T 3zrd_A          132 GLSNVITLSTLRGADFKQAYGVAITEGPLAGLTARAVVVLDGQD----NVIYSELVNEITT-------EPNYDAALAAL  199 (200)
T ss_dssp             TCTTEEEEETTSCTHHHHHTTCEECSSTTTTSBCCEEEEECTTS----BEEEEEECSBTTS-------CCCHHHHHHHH
T ss_pred             CCCCceEEecCchHHHHHHhCceeecccCCCccccEEEEECCCC----eEEEEEecCCccc-------CCCHHHHHHhh
Confidence            56 99999999 99999999987         479999999999    6888765443311       11366666654

>3ewl_A Uncharacterized conserved protein BF1870; alpha-beta fold, structural genomics, PSI-2, protein structu initiative; 2.00A {Bacteroides fragilis}

Probab=98.19  E-value=2.1e-06  Score=55.49  Aligned_cols=53  Identities=9%  Similarity=0.225  Sum_probs=42.3

Q ss_pred             hcceeEEEeChhhHHH--HhCCccCceEEEEecCCCCCeeEEEeeecCCCCCCCCCCCcHHHHHHHHHHHH
Q 034345            8 FLMWLITLFQSQDVAR--DFGAACTPEFFLFKKDGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECVL   76 (97)
Q Consensus         8 ~~~fpvL~D~~q~va~--a~gA~~TPe~fvld~~g~~~~~l~Y~G~IDd~~~~~~~~~t~~~L~~Ai~alL   76 (97)
                      .++||++.|.++.++.  .||...+|++||||++|    +++|++            .+...|++.|+.+.
T Consensus        86 ~~~~~~~~d~~~~~~~~~~~~v~~~P~~~lid~~G----~i~~~~------------~~~~~l~~~l~~~~  140 (142)
T 3ewl_A           86 PQGWIVGWNKAGDIRTRQLYDIRATPTIYLLDGRK----RVILKD------------TSMEQLIDYLATQA  140 (142)
T ss_dssp             CTTCEEEECTTCHHHHTTCSCCCSSSEEEEECTTC----BEEECS------------CCHHHHHHHHHC--
T ss_pred             CCCcceeeCCccchhhHHHcCCCCCCeEEEECCCC----CEEecC------------CCHHHHHHHHHHHc
Confidence            4689999999999987  99999999999999999    688843            13446777776553

>3ixr_A Bacterioferritin comigratory protein; alpha beta protein, oxidoreductase; 1.60A {Xylella fastidiosa}

Probab=98.19  E-value=4.4e-06  Score=57.41  Aligned_cols=59  Identities=8%  Similarity=0.089  Sum_probs=42.3

Q ss_pred             hcceeEEEeChhhHHHHhCCcc------------CceEEEEecCCCCCeeEEEeeecCCCCCCCCCCCcHHHHHHHHHHH
Q 034345            8 FLMWLITLFQSQDVARDFGAAC------------TPEFFLFKKDGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECV   75 (97)
Q Consensus         8 ~~~fpvL~D~~q~va~a~gA~~------------TPe~fvld~~g~~~~~l~Y~G~IDd~~~~~~~~~t~~~L~~Ai~al   75 (97)
                      .++||++.|.+++++++||+..            +|..||||++|    +++|+=  .+..    .......+.++|+++
T Consensus       107 ~~~f~~l~D~~~~~~~~~gv~~~~~~~g~~~~~~~p~~~lID~~G----~I~~~~--~~~~----~~~~~~~il~~l~~l  176 (179)
T 3ixr_A          107 GFTFPLVSDSDAILCKAFDVIKEKTMYGRQVIGIERSTFLIGPTH----RIVEAW--RQVK----VPGHAEEVLNKLKAH  176 (179)
T ss_dssp             TCCSCEEECTTCHHHHHTTCEEEECCC--CEEEECCEEEEECTTS----BEEEEE--CSCC----STTHHHHHHHHHHHH
T ss_pred             CCceEEEECCchHHHHHcCCcccccccCcccCCcceEEEEECCCC----EEEEEE--cCCC----CCCCHHHHHHHHHHH
Confidence            6789999999999999999864            68899999999    566553  1111    112344666667665


Q ss_pred             H
Q 034345           76 L   76 (97)
Q Consensus        76 L   76 (97)
                      .
T Consensus       177 ~  177 (179)
T 3ixr_A          177 A  177 (179)
T ss_dssp             H
T ss_pred             h
Confidence            4

>3or5_A Thiol:disulfide interchange protein, thioredoxin protein; PSI-II, structural genomics, protein structure initiative; 1.66A {Chlorobaculum tepidum} SCOP: c.47.1.0

Probab=98.15  E-value=3.6e-06  Score=55.40  Aligned_cols=58  Identities=17%  Similarity=0.335  Sum_probs=44.8

Q ss_pred             hcceeEEEeChhhHHHHh------CCccCceEEEEecCCCCCeeEEEeeecCCCCCCCCCCCcHHHHHHHHHHHHcCC
Q 034345            8 FLMWLITLFQSQDVARDF------GAACTPEFFLFKKDGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECVLSGQ   79 (97)
Q Consensus         8 ~~~fpvL~D~~q~va~a~------gA~~TPe~fvld~~g~~~~~l~Y~G~IDd~~~~~~~~~t~~~L~~Ai~alLaG~   79 (97)
                      .++||++.|.. ++++.|      |...+|.+||||++|+  +.-+|.|..           +...+++.|+.+|+..
T Consensus        90 ~~~~~~~~~~~-~~~~~~~~~~~~~i~~~P~~~lid~~G~--i~~~~~g~~-----------~~~~l~~~l~~~l~~~  153 (165)
T 3or5_A           90 GIIYPVMMATP-ELIRAFNGYIDGGITGIPTSFVIDASGN--VSGVIVGPR-----------SKADFDRIVKMALGAK  153 (165)
T ss_dssp             TCCSCEEECCH-HHHHHHHTTSTTCSCSSSEEEEECTTSB--EEEEECSCC-----------CHHHHHHHHHHHHC--
T ss_pred             CCCCceEecCH-HHHHHHhhhhccCCCCCCeEEEECCCCc--EEEEEcCCC-----------CHHHHHHHHHHHHhhh
Confidence            57899999987 899999      7899999999999994  334455643           2447889999998754

>2hyx_A Protein DIPZ; thioredoxin fold, jelly-roll, structural genomics, TB struct genomics consortium, TBSGC, unknown function; 1.90A {Mycobacterium tuberculosis}

Probab=98.15  E-value=2.3e-06  Score=66.29  Aligned_cols=59  Identities=14%  Similarity=0.151  Sum_probs=47.2

Q ss_pred             hcceeEEEeChhhHHHHhCCccCceEEEEecCCCCCeeEEEeeecCCCCCCCCCCCcHHHHHHHHHHHHcCC
Q 034345            8 FLMWLITLFQSQDVARDFGAACTPEFFLFKKDGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECVLSGQ   79 (97)
Q Consensus         8 ~~~fpvL~D~~q~va~a~gA~~TPe~fvld~~g~~~~~l~Y~G~IDd~~~~~~~~~t~~~L~~Ai~alLaG~   79 (97)
                      .++||++.|.+++++++|+...+|.+||||++|+  ++-+|.|..+           ...|++.|+++|+..
T Consensus       143 ~l~fpv~~D~~~~l~~~ygV~~~Pt~~lID~~G~--Iv~~~~G~~~-----------~~~l~~~I~~lL~e~  201 (352)
T 2hyx_A          143 GISYPIALDNNYATWTNYRNRYWPAEYLIDATGT--VRHIKFGEGD-----------YNVTETLVRQLLNDA  201 (352)
T ss_dssp             TCCSCEEECTTSHHHHHTTCCEESEEEEECTTSB--EEEEEESBCC-----------HHHHHHHHHHHHHHH
T ss_pred             CCCccEEeCCcHHHHHHcCCCccCEEEEEeCCCe--EEEEEcCCCC-----------HHHHHHHHHHHHhhc
Confidence            5789999999999999999999999999999995  4445556532           336888888887643

>2b1k_A Thiol:disulfide interchange protein DSBE; C-terminal thioredoxin-like domain, N-terminal beta-sheet, fingerprint rigion, oxidoreductase; 1.90A {Escherichia coli} PDB: 3k8n_A 2g0f_A 1z5y_E 2b1l_A

Probab=98.15  E-value=2.3e-06  Score=57.05  Aligned_cols=43  Identities=19%  Similarity=0.203  Sum_probs=34.9

Q ss_pred             hccee-EEEeChhhHHHHhCCccCceEEEEecCCCCCeeEEEeeec
Q 034345            8 FLMWL-ITLFQSQDVARDFGAACTPEFFLFKKDGRRPFQLVYHGQF   52 (97)
Q Consensus         8 ~~~fp-vL~D~~q~va~a~gA~~TPe~fvld~~g~~~~~l~Y~G~I   52 (97)
                      .++|| ++.|+.+++++.||...+|++||||++|+  +.-+|.|..
T Consensus       103 ~~~~~~~~~d~~~~~~~~~~v~~~P~~~lid~~G~--i~~~~~g~~  146 (168)
T 2b1k_A          103 GNPYALSLFDGDGMLGLDLGVYGAPETFLIDGNGI--IRYRHAGDL  146 (168)
T ss_dssp             CCCCSEEEEETTCHHHHHHTCCSSSEEEEECTTSB--EEEEEESCC
T ss_pred             CCCCceeeECcchHHHHHcCccccCEEEEECCCCe--EEEEEeCCC
Confidence            46777 67899999999999999999999999994  333455643

>1xvq_A Thiol peroxidase; thioredoxin fold, structural genomics, PSI, protein structur initiative, TB structural genomics consortium, TBSGC; 1.75A {Mycobacterium tuberculosis} SCOP: c.47.1.10 PDB: 1y25_A

Probab=98.14  E-value=5.2e-06  Score=56.65  Aligned_cols=54  Identities=11%  Similarity=0.212  Sum_probs=42.0

Q ss_pred             ceeEEEeChhhHHHHhCCccC---------ceEEEEecCCCCCeeEEEeee---cCCCCCCCCCCCcHHHHHHHHHHHHc
Q 034345           10 MWLITLFQSQDVARDFGAACT---------PEFFLFKKDGRRPFQLVYHGQ---FDDSRPSNNLPVTGRDIRLAIECVLS   77 (97)
Q Consensus        10 ~fpvL~D~~q~va~a~gA~~T---------Pe~fvld~~g~~~~~l~Y~G~---IDd~~~~~~~~~t~~~L~~Ai~alLa   77 (97)
                      +||++.|.+++++++||...+         |..||||++|    +++|+..   +.+.          ..++++|+++.+
T Consensus       100 ~~~~l~D~~~~~~~~~gv~~~~~~~~g~~~p~~~lid~~G----~I~~~~~g~~~~~~----------~~~~~~l~~l~~  165 (175)
T 1xvq_A          100 NVMPASAFRDSFGEDYGVTIADGPMAGLLARAIVVIGADG----NVAYTELVPEIAQE----------PNYEAALAALGA  165 (175)
T ss_dssp             CEEEEECTTSSHHHHTTCBBCSSTTTTSBCSEEEEECTTS----BEEEEEECSBTTCC----------CCHHHHHHHHHH
T ss_pred             CceEeeCCHHHHHHHhCCcccccccCCcccceEEEECCCC----eEEEEEECCCcCCC----------CCHHHHHHHHHh
Confidence            899999999999999999877         9999999999    5666543   2222          147777777764

>1psq_A Probable thiol peroxidase; structural genomics, NYSGXRC, PSI, structure initiative, NEW YORK SGX research center for STRU genomics; 2.30A {Streptococcus pneumoniae} SCOP: c.47.1.10

Probab=98.13  E-value=9.1e-06  Score=54.59  Aligned_cols=40  Identities=15%  Similarity=0.189  Sum_probs=33.7

Q ss_pred             hc-ceeEEEe-ChhhHHHHhCCcc------CceEEEEecCCCCCeeEEEeee
Q 034345            8 FL-MWLITLF-QSQDVARDFGAAC------TPEFFLFKKDGRRPFQLVYHGQ   51 (97)
Q Consensus         8 ~~-~fpvL~D-~~q~va~a~gA~~------TPe~fvld~~g~~~~~l~Y~G~   51 (97)
                      .+ +||++.| .+++++++||+..      +|..||||++|    +++|+..
T Consensus        96 ~~~~~~~l~D~~~~~~~~~~gv~~~~~g~~~p~~~liD~~G----~i~~~~~  143 (163)
T 1psq_A           96 GLDNAIMLSDYFDHSFGRDYALLINEWHLLARAVFVLDTDN----TIRYVEY  143 (163)
T ss_dssp             TCTTSEEEECTTTCHHHHHHTCBCTTTCSBCCEEEEECTTC----BEEEEEE
T ss_pred             CCCCcEEecCCchhHHHHHhCCccccCCceEEEEEEEcCCC----eEEEEEe
Confidence            46 8999999 8999999999874      59999999999    5666543

>2yzh_A Probable thiol peroxidase; redox protein, antioxidant, oxidoreductase, STRU genomics, NPPSFA; 1.85A {Aquifex aeolicus}

Probab=98.11  E-value=6.4e-06  Score=55.62  Aligned_cols=60  Identities=10%  Similarity=0.223  Sum_probs=40.4

Q ss_pred             hc-ceeEEEe-ChhhHHHHhCCcc---------CceEEEEecCCCCCeeEEEeeecCCCCCCCCCCCcHHHHHHHHHHHH
Q 034345            8 FL-MWLITLF-QSQDVARDFGAAC---------TPEFFLFKKDGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECVL   76 (97)
Q Consensus         8 ~~-~fpvL~D-~~q~va~a~gA~~---------TPe~fvld~~g~~~~~l~Y~G~IDd~~~~~~~~~t~~~L~~Ai~alL   76 (97)
                      .+ +||++.| +++++ ++||+..         +|++||||++|    +++|+..-.+..  .  ......+.++|++||
T Consensus       101 ~~~~~~~l~D~~~~~~-~~~gv~~~~~~~~g~~~p~~~liD~~G----~i~~~~~~~~~~--~--~~~~~~ll~~l~~ll  171 (171)
T 2yzh_A          101 NIQNVTVASDFRYRDM-EKYGVLIGEGALKGILARAVFIIDKEG----KVAYVQLVPEIT--E--EPNYDEVVNKVKELI  171 (171)
T ss_dssp             TCCSSEEEECTTTCGG-GGGTCBBCSSTTTTSBCCEEEEECTTS----BEEEEEECSBTT--S--CCCCHHHHHHHHHC-
T ss_pred             CCCCeEEeecCccCcH-HHhCCEecccccCCceeeEEEEEcCCC----eEEEEEeCCCcC--C--CCCHHHHHHHHHhhC
Confidence            46 8999999 88999 9999863         79999999999    465554321110  0  011235777777654

>2a4v_A Peroxiredoxin DOT5; yeast nuclear thiol peroxidase, atypical 2-Cys peroxiredoxin, oxidoreductase; 1.80A {Saccharomyces cerevisiae} SCOP: c.47.1.10

Probab=98.08  E-value=1.7e-06  Score=57.75  Aligned_cols=38  Identities=26%  Similarity=0.412  Sum_probs=33.3

Q ss_pred             hcceeEEEeChhhHHHHhCCccCc------eEEEEecCCCCCeeEEEee
Q 034345            8 FLMWLITLFQSQDVARDFGAACTP------EFFLFKKDGRRPFQLVYHG   50 (97)
Q Consensus         8 ~~~fpvL~D~~q~va~a~gA~~TP------e~fvld~~g~~~~~l~Y~G   50 (97)
                      .++||++.|.+++++++||+..+|      +.||| ++|    +++|+-
T Consensus        90 ~~~~~~l~D~~~~~~~~~gv~~~p~~g~~~~~~li-~~G----~i~~~~  133 (159)
T 2a4v_A           90 NLPYHLLSDPKREFIGLLGAKKTPLSGSIRSHFIF-VDG----KLKFKR  133 (159)
T ss_dssp             TCSSEEEECTTCHHHHHHTCBSSSSSCBCCEEEEE-ETT----EEEEEE
T ss_pred             CCCceEEECCccHHHHHhCCcccccCCccceEEEE-cCC----EEEEEE
Confidence            578999999999999999999998      89999 999    566553

>1q98_A Thiol peroxidase, TPX; structural genomics, NYSGXRC, PSI, protein structure initiative; 1.90A {Haemophilus influenzae} SCOP: c.47.1.10

Probab=98.06  E-value=6.6e-06  Score=55.49  Aligned_cols=40  Identities=3%  Similarity=0.009  Sum_probs=33.8

Q ss_pred             hc-ceeEEEeC-hhhHHHHhCCcc---------CceEEEEecCCCCCeeEEEeee
Q 034345            8 FL-MWLITLFQ-SQDVARDFGAAC---------TPEFFLFKKDGRRPFQLVYHGQ   51 (97)
Q Consensus         8 ~~-~fpvL~D~-~q~va~a~gA~~---------TPe~fvld~~g~~~~~l~Y~G~   51 (97)
                      .+ +||++.|. +++++++||+..         +|..||||++|    +++|+..
T Consensus        97 ~~~~~~~l~D~~~~~~~~~~gv~~~~~~~~g~~~p~~~liD~~G----~i~~~~~  147 (165)
T 1q98_A           97 GIENAKTVSTFRNHALHSQLGVDIQTGPLAGLTSRAVIVLDEQN----NVLHSQL  147 (165)
T ss_dssp             TCTTEEEEECTTCTHHHHHTTCEECSSTTTTSBCCEEEEECTTS----BEEEEEE
T ss_pred             CCCceEEeeccccchHHHHhCceecccccCCccceeEEEEcCCC----EEEEEEe
Confidence            46 79999998 899999999864         69999999999    5666654

>3mng_A Peroxiredoxin-5, mitochondrial; peroxidase, PRXV, substrate analog, DTT, oxidoreductase; 1.45A {Homo sapiens} SCOP: c.47.1.10 PDB: 2vl3_A 1oc3_A 2vl2_A 2vl9_A 1urm_A 1hd2_A 1h4o_A

Probab=98.05  E-value=1.6e-05  Score=55.39  Aligned_cols=39  Identities=8%  Similarity=-0.058  Sum_probs=33.1

Q ss_pred             eeEEEeChhhHHHHhCCc-------------cCceEEEEecCCCCCeeEEEeeecCC
Q 034345           11 WLITLFQSQDVARDFGAA-------------CTPEFFLFKKDGRRPFQLVYHGQFDD   54 (97)
Q Consensus        11 fpvL~D~~q~va~a~gA~-------------~TPe~fvld~~g~~~~~l~Y~G~IDd   54 (97)
                      ||+|.|++++++++||+.             ..|.+|||| +|    +++|.-.-++
T Consensus       106 fp~l~D~~~~va~~yGv~~~~~~~~~~g~~~~~r~tfvID-dG----~I~~~~v~~~  157 (173)
T 3mng_A          106 VRLLADPTGAFGKETDLLLDDSLVSIFGNRRLKRFSMVVQ-DG----IVKALNVEPD  157 (173)
T ss_dssp             CEEEECTTCHHHHHHTCBCCSTTHHHHSSCCBCCEEEEEE-TT----EEEEEEECTT
T ss_pred             eEEEECCChHHHHHhCCCcccccccccCCcceEEEEEEEE-CC----EEEEEEEeCC
Confidence            999999999999999986             349999999 99    7888754333

>4eo3_A Bacterioferritin comigratory protein/NADH dehydro; thioredoxin-fold, alpha-beta-aplha sandwich fold, antioxidan oxidoreductase, FMN binding; HET: FMN; 1.65A {Thermotoga maritima}

Probab=98.03  E-value=4.1e-06  Score=63.82  Aligned_cols=61  Identities=10%  Similarity=0.022  Sum_probs=43.4

Q ss_pred             hhcceeEEEeChhhHHHHhCC----ccCceEEEEecCCCCCeeEEEeeecCCCCCCCCCCCcHHHHHHHHHHHHc
Q 034345            7 LFLMWLITLFQSQDVARDFGA----ACTPEFFLFKKDGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECVLS   77 (97)
Q Consensus         7 ~~~~fpvL~D~~q~va~a~gA----~~TPe~fvld~~g~~~~~l~Y~G~IDd~~~~~~~~~t~~~L~~Ai~alLa   77 (97)
                      ..++||+|.|++++++++||+    ...|.+||||++|.  ++-.|++-   ..     .-....+-++|+++..
T Consensus        75 ~~l~fp~l~D~~~~v~~~ygv~~~~~~~r~tfiId~~G~--i~~~~~~v---~~-----~~h~~~~l~~~~~~~~  139 (322)
T 4eo3_A           75 NDLKVTLLSDPEGILHEFFNVLENGKTVRSTFLIDRWGF--VRKEWRRV---KV-----EGHVQEVKEALDRLIE  139 (322)
T ss_dssp             HTCCSEEEECTTCHHHHHTTCEETTEECCEEEEECTTSB--EEEEEESC---CS-----TTHHHHHHHHHHHHHH
T ss_pred             hCCceEEEEcCchHHHHhcCCCCCCcCccEEEEECCCCE--EEEEEeCC---Cc-----cccHHHHHHHHhhhch
Confidence            358999999999999999998    46789999999994  33345431   11     1123456667777764

>1tp9_A Peroxiredoxin, PRX D (type II); oligomer, thioredoxin fold, oxidoreductase; 1.62A {Populus trichocarpa} SCOP: c.47.1.10

Probab=98.00  E-value=7.5e-06  Score=55.32  Aligned_cols=36  Identities=11%  Similarity=-0.045  Sum_probs=32.8

Q ss_pred             ceeEEEeChhhHHHHhCCc-----------cCceEEEEecCCCCCeeEEEee
Q 034345           10 MWLITLFQSQDVARDFGAA-----------CTPEFFLFKKDGRRPFQLVYHG   50 (97)
Q Consensus        10 ~fpvL~D~~q~va~a~gA~-----------~TPe~fvld~~g~~~~~l~Y~G   50 (97)
                      +||+|.|++++++++||+.           .+|++|||| +|    +++|+.
T Consensus        97 ~~~~l~D~~~~~~~~~gv~~~~~~~g~~~~~~p~~~vid-~G----~i~~~~  143 (162)
T 1tp9_A           97 HVKFLADGSATYTHALGLELDLQEKGLGTRSRRFALLVD-DL----KVKAAN  143 (162)
T ss_dssp             SEEEEECTTSHHHHHTTCEEEETTTTSEEEECCEEEEEE-TT----EEEEEE
T ss_pred             CeEEEECCCchHHHHcCcccccccCCCCccceeEEEEEE-CC----EEEEEE
Confidence            7999999999999999987           389999999 99    788876

>2ggt_A SCO1 protein homolog, mitochondrial; copper chaperone, Cu-binding protein, mitochondrial assembly factor, redox, nickel, disuplhide, mitochondrion; 2.40A {Homo sapiens} SCOP: c.47.1.10 PDB: 2gqk_A 2gql_A 2gqm_A 2gt5_A 2gt6_A 2gvp_A 2hrf_A 2hrn_A 1wp0_A

Probab=97.99  E-value=3.8e-06  Score=55.36  Aligned_cols=57  Identities=18%  Similarity=0.196  Sum_probs=43.1

Q ss_pred             hcceeEE---EeChhhHHHHhCCccCc---------------eEEEEecCCCCCeeEEEeeecCCCCCCCCCCCcHHHHH
Q 034345            8 FLMWLIT---LFQSQDVARDFGAACTP---------------EFFLFKKDGRRPFQLVYHGQFDDSRPSNNLPVTGRDIR   69 (97)
Q Consensus         8 ~~~fpvL---~D~~q~va~a~gA~~TP---------------e~fvld~~g~~~~~l~Y~G~IDd~~~~~~~~~t~~~L~   69 (97)
                      .++||+|   .|..++++++||...+|               .+||||++|+  ++-+|.|..           +...|.
T Consensus        87 ~~~~~~l~~~~d~~~~~~~~~~v~~~p~~~~~~~~~~~~~~~~~~lid~~G~--i~~~~~g~~-----------~~~~l~  153 (164)
T 2ggt_A           87 SPKLVGLTGTREEVDQVARAYRVYYSPGPKDEDEDYIVDHTIIMYLIGPDGE--FLDYFGQNK-----------RKGEIA  153 (164)
T ss_dssp             CSSCEEEECCHHHHHHHHHTTTCCEEEEEECTTSCEEEEECCEEEEECTTSC--EEEEEETTC-----------CHHHHH
T ss_pred             CCCeEEEeCCHHHHHHHHHhcCeEEEecCCCCCCCeeEeccceEEEECCCCe--EEEEeCCCC-----------CHHHHH
Confidence            4678888   46777899999999999               8999999995  344444432           234788


Q ss_pred             HHHHHHHc
Q 034345           70 LAIECVLS   77 (97)
Q Consensus        70 ~Ai~alLa   77 (97)
                      ++|+++|+
T Consensus       154 ~~l~~ll~  161 (164)
T 2ggt_A          154 ASIATHMR  161 (164)
T ss_dssp             HHHHHHHG
T ss_pred             HHHHHHHH
Confidence            89998875

>3hcz_A Possible thiol-disulfide isomerase; APC61559.2, cytophaga hutchinsoni structural genomics, PSI-2, protein structure initiative; 1.88A {Cytophaga hutchinsonii}

Probab=97.98  E-value=6.6e-06  Score=52.89  Aligned_cols=35  Identities=14%  Similarity=0.352  Sum_probs=32.1

Q ss_pred             eeEEEeChhh--HHHHhCCccCceEEEEecCCCCCeeEEEe
Q 034345           11 WLITLFQSQD--VARDFGAACTPEFFLFKKDGRRPFQLVYH   49 (97)
Q Consensus        11 fpvL~D~~q~--va~a~gA~~TPe~fvld~~g~~~~~l~Y~   49 (97)
                      ||++.|.++.  +++.||...+|++||+|++|    +++++
T Consensus        91 ~~~~~d~~~~~~~~~~~~i~~~P~~~lid~~G----~i~~~  127 (148)
T 3hcz_A           91 WLNVRDSKNHTDFKITYDIYATPVLYVLDKNK----VIIAK  127 (148)
T ss_dssp             SEEEECTTCCCCHHHHHCCCSSCEEEEECTTC----BEEEE
T ss_pred             ceEEeccccchhHHHhcCcCCCCEEEEECCCC----cEEEe
Confidence            9999999998  99999999999999999999    56655

>2wfc_A Peroxiredoxin 5, PRDX5; oxidoreductase, antioxidant enzymes; 1.75A {Arenicola marina}

Probab=97.97  E-value=2e-05  Score=54.12  Aligned_cols=38  Identities=5%  Similarity=-0.090  Sum_probs=33.9

Q ss_pred             hcc--eeEEEeChhhHHHHhCCccC-----------ceEEEEecCCCCCeeEEEee
Q 034345            8 FLM--WLITLFQSQDVARDFGAACT-----------PEFFLFKKDGRRPFQLVYHG   50 (97)
Q Consensus         8 ~~~--fpvL~D~~q~va~a~gA~~T-----------Pe~fvld~~g~~~~~l~Y~G   50 (97)
                      .++  ||+|.|++++++++||+..+           |.+||| ++|    +++|+.
T Consensus        89 ~~~~~fp~l~D~~~~~~~~~gv~~~~~~~~g~~~~~p~t~lI-~~G----~I~~~~  139 (167)
T 2wfc_A           89 GADDKVQMLADPGGAFTKAVDMELDLSAVLGNVRSKRYSLVI-EDG----VVTKVN  139 (167)
T ss_dssp             TCTTTSEEEECTTSHHHHHTTCEECCHHHHSSCEECCEEEEE-ETT----EEEEEE
T ss_pred             CCCcceEEEECCCCcHHHHcCCccccccccCcccceEEEEEE-eCC----EEEEEE
Confidence            456  99999999999999998876           999999 999    788884

>2v1m_A Glutathione peroxidase; selenium, selenocysteine, oxidoreductase, lipid peroxidase, schistosoma detoxification pathway; 1.00A {Schistosoma mansoni} PDB: 2wgr_A

Probab=97.88  E-value=7.1e-06  Score=54.26  Aligned_cols=59  Identities=17%  Similarity=0.070  Sum_probs=41.3

Q ss_pred             hcceeEEE--eChhhHHH-Hh--------C-----CccCceEEEEecCCCCCeeEEEeeecCCCCCCCCCCCcHHHHHHH
Q 034345            8 FLMWLITL--FQSQDVAR-DF--------G-----AACTPEFFLFKKDGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLA   71 (97)
Q Consensus         8 ~~~fpvL~--D~~q~va~-a~--------g-----A~~TPe~fvld~~g~~~~~l~Y~G~IDd~~~~~~~~~t~~~L~~A   71 (97)
                      .++||++.  |.++.++. .|        |     ...+|+.||||++|+  ++-+|.|..+.           ..|+++
T Consensus        95 ~~~~~~~~~~d~~~~~~~~~~~~l~~~~~~~~~~~i~~~P~~~lid~~G~--i~~~~~g~~~~-----------~~l~~~  161 (169)
T 2v1m_A           95 GVQFDMFSKIKVNGSDADDLYKFLKSRQHGTLTNNIKWNFSKFLVDRQGQ--PVKRYSPTTAP-----------YDIEGD  161 (169)
T ss_dssp             CCCSEEBCCCCCSSTTSCHHHHHHHHHSCCSSSCSCCSTTCEEEECTTSC--EEEEECTTSCG-----------GGGHHH
T ss_pred             CCCCceEEEEeecCccccHHHHHHHhhcCCccCCcccccceEEEECCCCC--EEEEcCCCCCH-----------HHHHHH
Confidence            57899995  88877653 34        5     334689999999995  44445564332           268889


Q ss_pred             HHHHHcCC
Q 034345           72 IECVLSGQ   79 (97)
Q Consensus        72 i~alLaG~   79 (97)
                      |+++|+.+
T Consensus       162 i~~ll~~k  169 (169)
T 2v1m_A          162 IMELLEKK  169 (169)
T ss_dssp             HHHHHHCC
T ss_pred             HHHHhccC
Confidence            99998754

>2rli_A SCO2 protein homolog, mitochondrial; copper protein, thioredoxin fold, metal transport, structural genomics, spine2-complexes; NMR {Homo sapiens}

Probab=97.88  E-value=1.7e-05  Score=52.57  Aligned_cols=58  Identities=12%  Similarity=0.154  Sum_probs=43.2

Q ss_pred             hcceeEEEeCh---hhHHHHhCCccCc---------------eEEEEecCCCCCeeEEEeeecCCCCCCCCCCCcHHHHH
Q 034345            8 FLMWLITLFQS---QDVARDFGAACTP---------------EFFLFKKDGRRPFQLVYHGQFDDSRPSNNLPVTGRDIR   69 (97)
Q Consensus         8 ~~~fpvL~D~~---q~va~a~gA~~TP---------------e~fvld~~g~~~~~l~Y~G~IDd~~~~~~~~~t~~~L~   69 (97)
                      .++||+|.|..   +.++++||...+|               .+||||++|+  ++-+|.|..+           ...|.
T Consensus        90 ~~~~~~l~~~~~~~~~~~~~~~v~~~p~~~~~~~~~~~~~~~~~~lid~~G~--i~~~~~g~~~-----------~~~l~  156 (171)
T 2rli_A           90 HPRLLGLTGSTKQVAQASHSYRVYYNAGPKDEDQDYIVDHSIAIYLLNPDGL--FTDYYGRSRS-----------AEQIS  156 (171)
T ss_dssp             CTTCCEEECCHHHHHHHHHHSCCCCEECCCCSSCCCCEECCCEEEEECTTSC--EEEEEESSCC-----------HHHHH
T ss_pred             CCCeEEEeCCHHHHHHHHHHhCeEEEecCCCCCCCeEEeccceEEEECCCCe--EEEEECCCCC-----------HHHHH
Confidence            35788888643   5799999998887               8999999995  4445555432           34788


Q ss_pred             HHHHHHHcC
Q 034345           70 LAIECVLSG   78 (97)
Q Consensus        70 ~Ai~alLaG   78 (97)
                      +.|+++++.
T Consensus       157 ~~l~~ll~~  165 (171)
T 2rli_A          157 DSVRRHMAA  165 (171)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            888888864

>2ls5_A Uncharacterized protein; structural genomics, unknown function, thioredoxin-like, NEW structural genomics research consortium; NMR {Bacteroides thetaiotaomicron}

Probab=97.10  E-value=1.8e-06  Score=57.07  Aligned_cols=58  Identities=10%  Similarity=0.145  Sum_probs=42.0

Q ss_pred             hcceeEEEeChhhHHHHhCC--ccCceEEEEecCCCCCeeEEEeeecCCCCCCCCCCCcHHHHHHHHHHHHcCC
Q 034345            8 FLMWLITLFQSQDVARDFGA--ACTPEFFLFKKDGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECVLSGQ   79 (97)
Q Consensus         8 ~~~fpvL~D~~q~va~a~gA--~~TPe~fvld~~g~~~~~l~Y~G~IDd~~~~~~~~~t~~~L~~Ai~alLaG~   79 (97)
                      .++||++.|++++++++||.  ..+|++||||++|    +++++..-- +         ...+++.|+++..+.
T Consensus        91 ~~~~~~~~d~~~~~~~~~~~~~~~~P~~~lid~~G----~i~~~~~g~-~---------~~~l~~~l~~l~~~~  150 (159)
T 2ls5_A           91 GVTYPLGLDPGADIFAKYALRDAGITRNVLIDREG----KIVKLTRLY-N---------EEEFASLVQQINEML  150 (159)
Confidence            56899999999999999995  4599999999999    455543211 1         114666666665553

>2k6v_A Putative cytochrome C oxidase assembly protein; thioredoxin fold, electron transfer protein, metal binding protein, electron transport; NMR {Thermus thermophilus}

Probab=97.82  E-value=1e-05  Score=53.62  Aligned_cols=57  Identities=21%  Similarity=0.351  Sum_probs=41.6

Q ss_pred             hcceeEEEeCh---hhHHHHhCC---------------ccCceEEEEecCCCCCeeEEEeeecCCCCCCCCCCCcHHHHH
Q 034345            8 FLMWLITLFQS---QDVARDFGA---------------ACTPEFFLFKKDGRRPFQLVYHGQFDDSRPSNNLPVTGRDIR   69 (97)
Q Consensus         8 ~~~fpvL~D~~---q~va~a~gA---------------~~TPe~fvld~~g~~~~~l~Y~G~IDd~~~~~~~~~t~~~L~   69 (97)
                      .++||++.|+.   ++++++||+               ..+|++|||| +|+  ++-+|.|..+.         +...|.
T Consensus        98 ~~~~~~l~d~~~~~~~~~~~~gv~~~~~~~~~~~~~~i~~~P~~~lid-~G~--i~~~~~g~~~~---------~~~~l~  165 (172)
T 2k6v_A           98 HPSFLGLSGSPEAVREAAQTFGVFYQKSQYRGPGEYLVDHTATTFVVK-EGR--LVLLYSPDKAE---------ATDRVV  165 (172)
T ss_dssp             CTTEEEECCCHHHHHHHHHHHTCCEEEEEEEETTEEEEEECCCEEEEE-TTE--EEEEECHHHHT---------CHHHHH
T ss_pred             CCCcEEEeCCHHHHHHHHHhcCeEEEeccCCCCCCceEecCCEEEEEE-CCE--EEEEECCCCCC---------CHHHHH
Confidence            46899999998   689999985               4789999999 994  44455565411         234677


Q ss_pred             HHHHHHH
Q 034345           70 LAIECVL   76 (97)
Q Consensus        70 ~Ai~alL   76 (97)
                      +.|+++|
T Consensus       166 ~~l~~ll  172 (172)
T 2k6v_A          166 ADLQALL  172 (172)
T ss_dssp             HHHHHCC
T ss_pred             HHHHHhC
Confidence            7777654

>3tue_A Tryparedoxin peroxidase; thioredoxin fold, peroxiredoxin, oxidoreductase; 3.00A {Leishmania major} PDB: 1e2y_A

Probab=97.73  E-value=5.1e-05  Score=55.72  Aligned_cols=77  Identities=13%  Similarity=0.139  Sum_probs=42.6

Q ss_pred             hcceeEEEeChhhHHHHhCCccC------ceEEEEecCCCCCeeEEEeeecCCCCCCCCCCCcHHHHHHHHHHHHcCCCC
Q 034345            8 FLMWLITLFQSQDVARDFGAACT------PEFFLFKKDGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECVLSGQPV   81 (97)
Q Consensus         8 ~~~fpvL~D~~q~va~a~gA~~T------Pe~fvld~~g~~~~~l~Y~G~IDd~~~~~~~~~t~~~L~~Ai~alLaG~~v   81 (97)
                      .++||+|-|++++|+++||+-..      -.+||||++|    +|+|.=--+...     .....++-++|++|---+.-
T Consensus       119 ~l~fpllsD~~~~va~~yGv~~~~~g~~~R~tFiIDp~g----~Ir~~~~~~~~~-----gr~~~EvLr~l~aLQ~~~~~  189 (219)
T 3tue_A          119 TMAIPILADKTKNIARSYGVLEESQGVAYRGLFIIDPHG----MLRQITVNDMPV-----GRSVEEVLRLLEAFQFVEKH  189 (219)
T ss_dssp             SCSSCEEECTTSHHHHHTTCEETTTTEECEEEEEECTTS----BEEEEEEECTTC-----CCCHHHHHHHHHHHHHHHHC
T ss_pred             ccccccccCcccHHHHHcCCcccCCCeeEEEEEEECCCC----eEEEEEEecCCC-----CCCHHHHHHHHHHhhhHHhc
Confidence            57999999999999999998543      4689999999    576653212221     11234555667776532111


Q ss_pred             CCCCCCceeecCCC
Q 034345           82 SSNQKPSIKWHPQT   95 (97)
Q Consensus        82 ~~~~t~~IKw~~~~   95 (97)
                      .  ..-+.+|++|+
T Consensus       190 ~--~~~Pa~W~~G~  201 (219)
T 3tue_A          190 G--EVCPANWKKGD  201 (219)
T ss_dssp             --------------
T ss_pred             C--CCcCCCCCCCC
Confidence            1  11237787764

>3eur_A Uncharacterized protein; PSI2,MCSG, conserved protein, structural genomics, protein S initiative, midwest center for structural genomics; HET: MSE; 1.30A {Bacteroides fragilis}

Probab=97.71  E-value=2.6e-05  Score=50.61  Aligned_cols=40  Identities=10%  Similarity=0.184  Sum_probs=35.3

Q ss_pred             hcceeEEEeChhh--HHHHhCCccCceEEEEecCCCCCeeEEEeee
Q 034345            8 FLMWLITLFQSQD--VARDFGAACTPEFFLFKKDGRRPFQLVYHGQ   51 (97)
Q Consensus         8 ~~~fpvL~D~~q~--va~a~gA~~TPe~fvld~~g~~~~~l~Y~G~   51 (97)
                      .++||.+.|.++.  +++.|+...+|++||||++|    +++|++.
T Consensus        90 ~~~~~~~~d~~~~~~~~~~~~v~~~P~~~lid~~G----~i~~~~~  131 (142)
T 3eur_A           90 AKEWTNGYDKELVIKNKNLYDLRAIPTLYLLDKNK----TVLLKDA  131 (142)
T ss_dssp             CTTSEEEECTTCHHHHTTCSCCTTCSEEEEECTTC----BEEEEEE
T ss_pred             ccccccccCccchhhhhhhcCCCcCCeEEEECCCC----cEEecCC
Confidence            3579999999876  78999999999999999999    7888874

>3dwv_A Glutathione peroxidase-like protein; alpha beta, 3-layer(ABA) sandwich, glutaredoxin fold, oxidor peroxidase; 1.41A {Trypanosoma brucei} PDB: 2rm5_A 2rm6_A 3e0u_A

Probab=97.71  E-value=8.5e-06  Score=56.12  Aligned_cols=61  Identities=15%  Similarity=0.093  Sum_probs=38.4

Q ss_pred             hcceeEEE--eChhhHHH------------HhCCccCc---eEEEEecCCCCCeeEEEeeecCCCCCCCCCCCcHHHHHH
Q 034345            8 FLMWLITL--FQSQDVAR------------DFGAACTP---EFFLFKKDGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRL   70 (97)
Q Consensus         8 ~~~fpvL~--D~~q~va~------------a~gA~~TP---e~fvld~~g~~~~~l~Y~G~IDd~~~~~~~~~t~~~L~~   70 (97)
                      .++||++.  |.++..+.            .||....|   +.||||++|+  ++-+|.|..           +...|++
T Consensus       110 ~~~~p~~~~~d~~~~~~~~~~~~l~~~~~~~~~~~~iP~~~~~~liD~~G~--i~~~~~g~~-----------~~~~l~~  176 (187)
T 3dwv_A          110 KAEFPIMAKINVNGENAHPLYEYMKKTKPGILATKAIKWNFTSFLIDRDGV--PVERFSPGA-----------SVKDIEE  176 (187)
T ss_dssp             CCSSCBBCCBCCSCC-CCHHHHHHHHHSCCSBSSSSCCSTTCEEEECTTSC--EEEEECTTC-----------CHHHHHH
T ss_pred             CCCCceeeccccCCcchhHHHHHHHhhcCCccCCCccccceeEEEECCCCC--EEEEECCCC-----------CHHHHHH
Confidence            67899985  77766552            23555667   9999999994  334444432           2347999


Q ss_pred             HHHHHHcCCCC
Q 034345           71 AIECVLSGQPV   81 (97)
Q Consensus        71 Ai~alLaG~~v   81 (97)
                      .|+.+|++.++
T Consensus       177 ~i~~lL~~~~~  187 (187)
T 3dwv_A          177 KLIPLLGSARL  187 (187)
T ss_dssp             HHHHHC-----
T ss_pred             HHHHHHhcCCC
Confidence            99999988653

>3sbc_A Peroxiredoxin TSA1; alpha-beta fold, peroxidase, cytosol, oxidoreductase; 2.80A {Saccharomyces cerevisiae}

Probab=97.69  E-value=0.00011  Score=53.86  Aligned_cols=60  Identities=12%  Similarity=0.133  Sum_probs=44.0

Q ss_pred             hcceeEEEeChhhHHHHhCCc------cCceEEEEecCCCCCeeEEEeeecCCCCCCCCCCCcHHHHHHHHHHHH
Q 034345            8 FLMWLITLFQSQDVARDFGAA------CTPEFFLFKKDGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECVL   76 (97)
Q Consensus         8 ~~~fpvL~D~~q~va~a~gA~------~TPe~fvld~~g~~~~~l~Y~G~IDd~~~~~~~~~t~~~L~~Ai~alL   76 (97)
                      .++||+|.|++++++++||.-      ..+.+||||++|    +|+|.= +.+...    .....++-++|++|-
T Consensus       115 ~l~fpllsD~~~~vak~YGv~~~~~g~~~R~tFiID~~G----~Ir~~~-v~~~~~----grn~dEiLr~l~AlQ  180 (216)
T 3sbc_A          115 PINIPLLADTNHSLSRDYGVLIEEEGVALRGLFIIDPKG----VIRHIT-INDLPV----GRNVDEALRLVEAFQ  180 (216)
T ss_dssp             SCSSCEEECTTSHHHHHHTCEETTTTEECEEEEEECTTS----BEEEEE-EECTTB----CCCHHHHHHHHHHHH
T ss_pred             CcccceEeCCCCHHHHHcCCeeccCCceeeEEEEECCCC----eEEEEE-EcCCCC----CCCHHHHHHHHHHhh
Confidence            479999999999999999974      457899999999    788863 333311    113445666777765

>3uma_A Hypothetical peroxiredoxin protein; nysgrc, PSI biology, structural genomics, NEW YORK structura genomics research consortium; 2.20A {Sinorhizobium meliloti}

Probab=97.69  E-value=7.5e-05  Score=52.42  Aligned_cols=41  Identities=12%  Similarity=-0.043  Sum_probs=33.3

Q ss_pred             hcc--eeEEEeChhhHHHHhCCcc-----------CceEEEEecCCCCCeeEEEeeecC
Q 034345            8 FLM--WLITLFQSQDVARDFGAAC-----------TPEFFLFKKDGRRPFQLVYHGQFD   53 (97)
Q Consensus         8 ~~~--fpvL~D~~q~va~a~gA~~-----------TPe~fvld~~g~~~~~l~Y~G~ID   53 (97)
                      .++  ||+|.|++++++++||+..           .|..|||| +|    +++|+-.-+
T Consensus       114 ~~~~~fp~l~D~~~~va~~yGv~~~~~~~g~g~~~~r~tfiId-dG----~I~~~~~~~  167 (184)
T 3uma_A          114 GGMGKIHFLSDWNAAFTKAIGMEIDLSAGTLGIRSKRYSMLVE-DG----VVKALNIEE  167 (184)
T ss_dssp             TCTTTSEEEECTTCHHHHHTTCEEEEGGGTCEEEECCEEEEEE-TT----EEEEEEECS
T ss_pred             CCCCceEEEEcCchHHHHHcCCceeccccCCcccceeEEEEEC-CC----EEEEEEEeC
Confidence            456  9999999999999999863           47899996 88    677775433

>4fo5_A Thioredoxin-like protein; AHPC/TSA family protein, structural genomics, joint center F structural genomics, JCSG; 2.02A {Parabacteroides distasonis}

Probab=97.59  E-value=6.8e-05  Score=48.64  Aligned_cols=39  Identities=10%  Similarity=0.059  Sum_probs=33.8

Q ss_pred             hcce-eEEEeCh---hhHHHHhCCccCceEEEEecCCCCCeeEEEee
Q 034345            8 FLMW-LITLFQS---QDVARDFGAACTPEFFLFKKDGRRPFQLVYHG   50 (97)
Q Consensus         8 ~~~f-pvL~D~~---q~va~a~gA~~TPe~fvld~~g~~~~~l~Y~G   50 (97)
                      .++| +++.|..   +++++.||...+|+.||||++|    ++++++
T Consensus        88 ~~~~~~~~~d~~~~~~~~~~~~~v~~~P~~~lid~~G----~i~~~~  130 (143)
T 4fo5_A           88 KLDLSTQFHEGLGKESELYKKYDLRKGFKNFLINDEG----VIIAAN  130 (143)
T ss_dssp             TCCGGGEEECTTGGGSHHHHHTTGGGCCCEEEECTTS----BEEEES
T ss_pred             CCCCceeeecccccchHHHHHcCCCCCCcEEEECCCC----EEEEcc
Confidence            4677 7888884   6899999999999999999999    788875

>2l5l_A Thioredoxin; structural genomics, electron transport, PSI-2, protein STRU initiative; NMR {Bacteroides vulgatus}

Probab=97.57  E-value=0.00014  Score=47.25  Aligned_cols=55  Identities=18%  Similarity=0.304  Sum_probs=44.4

Q ss_pred             EeChhhHHHHhCCccCceEEEEecCCCCCeeEEEeeecCCCCCCCCCCCcHHHHHHHHHHHHcCCCCCC
Q 034345           15 LFQSQDVARDFGAACTPEFFLFKKDGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECVLSGQPVSS   83 (97)
Q Consensus        15 ~D~~q~va~a~gA~~TPe~fvld~~g~~~~~l~Y~G~IDd~~~~~~~~~t~~~L~~Ai~alLaG~~v~~   83 (97)
                      .|+..++++.||...+|+++++|++|+   .++|.|.++           ...|++.|+.++....+..
T Consensus        78 ~~~~~~l~~~~~v~~~Pt~~~~~~~G~---~~~~~G~~~-----------~~~l~~~l~~~~~~~~~~~  132 (136)
T 2l5l_A           78 TEKEQELAGAFGIRSIPSILFIPMEGK---PEMAQGAMP-----------KASFKKAIDEFLLKKEGHH  132 (136)
T ss_dssp             TTTCHHHHHHTTCCSSCEEEEECSSSC---CEEEESCCC-----------HHHHHHHHHHHHTSCTTSS
T ss_pred             CCCCHHHHHHcCCCCCCEEEEECCCCc---EEEEeCCCC-----------HHHHHHHHHHHhhccCCCC
Confidence            466778999999999999999999996   558888653           3479999999887765543

>2l57_A Uncharacterized protein; structural genomics, unknown function, thioredoxin-like, PSI protein structure initiative; NMR {Clostridium perfringens}

Probab=97.57  E-value=0.00012  Score=46.65  Aligned_cols=55  Identities=16%  Similarity=0.207  Sum_probs=42.5

Q ss_pred             EeChhhHHHHhCCccCceEEEEecCCCCCeeEEEeeecCCCCCCCCCCCcHHHHHHHHHHHHcCCCCC
Q 034345           15 LFQSQDVARDFGAACTPEFFLFKKDGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECVLSGQPVS   82 (97)
Q Consensus        15 ~D~~q~va~a~gA~~TPe~fvld~~g~~~~~l~Y~G~IDd~~~~~~~~~t~~~L~~Ai~alLaG~~v~   82 (97)
                      .|+..++++.||...+|+++++|++|+  ..-+|.|..+           ...|.+.|+.++...+..
T Consensus        68 ~d~~~~~~~~~~v~~~Pt~~~~~~~G~--~~~~~~G~~~-----------~~~l~~~l~~~~~~~~~~  122 (126)
T 2l57_A           68 EEKNIDLAYKYDANIVPTTVFLDKEGN--KFYVHQGLMR-----------KNNIETILNSLGVKEGHH  122 (126)
T ss_dssp             SSHHHHHHHHTTCCSSSEEEEECTTCC--EEEEEESCCC-----------HHHHHHHHHHHCCCCCCC
T ss_pred             CCchHHHHHHcCCcceeEEEEECCCCC--EEEEecCCCC-----------HHHHHHHHHHHhcccccc
Confidence            467789999999999999999999995  3445667543           347899998887766543

>2p5q_A Glutathione peroxidase 5; thioredoxin fold, oxidoreductase; 2.00A {Populus trichocarpa x populusdeltoides} PDB: 2p5r_A

Probab=97.57  E-value=3.3e-05  Score=51.01  Aligned_cols=58  Identities=19%  Similarity=0.133  Sum_probs=40.6

Q ss_pred             hcceeEE--EeChhhHHH---------HhCC--ccCc---eEEEEecCCCCCeeEEEeeecCCCCCCCCCCCcHHHHHHH
Q 034345            8 FLMWLIT--LFQSQDVAR---------DFGA--ACTP---EFFLFKKDGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLA   71 (97)
Q Consensus         8 ~~~fpvL--~D~~q~va~---------a~gA--~~TP---e~fvld~~g~~~~~l~Y~G~IDd~~~~~~~~~t~~~L~~A   71 (97)
                      .++||++  .|.++.++.         .+|.  ..+|   +.||||++|+  ++-+|.|..+.           ..|++.
T Consensus        96 ~~~~~~~~~~d~~~~~~~~~~~~l~~~~~~~~~~~~p~~~~~~lid~~G~--i~~~~~g~~~~-----------~~l~~~  162 (170)
T 2p5q_A           96 KSEFPIFDKIDVNGENASPLYRFLKLGKWGIFGDDIQWNFAKFLVNKDGQ--VVDRYYPTTSP-----------LSLERD  162 (170)
T ss_dssp             CCCSCBBCCCBSSSTTBCHHHHHHHTHHHHTTCSCCCSTTCEEEECTTSC--EEEEECTTSCG-----------GGGHHH
T ss_pred             CCCceeEeeeccCCCchHHHHHHHHhcCCCccCCcccccccEEEECCCCC--EEEeeCCCCCH-----------HHHHHH
Confidence            5789999  788877652         2366  6778   9999999995  34445554322           268888


Q ss_pred             HHHHHcC
Q 034345           72 IECVLSG   78 (97)
Q Consensus        72 i~alLaG   78 (97)
                      |+.+|+.
T Consensus       163 i~~ll~~  169 (170)
T 2p5q_A          163 IKQLLEI  169 (170)
T ss_dssp             HHHHTTC
T ss_pred             HHHHhhc
Confidence            9888763

>2pwj_A Mitochondrial peroxiredoxin; alpha and beta protein, oxidoreductase; 2.80A {Pisum sativum}

Probab=97.54  E-value=0.00015  Score=49.76  Aligned_cols=38  Identities=5%  Similarity=-0.202  Sum_probs=31.8

Q ss_pred             cceeEEEeChhhHHHHhCCcc-----------CceEEEEecCCCCCeeEEEeee
Q 034345            9 LMWLITLFQSQDVARDFGAAC-----------TPEFFLFKKDGRRPFQLVYHGQ   51 (97)
Q Consensus         9 ~~fpvL~D~~q~va~a~gA~~-----------TPe~fvld~~g~~~~~l~Y~G~   51 (97)
                      ++||+|.|++++++++||+..           .|..|+|| +|    +++|+-.
T Consensus       104 ~~fp~l~D~~~~~~~~ygv~~~~~~~~~g~~~~~~t~~I~-~G----~I~~~~~  152 (171)
T 2pwj_A          104 DAIEFYGDFDGSFHKSLELTTDLSAGLLGIRSERWSAYVV-DG----KVKALNV  152 (171)
T ss_dssp             TTSEEEECTTCHHHHHHTCEEECTTTTCCEEECCEEEEEE-TT----EEEEEEE
T ss_pred             CceEEEECCccHHHHHhCCccccccccCCcccceeEEEEE-CC----EEEEEEe
Confidence            479999999999999999864           46799999 88    6777643

>3hxs_A Thioredoxin, TRXP; electron transport; 2.00A {Bacteroides fragilis} PDB: 3hyp_A

Probab=97.50  E-value=0.0001  Score=47.69  Aligned_cols=53  Identities=23%  Similarity=0.400  Sum_probs=42.3

Q ss_pred             eEEEeChhhHHHHhCCccCceEEEEecCCCCCeeEEEeeecCCCCCCCCCCCcHHHHHHHHHHHHcC
Q 034345           12 LITLFQSQDVARDFGAACTPEFFLFKKDGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECVLSG   78 (97)
Q Consensus        12 pvL~D~~q~va~a~gA~~TPe~fvld~~g~~~~~l~Y~G~IDd~~~~~~~~~t~~~L~~Ai~alLaG   78 (97)
                      .+-.|...++++.||...+|++++++++|+   .++|.|.++           ...|.+.|+.+|+.
T Consensus        88 ~v~~~~~~~~~~~~~v~~~Pt~~~~~~~g~---~~~~~G~~~-----------~~~l~~~l~~~l~k  140 (141)
T 3hxs_A           88 KVNVDKEPELARDFGIQSIPTIWFVPMKGE---PQVNMGALS-----------KEQLKGYIDKVLLK  140 (141)
T ss_dssp             EEETTTCHHHHHHTTCCSSSEEEEECSSSC---CEEEESCCC-----------HHHHHHHHHHTTC-
T ss_pred             EEECCCCHHHHHHcCCCCcCEEEEEeCCCC---EEEEeCCCC-----------HHHHHHHHHHHHcc
Confidence            345677889999999999999999999996   568888653           33788888888753

>3cmi_A Peroxiredoxin HYR1; thioredoxin-like fold, oxidoreductase, peroxidase, redox-ACT center; 2.02A {Saccharomyces cerevisiae}

Probab=97.49  E-value=4.9e-05  Score=51.07  Aligned_cols=58  Identities=19%  Similarity=0.138  Sum_probs=40.0

Q ss_pred             hcceeEEEeCh--hhH---------HHHhCCccCc------eEEEEecCCCCCeeEEEeeecCCCCCCCCCCCcHHHHHH
Q 034345            8 FLMWLITLFQS--QDV---------ARDFGAACTP------EFFLFKKDGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRL   70 (97)
Q Consensus         8 ~~~fpvL~D~~--q~v---------a~a~gA~~TP------e~fvld~~g~~~~~l~Y~G~IDd~~~~~~~~~t~~~L~~   70 (97)
                      .++||++.|.+  +..         .+.||...+|      ..||||++|+  ++-+|.|.++           ...|++
T Consensus        95 ~~~~p~~~d~d~~~~~~~~~~~~~~~~~~~v~~~P~i~~~~~~~lid~~G~--i~~~~~g~~~-----------~~~l~~  161 (171)
T 3cmi_A           95 GVTFPIMKKIDVNGGNEDPVYKFLKSQKSGMLGLRGIKWNFEKFLVDKKGK--VYERYSSLTK-----------PSSLSE  161 (171)
T ss_dssp             CCCSCBBCCCBSSSTTBCHHHHHHHHHSCCSSSCCSCCSTTCEEEECSSSC--EEEEECTTSC-----------GGGGHH
T ss_pred             CCCceEEeeccCCCccchHHHHHHHhccCCcCCCCcccccceEEEECCCCC--EEEEeCCCCC-----------HHHHHH
Confidence            57899998643  332         1457888999      9999999994  3444445432           226888


Q ss_pred             HHHHHHcC
Q 034345           71 AIECVLSG   78 (97)
Q Consensus        71 Ai~alLaG   78 (97)
                      .|+++|+.
T Consensus       162 ~i~~ll~~  169 (171)
T 3cmi_A          162 TIEELLKE  169 (171)
T ss_dssp             HHHHHHTC
T ss_pred             HHHHHHHh
Confidence            99988863

>2vup_A Glutathione peroxidase-like protein; oxidoreductase, trypanothione, dithiol-dependant peroxidase; 2.10A {Trypanosoma brucei}

Probab=97.49  E-value=3.8e-05  Score=52.80  Aligned_cols=59  Identities=19%  Similarity=0.102  Sum_probs=42.2

Q ss_pred             hcceeEEE--eChhhHHH---------HhCCccCc------eEEEEecCCCCCeeEEEeeecCCCCCCCCCCCcHHHHHH
Q 034345            8 FLMWLITL--FQSQDVAR---------DFGAACTP------EFFLFKKDGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRL   70 (97)
Q Consensus         8 ~~~fpvL~--D~~q~va~---------a~gA~~TP------e~fvld~~g~~~~~l~Y~G~IDd~~~~~~~~~t~~~L~~   70 (97)
                      .++||++.  |.++.+++         .||...+|      ..||||++|+  ++-+|.|.++           ...|.+
T Consensus       112 ~~~~p~l~~~D~~~~~~~~~~~~l~~~~~~v~~~P~i~~~~~~~lid~~G~--i~~~~~g~~~-----------~~~l~~  178 (190)
T 2vup_A          112 KAEFPIMAKINVNGENAHPLYEYMKKTKPGILKTKAIKWNFTSFLIDRDGV--PVERFSPGAS-----------VKDIEK  178 (190)
T ss_dssp             CCCSCBBCCCBSSSTTBCHHHHHHHHHSCCGGGCCSCCSTTCEEEECTTSC--EEEEECTTCC-----------HHHHHH
T ss_pred             CCCeEEEeecccCcccccHHHHHHHhhcCCcCCCccccccceEEEECCCCc--EEEEECCCCC-----------HHHHHH
Confidence            57899986  77776543         35888899      9999999995  3334445432           337899


Q ss_pred             HHHHHHcCC
Q 034345           71 AIECVLSGQ   79 (97)
Q Consensus        71 Ai~alLaG~   79 (97)
                      .|+++|+..
T Consensus       179 ~i~~ll~~~  187 (190)
T 2vup_A          179 KLIPLLEST  187 (190)
T ss_dssp             HHHHHHHCC
T ss_pred             HHHHHHhhc
Confidence            999998753

>2kuc_A Putative disulphide-isomerase; structural genomics, thioredo PSI-2, protein structure initiative; NMR {Bacteroides thetaiotaomicron}

Probab=97.42  E-value=0.00028  Score=44.83  Aligned_cols=52  Identities=10%  Similarity=0.273  Sum_probs=39.9

Q ss_pred             ChhhHHHHhCCccCceEEEEecCCCCCeeEEEeeecCCCCCCCCCCCcHHHHHHHHHHHHcCCCC
Q 034345           17 QSQDVARDFGAACTPEFFLFKKDGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECVLSGQPV   81 (97)
Q Consensus        17 ~~q~va~a~gA~~TPe~fvld~~g~~~~~l~Y~G~IDd~~~~~~~~~t~~~L~~Ai~alLaG~~v   81 (97)
                      +...+++.||...+|+++++|++|+  +..+|.|..+           ...|.+.|+.++.....
T Consensus        74 ~~~~~~~~~~v~~~Pt~~~~d~~G~--~~~~~~G~~~-----------~~~l~~~l~~~~~~~~~  125 (130)
T 2kuc_A           74 EGVELRKKYGVHAYPTLLFINSSGE--VVYRLVGAED-----------APELLKKVKLGVESEGH  125 (130)
T ss_dssp             THHHHHHHTTCCSSCEEEEECTTSC--EEEEEESCCC-----------HHHHHHHHHHHHSCCC-
T ss_pred             chHHHHHHcCCCCCCEEEEECCCCc--EEEEecCCCC-----------HHHHHHHHHHHHHhccc
Confidence            4678999999999999999999995  3445667532           34788899988876543

>1nm3_A Protein HI0572; hybrid, peroxiredoxin, glutaredoxin, electron transport; 2.80A {Haemophilus influenzae} SCOP: c.47.1.1 c.47.1.10

Probab=97.42  E-value=0.00061  Score=48.42  Aligned_cols=40  Identities=10%  Similarity=-0.137  Sum_probs=33.2

Q ss_pred             hcc-eeEEEeChhhHHHHhCCcc-----------CceEEEEecCCCCCeeEEEeeec
Q 034345            8 FLM-WLITLFQSQDVARDFGAAC-----------TPEFFLFKKDGRRPFQLVYHGQF   52 (97)
Q Consensus         8 ~~~-fpvL~D~~q~va~a~gA~~-----------TPe~fvld~~g~~~~~l~Y~G~I   52 (97)
                      .++ ||+|.|++++++++||+..           .|.+||| ++|    +++|+..-
T Consensus        91 ~~~~~~~l~D~~~~~~~~~gv~~~~~~~g~~~~~~p~t~li-~~G----~i~~~~~~  142 (241)
T 1nm3_A           91 KSENISFIPDGNGEFTEGMGMLVGKEDLGFGKRSWRYSMLV-KNG----VVEKMFIE  142 (241)
T ss_dssp             TCTTSEEEECTTSHHHHHTTCEEECTTTTCCEEECCEEEEE-ETT----EEEEEEEC
T ss_pred             CCCceEEEECCCcHHHHHhCceeecccccCcccceeEEEEE-ECC----EEEEEEEe
Confidence            355 9999999999999999873           4899999 999    67777543

>2gs3_A PHGPX, GPX-4, phospholipid hydroperoxide glutathione peroxidase; GSHPX-4,phospholipid hydroperoxide; 1.90A {Homo sapiens}

Probab=97.34  E-value=5.5e-05  Score=51.80  Aligned_cols=56  Identities=16%  Similarity=0.071  Sum_probs=36.0

Q ss_pred             hcceeEEE--eChhhHHH-Hh----------CCc-----cCceEEEEecCCCCCeeEEEeeecCCCCCCCCCCCcHHHHH
Q 034345            8 FLMWLITL--FQSQDVAR-DF----------GAA-----CTPEFFLFKKDGRRPFQLVYHGQFDDSRPSNNLPVTGRDIR   69 (97)
Q Consensus         8 ~~~fpvL~--D~~q~va~-a~----------gA~-----~TPe~fvld~~g~~~~~l~Y~G~IDd~~~~~~~~~t~~~L~   69 (97)
                      .++||++.  |.++..+. .|          |..     .+|+.||||++|+  ++.+|.|..+.           ..|+
T Consensus       112 ~~~~p~~~~~d~~~~~~~~~~~~l~~~~~~~g~~~~~i~~~P~~~lid~~G~--i~~~~~g~~~~-----------~~l~  178 (185)
T 2gs3_A          112 NVKFDMFSKICVNGDDAHPLWKWMKIQPKGKGILGNAIKWNFTKFLIDKNGC--VVKRYGPMEEP-----------LVIE  178 (185)
T ss_dssp             TCCSEEBCCCBSSSTTBCHHHHHHTTSGGGCCSSSSSCCSSCCEEEECTTSC--EEEEECTTSCG-----------GGGG
T ss_pred             CCCCeeeeeeccCChhhhHHHHHHHhhcccccccCCcccccceEEEECCCCC--EEEeeCCCCCH-----------HHHH
Confidence            56799996  66776553 44          433     3699999999995  44455564322           2466


Q ss_pred             HHHHHHH
Q 034345           70 LAIECVL   76 (97)
Q Consensus        70 ~Ai~alL   76 (97)
                      ++|+.+|
T Consensus       179 ~~i~~lL  185 (185)
T 2gs3_A          179 KDLPHYF  185 (185)
T ss_dssp             GGHHHHC
T ss_pred             HHHHHhC
Confidence            6676654

>2ju5_A Thioredoxin disulfide isomerase; protein, oxidoreductase; NMR {Chlamydophila pneumoniae}

Probab=97.34  E-value=0.00051  Score=45.85  Aligned_cols=51  Identities=14%  Similarity=0.206  Sum_probs=37.4

Q ss_pred             eChhhHHHHhCCccCceEEEEecCCCCCeeEEEeeecCCCCCCCCCCCcHHHHHHHHHHHHcC
Q 034345           16 FQSQDVARDFGAACTPEFFLFKKDGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECVLSG   78 (97)
Q Consensus        16 D~~q~va~a~gA~~TPe~fvld~~g~~~~~l~Y~G~IDd~~~~~~~~~t~~~L~~Ai~alLaG   78 (97)
                      |..+++++.||...+|+++++|++|+  +.-++ |..+.         +...+.+.|+.+++.
T Consensus       103 ~~~~~l~~~~~v~~~Pt~~~~d~~G~--~~~~~-G~~~~---------~~~~l~~~l~~~l~~  153 (154)
T 2ju5_A          103 QKNQELKAQYKVTGFPELVFIDAEGK--QLARM-GFEPG---------GGAAYVSKVKSALKL  153 (154)
T ss_dssp             HHHHHHHHHTTCCSSSEEEEECTTCC--EEEEE-CCCTT---------CHHHHHHHHHHHHTC
T ss_pred             hhHHHHHHHcCCCCCCEEEEEcCCCC--EEEEe-cCCCC---------CHHHHHHHHHHHHhc
Confidence            33468999999999999999999995  33344 65411         244688888888764

>2obi_A PHGPX, GPX-4, phospholipid hydroperoxide glutathione peroxidase (GPX4); human GPX4, selenoprotein, thioredoxin-fold, anti-oxidatve defense system; 1.55A {Homo sapiens}

Probab=97.31  E-value=4.4e-05  Score=51.94  Aligned_cols=42  Identities=19%  Similarity=0.118  Sum_probs=29.2

Q ss_pred             hcceeEEE--eChhhHHH-Hh----------CCc-----cCceEEEEecCCCCCeeEEEeee
Q 034345            8 FLMWLITL--FQSQDVAR-DF----------GAA-----CTPEFFLFKKDGRRPFQLVYHGQ   51 (97)
Q Consensus         8 ~~~fpvL~--D~~q~va~-a~----------gA~-----~TPe~fvld~~g~~~~~l~Y~G~   51 (97)
                      .++||++.  |.++..+. .|          |..     .+|+.||||++|+  ++-+|.|.
T Consensus       110 ~~~~p~~~~~d~~~~~~~~~~~~l~~~~~~~g~~~~~i~~~P~~~lid~~G~--i~~~~~g~  169 (183)
T 2obi_A          110 NVKFDMFSKICVNGDDAHPLWKWMKIQPKGKGILGNAIKWNFTKFLIDKNGC--VVKRYGPM  169 (183)
T ss_dssp             TCCSEEBCCCCCSSTTSCHHHHHHHTSTTTCCSSSSSCCSTTCEEEECTTSC--EEEEECTT
T ss_pred             CCCceEEeeeccCCcchhHHHHHhhccCCCCCcccccccccceEEEECCCCC--EEEEeCCC
Confidence            56899997  87777653 34          433     3599999999995  44455564

>2f8a_A Glutathione peroxidase 1; thioredoxin fold, structural genomics, structural genomics consortium, SGC, oxidoreductase; 1.50A {Homo sapiens} SCOP: c.47.1.10 PDB: 1gp1_A 2he3_A

Probab=97.27  E-value=0.00013  Score=51.58  Aligned_cols=38  Identities=37%  Similarity=0.385  Sum_probs=27.3

Q ss_pred             CccCceEEEEecCCCCCeeEEEeeecCCCCCCCCCCCcHHHHHHHHHHHHc
Q 034345           27 AACTPEFFLFKKDGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECVLS   77 (97)
Q Consensus        27 A~~TPe~fvld~~g~~~~~l~Y~G~IDd~~~~~~~~~t~~~L~~Ai~alLa   77 (97)
                      ...+|+.||||++|+  ++-+|.|..+.           ..|+++|+.+|+
T Consensus       170 i~~~p~tflID~~G~--i~~~~~g~~~~-----------~~l~~~I~~ll~  207 (208)
T 2f8a_A          170 VAWNFEKFLVGPDGV--PLRRYSRRFQT-----------IDIEPDIEALLS  207 (208)
T ss_dssp             CCSTTCEEEECTTSC--EEEEECTTSCG-----------GGGHHHHHHHHC
T ss_pred             cccCceEEEEcCCCc--EEEEeCCCCCH-----------HHHHHHHHHHhh
Confidence            345699999999995  45556665432           258888988875

>2p31_A CL683, glutathione peroxidase 7; thioredoxin fold, NPGPX, phospholipid hydroperoxidase, struc genomics, structural genomics consortium, SGC; 2.00A {Homo sapiens}

Probab=97.27  E-value=2.5e-05  Score=53.33  Aligned_cols=57  Identities=12%  Similarity=0.130  Sum_probs=38.9

Q ss_pred             hhcceeEEE--eChhhHHH---HhCCccCc-------eEEEEecCCCCCeeEEEeeecCCCCCCCCCCCcHHHHHHHHHH
Q 034345            7 LFLMWLITL--FQSQDVAR---DFGAACTP-------EFFLFKKDGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIEC   74 (97)
Q Consensus         7 ~~~~fpvL~--D~~q~va~---a~gA~~TP-------e~fvld~~g~~~~~l~Y~G~IDd~~~~~~~~~t~~~L~~Ai~a   74 (97)
                      ..++||++.  |.++..+.   .|+...+|       ..||||++|+  ++-+|.|..+           ...|+++|++
T Consensus       112 ~~~~~p~~~~~d~~g~~~~~~~~~~~~~~P~~~~~~~~~~lid~~G~--i~~~~~g~~~-----------~~~l~~~i~~  178 (181)
T 2p31_A          112 YSVSFPMFSKIAVTGTGAHPAFKYLAQTSGKEPTWNFWKYLVAPDGK--VVGAWDPTVS-----------VEEVRPQITA  178 (181)
T ss_dssp             HCCCSCBBCCCCCSSTTSCHHHHHHHHHHSCCCCSTTCEEEECTTSC--EEEEECTTSC-----------HHHHHHHHHT
T ss_pred             cCCCceeEeecccCCccchhhhhhhhhcCCCccccceeEEEEcCCCC--EEEEeCCCCC-----------HHHHHHHHHH
Confidence            357899995  56665543   45577889       9999999995  3444555322           3478888887


Q ss_pred             HH
Q 034345           75 VL   76 (97)
Q Consensus        75 lL   76 (97)
                      +|
T Consensus       179 ll  180 (181)
T 2p31_A          179 LV  180 (181)
T ss_dssp             TC
T ss_pred             Hh
Confidence            76

>3me7_A Putative uncharacterized protein; electron transfer protein, electron transport, structural GE PSI-2, protein structure initiative; 1.50A {Aquifex aeolicus} PDB: 3me8_A

Probab=97.23  E-value=0.00038  Score=47.21  Aligned_cols=54  Identities=4%  Similarity=-0.090  Sum_probs=38.8

Q ss_pred             ChhhHHHHhCC---------ccCceEEEEecCCCCCeeEEEeeecCCCCCCCCCCCcHHHHHHHHHHHHcCCCCC
Q 034345           17 QSQDVARDFGA---------ACTPEFFLFKKDGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECVLSGQPVS   82 (97)
Q Consensus        17 ~~q~va~a~gA---------~~TPe~fvld~~g~~~~~l~Y~G~IDd~~~~~~~~~t~~~L~~Ai~alLaG~~v~   82 (97)
                      +.++++++||.         ..+|.+||||++|+  ++-+|.|. +         ....++..+|++++.-.++.
T Consensus       105 ~~~~~~~~~g~~~~~~~~~~~~~~~~~lID~~G~--i~~~~~g~-~---------~~~~~i~~~l~~~~~~~~~~  167 (170)
T 3me7_A          105 DLFKLLDAIDFRFMTAGNDFIHPNVVVVLSPELQ--IKDYIYGV-N---------YNYLEFVNALRLARGEGHHH  167 (170)
T ss_dssp             HHHHHHHHTTCCCEEETTEEECCCEEEEECTTSB--EEEEEESS-S---------CCHHHHHHHHHHHTTCSCTT
T ss_pred             HHHHHHHHCCeEEecCCCccccCceEEEECCCCe--EEEEEeCC-C---------CCHHHHHHHHHHhhcccccc
Confidence            55789999873         57899999999995  44445664 1         12558999999888766554

>3fk8_A Disulphide isomerase; APC61824.1, xylella fastidiosa temecul structural genomics, PSI-2, protein structure initiative; 1.30A {Xylella fastidiosa}

Probab=97.16  E-value=0.00087  Score=42.86  Aligned_cols=52  Identities=15%  Similarity=0.388  Sum_probs=38.6

Q ss_pred             eChhhHHHHhCC---ccCceEEEEecCCCCCeeEEEe--e-ecCCCCCCCCCCCcHHHHHHHHHHHH
Q 034345           16 FQSQDVARDFGA---ACTPEFFLFKKDGRRPFQLVYH--G-QFDDSRPSNNLPVTGRDIRLAIECVL   76 (97)
Q Consensus        16 D~~q~va~a~gA---~~TPe~fvld~~g~~~~~l~Y~--G-~IDd~~~~~~~~~t~~~L~~Ai~alL   76 (97)
                      |...++++.||.   ..+|+++++|++|    ++.++  | .+.+..     ..+...+++.|+.+.
T Consensus        75 ~~~~~l~~~~~v~~~~~~Pt~~~~d~~G----~~~~~~~g~~~~~~~-----~~~~~~l~~~l~~l~  132 (133)
T 3fk8_A           75 DRNLELSQAYGDPIQDGIPAVVVVNSDG----KVRYTTKGGELANAR-----KMSDQGIYDFFAKIT  132 (133)
T ss_dssp             TSSHHHHHHTTCGGGGCSSEEEEECTTS----CEEEECCSCTTTTGG-----GSCHHHHHHHHHHHH
T ss_pred             cchHHHHHHhCCccCCccceEEEECCCC----CEEEEecCCcccccc-----cCCHHHHHHHHHHhc
Confidence            678899999999   9999999999999    45555  3 443331     234567888777764

>2lus_A Thioredoxion; CR-Trp16, oxidoreductase; NMR {Carcinoscorpius rotundicauda}

Probab=96.17  E-value=7.5e-05  Score=47.81  Aligned_cols=40  Identities=20%  Similarity=0.310  Sum_probs=32.0

Q ss_pred             eeEEEeChhhHHHHhCCccCceEEEEecCCCCCeeEEEeeecCC
Q 034345           11 WLITLFQSQDVARDFGAACTPEFFLFKKDGRRPFQLVYHGQFDD   54 (97)
Q Consensus        11 fpvL~D~~q~va~a~gA~~TPe~fvld~~g~~~~~l~Y~G~IDd   54 (97)
                      +|+..|..++++++||...+|++||||++|    +++++...++
T Consensus        90 ~~~~~~~~~~~~~~~~v~~~P~~~lid~~G----~i~~~~~~~~  129 (143)
T 2lus_A           90 IPYRSGPASNVTAKYGITGIPALVIVKKDG----TLISMNGRGE  129 (143)
Confidence            556677778999999999999999999999    5666544333

>1thx_A Thioredoxin, thioredoxin 2; oxido-reductase, electron transport; 1.60A {Nostoc SP} SCOP: c.47.1.1

Probab=97.10  E-value=0.00059  Score=41.95  Aligned_cols=50  Identities=10%  Similarity=0.147  Sum_probs=37.2

Q ss_pred             EeChhhHHHHhCCccCceEEEEecCCCCCeeEEEeeecCCCCCCCCCCCcHHHHHHHHHHHHcC
Q 034345           15 LFQSQDVARDFGAACTPEFFLFKKDGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECVLSG   78 (97)
Q Consensus        15 ~D~~q~va~a~gA~~TPe~fvld~~g~~~~~l~Y~G~IDd~~~~~~~~~t~~~L~~Ai~alLaG   78 (97)
                      .|...++++.||...+|+++++ ++|+  ..-+|.|..+           ...|.+.|++++.+
T Consensus        65 ~~~~~~~~~~~~v~~~Pt~~~~-~~G~--~~~~~~g~~~-----------~~~l~~~l~~~l~~  114 (115)
T 1thx_A           65 IDPNPTTVKKYKVEGVPALRLV-KGEQ--ILDSTEGVIS-----------KDKLLSFLDTHLNN  114 (115)
T ss_dssp             STTCHHHHHHTTCCSSSEEEEE-ETTE--EEEEEESCCC-----------HHHHHHHHHHHHC-
T ss_pred             cCCCHHHHHHcCCCceeEEEEE-cCCE--EEEEecCCCC-----------HHHHHHHHHHHhcC
Confidence            4667789999999999999999 7884  2334566532           34788899888764

>1i5g_A Tryparedoxin II; electron transport; HET: TS5; 1.40A {Crithidia fasciculata} SCOP: c.47.1.10 PDB: 1o6j_A 1o81_A 1oc8_A 1oc9_B 1fg4_A 1oc9_A

Probab=97.09  E-value=0.00016  Score=46.80  Aligned_cols=38  Identities=8%  Similarity=0.095  Sum_probs=30.4

Q ss_pred             ceeEEE-eChhhHHHHhCCccCceEEEEe-cCCCCCeeEEEeee
Q 034345           10 MWLITL-FQSQDVARDFGAACTPEFFLFK-KDGRRPFQLVYHGQ   51 (97)
Q Consensus        10 ~fpvL~-D~~q~va~a~gA~~TPe~fvld-~~g~~~~~l~Y~G~   51 (97)
                      .||++. |..++++++||...+|++|||| ++|    +++++..
T Consensus        88 ~~~~~~~d~~~~~~~~~~v~~~P~~~lid~~~G----~i~~~~~  127 (144)
T 1i5g_A           88 ALPFEDRKGMEFLTTGFDVKSIPTLVGVEADSG----NIITTQA  127 (144)
T ss_dssp             ECCTTCHHHHHHHHHHTTCCSSSEEEEEETTTC----CEEESCH
T ss_pred             ccccCchHHHHHHHHHcCCCCCCEEEEEECCCC----cEEeccc
Confidence            345444 5678999999999999999999 899    5777654

>2trx_A Thioredoxin; electron transport; 1.68A {Escherichia coli} SCOP: c.47.1.1 PDB: 1skr_B* 1skw_B* 1sl0_B* 1sks_B* 1sl2_B* 1t7p_B* 1t8e_B* 1tk0_B* 1tk5_B* 1tk8_B* 1tkd_B* 1sl1_B* 1x9s_B* 1x9w_B* 1xoa_A 1xob_A 1zyq_B* 2ajq_B* 2bto_T* 2h6x_A ...

Probab=97.08  E-value=0.00065  Score=41.53  Aligned_cols=49  Identities=20%  Similarity=0.396  Sum_probs=36.5

Q ss_pred             EeChhhHHHHhCCccCceEEEEecCCCCCeeEEEeeecCCCCCCCCCCCcHHHHHHHHHHHHc
Q 034345           15 LFQSQDVARDFGAACTPEFFLFKKDGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECVLS   77 (97)
Q Consensus        15 ~D~~q~va~a~gA~~TPe~fvld~~g~~~~~l~Y~G~IDd~~~~~~~~~t~~~L~~Ai~alLa   77 (97)
                      .|...++++.||...+|+++++ ++|+  ..-+|.|..+           ...|.+.|+++|+
T Consensus        60 ~~~~~~~~~~~~v~~~Pt~~~~-~~G~--~~~~~~G~~~-----------~~~l~~~l~~~l~  108 (108)
T 2trx_A           60 IDQNPGTAPKYGIRGIPTLLLF-KNGE--VAATKVGALS-----------KGQLKEFLDANLA  108 (108)
T ss_dssp             TTTCTTHHHHTTCCSSSEEEEE-ETTE--EEEEEESCCC-----------HHHHHHHHHHHHC
T ss_pred             CCCCHHHHHHcCCcccCEEEEE-eCCE--EEEEEecCCC-----------HHHHHHHHHHhhC
Confidence            3667889999999999999999 7774  2345666532           3478888888764

>2b7k_A SCO1 protein; metallochaperone, cytochrome C oxidase, metal binding protein; 1.80A {Saccharomyces cerevisiae} SCOP: c.47.1.10 PDB: 2b7j_A

Probab=97.04  E-value=0.00096  Score=46.30  Aligned_cols=42  Identities=14%  Similarity=0.213  Sum_probs=27.9

Q ss_pred             cceeEEE---eChhhHHHHhCCc-cC---------------ceEEEEecCCCCCeeEEEeeec
Q 034345            9 LMWLITL---FQSQDVARDFGAA-CT---------------PEFFLFKKDGRRPFQLVYHGQF   52 (97)
Q Consensus         9 ~~fpvL~---D~~q~va~a~gA~-~T---------------Pe~fvld~~g~~~~~l~Y~G~I   52 (97)
                      .+|+.|.   |+.+.++++||+. ..               |.+||||++|+  ++-+|.|.+
T Consensus       105 ~~~~~l~~~~d~~~~~~~~~gv~~~~p~~~~~~~~~~~~~~~~~~liD~~G~--i~~~~~g~~  165 (200)
T 2b7k_A          105 PSILGLTGTFDEVKNACKKYRVYFSTPPNVKPGQDYLVDHSIFFYLMDPEGQ--FVDALGRNY  165 (200)
T ss_dssp             TTCEEEECCHHHHHHHHHHTTC--------------CTTTCCCEEEECTTSC--EEEEECTTC
T ss_pred             CCceEEeCCHHHHHHHHHHcCcEEeeccccCCCCCceeeecceEEEECCCCc--EEEEeCCCC
Confidence            4577765   4567899999986 33               47899999995  444444443

>1o8x_A Tryparedoxin, TRYX, TXNI; tryparedoxin-I, synchrotron radiation, disulfide bonds tryparedoxin, thioredoxin, trypanosome; 1.3A {Crithidia fasciculata} SCOP: c.47.1.10 PDB: 1okd_A 1qk8_A 1o85_A 1o8w_A 1o7u_A 1ezk_A 1ewx_A

Probab=97.03  E-value=0.00018  Score=46.69  Aligned_cols=38  Identities=13%  Similarity=0.199  Sum_probs=30.1

Q ss_pred             ceeEEE-eChhhHHHHhCCccCceEEEEe-cCCCCCeeEEEeee
Q 034345           10 MWLITL-FQSQDVARDFGAACTPEFFLFK-KDGRRPFQLVYHGQ   51 (97)
Q Consensus        10 ~fpvL~-D~~q~va~a~gA~~TPe~fvld-~~g~~~~~l~Y~G~   51 (97)
                      .||++. |..++++++||...+|++|||| ++|    +++++..
T Consensus        88 ~~~~~~~d~~~~~~~~~~v~~~Pt~~lid~~~G----~i~~~~~  127 (146)
T 1o8x_A           88 AVPFAQSEAVQKLSKHFNVESIPTLIGVDADSG----DVVTTRA  127 (146)
T ss_dssp             ECCGGGHHHHHHHHHHTTCCSSSEEEEEETTTC----CEEESCH
T ss_pred             eeccchhhHHHHHHHHhCCCCCCEEEEEECCCC----eEEEecc
Confidence            445444 5678999999999999999999 899    5666543

>1dby_A Chloroplast thioredoxin M CH2; thioredoxin CH2, chloroplastic thioredoxin, oxidoreductase; NMR {Chlamydomonas reinhardtii} SCOP: c.47.1.1

Probab=96.97  E-value=0.001  Score=40.54  Aligned_cols=48  Identities=25%  Similarity=0.350  Sum_probs=35.3

Q ss_pred             EeChhhHHHHhCCccCceEEEEecCCCCCeeEEEeeecCCCCCCCCCCCcHHHHHHHHHHHH
Q 034345           15 LFQSQDVARDFGAACTPEFFLFKKDGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECVL   76 (97)
Q Consensus        15 ~D~~q~va~a~gA~~TPe~fvld~~g~~~~~l~Y~G~IDd~~~~~~~~~t~~~L~~Ai~alL   76 (97)
                      .|+..++++.||...+|+++++ ++|+  ..-+|.|..+           ...|++.|+++|
T Consensus        59 ~~~~~~~~~~~~v~~~Pt~~~~-~~G~--~~~~~~G~~~-----------~~~l~~~l~~~l  106 (107)
T 1dby_A           59 TDESPNVASEYGIRSIPTIMVF-KGGK--KCETIIGAVP-----------KATIVQTVEKYL  106 (107)
T ss_dssp             TTTCHHHHHHHTCCSSCEEEEE-SSSS--EEEEEESCCC-----------HHHHHHHHHHHC
T ss_pred             CCCCHHHHHHCCCCcCCEEEEE-eCCE--EEEEEeCCCC-----------HHHHHHHHHHHh
Confidence            3567789999999999998777 6774  3445667542           336888888775

>2e0q_A Thioredoxin; electron transport; 1.49A {Sulfolobus tokodaii} PDB: 3hhv_A

Probab=96.94  E-value=0.001  Score=39.76  Aligned_cols=49  Identities=24%  Similarity=0.392  Sum_probs=36.7

Q ss_pred             EeChhhHHHHhCCccCceEEEEecCCCCCeeEEEeeecCCCCCCCCCCCcHHHHHHHHHHHHc
Q 034345           15 LFQSQDVARDFGAACTPEFFLFKKDGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECVLS   77 (97)
Q Consensus        15 ~D~~q~va~a~gA~~TPe~fvld~~g~~~~~l~Y~G~IDd~~~~~~~~~t~~~L~~Ai~alLa   77 (97)
                      .|+..++++.||...+|+++++ ++|+  ..-+|.|..+           ...|.+.|+.++.
T Consensus        55 ~~~~~~~~~~~~v~~~Pt~~~~-~~g~--~~~~~~g~~~-----------~~~l~~~l~~~l~  103 (104)
T 2e0q_A           55 SDENPDIAARYGVMSLPTVIFF-KDGE--PVDEIIGAVP-----------REEIEIRIKNLLG  103 (104)
T ss_dssp             TTTCHHHHHHTTCCSSCEEEEE-ETTE--EEEEEESCCC-----------HHHHHHHHHHHHT
T ss_pred             CCCCHHHHHhCCccccCEEEEE-ECCe--EhhhccCCCC-----------HHHHHHHHHHHhc
Confidence            3667889999999999999999 7773  2345667532           3478888888764

>1v98_A Thioredoxin; oxidoreductase, structural genomics, riken structural genomics/proteomics initiative, RSGI; 1.82A {Thermus thermophilus}

Probab=96.90  E-value=0.0012  Score=42.77  Aligned_cols=51  Identities=20%  Similarity=0.346  Sum_probs=38.6

Q ss_pred             EeChhhHHHHhCCccCceEEEEecCCCCCeeEEEeeecCCCCCCCCCCCcHHHHHHHHHHHHcCC
Q 034345           15 LFQSQDVARDFGAACTPEFFLFKKDGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECVLSGQ   79 (97)
Q Consensus        15 ~D~~q~va~a~gA~~TPe~fvld~~g~~~~~l~Y~G~IDd~~~~~~~~~t~~~L~~Ai~alLaG~   79 (97)
                      .|...++++.||...+|+++++ ++|+  ..-+|.|..+           ...|.+.|+.+|+|+
T Consensus        90 ~~~~~~l~~~~~v~~~Pt~~~~-~~G~--~~~~~~G~~~-----------~~~l~~~i~~~l~~~  140 (140)
T 1v98_A           90 VDEHPGLAARYGVRSVPTLVLF-RRGA--PVATWVGASP-----------RRVLEERLRPYLEGR  140 (140)
T ss_dssp             TTTCHHHHHHTTCCSSSEEEEE-ETTE--EEEEEESCCC-----------HHHHHHHHHHHHTCC
T ss_pred             CCCCHHHHHHCCCCccCEEEEE-eCCc--EEEEEeCCCC-----------HHHHHHHHHHHHccC
Confidence            3566789999999999999999 6773  2345666532           347999999999874

>1o73_A Tryparedoxin; electron transport, trypanosomatid, thioredoxin; 2.28A {Trypanosoma brucei brucei} SCOP: c.47.1.10

Probab=96.85  E-value=0.00035  Score=44.87  Aligned_cols=32  Identities=13%  Similarity=0.372  Sum_probs=26.9

Q ss_pred             eChhhHHHHhCCccCceEEEEe-cCCCCCeeEEEeee
Q 034345           16 FQSQDVARDFGAACTPEFFLFK-KDGRRPFQLVYHGQ   51 (97)
Q Consensus        16 D~~q~va~a~gA~~TPe~fvld-~~g~~~~~l~Y~G~   51 (97)
                      |..++++++||...+|++||+| ++|    +++++..
T Consensus        95 ~~~~~~~~~~~v~~~Pt~~lid~~~G----~i~~~~~  127 (144)
T 1o73_A           95 STVSELGKTFGVESIPTLITINADTG----AIIGTQA  127 (144)
T ss_dssp             HHHHHHHHHHTCCSSSEEEEEETTTC----CEEESCH
T ss_pred             hHHHHHHHHcCCCCCCEEEEEECCCC----eEEecch
Confidence            5567899999999999999999 899    5666643

>2fwh_A Thiol:disulfide interchange protein DSBD; thioredoxin-like, C-terminal domain, reduced form at PH7, oxidoreductase; 0.99A {Escherichia coli} SCOP: c.47.1.1 PDB: 2fwe_A 2fwf_A 2fwg_A 1vrs_D 1uc7_A

Probab=96.81  E-value=0.00038  Score=45.20  Aligned_cols=35  Identities=17%  Similarity=0.339  Sum_probs=28.4

Q ss_pred             eChhhHHHHhCCccCceEEEEecCCCCCeeE---EEeeecC
Q 034345           16 FQSQDVARDFGAACTPEFFLFKKDGRRPFQL---VYHGQFD   53 (97)
Q Consensus        16 D~~q~va~a~gA~~TPe~fvld~~g~~~~~l---~Y~G~ID   53 (97)
                      |...++++.||...+|+++++|++|+   .+   +|.|.++
T Consensus        78 ~~~~~l~~~~~v~~~Pt~~~~d~~G~---~v~~~~~~G~~~  115 (134)
T 2fwh_A           78 AQDVALLKHLNVLGLPTILFFDGQGQ---EHPQARVTGFMD  115 (134)
T ss_dssp             HHHHHHHHHTTCCSSSEEEEECTTSC---BCGGGCBCSCCC
T ss_pred             chHHHHHHHcCCCCCCEEEEECCCCC---EeeeeeeeeccC
Confidence            45678999999999999999999995   32   5777643

>3tco_A Thioredoxin (TRXA-1); disulfide oxidoreductase, oxidoreductase; 1.90A {Sulfolobus solfataricus} SCOP: c.47.1.0

Probab=96.80  E-value=0.0012  Score=40.11  Aligned_cols=49  Identities=16%  Similarity=0.317  Sum_probs=36.8

Q ss_pred             EEeChhhHHHHhCCccCceEEEEecCCCCCeeEEEeeecCCCCCCCCCCCcHHHHHHHHHHHH
Q 034345           14 TLFQSQDVARDFGAACTPEFFLFKKDGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECVL   76 (97)
Q Consensus        14 L~D~~q~va~a~gA~~TPe~fvld~~g~~~~~l~Y~G~IDd~~~~~~~~~t~~~L~~Ai~alL   76 (97)
                      =.|...++++.||...+|+++++ ++|+  ..-+|.|..+           ...|...|+.++
T Consensus        60 ~~~~~~~~~~~~~i~~~Pt~~~~-~~g~--~~~~~~g~~~-----------~~~l~~~l~~~l  108 (109)
T 3tco_A           60 NVDENQKIADKYSVLNIPTTLIF-VNGQ--LVDSLVGAVD-----------EDTLESTVNKYL  108 (109)
T ss_dssp             ETTTCHHHHHHTTCCSSSEEEEE-ETTE--EEEEEESCCC-----------HHHHHHHHHHHC
T ss_pred             ccccCHHHHHhcCcccCCEEEEE-cCCc--EEEeeeccCC-----------HHHHHHHHHHHh
Confidence            35777889999999999999999 7884  3455667542           336888887765

>1nsw_A Thioredoxin, TRX; thermostability, electron transport; 1.90A {Alicyclobacillus acidocaldarius} SCOP: c.47.1.1 PDB: 1rqm_A 1quw_A 1nw2_A

Probab=96.78  E-value=0.00056  Score=41.65  Aligned_cols=48  Identities=23%  Similarity=0.355  Sum_probs=34.1

Q ss_pred             EeChhhHHHHhCCccCceEEEEecCCCCCeeEEEeeecCCCCCCCCCCCcHHHHHHHHHHHH
Q 034345           15 LFQSQDVARDFGAACTPEFFLFKKDGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECVL   76 (97)
Q Consensus        15 ~D~~q~va~a~gA~~TPe~fvld~~g~~~~~l~Y~G~IDd~~~~~~~~~t~~~L~~Ai~alL   76 (97)
                      .|+..++++.||...+|+++++ ++|+  ..-+|.|..+           ...|.+.|+.+|
T Consensus        57 ~~~~~~~~~~~~v~~~Pt~~~~-~~G~--~~~~~~G~~~-----------~~~l~~~l~~~l  104 (105)
T 1nsw_A           57 VDENPETTSQFGIMSIPTLILF-KGGR--PVKQLIGYQP-----------KEQLEAQLADVL  104 (105)
T ss_dssp             TTTCHHHHHHTTCCSSSEEEEE-ETTE--EEEEEESCCC-----------HHHHHHHTTTTT
T ss_pred             CcCCHHHHHHcCCccccEEEEE-eCCe--EEEEEecCCC-----------HHHHHHHHHHHh
Confidence            3667889999999999999999 7873  2335666532           235777666554

>3d22_A TRXH4, thioredoxin H-type; electron transport, cytoplasm, redox-active center, transport, oxidoreductase; 1.60A {Populus trichocarpa x populusdeltoides} PDB: 3d21_A

Probab=96.77  E-value=0.0016  Score=41.94  Aligned_cols=53  Identities=23%  Similarity=0.414  Sum_probs=39.8

Q ss_pred             EeChhhHHHHhCCccCceEEEEecCCCCCeeEEEeeecCCCCCCCCCCCcHHHHHHHHHHHHcCCCCC
Q 034345           15 LFQSQDVARDFGAACTPEFFLFKKDGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECVLSGQPVS   82 (97)
Q Consensus        15 ~D~~q~va~a~gA~~TPe~fvld~~g~~~~~l~Y~G~IDd~~~~~~~~~t~~~L~~Ai~alLaG~~v~   82 (97)
                      .|+..++++.||...+|+++++ ++|+  ..-++.|. +           ...|++.|+.++.+.+..
T Consensus        85 ~~~~~~~~~~~~v~~~Pt~~~~-~~G~--~~~~~~G~-~-----------~~~l~~~l~~~~~~~~~~  137 (139)
T 3d22_A           85 VDELSDFSASWEIKATPTFFFL-RDGQ--QVDKLVGA-N-----------KPELHKKITAILDSLPPS  137 (139)
T ss_dssp             TTTSHHHHHHTTCCEESEEEEE-ETTE--EEEEEESC-C-----------HHHHHHHHHHHHHTSCTT
T ss_pred             CcccHHHHHHcCCCcccEEEEE-cCCe--EEEEEeCC-C-----------HHHHHHHHHHHhccCCCC
Confidence            5677889999999999998888 7884  23345554 1           347999999999886543

>1t00_A Thioredoxin, TRX; redox regulation, multifunction macromolecule, electron transport; 1.51A {Streptomyces coelicolor}

Probab=96.77  E-value=0.0014  Score=40.35  Aligned_cols=49  Identities=14%  Similarity=0.259  Sum_probs=35.7

Q ss_pred             EeChhhHHHHhCCccCceEEEEecCCCCCeeEEEeeecCCCCCCCCCCCcHHHHHHHHHHHHc
Q 034345           15 LFQSQDVARDFGAACTPEFFLFKKDGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECVLS   77 (97)
Q Consensus        15 ~D~~q~va~a~gA~~TPe~fvld~~g~~~~~l~Y~G~IDd~~~~~~~~~t~~~L~~Ai~alLa   77 (97)
                      .|+..++++.||...+|+++++ ++|+  ..-+|.|..+           ...|.+.|+.+|+
T Consensus        63 ~~~~~~~~~~~~v~~~Pt~~~~-~~G~--~~~~~~G~~~-----------~~~l~~~l~~~l~  111 (112)
T 1t00_A           63 IDENPGTAAKYGVMSIPTLNVY-QGGE--VAKTIVGAKP-----------KAAIVRDLEDFIA  111 (112)
T ss_dssp             TTTCHHHHHHTTCCSSSEEEEE-ETTE--EEEEEESCCC-----------HHHHHHHTHHHHC
T ss_pred             cCCCHHHHHhCCCCcccEEEEE-eCCE--EEEEEeCCCC-----------HHHHHHHHHHHhh
Confidence            4667889999999999997777 6773  2344666532           3468888888775

>1x5d_A Protein disulfide-isomerase A6; PDIA6, ERP5, TXNDC7, thioredoxin like domain, redox, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=96.72  E-value=0.0015  Score=41.26  Aligned_cols=50  Identities=24%  Similarity=0.287  Sum_probs=38.3

Q ss_pred             eChhhHHHHhCCccCceEEEEecCCCCCeeEEEeeecCCCCCCCCCCCcHHHHHHHHHHHHcCC
Q 034345           16 FQSQDVARDFGAACTPEFFLFKKDGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECVLSGQ   79 (97)
Q Consensus        16 D~~q~va~a~gA~~TPe~fvld~~g~~~~~l~Y~G~IDd~~~~~~~~~t~~~L~~Ai~alLaG~   79 (97)
                      |...++++.|+...+|+++++++ |+  ...+|.|..+           ...|.+.|+.++...
T Consensus        70 ~~~~~l~~~~~v~~~Pt~~~~~~-g~--~~~~~~G~~~-----------~~~l~~~l~~~~~~~  119 (133)
T 1x5d_A           70 TVNQVLASRYGIRGFPTIKIFQK-GE--SPVDYDGGRT-----------RSDIVSRALDLFSDN  119 (133)
T ss_dssp             TTCCHHHHHHTCCSSSEEEEEET-TE--EEEEECSCCS-----------HHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHhCCCCeeCeEEEEeC-CC--ceEEecCCCC-----------HHHHHHHHHHHhhcc
Confidence            56678999999999999999998 53  3567777543           346888888887654

>3s9f_A Tryparedoxin; thioredoxin fold, disulfide reductase, electron transport; 1.80A {Leishmania major}

Probab=96.71  E-value=0.00049  Score=46.32  Aligned_cols=29  Identities=14%  Similarity=0.363  Sum_probs=26.0

Q ss_pred             hhHHHHhCCccCceEEEEecC-CCCCeeEEEeee
Q 034345           19 QDVARDFGAACTPEFFLFKKD-GRRPFQLVYHGQ   51 (97)
Q Consensus        19 q~va~a~gA~~TPe~fvld~~-g~~~~~l~Y~G~   51 (97)
                      +++++.||...+|++||||++ |    +++++..
T Consensus       118 ~~l~~~~~v~~~Pt~~lid~~~G----~iv~~~~  147 (165)
T 3s9f_A          118 EALTKKYSVESIPTLIGLNADTG----DTVTTRA  147 (165)
T ss_dssp             HHHHHHTTCCSSSEEEEEETTTC----CEEESCH
T ss_pred             HHHHHHcCCCCCCEEEEEeCCCC----EEEeccc
Confidence            899999999999999999998 8    6777754

>2i4a_A Thioredoxin; acidophIle, disulfide exchange, oxidoreductase; 1.00A {Acetobacter aceti}

Probab=96.70  E-value=0.0013  Score=39.90  Aligned_cols=47  Identities=13%  Similarity=0.294  Sum_probs=33.9

Q ss_pred             EeChhhHHHHhCCccCceEEEEecCCCCCeeEEEeeecCCCCCCCCCCCcHHHHHHHHHHH
Q 034345           15 LFQSQDVARDFGAACTPEFFLFKKDGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECV   75 (97)
Q Consensus        15 ~D~~q~va~a~gA~~TPe~fvld~~g~~~~~l~Y~G~IDd~~~~~~~~~t~~~L~~Ai~al   75 (97)
                      .|...++++.||...+|+++++ ++|+  ..-+|.|..+           ...|.+.|+++
T Consensus        60 ~~~~~~~~~~~~v~~~Pt~~~~-~~G~--~~~~~~G~~~-----------~~~l~~~l~~~  106 (107)
T 2i4a_A           60 IDDNPETPNAYQVRSIPTLMLV-RDGK--VIDKKVGALP-----------KSQLKAWVESA  106 (107)
T ss_dssp             TTTCCHHHHHTTCCSSSEEEEE-ETTE--EEEEEESCCC-----------HHHHHHHHHHT
T ss_pred             CCCCHHHHHhcCCCccCEEEEE-eCCE--EEEEecCCCC-----------HHHHHHHHHhc
Confidence            3667789999999999999999 7884  2334666532           33677777654

>1w4v_A Thioredoxin, mitochondrial; antioxidant enzyme, mitochondrion, electron TRA oxidoreductase; 1.80A {Homo sapiens} PDB: 1uvz_A 1w89_A

Probab=96.67  E-value=0.0022  Score=40.49  Aligned_cols=48  Identities=15%  Similarity=0.302  Sum_probs=35.4

Q ss_pred             EeChhhHHHHhCCccCceEEEEecCCCCCeeEEEeeecCCCCCCCCCCCcHHHHHHHHHHHH
Q 034345           15 LFQSQDVARDFGAACTPEFFLFKKDGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECVL   76 (97)
Q Consensus        15 ~D~~q~va~a~gA~~TPe~fvld~~g~~~~~l~Y~G~IDd~~~~~~~~~t~~~L~~Ai~alL   76 (97)
                      .|...++++.||...+|+++++ ++|+  ..-+|.|..+           ...|.+.|+.++
T Consensus        71 ~d~~~~l~~~~~v~~~Pt~~~~-~~G~--~~~~~~G~~~-----------~~~l~~~l~~~l  118 (119)
T 1w4v_A           71 IDDHTDLAIEYEVSAVPTVLAM-KNGD--VVDKFVGIKD-----------EDQLEAFLKKLI  118 (119)
T ss_dssp             TTTTHHHHHHTTCCSSSEEEEE-ETTE--EEEEEESCCC-----------HHHHHHHHHHHH
T ss_pred             CCCCHHHHHHcCCCcccEEEEE-eCCc--EEEEEcCCCC-----------HHHHHHHHHHHh
Confidence            4667789999999999999999 7883  2335666532           336888887765

>2es7_A Q8ZP25_salty, putative thiol-disulfide isomerase and thioredoxi; structural genomics, PSI, protein structure initiative; 2.80A {Salmonella typhimurium} SCOP: c.47.1.20 PDB: 2gzp_A 2jzt_A

Probab=96.64  E-value=0.001  Score=44.70  Aligned_cols=54  Identities=17%  Similarity=0.297  Sum_probs=37.7

Q ss_pred             EEEeChhhHHHHhCCccCceEEEEecCCCCCeeEEEeeecCCCCCCCCCCCcHHHHHHHHHHHHcCCC
Q 034345           13 ITLFQSQDVARDFGAACTPEFFLFKKDGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECVLSGQP   80 (97)
Q Consensus        13 vL~D~~q~va~a~gA~~TPe~fvld~~g~~~~~l~Y~G~IDd~~~~~~~~~t~~~L~~Ai~alLaG~~   80 (97)
                      |=.|+..++++.||...+|+++++ ++|+  ..-+|.|..+           ...|++.|+.+++...
T Consensus        75 Vd~d~~~~la~~~~V~~iPT~~~f-k~G~--~v~~~~G~~~-----------~~~l~~~i~~~l~~~~  128 (142)
T 2es7_A           75 ADLEQSEAIGDRFNVRRFPATLVF-TDGK--LRGALSGIHP-----------WAELLTLMRSIVDTPA  128 (142)
T ss_dssp             ECHHHHHHHHHTTTCCSSSEEEEE-SCC------CEESCCC-----------HHHHHHHHHHHHC---
T ss_pred             EECCCCHHHHHhcCCCcCCeEEEE-eCCE--EEEEEeCCCC-----------HHHHHHHHHHHhcccc
Confidence            335677899999999999999999 7885  3445777543           3368899998886543

>4f82_A Thioredoxin reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.85A {Burkholderia cenocepacia}

Probab=96.61  E-value=0.0024  Score=45.18  Aligned_cols=39  Identities=8%  Similarity=-0.020  Sum_probs=32.6

Q ss_pred             hcc--eeEEEeChhhHHHHhCCc-----------cCceEEEEecCCCCCeeEEEeee
Q 034345            8 FLM--WLITLFQSQDVARDFGAA-----------CTPEFFLFKKDGRRPFQLVYHGQ   51 (97)
Q Consensus         8 ~~~--fpvL~D~~q~va~a~gA~-----------~TPe~fvld~~g~~~~~l~Y~G~   51 (97)
                      .++  ||+|.|.+++++++||..           ..+.+||| ++|    +++|.-.
T Consensus       105 ~l~~~f~lLsD~~~~va~ayGv~~~~~~~G~g~~s~R~tfII-~dG----~I~~~~~  156 (176)
T 4f82_A          105 HTAGKVRMMADGSAAFTHALGLTQDLSARGMGIRSLRYAMVI-DGG----VVKTLAV  156 (176)
T ss_dssp             TCTTTSEEEECTTCHHHHHHTCEEECGGGTCCEEECCEEEEE-ETT----EEEEEEE
T ss_pred             CCCCCceEEEcCchHHHHHhCCCccccccCCCcccccEEEEE-cCC----EEEEEEE
Confidence            355  999999999999999974           25899999 999    7877754

>1xiy_A Peroxiredoxin, pfaop; alpha-aneurysm, thioredoxin fold, peroxiredoxin fold, oxidoreductase; 1.80A {Plasmodium falciparum} SCOP: c.47.1.10

Probab=96.60  E-value=0.0084  Score=42.18  Aligned_cols=63  Identities=10%  Similarity=-0.093  Sum_probs=40.9

Q ss_pred             ceeEEEeChhhHHHHhCCc-----------cCceEEEEecCCCCCeeEEEeeecCCCCC-CCCCCCcHHHHHHHHHHHHc
Q 034345           10 MWLITLFQSQDVARDFGAA-----------CTPEFFLFKKDGRRPFQLVYHGQFDDSRP-SNNLPVTGRDIRLAIECVLS   77 (97)
Q Consensus        10 ~fpvL~D~~q~va~a~gA~-----------~TPe~fvld~~g~~~~~l~Y~G~IDd~~~-~~~~~~t~~~L~~Ai~alLa   77 (97)
                      +||+|-|.+++++++||..           ....+|||| +|    +++|.-.-.+... ....+++....++.++.|-+
T Consensus       105 ~f~lLsD~~~~~a~~yGv~~~~~~~G~g~~~~R~tfvId-dG----~V~~~~v~~~~~~~~~~~~~~~~~~~~vL~~L~~  179 (182)
T 1xiy_A          105 KIKYISDGNSSFTDSMNMLVDKSNFFMGMRPWRFVAIVE-NN----ILVKMFQEKDKQHNIQTDPYDISTVNNVKEFLKN  179 (182)
T ss_dssp             SSEEEECTTSHHHHHTTCEEECGGGTCCEEECCEEEEEE-TT----EEEEEEECSSCCTTCSSCCCSTTSHHHHHHHHHC
T ss_pred             CceEEEeCchHHHHHhCCceeccccCCCCceEEEEEEEc-CC----EEEEEEEeCCcccccccCcccCCCHHHHHHHHHh
Confidence            6999999999999999964           245789998 88    7888754222210 00112233356666666654

>2lst_A Thioredoxin; structural genomics, NEW YORK structural genomics research consortium, oxidoreductase; NMR {Thermus thermophilus}

Probab=95.63  E-value=0.00033  Score=44.63  Aligned_cols=56  Identities=16%  Similarity=0.230  Sum_probs=39.7

Q ss_pred             eChhhHHHHhCCccCceEEEEecC-CCCCe--eEEEeeecCCCCCCCCCCCcHHHHHHHHHHHHcCCCCCCC
Q 034345           16 FQSQDVARDFGAACTPEFFLFKKD-GRRPF--QLVYHGQFDDSRPSNNLPVTGRDIRLAIECVLSGQPVSSN   84 (97)
Q Consensus        16 D~~q~va~a~gA~~TPe~fvld~~-g~~~~--~l~Y~G~IDd~~~~~~~~~t~~~L~~Ai~alLaG~~v~~~   84 (97)
                      |+..++++.||...+|+++++|++ |+  +  ..++.|..+..           .|...|+.++++..-...
T Consensus        65 ~~~~~~~~~~~v~~~Pt~~~~d~~~G~--~~~~~~~~G~~~~~-----------~l~~~l~~~~~~~~~~~~  123 (130)
T 2lst_A           65 PEGQELARRYRVPGTPTFVFLVPKAGA--WEEVGRLFGSRPRA-----------EFLKELRQVCVKGGACGE  123 (130)
Confidence            355789999999999999999964 63  2  23677765433           577778777776554443

>2r37_A Glutathione peroxidase 3; plasma, structural genomics consort oxidoreductase, secreted, selenium, selenocysteine; 1.85A {Homo sapiens}

Probab=96.59  E-value=0.0012  Score=46.92  Aligned_cols=36  Identities=19%  Similarity=0.253  Sum_probs=25.4

Q ss_pred             CceEEEEecCCCCCeeEEEeeecCCCCCCCCCCCcHHHHHHHHHHHHcC
Q 034345           30 TPEFFLFKKDGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECVLSG   78 (97)
Q Consensus        30 TPe~fvld~~g~~~~~l~Y~G~IDd~~~~~~~~~t~~~L~~Ai~alLaG   78 (97)
                      .|+.||||++|+  ++.+|.|.++           ...|+..|+++|+.
T Consensus       159 ~~ttflID~~G~--i~~~~~g~~~-----------~~~l~~~I~~ll~~  194 (207)
T 2r37_A          159 NFEKFLVGPDGI--PIMRWHHRTT-----------VSNVKMDILSYMRR  194 (207)
T ss_dssp             TTCEEEECTTSC--EEEEECTTSC-----------HHHHHHHHHHHHHH
T ss_pred             cceEEEECCCCc--EEEEECCCCC-----------HHHHHHHHHHHHhh
Confidence            389999999995  4445555432           24788889988864

>2dj1_A Protein disulfide-isomerase A4; protein ERP-72, ERP72, CAI, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=96.59  E-value=0.0032  Score=40.26  Aligned_cols=51  Identities=18%  Similarity=0.239  Sum_probs=38.4

Q ss_pred             eChhhHHHHhCCccCceEEEEecCCCCCeeEEEeeecCCCCCCCCCCCcHHHHHHHHHHHHcCCCC
Q 034345           16 FQSQDVARDFGAACTPEFFLFKKDGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECVLSGQPV   81 (97)
Q Consensus        16 D~~q~va~a~gA~~TPe~fvld~~g~~~~~l~Y~G~IDd~~~~~~~~~t~~~L~~Ai~alLaG~~v   81 (97)
                      |...++++.||...+|+++++ ++|+   ..+|.|..+           ...|.+.|+.++.....
T Consensus        78 ~~~~~~~~~~~v~~~Pt~~~~-~~G~---~~~~~g~~~-----------~~~l~~~l~~~~~~~~~  128 (140)
T 2dj1_A           78 TSASMLASKFDVSGYPTIKIL-KKGQ---AVDYDGSRT-----------QEEIVAKVREVSQPDWT  128 (140)
T ss_dssp             TTCHHHHHHTTCCSSSEEEEE-ETTE---EEECCSCCC-----------HHHHHHHHHHHHSSSCC
T ss_pred             cccHHHHHHCCCCccCeEEEE-ECCc---EEEcCCCCC-----------HHHHHHHHHHhcCCCCC
Confidence            455689999999999999999 6773   566777532           44788999888865443

>1ep7_A Thioredoxin CH1, H-type; electron transport; 2.10A {Chlamydomonas reinhardtii} SCOP: c.47.1.1 PDB: 1tof_A 1ep8_A

Probab=96.59  E-value=0.0031  Score=38.65  Aligned_cols=48  Identities=19%  Similarity=0.240  Sum_probs=34.8

Q ss_pred             EeChhhHHHHhCCccCceEEEEecCCCCCeeEEEeeecCCCCCCCCCCCcHHHHHHHHHHHHc
Q 034345           15 LFQSQDVARDFGAACTPEFFLFKKDGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECVLS   77 (97)
Q Consensus        15 ~D~~q~va~a~gA~~TPe~fvld~~g~~~~~l~Y~G~IDd~~~~~~~~~t~~~L~~Ai~alLa   77 (97)
                      .|+..++++.||...+|+++++ ++|+  ..-+|.|. +           ...|++.|+.+++
T Consensus        64 ~~~~~~~~~~~~v~~~Pt~~~~-~~G~--~~~~~~G~-~-----------~~~l~~~l~~~l~  111 (112)
T 1ep7_A           64 VDAVAAVAEAAGITAMPTFHVY-KDGV--KADDLVGA-S-----------QDKLKALVAKHAA  111 (112)
T ss_dssp             TTTTHHHHHHHTCCBSSEEEEE-ETTE--EEEEEESC-C-----------HHHHHHHHHHHHC
T ss_pred             CCchHHHHHHcCCCcccEEEEE-ECCe--EEEEEcCC-C-----------HHHHHHHHHHHhc
Confidence            3567789999999999996665 7774  23456664 2           3368888988875

>2o8v_B Thioredoxin 1; disulfide crosslinked complex, oxidoreductase; 3.00A {Escherichia coli}

Probab=96.58  E-value=0.0014  Score=42.45  Aligned_cols=49  Identities=20%  Similarity=0.396  Sum_probs=36.8

Q ss_pred             EeChhhHHHHhCCccCceEEEEecCCCCCeeEEEeeecCCCCCCCCCCCcHHHHHHHHHHHHc
Q 034345           15 LFQSQDVARDFGAACTPEFFLFKKDGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECVLS   77 (97)
Q Consensus        15 ~D~~q~va~a~gA~~TPe~fvld~~g~~~~~l~Y~G~IDd~~~~~~~~~t~~~L~~Ai~alLa   77 (97)
                      .|+..++++.||...+|+++++ ++|+  ..-+|.|..+           ...|.+.|+++|+
T Consensus        80 ~~~~~~l~~~~~v~~~Pt~~~~-~~G~--~~~~~~G~~~-----------~~~l~~~l~~~l~  128 (128)
T 2o8v_B           80 IDQNPGTAPKYGIRGIPTLLLF-KNGE--VAATKVGALS-----------KGQLKEFLDANLA  128 (128)
T ss_dssp             TTTCCTTSGGGTCCSSSEEEEE-ETTE--EEEEEESCCC-----------HHHHHHHHHHHHC
T ss_pred             CCCCHHHHHHcCCCccCEEEEE-eCCE--EEEEEcCCCC-----------HHHHHHHHHHhhC
Confidence            4667889999999999999999 7884  2345666532           3478888888764

>2i3y_A Epididymal secretory glutathione peroxidase; thioredoxin fold, epididymal androgen related protein, struc genomics, structural genomics consortium; 2.00A {Homo sapiens}

Probab=96.58  E-value=0.0013  Score=47.21  Aligned_cols=36  Identities=19%  Similarity=0.163  Sum_probs=25.9

Q ss_pred             CceEEEEecCCCCCeeEEEeeecCCCCCCCCCCCcHHHHHHHHHHHHcC
Q 034345           30 TPEFFLFKKDGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECVLSG   78 (97)
Q Consensus        30 TPe~fvld~~g~~~~~l~Y~G~IDd~~~~~~~~~t~~~L~~Ai~alLaG   78 (97)
                      .|+.||||++|+  ++-+|.|.++           ...|+.+|+++|+.
T Consensus       177 npttfLID~~G~--vv~~~~g~~~-----------~~~l~~~I~~ll~~  212 (215)
T 2i3y_A          177 NFEKFLVGPDGI--PVMRWSHRAT-----------VSSVKTDILAYLKQ  212 (215)
T ss_dssp             TTCEEEECTTSC--EEEEECTTSC-----------HHHHHHHHHHHGGG
T ss_pred             CceEEEECCCCe--EEEEeCCCCC-----------HHHHHHHHHHHHHH
Confidence            389999999995  4445555432           24799999999863

>2dml_A Protein disulfide-isomerase A6; thioredoxin domain-containing protein 7, endoplasmic reticulum, redox-active center, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=96.57  E-value=0.0019  Score=40.90  Aligned_cols=51  Identities=20%  Similarity=0.220  Sum_probs=37.7

Q ss_pred             EeChhhHHHHhCCccCceEEEEecCCCCCeeEEEeeecCCCCCCCCCCCcHHHHHHHHHHHHcC
Q 034345           15 LFQSQDVARDFGAACTPEFFLFKKDGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECVLSG   78 (97)
Q Consensus        15 ~D~~q~va~a~gA~~TPe~fvld~~g~~~~~l~Y~G~IDd~~~~~~~~~t~~~L~~Ai~alLaG   78 (97)
                      .|...++++.|+...+|+++++++++.  ...+|.|..+           ...|.+.|...+..
T Consensus        75 ~~~~~~l~~~~~v~~~Pt~~~~~~~~~--~~~~~~G~~~-----------~~~l~~~l~~~l~~  125 (130)
T 2dml_A           75 ADKHQSLGGQYGVQGFPTIKIFGANKN--KPEDYQGGRT-----------GEAIVDAALSALRS  125 (130)
T ss_dssp             TTTCHHHHHHHTCCSSSEEEEESSCTT--SCEECCSCCS-----------HHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHcCCCccCEEEEEeCCCC--eEEEeecCCC-----------HHHHHHHHHHHHhc
Confidence            456778999999999999999999884  2567777532           23566666666543

>1ti3_A Thioredoxin H, PTTRXH1; oxidoreductase; NMR {Populus tremula} SCOP: c.47.1.1

Probab=96.55  E-value=0.0045  Score=37.82  Aligned_cols=48  Identities=19%  Similarity=0.326  Sum_probs=34.5

Q ss_pred             EeChhhHHHHhCCccCceEEEEecCCCCCeeEEEeeecCCCCCCCCCCCcHHHHHHHHHHHHc
Q 034345           15 LFQSQDVARDFGAACTPEFFLFKKDGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECVLS   77 (97)
Q Consensus        15 ~D~~q~va~a~gA~~TPe~fvld~~g~~~~~l~Y~G~IDd~~~~~~~~~t~~~L~~Ai~alLa   77 (97)
                      .|...++++.||...+|+++++ ++|+  ..-++.| .+..           .|.+.|++++.
T Consensus        65 ~~~~~~~~~~~~v~~~Pt~~~~-~~G~--~~~~~~g-~~~~-----------~l~~~l~~~~~  112 (113)
T 1ti3_A           65 VDELKAVAEEWNVEAMPTFIFL-KDGK--LVDKTVG-ADKD-----------GLPTLVAKHAT  112 (113)
T ss_dssp             TTTCHHHHHHHHCSSTTEEEEE-ETTE--EEEEEEC-CCTT-----------HHHHHHHHHHH
T ss_pred             ccccHHHHHhCCCCcccEEEEE-eCCE--EEEEEec-CCHH-----------HHHHHHHHhhc
Confidence            3666789999999999999888 5773  2334556 3222           68888888774

>1nho_A Probable thioredoxin; beta sheet, alpha helix, oxidoreductase; NMR {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.47.1.1

Probab=96.52  E-value=0.0021  Score=37.51  Aligned_cols=44  Identities=16%  Similarity=0.344  Sum_probs=33.5

Q ss_pred             EeChhhHHHHhCCccCceEEEEecCCCCCeeEEEeeecCCCCCCCCCCCcHHHHHHHHHHHH
Q 034345           15 LFQSQDVARDFGAACTPEFFLFKKDGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECVL   76 (97)
Q Consensus        15 ~D~~q~va~a~gA~~TPe~fvld~~g~~~~~l~Y~G~IDd~~~~~~~~~t~~~L~~Ai~alL   76 (97)
                      .|++.++++.||...+|++++   +|+    +++.|..+..           .|++.|+.++
T Consensus        41 ~~~~~~~~~~~~v~~~Pt~~~---~G~----~~~~G~~~~~-----------~l~~~l~~~l   84 (85)
T 1nho_A           41 IMVDREKAIEYGLMAVPAIAI---NGV----VRFVGAPSRE-----------ELFEAINDEM   84 (85)
T ss_dssp             TTTCGGGGGGTCSSCSSEEEE---TTT----EEEECSSCCH-----------HHHHHHHHHC
T ss_pred             CCCCHHHHHhCCceeeCEEEE---CCE----EEEccCCCHH-----------HHHHHHHHHh
Confidence            356778999999999999998   773    4888864332           6777777765

>2yzu_A Thioredoxin; redox protein, electron transport, structural genomics; 1.90A {Thermus thermophilus} PDB: 2cvk_A

Probab=96.50  E-value=0.0017  Score=39.28  Aligned_cols=49  Identities=27%  Similarity=0.327  Sum_probs=35.4

Q ss_pred             EeChhhHHHHhCCccCceEEEEecCCCCCeeEEEeeecCCCCCCCCCCCcHHHHHHHHHHHHc
Q 034345           15 LFQSQDVARDFGAACTPEFFLFKKDGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECVLS   77 (97)
Q Consensus        15 ~D~~q~va~a~gA~~TPe~fvld~~g~~~~~l~Y~G~IDd~~~~~~~~~t~~~L~~Ai~alLa   77 (97)
                      .|...++++.||...+|+++++ ++|+  ..-+|.|..+           ...|.+.|+.++.
T Consensus        58 ~~~~~~~~~~~~v~~~Pt~~~~-~~g~--~~~~~~g~~~-----------~~~l~~~l~~~l~  106 (109)
T 2yzu_A           58 VDENPKTAMRYRVMSIPTVILF-KDGQ--PVEVLVGAQP-----------KRNYQAKIEKHLP  106 (109)
T ss_dssp             TTTCHHHHHHTTCCSSSEEEEE-ETTE--EEEEEESCCC-----------HHHHHHHHHTTC-
T ss_pred             CCCCHhHHHhCCCCcCCEEEEE-eCCc--EeeeEeCCCC-----------HHHHHHHHHHHhh
Confidence            4667789999999999999999 7774  2335666532           3468888877664

>1fb6_A Thioredoxin M; electron transport; 2.10A {Spinacia oleracea} SCOP: c.47.1.1 PDB: 1fb0_A 1gl8_A 2puk_C

Probab=96.42  E-value=0.0038  Score=37.61  Aligned_cols=48  Identities=19%  Similarity=0.288  Sum_probs=34.2

Q ss_pred             EeChhhHHHHhCCccCceEEEEecCCCCCeeEEEeeecCCCCCCCCCCCcHHHHHHHHHHHH
Q 034345           15 LFQSQDVARDFGAACTPEFFLFKKDGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECVL   76 (97)
Q Consensus        15 ~D~~q~va~a~gA~~TPe~fvld~~g~~~~~l~Y~G~IDd~~~~~~~~~t~~~L~~Ai~alL   76 (97)
                      .|+..++++.||...+|+++++ ++|+  ..-++.|..+           ...+.+.|+++|
T Consensus        58 ~~~~~~~~~~~~v~~~Pt~~~~-~~g~--~~~~~~G~~~-----------~~~l~~~l~~~l  105 (105)
T 1fb6_A           58 TDEAPGIATQYNIRSIPTVLFF-KNGE--RKESIIGAVP-----------KSTLTDSIEKYL  105 (105)
T ss_dssp             TTTCHHHHHHTTCCSSSEEEEE-ETTE--EEEEEEECCC-----------HHHHHHHHHHHC
T ss_pred             CcchHHHHHhCCCCcccEEEEE-eCCe--EEEEEecCCC-----------HHHHHHHHHhhC
Confidence            4667789999999999997777 5774  3445667543           336777777654

>2vlu_A Thioredoxin, thioredoxin H isoform 2.; oxidoreductase, thioredoxin-fold, protein disulfide reductase; 1.70A {Hordeum vulgare var} PDB: 2vlt_A 2vlv_A 2iwt_A*

Probab=96.37  E-value=0.0046  Score=38.63  Aligned_cols=49  Identities=14%  Similarity=0.316  Sum_probs=35.9

Q ss_pred             EeChhhHHHHhCCccCceEEEEecCCCCCeeEEEeeecCCCCCCCCCCCcHHHHHHHHHHHHcC
Q 034345           15 LFQSQDVARDFGAACTPEFFLFKKDGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECVLSG   78 (97)
Q Consensus        15 ~D~~q~va~a~gA~~TPe~fvld~~g~~~~~l~Y~G~IDd~~~~~~~~~t~~~L~~Ai~alLaG   78 (97)
                      .|+..++++.||...+|+++++ ++|+  ..-+|.|..            ...|.+.|+.++..
T Consensus        73 ~~~~~~~~~~~~v~~~Pt~~~~-~~G~--~~~~~~G~~------------~~~l~~~l~~~l~~  121 (122)
T 2vlu_A           73 VDELKPIAEQFSVEAMPTFLFM-KEGD--VKDRVVGAI------------KEELTAKVGLHAAA  121 (122)
T ss_dssp             TTTCHHHHHHTTCCSSSEEEEE-ETTE--EEEEEESSC------------HHHHHHHHHHHHSC
T ss_pred             CCCCHHHHHHcCCCcccEEEEE-eCCE--EEEEEeCcC------------HHHHHHHHHHHhcc
Confidence            3667789999999999997666 7774  233566643            23788889888765

>3p2a_A Thioredoxin 2, putative thioredoxin-like protein; structural genomics, center for structural genomics of infec diseases, csgid; 2.19A {Yersinia pestis}

Probab=96.36  E-value=0.0037  Score=40.71  Aligned_cols=54  Identities=15%  Similarity=0.301  Sum_probs=39.7

Q ss_pred             EEEeChhhHHHHhCCccCceEEEEecCCCCCeeEEEeeecCCCCCCCCCCCcHHHHHHHHHHHHcCCC
Q 034345           13 ITLFQSQDVARDFGAACTPEFFLFKKDGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECVLSGQP   80 (97)
Q Consensus        13 vL~D~~q~va~a~gA~~TPe~fvld~~g~~~~~l~Y~G~IDd~~~~~~~~~t~~~L~~Ai~alLaG~~   80 (97)
                      +=.|+..++++.||...+|+++++ ++|+  ..-+|.|..+           ...|.+.|+.++...+
T Consensus        93 vd~~~~~~l~~~~~v~~~Pt~~~~-~~G~--~~~~~~G~~~-----------~~~l~~~l~~~l~~~~  146 (148)
T 3p2a_A           93 VNTEAEPALSTRFRIRSIPTIMLY-RNGK--MIDMLNGAVP-----------KAPFDNWLDEQLSRDP  146 (148)
T ss_dssp             EETTTCHHHHHHTTCCSSSEEEEE-ETTE--EEEEESSCCC-----------HHHHHHHHHHHHHSCC
T ss_pred             EECcCCHHHHHHCCCCccCEEEEE-ECCe--EEEEEeCCCC-----------HHHHHHHHHHHhcccC
Confidence            335778899999999999999888 4773  3445666532           4478888988887643

>3die_A Thioredoxin, TRX; electron transport, SWAP domain, redox enzymology, oxidoreductase, redox-active center, transport; 1.85A {Staphylococcus aureus} SCOP: c.47.1.1 PDB: 2o7k_A 2o85_A 2o89_A 2o87_A

Probab=96.35  E-value=0.0025  Score=38.46  Aligned_cols=49  Identities=14%  Similarity=0.220  Sum_probs=34.5

Q ss_pred             EEEeChhhHHHHhCCccCceEEEEecCCCCCeeEEEeeecCCCCCCCCCCCcHHHHHHHHHHH
Q 034345           13 ITLFQSQDVARDFGAACTPEFFLFKKDGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECV   75 (97)
Q Consensus        13 vL~D~~q~va~a~gA~~TPe~fvld~~g~~~~~l~Y~G~IDd~~~~~~~~~t~~~L~~Ai~al   75 (97)
                      +=.|...++++.||...+|++++++ +|+  ..-+|.|..+           ...|.+.|+.+
T Consensus        57 v~~~~~~~~~~~~~v~~~Pt~~~~~-~G~--~~~~~~g~~~-----------~~~l~~~l~~~  105 (106)
T 3die_A           57 LDVDENPSTAAKYEVMSIPTLIVFK-DGQ--PVDKVVGFQP-----------KENLAEVLDKH  105 (106)
T ss_dssp             EETTTCHHHHHHTTCCSBSEEEEEE-TTE--EEEEEESCCC-----------HHHHHHHHHTT
T ss_pred             EECCcCHHHHHhCCCcccCEEEEEe-CCe--EEEEEeCCCC-----------HHHHHHHHHHh
Confidence            3347788899999999999999996 773  3446667532           33677666554

>2pu9_C TRX-F, thioredoxin F-type, chloroplast; protein-protein complex, iron-sulfur, electron transport; 1.65A {Spinacia oleracea} PDB: 2pvo_C 1f9m_A

Probab=96.32  E-value=0.007  Score=37.23  Aligned_cols=45  Identities=18%  Similarity=0.273  Sum_probs=33.1

Q ss_pred             ChhhHHHHhCCccCceEEEEecCCCCCeeEEEeeecCCCCCCCCCCCcHHHHHHHHHHHH
Q 034345           17 QSQDVARDFGAACTPEFFLFKKDGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECVL   76 (97)
Q Consensus        17 ~~q~va~a~gA~~TPe~fvld~~g~~~~~l~Y~G~IDd~~~~~~~~~t~~~L~~Ai~alL   76 (97)
                      +..++++.||...+|+ |+++++|+  ..-++.|. +           ...|...|+.++
T Consensus        66 ~~~~~~~~~~v~~~Pt-~~~~~~G~--~~~~~~G~-~-----------~~~l~~~l~~~~  110 (111)
T 2pu9_C           66 ENKTLAKELGIRVVPT-FKILKENS--VVGEVTGA-K-----------YDKLLEAIQAAR  110 (111)
T ss_dssp             TTHHHHHHHCCSBSSE-EEEESSSS--EEEEEESS-C-----------HHHHHHHHHHHH
T ss_pred             chHHHHHHcCCCeeeE-EEEEeCCc--EEEEEcCC-C-----------HHHHHHHHHHhh
Confidence            5679999999999999 67778885  33456664 1           236888887775

>3qfa_C Thioredoxin; protein-protein complex, rossmann fold, HO pyridine nucleotide disulfide oxidoreductase, electron TRAN oxidoreductase; HET: FAD; 2.20A {Homo sapiens} PDB: 3qfb_C*

Probab=96.29  E-value=0.0051  Score=38.75  Aligned_cols=49  Identities=22%  Similarity=0.394  Sum_probs=36.0

Q ss_pred             EEEeChhhHHHHhCCccCceEEEEecCCCCCeeEEEeeecCCCCCCCCCCCcHHHHHHHHHHHH
Q 034345           13 ITLFQSQDVARDFGAACTPEFFLFKKDGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECVL   76 (97)
Q Consensus        13 vL~D~~q~va~a~gA~~TPe~fvld~~g~~~~~l~Y~G~IDd~~~~~~~~~t~~~L~~Ai~alL   76 (97)
                      +=.|+..++++.||...+|+++++ ++|+  ..-+|.|. +           ...|++.|+.+|
T Consensus        68 vd~d~~~~l~~~~~v~~~Pt~~~~-~~G~--~~~~~~G~-~-----------~~~l~~~l~~~l  116 (116)
T 3qfa_C           68 VDVDDCQDVASECEVKSMPTFQFF-KKGQ--KVGEFSGA-N-----------KEKLEATINELV  116 (116)
T ss_dssp             EETTTTHHHHHHTTCCSSSEEEEE-SSSS--EEEEEESC-C-----------HHHHHHHHHHHC
T ss_pred             EECCCCHHHHHHcCCccccEEEEE-eCCe--EEEEEcCC-C-----------HHHHHHHHHHhC
Confidence            334778899999999999998888 6775  35567775 2           236777777654

>2ppt_A Thioredoxin-2; thiredoxin, zinc finger, oxidoreductase; 1.92A {Rhodobacter capsulatus}

Probab=96.26  E-value=0.0049  Score=41.25  Aligned_cols=51  Identities=20%  Similarity=0.186  Sum_probs=37.0

Q ss_pred             EeChhhHHHHhCCccCceEEEEecCCCCCeeEEEeeecCCCCCCCCCCCcHHHHHHHHHHHHcCC
Q 034345           15 LFQSQDVARDFGAACTPEFFLFKKDGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECVLSGQ   79 (97)
Q Consensus        15 ~D~~q~va~a~gA~~TPe~fvld~~g~~~~~l~Y~G~IDd~~~~~~~~~t~~~L~~Ai~alLaG~   79 (97)
                      .|+.+++++.||...+|+++++ ++|+  ..-+|.|..+           ...|.+.|+.++..+
T Consensus       104 ~~~~~~l~~~~~i~~~Pt~~~~-~~G~--~~~~~~G~~~-----------~~~l~~~l~~~l~~~  154 (155)
T 2ppt_A          104 TQAHPAVAGRHRIQGIPAFILF-HKGR--ELARAAGARP-----------ASELVGFVRGKLGAR  154 (155)
T ss_dssp             TTTSTHHHHHTTCCSSSEEEEE-ETTE--EEEEEESCCC-----------HHHHHHHHHHHHC--
T ss_pred             CCccHHHHHHcCCCcCCEEEEE-eCCe--EEEEecCCCC-----------HHHHHHHHHHHhccC
Confidence            4667789999999999999999 6774  2345777542           347888888887653

>2voc_A Thioredoxin; electron transport, homodimer, disulfide, transport, redox-active center; 1.50A {Bacillus subtilis} PDB: 2ipa_A 2gzy_A 2gzz_A

Probab=96.25  E-value=0.0036  Score=38.92  Aligned_cols=49  Identities=18%  Similarity=0.276  Sum_probs=34.9

Q ss_pred             EeChhhHHHHhCCccCceEEEEecCCCCCeeEEEeeecCCCCCCCCCCCcHHHHHHHHHHHHc
Q 034345           15 LFQSQDVARDFGAACTPEFFLFKKDGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECVLS   77 (97)
Q Consensus        15 ~D~~q~va~a~gA~~TPe~fvld~~g~~~~~l~Y~G~IDd~~~~~~~~~t~~~L~~Ai~alLa   77 (97)
                      .|+..++++.||...+|+++++ ++|+  ..-+|.|..+           ...|.+.|+..+.
T Consensus        57 ~~~~~~l~~~~~v~~~Pt~~~~-~~G~--~~~~~~G~~~-----------~~~l~~~l~~~~~  105 (112)
T 2voc_A           57 VDENQETAGKYGVMSIPTLLVL-KDGE--VVETSVGFKP-----------KEALQELVNKHLL  105 (112)
T ss_dssp             TTTCCSHHHHTTCCSBSEEEEE-ETTE--EEEEEESCCC-----------HHHHHHHHHTTSC
T ss_pred             CCCCHHHHHHcCCCcccEEEEE-eCCE--EEEEEeCCCC-----------HHHHHHHHHHHHH
Confidence            4677899999999999999999 8884  2345666532           3356666655443

>1oaz_A Thioredoxin 1; immune system, antibody/complex, antibody, allergy, IGE, conformational diversity, multispecficity, redox-active center; 2.77A {Escherichia coli} SCOP: c.47.1.1

Probab=96.24  E-value=0.0018  Score=41.72  Aligned_cols=50  Identities=20%  Similarity=0.402  Sum_probs=36.4

Q ss_pred             EEEeChhhHHHHhCCccCceEEEEecCCCCCeeEEEeeecCCCCCCCCCCCcHHHHHHHHHHHH
Q 034345           13 ITLFQSQDVARDFGAACTPEFFLFKKDGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECVL   76 (97)
Q Consensus        13 vL~D~~q~va~a~gA~~TPe~fvld~~g~~~~~l~Y~G~IDd~~~~~~~~~t~~~L~~Ai~alL   76 (97)
                      +=.|...++++.||...+|+++++ ++|+  ..-+|.|..+           ...|.+.|+++|
T Consensus        73 vd~d~~~~l~~~~~v~~~Pt~~~~-~~G~--~~~~~~G~~~-----------~~~l~~~l~~~l  122 (123)
T 1oaz_A           73 LNIDQNPGTAPKYGIRGIPTLLLF-KNGE--VAATKVGALS-----------KGQLKEFLDANL  122 (123)
T ss_dssp             EETTSCTTTGGGGTCCBSSEEEEE-ESSS--EEEEEESCCC-----------HHHHHHHHTTTC
T ss_pred             EECCCCHHHHHHcCCCccCEEEEE-ECCE--EEEEEeCCCC-----------HHHHHHHHHHHh
Confidence            335778899999999999999999 8885  3445777542           236777666554

>1fo5_A Thioredoxin; disulfide oxidoreductase, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; NMR {Methanocaldococcus jannaschii} SCOP: c.47.1.1

Probab=96.17  E-value=0.0023  Score=37.35  Aligned_cols=44  Identities=18%  Similarity=0.386  Sum_probs=32.7

Q ss_pred             EeChhhHHHHhCCccCceEEEEecCCCCCeeEEEeeecCCCCCCCCCCCcHHHHHHHHHHHH
Q 034345           15 LFQSQDVARDFGAACTPEFFLFKKDGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECVL   76 (97)
Q Consensus        15 ~D~~q~va~a~gA~~TPe~fvld~~g~~~~~l~Y~G~IDd~~~~~~~~~t~~~L~~Ai~alL   76 (97)
                      .|++.++++.||...+|++++   +|    ++++.|..+..           .|++.|+++|
T Consensus        42 ~~~~~~~~~~~~v~~~Pt~~~---~G----~~~~~G~~~~~-----------~l~~~l~~~l   85 (85)
T 1fo5_A           42 VMENPQKAMEYGIMAVPTIVI---NG----DVEFIGAPTKE-----------ALVEAIKKRL   85 (85)
T ss_dssp             SSSSCCTTTSTTTCCSSEEEE---TT----EEECCSSSSSH-----------HHHHHHHHHC
T ss_pred             CCCCHHHHHHCCCcccCEEEE---CC----EEeeecCCCHH-----------HHHHHHHHhC
Confidence            356778999999999999988   67    45788864322           6777776653

>3gnj_A Thioredoxin domain protein; APC92103, STR genomics, PSI-2, protein structure initiative, midwest CENT structural genomics; 1.99A {Desulfitobacterium hafniense dcb-2} SCOP: c.47.1.0

Probab=96.16  E-value=0.0061  Score=37.11  Aligned_cols=51  Identities=20%  Similarity=0.426  Sum_probs=36.8

Q ss_pred             EEEeChhhHHHHhCCccCceEEEEecCCCCCeeEEEeeecCCCCCCCCCCCcHHHHHHHHHHHHc
Q 034345           13 ITLFQSQDVARDFGAACTPEFFLFKKDGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECVLS   77 (97)
Q Consensus        13 vL~D~~q~va~a~gA~~TPe~fvld~~g~~~~~l~Y~G~IDd~~~~~~~~~t~~~L~~Ai~alLa   77 (97)
                      +=.|...++++.||...+|+++++ ++|+  ...+|.|..+           ...|.+.|+.++.
T Consensus        60 vd~~~~~~l~~~~~v~~~Pt~~~~-~~g~--~~~~~~g~~~-----------~~~l~~~l~~~l~  110 (111)
T 3gnj_A           60 VDVEEEKTLFQRFSLKGVPQILYF-KDGE--YKGKMAGDVE-----------DDEVEQMIADVLE  110 (111)
T ss_dssp             EETTTCHHHHHHTTCCSSCEEEEE-ETTE--EEEEEESSCC-----------HHHHHHHHHHHHH
T ss_pred             EECCcChhHHHhcCCCcCCEEEEE-ECCE--EEEEEeccCC-----------HHHHHHHHHHHhc
Confidence            334777889999999999999999 5663  2446777532           3367777777653

>3hz4_A Thioredoxin; NYSGXRC, PSI-II, reduced form, protein structure initiative, structural genomics; 2.30A {Methanosarcina mazei}

Probab=96.13  E-value=0.00083  Score=43.83  Aligned_cols=50  Identities=24%  Similarity=0.271  Sum_probs=36.5

Q ss_pred             EeChhhHHHHhCCccCceEEEEecCCCCCeeEEEeeecCCCCCCCCCCCcHHHHHHHHHHHHcC
Q 034345           15 LFQSQDVARDFGAACTPEFFLFKKDGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECVLSG   78 (97)
Q Consensus        15 ~D~~q~va~a~gA~~TPe~fvld~~g~~~~~l~Y~G~IDd~~~~~~~~~t~~~L~~Ai~alLaG   78 (97)
                      .|...++++.||...+|+++++ ++|+  ...+|.|..+           ...|.+.|+.++..
T Consensus        64 ~~~~~~l~~~~~v~~~Pt~~~~-~~G~--~~~~~~G~~~-----------~~~l~~~l~~~l~~  113 (140)
T 3hz4_A           64 IATNPWTAEKYGVQGTPTFKFF-CHGR--PVWEQVGQIY-----------PSILKNAVRDMLQH  113 (140)
T ss_dssp             TTTCHHHHHHHTCCEESEEEEE-ETTE--EEEEEESSCC-----------HHHHHHHHHHHHHH
T ss_pred             CCcCHhHHHHCCCCcCCEEEEE-eCCc--EEEEEcCCCC-----------HHHHHHHHHHHhcc
Confidence            4778899999999999988888 6774  2346777532           33677777777754

>3emx_A Thioredoxin; structural genomics, oxidoreductase, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.25A {Aeropyrum pernix}

Probab=96.12  E-value=0.0086  Score=38.72  Aligned_cols=50  Identities=16%  Similarity=0.141  Sum_probs=34.6

Q ss_pred             eChhhHHHHhCCccCceEEEEecCCCCCeeEEEeeecCCCCCCCCCCCcHHHHHHHHHHHHcCC
Q 034345           16 FQSQDVARDFGAACTPEFFLFKKDGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECVLSGQ   79 (97)
Q Consensus        16 D~~q~va~a~gA~~TPe~fvld~~g~~~~~l~Y~G~IDd~~~~~~~~~t~~~L~~Ai~alLaG~   79 (97)
                      |+..++++.||...+|++++++ +|+  ..-++.|..+           ...++..|+.++.+.
T Consensus        79 d~~~~l~~~~~v~~~Pt~~~~~-~G~--~v~~~~G~~~-----------~~~~~~~i~~~~~~~  128 (135)
T 3emx_A           79 SAARLEMNKAGVEGTPTLVFYK-EGR--IVDKLVGATP-----------WSLKVEKAREIYGGE  128 (135)
T ss_dssp             HHHHHHHHHHTCCSSSEEEEEE-TTE--EEEEEESCCC-----------HHHHHHHHHHHC---
T ss_pred             hhhHHHHHHcCCceeCeEEEEc-CCE--EEEEEeCCCC-----------HHHHHHHHHHHhCCC
Confidence            6788999999999999766666 774  4556777643           336777777777653

>2l6c_A Thioredoxin; oxidoreductase; NMR {Desulfovibrio vulgaris} PDB: 2l6d_A

Probab=96.12  E-value=0.0044  Score=38.62  Aligned_cols=49  Identities=14%  Similarity=0.407  Sum_probs=34.8

Q ss_pred             EeChhhHHHHhCCccCceEEEEecCCCCCeeEEEeeecCCCCCCCCCCCcHHHHHHHHHHHHc
Q 034345           15 LFQSQDVARDFGAACTPEFFLFKKDGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECVLS   77 (97)
Q Consensus        15 ~D~~q~va~a~gA~~TPe~fvld~~g~~~~~l~Y~G~IDd~~~~~~~~~t~~~L~~Ai~alLa   77 (97)
                      .|...++++.||...+|+++++ ++|+  ..-++.|..+-           ..|+..|+..+.
T Consensus        58 ~~~~~~l~~~~~v~~~Pt~~~~-~~G~--~v~~~~G~~~~-----------~~l~~~~~~~~~  106 (110)
T 2l6c_A           58 SEARPELMKELGFERVPTLVFI-RDGK--VAKVFSGIMNP-----------RELQALYASIHH  106 (110)
T ss_dssp             GGGCHHHHHHTTCCSSCEEEEE-ESSS--EEEEEESCCCH-----------HHHHHHHHTC--
T ss_pred             CcCCHHHHHHcCCcccCEEEEE-ECCE--EEEEEcCCCCH-----------HHHHHHHHHHhh
Confidence            3567789999999999999999 7885  35567776432           257776665443

>2j23_A Thioredoxin; immune protein, autoreactivity, cross-reactivity, IGE, fungi, epitope, allergen; 1.41A {Malassezia sympodialis}

Probab=96.10  E-value=0.0059  Score=38.63  Aligned_cols=48  Identities=23%  Similarity=0.375  Sum_probs=34.9

Q ss_pred             EeChhhHHHHhCCccCceEEEEecCCCCCeeEEEeeecCCCCCCCCCCCcHHHHHHHHHHHHc
Q 034345           15 LFQSQDVARDFGAACTPEFFLFKKDGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECVLS   77 (97)
Q Consensus        15 ~D~~q~va~a~gA~~TPe~fvld~~g~~~~~l~Y~G~IDd~~~~~~~~~t~~~L~~Ai~alLa   77 (97)
                      .|...++++.||...+|++++++ +|+  ..-+|.|. +           ...|++.|+++++
T Consensus        74 ~d~~~~~~~~~~v~~~Pt~~~~~-~G~--~~~~~~G~-~-----------~~~l~~~l~~~l~  121 (121)
T 2j23_A           74 VDEQSQIAQEVGIRAMPTFVFFK-NGQ--KIDTVVGA-D-----------PSKLQAAITQHSA  121 (121)
T ss_dssp             TTTCHHHHHHHTCCSSSEEEEEE-TTE--EEEEEESS-C-----------HHHHHHHHHHHTC
T ss_pred             CcCCHHHHHHcCCCcccEEEEEE-CCe--EEeeEcCC-C-----------HHHHHHHHHHhhC
Confidence            45667899999999999988884 773  23456664 2           3378888887764

>3m9j_A Thioredoxin; oxidoreductase; 1.10A {Homo sapiens} SCOP: c.47.1.1 PDB: 3m9k_A 2hsh_A 1erv_A 2ifq_A 2ifq_B 1auc_A 1eru_A 1ert_A 3kd0_A 1aiu_A 3trx_A 4trx_A 1trs_A 1tru_A 1trv_A 1trw_A 3e3e_A* 1cqg_A 1cqh_A 1mdi_A ...

Probab=96.04  E-value=0.0059  Score=36.81  Aligned_cols=47  Identities=23%  Similarity=0.374  Sum_probs=33.9

Q ss_pred             EeChhhHHHHhCCccCceEEEEecCCCCCeeEEEeeecCCCCCCCCCCCcHHHHHHHHHHHH
Q 034345           15 LFQSQDVARDFGAACTPEFFLFKKDGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECVL   76 (97)
Q Consensus        15 ~D~~q~va~a~gA~~TPe~fvld~~g~~~~~l~Y~G~IDd~~~~~~~~~t~~~L~~Ai~alL   76 (97)
                      .|+..++++.||...+|+++++ ++|+  ..-+|.|. +           ...|++.|+.+|
T Consensus        59 ~~~~~~~~~~~~v~~~Pt~~~~-~~g~--~~~~~~g~-~-----------~~~l~~~l~~~l  105 (105)
T 3m9j_A           59 VDDCQDVASESEVKSMPTFQFF-KKGQ--KVGEFSGA-N-----------KEKLEATINELV  105 (105)
T ss_dssp             TTTCHHHHHHTTCCBSSEEEEE-ETTE--EEEEEESS-C-----------HHHHHHHHHHHC
T ss_pred             hhhhHHHHHHcCCCcCcEEEEE-ECCe--EEEEEeCC-C-----------HHHHHHHHHHhC
Confidence            4667889999999999999999 5663  24456665 2           236777777653

>2yj7_A LPBCA thioredoxin; oxidoreductase; 1.65A {Synthetic construct}

Probab=95.03  E-value=0.0011  Score=39.86  Aligned_cols=36  Identities=22%  Similarity=0.409  Sum_probs=28.0

Q ss_pred             EeChhhHHHHhCCccCceEEEEecCCCCCeeEEEeeecC
Q 034345           15 LFQSQDVARDFGAACTPEFFLFKKDGRRPFQLVYHGQFD   53 (97)
Q Consensus        15 ~D~~q~va~a~gA~~TPe~fvld~~g~~~~~l~Y~G~ID   53 (97)
                      .|+..++++.||...+|+++++ ++|+  ...+|.|..+
T Consensus        59 ~~~~~~~~~~~~v~~~Pt~~~~-~~g~--~~~~~~g~~~   94 (106)
T 2yj7_A           59 VDENPNTAAQYGIRSIPTLLLF-KNGQ--VVDRLVGAQP   94 (106)
Confidence            4677789999999999999999 6774  3446777653

>1xfl_A Thioredoxin H1; AT3G51030, structural genomics, protein structure initiative, CESG, center for eukaryotic structural genomics; NMR {Arabidopsis thaliana} SCOP: c.47.1.1

Probab=95.99  E-value=0.0064  Score=38.88  Aligned_cols=48  Identities=21%  Similarity=0.351  Sum_probs=33.6

Q ss_pred             EeChhhHHHHhCCccCceEEEEecCCCCCeeEEEeeecCCCCCCCCCCCcHHHHHHHHHHHHc
Q 034345           15 LFQSQDVARDFGAACTPEFFLFKKDGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECVLS   77 (97)
Q Consensus        15 ~D~~q~va~a~gA~~TPe~fvld~~g~~~~~l~Y~G~IDd~~~~~~~~~t~~~L~~Ai~alLa   77 (97)
                      .|+..++++.||...+|+++++ ++|+  ..-++.|. +           ...|++.|+++++
T Consensus        77 ~d~~~~l~~~~~v~~~Pt~~~~-~~G~--~~~~~~G~-~-----------~~~l~~~l~~~l~  124 (124)
T 1xfl_A           77 TDELKSVASDWAIQAMPTFMFL-KEGK--ILDKVVGA-K-----------KDELQSTIAKHLA  124 (124)
T ss_dssp             TTTSHHHHHHTTCCSSSEEEEE-ETTE--EEEEEESC-C-----------HHHHHHHHHHHCC
T ss_pred             CccCHHHHHHcCCCccCEEEEE-ECCE--EEEEEeCC-C-----------HHHHHHHHHHhcC
Confidence            4667789999999999997766 7873  23345552 1           2368888887753

>3cxg_A Putative thioredoxin; malaria, structural GEN oxidoreductase, structural genomics consortium, SGC; 2.00A {Plasmodium falciparum}

Probab=95.98  E-value=0.0048  Score=40.06  Aligned_cols=52  Identities=12%  Similarity=0.140  Sum_probs=36.4

Q ss_pred             EeChhhHHHHhCCccCceEEEE-ecCCCCCeeEEEeeecCCCCCCCCCCCcHHHHHHHHHHHHcC
Q 034345           15 LFQSQDVARDFGAACTPEFFLF-KKDGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECVLSG   78 (97)
Q Consensus        15 ~D~~q~va~a~gA~~TPe~fvl-d~~g~~~~~l~Y~G~IDd~~~~~~~~~t~~~L~~Ai~alLaG   78 (97)
                      .|+..++++.||...+|+++++ +++|++...-++.|. +           ...|.+.|+.++..
T Consensus        78 ~~~~~~l~~~~~v~~~Pt~~~~~~~~g~g~~~~~~~G~-~-----------~~~l~~~l~~~l~~  130 (133)
T 3cxg_A           78 VDIHPKLNDQHNIKALPTFEFYFNLNNEWVLVHTVEGA-N-----------QNDIEKAFQKYCLE  130 (133)
T ss_dssp             TTTCHHHHHHTTCCSSSEEEEEEEETTEEEEEEEEESC-C-----------HHHHHHHHHHHSEE
T ss_pred             ccchHHHHHhcCCCCCCEEEEEEecCCCeEEEEEEcCC-C-----------HHHHHHHHHHHHHh
Confidence            4667789999999999999999 566632112345553 2           33788888887753

>3f3q_A Thioredoxin-1; His TAG, electron transport, cytoplasm, deoxyribonucleotide synthesis, golgi apparatus, membrane, nucleus; 1.76A {Saccharomyces cerevisiae} PDB: 3f3r_A* 2i9h_A 2fa4_A 2hsy_A 3pin_A 4dss_B

Probab=95.96  E-value=0.0086  Score=37.18  Aligned_cols=49  Identities=24%  Similarity=0.334  Sum_probs=35.9

Q ss_pred             EEEeChhhHHHHhCCccCceEEEEecCCCCCeeEEEeeecCCCCCCCCCCCcHHHHHHHHHHHH
Q 034345           13 ITLFQSQDVARDFGAACTPEFFLFKKDGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECVL   76 (97)
Q Consensus        13 vL~D~~q~va~a~gA~~TPe~fvld~~g~~~~~l~Y~G~IDd~~~~~~~~~t~~~L~~Ai~alL   76 (97)
                      +=.|...++++.||...+|++++++ +|+  ...++.|. +           ...|++.|+.++
T Consensus        61 vd~~~~~~l~~~~~v~~~Pt~~~~~-~G~--~~~~~~G~-~-----------~~~l~~~i~~~l  109 (109)
T 3f3q_A           61 LDVDELGDVAQKNEVSAMPTLLLFK-NGK--EVAKVVGA-N-----------PAAIKQAIAANA  109 (109)
T ss_dssp             EETTTCHHHHHHTTCCSSSEEEEEE-TTE--EEEEEESS-C-----------HHHHHHHHHHHC
T ss_pred             EECCCCHHHHHHcCCCccCEEEEEE-CCE--EEEEEeCC-C-----------HHHHHHHHHhhC
Confidence            3457788999999999999999998 774  34556665 1           236888777653

>2vim_A Thioredoxin, TRX; thioredoxin fold, oxidoreductase; 1.38A {Fasciola hepatica}

Probab=95.95  E-value=0.0082  Score=35.98  Aligned_cols=47  Identities=21%  Similarity=0.363  Sum_probs=32.3

Q ss_pred             EeChhhHHHHhCCccCceEEEEecCCCCCeeEEEeeecCCCCCCCCCCCcHHHHHHHHHHHH
Q 034345           15 LFQSQDVARDFGAACTPEFFLFKKDGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECVL   76 (97)
Q Consensus        15 ~D~~q~va~a~gA~~TPe~fvld~~g~~~~~l~Y~G~IDd~~~~~~~~~t~~~L~~Ai~alL   76 (97)
                      .|...++++.||...+|++++++ +|+  ..-++.| .+           ...|++.|+++|
T Consensus        58 ~~~~~~~~~~~~v~~~Pt~~~~~-~g~--~~~~~~G-~~-----------~~~l~~~l~~~l  104 (104)
T 2vim_A           58 VDQNEEAAAKYSVTAMPTFVFIK-DGK--EVDRFSG-AN-----------ETKLRETITRHK  104 (104)
T ss_dssp             TTTCHHHHHHTTCCSSSEEEEEE-TTE--EEEEEES-SC-----------HHHHHHHHHHHC
T ss_pred             ccCCHHHHHHcCCccccEEEEEe-CCc--EEEEEeC-CC-----------HHHHHHHHHhhC
Confidence            35567899999999999977775 773  2345556 22           236888887654

>2i1u_A Thioredoxin, TRX, MPT46; redox protein, electron transport; 1.30A {Mycobacterium tuberculosis} PDB: 3nof_A 3o6t_A* 2l4q_A 2l59_A

Probab=95.92  E-value=0.0027  Score=39.43  Aligned_cols=50  Identities=22%  Similarity=0.311  Sum_probs=34.1

Q ss_pred             EeChhhHHHHhCCccCceEEEEecCCCCCeeEEEeeecCCCCCCCCCCCcHHHHHHHHHHHHcC
Q 034345           15 LFQSQDVARDFGAACTPEFFLFKKDGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECVLSG   78 (97)
Q Consensus        15 ~D~~q~va~a~gA~~TPe~fvld~~g~~~~~l~Y~G~IDd~~~~~~~~~t~~~L~~Ai~alLaG   78 (97)
                      .|+..++++.||...+|+++++. +|+  ...+|.|..+           ...|.+.|+.++++
T Consensus        70 ~~~~~~~~~~~~i~~~Pt~~~~~-~g~--~~~~~~G~~~-----------~~~l~~~l~~~l~~  119 (121)
T 2i1u_A           70 VDTNPETARNFQVVSIPTLILFK-DGQ--PVKRIVGAKG-----------KAALLRELSDVVPN  119 (121)
T ss_dssp             TTTCHHHHHHTTCCSSSEEEEEE-TTE--EEEEEESCCC-----------HHHHHHHTCSCCCC
T ss_pred             CCCCHHHHHhcCCCcCCEEEEEE-CCE--EEEEecCCCC-----------HHHHHHHHHHHHhh
Confidence            46678899999999999988885 773  2345666532           23577666655543

>3f9u_A Putative exported cytochrome C biogenesis-related; exported cytochrome C biogenesis-related protein, bacteroide fragilis; 2.20A {Bacteroides fragilis nctc 9343}

Probab=95.88  E-value=0.0026  Score=42.48  Aligned_cols=30  Identities=20%  Similarity=0.243  Sum_probs=24.4

Q ss_pred             HHHhCCccCceEEEEecCCCCCeeEEEeeecC
Q 034345           22 ARDFGAACTPEFFLFKKDGRRPFQLVYHGQFD   53 (97)
Q Consensus        22 a~a~gA~~TPe~fvld~~g~~~~~l~Y~G~ID   53 (97)
                      ++.||...+|+.++||++|+  +.-++.|..+
T Consensus       123 ~~~~~v~~~Pt~~lid~~G~--~~~~~~G~~~  152 (172)
T 3f9u_A          123 RVKFGANAQPFYVLIDNEGN--PLNKSYAYDE  152 (172)
T ss_dssp             HHHHSCCCSSEEEEECTTSC--BSSCCBCSCC
T ss_pred             HHHcCCCCcceEEEECCCCC--EEeeccCCCC
Confidence            79999999999999999995  3445567654

>2wz9_A Glutaredoxin-3; protein binding; 1.55A {Homo sapiens} PDB: 2diy_A

Probab=95.86  E-value=0.014  Score=38.47  Aligned_cols=52  Identities=13%  Similarity=0.247  Sum_probs=38.2

Q ss_pred             EeChhhHHHHhCCccCceEEEEecCCCCCeeEEEeeecCCCCCCCCCCCcHHHHHHHHHHHHcCCCC
Q 034345           15 LFQSQDVARDFGAACTPEFFLFKKDGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECVLSGQPV   81 (97)
Q Consensus        15 ~D~~q~va~a~gA~~TPe~fvld~~g~~~~~l~Y~G~IDd~~~~~~~~~t~~~L~~Ai~alLaG~~v   81 (97)
                      .|+..++++.||...+|++++++ +|+  ..-++.|. +           ...|.+.|+.++.....
T Consensus        71 ~~~~~~l~~~~~v~~~Pt~~~~~-~G~--~~~~~~G~-~-----------~~~l~~~i~~~l~~~~~  122 (153)
T 2wz9_A           71 AEGVPEVSEKYEISSVPTFLFFK-NSQ--KIDRLDGA-H-----------APELTKKVQRHASSGSF  122 (153)
T ss_dssp             TTTSHHHHHHTTCCSSSEEEEEE-TTE--EEEEEESS-C-----------HHHHHHHHHHHSCTTSS
T ss_pred             CCCCHHHHHHcCCCCCCEEEEEE-CCE--EEEEEeCC-C-----------HHHHHHHHHHHhccccC
Confidence            46677899999999999999999 884  23345552 1           23688999998876443

>2vm1_A Thioredoxin, thioredoxin H isoform 1.; oxidoreductase, protein disulfide reductase, thioredoxin-FOL; 1.7A {Hordeum vulgare var} PDB: 2vm2_A

Probab=95.77  E-value=0.012  Score=36.12  Aligned_cols=49  Identities=24%  Similarity=0.379  Sum_probs=34.6

Q ss_pred             EeChhhHHHHhCCccCceEEEEecCCCCCeeEEEeeecCCCCCCCCCCCcHHHHHHHHHHHHcC
Q 034345           15 LFQSQDVARDFGAACTPEFFLFKKDGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECVLSG   78 (97)
Q Consensus        15 ~D~~q~va~a~gA~~TPe~fvld~~g~~~~~l~Y~G~IDd~~~~~~~~~t~~~L~~Ai~alLaG   78 (97)
                      .|...++++.||...+|+++++ ++|+  ..-++.|. +           ...|.+.|+.+++.
T Consensus        67 ~~~~~~~~~~~~v~~~Pt~~~~-~~g~--~~~~~~g~-~-----------~~~l~~~l~~~~~~  115 (118)
T 2vm1_A           67 VDELKDVAEAYNVEAMPTFLFI-KDGE--KVDSVVGG-R-----------KDDIHTKIVALMGS  115 (118)
T ss_dssp             TTTSHHHHHHTTCCSBSEEEEE-ETTE--EEEEEESC-C-----------HHHHHHHHHHHHC-
T ss_pred             cccCHHHHHHcCCCcCcEEEEE-eCCe--EEEEecCC-C-----------HHHHHHHHHHHhcc
Confidence            4666789999999999998887 6773  23345552 1           33788888888764

>3kij_A Probable glutathione peroxidase 8; human PDI-peroxidase, membrane, oxidoreductase, transmembrane; 1.80A {Homo sapiens} SCOP: c.47.1.0 PDB: 3cyn_A

Probab=95.76  E-value=0.0032  Score=42.53  Aligned_cols=40  Identities=15%  Similarity=0.184  Sum_probs=24.6

Q ss_pred             cCce----EEEEecCCCCCeeEEEeeecCCCCCCCCCCCcHHHHHHHHHHHHc
Q 034345           29 CTPE----FFLFKKDGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECVLS   77 (97)
Q Consensus        29 ~TPe----~fvld~~g~~~~~l~Y~G~IDd~~~~~~~~~t~~~L~~Ai~alLa   77 (97)
                      .+|.    .||||++|+  ++-+|.|..+...       =...++.+|+++++
T Consensus       131 ~~p~~~~~~~lid~~G~--i~~~~~g~~~~~~-------l~~~i~~lL~~~~~  174 (180)
T 3kij_A          131 KEPRWNFWKYLVNPEGQ--VVKFWRPEEPIEV-------IRPDIAALVRQVII  174 (180)
T ss_dssp             CCCSSTTCEEEECTTSC--EEEEECTTCCGGG-------THHHHHHHHHHHHH
T ss_pred             CCccccceEEEECCCCC--EEEEECCCCCHHH-------HHHHHHHHHHHHhc
Confidence            4788    999999995  4445556543321       13456666666654

>1xwb_A Thioredoxin; dimerization, redox regulation, THI X-RAY electron transport; 2.20A {Drosophila melanogaster} SCOP: c.47.1.1 PDB: 1xw9_A 1xwc_A 1xwa_A

Probab=95.75  E-value=0.0082  Score=36.11  Aligned_cols=47  Identities=17%  Similarity=0.396  Sum_probs=31.8

Q ss_pred             EeChhhHHHHhCCccCceEEEEecCCCCCeeEEEeeecCCCCCCCCCCCcHHHHHHHHHHHH
Q 034345           15 LFQSQDVARDFGAACTPEFFLFKKDGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECVL   76 (97)
Q Consensus        15 ~D~~q~va~a~gA~~TPe~fvld~~g~~~~~l~Y~G~IDd~~~~~~~~~t~~~L~~Ai~alL   76 (97)
                      .|...++++.||...+|+++++ ++|+  ..-+|.| .+           ...|.+.|+++|
T Consensus        60 ~~~~~~~~~~~~v~~~Pt~~~~-~~G~--~~~~~~g-~~-----------~~~l~~~i~~~l  106 (106)
T 1xwb_A           60 VDECEDIAMEYNISSMPTFVFL-KNGV--KVEEFAG-AN-----------AKRLEDVIKANI  106 (106)
T ss_dssp             TTTCHHHHHHTTCCSSSEEEEE-ETTE--EEEEEES-CC-----------HHHHHHHHHHTC
T ss_pred             ccchHHHHHHcCCCcccEEEEE-cCCc--EEEEEcC-CC-----------HHHHHHHHHHhC
Confidence            4566789999999999996666 6773  2345556 22           235777776653

>4euy_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; 2.90A {Bacillus cereus}

Probab=95.72  E-value=0.0055  Score=37.56  Aligned_cols=50  Identities=20%  Similarity=0.252  Sum_probs=27.4

Q ss_pred             EEEeChhhHHHHhCCccCceEEEEecCCCCCeeEEEeeecCCCCCCCCCCCcHHHHHHHHHHHH
Q 034345           13 ITLFQSQDVARDFGAACTPEFFLFKKDGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECVL   76 (97)
Q Consensus        13 vL~D~~q~va~a~gA~~TPe~fvld~~g~~~~~l~Y~G~IDd~~~~~~~~~t~~~L~~Ai~alL   76 (97)
                      +=.|...++++.||...+|++++++ +|+  ..-++.|..+           ...|.+.|+.++
T Consensus        55 vd~~~~~~l~~~~~v~~~Pt~~~~~-~G~--~~~~~~g~~~-----------~~~l~~~l~~~~  104 (105)
T 4euy_A           55 ILLQDMQEIAGRYAVFTGPTVLLFY-NGK--EILRESRFIS-----------LENLERTIQLFE  104 (105)
T ss_dssp             EEECCC---------CCCCEEEEEE-TTE--EEEEEESSCC-----------HHHHHHHHHTTC
T ss_pred             EECCCCHHHHHhcCCCCCCEEEEEe-CCe--EEEEEeCCcC-----------HHHHHHHHHHhh
Confidence            3457888999999999999999995 774  3445667542           336777776554

>1x5e_A Thioredoxin domain containing protein 1; TMX, TXNDC1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=95.72  E-value=0.0049  Score=38.90  Aligned_cols=48  Identities=21%  Similarity=0.211  Sum_probs=36.1

Q ss_pred             EeChhhHHHHhCCccCceEEEEecCCCCCeeEEEeeecCCCCCCCCCCCcHHHHHHHHHHHHc
Q 034345           15 LFQSQDVARDFGAACTPEFFLFKKDGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECVLS   77 (97)
Q Consensus        15 ~D~~q~va~a~gA~~TPe~fvld~~g~~~~~l~Y~G~IDd~~~~~~~~~t~~~L~~Ai~alLa   77 (97)
                      .|...++++.||...+|+++++ ++|+   ..+|.|..           +...|.+.|+.++.
T Consensus        63 ~~~~~~~~~~~~v~~~Pt~~~~-~~G~---~~~~~G~~-----------~~~~l~~~l~~~~~  110 (126)
T 1x5e_A           63 VTEQPGLSGRFIINALPTIYHC-KDGE---FRRYQGPR-----------TKKDFINFISDKEW  110 (126)
T ss_dssp             TTTCHHHHHHTTCCSSSEEEEE-ETTE---EEECCSCC-----------CHHHHHHHHHTCGG
T ss_pred             CcCCHHHHHHcCCcccCEEEEE-eCCe---EEEeecCC-----------CHHHHHHHHHHHhh
Confidence            4677889999999999999999 7773   45666643           24478888877653

>1r26_A Thioredoxin; redox-active disulfide, electron transport; 1.40A {Trypanosoma} SCOP: c.47.1.1

Probab=95.71  E-value=0.012  Score=37.93  Aligned_cols=48  Identities=10%  Similarity=0.189  Sum_probs=34.9

Q ss_pred             EeChhhHHHHhCCccCceEEEEecCCCCCeeEEEeeecCCCCCCCCCCCcHHHHHHHHHHHHc
Q 034345           15 LFQSQDVARDFGAACTPEFFLFKKDGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECVLS   77 (97)
Q Consensus        15 ~D~~q~va~a~gA~~TPe~fvld~~g~~~~~l~Y~G~IDd~~~~~~~~~t~~~L~~Ai~alLa   77 (97)
                      .|+..++++.||...+|+++++ ++|+  ..-+|.| .+           ...|.+.|+.++.
T Consensus        76 ~d~~~~l~~~~~v~~~Pt~~i~-~~G~--~~~~~~G-~~-----------~~~l~~~l~~~l~  123 (125)
T 1r26_A           76 ADNNSEIVSKCRVLQLPTFIIA-RSGK--MLGHVIG-AN-----------PGMLRQKLRDIIK  123 (125)
T ss_dssp             TTTCHHHHHHTTCCSSSEEEEE-ETTE--EEEEEES-SC-----------HHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHcCCCcccEEEEE-eCCe--EEEEEeC-CC-----------HHHHHHHHHHHhc
Confidence            4667889999999999997766 7774  2335666 22           2368888888875

>2xc2_A Thioredoxinn; oxidoreductase, protein disulfide reductase; 1.56A {Schistosoma mansoni} PDB: 2xbq_A 2xbi_A

Probab=95.70  E-value=0.01  Score=36.93  Aligned_cols=46  Identities=17%  Similarity=0.215  Sum_probs=31.9

Q ss_pred             eChhhHHHHhCCccCceEEEEecCCCCCeeEEEeeecCCCCCCCCCCCcHHHHHHHHHHHH
Q 034345           16 FQSQDVARDFGAACTPEFFLFKKDGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECVL   76 (97)
Q Consensus        16 D~~q~va~a~gA~~TPe~fvld~~g~~~~~l~Y~G~IDd~~~~~~~~~t~~~L~~Ai~alL   76 (97)
                      |...++++.||...+|+++++ ++|+  ..-++.| .+           ...|++.|+.+|
T Consensus        72 ~~~~~~~~~~~v~~~Pt~~~~-~~G~--~~~~~~G-~~-----------~~~l~~~l~~~l  117 (117)
T 2xc2_A           72 DKLEETARKYNISAMPTFIAI-KNGE--KVGDVVG-AS-----------IAKVEDMIKKFI  117 (117)
T ss_dssp             TTSHHHHHHTTCCSSSEEEEE-ETTE--EEEEEES-SC-----------HHHHHHHHHHHC
T ss_pred             CccHHHHHHcCCCccceEEEE-eCCc--EEEEEeC-CC-----------HHHHHHHHHHhC
Confidence            566789999999999997666 6773  2334556 22           236777777653

>3aps_A DNAJ homolog subfamily C member 10; thioredoxin fold, CXXC motif, endoplasmic reticulum, oxidore; 1.90A {Mus musculus}

Probab=95.68  E-value=0.0059  Score=38.10  Aligned_cols=54  Identities=11%  Similarity=0.063  Sum_probs=40.2

Q ss_pred             EeChhhHHHHhCCccCceEEEEecCCCCCeeEEEeeecCCCCCCCCCCCcHHHHHHHHHHHHcC
Q 034345           15 LFQSQDVARDFGAACTPEFFLFKKDGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECVLSG   78 (97)
Q Consensus        15 ~D~~q~va~a~gA~~TPe~fvld~~g~~~~~l~Y~G~IDd~~~~~~~~~t~~~L~~Ai~alLaG   78 (97)
                      .|+..++++.||...+|++++++++|.   ..+|.|.--.       ..+...|.+.|+.+++.
T Consensus        61 ~~~~~~~~~~~~v~~~Pt~~~~~~~~~---~~~~~g~~~~-------~~~~~~l~~~l~~~l~~  114 (122)
T 3aps_A           61 CQAYPQTCQKAGIKAYPSVKLYQYERA---KKSIWEEQIN-------SRDAKTIAALIYGKLET  114 (122)
T ss_dssp             TTTCHHHHHHTTCCSSSEEEEEEEEGG---GTEEEEEEEC-------CSCHHHHHHHHHHHHHC
T ss_pred             CcCCHHHHHHcCCCccceEEEEeCCCc---cceeeccccC-------cCCHHHHHHHHHHHHHh
Confidence            356778999999999999999998874   5677886211       11345788888888864

>2xhf_A Peroxiredoxin 5; oxidoreductase, antioxidant enzymes; 1.30A {Alvinella pompejana}

Probab=95.58  E-value=0.02  Score=40.05  Aligned_cols=37  Identities=11%  Similarity=0.077  Sum_probs=31.2

Q ss_pred             ceeEEEeChhhHHHHhCCcc-----------CceEEEEecCCCCCeeEEEeee
Q 034345           10 MWLITLFQSQDVARDFGAAC-----------TPEFFLFKKDGRRPFQLVYHGQ   51 (97)
Q Consensus        10 ~fpvL~D~~q~va~a~gA~~-----------TPe~fvld~~g~~~~~l~Y~G~   51 (97)
                      +||+|-|++++++++||...           .-.+|||| +|    +++|.-.
T Consensus       103 ~f~lLSD~~~~~a~ayGv~~~~~~~g~g~~~~R~tfvId-dG----~V~~~~v  150 (171)
T 2xhf_A          103 KIRMLADMHGEFTRALGTELDSSKMLGNNRSRRYAMLID-DN----KIRSVST  150 (171)
T ss_dssp             CSEEEECTTSHHHHHHTCBCCCHHHHSSCCBCCEEEEEE-TT----EEEEEEE
T ss_pred             CeEEEEeCCchHHHHhCCceeccccCCCcceEEEEEEEe-CC----EEEEEEE
Confidence            89999999999999999752           24679998 88    7888864

>3apq_A DNAJ homolog subfamily C member 10; thioredoxin fold, DNAJ domain, endoplasmic reticulum, oxidor; 1.84A {Mus musculus}

Probab=95.49  E-value=0.016  Score=40.11  Aligned_cols=54  Identities=15%  Similarity=0.223  Sum_probs=40.7

Q ss_pred             EeChhhHHHHhCCccCceEEEEecCCCCCeeEEEeeecCCCCCCCCCCCcHHHHHHHHHHHHcCCCCC
Q 034345           15 LFQSQDVARDFGAACTPEFFLFKKDGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECVLSGQPVS   82 (97)
Q Consensus        15 ~D~~q~va~a~gA~~TPe~fvld~~g~~~~~l~Y~G~IDd~~~~~~~~~t~~~L~~Ai~alLaG~~v~   82 (97)
                      .|...++++.||...+|+++++ ++|+  ...+|.|..           +...|.+.|+.++......
T Consensus       154 ~~~~~~l~~~~~v~~~Pt~~~~-~~G~--~~~~~~G~~-----------~~~~l~~~i~~~l~~~~~~  207 (210)
T 3apq_A          154 CGDDRMLCRMKGVNSYPSLFIF-RSGM--AAVKYNGDR-----------SKESLVAFAMQHVRSTVTE  207 (210)
T ss_dssp             TTTCHHHHHHTTCCSSSEEEEE-CTTS--CCEECCSCC-----------CHHHHHHHHHHHHHCCSSC
T ss_pred             CCccHHHHHHcCCCcCCeEEEE-ECCC--ceeEecCCC-----------CHHHHHHHHHHhCccccee
Confidence            3677789999999999999999 7775  355677743           2447889999888765443

>1syr_A Thioredoxin; SGPP, structural genomics, PSI, protein structure initiative structural genomics of pathogenic protozoa consortium; 2.95A {Plasmodium falciparum} SCOP: c.47.1.1

Probab=95.30  E-value=0.013  Score=36.22  Aligned_cols=47  Identities=17%  Similarity=0.248  Sum_probs=32.1

Q ss_pred             EeChhhHHHHhCCccCceEEEEecCCCCCeeEEEeeecCCCCCCCCCCCcHHHHHHHHHHHH
Q 034345           15 LFQSQDVARDFGAACTPEFFLFKKDGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECVL   76 (97)
Q Consensus        15 ~D~~q~va~a~gA~~TPe~fvld~~g~~~~~l~Y~G~IDd~~~~~~~~~t~~~L~~Ai~alL   76 (97)
                      .|+..++++.||...+|+++++ ++|+  ..-+|.|. +           ...|++.|++++
T Consensus        65 ~~~~~~~~~~~~v~~~Pt~~~~-~~G~--~~~~~~G~-~-----------~~~l~~~l~~~l  111 (112)
T 1syr_A           65 VDEVSEVTEKENITSMPTFKVY-KNGS--SVDTLLGA-N-----------DSALKQLIEKYA  111 (112)
T ss_dssp             TTTTHHHHHHTTCCSSSEEEEE-ETTE--EEEEEESC-C-----------HHHHHHHHHTTC
T ss_pred             CCCCHHHHHHcCCCcccEEEEE-ECCc--EEEEEeCC-C-----------HHHHHHHHHHhh
Confidence            3566789999999999986666 5773  23355664 2           236777777654

>3d6i_A Monothiol glutaredoxin-3; thioredoxin-like, electron transport, redox- active center, transport, oxidoreductase; HET: CME; 1.50A {Saccharomyces cerevisiae}

Probab=95.29  E-value=0.018  Score=35.32  Aligned_cols=48  Identities=15%  Similarity=0.263  Sum_probs=33.7

Q ss_pred             EeChhhHHHHhCCccCceEEEEecCCCCCeeEEEeeecCCCCCCCCCCCcHHHHHHHHHHHHc
Q 034345           15 LFQSQDVARDFGAACTPEFFLFKKDGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECVLS   77 (97)
Q Consensus        15 ~D~~q~va~a~gA~~TPe~fvld~~g~~~~~l~Y~G~IDd~~~~~~~~~t~~~L~~Ai~alLa   77 (97)
                      .|...++++.||...+|+++++ ++|+  ..-+|.|. +           ...|++.|+.+++
T Consensus        62 ~~~~~~~~~~~~v~~~Pt~~~~-~~G~--~~~~~~G~-~-----------~~~l~~~l~~~~~  109 (112)
T 3d6i_A           62 ADENSEISELFEISAVPYFIII-HKGT--ILKELSGA-D-----------PKEYVSLLEDCKN  109 (112)
T ss_dssp             TTTCHHHHHHTTCCSSSEEEEE-ETTE--EEEEECSC-C-----------HHHHHHHHHHHHH
T ss_pred             cccCHHHHHHcCCCcccEEEEE-ECCE--EEEEecCC-C-----------HHHHHHHHHHHHh
Confidence            3567789999999999998888 5773  23345553 1           1258888887765

>1gh2_A Thioredoxin-like protein; redox-active center, electron transport; 2.22A {Homo sapiens} SCOP: c.47.1.1

Probab=95.29  E-value=0.022  Score=34.63  Aligned_cols=47  Identities=26%  Similarity=0.323  Sum_probs=33.0

Q ss_pred             EeChhhHHHHhCCccCceEEEEecCCCCCeeEEEeeecCCCCCCCCCCCcHHHHHHHHHHHH
Q 034345           15 LFQSQDVARDFGAACTPEFFLFKKDGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECVL   76 (97)
Q Consensus        15 ~D~~q~va~a~gA~~TPe~fvld~~g~~~~~l~Y~G~IDd~~~~~~~~~t~~~L~~Ai~alL   76 (97)
                      .|+..++++.||...+|+++++ ++|+  ..-+|.|. +           ...|++.|+.++
T Consensus        60 ~~~~~~~~~~~~v~~~Pt~~~~-~~G~--~~~~~~G~-~-----------~~~l~~~l~~~l  106 (107)
T 1gh2_A           60 VHQCQGTAATNNISATPTFQFF-RNKV--RIDQYQGA-D-----------AVGLEEKIKQHL  106 (107)
T ss_dssp             TTTSHHHHHHTTCCSSSEEEEE-ETTE--EEEEEESS-C-----------HHHHHHHHHHHH
T ss_pred             CccCHHHHHhcCCCcccEEEEE-ECCe--EEEEEeCC-C-----------HHHHHHHHHHhc
Confidence            4667789999999999998888 6773  23456663 1           124777777665

>1mek_A Protein disulfide isomerase; electron transport, redox-active center, endoplasmic reticulum; NMR {Homo sapiens} SCOP: c.47.1.2

Probab=95.28  E-value=0.0071  Score=36.97  Aligned_cols=47  Identities=19%  Similarity=0.319  Sum_probs=33.2

Q ss_pred             ChhhHHHHhCCccCceEEEEecCCCCCee--EEEeeecCCCCCCCCCCCcHHHHHHHHHHHHc
Q 034345           17 QSQDVARDFGAACTPEFFLFKKDGRRPFQ--LVYHGQFDDSRPSNNLPVTGRDIRLAIECVLS   77 (97)
Q Consensus        17 ~~q~va~a~gA~~TPe~fvld~~g~~~~~--l~Y~G~IDd~~~~~~~~~t~~~L~~Ai~alLa   77 (97)
                      ...++++.||...+|+++++ ++|+  ..  .+|.|..+           ...|.+.|+.++.
T Consensus        69 ~~~~~~~~~~v~~~Pt~~~~-~~g~--~~~~~~~~g~~~-----------~~~l~~~l~~~~~  117 (120)
T 1mek_A           69 EESDLAQQYGVRGYPTIKFF-RNGD--TASPKEYTAGRE-----------ADDIVNWLKKRTG  117 (120)
T ss_dssp             TCCSSHHHHTCCSSSEEEEE-ESSC--SSSCEECCCCSS-----------HHHHHHHHHTTSC
T ss_pred             CCHHHHHHCCCCcccEEEEE-eCCC--cCCcccccCccC-----------HHHHHHHHHhccC
Confidence            45689999999999999999 5664  13  57777432           3367777766553

>1faa_A Thioredoxin F; electron transport; 1.85A {Spinacia oleracea} SCOP: c.47.1.1

Probab=95.21  E-value=0.022  Score=35.59  Aligned_cols=45  Identities=18%  Similarity=0.273  Sum_probs=31.3

Q ss_pred             ChhhHHHHhCCccCceEEEEecCCCCCeeEEEeeecCCCCCCCCCCCcHHHHHHHHHHHH
Q 034345           17 QSQDVARDFGAACTPEFFLFKKDGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECVL   76 (97)
Q Consensus        17 ~~q~va~a~gA~~TPe~fvld~~g~~~~~l~Y~G~IDd~~~~~~~~~t~~~L~~Ai~alL   76 (97)
                      +..++++.||...+|+ |++.++|+  ..-++.|. +           ...|.+.|++++
T Consensus        79 ~~~~~~~~~~v~~~Pt-~~~~~~G~--~~~~~~G~-~-----------~~~l~~~i~~~~  123 (124)
T 1faa_A           79 ENKTLAKELGIRVVPT-FKILKENS--VVGEVTGA-K-----------YDKLLEAIQAAR  123 (124)
T ss_dssp             TTHHHHHHHCCSSSSE-EEEEETTE--EEEEEESS-C-----------HHHHHHHHHHHT
T ss_pred             chHHHHHHcCCCeeeE-EEEEeCCc--EEEEEcCC-C-----------HHHHHHHHHHhh
Confidence            4678999999999999 55667884  23345553 1           236888887765

>1wmj_A Thioredoxin H-type; structural genomics, program for RICE genome research, oxidoreductase; NMR {Oryza sativa}

Probab=95.21  E-value=0.0093  Score=37.36  Aligned_cols=50  Identities=20%  Similarity=0.289  Sum_probs=35.6

Q ss_pred             eChhhHHHHhCCccCceEEEEecCCCCCeeEEEeeecCCCCCCCCCCCcHHHHHHHHHHHHcCCC
Q 034345           16 FQSQDVARDFGAACTPEFFLFKKDGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECVLSGQP   80 (97)
Q Consensus        16 D~~q~va~a~gA~~TPe~fvld~~g~~~~~l~Y~G~IDd~~~~~~~~~t~~~L~~Ai~alLaG~~   80 (97)
                      |..+++++.||...+|+++++ ++|+  ..-++.| .+.           ..|.+.|+.++...+
T Consensus        76 ~~~~~~~~~~~v~~~Pt~~~~-~~g~--~~~~~~g-~~~-----------~~l~~~l~~~~~~~~  125 (130)
T 1wmj_A           76 DELKEVAEKYNVEAMPTFLFI-KDGA--EADKVVG-ARK-----------DDLQNTIVKHVGATA  125 (130)
T ss_dssp             TTSGGGHHHHTCCSSCCCCBC-TTTT--CCBCCCT-TCT-----------TTHHHHHHHHTSSSC
T ss_pred             cchHHHHHHcCCCccceEEEE-eCCe--EEEEEeC-CCH-----------HHHHHHHHHHHhccC
Confidence            667889999999999997777 7774  2334455 221           258888888887644

>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}

Probab=95.17  E-value=0.017  Score=40.41  Aligned_cols=56  Identities=21%  Similarity=0.415  Sum_probs=42.3

Q ss_pred             EEeChhhHHHHhCCccCceEEEEecCCCCCeeEEEeeecCCCCCCCCCCCcHHHHHHHHHHHHcCCCCCC
Q 034345           14 TLFQSQDVARDFGAACTPEFFLFKKDGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECVLSGQPVSS   83 (97)
Q Consensus        14 L~D~~q~va~a~gA~~TPe~fvld~~g~~~~~l~Y~G~IDd~~~~~~~~~t~~~L~~Ai~alLaG~~v~~   83 (97)
                      =.|...++++.||...+|++++++ +|+  ...+|.|..+           ...|.+.|+.++++.....
T Consensus        69 d~d~~~~l~~~~~v~~~Pt~~~~~-~G~--~~~~~~G~~~-----------~~~l~~~l~~~l~~~~~~s  124 (222)
T 3dxb_A           69 NIDQNPGTAPKYGIRGIPTLLLFK-NGE--VAATKVGALS-----------KGQLKEFLDANLAGSAMES  124 (222)
T ss_dssp             ETTTCTTTGGGGTCCSBSEEEEEE-TTE--EEEEEESCCC-----------HHHHHHHHHHHSCCSCCBC
T ss_pred             ECCCCHHHHHHcCCCcCCEEEEEE-CCe--EEEEeccccC-----------hHHHHHHHHhhcccccccc
Confidence            346777899999999999998886 664  3457777643           4479999999998765543

>3idv_A Protein disulfide-isomerase A4; thioredoxin-like fold, disulfide bond, endoplasmic reticulum isomerase, redox-active center; 1.95A {Homo sapiens} PDB: 2dj2_A

Probab=95.16  E-value=0.031  Score=38.53  Aligned_cols=50  Identities=20%  Similarity=0.282  Sum_probs=38.0

Q ss_pred             EeChhhHHHHhCCccCceEEEEecCCCCCeeEEEeeecCCCCCCCCCCCcHHHHHHHHHHHHcCC
Q 034345           15 LFQSQDVARDFGAACTPEFFLFKKDGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECVLSGQ   79 (97)
Q Consensus        15 ~D~~q~va~a~gA~~TPe~fvld~~g~~~~~l~Y~G~IDd~~~~~~~~~t~~~L~~Ai~alLaG~   79 (97)
                      .|...++++.||...+|++++++. |.   .+.|.|..+           ...+...|+.++...
T Consensus        75 ~~~~~~l~~~~~v~~~Pt~~~~~~-g~---~~~~~g~~~-----------~~~l~~~i~~~~~~~  124 (241)
T 3idv_A           75 ATSASVLASRFDVSGYPTIKILKK-GQ---AVDYEGSRT-----------QEEIVAKVREVSQPD  124 (241)
T ss_dssp             TTTCHHHHHHTTCCSSSEEEEEET-TE---EEECCSCSC-----------HHHHHHHHHHHHSTT
T ss_pred             ccCCHHHHHhcCCCcCCEEEEEcC-CC---cccccCccc-----------HHHHHHHHhhccCcc
Confidence            456778999999999999999974 42   677887543           346888888877654

>4hde_A SCO1/SENC family lipoprotein; structural genomics, the center for structural genomics of I diseases, csgid, niaid; HET: MSE; 1.32A {Bacillus anthracis}

Probab=94.81  E-value=0.073  Score=35.90  Aligned_cols=39  Identities=18%  Similarity=0.323  Sum_probs=25.7

Q ss_pred             ccCceEEEEecCCCCCeeEEEeeecCCCCCCCCCCCcHHHHHHHHHHHHc
Q 034345           28 ACTPEFFLFKKDGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECVLS   77 (97)
Q Consensus        28 ~~TPe~fvld~~g~~~~~l~Y~G~IDd~~~~~~~~~t~~~L~~Ai~alLa   77 (97)
                      .++|.+||||++|+  ++-+|.|.-+..         ...|.+.|+.|+.
T Consensus       132 ~H~~~~~liD~~G~--i~~~~~g~~~~~---------~~~l~~~ik~Lle  170 (170)
T 4hde_A          132 IHGTSFYLIDQNGK--VMKKYSGISNTP---------YEDIIRDMKRLAE  170 (170)
T ss_dssp             BCCCEEEEECTTSC--EEEEEESSSSCC---------HHHHHHHHHHHHC
T ss_pred             EeeeEEEEEcCCCe--EEEEECCCCCCC---------HHHHHHHHHHHhC
Confidence            35789999999995  455577743222         3356667777763

>3uvt_A Thioredoxin domain-containing protein 5; thioredoxin-like fold, isomerase; 2.00A {Homo sapiens} PDB: 2diz_A 3uj1_A

Probab=94.68  E-value=0.033  Score=33.59  Aligned_cols=35  Identities=14%  Similarity=0.295  Sum_probs=26.1

Q ss_pred             EeChhhHHHHhCCccCceEEEEecCCCCCeeEEEeeec
Q 034345           15 LFQSQDVARDFGAACTPEFFLFKKDGRRPFQLVYHGQF   52 (97)
Q Consensus        15 ~D~~q~va~a~gA~~TPe~fvld~~g~~~~~l~Y~G~I   52 (97)
                      .|...++++.||...+|+++++ ++|+  ...+|.|..
T Consensus        64 ~~~~~~l~~~~~v~~~Pt~~~~-~~g~--~~~~~~g~~   98 (111)
T 3uvt_A           64 CTAERNICSKYSVRGYPTLLLF-RGGK--KVSEHSGGR   98 (111)
T ss_dssp             TTTCHHHHHHTTCCSSSEEEEE-ETTE--EEEEECSCC
T ss_pred             ccccHhHHHhcCCCcccEEEEE-eCCc--EEEeccCCc
Confidence            3566689999999999998888 5663  344677753

>3q6o_A Sulfhydryl oxidase 1; protein disulfide isomerase, thioredoxin, thioredoxin fold, oxidoreductase, reductive methylation; HET: MLY; 2.05A {Homo sapiens}

Probab=94.61  E-value=0.057  Score=38.03  Aligned_cols=43  Identities=19%  Similarity=0.175  Sum_probs=35.7

Q ss_pred             hhcceeEEEeChhhHHHHhCCccCceEEEEecCCCCCeeEEEeeec
Q 034345            7 LFLMWLITLFQSQDVARDFGAACTPEFFLFKKDGRRPFQLVYHGQF   52 (97)
Q Consensus         7 ~~~~fpvL~D~~q~va~a~gA~~TPe~fvld~~g~~~~~l~Y~G~I   52 (97)
                      ..+.++...|.+.++++.||.+..|.++||+++|+   ...|...+
T Consensus       183 ~~i~v~~~~~~~~~l~~~f~v~~~Pslvl~~~~g~---~~~~~~~~  225 (244)
T 3q6o_A          183 KGVAVRRVLNTEANVVRKFGVTDFPSCYLLFRNGS---VSRVPVLM  225 (244)
T ss_dssp             TTEEEEEEETTCHHHHHHHTCCCSSEEEEEETTSC---EEECCCSS
T ss_pred             CceEEEEEeCchHHHHHHcCCCCCCeEEEEeCCCC---eEeecccc
Confidence            44667888888899999999999999999999996   66666443

>1a8l_A Protein disulfide oxidoreductase; PDI, thioredoxin fold; 1.90A {Pyrococcus furiosus} SCOP: c.47.1.2 c.47.1.2 PDB: 1j08_A

Probab=94.55  E-value=0.039  Score=37.93  Aligned_cols=48  Identities=10%  Similarity=0.261  Sum_probs=34.9

Q ss_pred             EeChhhHHHHhCCccCceEEEEecCCCCCeeEEEeeecCCCCCCCCCCCcHHHHHHHHHHHH
Q 034345           15 LFQSQDVARDFGAACTPEFFLFKKDGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECVL   76 (97)
Q Consensus        15 ~D~~q~va~a~gA~~TPe~fvld~~g~~~~~l~Y~G~IDd~~~~~~~~~t~~~L~~Ai~alL   76 (97)
                      .|+..++++.||...+|+++++ ++|+  ...+|.|..+           ...|.+.|+.++
T Consensus       178 ~~~~~~l~~~~~v~~~Pt~~~~-~~G~--~~~~~~G~~~-----------~~~l~~~l~~~l  225 (226)
T 1a8l_A          178 AIEYPEWADQYNVMAVPKIVIQ-VNGE--DRVEFEGAYP-----------EKMFLEKLLSAL  225 (226)
T ss_dssp             GGGCHHHHHHTTCCSSCEEEEE-ETTE--EEEEEESCCC-----------HHHHHHHHHHHH
T ss_pred             cccCHHHHHhCCCcccCeEEEE-eCCc--eeEEEcCCCC-----------HHHHHHHHHHhh
Confidence            4566789999999999997777 5774  3667888643           235777777665

>2dj3_A Protein disulfide-isomerase A4; protein ERP-72, ERP72, CAI, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=94.49  E-value=0.042  Score=34.55  Aligned_cols=52  Identities=8%  Similarity=0.142  Sum_probs=37.0

Q ss_pred             eChhhHHHHhCCccCceEEEEecCCCCCeeEEEeee-cCCCCCCCCCCCcHHHHHHHHHHHHcCC
Q 034345           16 FQSQDVARDFGAACTPEFFLFKKDGRRPFQLVYHGQ-FDDSRPSNNLPVTGRDIRLAIECVLSGQ   79 (97)
Q Consensus        16 D~~q~va~a~gA~~TPe~fvld~~g~~~~~l~Y~G~-IDd~~~~~~~~~t~~~L~~Ai~alLaG~   79 (97)
                      |....+++.|+...+|+++++++.+.. ..+.|.|. .+..           .|...|+.++...
T Consensus        68 ~~~~~~~~~~~v~~~Pt~~~~~~g~~~-~~~~~~gg~~~~~-----------~l~~~l~~~~~~~  120 (133)
T 2dj3_A           68 TANDITNDQYKVEGFPTIYFAPSGDKK-NPIKFEGGNRDLE-----------HLSKFIDEHATKR  120 (133)
T ss_dssp             TTSCCCCSSCCCSSSSEEEEECTTCTT-SCEECCSSCCSTT-----------HHHHHHHHHSSSC
T ss_pred             CcCHHHHhhcCCCcCCEEEEEeCCCcc-cceEecCCCcCHH-----------HHHHHHHHhcccc
Confidence            345677889999999999999987642 13567743 3322           6888888887654

>3ul3_B Thioredoxin, thioredoxin-2; PTEX, oxidoreductase; 2.90A {Plasmodium falciparum}

Probab=94.38  E-value=0.033  Score=35.29  Aligned_cols=36  Identities=19%  Similarity=0.309  Sum_probs=27.6

Q ss_pred             EEEeChhhHHHHhCCccCceEEEEecCCCCCeeEEEeee
Q 034345           13 ITLFQSQDVARDFGAACTPEFFLFKKDGRRPFQLVYHGQ   51 (97)
Q Consensus        13 vL~D~~q~va~a~gA~~TPe~fvld~~g~~~~~l~Y~G~   51 (97)
                      +=.|...++++.||...+|+++++ ++|+  ...+|.|.
T Consensus        80 vd~d~~~~l~~~~~v~~~Pt~~~~-~~G~--~~~~~~G~  115 (128)
T 3ul3_B           80 VDLDKNESLARKFSVKSLPTIILL-KNKT--MLARKDHF  115 (128)
T ss_dssp             EEGGGCHHHHHHTTCCSSSEEEEE-ETTE--EEEEESSC
T ss_pred             EECCCCHHHHHHcCCCCcCEEEEE-ECCE--EEEEecCC
Confidence            445777899999999999999999 5774  34456664

>2qgv_A Hydrogenase-1 operon protein HYAE; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Shigella flexneri 2A} PDB: 2hfd_A

Probab=94.26  E-value=0.041  Score=37.67  Aligned_cols=51  Identities=24%  Similarity=0.352  Sum_probs=36.4

Q ss_pred             EeChhhHHHHhCCccCceEEEEecCCCCCeeEEEeeecCCCCCCCCCCCcHHHHHHHHHHHHcCC
Q 034345           15 LFQSQDVARDFGAACTPEFFLFKKDGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECVLSGQ   79 (97)
Q Consensus        15 ~D~~q~va~a~gA~~TPe~fvld~~g~~~~~l~Y~G~IDd~~~~~~~~~t~~~L~~Ai~alLaG~   79 (97)
                      .|+.+++|..||....|+..+| ++|+  ..=+..|..           ....|.+.|+++++..
T Consensus        77 vDe~~~lA~~ygV~sIPTlilF-k~G~--~v~~~~G~~-----------~k~~l~~~i~~~l~~~  127 (140)
T 2qgv_A           77 LEQSEAIGDRFGAFRFPATLVF-TGGN--YRGVLNGIH-----------PWAELINLMRGLVEPQ  127 (140)
T ss_dssp             HHHHHHHHHHHTCCSSSEEEEE-ETTE--EEEEEESCC-----------CHHHHHHHHHHHHC--
T ss_pred             CCCCHHHHHHcCCccCCEEEEE-ECCE--EEEEEecCC-----------CHHHHHHHHHHHhcCC
Confidence            5889999999999999999998 5663  233344432           2347888899888543

>3gix_A Thioredoxin-like protein 4B; PRE-mRNA splicing, TXNL4B, DLP, cell cycle, mRNA processing, mRNA splicing, nucleus, phosphoprotein, splicing; HET: SUC; 1.33A {Homo sapiens} SCOP: c.47.1.0 PDB: 1xbs_A

Probab=94.23  E-value=0.077  Score=35.12  Aligned_cols=60  Identities=22%  Similarity=0.183  Sum_probs=37.5

Q ss_pred             EeChhhHHHHhCCccCceEEEEecCCCCCeeEEEeeecCCCCCCCCCCCcHHHHHHHHHHHHcC
Q 034345           15 LFQSQDVARDFGAACTPEFFLFKKDGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECVLSG   78 (97)
Q Consensus        15 ~D~~q~va~a~gA~~TPe~fvld~~g~~~~~l~Y~G~IDd~~~~~~~~~t~~~L~~Ai~alLaG   78 (97)
                      .|+..++++.|+...+|+++ ++++|+  ......|.-++.. -.+...+...|.+.|+.++.|
T Consensus        63 ~d~~~~l~~~~~v~~~Pt~~-~~~~G~--~v~~~~g~~~~~~-~~G~~~~~~~l~~~l~~~~~~  122 (149)
T 3gix_A           63 VDQTAVYTQYFDISYIPSTV-FFFNGQ--HMKVDYGSPDHTK-FVGSFKTKQDFIDLIEVIYRG  122 (149)
T ss_dssp             TTTCCHHHHHTTCCSSSEEE-EEETTE--EEEEECSSSCCSC-EESCCSSHHHHHHHHHHHHHH
T ss_pred             CCcCHHHHHHcCCCccCeEE-EEECCe--EEEeecCCCCCCe-EeeecCCHHHHHHHHHHHHHH
Confidence            48889999999999999999 667774  1212233322221 111123456788888777644

>3h79_A Thioredoxin-like protein; thioredoxin fold, catalytic cysteines missing, unknown funct; 1.50A {Trypanosoma cruzi} SCOP: c.47.1.0

Probab=94.14  E-value=0.044  Score=34.54  Aligned_cols=37  Identities=16%  Similarity=0.183  Sum_probs=28.5

Q ss_pred             EeChhhHHHHhCCccCceEEEEecCCCCCeeEEEeeec
Q 034345           15 LFQSQDVARDFGAACTPEFFLFKKDGRRPFQLVYHGQF   52 (97)
Q Consensus        15 ~D~~q~va~a~gA~~TPe~fvld~~g~~~~~l~Y~G~I   52 (97)
                      .|+..++++.|+...+|+++++++.+.. ....|.|..
T Consensus        78 ~~~~~~l~~~~~v~~~Pt~~~~~~g~~~-~~~~~~G~~  114 (127)
T 3h79_A           78 GEKYPDVIERMRVSGFPTMRYYTRIDKQ-EPFEYSGQR  114 (127)
T ss_dssp             TTTCHHHHHHTTCCSSSEEEEECSSCSS-SCEECCSCC
T ss_pred             ccccHhHHHhcCCccCCEEEEEeCCCCC-CceEecCCc
Confidence            3566789999999999999999887741 016788753

>2djk_A PDI, protein disulfide-isomerase; thioredoxin fold; NMR {Humicola insolens} SCOP: c.47.1.2 PDB: 2kp2_A

Probab=93.89  E-value=0.024  Score=36.72  Aligned_cols=53  Identities=15%  Similarity=0.218  Sum_probs=37.0

Q ss_pred             eChhhHHHHhCCcc--CceEEEEec-CCCCCeeEEEeeecCCCCCCCCCCCcHHHHHHHHHHHHcCCC
Q 034345           16 FQSQDVARDFGAAC--TPEFFLFKK-DGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECVLSGQP   80 (97)
Q Consensus        16 D~~q~va~a~gA~~--TPe~fvld~-~g~~~~~l~Y~G~IDd~~~~~~~~~t~~~L~~Ai~alLaG~~   80 (97)
                      |+.++++..||...  .|++.+++. +|.    . |  ++...     ...+...|++-|+++++|+-
T Consensus        63 d~~~~~a~~~gi~~~~iPtl~i~~~~~g~----~-~--~~~~~-----g~~~~~~l~~fi~~~l~Gkl  118 (133)
T 2djk_A           63 KAFGAHAGNLNLKTDKFPAFAIQEVAKNQ----K-F--PFDQE-----KEITFEAIKAFVDDFVAGKI  118 (133)
T ss_dssp             TTTGGGTTTTTCCSSSSSEEEEECTTTCC----B-C--CCCSS-----SCCCHHHHHHHHHHHHHTCC
T ss_pred             HHhHHHHHHcCCCcccCCEEEEEecCcCc----c-c--CCCCc-----cccCHHHHHHHHHHHHcCCc
Confidence            56678999999998  999999985 452    2 4  22100     11235589999999999864

>2oe3_A Thioredoxin-3; electron transport, alpha/beta sandwich, oxidized, dimer; 1.80A {Saccharomyces cerevisiae} PDB: 2oe1_A 2oe0_A

Probab=93.84  E-value=0.039  Score=34.59  Aligned_cols=34  Identities=29%  Similarity=0.418  Sum_probs=25.6

Q ss_pred             EeChhhHHHHhCCccCceEEEEecCCCCCeeEEEeee
Q 034345           15 LFQSQDVARDFGAACTPEFFLFKKDGRRPFQLVYHGQ   51 (97)
Q Consensus        15 ~D~~q~va~a~gA~~TPe~fvld~~g~~~~~l~Y~G~   51 (97)
                      .|+..++++.||...+|+++++ ++|+  ..-+|.|.
T Consensus        69 ~~~~~~l~~~~~v~~~Pt~~~~-~~G~--~~~~~~G~  102 (114)
T 2oe3_A           69 VDESPDIAKECEVTAMPTFVLG-KDGQ--LIGKIIGA  102 (114)
T ss_dssp             TTTCHHHHHHTTCCSBSEEEEE-ETTE--EEEEEESS
T ss_pred             CCCCHHHHHHCCCCcccEEEEE-eCCe--EEEEEeCC
Confidence            3566789999999999998776 7774  23456665

>1v58_A Thiol:disulfide interchange protein DSBG; reduced DSBG, redox protein, protein disulfide isomerase, thioredoxin fold; 1.70A {Escherichia coli} SCOP: c.47.1.9 d.17.3.1 PDB: 1v57_A 2h0i_A 2h0h_A 2h0g_A 2iy2_A

Probab=93.74  E-value=0.021  Score=41.01  Aligned_cols=49  Identities=20%  Similarity=0.365  Sum_probs=33.7

Q ss_pred             EeChhhHHHHhCCccCceEEEEecCCCCCeeEEEeeecCCCCCCCCCCCcHHHHHHHHHHHHc
Q 034345           15 LFQSQDVARDFGAACTPEFFLFKKDGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECVLS   77 (97)
Q Consensus        15 ~D~~q~va~a~gA~~TPe~fvld~~g~~~~~l~Y~G~IDd~~~~~~~~~t~~~L~~Ai~alLa   77 (97)
                      +|...++++.+|...||.+|+.+.+|+   ..+..|..+-           ..|+++|+..+.
T Consensus       185 v~~~~~l~~~~gv~gtPt~vi~~~~G~---~~~~~G~~~~-----------~~L~~~l~~~~~  233 (241)
T 1v58_A          185 LSDNEKLMDDLGANVTPAIYYMSKENT---LQQAVGLPDQ-----------KTLNIIMGNKLQ  233 (241)
T ss_dssp             HHHHHHHHHHHTCCSSCEEEEEETTTE---EEEEESSCCH-----------HHHHHHTTC---
T ss_pred             HHHHHHHHHHcCCCCCCEEEEECCCCC---EEEecCCCCH-----------HHHHHHHHHHHH
Confidence            466778899999999999999988882   2356776432           257666665543

>3gv1_A Disulfide interchange protein; neisseria gonorrhoeae (strain 700825 / FA 1090), DSBC, structural genomics, unknown funct 2; 2.00A {Neisseria gonorrhoeae}

Probab=93.68  E-value=0.042  Score=37.18  Aligned_cols=45  Identities=16%  Similarity=0.261  Sum_probs=34.3

Q ss_pred             EeChhhHHHHhCCccCceEEEEecCCCCCeeEEEeeecCCCCCCCCCCCcHHHHHHHHHHHHc
Q 034345           15 LFQSQDVARDFGAACTPEFFLFKKDGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECVLS   77 (97)
Q Consensus        15 ~D~~q~va~a~gA~~TPe~fvld~~g~~~~~l~Y~G~IDd~~~~~~~~~t~~~L~~Ai~alLa   77 (97)
                      +|.+.++++++|.+.||++++  .+|    + ...|..+-.           .|+.+|++.+.
T Consensus        95 v~~~~~la~~~gI~gtPt~vi--~nG----~-~i~G~~~~~-----------~l~~~i~~~~~  139 (147)
T 3gv1_A           95 VAETTSLGEQFGFNGTPTLVF--PNG----R-TQSGYSPMP-----------QLEEIIRKNQQ  139 (147)
T ss_dssp             HHHHHHHHHHTTCCSSCEEEC--TTS----C-EEESCCCTT-----------HHHHHHHHTSC
T ss_pred             HHHHHHHHHHhCCCccCEEEE--ECC----E-EeeCCCCHH-----------HHHHHHHHHHH
Confidence            366789999999999999998  466    3 466875443           68888877654

>2qsi_A Putative hydrogenase expression/formation protein; HUPG, MCS SAD, structural genomics, protein structure initiative; 1.80A {Rhodopseudomonas palustris}

Probab=93.56  E-value=0.086  Score=35.92  Aligned_cols=51  Identities=18%  Similarity=0.167  Sum_probs=36.3

Q ss_pred             EEEeChhhHHHHhCCccCceEEEEecCCCCCeeEEEeeecCCCCCCCCCCCcHHHHHHHHHHHHc
Q 034345           13 ITLFQSQDVARDFGAACTPEFFLFKKDGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECVLS   77 (97)
Q Consensus        13 vL~D~~q~va~a~gA~~TPe~fvld~~g~~~~~l~Y~G~IDd~~~~~~~~~t~~~L~~Ai~alLa   77 (97)
                      |=.|+.+++|..||....|+..+| ++|+  ..=+..|..+           ...|.+.|+++++
T Consensus        73 VdvDe~~~la~~ygV~siPTlilF-kdG~--~v~~~vG~~~-----------k~~l~~~l~~~l~  123 (137)
T 2qsi_A           73 VAAEAERGLMARFGVAVCPSLAVV-QPER--TLGVIAKIQD-----------WSSYLAQIGAMLA  123 (137)
T ss_dssp             ECGGGHHHHHHHHTCCSSSEEEEE-ECCE--EEEEEESCCC-----------HHHHHHHHHHHHH
T ss_pred             EECCCCHHHHHHcCCccCCEEEEE-ECCE--EEEEEeCCCC-----------HHHHHHHHHHHhc
Confidence            335889999999999999999999 5663  2333444432           3367778887773

>1ilo_A Conserved hypothetical protein MTH895; beta-alpha-beta-alpha-beta-BETA-alpha motif, structural genomics, PSI; NMR {Methanothermobacterthermautotrophicus str} SCOP: c.47.1.1

Probab=93.55  E-value=0.11  Score=29.53  Aligned_cols=28  Identities=25%  Similarity=0.415  Sum_probs=23.4

Q ss_pred             hhhHHHHhCCccCceEEEEecCCCCCeeEEEeeec
Q 034345           18 SQDVARDFGAACTPEFFLFKKDGRRPFQLVYHGQF   52 (97)
Q Consensus        18 ~q~va~a~gA~~TPe~fvld~~g~~~~~l~Y~G~I   52 (97)
                      +.+++++||...+|++++   +|    +++++|..
T Consensus        39 ~~~~~~~~~v~~~Pt~~~---~G----~~~~~G~~   66 (77)
T 1ilo_A           39 EMDQILEAGLTALPGLAV---DG----ELKIMGRV   66 (77)
T ss_dssp             SHHHHHHHTCSSSSCEEE---TT----EEEECSSC
T ss_pred             CHHHHHHCCCCcCCEEEE---CC----EEEEcCCC
Confidence            778999999999999988   67    67677754

>2ywm_A Glutaredoxin-like protein; redox protein, structural genomics, NPPSFA, national project protein structural and functional analyses; 2.30A {Aquifex aeolicus} PDB: 2ayt_A

Probab=93.30  E-value=0.2  Score=34.49  Aligned_cols=35  Identities=14%  Similarity=0.352  Sum_probs=28.4

Q ss_pred             eChhhHHHHhCCccCceEEEEecCCCCCeeEEEeeecC
Q 034345           16 FQSQDVARDFGAACTPEFFLFKKDGRRPFQLVYHGQFD   53 (97)
Q Consensus        16 D~~q~va~a~gA~~TPe~fvld~~g~~~~~l~Y~G~ID   53 (97)
                      |+.+++++.||...+|++.+++. |.  ...+|.|..+
T Consensus        68 ~~~~~l~~~~~v~~~Ptl~~~~~-~~--~~~~~~G~~~  102 (229)
T 2ywm_A           68 FTHKEETEKYGVDRVPTIVIEGD-KD--YGIRYIGLPA  102 (229)
T ss_dssp             TTCHHHHHHTTCCBSSEEEEESS-SC--CCEEEESCCC
T ss_pred             cccHHHHHHcCCCcCcEEEEECC-Cc--ccceecCCcc
Confidence            46789999999999999999964 32  3789999743

>1qgv_A Spliceosomal protein U5-15KD; snRNP, thioredoxin, transcription; 1.40A {Homo sapiens} SCOP: c.47.1.8 PDB: 1syx_A 1pqn_A

Probab=93.29  E-value=0.081  Score=34.72  Aligned_cols=60  Identities=13%  Similarity=0.149  Sum_probs=37.4

Q ss_pred             EeChhhHHHHhCCccCceEEEEecCCCCCeeEEEeeecCCCCCCCCCCCcHHHHHHHHHHHHcC
Q 034345           15 LFQSQDVARDFGAACTPEFFLFKKDGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECVLSG   78 (97)
Q Consensus        15 ~D~~q~va~a~gA~~TPe~fvld~~g~~~~~l~Y~G~IDd~~~~~~~~~t~~~L~~Ai~alLaG   78 (97)
                      .|+..++++.||...+|++++++ +|+  ..-+..|.-++... .+...+...+.+.|+++++|
T Consensus        63 ~d~~~~~~~~~~i~~~Pt~~~~~-~G~--~v~~~~g~~~~~~~-~g~~~~~~~l~~~i~~~~~~  122 (142)
T 1qgv_A           63 ITEVPDFNKMYELYDPCTVMFFF-RNK--HIMIDLGTGNNNKI-NWAMEDKQEMVDIIETVYRG  122 (142)
T ss_dssp             TTTCCTTTTSSCSCSSCEEEEEE-TTE--EEEEECC------C-CSCCSCHHHHHHHHHHHHHH
T ss_pred             cccCHHHHHHcCCCCCCEEEEEE-CCc--EEEEecCCCCccee-eeecCcHHHHHHHHHHHHHH
Confidence            46778899999999999999995 563  12223454443321 12222356888889988876

>3iv4_A Putative oxidoreductase; APC23140, meticillin-resistant staphylococcus aureus, oxidor thioredoxin fold, structural genomics, PSI-2; HET: MSE; 1.50A {Staphylococcus aureus subsp}

Probab=93.13  E-value=0.098  Score=34.64  Aligned_cols=24  Identities=25%  Similarity=0.668  Sum_probs=20.8

Q ss_pred             HHHHhCCcc-CceEEEEecCCCCCeeEEEe
Q 034345           21 VARDFGAAC-TPEFFLFKKDGRRPFQLVYH   49 (97)
Q Consensus        21 va~a~gA~~-TPe~fvld~~g~~~~~l~Y~   49 (97)
                      +|..||.+. .|+++|+ ++|    +++|+
T Consensus        72 IA~~~~V~h~sPq~il~-k~G----~~v~~   96 (112)
T 3iv4_A           72 IAKKTNVKHESPQAFYF-VNG----EMVWN   96 (112)
T ss_dssp             HHHHHTCCCCSSEEEEE-ETT----EEEEE
T ss_pred             HHHHhCCccCCCeEEEE-ECC----EEEEE
Confidence            899999995 9999999 677    67776

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=93.06  E-value=0.072  Score=38.04  Aligned_cols=36  Identities=25%  Similarity=0.404  Sum_probs=28.7

Q ss_pred             EeChhhHHHHhCCccCceEEEEecCCCCCeeEEEeeecC
Q 034345           15 LFQSQDVARDFGAACTPEFFLFKKDGRRPFQLVYHGQFD   53 (97)
Q Consensus        15 ~D~~q~va~a~gA~~TPe~fvld~~g~~~~~l~Y~G~ID   53 (97)
                      .|+..++++.||...+|+++++ ++|+  ..-+|.|..+
T Consensus        66 ~~~~~~~~~~~~v~~~Pt~~~~-~~G~--~~~~~~g~~~  101 (287)
T 3qou_A           66 CDAEQMIAAQFGLRAIPTVYLF-QNGQ--PVDGFQGPQP  101 (287)
T ss_dssp             TTTCHHHHHTTTCCSSSEEEEE-ETTE--EEEEEESCCC
T ss_pred             CccCHHHHHHcCCCCCCeEEEE-ECCE--EEEEeeCCCC
Confidence            4677899999999999999999 5774  3456888754

>3f4s_A Alpha-DSBA1, putative uncharacterized protein; thioredoxin-fold, oxidoreductase; HET: PGE; 1.55A {Wolbachia pipientis} PDB: 3f4r_A* 3f4t_A*

Probab=93.03  E-value=0.055  Score=38.85  Aligned_cols=57  Identities=16%  Similarity=0.196  Sum_probs=39.0

Q ss_pred             hhhHHHH-hCCccCceEEEEecCCCCCeeEEEeeecCCCCCCCCCCCcHHHHHHHHHHHHcCCCCC
Q 034345           18 SQDVARD-FGAACTPEFFLFKKDGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECVLSGQPVS   82 (97)
Q Consensus        18 ~q~va~a-~gA~~TPe~fvld~~g~~~~~l~Y~G~IDd~~~~~~~~~t~~~L~~Ai~alLaG~~v~   82 (97)
                      +.+.|++ +|.+.||.+||.+.+|+     .+.|+.+-..+ +  ..+-..++++|+.+++...|.
T Consensus       159 ~~~~a~~~~GV~GtPtfvv~~~nG~-----~~~Ga~~~~~~-G--~~~~e~l~~~I~~~l~~~~~~  216 (226)
T 3f4s_A          159 DKSLAINKLGITAVPIFFIKLNDDK-----SYIEHNKVKHG-G--YKELKYFTNVIDKLYGKAIVK  216 (226)
T ss_dssp             HHHHHHHHHCCCSSCEEEEEECCTT-----CCCCGGGGEEE-S--CCCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHcCCCcCCEEEEEcCCCE-----EeeCCCCcccc-c--ccCHHHHHHHHHHHHhcCCcc
Confidence            4567788 99999999999998883     35677651100 0  112457999999998765443

>2f51_A Thioredoxin; electron transport; 1.90A {Trichomonas vaginalis}

Probab=92.92  E-value=0.061  Score=33.79  Aligned_cols=47  Identities=21%  Similarity=0.308  Sum_probs=32.6

Q ss_pred             EeChhhHHHHhCCccCceEEEEecC---CCCCeeEEEeeecCCCCCCCCCCCcHHHHHHHHHHH
Q 034345           15 LFQSQDVARDFGAACTPEFFLFKKD---GRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECV   75 (97)
Q Consensus        15 ~D~~q~va~a~gA~~TPe~fvld~~---g~~~~~l~Y~G~IDd~~~~~~~~~t~~~L~~Ai~al   75 (97)
                      .|+..++++.||...+|++++++.+   |+  ..-++.|..            ...|+.+|+..
T Consensus        62 ~~~~~~~~~~~~i~~~Pt~~~~~~~~~~G~--~~~~~~G~~------------~~~l~~~~~~~  111 (118)
T 2f51_A           62 VDKNGNAADAYGVSSIPALFFVKKEGNEIK--TLDQFVGAD------------VSRIKADIEKF  111 (118)
T ss_dssp             TTTCHHHHHHTTCCSSSEEEEEEEETTEEE--EEEEEESCC------------HHHHHHHHHHH
T ss_pred             CCCCHHHHHhcCCCCCCEEEEEeCCCCcce--EEEeecCCC------------HHHHHHHHHHh
Confidence            4667889999999999999999873   42  233455542            22477776654

>3zzx_A Thioredoxin; oxidoreductase; 1.88A {Litopenaeus vannamei}

Probab=92.83  E-value=0.1  Score=32.83  Aligned_cols=34  Identities=29%  Similarity=0.545  Sum_probs=25.7

Q ss_pred             EeChhhHHHHhCCccCceEEEEecCCCCCeeEEEeee
Q 034345           15 LFQSQDVARDFGAACTPEFFLFKKDGRRPFQLVYHGQ   51 (97)
Q Consensus        15 ~D~~q~va~a~gA~~TPe~fvld~~g~~~~~l~Y~G~   51 (97)
                      .|+..++++.||....|+++++ ++|+  ..-++.|+
T Consensus        59 ~d~~~~l~~~~~V~~~PT~~~~-~~G~--~v~~~~G~   92 (105)
T 3zzx_A           59 VDECEDIAQDNQIACMPTFLFM-KNGQ--KLDSLSGA   92 (105)
T ss_dssp             TTTCHHHHHHTTCCBSSEEEEE-ETTE--EEEEEESC
T ss_pred             cccCHHHHHHcCCCeecEEEEE-ECCE--EEEEEeCc
Confidence            4678899999999999987777 6774  23455663

>1sen_A Thioredoxin-like protein P19; endoplasmic reticulum, RP19, structural genomics, PSI, protein structure initiative; 1.20A {Homo sapiens} SCOP: c.47.1.1 PDB: 2k8v_A

Probab=92.68  E-value=0.14  Score=34.34  Aligned_cols=63  Identities=10%  Similarity=0.210  Sum_probs=39.1

Q ss_pred             EEEeChhh-HHHHhCC--ccCceEEEEecCCCCCeeEEEeeecCCCCCCCCCCCcHHHHHHHHHHHHcC
Q 034345           13 ITLFQSQD-VARDFGA--ACTPEFFLFKKDGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECVLSG   78 (97)
Q Consensus        13 vL~D~~q~-va~a~gA--~~TPe~fvld~~g~~~~~l~Y~G~IDd~~~~~~~~~t~~~L~~Ai~alLaG   78 (97)
                      |=.|.... +++.|+.  ..+|+++++|++|+  +.-++.|........ -...+...|.+.|+.++..
T Consensus        84 v~~d~~~~~~~~~~~~~~~~~Pt~~~~d~~G~--~~~~~~G~~~~~~~~-~~~~~~~~l~~~l~~~l~~  149 (164)
T 1sen_A           84 VNLEDEEEPKDEDFSPDGGYIPRILFLDPSGK--VHPEIINENGNPSYK-YFYVSAEQVVQGMKEAQER  149 (164)
T ss_dssp             EEEEGGGSCSCGGGCTTCSCSSEEEEECTTSC--BCTTCCCTTSCTTST-TCCCSHHHHHHHHHHHHHH
T ss_pred             EEecCCchHHHHHhcccCCcCCeEEEECCCCC--EEEEEeCCCCccchh-cccCCHHHHHHHHHHHHHh
Confidence            44566666 7889998  56999999999995  233456653322100 0123456777777777654

>3gha_A Disulfide bond formation protein D; BDBD, DSBA-like, TRX-like, oxidoreductase, competence, redox-active center; 1.40A {Bacillus subtilis} PDB: 3eu4_A 3gh9_A 3eu3_A

Probab=92.62  E-value=0.069  Score=37.37  Aligned_cols=44  Identities=18%  Similarity=0.371  Sum_probs=33.0

Q ss_pred             ChhhHHHHhCCccCceEEEEecCCCCCeeEEEeeecCCCCCCCCCCCcHHHHHHHHHHHHcCC
Q 034345           17 QSQDVARDFGAACTPEFFLFKKDGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECVLSGQ   79 (97)
Q Consensus        17 ~~q~va~a~gA~~TPe~fvld~~g~~~~~l~Y~G~IDd~~~~~~~~~t~~~L~~Ai~alLaG~   79 (97)
                      .+.+.++++|...||.+||   +|    +. +.|+.           +-..|+.+|+++++++
T Consensus       151 ~~~~~a~~~gV~gtPtfvv---nG----~~-~~G~~-----------~~e~l~~~i~~~~~~~  194 (202)
T 3gha_A          151 KDSDLNQKMNIQATPTIYV---ND----KV-IKNFA-----------DYDEIKETIEKELKGK  194 (202)
T ss_dssp             HHHHHHHHTTCCSSCEEEE---TT----EE-CSCTT-----------CHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHcCCCcCCEEEE---CC----EE-ecCCC-----------CHHHHHHHHHHHHHhh
Confidence            3456789999999999998   66    33 45542           2447999999998875

>3gyk_A 27KDA outer membrane protein; APC61738.2, silicibacter pomeroyi DSS-3, thioredoxin-like, oxidoreductase, structural genomics, PSI-2; HET: MSE; 1.76A {Silicibacter pomeroyi}

Probab=92.56  E-value=0.071  Score=35.40  Aligned_cols=44  Identities=20%  Similarity=0.354  Sum_probs=32.3

Q ss_pred             EeChhhHHHHhCCccCceEEEEecCCCCCeeEEEeeecCCCCCCCCCCCcHHHHHHHHHHHHc
Q 034345           15 LFQSQDVARDFGAACTPEFFLFKKDGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECVLS   77 (97)
Q Consensus        15 ~D~~q~va~a~gA~~TPe~fvld~~g~~~~~l~Y~G~IDd~~~~~~~~~t~~~L~~Ai~alLa   77 (97)
                      ++.+.+.++++|...||++||   +|    + .+.|..+           ...|+++|+++++
T Consensus       130 v~~~~~~a~~~gv~gtPt~~i---~g----~-~~~G~~~-----------~~~l~~~i~~~l~  173 (175)
T 3gyk_A          130 IAQSMALAQKLGFNGTPSFVV---ED----A-LVPGFVE-----------QSQLQDAVDRARK  173 (175)
T ss_dssp             HHHHHHHHHHHTCCSSSEEEE---TT----E-EECSCCC-----------HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCccCCEEEE---CC----E-EeeCCCC-----------HHHHHHHHHHHHh
Confidence            466778999999999998887   55    3 4567532           3378888888764

>1ttz_A Conserved hypothetical protein; structural genomics, unknown function, PSI, protein structure initiative; 2.11A {Xanthomonas campestris} SCOP: c.47.1.1 PDB: 1xpv_A

Probab=92.54  E-value=0.047  Score=33.84  Aligned_cols=47  Identities=15%  Similarity=0.210  Sum_probs=30.9

Q ss_pred             EEEeChhhHHHHhCCccCceEEEEecCCCCCeeEEEeeecCCCCCCCCCCCcHHHHHHHHHHHHcC
Q 034345           13 ITLFQSQDVARDFGAACTPEFFLFKKDGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECVLSG   78 (97)
Q Consensus        13 vL~D~~q~va~a~gA~~TPe~fvld~~g~~~~~l~Y~G~IDd~~~~~~~~~t~~~L~~Ai~alLaG   78 (97)
                      |=+|++.+++..||.. .|.+++  .+|+    ... |.+|           ...|+++|+..+..
T Consensus        32 vdid~~~~l~~~~g~~-vPtl~~--~~G~----~v~-g~~~-----------~~~L~~~l~~~~~~   78 (87)
T 1ttz_A           32 VFIDDDAALESAYGLR-VPVLRD--PMGR----ELD-WPFD-----------APRLRAWLDAAPHA   78 (87)
T ss_dssp             EECTTCHHHHHHHTTT-CSEEEC--TTCC----EEE-SCCC-----------HHHHHHHHHTCC--
T ss_pred             EECCCCHHHHHHhCCC-cCeEEE--ECCE----EEe-CCCC-----------HHHHHHHHHHHHHH
Confidence            3345778999999997 999888  6673    333 6543           23677777665543

>2hls_A Protein disulfide oxidoreductase; thioredoxin fold; 1.93A {Aeropyrum pernix}

Probab=92.44  E-value=0.16  Score=36.23  Aligned_cols=44  Identities=23%  Similarity=0.428  Sum_probs=34.1

Q ss_pred             ChhhHHHHhCCccCceEEEEecCCCCCeeEEEeeecCCCCCCCCCCCcHHHHHHHHHHHHcC
Q 034345           17 QSQDVARDFGAACTPEFFLFKKDGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECVLSG   78 (97)
Q Consensus        17 ~~q~va~a~gA~~TPe~fvld~~g~~~~~l~Y~G~IDd~~~~~~~~~t~~~L~~Ai~alLaG   78 (97)
                      ..+++++.||...+|++|+   +|    +++|.|..+           ...+.+.|+..+..
T Consensus       184 ~~~~~~~~~~V~~vPt~~i---~G----~~~~~G~~~-----------~~~l~~~l~~~~~~  227 (243)
T 2hls_A          184 ENPDIADKYGVMSVPSIAI---NG----YLVFVGVPY-----------EEDFLDYVKSAAEG  227 (243)
T ss_dssp             TCHHHHHHTTCCSSSEEEE---TT----EEEEESCCC-----------HHHHHHHHHHHHTT
T ss_pred             cCHHHHHHcCCeeeCeEEE---CC----EEEEeCCCC-----------HHHHHHHHHHHhhc
Confidence            5578999999999999998   67    567999753           33677778777653

>3feu_A Putative lipoprotein; alpha-beta structure, structural genomics, PSI-2, protein ST initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.76A {Vibrio fischeri} SCOP: c.47.1.0

Probab=92.00  E-value=0.12  Score=35.50  Aligned_cols=46  Identities=20%  Similarity=0.428  Sum_probs=33.0

Q ss_pred             eChhhHHHHhCCccCceEEEEecCCCCCeeEEEeeecCCCCCCCCCCCcHHHHHHHHHHHHc
Q 034345           16 FQSQDVARDFGAACTPEFFLFKKDGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECVLS   77 (97)
Q Consensus        16 D~~q~va~a~gA~~TPe~fvld~~g~~~~~l~Y~G~IDd~~~~~~~~~t~~~L~~Ai~alLa   77 (97)
                      ..+.+.|+++|.+.||.++|   +|+  ..+.+.|+.+           ...+.++|+.+++
T Consensus       139 ~~~~~~a~~~gv~GtPtfvv---ng~--~~v~~~Ga~~-----------~e~~~~~i~~ll~  184 (185)
T 3feu_A          139 DNAKMLSEKSGISSVPTFVV---NGK--YNVLIGGHDD-----------PKQIADTIRYLLE  184 (185)
T ss_dssp             HHHHHHHHHHTCCSSSEEEE---TTT--EEECGGGCSS-----------HHHHHHHHHHHHT
T ss_pred             HHHHHHHHHcCCCccCEEEE---CCE--EEEecCCCCC-----------HHHHHHHHHHHHh
Confidence            34567789999999999998   553  2344577643           3368889998875

>3idv_A Protein disulfide-isomerase A4; thioredoxin-like fold, disulfide bond, endoplasmic reticulum isomerase, redox-active center; 1.95A {Homo sapiens} PDB: 2dj2_A

Probab=91.99  E-value=0.12  Score=35.40  Aligned_cols=47  Identities=23%  Similarity=0.310  Sum_probs=34.4

Q ss_pred             EeChhhHHHHhCCccCceEEEEecCCCCCeeEEEeeecCCCCCCCCCCCcHHHHHHHHHHHH
Q 034345           15 LFQSQDVARDFGAACTPEFFLFKKDGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECVL   76 (97)
Q Consensus        15 ~D~~q~va~a~gA~~TPe~fvld~~g~~~~~l~Y~G~IDd~~~~~~~~~t~~~L~~Ai~alL   76 (97)
                      .|...++++.||...+|++++++. |+   .+.|.|..+           ...|.+.|...+
T Consensus       190 ~~~~~~l~~~~~v~~~Pt~~~~~~-g~---~~~~~g~~~-----------~~~l~~~l~~~~  236 (241)
T 3idv_A          190 ATAETDLAKRFDVSGYPTLKIFRK-GR---PYDYNGPRE-----------KYGIVDYMIEQS  236 (241)
T ss_dssp             TTTCHHHHHHTTCCSSSEEEEEET-TE---EEECCSCCS-----------HHHHHHHHHHHT
T ss_pred             CCCCHHHHHHcCCcccCEEEEEEC-Ce---EEEecCCCC-----------HHHHHHHHHhhh
Confidence            356778999999999999999975 53   667877532           346777776654

>2znm_A Thiol:disulfide interchange protein DSBA; thioredoxin fold, DSBA-like, oxidoreductase; 2.30A {Neisseria meningitidis serogroup B} PDB: 3dvx_A

Probab=91.73  E-value=0.071  Score=36.01  Aligned_cols=45  Identities=11%  Similarity=0.090  Sum_probs=29.1

Q ss_pred             EeChhhHHHHhCCccCceEEEEecCCCCCeeEEEeeecCCCCCCCCCCCcHHHHHHHHHHHHc
Q 034345           15 LFQSQDVARDFGAACTPEFFLFKKDGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECVLS   77 (97)
Q Consensus        15 ~D~~q~va~a~gA~~TPe~fvld~~g~~~~~l~Y~G~IDd~~~~~~~~~t~~~L~~Ai~alLa   77 (97)
                      ++.+.+.++.+|...||+ |++  +|    +....|..           +...|.++|+.+++
T Consensus       136 v~~~~~~a~~~gv~gtPt-~vi--ng----~~~~~g~~-----------~~~~l~~~i~~~l~  180 (195)
T 2znm_A          136 ALKMQKLTEQYRIDSTPT-VIV--GG----KYRVIFNN-----------GFDGGVHTIKELVA  180 (195)
T ss_dssp             HHHHHHHHHHTTCCSSSE-EEE--TT----TEEECCCS-----------HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCCCCCe-EEE--CC----EEEEcCCC-----------CHHHHHHHHHHHHH
Confidence            455678899999999999 555  45    33344541           23356666666654

>2k8s_A Thioredoxin; dimer, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Nitrosomonas europaea}

Probab=91.40  E-value=0.15  Score=29.83  Aligned_cols=30  Identities=17%  Similarity=0.150  Sum_probs=24.1

Q ss_pred             ChhhHHHHhCCccCceEEEEecCCCCCeeEEEeeecC
Q 034345           17 QSQDVARDFGAACTPEFFLFKKDGRRPFQLVYHGQFD   53 (97)
Q Consensus        17 ~~q~va~a~gA~~TPe~fvld~~g~~~~~l~Y~G~ID   53 (97)
                      +..++++.||...+|.+|+   +|    ++.+.|...
T Consensus        43 ~~~~~~~~~gv~~vPt~~i---~g----~~~~~G~~~   72 (80)
T 2k8s_A           43 ARIAEAEKAGVKSVPALVI---DG----AAFHINFGA   72 (80)
T ss_dssp             STHHHHHHHTCCEEEEEEE---TT----EEEEEEEEE
T ss_pred             hhHHHHHHcCCCcCCEEEE---CC----EEEEeccCc
Confidence            3578899999999999887   66    677888753

>1zma_A Bacterocin transport accessory protein; alpha-beta-alpha-sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.25A {Streptococcus pneumoniae} SCOP: c.47.1.1

Probab=91.15  E-value=0.12  Score=31.89  Aligned_cols=30  Identities=20%  Similarity=0.445  Sum_probs=22.5

Q ss_pred             hhHHHHhCCccCceEEEEecCCCCCeeEEEeee
Q 034345           19 QDVARDFGAACTPEFFLFKKDGRRPFQLVYHGQ   51 (97)
Q Consensus        19 q~va~a~gA~~TPe~fvld~~g~~~~~l~Y~G~   51 (97)
                      +++++.||...+|++++++ +|+  ...++.|.
T Consensus        77 ~~~~~~~~i~~~Pt~~~~~-~G~--~~~~~~G~  106 (118)
T 1zma_A           77 QAFRSRYGIPTVPGFVHIT-DGQ--INVRCDSS  106 (118)
T ss_dssp             HHHHHHHTCCSSCEEEEEE-TTE--EEEECCTT
T ss_pred             HHHHHHcCCCCCCeEEEEE-CCE--EEEEecCC
Confidence            5788999999999999995 663  24455553

>2dlx_A UBX domain-containing protein 7; UAS domain, protein KIAA0794, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: c.47.1.24

Probab=91.13  E-value=0.21  Score=34.04  Aligned_cols=24  Identities=13%  Similarity=0.148  Sum_probs=20.9

Q ss_pred             hhhHHHHhCCccCceEEEEecC-CC
Q 034345           18 SQDVARDFGAACTPEFFLFKKD-GR   41 (97)
Q Consensus        18 ~q~va~a~gA~~TPe~fvld~~-g~   41 (97)
                      ..++++.|++..+|++++||++ |+
T Consensus        90 ~~~l~~~y~v~~~P~~~fld~~~G~  114 (153)
T 2dlx_A           90 GQRYIQFYKLGDFPYVSILDPRTGQ  114 (153)
T ss_dssp             HHHHHHHHTCCSSSEEEEECTTTCC
T ss_pred             HHHHHHHcCCCCCCEEEEEeCCCCc
Confidence            3568899999999999999998 64

>3h93_A Thiol:disulfide interchange protein DSBA; disulfide bond, redox-active center, transcription regulator; HET: MSE GOL; 1.50A {Pseudomonas aeruginosa PAO1} SCOP: c.47.1.0

Probab=91.08  E-value=0.1  Score=35.32  Aligned_cols=46  Identities=7%  Similarity=0.208  Sum_probs=31.3

Q ss_pred             eChhhHHHHhCCccCceEEEEecCCCCCeeEEEeeecCCCCCCCCCCCcHHHHHHHHHHHHc
Q 034345           16 FQSQDVARDFGAACTPEFFLFKKDGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECVLS   77 (97)
Q Consensus        16 D~~q~va~a~gA~~TPe~fvld~~g~~~~~l~Y~G~IDd~~~~~~~~~t~~~L~~Ai~alLa   77 (97)
                      +.+.+.++++|...||.++|   +|+  ..+...|..+           ...|.++|+.+++
T Consensus       139 ~~~~~~a~~~gv~gtPt~~v---ng~--~~~~~~G~~~-----------~e~l~~~i~~l~~  184 (192)
T 3h93_A          139 EKAKKLAMAYQVTGVPTMVV---NGK--YRFDIGSAGG-----------PEETLKLADYLIE  184 (192)
T ss_dssp             HHHHHHHHHHTCCSSSEEEE---TTT--EEEEHHHHTS-----------HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhCCCCCCeEEE---CCE--EEecccccCC-----------HHHHHHHHHHHHH
Confidence            45567889999999998877   563  1233337643           2368888888775

>2dj0_A Thioredoxin-related transmembrane protein 2; AVLA237, CGI-31 protein, TXNDC14, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=91.02  E-value=0.28  Score=31.18  Aligned_cols=37  Identities=16%  Similarity=0.225  Sum_probs=29.3

Q ss_pred             eChhhHHHHhCCc------cCceEEEEecCCCCCeeEEEeeecCCC
Q 034345           16 FQSQDVARDFGAA------CTPEFFLFKKDGRRPFQLVYHGQFDDS   55 (97)
Q Consensus        16 D~~q~va~a~gA~------~TPe~fvld~~g~~~~~l~Y~G~IDd~   55 (97)
                      |+..++++.|+..      .+|+++++ ++|+  ..-++.|..+..
T Consensus        68 ~~~~~~~~~~~v~~~~~~~~~Pt~~~~-~~G~--~~~~~~G~~~~~  110 (137)
T 2dj0_A           68 GRYTDVSTRYKVSTSPLTKQLPTLILF-QGGK--EAMRRPQIDKKG  110 (137)
T ss_dssp             TTCHHHHHHTTCCCCSSSSCSSEEEEE-SSSS--EEEEESCBCSSS
T ss_pred             ccCHHHHHHccCcccCCcCCCCEEEEE-ECCE--EEEEecCcCchH
Confidence            5677899999998      99999999 5674  355688887654

>4dvc_A Thiol:disulfide interchange protein DSBA; pilus assembly, oxidoreductase, thioredoxin fold, D disulfide bond, DSBB; HET: DMS; 1.20A {Vibrio cholerae} PDB: 2ijy_A 1bed_A

Probab=90.90  E-value=0.19  Score=33.11  Aligned_cols=46  Identities=15%  Similarity=0.208  Sum_probs=29.8

Q ss_pred             ChhhHHHHhCCccCceEEEEecCCCCCeeEEEeeecCCCCCCCCCCCcHHHHHHHHHHHHcC
Q 034345           17 QSQDVARDFGAACTPEFFLFKKDGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECVLSG   78 (97)
Q Consensus        17 ~~q~va~a~gA~~TPe~fvld~~g~~~~~l~Y~G~IDd~~~~~~~~~t~~~L~~Ai~alLaG   78 (97)
                      .+.+.|+.+|.+.||.+||   +|+    ..=.|. + .       .+-..+.+.|+.||+-
T Consensus       138 ~~~~~a~~~gv~gTPtfiI---NGk----y~v~~~-~-~-------~s~e~~~~~i~~Ll~k  183 (184)
T 4dvc_A          138 RFDKQFQDSGLTGVPAVVV---NNR----YLVQGQ-S-A-------KSLDEYFDLVNYLLTL  183 (184)
T ss_dssp             HHHHHHHHHTCCSSSEEEE---TTT----EEECGG-G-C-------SSHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHcCCCcCCEEEE---CCE----EeeCCc-C-C-------CCHHHHHHHHHHHHhC
Confidence            4457889999999998777   663    211121 1 1       1244688889988863

>2in3_A Hypothetical protein; DSBA family, FRNE-like subfamily, disulfide isomerase, struc genomics, PSI-2, protein structure initiative; 1.85A {Nitrosomonas europaea}

Probab=90.84  E-value=0.15  Score=34.96  Aligned_cols=51  Identities=12%  Similarity=0.126  Sum_probs=34.9

Q ss_pred             eChhhHHHHhCCccCceEEEEecCCCCCeeEEEeeecCCCCCCCCCCCcHHHHHHHHHHHHcCCC
Q 034345           16 FQSQDVARDFGAACTPEFFLFKKDGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECVLSGQP   80 (97)
Q Consensus        16 D~~q~va~a~gA~~TPe~fvld~~g~~~~~l~Y~G~IDd~~~~~~~~~t~~~L~~Ai~alLaG~~   80 (97)
                      +.+.+.|+.+|...||+++|+. +|+  ....+.|..           +...+.++|+.+++.-+
T Consensus       163 ~~~~~~a~~~gv~g~Pt~~i~~-~G~--~~~~~~G~~-----------~~~~l~~~l~~~~~~~~  213 (216)
T 2in3_A          163 LAGFQRVAQWGISGFPALVVES-GTD--RYLITTGYR-----------PIEALRQLLDTWLQQHG  213 (216)
T ss_dssp             HHHHHHHHHTTCCSSSEEEEEE-TTE--EEEEESSCC-----------CHHHHHHHHHHHHHHCC
T ss_pred             HHHHHHHHHcCCcccceEEEEE-CCE--EEEeccCCC-----------CHHHHHHHHHHHHHhcc
Confidence            3456778999999999988764 552  122566652           13478899998887533

>2ywm_A Glutaredoxin-like protein; redox protein, structural genomics, NPPSFA, national project protein structural and functional analyses; 2.30A {Aquifex aeolicus} PDB: 2ayt_A

Probab=90.66  E-value=0.15  Score=35.15  Aligned_cols=46  Identities=17%  Similarity=0.227  Sum_probs=32.6

Q ss_pred             EeChhhHHHHhCCccCceEEEEecCCCCCeeEEEeeecCCCCCCCCCCCcHHHHHHHHHHHHc
Q 034345           15 LFQSQDVARDFGAACTPEFFLFKKDGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECVLS   77 (97)
Q Consensus        15 ~D~~q~va~a~gA~~TPe~fvld~~g~~~~~l~Y~G~IDd~~~~~~~~~t~~~L~~Ai~alLa   77 (97)
                      .|..+++++.||...+|++++   +|+   ..+|.|..+.           ..|.+.|+.++.
T Consensus       175 ~~~~~~l~~~~~v~~~Pt~~~---~G~---~~~~~G~~~~-----------~~l~~~l~~~~~  220 (229)
T 2ywm_A          175 ASENQDLAEQFQVVGVPKIVI---NKG---VAEFVGAQPE-----------NAFLGYIMAVYE  220 (229)
T ss_dssp             GGGCHHHHHHTTCCSSSEEEE---GGG---TEEEESCCCH-----------HHHHHHHHHHHH
T ss_pred             CCCCHHHHHHcCCcccCEEEE---CCE---EEEeeCCCCH-----------HHHHHHHHHHhh
Confidence            346678999999999999988   563   4568886432           256666665553

>3t58_A Sulfhydryl oxidase 1; oxidoreductase; HET: FAD; 2.40A {Mus musculus} PDB: 3t59_A*

Probab=90.35  E-value=0.41  Score=38.45  Aligned_cols=52  Identities=17%  Similarity=0.248  Sum_probs=38.9

Q ss_pred             eChhhHHHHhCCccCceEEEEec---CCCCCeeEEEeeecCCCCCCCCCCCcHHHHHHHHHHHHcCCC
Q 034345           16 FQSQDVARDFGAACTPEFFLFKK---DGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECVLSGQP   80 (97)
Q Consensus        16 D~~q~va~a~gA~~TPe~fvld~---~g~~~~~l~Y~G~IDd~~~~~~~~~t~~~L~~Ai~alLaG~~   80 (97)
                      |+.+++++.||...+|+++++++   +|.+  ...+.|..           +...|++.|+.++....
T Consensus        76 d~~~~l~~~~~V~~~PTl~~f~~g~~~G~~--~~~~~g~~-----------~~~~L~~~l~~~l~~~~  130 (519)
T 3t58_A           76 ETNSAVCREFNIAGFPTVRFFQAFTKNGSG--ATLPGAGA-----------NVQTLRMRLIDALESHR  130 (519)
T ss_dssp             GGGHHHHHHTTCCSBSEEEEECTTCCSCCC--EEECCSSC-----------CHHHHHHHHHHHHTTCC
T ss_pred             cccHHHHHHcCCcccCEEEEEcCcccCCCc--eeEecCCC-----------CHHHHHHHHHHHHhhcc
Confidence            44789999999999999999997   5542  45555542           34478888888887644

>2av4_A Thioredoxin-like protein 4A (DIM1); U5 snRNP-SPECIFIC 15KD prote structural genomics, structural genomics consortium, SGC, U function; 1.73A {Plasmodium yoelii}

Probab=90.03  E-value=0.31  Score=34.24  Aligned_cols=61  Identities=10%  Similarity=0.174  Sum_probs=40.9

Q ss_pred             EEEeChhhHHHHhCCccCceEEEEecCCCCCeeE-EEeeecCCCCCCCCCCCcHHHHHHHHHHHHcC
Q 034345           13 ITLFQSQDVARDFGAACTPEFFLFKKDGRRPFQL-VYHGQFDDSRPSNNLPVTGRDIRLAIECVLSG   78 (97)
Q Consensus        13 vL~D~~q~va~a~gA~~TPe~fvld~~g~~~~~l-~Y~G~IDd~~~~~~~~~t~~~L~~Ai~alLaG   78 (97)
                      |=.|+.+++|..||....|++.+|- +|+   .+ .=.|.-|++. -.+...+...|.+.|+.++.|
T Consensus        79 VDVDe~~e~a~~y~V~siPT~~fFk-~G~---~v~vd~Gtgd~~k-~vGa~~~k~~l~~~ie~~~r~  140 (160)
T 2av4_A           79 VDITEVPDFNTMYELYDPVSVMFFY-RNK---HMMIDLGTGNNNK-INWPMNNKQEFIDIVETIFRG  140 (160)
T ss_dssp             EETTTCCTTTTTTTCCSSEEEEEEE-TTE---EEEEECSSSCCSC-BCSCCCCHHHHHHHHHHHHHH
T ss_pred             EECCCCHHHHHHcCCCCCCEEEEEE-CCE---EEEEecCCCCcCe-EEeecCCHHHHHHHHHHHHHH
Confidence            4458999999999999999998885 442   33 2556666663 223222355777777776644

>2rem_A Disulfide oxidoreductase; disulfide oxidoreductase, DSBA, thioredoxin fold, redox- active center; 1.90A {Xylella fastidiosa}

Probab=90.00  E-value=0.16  Score=34.11  Aligned_cols=45  Identities=18%  Similarity=0.250  Sum_probs=30.5

Q ss_pred             EeChhhHHHHhCCccCceEEEEecCCCCCeeEEEeeecCCCCCCCCCCCcHHHHHHHHHHHHcC
Q 034345           15 LFQSQDVARDFGAACTPEFFLFKKDGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECVLSG   78 (97)
Q Consensus        15 ~D~~q~va~a~gA~~TPe~fvld~~g~~~~~l~Y~G~IDd~~~~~~~~~t~~~L~~Ai~alLaG   78 (97)
                      ++.+.+.++++|...||+ |++  +|+    ..-.|.            +...+..+|+.+++.
T Consensus       141 v~~~~~~a~~~gv~gtPt-~vi--ng~----~~~~g~------------~~~~l~~~i~~~~~~  185 (193)
T 2rem_A          141 FQAARAYALKVRPVGTPT-IVV--NGR----YMVTGH------------DFEDTLRITDYLVSR  185 (193)
T ss_dssp             HHHHHHHHHHHCCSSSSE-EEE--TTT----EEECCS------------SHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCCCCCe-EEE--CCE----EEecCC------------CHHHHHHHHHHHHHH
Confidence            355678899999999999 555  452    222443            234788888888754

>3ph9_A Anterior gradient protein 3 homolog; thioredoxin fold, protein disulfide isomerase, endoplasmic R isomerase; 1.83A {Homo sapiens} SCOP: c.47.1.0 PDB: 2lns_A 2lnt_A

Probab=89.86  E-value=0.36  Score=32.67  Aligned_cols=42  Identities=10%  Similarity=0.257  Sum_probs=29.6

Q ss_pred             eEEEe-ChhhHHHHhCCccCceEEEEecCCCCCeeEEEeeecCCC
Q 034345           12 LITLF-QSQDVARDFGAACTPEFFLFKKDGRRPFQLVYHGQFDDS   55 (97)
Q Consensus        12 pvL~D-~~q~va~a~gA~~TPe~fvld~~g~~~~~l~Y~G~IDd~   55 (97)
                      .|-+| +..+++..|+...+|+++++|++|+  ..-+..|...+.
T Consensus        82 ~V~vD~e~~~~~~~~~v~~~PT~~f~~~~G~--~v~~~~G~~~~~  124 (151)
T 3ph9_A           82 MLNLMHETTDKNLSPDGQYVPRIMFVDPSLT--VRADIAGRYSNR  124 (151)
T ss_dssp             EEEESSCCSCGGGCTTCCCSSEEEEECTTSC--BCTTCCCSCTTS
T ss_pred             EEEecCCchhhHhhcCCCCCCEEEEECCCCC--EEEEEeCCcCCc
Confidence            34454 3457889999999999999999995  233445664433

>3dml_A Putative uncharacterized protein; thioredoxin, oxidoreductase, sulfur oxidation, thiol- disulfide oxidoreductase; HET: MSE; 1.90A {Paracoccus denitrificans} PDB: 3d4t_A*

Probab=89.69  E-value=0.1  Score=34.50  Aligned_cols=46  Identities=11%  Similarity=0.015  Sum_probs=32.7

Q ss_pred             hhHHHHhCCccCceEEEEecCCCCCeeEEEeeecCCCCCCCCCCCcHHHHHHHHHHHHcC
Q 034345           19 QDVARDFGAACTPEFFLFKKDGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECVLSG   78 (97)
Q Consensus        19 q~va~a~gA~~TPe~fvld~~g~~~~~l~Y~G~IDd~~~~~~~~~t~~~L~~Ai~alLaG   78 (97)
                      +.+|..|+...||++++|+ +|+  -.-+..|.+.           ...+...|+.++.+
T Consensus        66 ~~la~~~~V~g~PT~i~f~-~G~--ev~Ri~G~~~-----------~~~f~~~L~~~l~~  111 (116)
T 3dml_A           66 PGLELARPVTFTPTFVLMA-GDV--ESGRLEGYPG-----------EDFFWPMLARLIGQ  111 (116)
T ss_dssp             TTCBCSSCCCSSSEEEEEE-TTE--EEEEEECCCC-----------HHHHHHHHHHHHHH
T ss_pred             hhHHHHCCCCCCCEEEEEE-CCE--EEeeecCCCC-----------HHHHHHHHHHHHhh
Confidence            4688999999999999999 885  2445555432           23566777777654

>1a8l_A Protein disulfide oxidoreductase; PDI, thioredoxin fold; 1.90A {Pyrococcus furiosus} SCOP: c.47.1.2 c.47.1.2 PDB: 1j08_A

Probab=89.41  E-value=0.87  Score=30.95  Aligned_cols=34  Identities=18%  Similarity=0.411  Sum_probs=26.1

Q ss_pred             hhhHHHHhCCccCceEEEEecCCCCCeeEEEeeecC
Q 034345           18 SQDVARDFGAACTPEFFLFKKDGRRPFQLVYHGQFD   53 (97)
Q Consensus        18 ~q~va~a~gA~~TPe~fvld~~g~~~~~l~Y~G~ID   53 (97)
                      ..++++.||...+|+++++.. |.. ...+|.|..+
T Consensus        67 ~~~~~~~~~v~~~Pt~~~~~~-g~~-~~~~~~G~~~  100 (226)
T 1a8l_A           67 GKELAKRYRIDRAPATTITQD-GKD-FGVRYFGLPA  100 (226)
T ss_dssp             HHHHHHHTTCCSSSEEEEEET-TBC-CSEEEESCCC
T ss_pred             cHHHHHHcCCCcCceEEEEcC-Cce-eeEEEeccCc
Confidence            678999999999999999943 321 1379999754

>3bci_A Disulfide bond protein A; thiol-disulfide oxidoreductase, redox protein, protein folding, redox active centre; 1.81A {Staphylococcus aureus} PDB: 3bd2_A 3bck_A

Probab=89.16  E-value=0.2  Score=33.73  Aligned_cols=44  Identities=14%  Similarity=0.255  Sum_probs=27.7

Q ss_pred             ChhhHHHHhCCccCceEEEEecCCCCCeeEEEeeecCCCCCCCCCCCcHHHHHHHHHHHHcCC
Q 034345           17 QSQDVARDFGAACTPEFFLFKKDGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECVLSGQ   79 (97)
Q Consensus        17 ~~q~va~a~gA~~TPe~fvld~~g~~~~~l~Y~G~IDd~~~~~~~~~t~~~L~~Ai~alLaG~   79 (97)
                      .+.+.++++|...||.+||   +|    +. +.|..           +-..|.++|+.+++++
T Consensus       137 ~~~~~a~~~gv~GtPt~vv---nG----~~-~~G~~-----------~~~~l~~~i~~~~~~~  180 (186)
T 3bci_A          137 KDKKIAKDNHIKTTPTAFI---NG----EK-VEDPY-----------DYESYEKLLKDKIKLE  180 (186)
T ss_dssp             HHHHHHHHTTCCSSSEEEE---TT----EE-CSCTT-----------CHHHHHHHHHC-----
T ss_pred             HHHHHHHHcCCCCCCeEEE---CC----EE-cCCCC-----------CHHHHHHHHHHHHHhh
Confidence            3456789999999999988   66    32 34531           2347888998887764

>3ira_A Conserved protein; methanosarcina mazei,structural genomics, MCSG, protein structure initiative, midwest center for STRU genomics; 2.10A {Methanosarcina mazei}

Probab=88.93  E-value=0.46  Score=32.99  Aligned_cols=35  Identities=11%  Similarity=0.232  Sum_probs=28.2

Q ss_pred             EEEeChhhHHHHh--------CCccCceEEEEecCCCCCeeEEEeee
Q 034345           13 ITLFQSQDVARDF--------GAACTPEFFLFKKDGRRPFQLVYHGQ   51 (97)
Q Consensus        13 vL~D~~q~va~a~--------gA~~TPe~fvld~~g~~~~~l~Y~G~   51 (97)
                      |=.|+..++++.|        |...+|.+++|+++|    ++.|.|.
T Consensus        80 VD~de~~~l~~~y~~~~q~~~gv~g~Pt~v~l~~dG----~~v~~~t  122 (173)
T 3ira_A           80 VDREERPDIDNIYMTVCQIILGRGGWPLNIIMTPGK----KPFFAGT  122 (173)
T ss_dssp             EETTTCHHHHHHHHHHHHHHHSCCCSSEEEEECTTS----CEEEEES
T ss_pred             eCCcccCcHHHHHHHHHHHHcCCCCCcceeeECCCC----Cceeeee
Confidence            3334556888888        999999999999999    6888764

>3q6o_A Sulfhydryl oxidase 1; protein disulfide isomerase, thioredoxin, thioredoxin fold, oxidoreductase, reductive methylation; HET: MLY; 2.05A {Homo sapiens}

Probab=88.62  E-value=0.44  Score=33.33  Aligned_cols=52  Identities=17%  Similarity=0.151  Sum_probs=36.6

Q ss_pred             eChhhHHHHhCCccCceEEEEecCCC---CCeeEEEeeecCCCCCCCCCCCcHHHHHHHHHHHHcCCC
Q 034345           16 FQSQDVARDFGAACTPEFFLFKKDGR---RPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECVLSGQP   80 (97)
Q Consensus        16 D~~q~va~a~gA~~TPe~fvld~~g~---~~~~l~Y~G~IDd~~~~~~~~~t~~~L~~Ai~alLaG~~   80 (97)
                      |+.+++++.||...+|+++++++.+.   + ..+.|.|+            +...|++.|..++....
T Consensus        76 ~~~~~l~~~~~v~~~Pt~~~~~~g~~~~~g-~~~~~~g~------------~~~~l~~~i~~~l~~~~  130 (244)
T 3q6o_A           76 ETNSAVCRDFNIPGFPTVRFFXAFTXNGSG-AVFPVAGA------------DVQTLRERLIDALESHH  130 (244)
T ss_dssp             TTTHHHHHHTTCCSSSEEEEECTTCCSSSC-EECCCTTC------------CHHHHHHHHHHHHHTCT
T ss_pred             hhhHHHHHHcCCCccCEEEEEeCCCcCCCC-eeEecCCC------------CHHHHHHHHHHHHHhcc
Confidence            56789999999999999999997432   1 12233331            34578888888887654

>1eej_A Thiol:disulfide interchange protein; oxidoreductase, protein disulfide isomerase, protein folding, redox protein, redox-active center; HET: MES; 1.90A {Escherichia coli} SCOP: c.47.1.9 d.17.3.1 PDB: 1tjd_A 1jzd_A 1jzo_A 1g0t_A 2iyj_A

Probab=88.38  E-value=0.13  Score=36.07  Aligned_cols=46  Identities=13%  Similarity=0.258  Sum_probs=31.4

Q ss_pred             EEEeChhhHHHHhCCccCceEEEEecCCCCCeeEEEeeecCCCCCCCCCCCcHHHHHHHHHHHH
Q 034345           13 ITLFQSQDVARDFGAACTPEFFLFKKDGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECVL   76 (97)
Q Consensus        13 vL~D~~q~va~a~gA~~TPe~fvld~~g~~~~~l~Y~G~IDd~~~~~~~~~t~~~L~~Ai~alL   76 (97)
                      ..+|...+++++||...||++|+.  +|.     ++.|..+           ...|+++|+.++
T Consensus       165 ~~v~~~~~l~~~~gV~gtPt~v~~--dG~-----~~~G~~~-----------~~~l~~~l~~~~  210 (216)
T 1eej_A          165 VDIADHYALGVQLGVSGTPAVVLS--NGT-----LVPGYQP-----------PKEMKEFLDEHQ  210 (216)
T ss_dssp             CCHHHHHHHHHHHTCCSSSEEECT--TSC-----EEESCCC-----------HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCCccCEEEEc--CCe-----EecCCCC-----------HHHHHHHHHHhh
Confidence            456778899999999999998664  352     3467543           225666666543

>3kp8_A Vkorc1/thioredoxin domain protein; blood coagulation, disulfide formation, redox partner, oxidoreductase; 1.66A {Synechococcus SP}

Probab=88.26  E-value=0.49  Score=29.67  Aligned_cols=28  Identities=18%  Similarity=0.462  Sum_probs=22.4

Q ss_pred             ChhhHHHHhCCccCceEEEEecCCCCCeeEEEeeec
Q 034345           17 QSQDVARDFGAACTPEFFLFKKDGRRPFQLVYHGQF   52 (97)
Q Consensus        17 ~~q~va~a~gA~~TPe~fvld~~g~~~~~l~Y~G~I   52 (97)
                      +..++++.||...+|++++   +|    + .|.|..
T Consensus        54 ~~~~l~~~~~V~~~PT~~i---~G----~-~~~G~~   81 (106)
T 3kp8_A           54 PQAQECTEAGITSYPTWII---NG----R-TYTGVR   81 (106)
T ss_dssp             CCCHHHHHTTCCSSSEEEE---TT----E-EEESCC
T ss_pred             hhHHHHHHcCCeEeCEEEE---CC----E-EecCCC
Confidence            5678999999999999666   67    4 388864

>3t58_A Sulfhydryl oxidase 1; oxidoreductase; HET: FAD; 2.40A {Mus musculus} PDB: 3t59_A*

Probab=87.07  E-value=0.71  Score=37.06  Aligned_cols=35  Identities=20%  Similarity=0.331  Sum_probs=31.5

Q ss_pred             hhcceeEEEeChhhHHHHhCCccCceEEEEecCCC
Q 034345            7 LFLMWLITLFQSQDVARDFGAACTPEFFLFKKDGR   41 (97)
Q Consensus         7 ~~~~fpvL~D~~q~va~a~gA~~TPe~fvld~~g~   41 (97)
                      ..+.+++..|+++++++.||.+..|..++|+++|+
T Consensus       183 ~~v~v~~v~~~~~~l~~kfgV~~~Pslvl~~~nGk  217 (519)
T 3t58_A          183 HAVAVRRVLNTESDLVNKFGVTDFPSCYLLLRNGS  217 (519)
T ss_dssp             TTEEEEEEETTCHHHHHHHTCCCSSEEEEEETTSC
T ss_pred             CCeeEEEecCchHHHHHHcCCCCCCeEEEEeCCCc
Confidence            34668888999999999999999999999999995

>1t3b_A Thiol:disulfide interchange protein DSBC; oxidoreductase, protein disulfide isomerase, protein folding, redox protein; 2.50A {Haemophilus influenzae} SCOP: c.47.1.9 d.17.3.1

Probab=86.78  E-value=0.14  Score=35.87  Aligned_cols=42  Identities=21%  Similarity=0.358  Sum_probs=29.3

Q ss_pred             EeChhhHHHHhCCccCceEEEEecCCCCCeeEEEeeecCCCCCCCCCCCcHHHHHHHHHH
Q 034345           15 LFQSQDVARDFGAACTPEFFLFKKDGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIEC   74 (97)
Q Consensus        15 ~D~~q~va~a~gA~~TPe~fvld~~g~~~~~l~Y~G~IDd~~~~~~~~~t~~~L~~Ai~a   74 (97)
                      +|.+.++++.||.+.||.+|+  .+|    + ++.|..+           ...|+.+|++
T Consensus       167 v~~~~~l~~~~gV~gTPt~vi--~nG----~-~~~G~~~-----------~~~l~~~l~~  208 (211)
T 1t3b_A          167 VKKHYELGIQFGVRGTPSIVT--STG----E-LIGGYLK-----------PADLLRALEE  208 (211)
T ss_dssp             HHHHHHHHHHHTCCSSCEEEC--TTS----C-CCCSCCC-----------HHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCCcCCEEEE--eCC----E-EecCCCC-----------HHHHHHHHHh
Confidence            456778999999999999988  466    3 3445432           3367777764

>1sji_A Calsequestrin 2, calsequestrin, cardiac muscle isoform; glycoprotein, calcium-binding, muscle protein, metal binding protein; 2.40A {Canis lupus familiaris} PDB: 2vaf_A

Probab=86.73  E-value=0.5  Score=34.97  Aligned_cols=35  Identities=17%  Similarity=0.447  Sum_probs=28.7

Q ss_pred             EeChhhHHHHhCCccCceEEEEecCCCCCeeEEEeeecC
Q 034345           15 LFQSQDVARDFGAACTPEFFLFKKDGRRPFQLVYHGQFD   53 (97)
Q Consensus        15 ~D~~q~va~a~gA~~TPe~fvld~~g~~~~~l~Y~G~ID   53 (97)
                      .|...++++.||....|+.+++ ++|+   ...|.|..+
T Consensus        75 ~~~~~~l~~~~~v~~~Pt~~~~-~~g~---~~~~~G~~~  109 (350)
T 1sji_A           75 AKKEAKLAKKLGFDEEGSLYVL-KGDR---TIEFDGEFA  109 (350)
T ss_dssp             TTTTHHHHHHHTCCSTTEEEEE-ETTE---EEEECSCCC
T ss_pred             CCCCHHHHHhcCCCccceEEEE-ECCc---EEEecCCCC
Confidence            4567889999999999999999 5663   678999744

>3kzq_A Putative uncharacterized protein VP2116; protein with unknown function, STRU genomics, PSI, MCSG, protein structure initiative; HET: PG6; 2.10A {Vibrio parahaemolyticus}

Probab=85.41  E-value=0.91  Score=31.13  Aligned_cols=49  Identities=10%  Similarity=0.126  Sum_probs=30.9

Q ss_pred             ChhhHHHHhCCccCceEEEEecCCCCCeeEEEeeecCCCCCCCCCCCcHHHHHHHHHHHHcCC
Q 034345           17 QSQDVARDFGAACTPEFFLFKKDGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECVLSGQ   79 (97)
Q Consensus        17 ~~q~va~a~gA~~TPe~fvld~~g~~~~~l~Y~G~IDd~~~~~~~~~t~~~L~~Ai~alLaG~   79 (97)
                      .+.+.|+++|+..||.++|-+ +|+  ......|.-           +...+.++|+.++++.
T Consensus       157 ~~~~~a~~~gv~g~Pt~~v~~-~~~--~~~~~~g~~-----------~~e~~~~~i~~~~~~~  205 (208)
T 3kzq_A          157 DQLSLAKSLGVNSYPSLVLQI-NDA--YFPIEVDYL-----------STEPTLKLIRERIIEN  205 (208)
T ss_dssp             HHHHHHHHTTCCSSSEEEEEE-TTE--EEEECCCSS-----------CSHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHcCCCcccEEEEEE-CCE--EEEeeCCCC-----------CHHHHHHHHHHHHhcc
Confidence            445778899999999988755 341  122223321           1236788888888654

>3c7m_A Thiol:disulfide interchange protein DSBA-like; redox protein, periplasm, redox-active center, oxidoreductase; HET: PGE; 1.55A {Escherichia coli} PDB: 3l9u_A

Probab=85.35  E-value=0.3  Score=32.56  Aligned_cols=46  Identities=9%  Similarity=0.040  Sum_probs=29.8

Q ss_pred             eChhhHHHHhCCccCceEEEEecCCCCCeeEEEeeecCCCCCCCCCCCcHHHHHHHHHHHHc
Q 034345           16 FQSQDVARDFGAACTPEFFLFKKDGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECVLS   77 (97)
Q Consensus        16 D~~q~va~a~gA~~TPe~fvld~~g~~~~~l~Y~G~IDd~~~~~~~~~t~~~L~~Ai~alLa   77 (97)
                      +.+.+.++++|...||+++|   +|+  ..+...|..           +...+..+|+.+++
T Consensus       149 ~~~~~~a~~~gv~gtPt~~i---ng~--~~~~~~g~~-----------~~~~l~~~i~~~l~  194 (195)
T 3c7m_A          149 EKWKASYDVAKIQGVPAYVV---NGK--YLIYTKSIK-----------SIDAMADLIRELAS  194 (195)
T ss_dssp             HHGGGHHHHHHHHCSSEEEE---TTT--EEECGGGCC-----------CHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHcCCCccCEEEE---CCE--EEeccCCCC-----------CHHHHHHHHHHHHh
Confidence            44567889999999999655   452  122211321           23478999998875

>3gmf_A Protein-disulfide isomerase; oxidoreductase, PSI-2, NYSGXRC, structu genomics, protein structure initiative; 1.76A {Novosphingobium aromaticivorans}

Probab=84.91  E-value=0.77  Score=32.25  Aligned_cols=42  Identities=29%  Similarity=0.472  Sum_probs=30.3

Q ss_pred             hhhHH-HHhCCccCceEEEEecCCCCCeeEEEeeecCCCCCCCCCCCcHHHHHHHHHHHHcC
Q 034345           18 SQDVA-RDFGAACTPEFFLFKKDGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECVLSG   78 (97)
Q Consensus        18 ~q~va-~a~gA~~TPe~fvld~~g~~~~~l~Y~G~IDd~~~~~~~~~t~~~L~~Ai~alLaG   78 (97)
                      +.+.+ +++|.+.||.+||   +|    + .+.|+.+           -..|+.+|+.+++.
T Consensus       156 ~~~~a~~~~GV~GtPtfvv---ng----~-~~~G~~~-----------~e~l~~~i~~~~~~  198 (205)
T 3gmf_A          156 ETDEAINQYNVSGTPSFMI---DG----I-LLAGTHD-----------WASLRPQILARLNE  198 (205)
T ss_dssp             HHHHHHHHHCCCSSSEEEE---TT----E-ECTTCCS-----------HHHHHHHHHHHHTC
T ss_pred             HHHHHHHHcCCccCCEEEE---CC----E-EEeCCCC-----------HHHHHHHHHHHhhc
Confidence            34566 8999999999998   56    4 3556432           34799999888764

>2hls_A Protein disulfide oxidoreductase; thioredoxin fold; 1.93A {Aeropyrum pernix}

Probab=84.44  E-value=2.2  Score=30.28  Aligned_cols=56  Identities=18%  Similarity=0.280  Sum_probs=37.3

Q ss_pred             cceeEE-EeChhhHHHHhCCccCceEEEEecCCCCCeeEEEeeecCCCCCCCCCCCcHHHHHHHHHHHH--cCCCC
Q 034345            9 LMWLIT-LFQSQDVARDFGAACTPEFFLFKKDGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECVL--SGQPV   81 (97)
Q Consensus         9 ~~fpvL-~D~~q~va~a~gA~~TPe~fvld~~g~~~~~l~Y~G~IDd~~~~~~~~~t~~~L~~Ai~alL--aG~~v   81 (97)
                      +.|-.+ .|+.+++++.||....|.+.++  +|    ..+|+|.-+.           +.+..-+++++  .|.++
T Consensus        65 v~~~~vd~d~~~~~~~~~gv~~~Pt~~i~--~g----~~~~~G~~~~-----------~~l~~fv~~~l~~~~~~~  123 (243)
T 2hls_A           65 LKLNVYYRESDSDKFSEFKVERVPTVAFL--GG----EVRWTGIPAG-----------EEIRALVEVIMRLSEDES  123 (243)
T ss_dssp             EEEEEEETTTTHHHHHHTTCCSSSEEEET--TT----TEEEESCCCT-----------THHHHHHHHHHHHHTTCC
T ss_pred             eEEEEecCCcCHHHHHhcCCCcCCEEEEE--CC----ceeEcCCCcH-----------HHHHHHHHHHHhccCCCC
Confidence            444332 3567889999999999999998  34    3889997422           24666666655  34443

>3hz8_A Thiol:disulfide interchange protein DSBA; thiol-oxidoreductase, disulfide bond; 1.45A {Neisseria meningitidis MC58} PDB: 3dvw_A 3a3t_A

Probab=84.23  E-value=0.9  Score=31.06  Aligned_cols=42  Identities=12%  Similarity=0.125  Sum_probs=28.7

Q ss_pred             ChhhHHHHhCCccCceEEEEecCCCCCeeEEEeeecCCCCCCCCCCCcHHHHHHHHHHHHc
Q 034345           17 QSQDVARDFGAACTPEFFLFKKDGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECVLS   77 (97)
Q Consensus        17 ~~q~va~a~gA~~TPe~fvld~~g~~~~~l~Y~G~IDd~~~~~~~~~t~~~L~~Ai~alLa   77 (97)
                      .+.+.++++|...||.+||   +|    +.. .|..  .         ...+.++|+.+++
T Consensus       142 ~~~~~a~~~gv~gtPt~vv---ng----~~~-~~~~--~---------~e~l~~~i~~ll~  183 (193)
T 3hz8_A          142 KMQELTETFQIDGVPTVIV---GG----KYK-VEFA--D---------WESGMNTIDLLAD  183 (193)
T ss_dssp             HHHHHHHHTTCCSSSEEEE---TT----TEE-ECCS--S---------HHHHHHHHHHHHH
T ss_pred             HHHHHHHHhCCCcCCEEEE---CC----EEE-ecCC--C---------HHHHHHHHHHHHH
Confidence            3567789999999999987   56    233 3322  1         3367788888775

>2djj_A PDI, protein disulfide-isomerase; thioredoxin fold; NMR {Humicola insolens} SCOP: c.47.1.2 PDB: 2kp1_A

Probab=83.62  E-value=0.5  Score=28.85  Aligned_cols=43  Identities=21%  Similarity=0.165  Sum_probs=29.9

Q ss_pred             hHHHHhCCccCceEEEEecCCCCCe-eEEEeeecCCCCCCCCCCCcHHHHHHHHHHHHc
Q 034345           20 DVARDFGAACTPEFFLFKKDGRRPF-QLVYHGQFDDSRPSNNLPVTGRDIRLAIECVLS   77 (97)
Q Consensus        20 ~va~a~gA~~TPe~fvld~~g~~~~-~l~Y~G~IDd~~~~~~~~~t~~~L~~Ai~alLa   77 (97)
                      .+++  +...+|++++++++|+  . ..+|.|..           +...|.+.|+.++.
T Consensus        74 ~~~~--~v~~~Pt~~~~~~~~~--~~~~~~~G~~-----------~~~~l~~~i~~~~~  117 (121)
T 2djj_A           74 DVPD--EIQGFPTIKLYPAGAK--GQPVTYSGSR-----------TVEDLIKFIAENGK  117 (121)
T ss_dssp             CCSS--CCSSSSEEEEECSSCT--TSCCCCCCCS-----------CHHHHHHHHHHTSS
T ss_pred             cccc--ccCcCCeEEEEeCcCC--CCceEecCCC-----------CHHHHHHHHHhccC
Confidence            4555  9999999999998873  1 34566643           24478888877654

>1wjk_A C330018D20RIK protein; glutaredoxin, thioredoxin fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: c.47.1.1

Probab=83.28  E-value=0.59  Score=28.88  Aligned_cols=41  Identities=10%  Similarity=0.201  Sum_probs=26.7

Q ss_pred             ChhhHHHHhCCccCceEEEEecCCCCCeeEEEeeecCCCCCCCCCCCcHHHHHHHHHHHH
Q 034345           17 QSQDVARDFGAACTPEFFLFKKDGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECVL   76 (97)
Q Consensus        17 ~~q~va~a~gA~~TPe~fvld~~g~~~~~l~Y~G~IDd~~~~~~~~~t~~~L~~Ai~alL   76 (97)
                      +..++++.|| ..+|.+| +  +|+   .+ ..|.+|.           ..|+++|+.++
T Consensus        55 ~~~el~~~~g-~~vP~l~-~--~g~---~~-~~~g~~~-----------~~l~~~l~~~~   95 (100)
T 1wjk_A           55 ENSTWYERYK-FDIPVFH-L--NGQ---FL-MMHRVNT-----------SKLEKQLRKLS   95 (100)
T ss_dssp             TTHHHHHHSS-SSCSEEE-E--SSS---EE-EESSCCH-----------HHHHHHHHSSS
T ss_pred             chHHHHHHHC-CCCCEEE-E--CCE---EE-EecCCCH-----------HHHHHHHHHHH
Confidence            5688999999 9999765 3  553   33 4455432           36777776544

>1z6m_A Conserved hypothetical protein; structural genomics, MCSG,, protein structure initiative, midwest center for structural genomics; HET: MSE; 1.30A {Enterococcus faecalis} SCOP: c.47.1.13

Probab=81.27  E-value=0.45  Score=31.46  Aligned_cols=20  Identities=10%  Similarity=0.021  Sum_probs=16.1

Q ss_pred             eChhhHHHHhCCccCceEEE
Q 034345           16 FQSQDVARDFGAACTPEFFL   35 (97)
Q Consensus        16 D~~q~va~a~gA~~TPe~fv   35 (97)
                      +...+.++++|...||.+||
T Consensus       136 ~~~~~~a~~~gv~gtPt~vv  155 (175)
T 1z6m_A          136 SAVIAEANAAHIQFVPTIII  155 (175)
T ss_dssp             HHHHHHHHHHTCCSSCEEEE
T ss_pred             HHHHHHHHHcCCCCcCeEEE
Confidence            34567899999999999555

>3gl5_A Putative DSBA oxidoreductase SCO1869; probable DSBA oxidoreductase structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.15A {Streptomyces coelicolor A3}

Probab=80.93  E-value=2.2  Score=30.42  Aligned_cols=46  Identities=20%  Similarity=0.203  Sum_probs=33.5

Q ss_pred             hhhHHHHhCCccCceEEEEecCCCCCeeEEEeeecCCCCCCCCCCCcHHHHHHHHHHHHcCCCC
Q 034345           18 SQDVARDFGAACTPEFFLFKKDGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECVLSGQPV   81 (97)
Q Consensus        18 ~q~va~a~gA~~TPe~fvld~~g~~~~~l~Y~G~IDd~~~~~~~~~t~~~L~~Ai~alLaG~~v   81 (97)
                      +.+.|+++|+..||.++|   +|    +....|+-+           ...+.++|+.+++....
T Consensus       172 ~~~~a~~~Gv~GvPtfvv---~g----~~~v~Ga~~-----------~e~~~~~i~~~~~~~~~  217 (239)
T 3gl5_A          172 DEREAAQLGATGVPFFVL---DR----AYGVSGAQP-----------AEVFTQALTQAWGERTP  217 (239)
T ss_dssp             HHHHHHHTTCCSSSEEEE---TT----TEEEESSCC-----------HHHHHHHHHHHHHTCCC
T ss_pred             HHHHHHHCCCCeeCeEEE---CC----cEeecCCCC-----------HHHHHHHHHHHHhhcCc
Confidence            345678999999999887   45    445577522           34789999999987643

>1z6n_A Hypothetical protein PA1234; alpha-beta-alpha sandwich, structura genomics, PSI, protein structure initiative; 1.50A {Pseudomonas aeruginosa} SCOP: c.47.1.1 PDB: 3lef_A

Probab=80.78  E-value=0.78  Score=31.29  Aligned_cols=34  Identities=12%  Similarity=0.002  Sum_probs=26.4

Q ss_pred             EeChhhHHHHhC---CccCceEEEEecCCCCCeeEEEeee
Q 034345           15 LFQSQDVARDFG---AACTPEFFLFKKDGRRPFQLVYHGQ   51 (97)
Q Consensus        15 ~D~~q~va~a~g---A~~TPe~fvld~~g~~~~~l~Y~G~   51 (97)
                      .|+..++++.|+   ....|+++++|++|+   .+...|.
T Consensus        93 ~d~~~~~~~~~~~~~v~~iPt~i~~~~~G~---~~~~~g~  129 (167)
T 1z6n_A           93 KGRAEDDLRQRLALERIAIPLVLVLDEEFN---LLGRFVE  129 (167)
T ss_dssp             HHHHHHHTTTTTTCSSCCSSEEEEECTTCC---EEEEEES
T ss_pred             CCCCHHHHHHHHHcCCCCcCeEEEECCCCC---EEEEEcC
Confidence            467778889997   899999999999985   3443454

>3hd5_A Thiol:disulfide interchange protein DSBA; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.35A {Bordetella parapertussis}

Probab=80.49  E-value=1  Score=30.29  Aligned_cols=46  Identities=11%  Similarity=0.177  Sum_probs=30.3

Q ss_pred             eChhhHHHHhCCccCceEEEEecCCCCCeeEEEeeecCCCCCCCCCCCcH-HHHHHHHHHHHc
Q 034345           16 FQSQDVARDFGAACTPEFFLFKKDGRRPFQLVYHGQFDDSRPSNNLPVTG-RDIRLAIECVLS   77 (97)
Q Consensus        16 D~~q~va~a~gA~~TPe~fvld~~g~~~~~l~Y~G~IDd~~~~~~~~~t~-~~L~~Ai~alLa   77 (97)
                      ..+.+.++++|...||.++|   +|    +...-|.-..+         . ..+.+.|+.|++
T Consensus       138 ~~~~~~a~~~gv~gtPt~vi---ng----~~~~~g~~~~~---------~~e~~~~~i~~L~~  184 (195)
T 3hd5_A          138 QRASQLAEAAHIDGTPAFAV---GG----RYMTSPVLAGN---------DYAGALKVVDQLIV  184 (195)
T ss_dssp             HHHHHHHHHTTCCSSSEEEE---TT----TEEECTTTTTG---------GGTTHHHHHHHHHH
T ss_pred             HHHHHHHHHhCCCcCceEEE---CC----EEEeCccccCC---------hHHHHHHHHHHHHH
Confidence            34567889999999999998   56    34444442211         2 247777777765

>3us3_A Calsequestrin-1; calcium-binding protein; 1.74A {Oryctolagus cuniculus} PDB: 1a8y_A 3v1w_A* 3trq_A* 3trp_A* 3uom_A

Probab=80.30  E-value=1.6  Score=32.73  Aligned_cols=33  Identities=24%  Similarity=0.558  Sum_probs=27.4

Q ss_pred             eChhhHHHHhCCccCceEEEEecCCCCCeeEEEeeec
Q 034345           16 FQSQDVARDFGAACTPEFFLFKKDGRRPFQLVYHGQF   52 (97)
Q Consensus        16 D~~q~va~a~gA~~TPe~fvld~~g~~~~~l~Y~G~I   52 (97)
                      |...++++.||....|+++++. +|.   .+.|.|..
T Consensus        78 ~~~~~l~~~~~V~~~PTl~~f~-~G~---~~~y~G~~  110 (367)
T 3us3_A           78 EKDAAVAKKLGLTEEDSIYVFK-EDE---VIEYDGEF  110 (367)
T ss_dssp             TTTHHHHHHHTCCSTTEEEEEE-TTE---EEECCSCC
T ss_pred             cccHHHHHHcCCCcCceEEEEE-CCc---EEEeCCCC
Confidence            5678999999999999999997 463   57888864

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	97
d2cvba1	187	c.47.1.10 (A:2-188) Probable thiol-disulfide isome	1e-17

>d2cvba1 c.47.1.10 (A:2-188) Probable thiol-disulfide isomerase/thioredoxin TTHA0593 {Thermus thermophilus [TaxId: 274]} Length = 187

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Probable thiol-disulfide isomerase/thioredoxin TTHA0593
species: Thermus thermophilus [TaxId: 274]

 Score = 71.1 bits (173), Expect = 1e-17
 Identities = 28/79 (35%), Positives = 41/79 (51%), Gaps = 9/79 (11%)

Query: 19  QDVARDFGAACTPEFFLFKKDGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECVLSG 78
           Q+VA+ + A  TPE FLF +       L YHG+ +D+ P +   V   D+  AIE +L G
Sbjct: 105 QEVAKAYRALRTPEVFLFDERRL----LRYHGRVNDN-PKDPSKVQSHDLEAAIEALLRG 159

Query: 79  QPVSSNQKPS----IKWHP 93
           +     + P+    IKW P
Sbjct: 160 EEPPLKEAPAIGCTIKWRP 178

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	97
d2cvba1	187	Probable thiol-disulfide isomerase/thioredoxin TTH	99.93
d2b5xa1	143	thiol:disulfide oxidoreductase YkuV {Bacillus subt	98.86
d1st9a_	137	Thiol-disulfide oxidoreductase ResA {Bacillus subt	98.82
d2fy6a1	143	Peptide methionine sulfoxide reductase MsrA/MsrB,	98.75
d1lu4a_	134	Soluble secreted antigen MPT53 {Mycobacterium tube	98.7
d1zzoa1	134	Lipoprotein DsbF {Mycobacterium tuberculosis [TaxI	98.68
d1qmva_	197	Thioredoxin peroxidase 2 (thioredoxin peroxidase B	98.48
d2bmxa1	169	Alkyl hydroperoxide reductase AhpC {Mycobacterium	98.48
d1z5ye1	136	Thioredoxin-like protein CcmG (CycY, DsbE) {Escher	98.45
d2cx4a1	160	Bacterioferritin comigratory protein {Archaeon Aer	98.4
d1knga_	144	Thioredoxin-like protein CcmG (CycY, DsbE) {Bradyr	98.38
d2h01a1	170	Thioredoxin peroxidase 2 (thioredoxin peroxidase B	98.38
d1uula_	194	Tryparedoxin peroxidase (thioredoxin peroxidase ho	98.36
d1we0a1	166	Alkyl hydroperoxide reductase AhpC {Amphibacillus	98.3
d2a4va1	156	Peroxiredoxin dot5 {Baker's yeast (Saccharomyces c	98.18
d1e2ya_	167	Tryparedoxin peroxidase (thioredoxin peroxidase ho	98.13
d1n8ja_	186	Alkyl hydroperoxide reductase AhpC {Salmonella typ	98.13
d1xvwa1	153	Putative peroxiredoxin Rv2238c/MT2298 {Mycobacteri	98.12
d2zcta1	237	Peroxiredoxin {Aeropyrum pernix [TaxId: 56636]}	98.07
d1prxa_	220	1-Cys peroxiredoxin {Human (Homo sapiens) [TaxId:	97.98
d1jfua_	176	Membrane-anchored thioredoxin-like protein TlpA, s	97.97
d1zyea1	158	Peroxiredoxin-3 (AOP-1, SP-22) {Cow (Bos taurus) [	97.87
d1zofa1	170	Thioredoxin reductase TsaA {Helicobacter pylori [T	97.83
d1qxha_	164	Thiol peroxidase Tpx {Escherichia coli [TaxId: 562	97.62
d1xvqa_	166	Thiol peroxidase Tpx {Mycobacterium tuberculosis [	97.5
d1xcca_	219	1-Cys peroxiredoxin {Plasmodium yoelii yoelii [Tax	97.23
d1psqa_	163	Probable thiol peroxidase PsaD {Streptococcus pneu	97.16
d1o8xa_	144	Tryparedoxin I {Crithidia fasciculata [TaxId: 5656	96.95
d2b7ka1	169	Thioredoxin-like protein Sco1 (YpmQ), soluble doma	96.66
d1q98a_	164	Thiol peroxidase Tpx {Haemophilus influenzae [TaxI	96.54
d2trxa_	108	Thioredoxin {Escherichia coli [TaxId: 562]}	96.5
d1a8la2	107	Protein disulfide isomerase, PDI {Archaeon Pyrococ	96.46
d1dbya_	107	Thioredoxin {Chlamydomonas reinhardtii [TaxId: 305	96.41
d1nhoa_	85	MTH807, thioredoxin/glutaredoxin-like protein {Arc	96.37
d1fb6a_	104	Thioredoxin {Spinach (Spinacia oleracea), thioredo	95.98
d1nw2a_	105	Thioredoxin {Alicyclobacillus acidocaldarius, form	95.91
d2es7a1	119	Hydrogenase-1 operon protein HyaE {Salmonella typh	95.89
d1thxa_	108	Thioredoxin {Anabaena sp., pcc 7120 [TaxId: 1167]}	95.84
d2hfda1	132	Hydrogenase-1 operon protein HyaE {Escherichia col	95.72
d2ifqa1	105	Thioredoxin {Human (Homo sapiens) [TaxId: 9606]}	95.64
d1o73a_	144	Tryparedoxin I {Trypanosoma brucei brucei [TaxId:	95.45
d1f9ma_	112	Thioredoxin {Spinach (Spinacia oleracea), thioredo	94.96
d1ep7a_	112	Thioredoxin {Chlamydomonas reinhardtii [TaxId: 305	94.95
d2fwha1	117	Thiol:disulfide interchange protein DsbD, C-termin	94.93
d1fo5a_	85	MJ0307, thioredoxin/glutaredoxin-like protein {Arc	94.86
d1xfla_	114	Thioredoxin {Thale cress (Arabidopsis thaliana) [T	94.62
d1xzoa1	172	Thioredoxin-like protein Sco1 (YpmQ), soluble doma	94.54
d1gh2a_	107	Thioredoxin-like protein, N-terminal domain {Human	94.35
d1i5ga_	144	Tryparedoxin II {Crithidia fasciculata [TaxId: 565	94.1
d1v58a1	169	Thiol:disulfide interchange protein DsbG, C-termin	93.99
d1hyua4	96	Alkyl hydroperoxide reductase subunit F (AhpF), N-	93.74
d2dlxa1	147	UBX domain-containing protein 7 {Human (Homo sapie	93.56
d1hd2a_	161	Peroxiredoxin 5 {Human (Homo sapiens) [TaxId: 9606	93.56
d1ti3a_	113	Thioredoxin {European aspen (Populus tremula), thi	93.52
d1xwaa_	111	Thioredoxin {Fruit fly (Drosophila melanogaster) [	93.48
d1wp0a1	160	Thioredoxin-like protein Sco1 (YpmQ), soluble doma	93.38
d1r26a_	113	Thioredoxin {Trypanosoma brucei [TaxId: 5691]}	93.32
d1wjka_	100	Thioredoxin-like structure containing protein C330	92.55
d1eeja1	156	Disulfide bond isomerase, DsbC, C-terminal domain	92.38
d1syra_	103	Thioredoxin {Malarial parasite (Plasmodium falcipa	92.06
d1nm3a2	163	N-terminal, Prx domain of Hybrid-Prx5 {Haemophilus	90.9
d2f8aa1	184	Glutathione peroxidase {Human (Homo sapiens) [TaxI	90.6
d2b5ea4	119	Protein disulfide isomerase, PDI {Baker's yeast (S	89.93
d1a8la1	119	Protein disulfide isomerase, PDI {Archaeon Pyrococ	89.23
d1a8ya1	124	Calsequestrin {Rabbit (Oryctolagus cuniculus) [Tax	89.19
d1qgva_	137	spliceosomal protein U5-15Kd {Human (Homo sapiens)	89.11
d1beda_	181	Disulfide-bond formation facilitator (DsbA) {Vibri	89.07
d1t3ba1	150	Disulfide bond isomerase, DsbC, C-terminal domain	89.05
d1tp9a1	162	Plant peroxiredoxin {Western balsam poplar(Populus	88.75
d1zmaa1	115	Bacterocin transport accessory protein Bta {Strept	88.14
d1meka_	120	Protein disulfide isomerase, PDI {Human (Homo sapi	84.73
d1z6ma1	172	Hypothetical protein EF0770 {Enterococcus faecalis	83.2
d1woua_	119	Putative 42-9-9 protein (thioredoxin containing pr	81.43
d1fvka_	188	Disulfide-bond formation facilitator (DsbA) {Esche	81.38
d1ry2a_	640	Acetyl-CoA synthetase {Baker's yeast (Saccharomyce	81.08

>d2cvba1 c.47.1.10 (A:2-188) Probable thiol-disulfide isomerase/thioredoxin TTHA0593 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Probable thiol-disulfide isomerase/thioredoxin TTHA0593
species: Thermus thermophilus [TaxId: 274]

Probab=99.93  E-value=1.4e-26  Score=164.02  Aligned_cols=83  Identities=34%  Similarity=0.601  Sum_probs=77.6

Q ss_pred             hcceeEEEeChhhHHHHhCCccCceEEEEecCCCCCeeEEEeeecCCCCCCCCCCCcHHHHHHHHHHHHcCCCCCCCCCC
Q 034345            8 FLMWLITLFQSQDVARDFGAACTPEFFLFKKDGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECVLSGQPVSSNQKP   87 (97)
Q Consensus         8 ~~~fpvL~D~~q~va~a~gA~~TPe~fvld~~g~~~~~l~Y~G~IDd~~~~~~~~~t~~~L~~Ai~alLaG~~v~~~~t~   87 (97)
                      .++||+++|++++++++||+.+||++||||++|    +|+|||+|||++ .....++.+||++||+++|+|+++++++|+
T Consensus        94 ~~~~p~l~D~~~~~~~~~~v~~~P~~~liD~~G----~i~y~G~idd~~-~~~~~~~~~~L~~Ai~~ll~g~~~~~~~t~  168 (187)
T d2cvba1          94 GIFFPYLLDETQEVAKAYRALRTPEVFLFDERR----LLRYHGRVNDNP-KDPSKVQSHDLEAAIEALLRGEEPPLKEAP  168 (187)
T ss_dssp             TCCSCEEECSSSHHHHHTTCCEESEEEEECTTC----BEEEEECSSSCT-TCGGGCCCCHHHHHHHHHHTTCCCCSSCCC
T ss_pred             CCcceeeechhhhhcccccccceeeEEEEcCCC----eEEEEeeecCCC-CCCCCCCHHHHHHHHHHHHcCCCCCccccC
Confidence            578999999999999999999999999999999    799999999995 455667889999999999999999999999


Q ss_pred             c----eeecCCC
Q 034345           88 S----IKWHPQT   95 (97)
Q Consensus        88 ~----IKw~~~~   95 (97)
                      |    |||++|.
T Consensus       169 ~~GC~ik~~~~~  180 (187)
T d2cvba1         169 AIGCTIKWRPGN  180 (187)
T ss_dssp             CCSEECCCCTTC
T ss_pred             CCCcceeECCCC
Confidence            9    9999986

>d2b5xa1 c.47.1.10 (A:1-143) thiol:disulfide oxidoreductase YkuV {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: thiol:disulfide oxidoreductase YkuV
species: Bacillus subtilis [TaxId: 1423]

Probab=98.86  E-value=2.2e-09  Score=70.46  Aligned_cols=56  Identities=14%  Similarity=0.246  Sum_probs=44.9

Q ss_pred             hhcceeEEEeChhhHHHHhCCccCceEEEEecCCCCCeeEEEeeecCCCCCCCCCCCcHHHHHHHHHHH
Q 034345            7 LFLMWLITLFQSQDVARDFGAACTPEFFLFKKDGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECV   75 (97)
Q Consensus         7 ~~~~fpvL~D~~q~va~a~gA~~TPe~fvld~~g~~~~~l~Y~G~IDd~~~~~~~~~t~~~L~~Ai~al   75 (97)
                      ..++||++.|.+++++++||+..+|++||||++|+  ++-++.|..+           ...|+++|++|
T Consensus        88 ~~~~~p~~~D~~~~~~~~~~v~~~P~~~~id~~G~--i~~~~~G~~~-----------~~~l~~~l~~l  143 (143)
T d2b5xa1          88 HDITQPIFVDSDHALTDAFENEYVPAYYVFDKTGQ--LRHFQAGGSG-----------MKMLEKRVNRV  143 (143)
T ss_dssp             TTCCSCEEECSSCHHHHHTCCCCSSEEEEECTTCB--EEEEEESCST-----------THHHHHHHHHH
T ss_pred             hccCccccccCccchHHHcCCCcCCEEEEECCCCE--EEEEEECCCC-----------HHHHHHHHHhC
Confidence            45789999999999999999999999999999994  3345556422           34788888765

>d1st9a_ c.47.1.10 (A:) Thiol-disulfide oxidoreductase ResA {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thiol-disulfide oxidoreductase ResA
species: Bacillus subtilis [TaxId: 1423]

Probab=98.82  E-value=2.9e-09  Score=69.16  Aligned_cols=53  Identities=19%  Similarity=0.301  Sum_probs=42.9

Q ss_pred             hcceeEEEeChhhHHHHhCCccCceEEEEecCCCCCeeEEEe--eecCCCCCCCCCCCcHHHHHHHHHHH
Q 034345            8 FLMWLITLFQSQDVARDFGAACTPEFFLFKKDGRRPFQLVYH--GQFDDSRPSNNLPVTGRDIRLAIECV   75 (97)
Q Consensus         8 ~~~fpvL~D~~q~va~a~gA~~TPe~fvld~~g~~~~~l~Y~--G~IDd~~~~~~~~~t~~~L~~Ai~al   75 (97)
                      .++||++.|.++++++.||+..+|++||||++|    +++|+  |.++..           .+++.|+.|
T Consensus        81 ~~~~~~~~d~~~~~~~~~~v~~~P~~~liD~~G----~i~~~~~G~~~~~-----------~~~~~l~~l  135 (137)
T d1st9a_          81 GVNFPVVLDTDRQVLDAYDVSPLPTTFLINPEG----KVVKVVTGTMTES-----------MIHDYMNLI  135 (137)
T ss_dssp             TCCSCEEEETTSHHHHHTTCCSSCEEEEECTTS----EEEEEEESCCCHH-----------HHHHHHHHH
T ss_pred             CCCccccccccchhhhhhhccccceEEEECCCC----EEEEEEECCCCHH-----------HHHHHHHhh
Confidence            578999999999999999999999999999999    55554  766432           566666544

>d2fy6a1 c.47.1.10 (A:33-175) Peptide methionine sulfoxide reductase MsrA/MsrB, N-terminal domain {Neisseria meningitidis serogroup A [TaxId: 65699]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Peptide methionine sulfoxide reductase MsrA/MsrB, N-terminal domain
species: Neisseria meningitidis serogroup A [TaxId: 65699]

Probab=98.75  E-value=3.5e-09  Score=68.89  Aligned_cols=55  Identities=16%  Similarity=0.215  Sum_probs=44.7

Q ss_pred             cceeEEEeChhhHHHHhCCccCceEEEEecCCCCCeeEEEeeecCCCCCCCCCCCcHHHHHHHHHHHH
Q 034345            9 LMWLITLFQSQDVARDFGAACTPEFFLFKKDGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECVL   76 (97)
Q Consensus         9 ~~fpvL~D~~q~va~a~gA~~TPe~fvld~~g~~~~~l~Y~G~IDd~~~~~~~~~t~~~L~~Ai~alL   76 (97)
                      ..||++.|+++.+++.||+..+|+.||||++|+  ++-++.|.++..           .+...|+.+.
T Consensus        86 ~~~~~~~D~~~~~~~~~~v~~~P~~~liD~~G~--i~~~~~G~~~~~-----------~~~~~l~~~~  140 (143)
T d2fy6a1          86 PKLPVVTDNGGTIAQSLNISVYPSWALIGKDGD--VQRIVKGSINEA-----------QALALIRDPN  140 (143)
T ss_dssp             TTSCEEECTTCHHHHHTTCCSSSEEEEECTTSC--EEEEEESCCCHH-----------HHHHHHHCTT
T ss_pred             cccccccccchHHHHHcCCCccCEEEEECCCCE--EEEEEECCCCHH-----------HHHHHHHHHh
Confidence            458999999999999999999999999999995  455667887543           5776666554

>d1lu4a_ c.47.1.10 (A:) Soluble secreted antigen MPT53 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Soluble secreted antigen MPT53
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.70  E-value=1.8e-08  Score=65.38  Aligned_cols=57  Identities=9%  Similarity=0.180  Sum_probs=46.2

Q ss_pred             hcceeEEEeChhhHHHHhCCccCceEEEEecCCCCCeeEEEeeecCCCCCCCCCCCcHHHHHHHHHHH
Q 034345            8 FLMWLITLFQSQDVARDFGAACTPEFFLFKKDGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECV   75 (97)
Q Consensus         8 ~~~fpvL~D~~q~va~a~gA~~TPe~fvld~~g~~~~~l~Y~G~IDd~~~~~~~~~t~~~L~~Ai~al   75 (97)
                      .++||++.|+++.++++||+..+|++||||++|    +++|....-.       ..+...|.++|++|
T Consensus        78 ~~~~p~~~d~~~~~~~~~~v~~~P~~~lid~~G----~i~~v~~~~g-------~~~~~~l~~~l~~L  134 (134)
T d1lu4a_          78 NLNFTNLNDADGVIWARYNVPWQPAFVFYRADG----TSTFVNNPTA-------AMSQDELSGRVAAL  134 (134)
T ss_dssp             TCCSEEEECTTSHHHHHTTCCSSSEEEEECTTS----CEEEECCSSS-------CCCHHHHHHHHHHC
T ss_pred             ccccceeeCchHHHHHHcCCCcCCEEEEEeCCC----eEEEEeccCC-------CCCHHHHHHHHHcC
Confidence            678999999999999999999999999999999    5777543211       12466888888765

>d1zzoa1 c.47.1.10 (A:45-178) Lipoprotein DsbF {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Lipoprotein DsbF
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.68  E-value=1.7e-08  Score=65.03  Aligned_cols=55  Identities=13%  Similarity=0.271  Sum_probs=44.4

Q ss_pred             hhhcceeEEEeChhhHHHHhCCccCceEEEEecCCCCCeeEEE-eeecCCCCCCCCCCCcHHHHHHHHHHH
Q 034345            6 YLFLMWLITLFQSQDVARDFGAACTPEFFLFKKDGRRPFQLVY-HGQFDDSRPSNNLPVTGRDIRLAIECV   75 (97)
Q Consensus         6 ~~~~~fpvL~D~~q~va~a~gA~~TPe~fvld~~g~~~~~l~Y-~G~IDd~~~~~~~~~t~~~L~~Ai~al   75 (97)
                      +....||++.|+++++++.||+..+|+.|+||++|+    ++| +|+++           ...|+++|++|
T Consensus        78 ~~~~~~~~l~D~~~~~~~~~~v~~~P~~~iiD~~G~----i~~~~g~~~-----------~~~l~~~i~~L  133 (134)
T d1zzoa1          78 YPVKTFTQLADTDGSVWANFGVTQQPAYAFVDPHGN----VDVVRGRMS-----------QDELTRRVTAL  133 (134)
T ss_dssp             TTCTTSEEEECTTCHHHHHTTCCSSSEEEEECTTCC----EEEEESCCC-----------HHHHHHHHHHH
T ss_pred             cCCcceeEEeeccchHHHhcCCCccCeEEEECCCCe----EEEEECCCC-----------HHHHHHHHHhh
Confidence            333469999999999999999999999999999994    544 56543           34788888876

>d1qmva_ c.47.1.10 (A:) Thioredoxin peroxidase 2 (thioredoxin peroxidase B, 2-cys peroxiredoxin) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thioredoxin peroxidase 2 (thioredoxin peroxidase B, 2-cys peroxiredoxin)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.48  E-value=6.2e-08  Score=68.15  Aligned_cols=77  Identities=12%  Similarity=0.093  Sum_probs=52.2

Q ss_pred             hcceeEEEeChhhHHHHhCCcc------CceEEEEecCCCCCeeEEEeeecCCCCCCCCCCCcHHHHHHHHHHHHcCCCC
Q 034345            8 FLMWLITLFQSQDVARDFGAAC------TPEFFLFKKDGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECVLSGQPV   81 (97)
Q Consensus         8 ~~~fpvL~D~~q~va~a~gA~~------TPe~fvld~~g~~~~~l~Y~G~IDd~~~~~~~~~t~~~L~~Ai~alLaG~~v   81 (97)
                      .++||+|.|++++|+++||+..      .+..||||++|    +++|.-.-+...     .....++-++|++|..-..-
T Consensus        97 ~~~fpll~D~~~~va~~ygv~~~~~g~~~R~tfiID~~g----~Ir~~~~~~~~~-----~r~~~E~lr~l~alq~~~~~  167 (197)
T d1qmva_          97 PLNIPLLADVTRRLSEDYGVLKTDEGIAYRGLFIIDGKG----VLRQITVNDLPV-----GRSVDEALRLVQAFQYTDEH  167 (197)
T ss_dssp             SCSSCEEECTTCHHHHHTTCEETTTTEECEEEEEECTTS----BEEEEEEECTTB-----CCCHHHHHHHHHHHHHHHHH
T ss_pred             CCccceEeccchHHHHHhCCCcccCCeeeEEEEEECCCC----cEEEEEecCCCc-----ccCHHHHHHHHHhhcccccc
Confidence            5899999999999999999864      46699999999    677653222221     12355677778777532111


Q ss_pred             CCCCCCceeecCCC
Q 034345           82 SSNQKPSIKWHPQT   95 (97)
Q Consensus        82 ~~~~t~~IKw~~~~   95 (97)
                      .  .--+++|++|+
T Consensus       168 g--~~cp~~W~pG~  179 (197)
T d1qmva_         168 G--EVCPAGWKPGS  179 (197)
T ss_dssp             C--CBBCTTCCTTS
T ss_pred             C--cCcCCCCCCCC
Confidence            1  11238999886

>d2bmxa1 c.47.1.10 (A:2-170) Alkyl hydroperoxide reductase AhpC {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Alkyl hydroperoxide reductase AhpC
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.48  E-value=2.9e-07  Score=61.85  Aligned_cols=60  Identities=7%  Similarity=0.120  Sum_probs=45.1

Q ss_pred             hcceeEEEeChhhHHHHhCC-----ccCceEEEEecCCCCCeeEEEeeecCCCCCCCCCCCcHHHHHHHHHHHH
Q 034345            8 FLMWLITLFQSQDVARDFGA-----ACTPEFFLFKKDGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECVL   76 (97)
Q Consensus         8 ~~~fpvL~D~~q~va~a~gA-----~~TPe~fvld~~g~~~~~l~Y~G~IDd~~~~~~~~~t~~~L~~Ai~alL   76 (97)
                      .++||+|.|++++++++||.     ...|..||||++|    +++|.-.-+...  .   ....++-.+|++|-
T Consensus       104 ~~~f~ll~D~~~~v~~~ygv~~~~~~~~r~~fvID~~G----~I~~~~~~~~~~--~---~~~~evl~~l~alq  168 (169)
T d2bmxa1         104 TLPFPMLSDIKRELSQAAGVLNADGVADRVTFIVDPNN----EIQFVSATAGSV--G---RNVDEVLRVLDALQ  168 (169)
T ss_dssp             GCCSCEEECTTSHHHHHHTCBCTTSSBCEEEEEECTTS----BEEEEEEECTTC--C---CCHHHHHHHHHHHH
T ss_pred             cceEEEEeccHHHHHHHcCCCccCCccceeEEEEcCCC----EEEEEEEcCCCC--C---CCHHHHHHHHHHhc
Confidence            58999999999999999997     6889999999999    688774423221  1   12346777777663

>d1z5ye1 c.47.1.10 (E:49-184) Thioredoxin-like protein CcmG (CycY, DsbE) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thioredoxin-like protein CcmG (CycY, DsbE)
species: Escherichia coli [TaxId: 562]

Probab=98.45  E-value=1.5e-07  Score=60.78  Aligned_cols=43  Identities=21%  Similarity=0.263  Sum_probs=36.2

Q ss_pred             cceeEEEeChhhHHHHhCCccCceEEEEecCCCCCeeEEEeeecC
Q 034345            9 LMWLITLFQSQDVARDFGAACTPEFFLFKKDGRRPFQLVYHGQFD   53 (97)
Q Consensus         9 ~~fpvL~D~~q~va~a~gA~~TPe~fvld~~g~~~~~l~Y~G~ID   53 (97)
                      ..++++.|.++.+++.||+..+|+.||||++|+  ++-++.|.++
T Consensus        74 ~~~~~~~d~~~~~~~~~~v~~~P~~~liD~~G~--i~~~~~G~~~  116 (136)
T d1z5ye1          74 PYALSLFDGDGMLGLDLGVYGAPETFLIDGNGI--IRYRHAGDLN  116 (136)
T ss_dssp             CCSEEEEESSCHHHHHHTCCSBSEEEEECTTSC--EEEEEESCCC
T ss_pred             ccceeecccchhHHHhcccCCcceEEEEcCCCE--EEEEEEcCCC
Confidence            445688999999999999999999999999995  5556777653

>d2cx4a1 c.47.1.10 (A:4-163) Bacterioferritin comigratory protein {Archaeon Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Bacterioferritin comigratory protein
species: Archaeon Aeropyrum pernix [TaxId: 56636]

Probab=98.40  E-value=4.2e-07  Score=59.71  Aligned_cols=44  Identities=18%  Similarity=0.301  Sum_probs=38.0

Q ss_pred             hcceeEEEeChhhHHHHhCC----------ccCceEEEEecCCCCCeeEEEeeecCCC
Q 034345            8 FLMWLITLFQSQDVARDFGA----------ACTPEFFLFKKDGRRPFQLVYHGQFDDS   55 (97)
Q Consensus         8 ~~~fpvL~D~~q~va~a~gA----------~~TPe~fvld~~g~~~~~l~Y~G~IDd~   55 (97)
                      .++||++.|.++.++++||+          ..+|.+||||++|    +++|+...++.
T Consensus        86 ~~~~~~l~D~~~~~~~~~gv~~~~~~~~~~~~~~~~flId~~G----~I~~~~~~~~~  139 (160)
T d2cx4a1          86 RLAFNLLSDYNREVIKLYNVYHEDLKGLKMVAKRAVFIVKPDG----TVAYKWVTDNP  139 (160)
T ss_dssp             TCSSEEEECTTSHHHHHTTCEEEEETTEEEEECCEEEEECTTS----BEEEEEECSST
T ss_pred             eeeEEEeecCCcchHHHcCccccccccccccceeeEEEEcCCC----EEEEEEEeCCC
Confidence            57899999999999999997          3579999999999    78888765544

>d1knga_ c.47.1.10 (A:) Thioredoxin-like protein CcmG (CycY, DsbE) {Bradyrhizobium japonicum [TaxId: 375]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thioredoxin-like protein CcmG (CycY, DsbE)
species: Bradyrhizobium japonicum [TaxId: 375]

Probab=98.38  E-value=2.6e-07  Score=60.17  Aligned_cols=42  Identities=14%  Similarity=0.267  Sum_probs=33.7

Q ss_pred             ceeEEEeChhhHHHHhCCccCceEEEEecCCCCCeeEEEeeecC
Q 034345           10 MWLITLFQSQDVARDFGAACTPEFFLFKKDGRRPFQLVYHGQFD   53 (97)
Q Consensus        10 ~fpvL~D~~q~va~a~gA~~TPe~fvld~~g~~~~~l~Y~G~ID   53 (97)
                      .++++.|+++++++.||...+|++||||++|+  +.-++.|.++
T Consensus        87 ~~~~~~d~~~~~~~~~~v~~~P~~~liD~~G~--i~~~~~G~~~  128 (144)
T d1knga_          87 FGRVGVDANGRASIEWGVYGVPETFVVGREGT--IVYKLVGPIT  128 (144)
T ss_dssp             CSEEEEETTSHHHHHTTCCSSCEEEEECTTSB--EEEEEESCCC
T ss_pred             cccccccccchhhhhcCccccceEEEEcCCCe--EEEEEeCCCC
Confidence            34589999999999999999999999999994  3334445543

>d2h01a1 c.47.1.10 (A:2-171) Thioredoxin peroxidase 2 (thioredoxin peroxidase B, 2-cys peroxiredoxin) {Plasmodium yoelii [TaxId: 5861]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thioredoxin peroxidase 2 (thioredoxin peroxidase B, 2-cys peroxiredoxin)
species: Plasmodium yoelii [TaxId: 5861]

Probab=98.38  E-value=1.7e-07  Score=63.87  Aligned_cols=75  Identities=15%  Similarity=0.180  Sum_probs=52.7

Q ss_pred             hhcceeEEEeChhhHHHHhCCc-----cCceEEEEecCCCCCeeEEEe--eecCCCCCCCCCCCcHHHHHHHHHHHHcCC
Q 034345            7 LFLMWLITLFQSQDVARDFGAA-----CTPEFFLFKKDGRRPFQLVYH--GQFDDSRPSNNLPVTGRDIRLAIECVLSGQ   79 (97)
Q Consensus         7 ~~~~fpvL~D~~q~va~a~gA~-----~TPe~fvld~~g~~~~~l~Y~--G~IDd~~~~~~~~~t~~~L~~Ai~alLaG~   79 (97)
                      ..++||+|.|.+++++++||+.     ..+.+||||++|    +++|.  +.+...+       ....+-+||++|-..+
T Consensus        89 ~~~~f~llsD~~~~~~~~ygv~~~~~~~~R~tfiId~~G----~I~~~~~~~~~~~~-------~~~eil~~l~~lq~~~  157 (170)
T d2h01a1          89 GNIKHTLISDISKSIARSYDVLFNESVALRAFVLIDKQG----VVQHLLVNNLALGR-------SVDEILRLIDALQHHE  157 (170)
T ss_dssp             CSCSSEEEECTTSHHHHHTTCEETTTEECCEEEEECTTS----BEEEEEEGGGSSGG-------GHHHHHHHHHHHHHHH
T ss_pred             cccCCceeEcCccHHHHHhCCccccccceeeeEEEcCCC----eEEEEEEecCCCCC-------CHHHHHHHHHHhhhhh
Confidence            3589999999999999999984     458999999999    56554  3332221       2345777888876554


Q ss_pred             CCCCCCCCceeecCC
Q 034345           80 PVSSNQKPSIKWHPQ   94 (97)
Q Consensus        80 ~v~~~~t~~IKw~~~   94 (97)
                      .-....  +++|++|
T Consensus       158 ~~~~~~--~~~w~~g  170 (170)
T d2h01a1         158 KYGDVC--PANWQKG  170 (170)
T ss_dssp             HHCCCC--CSSCCCC
T ss_pred             hcCCcc--CCCCCCC
Confidence            333322  4899986

>d1uula_ c.47.1.10 (A:) Tryparedoxin peroxidase (thioredoxin peroxidase homologue) {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Tryparedoxin peroxidase (thioredoxin peroxidase homologue)
species: Trypanosoma cruzi [TaxId: 5693]

Probab=98.36  E-value=5.1e-08  Score=68.38  Aligned_cols=75  Identities=8%  Similarity=0.108  Sum_probs=49.4

Q ss_pred             hcceeEEEeChhhHHHHhCC------ccCceEEEEecCCCCCeeEEEe--eecCCCCCCCCCCCcHHHHHHHHHHHHcCC
Q 034345            8 FLMWLITLFQSQDVARDFGA------ACTPEFFLFKKDGRRPFQLVYH--GQFDDSRPSNNLPVTGRDIRLAIECVLSGQ   79 (97)
Q Consensus         8 ~~~fpvL~D~~q~va~a~gA------~~TPe~fvld~~g~~~~~l~Y~--G~IDd~~~~~~~~~t~~~L~~Ai~alLaG~   79 (97)
                      .++||+|.|++++|+++||+      ...|.+||||++|    +++|.  +.++-.       ....++-++|++|-.-+
T Consensus        96 ~l~fpllsD~~~~v~~~ygv~~~~~~~~~R~tfvID~~G----~I~~~~~~~~~~~-------r~~~E~Lr~l~alQ~~~  164 (194)
T d1uula_          96 QMNIPILADKTKCIMKSYGVLKEEDGVAYRGLFIIDPKQ----NLRQITVNDLPVG-------RDVDEALRLVKAFQFVE  164 (194)
T ss_dssp             SCSSCEEECTTCHHHHHHTCEETTTTEECEEEEEECTTS----BEEEEEEECTTBC-------CCHHHHHHHHHHHHHHH
T ss_pred             CCCcceeeCCcchHHHHcCCeeccCCceEEEEEEECCCC----eEEEEEEecCCCC-------cCHHHHHHHHHHhhhHh
Confidence            58999999999999999998      4578899999999    57665  322221       12445666666654211


Q ss_pred             CCCCCCCCceeecCCC
Q 034345           80 PVSSNQKPSIKWHPQT   95 (97)
Q Consensus        80 ~v~~~~t~~IKw~~~~   95 (97)
                      .-.  .--+++|++|+
T Consensus       165 ~~~--~~cp~~W~~g~  178 (194)
T d1uula_         165 KHG--EVCPANWKPGD  178 (194)
T ss_dssp             HHS--CBBCTTCCTTS
T ss_pred             hcC--CCcCCCCCCCC
Confidence            000  11137787764

>d1we0a1 c.47.1.10 (A:1-166) Alkyl hydroperoxide reductase AhpC {Amphibacillus xylanus [TaxId: 1449]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Alkyl hydroperoxide reductase AhpC
species: Amphibacillus xylanus [TaxId: 1449]

Probab=98.30  E-value=1e-06  Score=59.74  Aligned_cols=38  Identities=18%  Similarity=0.286  Sum_probs=34.0

Q ss_pred             hcceeEEEeChhhHHHHhCCc------cCceEEEEecCCCCCeeEEEe
Q 034345            8 FLMWLITLFQSQDVARDFGAA------CTPEFFLFKKDGRRPFQLVYH   49 (97)
Q Consensus         8 ~~~fpvL~D~~q~va~a~gA~------~TPe~fvld~~g~~~~~l~Y~   49 (97)
                      .++||+|.|++++++++||+.      .+|.+||||++|    +++|.
T Consensus        91 ~~~fpll~D~~~~v~~~ygv~~~~~~~~~r~tfvID~~G----~I~~~  134 (166)
T d1we0a1          91 SIEYIMIGDPSQTISRQFDVLNEETGLADRGTFIIDPDG----VIQAI  134 (166)
T ss_dssp             TCCSEEEECTTCHHHHHTTCEETTTTEECEEEEEECTTS----BEEEE
T ss_pred             ccccccccCcccHHHHHhCCCccccCcccceEEEECCCC----cEEEE
Confidence            589999999999999999974      678899999999    67776

>d2a4va1 c.47.1.10 (A:59-214) Peroxiredoxin dot5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Peroxiredoxin dot5
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.18  E-value=8.3e-07  Score=59.23  Aligned_cols=40  Identities=20%  Similarity=0.189  Sum_probs=31.8

Q ss_pred             hhcceeEEEeChhhHHHHhCCccCce-----EEEEecCCCCCeeEEEee
Q 034345            7 LFLMWLITLFQSQDVARDFGAACTPE-----FFLFKKDGRRPFQLVYHG   50 (97)
Q Consensus         7 ~~~~fpvL~D~~q~va~a~gA~~TPe-----~fvld~~g~~~~~l~Y~G   50 (97)
                      ..++||+|.|++++++++||+..+|.     .++|+.+|    +++|+.
T Consensus        87 ~~l~f~~L~D~~~~v~~~ygv~~~~~~~~~r~~~i~~dg----~i~~~~  131 (156)
T d2a4va1          87 QNLPYHLLSDPKREFIGLLGAKKTPLSGSIRSHFIFVDG----KLKFKR  131 (156)
T ss_dssp             HTCSSEEEECTTCHHHHHHTCBSSSSSCBCCEEEEEETT----EEEEEE
T ss_pred             cCccceeccchHHHHHHHcCCCccccCCeeEEEEEEECC----eEEEEE
Confidence            35899999999999999999998885     34555788    555554

>d1e2ya_ c.47.1.10 (A:) Tryparedoxin peroxidase (thioredoxin peroxidase homologue) {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Tryparedoxin peroxidase (thioredoxin peroxidase homologue)
species: Crithidia fasciculata [TaxId: 5656]

Probab=98.13  E-value=3.4e-06  Score=56.27  Aligned_cols=59  Identities=14%  Similarity=0.153  Sum_probs=42.4

Q ss_pred             hcceeEEEeChhhHHHHhCC------ccCceEEEEecCCCCCeeEEEeeecCCCCCCCCCCCcHHHHHHHHHHH
Q 034345            8 FLMWLITLFQSQDVARDFGA------ACTPEFFLFKKDGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECV   75 (97)
Q Consensus         8 ~~~fpvL~D~~q~va~a~gA------~~TPe~fvld~~g~~~~~l~Y~G~IDd~~~~~~~~~t~~~L~~Ai~al   75 (97)
                      .++||++.|+++.++++||+      ..+|.+||||++|    +|+|.-.-+....+     ...++-++|++|
T Consensus        96 ~~~~~~l~d~~~~~~~~y~v~~~~~g~~~r~tfvID~~G----~Ir~~~~~~~~~~~-----~~~evL~~l~al  160 (167)
T d1e2ya_          96 PMAIPMLADKTKAIARAYGVLDEDSGVAYRGVFIIDPNG----KLRQIIINDMPIGR-----NVEEVIRLVEAL  160 (167)
T ss_dssp             CCSSCEEECTTCHHHHHHTCEETTTTEECEEEEEECTTS----BEEEEEEECTTBCC-----CHHHHHHHHHHH
T ss_pred             cccccccccchhHHHHHcCCCcccCCCceeEEEEECCCC----EEEEEEEcCCCCCC-----CHHHHHHHHHHH
Confidence            47899999999999999998      3689999999999    67776432322111     133555666665

>d1n8ja_ c.47.1.10 (A:) Alkyl hydroperoxide reductase AhpC {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Alkyl hydroperoxide reductase AhpC
species: Salmonella typhimurium [TaxId: 90371]

Probab=98.13  E-value=6.2e-06  Score=57.21  Aligned_cols=39  Identities=10%  Similarity=0.146  Sum_probs=34.0

Q ss_pred             hhcceeEEEeChhhHHHHhCCc------cCceEEEEecCCCCCeeEEEe
Q 034345            7 LFLMWLITLFQSQDVARDFGAA------CTPEFFLFKKDGRRPFQLVYH   49 (97)
Q Consensus         7 ~~~~fpvL~D~~q~va~a~gA~------~TPe~fvld~~g~~~~~l~Y~   49 (97)
                      ..++||+|.|++++++++||.-      ..|.+||||++|    +++|.
T Consensus        89 ~~~~fpllsD~~~~v~~~yGv~~~~~g~~~r~tfiID~~G----~Ir~~  133 (186)
T d1n8ja_          89 AKIKYAMIGDPTGALTRNFDNMREDEGLADRATFVVDPQG----IIQAI  133 (186)
T ss_dssp             GGCCSEEEECTTSHHHHHTTCEETTTTEECEEEEEECTTS----BEEEE
T ss_pred             ccccccccccHHHHHHHHhCCCcccCCcceeeEEEECchh----eEEEE
Confidence            4689999999999999999974      568899999999    56665

>d1xvwa1 c.47.1.10 (A:1-153) Putative peroxiredoxin Rv2238c/MT2298 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Putative peroxiredoxin Rv2238c/MT2298
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.12  E-value=3.3e-06  Score=55.22  Aligned_cols=62  Identities=10%  Similarity=0.062  Sum_probs=45.8

Q ss_pred             hhcceeEEEeC--hhhHHHHhCCccC------ceEEEEecCCCCCeeEEEeeecCCCCCCCCCCCcHHHHHHHHHHHHc
Q 034345            7 LFLMWLITLFQ--SQDVARDFGAACT------PEFFLFKKDGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECVLS   77 (97)
Q Consensus         7 ~~~~fpvL~D~--~q~va~a~gA~~T------Pe~fvld~~g~~~~~l~Y~G~IDd~~~~~~~~~t~~~L~~Ai~alLa   77 (97)
                      ..++||++.|.  +++++++||+..+      |.+||||++|    +|+|...-+...     .....++.+||++|.|
T Consensus        84 ~~~~~~~l~~~~~~~~~~~~ygv~~~~~g~~~r~tfvID~~G----~I~~~~~~~~~~-----~~~~~~~~~~L~aL~a  153 (153)
T d1xvwa1          84 SGFTFPLLSDFWPHGAVSQAYGVFNEQAGIANRGTFVVDRSG----IIRFAEMKQPGE-----VRDQRLWTDALAALTA  153 (153)
T ss_dssp             HTCCSCEEECTTTTTHHHHHTTCEETTTTEECSEEEEECTTS----BEEEEEECCTTC-----CCCHHHHHHHHHHTCC
T ss_pred             hccceeEEecccccchhHHHhhhhhhccCceeeeEEEECCCC----EEEEEEEeCCCc-----ccCHHHHHHHHHhhcC
Confidence            46789999875  6889999997543      4689999999    788887533321     2235678899988764

>d2zcta1 c.47.1.10 (A:6-242) Peroxiredoxin {Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Peroxiredoxin
species: Aeropyrum pernix [TaxId: 56636]

Probab=98.07  E-value=4.5e-06  Score=60.21  Aligned_cols=59  Identities=14%  Similarity=0.091  Sum_probs=43.7

Q ss_pred             hcceeEEEeChhhHHHHhCC-------ccCceEEEEecCCCCCeeEEEe--eecCCCCCCCCCCCcHHHHHHHHHHHHc
Q 034345            8 FLMWLITLFQSQDVARDFGA-------ACTPEFFLFKKDGRRPFQLVYH--GQFDDSRPSNNLPVTGRDIRLAIECVLS   77 (97)
Q Consensus         8 ~~~fpvL~D~~q~va~a~gA-------~~TPe~fvld~~g~~~~~l~Y~--G~IDd~~~~~~~~~t~~~L~~Ai~alLa   77 (97)
                      .++||+|.|.++++|++||.       ...|.+||||++|    +|+|.  +...-.       ....++-++|++|--
T Consensus        91 ~l~fpllsD~~~~vak~yGv~~~~~~~~~~RatFIIDpdG----~Ir~~~~~~~~~g-------R~~dEiLr~l~aLQ~  158 (237)
T d2zcta1          91 RIPFPIIADPQGTVARRLGLLHAESATHTVRGVFIVDARG----VIRTMLYYPMELG-------RLVDEILRIVKALKL  158 (237)
T ss_dssp             CCCSCEEECGGGHHHHHTTCC----CCTTCCEEEEECTTS----BEEEEEECCTTBC-------CCHHHHHHHHHHHHH
T ss_pred             ccccccccCcchHHHHHcCCccccccccceeeeEEECCCC----EEEEEEEeCCCCC-------CCHHHHHHHHHHHhh
Confidence            58999999999999999997       5689999999999    45554  322111       124566677877653

>d1prxa_ c.47.1.10 (A:) 1-Cys peroxiredoxin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: 1-Cys peroxiredoxin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.98  E-value=3.2e-06  Score=60.15  Aligned_cols=77  Identities=13%  Similarity=0.122  Sum_probs=50.4

Q ss_pred             hcceeEEEeChhhHHHHhCCc------------cCceEEEEecCCCCCeeEEEeeecCCCCCCCCCCCcHHHHHHHHHHH
Q 034345            8 FLMWLITLFQSQDVARDFGAA------------CTPEFFLFKKDGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECV   75 (97)
Q Consensus         8 ~~~fpvL~D~~q~va~a~gA~------------~TPe~fvld~~g~~~~~l~Y~G~IDd~~~~~~~~~t~~~L~~Ai~al   75 (97)
                      .++||+|.|.+++++++||+.            ..+.+||||++|    +++|.=--+....     ....++-++|++|
T Consensus        93 ~l~fpllsD~~~~va~~ygv~~~~~~~~~~~~~~~RatFIID~~g----~Ir~~~~~~~~~g-----R~~dEiLr~l~al  163 (220)
T d1prxa_          93 KLPFPIIDDRNRELAILLGMLDPAEKDEKGMPVTARVVFVFGPDK----KLKLSILYPATTG-----RNFDEILRVVISL  163 (220)
T ss_dssp             CCSSCEEECTTCHHHHHTTSSCSCTTCSSSCCTTCCEEEEECTTS----BEEEEEECCTTBC-----CCHHHHHHHHHHH
T ss_pred             CcccccccCcccHHHHHhCCccccccccccceeeeEEEEEEcCcc----ceeEEEEecCCcc-----cchHHHHHHHHHH
Confidence            489999999999999999976            447799999999    6777643233311     1244566677776


Q ss_pred             HcCCCCCCCCCCceeecCCC
Q 034345           76 LSGQPVSSNQKPSIKWHPQT   95 (97)
Q Consensus        76 LaG~~v~~~~t~~IKw~~~~   95 (97)
                      -....-.  .--+++|++|+
T Consensus       164 q~~~~~~--~~~PanW~pGd  181 (220)
T d1prxa_         164 QLTAEKR--VATPVDWKDGD  181 (220)
T ss_dssp             HHHHHHC--EEBCTTCCTTS
T ss_pred             hhhhcCC--cCcCCCCCCCC
Confidence            5432111  11126777664

>d1jfua_ c.47.1.10 (A:) Membrane-anchored thioredoxin-like protein TlpA, soluble domain {Bradyrhizobium japonicum [TaxId: 375]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Membrane-anchored thioredoxin-like protein TlpA, soluble domain
species: Bradyrhizobium japonicum [TaxId: 375]

Probab=97.97  E-value=7.5e-06  Score=54.67  Aligned_cols=55  Identities=18%  Similarity=0.036  Sum_probs=41.7

Q ss_pred             eeEEEeChhhHHHHhC----CccCceEEEEecCCCCCeeEEEeeecCCCCCCCCCCCcHHHHHHHHHHHH
Q 034345           11 WLITLFQSQDVARDFG----AACTPEFFLFKKDGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECVL   76 (97)
Q Consensus        11 fpvL~D~~q~va~a~g----A~~TPe~fvld~~g~~~~~l~Y~G~IDd~~~~~~~~~t~~~L~~Ai~alL   76 (97)
                      ++++.|....+++.|+    +...|+.||||++|+  ++-+|.|.+|.+         ...+.+.|++++
T Consensus       117 ~~~~~d~~~~~~~~~~~~~~v~~~P~~~lID~~G~--I~~~~~G~~~~~---------~~e~~~~l~al~  175 (176)
T d1jfua_         117 LGYFNDQKAKVFQDLKAIGRALGMPTSVLVDPQGC--EIATIAGPAEWA---------SEDALKLIRAAT  175 (176)
T ss_dssp             TCCEECTTCHHHHHHHTTTCCSSSSEEEEECTTSB--EEEEEESCCCTT---------SHHHHHHHHHHH
T ss_pred             eeeeecchhHHHHHHhhhccCCCCCeEEEEcCCCE--EEEEEECCCCCC---------hHHHHHHHHHhc
Confidence            3488899988887764    566899999999994  444677998765         236777888775

>d1zyea1 c.47.1.10 (A:6-163) Peroxiredoxin-3 (AOP-1, SP-22) {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Peroxiredoxin-3 (AOP-1, SP-22)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=97.87  E-value=2.2e-05  Score=52.32  Aligned_cols=38  Identities=13%  Similarity=0.281  Sum_probs=33.4

Q ss_pred             hcceeEEEeChhhHHHHhCCccCc------eEEEEecCCCCCeeEEEe
Q 034345            8 FLMWLITLFQSQDVARDFGAACTP------EFFLFKKDGRRPFQLVYH   49 (97)
Q Consensus         8 ~~~fpvL~D~~q~va~a~gA~~TP------e~fvld~~g~~~~~l~Y~   49 (97)
                      .++||+|.|..+.++++||+...+      ..||||++|    +++|.
T Consensus        89 ~~~f~llsD~~~~~~~~ygv~~~~~g~~~R~tfvID~~G----~I~~~  132 (158)
T d1zyea1          89 HMNIALLSDLTKQISRDYGVLLEGPGLALRGLFIIDPNG----VIKHL  132 (158)
T ss_dssp             SCSSEEEECTTSHHHHHTTCEETTTTEECEEEEEECTTS----BEEEE
T ss_pred             ccccccccccccHHHHHHHhccccCCccccEEEEECCCC----EEEEE
Confidence            679999999999999999988655      499999999    67775

>d1zofa1 c.47.1.10 (A:1-170) Thioredoxin reductase TsaA {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thioredoxin reductase TsaA
species: Helicobacter pylori [TaxId: 210]

Probab=97.83  E-value=1.3e-05  Score=54.16  Aligned_cols=38  Identities=13%  Similarity=0.204  Sum_probs=33.9

Q ss_pred             hcceeEEEeChhhHHHHhCCc-----cCceEEEEecCCCCCeeEEEe
Q 034345            8 FLMWLITLFQSQDVARDFGAA-----CTPEFFLFKKDGRRPFQLVYH   49 (97)
Q Consensus         8 ~~~fpvL~D~~q~va~a~gA~-----~TPe~fvld~~g~~~~~l~Y~   49 (97)
                      .++||+|.|.+++++++||..     ..|..||||++|    +++|.
T Consensus        96 ~~~~~~l~D~~~~v~~~ygv~~~~~~~~r~tfvID~~G----~I~~~  138 (170)
T d1zofa1          96 QVSFPMVADITKSISRDYDVLFEEAIALRGAFLIDKNM----KVRHA  138 (170)
T ss_dssp             CCSSCEEECTTSHHHHHTTCEETTTEECEEEEEEETTT----EEEEE
T ss_pred             CcccccccccccHHHHHcCCCccccceeEEEEEEcCCC----eEEEE
Confidence            579999999999999999974     568899999999    78875

>d1qxha_ c.47.1.10 (A:) Thiol peroxidase Tpx {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thiol peroxidase Tpx
species: Escherichia coli [TaxId: 562]

Probab=97.62  E-value=4.1e-05  Score=51.04  Aligned_cols=44  Identities=16%  Similarity=0.323  Sum_probs=36.3

Q ss_pred             hcceeEEEe--ChhhHHHHhCCc---------cCceEEEEecCCCCCeeEEEeeecCCC
Q 034345            8 FLMWLITLF--QSQDVARDFGAA---------CTPEFFLFKKDGRRPFQLVYHGQFDDS   55 (97)
Q Consensus         8 ~~~fpvL~D--~~q~va~a~gA~---------~TPe~fvld~~g~~~~~l~Y~G~IDd~   55 (97)
                      .++||++.|  .+++++++||..         .+|.+||||++|    +|+|.+..|+.
T Consensus        98 ~~~~~~~~~~d~~~~~~~~ygv~~~~~~~~g~~~ra~fvID~~G----~I~y~~~~~~~  152 (164)
T d1qxha_          98 GLNNVITLSTFRNAEFLQAYGVAIADGPLKGLAARAVVVIDEND----NVIFSQLVDEI  152 (164)
T ss_dssp             TCTTEEEEECTTCHHHHHHTTCBBCSSTTTTSBCCEEEEECTTS----BEEEEEECSBT
T ss_pred             CCCcceeeccccchhhHHhcCeEeecCcccCcccCEEEEEcCCC----EEEEEEEcCCC
Confidence            467777765  489999999974         357899999999    89999998876

>d1xvqa_ c.47.1.10 (A:) Thiol peroxidase Tpx {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thiol peroxidase Tpx
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.50  E-value=0.00013  Score=48.51  Aligned_cols=60  Identities=10%  Similarity=0.155  Sum_probs=41.2

Q ss_pred             hcceeEE-EeChhhHHHHhCCc---------cCceEEEEecCCCCCeeEEEeeecCCCCCCCCCCCcHHHHHHHHHHHHc
Q 034345            8 FLMWLIT-LFQSQDVARDFGAA---------CTPEFFLFKKDGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECVLS   77 (97)
Q Consensus         8 ~~~fpvL-~D~~q~va~a~gA~---------~TPe~fvld~~g~~~~~l~Y~G~IDd~~~~~~~~~t~~~L~~Ai~alLa   77 (97)
                      .+.|+++ -|..+.+++.||..         .+|++||||++|    +++|....++-.. .      .+.+.+|++|.+
T Consensus        96 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~ra~fvID~~G----~I~y~~~~~~~~~-~------~~~d~il~aL~a  164 (166)
T d1xvqa_          96 GTENVMPASAFRDSFGEDYGVTIADGPMAGLLARAIVVIGADG----NVAYTELVPEIAQ-E------PNYEAALAALGA  164 (166)
T ss_dssp             ---CEEEEECTTSSHHHHTTCBBCSSTTTTSBCSEEEEECTTS----BEEEEEECSBTTC-C------CCHHHHHHHHHH
T ss_pred             CCcccccccchhHHHHHHhCeeeccCcccCceeeEEEEEeCCC----EEEEEEEcCCCCC-C------CCHHHHHHHHHh
Confidence            3456654 46778999999864         468999999999    8999988776421 1      135667776665


Q ss_pred             C
Q 034345           78 G   78 (97)
Q Consensus        78 G   78 (97)
                      +
T Consensus       165 ~  165 (166)
T d1xvqa_         165 T  165 (166)
T ss_dssp             T
T ss_pred             c
Confidence            4

>d1xcca_ c.47.1.10 (A:) 1-Cys peroxiredoxin {Plasmodium yoelii yoelii [TaxId: 73239]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: 1-Cys peroxiredoxin
species: Plasmodium yoelii yoelii [TaxId: 73239]

Probab=97.23  E-value=0.00043  Score=48.92  Aligned_cols=60  Identities=8%  Similarity=0.079  Sum_probs=42.3

Q ss_pred             hcceeEEEeChhhHHHHhCCc------------cCceEEEEecCCCCCeeEEEeeecCCCCCCCCCCCcHHHHHHHHHHH
Q 034345            8 FLMWLITLFQSQDVARDFGAA------------CTPEFFLFKKDGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECV   75 (97)
Q Consensus         8 ~~~fpvL~D~~q~va~a~gA~------------~TPe~fvld~~g~~~~~l~Y~G~IDd~~~~~~~~~t~~~L~~Ai~al   75 (97)
                      .++||+|-|++++++++||.-            .--.+||||++|    +++|.=--+-..     .....++-++|++|
T Consensus        93 ~l~fpllsD~~~~va~~ygv~~~~~~~~~~~~~~~R~tFiIDp~g----~Ir~~~~~~~~~-----gr~~~EiLr~l~aL  163 (219)
T d1xcca_          93 KWEIPIVCDESRELANKLKIMDEQEKDITGLPLTCRCLFFISPEK----KIKATVLYPATT-----GRNAHEILRVLKSL  163 (219)
T ss_dssp             CCCCCEEECTTSHHHHHHTCEEEEEECTTSCEEECEEEEEECTTS----BEEEEEEECTTB-----CCCHHHHHHHHHHH
T ss_pred             CCCcccccccccHHHHHhCCcccccccCcccceeeeeeEEEcCcc----eEEEEEEeCCCc-----ccCHHHHHHHHHHH
Confidence            589999999999999999973            235899999999    566652212221     11244666677776


Q ss_pred             H
Q 034345           76 L   76 (97)
Q Consensus        76 L   76 (97)
                      -
T Consensus       164 Q  164 (219)
T d1xcca_         164 Q  164 (219)
T ss_dssp             H
T ss_pred             H
Confidence            5

>d1psqa_ c.47.1.10 (A:) Probable thiol peroxidase PsaD {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Probable thiol peroxidase PsaD
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=97.16  E-value=0.00067  Score=44.73  Aligned_cols=44  Identities=20%  Similarity=0.251  Sum_probs=32.3

Q ss_pred             hcceeEEEe--ChhhHHHHhCCcc------CceEEEEecCCCCCeeEEEeeecCCC
Q 034345            8 FLMWLITLF--QSQDVARDFGAAC------TPEFFLFKKDGRRPFQLVYHGQFDDS   55 (97)
Q Consensus         8 ~~~fpvL~D--~~q~va~a~gA~~------TPe~fvld~~g~~~~~l~Y~G~IDd~   55 (97)
                      .+.++.+++  .+..++++||...      .+.+||||++|    +|+|.+..++-
T Consensus        96 ~~~~~~~~~~~~~~~~~~~ygv~~~~~~~~~Ra~fvID~~G----~I~y~~~~~~~  147 (163)
T d1psqa_          96 GLDNAIMLSDYFDHSFGRDYALLINEWHLLARAVFVLDTDN----TIRYVEYVDNI  147 (163)
T ss_dssp             TCTTSEEEECTTTCHHHHHHTCBCTTTCSBCCEEEEECTTC----BEEEEEECSBT
T ss_pred             CCcceeeeccccchhHHHhheeecccccceeEEEEEECCCC----EEEEEEEcCCC
Confidence            345555544  3678999999643      34689999999    89999887754

>d1o8xa_ c.47.1.10 (A:) Tryparedoxin I {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Tryparedoxin I
species: Crithidia fasciculata [TaxId: 5656]

Probab=96.95  E-value=0.00016  Score=46.00  Aligned_cols=39  Identities=13%  Similarity=0.201  Sum_probs=29.9

Q ss_pred             ceeEE-EeChhhHHHHhCCccCceEEEEecC-CCCCeeEEEeee
Q 034345           10 MWLIT-LFQSQDVARDFGAACTPEFFLFKKD-GRRPFQLVYHGQ   51 (97)
Q Consensus        10 ~fpvL-~D~~q~va~a~gA~~TPe~fvld~~-g~~~~~l~Y~G~   51 (97)
                      .+|++ .|.++++++.||+..+|++||||++ |+   .+.++|+
T Consensus        86 ~~~~~~~d~~~~l~~~y~v~~~Pt~~liD~~~G~---Vi~~~~~  126 (144)
T d1o8xa_          86 AVPFAQSEAVQKLSKHFNVESIPTLIGVDADSGD---VVTTRAR  126 (144)
T ss_dssp             ECCGGGHHHHHHHHHHTTCCSSSEEEEEETTTCC---EEESCHH
T ss_pred             ceeeecccchhhHHHHcCCCcCCEEEEEeCCCCE---EEEEech
Confidence            34443 3667899999999999999999998 53   5565555

>d2b7ka1 c.47.1.10 (A:111-279) Thioredoxin-like protein Sco1 (YpmQ), soluble domain {Baker's yeast(Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thioredoxin-like protein Sco1 (YpmQ), soluble domain
species: Baker's yeast(Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.66  E-value=0.0019  Score=40.28  Aligned_cols=43  Identities=12%  Similarity=0.117  Sum_probs=21.0

Q ss_pred             hhcceeEEEeChhhHHHHhCCccCceEEEEecCCCCCeeEEEeee
Q 034345            7 LFLMWLITLFQSQDVARDFGAACTPEFFLFKKDGRRPFQLVYHGQ   51 (97)
Q Consensus         7 ~~~~fpvL~D~~q~va~a~gA~~TPe~fvld~~g~~~~~l~Y~G~   51 (97)
                      ..+..++..+..+.....+....+|..||||++|+  ++-+|.+.
T Consensus       107 ~~~~~~~~~~~~~~~~~~~~i~h~~~~fLID~~G~--vv~~~~~~  149 (169)
T d2b7ka1         107 KKYRVYFSTPPNVKPGQDYLVDHSIFFYLMDPEGQ--FVDALGRN  149 (169)
T ss_dssp             HHTTC--------------CTTTCCCEEEECTTSC--EEEEECTT
T ss_pred             hhhheeeeecccCCcccCceeeccceEEEECCCCe--EEEEECCC
Confidence            34455555666666667777889999999999995  44445444

>d1q98a_ c.47.1.10 (A:) Thiol peroxidase Tpx {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thiol peroxidase Tpx
species: Haemophilus influenzae [TaxId: 727]

Probab=96.54  E-value=0.0024  Score=42.08  Aligned_cols=44  Identities=5%  Similarity=0.101  Sum_probs=32.7

Q ss_pred             hcceeEEEeC--hhhHHHHhCCc---------cCceEEEEecCCCCCeeEEEeeecCCC
Q 034345            8 FLMWLITLFQ--SQDVARDFGAA---------CTPEFFLFKKDGRRPFQLVYHGQFDDS   55 (97)
Q Consensus         8 ~~~fpvL~D~--~q~va~a~gA~---------~TPe~fvld~~g~~~~~l~Y~G~IDd~   55 (97)
                      .+.++.+++.  +..+++.||..         .+|.+||||++|    +|+|....++.
T Consensus        96 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~Ra~fvID~~G----~I~y~~~~~~~  150 (164)
T d1q98a_          96 GIENAKTVSTFRNHALHSQLGVDIQTGPLAGLTSRAVIVLDEQN----NVLHSQLVEEI  150 (164)
T ss_dssp             TCTTEEEEECTTCTHHHHHTTCEECSSTTTTSBCCEEEEECTTS----BEEEEEECSBT
T ss_pred             CCccccccccccchhHHHhhceecccCccccCcccEEEEECCCC----EEEEEEECCCC
Confidence            3444444443  67899999863         358899999999    89999887654

>d2trxa_ c.47.1.1 (A:) Thioredoxin {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Escherichia coli [TaxId: 562]

Probab=96.50  E-value=0.0015  Score=39.67  Aligned_cols=51  Identities=20%  Similarity=0.408  Sum_probs=38.7

Q ss_pred             EEEeChhhHHHHhCCccCceEEEEecCCCCCeeEEEeeecCCCCCCCCCCCcHHHHHHHHHHHHc
Q 034345           13 ITLFQSQDVARDFGAACTPEFFLFKKDGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECVLS   77 (97)
Q Consensus        13 vL~D~~q~va~a~gA~~TPe~fvld~~g~~~~~l~Y~G~IDd~~~~~~~~~t~~~L~~Ai~alLa   77 (97)
                      +-.|+...+++.||...+|+++++ ++|+  ..-+|.|..           +...|...|++.||
T Consensus        58 vd~d~~~~l~~~~~v~~~PT~~~~-~~G~--~v~~~~G~~-----------~~~~l~~~i~~~Ls  108 (108)
T d2trxa_          58 LNIDQNPGTAPKYGIRGIPTLLLF-KNGE--VAATKVGAL-----------SKGQLKEFLDANLA  108 (108)
T ss_dssp             EETTTCTTHHHHTTCCSSSEEEEE-ETTE--EEEEEESCC-----------CHHHHHHHHHHHHC
T ss_pred             ccccchhhHHHHhCCCcEEEEEEE-ECCE--EEEEEeCCC-----------CHHHHHHHHHHhcC
Confidence            345889999999999999988887 4674  244677753           24479999998886

>d1a8la2 c.47.1.2 (A:120-226) Protein disulfide isomerase, PDI {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=96.46  E-value=0.0015  Score=39.51  Aligned_cols=48  Identities=13%  Similarity=0.301  Sum_probs=33.9

Q ss_pred             eChhhHHHHhCCccCceEEEEecCCCCCeeEEEeeecCCCCCCCCCCCcHHHHHHHHHHHHc
Q 034345           16 FQSQDVARDFGAACTPEFFLFKKDGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECVLS   77 (97)
Q Consensus        16 D~~q~va~a~gA~~TPe~fvld~~g~~~~~l~Y~G~IDd~~~~~~~~~t~~~L~~Ai~alLa   77 (97)
                      |+.+++++.||...+|+++ +.++|+  ...++.|..+           ...+.+.|.+.|+
T Consensus        60 ~~~~~l~~~~~V~~vPTi~-i~~~G~--~~~~~~G~~~-----------~~~~~~~i~~al~  107 (107)
T d1a8la2          60 IEYPEWADQYNVMAVPKIV-IQVNGE--DRVEFEGAYP-----------EKMFLEKLLSALS  107 (107)
T ss_dssp             GGCHHHHHHTTCCSSCEEE-EEETTE--EEEEEESCCC-----------HHHHHHHHHHHHC
T ss_pred             ccccccccccccccceEEE-EEeCCe--EEEEEECCCC-----------HHHHHHHHHHhhC
Confidence            4557999999999999865 557775  3666777543           3467777776664

>d1dbya_ c.47.1.1 (A:) Thioredoxin {Chlamydomonas reinhardtii [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Chlamydomonas reinhardtii [TaxId: 3055]

Probab=96.41  E-value=0.0018  Score=39.30  Aligned_cols=48  Identities=25%  Similarity=0.350  Sum_probs=37.3

Q ss_pred             EeChhhHHHHhCCccCceEEEEecCCCCCeeEEEeeecCCCCCCCCCCCcHHHHHHHHHHHH
Q 034345           15 LFQSQDVARDFGAACTPEFFLFKKDGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECVL   76 (97)
Q Consensus        15 ~D~~q~va~a~gA~~TPe~fvld~~g~~~~~l~Y~G~IDd~~~~~~~~~t~~~L~~Ai~alL   76 (97)
                      .|..+++++.|+....|++++++ +|+  ..-+|.|..+           ...|.+.|+..|
T Consensus        59 ~d~~~~l~~~~~V~~~Pt~~~~~-~G~--~v~~~~G~~~-----------~~~l~~~i~~~L  106 (107)
T d1dbya_          59 TDESPNVASEYGIRSIPTIMVFK-GGK--KCETIIGAVP-----------KATIVQTVEKYL  106 (107)
T ss_dssp             TTTCHHHHHHHTCCSSCEEEEES-SSS--EEEEEESCCC-----------HHHHHHHHHHHC
T ss_pred             cccchhHHHHhcccceEEEEEEE-CCe--EEEEEeCCCC-----------HHHHHHHHHHhh
Confidence            57778999999999999999996 564  3556777643           347888888776

>d1nhoa_ c.47.1.1 (A:) MTH807, thioredoxin/glutaredoxin-like protein {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: MTH807, thioredoxin/glutaredoxin-like protein
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=96.37  E-value=0.0013  Score=38.78  Aligned_cols=44  Identities=16%  Similarity=0.348  Sum_probs=33.1

Q ss_pred             EeChhhHHHHhCCccCceEEEEecCCCCCeeEEEeeecCCCCCCCCCCCcHHHHHHHHHHHH
Q 034345           15 LFQSQDVARDFGAACTPEFFLFKKDGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECVL   76 (97)
Q Consensus        15 ~D~~q~va~a~gA~~TPe~fvld~~g~~~~~l~Y~G~IDd~~~~~~~~~t~~~L~~Ai~alL   76 (97)
                      .|+.++++++||...+|++++   +|    +.+|.|..+..           .|++.|++.|
T Consensus        41 ~d~~~~l~~~~~V~~~Pt~~~---~~----~~~~~G~~~~~-----------~l~~~i~~~l   84 (85)
T d1nhoa_          41 IMVDREKAIEYGLMAVPAIAI---NG----VVRFVGAPSRE-----------ELFEAINDEM   84 (85)
T ss_dssp             TTTCGGGGGGTCSSCSSEEEE---TT----TEEEECSSCCH-----------HHHHHHHHHC
T ss_pred             cccchhhHHhcCceEeCEEEE---CC----cEEEEcCCCHH-----------HHHHHHHHhh
Confidence            467889999999999998655   44    35688875433           6888887765

>d1fb6a_ c.47.1.1 (A:) Thioredoxin {Spinach (Spinacia oleracea), thioredoxin M [TaxId: 3562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Spinach (Spinacia oleracea), thioredoxin M [TaxId: 3562]

Probab=95.98  E-value=0.0033  Score=37.81  Aligned_cols=50  Identities=18%  Similarity=0.298  Sum_probs=36.8

Q ss_pred             EEEeChhhHHHHhCCccCceEEEEecCCCCCeeEEEeeecCCCCCCCCCCCcHHHHHHHHHHHH
Q 034345           13 ITLFQSQDVARDFGAACTPEFFLFKKDGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECVL   76 (97)
Q Consensus        13 vL~D~~q~va~a~gA~~TPe~fvld~~g~~~~~l~Y~G~IDd~~~~~~~~~t~~~L~~Ai~alL   76 (97)
                      +-.|...++++.||...+|+++++ ++|+  ..-+|.|..|           ...|...|+..|
T Consensus        55 v~~d~~~~l~~~~~V~~~Pt~~~~-~~G~--~v~~~~G~~~-----------~~~l~~~i~~~L  104 (104)
T d1fb6a_          55 LNTDEAPGIATQYNIRSIPTVLFF-KNGE--RKESIIGAVP-----------KSTLTDSIEKYL  104 (104)
T ss_dssp             EETTTCHHHHHHTTCCSSSEEEEE-ETTE--EEEEEEECCC-----------HHHHHHHHHHHC
T ss_pred             EecccchhhhhhcceeeeeEEEEE-EcCe--EEEEEeCCCC-----------HHHHHHHHHHhC
Confidence            456788899999999999998888 5674  3447777543           336777777654

>d1nw2a_ c.47.1.1 (A:) Thioredoxin {Alicyclobacillus acidocaldarius, formerly Bacillus acidocaldarius [TaxId: 405212]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Alicyclobacillus acidocaldarius, formerly Bacillus acidocaldarius [TaxId: 405212]

Probab=95.91  E-value=0.0015  Score=39.62  Aligned_cols=48  Identities=21%  Similarity=0.325  Sum_probs=35.6

Q ss_pred             EeChhhHHHHhCCccCceEEEEecCCCCCeeEEEeeecCCCCCCCCCCCcHHHHHHHHHHHH
Q 034345           15 LFQSQDVARDFGAACTPEFFLFKKDGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECVL   76 (97)
Q Consensus        15 ~D~~q~va~a~gA~~TPe~fvld~~g~~~~~l~Y~G~IDd~~~~~~~~~t~~~L~~Ai~alL   76 (97)
                      .|..+.+++.|+...+|+++++. +|+  ..-++.|..+           ...|+..|+++|
T Consensus        57 ~~~~~~~~~~~~V~~~Pt~~~~~-~G~--~~~~~~G~~~-----------~~~l~~~i~~~L  104 (105)
T d1nw2a_          57 VDENPETTSQFGIMSIPTLILFK-GGE--PVKQLIGYQP-----------KEQLEAQLADVL  104 (105)
T ss_dssp             TTTCHHHHHHTTCCBSSEEEEEE-TTE--EEEEEESCCC-----------HHHHHHHTTTTC
T ss_pred             CCCCcccHHHCCcceeeEEEEEE-CCE--EEEEEECCCC-----------HHHHHHHHHHHh
Confidence            46778999999999999999995 564  3446777542           346787777665

>d2es7a1 c.47.1.20 (A:7-125) Hydrogenase-1 operon protein HyaE {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: HyaE-like
domain: Hydrogenase-1 operon protein HyaE
species: Salmonella typhimurium [TaxId: 90371]

Probab=95.89  E-value=0.0027  Score=40.19  Aligned_cols=48  Identities=19%  Similarity=0.346  Sum_probs=34.9

Q ss_pred             EeChhhHHHHhCCccCceEEEEecCCCCCeeEEEeeecCCCCCCCCCCCcHHHHHHHHHHHH
Q 034345           15 LFQSQDVARDFGAACTPEFFLFKKDGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECVL   76 (97)
Q Consensus        15 ~D~~q~va~a~gA~~TPe~fvld~~g~~~~~l~Y~G~IDd~~~~~~~~~t~~~L~~Ai~alL   76 (97)
                      .|..+++++.||.+.+|+++++ ++|+  ..-++.|..|-.           +|.+.|+++|
T Consensus        71 ~d~~~~l~~~~~V~~~Pt~~~~-~~G~--~v~~~~G~~~~~-----------~l~~~i~~lL  118 (119)
T d2es7a1          71 LEQSEAIGDRFNVRRFPATLVF-TDGK--LRGALSGIHPWA-----------ELLTLMRSIV  118 (119)
T ss_dssp             HHHHHHHHHTTTCCSSSEEEEE-SCC------CEESCCCHH-----------HHHHHHHHHH
T ss_pred             CCCCHHHHHhcCcCcceEEEEE-EcCe--EEEEeeCCCCHH-----------HHHHHHHHHh
Confidence            4666789999999999999999 5775  466777765433           6888888876

>d1thxa_ c.47.1.1 (A:) Thioredoxin {Anabaena sp., pcc 7120 [TaxId: 1167]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Anabaena sp., pcc 7120 [TaxId: 1167]

Probab=95.84  E-value=0.0058  Score=36.96  Aligned_cols=49  Identities=10%  Similarity=0.154  Sum_probs=36.9

Q ss_pred             EeChhhHHHHhCCccCceEEEEecCCCCCeeEEEeeecCCCCCCCCCCCcHHHHHHHHHHHHc
Q 034345           15 LFQSQDVARDFGAACTPEFFLFKKDGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECVLS   77 (97)
Q Consensus        15 ~D~~q~va~a~gA~~TPe~fvld~~g~~~~~l~Y~G~IDd~~~~~~~~~t~~~L~~Ai~alLa   77 (97)
                      .|+...++++|+.+.+|++++++ +|+  ..-+|.|..           +...|..-|+..|+
T Consensus        60 ~d~~~~l~~~~~I~~~Pt~~~~~-~g~--~v~~~~G~~-----------~~~~l~~~i~~~Ln  108 (108)
T d1thxa_          60 IDPNPTTVKKYKVEGVPALRLVK-GEQ--ILDSTEGVI-----------SKDKLLSFLDTHLN  108 (108)
T ss_dssp             STTCHHHHHHTTCCSSSEEEEEE-TTE--EEEEEESCC-----------CHHHHHHHHHHHHC
T ss_pred             ccccHHHHHHhcccCCCEEEEEE-CCE--EEEEEeCCC-----------CHHHHHHHHHHhcC
Confidence            46788999999999999999997 564  344778753           23468888877663

>d2hfda1 c.47.1.20 (A:1-132) Hydrogenase-1 operon protein HyaE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: HyaE-like
domain: Hydrogenase-1 operon protein HyaE
species: Escherichia coli [TaxId: 562]

Probab=95.72  E-value=0.0046  Score=39.89  Aligned_cols=50  Identities=20%  Similarity=0.303  Sum_probs=38.6

Q ss_pred             eChhhHHHHhCCccCceEEEEecCCCCCeeEEEeeecCCCCCCCCCCCcHHHHHHHHHHHHcCC
Q 034345           16 FQSQDVARDFGAACTPEFFLFKKDGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECVLSGQ   79 (97)
Q Consensus        16 D~~q~va~a~gA~~TPe~fvld~~g~~~~~l~Y~G~IDd~~~~~~~~~t~~~L~~Ai~alLaG~   79 (97)
                      |.+.++++.||.+..|+++++ ++|+  ..-+|.|..|-           .+|...|+.++..+
T Consensus        78 d~~~~la~~~~V~~~PT~~~~-~~G~--~v~~~~G~~~~-----------~~l~~~i~~ll~~~  127 (132)
T d2hfda1          78 EQSEAIGDRFGVFRFPATLVF-TGGN--YRGVLNGIHPW-----------AELINLMRGLVEPQ  127 (132)
T ss_dssp             HHHHHHHHHHTCCSCCEEEEE-ETTE--EEEEECCCSCH-----------HHHHHHHHHHHSCS
T ss_pred             cCCHHHHHhhccCcceeEEEE-EcCc--EeeeecCCCCH-----------HHHHHHHHHHhCcc
Confidence            567789999999999998888 6664  35566676543           37888999888764

>d2ifqa1 c.47.1.1 (A:1-105) Thioredoxin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.64  E-value=0.005  Score=37.33  Aligned_cols=49  Identities=24%  Similarity=0.471  Sum_probs=36.2

Q ss_pred             EEEeChhhHHHHhCCccCceEEEEecCCCCCeeEEEeeecCCCCCCCCCCCcHHHHHHHHHHHH
Q 034345           13 ITLFQSQDVARDFGAACTPEFFLFKKDGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECVL   76 (97)
Q Consensus        13 vL~D~~q~va~a~gA~~TPe~fvld~~g~~~~~l~Y~G~IDd~~~~~~~~~t~~~L~~Ai~alL   76 (97)
                      +=.|+..++++.||.+.+|+++++ ++|+  ..-++.|. |           ...|+..|+.+|
T Consensus        57 vd~d~~~~~~~~~~V~~~Pt~~~~-~~G~--~v~~~~G~-~-----------~~~l~~~i~~~l  105 (105)
T d2ifqa1          57 VDVDDCQDVASECEVKCMPTFQFF-KKGQ--KVGEFSGA-N-----------KEKLEATINELV  105 (105)
T ss_dssp             EETTTCHHHHHHTTCCBSSEEEEE-ETTE--EEEEEESC-C-----------HHHHHHHHHHHC
T ss_pred             cccccCHhHHHHcCceEEEEEEEE-ECCE--EEEEEeCC-C-----------HHHHHHHHHhhC
Confidence            445678899999999999999999 5774  35556663 2           236888888764

>d1o73a_ c.47.1.10 (A:) Tryparedoxin I {Trypanosoma brucei brucei [TaxId: 5702]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Tryparedoxin I
species: Trypanosoma brucei brucei [TaxId: 5702]

Probab=95.45  E-value=0.0033  Score=40.08  Aligned_cols=22  Identities=23%  Similarity=0.652  Sum_probs=20.2

Q ss_pred             hhHHHHhCCccCceEEEEecC-C
Q 034345           19 QDVARDFGAACTPEFFLFKKD-G   40 (97)
Q Consensus        19 q~va~a~gA~~TPe~fvld~~-g   40 (97)
                      +++++.||+..+|+.||||++ |
T Consensus        98 ~~l~~~y~v~~~Pt~~lID~~~G  120 (144)
T d1o73a_          98 SELGKTFGVESIPTLITINADTG  120 (144)
T ss_dssp             HHHHHHHTCCSSSEEEEEETTTC
T ss_pred             HHHHHHcCCCcCCEEEEEECCCC
Confidence            468999999999999999998 6

>d1f9ma_ c.47.1.1 (A:) Thioredoxin {Spinach (Spinacia oleracea), thioredoxin F [TaxId: 3562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Spinach (Spinacia oleracea), thioredoxin F [TaxId: 3562]

Probab=94.96  E-value=0.031  Score=34.27  Aligned_cols=45  Identities=20%  Similarity=0.311  Sum_probs=33.6

Q ss_pred             hhhHHHHhCCccCceEEEEecCCCCCeeEEEeeecCCCCCCCCCCCcHHHHHHHHHHHHc
Q 034345           18 SQDVARDFGAACTPEFFLFKKDGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECVLS   77 (97)
Q Consensus        18 ~q~va~a~gA~~TPe~fvld~~g~~~~~l~Y~G~IDd~~~~~~~~~t~~~L~~Ai~alLa   77 (97)
                      .+++++.||...+|+++++ ++|+  ..-+|.|. +           ...+.++|++..+
T Consensus        68 ~~~l~~~~~V~~~Pt~~~~-k~G~--~v~~~~G~-~-----------~~~l~e~i~~~~~  112 (112)
T d1f9ma_          68 NKTLAKELGIRVVPTFKIL-KENS--VVGEVTGA-K-----------YDKLLEAIQAARS  112 (112)
T ss_dssp             THHHHHHHCCSSSSEEEEE-ETTE--EEEEEESS-C-----------HHHHHHHHHHHHC
T ss_pred             chhhHhheeeccCCEEEEE-ECCE--EEEEEeCC-C-----------HHHHHHHHHHccC
Confidence            5789999999999999999 5774  35567774 1           2367788877653

>d1ep7a_ c.47.1.1 (A:) Thioredoxin {Chlamydomonas reinhardtii [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Chlamydomonas reinhardtii [TaxId: 3055]

Probab=94.95  E-value=0.031  Score=34.16  Aligned_cols=48  Identities=19%  Similarity=0.247  Sum_probs=35.5

Q ss_pred             EeChhhHHHHhCCccCceEEEEecCCCCCeeEEEeeecCCCCCCCCCCCcHHHHHHHHHHHHc
Q 034345           15 LFQSQDVARDFGAACTPEFFLFKKDGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECVLS   77 (97)
Q Consensus        15 ~D~~q~va~a~gA~~TPe~fvld~~g~~~~~l~Y~G~IDd~~~~~~~~~t~~~L~~Ai~alLa   77 (97)
                      .|+..++++.||.+.+|+++++ ++|+  ..-++.|.            +...|+..|+...+
T Consensus        64 ~d~~~~l~~~~~v~~~Pt~~~~-~~G~--~v~~~~G~------------~~~~l~~~i~k~~a  111 (112)
T d1ep7a_          64 VDAVAAVAEAAGITAMPTFHVY-KDGV--KADDLVGA------------SQDKLKALVAKHAA  111 (112)
T ss_dssp             TTTTHHHHHHHTCCBSSEEEEE-ETTE--EEEEEESC------------CHHHHHHHHHHHHC
T ss_pred             ccccccccccccccCCCEEEEE-ECCE--EEEEEeCc------------CHHHHHHHHHHHhC
Confidence            5778899999999999998887 5774  35556663            23478888877654

>d2fwha1 c.47.1.1 (A:428-544) Thiol:disulfide interchange protein DsbD, C-terminal domain (DsbD-gamma) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thiol:disulfide interchange protein DsbD, C-terminal domain (DsbD-gamma)
species: Escherichia coli [TaxId: 562]

Probab=94.93  E-value=0.0094  Score=36.22  Aligned_cols=25  Identities=16%  Similarity=0.415  Sum_probs=22.3

Q ss_pred             ChhhHHHHhCCccCceEEEEecCCC
Q 034345           17 QSQDVARDFGAACTPEFFLFKKDGR   41 (97)
Q Consensus        17 ~~q~va~a~gA~~TPe~fvld~~g~   41 (97)
                      ...++++.||...+|+.+++|++|+
T Consensus        70 ~~~~l~~~~~v~~~Pt~~~~~~~G~   94 (117)
T d2fwha1          70 QDVALLKHLNVLGLPTILFFDGQGQ   94 (117)
T ss_dssp             HHHHHHHHTTCCSSSEEEEECTTSC
T ss_pred             HHHHHHhhhehhhceEEEEEeCCCc
Confidence            4567899999999999999999994

>d1fo5a_ c.47.1.1 (A:) MJ0307, thioredoxin/glutaredoxin-like protein {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: MJ0307, thioredoxin/glutaredoxin-like protein
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=94.86  E-value=0.0036  Score=36.39  Aligned_cols=45  Identities=18%  Similarity=0.281  Sum_probs=31.6

Q ss_pred             EEEeChhhHHHHhCCccCceEEEEecCCCCCeeEEEeeecCCCCCCCCCCCcHHHHHHHHHHH
Q 034345           13 ITLFQSQDVARDFGAACTPEFFLFKKDGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECV   75 (97)
Q Consensus        13 vL~D~~q~va~a~gA~~TPe~fvld~~g~~~~~l~Y~G~IDd~~~~~~~~~t~~~L~~Ai~al   75 (97)
                      +-.|+.+++|++||...+|+++ |+++|      +|.|..+           ...|.+.|+..
T Consensus        40 ~~~d~~~~la~~~~V~~~Pt~~-i~~~g------~~~G~~~-----------~~~l~~~i~~~   84 (85)
T d1fo5a_          40 INVMENPQKAMEYGIMAVPTIV-INGDV------EFIGAPT-----------KEALVEAIKKR   84 (85)
T ss_dssp             EESSSSCCTTTSTTTCCSSEEE-ETTEE------ECCSSSS-----------SHHHHHHHHHH
T ss_pred             ccccccccccccCCceEeeEEE-EECCc------EEECCCC-----------HHHHHHHHHhc
Confidence            4456888999999999999964 55555      3556532           33677777764

>d1xfla_ c.47.1.1 (A:) Thioredoxin {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=94.62  E-value=0.03  Score=34.25  Aligned_cols=50  Identities=20%  Similarity=0.355  Sum_probs=35.2

Q ss_pred             EEEeChhhHHHHhCCccCceEEEEecCCCCCeeEEEeeecCCCCCCCCCCCcHHHHHHHHHHHHc
Q 034345           13 ITLFQSQDVARDFGAACTPEFFLFKKDGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECVLS   77 (97)
Q Consensus        13 vL~D~~q~va~a~gA~~TPe~fvld~~g~~~~~l~Y~G~IDd~~~~~~~~~t~~~L~~Ai~alLa   77 (97)
                      +-.|+..++++.||.+.+|+++++ ++|+  ..-++.|.            +...|++.|+.-||
T Consensus        65 vd~~~~~~l~~~~~V~~~Pt~~~~-~~G~--~v~~~~G~------------~~~~l~~~i~k~la  114 (114)
T d1xfla_          65 VDTDELKSVASDWAIQAMPTFMFL-KEGK--ILDKVVGA------------KKDELQSTIAKHLA  114 (114)
T ss_dssp             EETTTSHHHHHHTTCCSSSEEEEE-ETTE--EEEEEESC------------CHHHHHHHHHHHCC
T ss_pred             EEeeeceeeccccceeeeEEEEEE-ECCE--EEEEEeCc------------CHHHHHHHHHHhhC
Confidence            445677799999999999998888 6774  23345552            13478888877654

>d1xzoa1 c.47.1.10 (A:3-174) Thioredoxin-like protein Sco1 (YpmQ), soluble domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thioredoxin-like protein Sco1 (YpmQ), soluble domain
species: Bacillus subtilis [TaxId: 1423]

Probab=94.54  E-value=0.069  Score=34.50  Aligned_cols=40  Identities=28%  Similarity=0.400  Sum_probs=25.9

Q ss_pred             ceeEEEeChhhH-----HHHhCCc-----------cCceEEEEecCCCCCeeEEEeee
Q 034345           10 MWLITLFQSQDV-----ARDFGAA-----------CTPEFFLFKKDGRRPFQLVYHGQ   51 (97)
Q Consensus        10 ~fpvL~D~~q~v-----a~a~gA~-----------~TPe~fvld~~g~~~~~l~Y~G~   51 (97)
                      +|.+|.+.+.+.     ++.|++.           +||.+||||++|+  ++-.|.|.
T Consensus        98 ~w~~lt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~~~liD~~G~--i~~~~~g~  153 (172)
T d1xzoa1          98 NWDFLTGYSQSEIEEFALKSFKAIVKKPEGEDQVIHQSSFYLVGPDGK--VLKDYNGV  153 (172)
T ss_dssp             GEEEEBCSCHHHHHHHHHHHHCCCCCCCSSCCSCCSCCEEEEECTTSE--EEEEEESS
T ss_pred             cceeeccchHHHHHHHHHhheeeEEeccCCCceEeeeeEEEEEcCCCe--EEEEEcCC
Confidence            356777766553     3556542           4577999999994  34347774

>d1gh2a_ c.47.1.1 (A:) Thioredoxin-like protein, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin-like protein, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.35  E-value=0.024  Score=34.58  Aligned_cols=49  Identities=24%  Similarity=0.331  Sum_probs=35.6

Q ss_pred             EEEeChhhHHHHhCCccCceEEEEecCCCCCeeEEEeeecCCCCCCCCCCCcHHHHHHHHHHHH
Q 034345           13 ITLFQSQDVARDFGAACTPEFFLFKKDGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECVL   76 (97)
Q Consensus        13 vL~D~~q~va~a~gA~~TPe~fvld~~g~~~~~l~Y~G~IDd~~~~~~~~~t~~~L~~Ai~alL   76 (97)
                      +=.|+.+++++.||...+|++.++ ++|+  ..=++.|+ |           ...|++.|+..|
T Consensus        58 vd~d~~~~l~~~~~v~~~Pt~~~~-~~G~--~v~~~~G~-~-----------~~~l~~~i~k~l  106 (107)
T d1gh2a_          58 VDVHQCQGTAATNNISATPTFQFF-RNKV--RIDQYQGA-D-----------AVGLEEKIKQHL  106 (107)
T ss_dssp             EETTTSHHHHHHTTCCSSSEEEEE-ETTE--EEEEEESS-C-----------HHHHHHHHHHHH
T ss_pred             cccccchhhhhhcCceeceEEEEE-ECCE--EEEEEeCC-C-----------HHHHHHHHHHhh
Confidence            336888999999999999999888 6774  23445563 2           236888887765

>d1i5ga_ c.47.1.10 (A:) Tryparedoxin II {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Tryparedoxin II
species: Crithidia fasciculata [TaxId: 5656]

Probab=94.10  E-value=0.012  Score=37.76  Aligned_cols=23  Identities=17%  Similarity=0.342  Sum_probs=20.2

Q ss_pred             hhHHHHhCCccCceEEEEecC-CC
Q 034345           19 QDVARDFGAACTPEFFLFKKD-GR   41 (97)
Q Consensus        19 q~va~a~gA~~TPe~fvld~~-g~   41 (97)
                      +.+++.||...+|+.||||++ |+
T Consensus        98 ~~l~~~y~v~~iPt~~lid~~~G~  121 (144)
T d1i5ga_          98 EFLTTGFDVKSIPTLVGVEADSGN  121 (144)
T ss_dssp             HHHHHHTTCCSSSEEEEEETTTCC
T ss_pred             HHHHHHCCCCCcCEEEEEeCCCCE
Confidence            458999999999999999997 63

>d1v58a1 c.47.1.9 (A:62-230) Thiol:disulfide interchange protein DsbG, C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: DsbC/DsbG C-terminal domain-like
domain: Thiol:disulfide interchange protein DsbG, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=93.99  E-value=0.015  Score=38.13  Aligned_cols=35  Identities=23%  Similarity=0.367  Sum_probs=27.8

Q ss_pred             eChhhHHHHhCCccCceEEEEecCCCCCeeEEEeeecC
Q 034345           16 FQSQDVARDFGAACTPEFFLFKKDGRRPFQLVYHGQFD   53 (97)
Q Consensus        16 D~~q~va~a~gA~~TPe~fvld~~g~~~~~l~Y~G~ID   53 (97)
                      +.+.++++.+|...||.+|+.|++|.   .-+..|..+
T Consensus       125 ~~n~~~a~~~gi~gTPt~i~~~~~g~---~~~~~G~~~  159 (169)
T d1v58a1         125 SDNEKLMDDLGANVTPAIYYMSKENT---LQQAVGLPD  159 (169)
T ss_dssp             HHHHHHHHHHTCCSSCEEEEEETTTE---EEEEESSCC
T ss_pred             HHHHHHHHhcCCCCCCEEEEECCCCC---EEEecCCCC
Confidence            55678899999999999999999983   345677644

>d1hyua4 c.47.1.2 (A:103-198) Alkyl hydroperoxide reductase subunit F (AhpF), N-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Alkyl hydroperoxide reductase subunit F (AhpF), N-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=93.74  E-value=0.032  Score=33.40  Aligned_cols=40  Identities=15%  Similarity=0.121  Sum_probs=29.0

Q ss_pred             hhhccee-EEEeChhhHHHHhCCccCceEEEEecCCCCCeeEEEeeec
Q 034345            6 YLFLMWL-ITLFQSQDVARDFGAACTPEFFLFKKDGRRPFQLVYHGQF   52 (97)
Q Consensus         6 ~~~~~fp-vL~D~~q~va~a~gA~~TPe~fvld~~g~~~~~l~Y~G~I   52 (97)
                      +..+.|- +=.|+.++++..||....|++|+   +|    +..|.|+.
T Consensus        44 ~~~i~~~~vd~~~~~~l~~~~~I~~vPt~~~---ng----~~~~~G~~   84 (96)
T d1hyua4          44 NPRIKHTAIDGGTFQNEITERNVMGVPAVFV---NG----KEFGQGRM   84 (96)
T ss_dssp             CTTEEEEEEETTTCHHHHHHTTCCSSSEEEE---TT----EEEEESCC
T ss_pred             CCceEEEEEecccchHHHhhcccccccEEEE---CC----EEEEecCC
Confidence            3344443 23367779999999999999876   66    67788874

>d2dlxa1 c.47.1.24 (A:1-147) UBX domain-containing protein 7 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: UAS domain
domain: UBX domain-containing protein 7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.56  E-value=0.087  Score=33.97  Aligned_cols=32  Identities=19%  Similarity=0.202  Sum_probs=24.4

Q ss_pred             hhhHHHHhCCccCceEEEEecC-CCCCeeEEEeeec
Q 034345           18 SQDVARDFGAACTPEFFLFKKD-GRRPFQLVYHGQF   52 (97)
Q Consensus        18 ~q~va~a~gA~~TPe~fvld~~-g~~~~~l~Y~G~I   52 (97)
                      ...+++.|++..+|++++||+. |+   .++.-|.+
T Consensus        90 ~~~~~~~y~v~~~Pti~~idp~~ge---~v~~~~~~  122 (147)
T d2dlxa1          90 GQRYIQFYKLGDFPYVSILDPRTGQ---KLVEWHQL  122 (147)
T ss_dssp             HHHHHHHHTCCSSSEEEEECTTTCC---CCEEESSC
T ss_pred             hhhhhhheecCceeEEEEEeCCCCe---EecccCCC
Confidence            3678999999999999999985 53   44444444

>d1hd2a_ c.47.1.10 (A:) Peroxiredoxin 5 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Peroxiredoxin 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.56  E-value=0.052  Score=35.11  Aligned_cols=39  Identities=8%  Similarity=-0.061  Sum_probs=30.6

Q ss_pred             hcceeEEEeChhhHHHHhCCcc------------CceEEEEecCCCCCeeEEEee
Q 034345            8 FLMWLITLFQSQDVARDFGAAC------------TPEFFLFKKDGRRPFQLVYHG   50 (97)
Q Consensus         8 ~~~fpvL~D~~q~va~a~gA~~------------TPe~fvld~~g~~~~~l~Y~G   50 (97)
                      .++||+|-|++++++++||...            +--.|+|+.+|    +++|.-
T Consensus        91 ~~~~~llsD~~~~~a~~~g~~~~~~~~g~~~~~~s~r~~~I~~~G----~I~~~~  141 (161)
T d1hd2a_          91 EGKVRLLADPTGAFGKETDLLLDDSLVSIFGNRRLKRFSMVVQDG----IVKALN  141 (161)
T ss_dssp             TTTCEEEECTTCHHHHHHTCBCCSTTHHHHSSCCBCCEEEEEETT----EEEEEE
T ss_pred             ccccccccCCcceeeeeeeeeeccccCccccccEEeEEEEEECCC----EEEEEE
Confidence            4578999999999999999742            23357777788    788874

>d1ti3a_ c.47.1.1 (A:) Thioredoxin {European aspen (Populus tremula), thioredoxin H [TaxId: 113636]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: European aspen (Populus tremula), thioredoxin H [TaxId: 113636]

Probab=93.52  E-value=0.071  Score=32.33  Aligned_cols=46  Identities=20%  Similarity=0.347  Sum_probs=32.5

Q ss_pred             EeChhhHHHHhCCccCceEEEEecCCCCCeeEEEeeecCCCCCCCCCCCcHHHHHHHHHHH
Q 034345           15 LFQSQDVARDFGAACTPEFFLFKKDGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECV   75 (97)
Q Consensus        15 ~D~~q~va~a~gA~~TPe~fvld~~g~~~~~l~Y~G~IDd~~~~~~~~~t~~~L~~Ai~al   75 (97)
                      .|+.+++++.||...+|+++++. +|+  ..-++.|+ |-           ..|...|+..
T Consensus        65 ~d~~~~l~~~~~I~~~Pt~~~~k-~G~--~v~~~~G~-~~-----------~~l~~~i~k~  110 (113)
T d1ti3a_          65 VDELKAVAEEWNVEAMPTFIFLK-DGK--LVDKTVGA-DK-----------DGLPTLVAKH  110 (113)
T ss_dssp             TTTCHHHHHHHHCSSTTEEEEEE-TTE--EEEEEECC-CT-----------THHHHHHHHH
T ss_pred             eeccccccccCeecccceEEEEE-CCE--EEEEEcCC-CH-----------HHHHHHHHHH
Confidence            46788999999999999988885 774  23455553 22           1577777654

>d1xwaa_ c.47.1.1 (A:) Thioredoxin {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=93.48  E-value=0.075  Score=31.95  Aligned_cols=36  Identities=19%  Similarity=0.448  Sum_probs=27.5

Q ss_pred             eEEEeChhhHHHHhCCccCceEEEEecCCCCCeeEEEee
Q 034345           12 LITLFQSQDVARDFGAACTPEFFLFKKDGRRPFQLVYHG   50 (97)
Q Consensus        12 pvL~D~~q~va~a~gA~~TPe~fvld~~g~~~~~l~Y~G   50 (97)
                      -+-.|+..++++.||.+.+|+++++ ++|+  ..-+|.|
T Consensus        62 ~i~~d~~~~l~~~~~V~~~Pt~~~~-~~G~--~v~~~~G   97 (111)
T d1xwaa_          62 KVDVDECEDIAMEYNISSMPTFVFL-KNGV--KVEEFAG   97 (111)
T ss_dssp             EEETTTCHHHHHHTTCCSSSEEEEE-ETTE--EEEEEES
T ss_pred             EEEeecCcchhhcCCCccccEEEEE-ECCE--EEEEEeC
Confidence            3556788899999999999998888 5664  3455666

>d1wp0a1 c.47.1.10 (A:138-297) Thioredoxin-like protein Sco1 (YpmQ), soluble domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thioredoxin-like protein Sco1 (YpmQ), soluble domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.38  E-value=0.03  Score=34.70  Aligned_cols=56  Identities=21%  Similarity=0.255  Sum_probs=33.7

Q ss_pred             cceeEEEeChh---hHHHHhCCc---------------cCceEEEEecCCCCCeeEEEeeecCCCCCCCCCCCcHHHHHH
Q 034345            9 LMWLITLFQSQ---DVARDFGAA---------------CTPEFFLFKKDGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRL   70 (97)
Q Consensus         9 ~~fpvL~D~~q---~va~a~gA~---------------~TPe~fvld~~g~~~~~l~Y~G~IDd~~~~~~~~~t~~~L~~   70 (97)
                      .+|..+.+...   .++++|++.               .++.+||||++|+  ++-+| |. +.+         ...+.+
T Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~~~LId~~G~--i~~~~-~~-~~~---------~~~i~~  151 (160)
T d1wp0a1          85 PKLVGLTGTREEVDQVARAYRVYYSPGPKDEDEDYIVDHTIIMYLIGPDGE--FLDYF-GQ-NKR---------KGEIAA  151 (160)
T ss_dssp             TTCEEEECCHHHHHHHHHHTTCCEEECCCCGGGCCCEEECCEEEEECTTSC--EEEEE-ET-TCC---------HHHHHH
T ss_pred             CCcccccCchHHhhHHhhhhheeeecccCCCCCCceEeccceEEEECCCCc--EEEEE-CC-CCC---------HHHHHH
Confidence            34555554443   466777754               4567899999995  33333 32 222         236888


Q ss_pred             HHHHHHc
Q 034345           71 AIECVLS   77 (97)
Q Consensus        71 Ai~alLa   77 (97)
                      +|.++|+
T Consensus       152 ~I~~~lk  158 (160)
T d1wp0a1         152 SIATHMR  158 (160)
T ss_dssp             HHHHHHT
T ss_pred             HHHHHHh
Confidence            8888875

>d1r26a_ c.47.1.1 (A:) Thioredoxin {Trypanosoma brucei [TaxId: 5691]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Trypanosoma brucei [TaxId: 5691]

Probab=93.32  E-value=0.087  Score=32.21  Aligned_cols=56  Identities=9%  Similarity=0.152  Sum_probs=37.0

Q ss_pred             hhcceeEE-EeChhhHHHHhCCccCceEEEEecCCCCCeeEEEeeecCCCCCCCCCCCcHHHHHHHHHHHHc
Q 034345            7 LFLMWLIT-LFQSQDVARDFGAACTPEFFLFKKDGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECVLS   77 (97)
Q Consensus         7 ~~~~fpvL-~D~~q~va~a~gA~~TPe~fvld~~g~~~~~l~Y~G~IDd~~~~~~~~~t~~~L~~Ai~alLa   77 (97)
                      ..+.|-.+ .|+..++++.||...+|+++++ ++|+  ..-++.|. +           ...+++.|++++.
T Consensus        56 ~~v~~~~vd~d~~~~l~~~~~V~~~Pt~~~~-~~G~--~v~~~~G~-~-----------~~~l~~~l~~~ik  112 (113)
T d1r26a_          56 PTVKFAKVDADNNSEIVSKCRVLQLPTFIIA-RSGK--MLGHVIGA-N-----------PGMLRQKLRDIIK  112 (113)
T ss_dssp             TTSEEEEEETTTCHHHHHHTTCCSSSEEEEE-ETTE--EEEEEESS-C-----------HHHHHHHHHHHHH
T ss_pred             ccccccccccccchhhHHHccccCCCEEEEE-ECCE--EEEEEeCC-C-----------HHHHHHHHHHHhc
Confidence            34444432 4677899999999999998888 5674  23356663 1           2357777777664

>d1wjka_ c.47.1.1 (A:) Thioredoxin-like structure containing protein C330018D20Rik {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin-like structure containing protein C330018D20Rik
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=92.55  E-value=0.035  Score=33.65  Aligned_cols=42  Identities=14%  Similarity=0.252  Sum_probs=29.9

Q ss_pred             eChhhHHHHhCCccCceEEEEecCCCCCeeEEEeeecCCCCCCCCCCCcHHHHHHHHHHHH
Q 034345           16 FQSQDVARDFGAACTPEFFLFKKDGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECVL   76 (97)
Q Consensus        16 D~~q~va~a~gA~~TPe~fvld~~g~~~~~l~Y~G~IDd~~~~~~~~~t~~~L~~Ai~alL   76 (97)
                      |.+.++++.||.. +|.+|+   +|    +....|++|..           .|+.+|+.+.
T Consensus        54 ~~~~~l~~~y~~~-VPvl~i---dg----~~~~~g~~d~~-----------~L~~~L~~l~   95 (100)
T d1wjka_          54 PENSTWYERYKFD-IPVFHL---NG----QFLMMHRVNTS-----------KLEKQLRKLS   95 (100)
T ss_dssp             STTHHHHHHSSSS-CSEEEE---SS----SEEEESSCCHH-----------HHHHHHHSSS
T ss_pred             ccCHHHHHHhccc-CCceee---cC----ceEEeCCCCHH-----------HHHHHHHHHh
Confidence            5667899999976 996654   55    34466777554           7999887643

>d1eeja1 c.47.1.9 (A:61-216) Disulfide bond isomerase, DsbC, C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: DsbC/DsbG C-terminal domain-like
domain: Disulfide bond isomerase, DsbC, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=92.38  E-value=0.024  Score=36.56  Aligned_cols=44  Identities=14%  Similarity=0.215  Sum_probs=31.9

Q ss_pred             eChhhHHHHhCCccCceEEEEecCCCCCeeEEEeeecCCCCCCCCCCCcHHHHHHHHHHHHc
Q 034345           16 FQSQDVARDFGAACTPEFFLFKKDGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECVLS   77 (97)
Q Consensus        16 D~~q~va~a~gA~~TPe~fvld~~g~~~~~l~Y~G~IDd~~~~~~~~~t~~~L~~Ai~alLa   77 (97)
                      +.+.++|+++|.+.||.+|+.  +|    + .+.|+++-.           .|+.+|++.++
T Consensus       108 ~~~~~la~~lgv~GTPt~~~~--nG----~-~v~G~~~~e-----------~l~~~i~~~~k  151 (156)
T d1eeja1         108 ADHYALGVQLGVSGTPAVVLS--NG----T-LVPGYQPPK-----------EMKEFLDEHQK  151 (156)
T ss_dssp             HHHHHHHHHHTCCSSSEEECT--TS----C-EEESCCCHH-----------HHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCcCCCEEEEe--CC----e-EecCCCCHH-----------HHHHHHHHHHH
Confidence            456688999999999987763  46    2 356876543           68888888654

>d1syra_ c.47.1.1 (A:) Thioredoxin {Malarial parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Malarial parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=92.06  E-value=0.07  Score=31.69  Aligned_cols=36  Identities=17%  Similarity=0.287  Sum_probs=27.3

Q ss_pred             EEEeChhhHHHHhCCccCceEEEEecCCCCCeeEEEeee
Q 034345           13 ITLFQSQDVARDFGAACTPEFFLFKKDGRRPFQLVYHGQ   51 (97)
Q Consensus        13 vL~D~~q~va~a~gA~~TPe~fvld~~g~~~~~l~Y~G~   51 (97)
                      +-.|+.+++++.||...+|++.++ ++|+  ..-+|.|.
T Consensus        55 vd~d~~~~~~~~~~V~~~Pt~i~~-k~G~--~v~~~~G~   90 (103)
T d1syra_          55 VDVDEVSEVTEKENITSMPTFKVY-KNGS--SVDTLLGA   90 (103)
T ss_dssp             EETTTTHHHHHHTTCCSSSEEEEE-ETTE--EEEEEESC
T ss_pred             eccccCcceeeeeeeecceEEEEE-ECCE--EEEEEeCc
Confidence            445678899999999999987777 4774  34477773

>d1nm3a2 c.47.1.10 (A:3-165) N-terminal, Prx domain of Hybrid-Prx5 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: N-terminal, Prx domain of Hybrid-Prx5
species: Haemophilus influenzae [TaxId: 727]

Probab=90.90  E-value=0.43  Score=30.63  Aligned_cols=39  Identities=10%  Similarity=-0.090  Sum_probs=30.9

Q ss_pred             hcceeEEEeChhhHHHHhCCccC-----------ceEEEEecCCCCCeeEEEeee
Q 034345            8 FLMWLITLFQSQDVARDFGAACT-----------PEFFLFKKDGRRPFQLVYHGQ   51 (97)
Q Consensus         8 ~~~fpvL~D~~q~va~a~gA~~T-----------Pe~fvld~~g~~~~~l~Y~G~   51 (97)
                      ...|++|-|..+.++++||....           --+||+| +|    +++|.-.
T Consensus        90 ~~~~~llsD~~~~~~~~~g~~~~~~~~g~g~~s~R~~~Iid-dG----~I~~~~v  139 (163)
T d1nm3a2          90 SENISFIPDGNGEFTEGMGMLVGKEDLGFGKRSWRYSMLVK-NG----VVEKMFI  139 (163)
T ss_dssp             CTTSEEEECTTSHHHHHTTCEEECTTTTCCEEECCEEEEEE-TT----EEEEEEE
T ss_pred             cCceeeeccCChHHHHHhhhhccccccccccccceEEEEEe-CC----EEEEEEE
Confidence            45799999999999999997432           3489999 88    6777744

>d2f8aa1 c.47.1.10 (A:12-195) Glutathione peroxidase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Glutathione peroxidase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.60  E-value=0.085  Score=35.51  Aligned_cols=33  Identities=39%  Similarity=0.468  Sum_probs=22.6

Q ss_pred             eEEEEecCCCCCeeEEEeeecCCCCCCCCCCCcHHHHHHHHHHHHc
Q 034345           32 EFFLFKKDGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECVLS   77 (97)
Q Consensus        32 e~fvld~~g~~~~~l~Y~G~IDd~~~~~~~~~t~~~L~~Ai~alLa   77 (97)
                      +-||||++|+  ++-+|.+..+-.           .|+.+|++||+
T Consensus       152 tKFLIdr~G~--vv~rf~~~~~p~-----------~i~~~Ie~lL~  184 (184)
T d2f8aa1         152 EKFLVGPDGV--PLRRYSRRFQTI-----------DIEPDIEALLS  184 (184)
T ss_dssp             CEEEECTTSC--EEEEECTTSCGG-----------GGHHHHHHHHC
T ss_pred             EEEEECCCCC--EEEEECCCCCHH-----------HHHHHHHHHhC
Confidence            6799999996  333454432221           58899999986

>d2b5ea4 c.47.1.2 (A:23-141) Protein disulfide isomerase, PDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=89.93  E-value=0.15  Score=31.03  Aligned_cols=34  Identities=21%  Similarity=0.387  Sum_probs=25.6

Q ss_pred             ChhhHHHHhCCccCceEEEEecCCCCCeeEEEeee
Q 034345           17 QSQDVARDFGAACTPEFFLFKKDGRRPFQLVYHGQ   51 (97)
Q Consensus        17 ~~q~va~a~gA~~TPe~fvld~~g~~~~~l~Y~G~   51 (97)
                      ..++++..|++...|+++++ ++|+..-.+.|.|.
T Consensus        70 ~~~~l~~~~~v~~~Pti~~f-~~g~~~~~~~y~g~  103 (119)
T d2b5ea4          70 ENQDLCMEHNIPGFPSLKIF-KNSDVNNSIDYEGP  103 (119)
T ss_dssp             TCHHHHHHTTCCSSSEEEEE-ETTCTTCEEECCSC
T ss_pred             chHHHHHHhccccCCeEEEE-ECCEEeeeEEecCC
Confidence            66899999999999999999 44432124667775

>d1a8la1 c.47.1.2 (A:1-119) Protein disulfide isomerase, PDI {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=89.23  E-value=0.13  Score=32.57  Aligned_cols=31  Identities=19%  Similarity=0.490  Sum_probs=24.6

Q ss_pred             hhHHHHhCCccCceEEEEecCCCCCeeEEEeee
Q 034345           19 QDVARDFGAACTPEFFLFKKDGRRPFQLVYHGQ   51 (97)
Q Consensus        19 q~va~a~gA~~TPe~fvld~~g~~~~~l~Y~G~   51 (97)
                      .++|+.||..++|.+.+++. |+. ..++|+|-
T Consensus        68 ~~~~~~~~ver~Ps~~i~~~-g~~-~gIrF~Gi   98 (119)
T d1a8la1          68 KELAKRYRIDRAPATTITQD-GKD-FGVRYFGL   98 (119)
T ss_dssp             HHHHHHTTCCSSSEEEEEET-TBC-CSEEEESC
T ss_pred             hhHHHhhccccCceEEEecC-Ccc-cceEEEec
Confidence            47899999999998888775 322 25999995

>d1a8ya1 c.47.1.3 (A:3-126) Calsequestrin {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Calsequestrin
domain: Calsequestrin
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=89.19  E-value=0.18  Score=30.75  Aligned_cols=46  Identities=22%  Similarity=0.395  Sum_probs=33.3

Q ss_pred             eChhhHHHHhCCccCceEEEEecCCCCCeeEEEeeecCCCCCCCCCCCcHHHHHHHHHHHH
Q 034345           16 FQSQDVARDFGAACTPEFFLFKKDGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECVL   76 (97)
Q Consensus        16 D~~q~va~a~gA~~TPe~fvld~~g~~~~~l~Y~G~IDd~~~~~~~~~t~~~L~~Ai~alL   76 (97)
                      +...++++.|+.+..|+++++.+ |+   .+.|.|..+           ...|.+-|..++
T Consensus        76 ~~~~~l~~~~~I~~yPTi~~f~~-g~---~~~y~G~r~-----------~~~l~~fi~~~l  121 (124)
T d1a8ya1          76 EKDAAVAKKLGLTEEDSIYVFKE-DE---VIEYDGEFS-----------ADTLVEFLLDVL  121 (124)
T ss_dssp             TTSHHHHHTTTCCSTTCEEEEES-SS---EEECCSCCS-----------HHHHHHHHHHHH
T ss_pred             ecccchhhccccccCCcEEEecc-Cc---cEEeeCCCC-----------HHHHHHHHHHhc
Confidence            34678999999999999999975 43   788998532           335666555554

>d1qgva_ c.47.1.8 (A:) spliceosomal protein U5-15Kd {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: spliceosomal protein U5-15Kd
domain: spliceosomal protein U5-15Kd
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.11  E-value=0.19  Score=32.06  Aligned_cols=65  Identities=11%  Similarity=0.118  Sum_probs=37.5

Q ss_pred             ccee-EEEeChhhHHHHhCCccCceEEEEecCCCCCeeEEEeeecCCCCCCCCCCCcHHHHHHHHHHHHc
Q 034345            9 LMWL-ITLFQSQDVARDFGAACTPEFFLFKKDGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECVLS   77 (97)
Q Consensus         9 ~~fp-vL~D~~q~va~a~gA~~TPe~fvld~~g~~~~~l~Y~G~IDd~~~~~~~~~t~~~L~~Ai~alLa   77 (97)
                      +.|- |=.|+..++++.|+...+|++.++.+..   ....-.|..+++.. ...-.+...+.+.|+.+..
T Consensus        55 v~~~~VDvd~~~~la~~~~I~~~PT~~~f~~g~---~i~~~~g~~~~~k~-~~~l~~~~~~i~~ie~i~~  120 (137)
T d1qgva_          55 AVIYLVDITEVPDFNKMYELYDPCTVMFFFRNK---HIMIDLGTGNNNKI-NWAMEDKQEMVDIIETVYR  120 (137)
T ss_dssp             EEEEEEETTTCCTTTTSSCSCSSCEEEEEETTE---EEEEECC------C-CSCCSCHHHHHHHHHHHHH
T ss_pred             ceEEEeeccccchhhhhcCeeeEEEEEEEeCCc---EEEEEecCCCccee-eeehhhhHHHHHHHHHHHH
Confidence            3443 3367788999999999999999995443   12344566655432 2222245566666766543

>d1beda_ c.47.1.13 (A:) Disulfide-bond formation facilitator (DsbA) {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: DsbA-like
domain: Disulfide-bond formation facilitator (DsbA)
species: Vibrio cholerae [TaxId: 666]

Probab=89.07  E-value=0.14  Score=32.17  Aligned_cols=46  Identities=11%  Similarity=0.137  Sum_probs=30.0

Q ss_pred             eChhhHHHHhCCccCceEEEEecCCCCCeeEEEeeecCCCCCCCCCCCcHHHHHHHHHHHHc
Q 034345           16 FQSQDVARDFGAACTPEFFLFKKDGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECVLS   77 (97)
Q Consensus        16 D~~q~va~a~gA~~TPe~fvld~~g~~~~~l~Y~G~IDd~~~~~~~~~t~~~L~~Ai~alLa   77 (97)
                      ..+.+.++.+|.+.||.+||   +|+  ..+...|.   .        +-..|.+.|+.|+.
T Consensus       134 ~~~~~~~~~~gi~gTPt~~I---nGk--~~v~~~~~---~--------~~~~l~~~i~~L~~  179 (181)
T d1beda_         134 RRFDKQFQDSGLTGVPAVVV---NNR--YLVQGQSV---K--------SLDEYFDLVNYLLT  179 (181)
T ss_dssp             HHHHHHHHHHTCCSSSEEEE---TTT--EEECGGGC---C--------SHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhCCccccEEEE---CCE--EeeCCCCC---C--------CHHHHHHHHHHHHh
Confidence            34567889999999997777   663  11222222   1        24478899988875

>d1t3ba1 c.47.1.9 (A:61-210) Disulfide bond isomerase, DsbC, C-terminal domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: DsbC/DsbG C-terminal domain-like
domain: Disulfide bond isomerase, DsbC, C-terminal domain
species: Haemophilus influenzae [TaxId: 727]

Probab=89.05  E-value=0.041  Score=35.31  Aligned_cols=42  Identities=21%  Similarity=0.332  Sum_probs=28.7

Q ss_pred             EeChhhHHHHhCCccCceEEEEecCCCCCeeEEEeeecCCCCCCCCCCCcHHHHHHHHHH
Q 034345           15 LFQSQDVARDFGAACTPEFFLFKKDGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIEC   74 (97)
Q Consensus        15 ~D~~q~va~a~gA~~TPe~fvld~~g~~~~~l~Y~G~IDd~~~~~~~~~t~~~L~~Ai~a   74 (97)
                      ++.+.++|+.+|.+-||.+|+.  +|+     ...|.++-           ..|+.+|++
T Consensus       107 i~~~~~la~~lGv~GTPt~~~~--nG~-----~i~G~~~~-----------~~l~~~l~~  148 (150)
T d1t3ba1         107 VKKHYELGIQFGVRGTPSIVTS--TGE-----LIGGYLKP-----------ADLLRALEE  148 (150)
T ss_dssp             HHHHHHHHHHHTCCSSCEEECT--TSC-----CCCSCCCH-----------HHHHHHHHH
T ss_pred             HHHHHHHHHhcCcCCCCEEEEc--CCc-----EecCCCCH-----------HHHHHHHHh
Confidence            3566789999999999988874  452     34665432           257777654

>d1tp9a1 c.47.1.10 (A:1-162) Plant peroxiredoxin {Western balsam poplar(Populus trichocarpa) [TaxId: 3694]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Plant peroxiredoxin
species: Western balsam poplar(Populus trichocarpa) [TaxId: 3694]

Probab=88.75  E-value=0.34  Score=30.96  Aligned_cols=37  Identities=11%  Similarity=-0.075  Sum_probs=30.2

Q ss_pred             cceeEEEeChhhHHHHhCCccC-----------ceEEEEecCCCCCeeEEEee
Q 034345            9 LMWLITLFQSQDVARDFGAACT-----------PEFFLFKKDGRRPFQLVYHG   50 (97)
Q Consensus         9 ~~fpvL~D~~q~va~a~gA~~T-----------Pe~fvld~~g~~~~~l~Y~G   50 (97)
                      .+++.+-|++++++++||...-           =.+||+| +|    +++|.-
T Consensus        96 ~~~~~lsD~~~~~~~~~g~~~~~~~~g~g~~~~R~tfiId-dg----~I~~~~  143 (162)
T d1tp9a1          96 KHVKFLADGSATYTHALGLELDLQEKGLGTRSRRFALLVD-DL----KVKAAN  143 (162)
T ss_dssp             SSEEEEECTTSHHHHHTTCEEEETTTTSEEEECCEEEEEE-TT----EEEEEE
T ss_pred             cccccccchhhHHHhhhhhccccccccCCcEEEEEEEEEE-CC----EEEEEE
Confidence            4699999999999999997531           1379999 78    789984

>d1zmaa1 c.47.1.1 (A:1-115) Bacterocin transport accessory protein Bta {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Bacterocin transport accessory protein Bta
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=88.14  E-value=0.14  Score=30.99  Aligned_cols=31  Identities=19%  Similarity=0.448  Sum_probs=24.1

Q ss_pred             hhHHHHhCCccCceEEEEecCCCCCeeEEEeeec
Q 034345           19 QDVARDFGAACTPEFFLFKKDGRRPFQLVYHGQF   52 (97)
Q Consensus        19 q~va~a~gA~~TPe~fvld~~g~~~~~l~Y~G~I   52 (97)
                      +.+++.||...+|+.+++. +|+  ...+|.|.+
T Consensus        74 ~~~~~~~~V~~~PTli~~~-~gk--~~~~~~G~~  104 (115)
T d1zmaa1          74 QAFRSRYGIPTVPGFVHIT-DGQ--INVRCDSSM  104 (115)
T ss_dssp             HHHHHHHTCCSSCEEEEEE-TTE--EEEECCTTC
T ss_pred             cccccccccccccEEEEEE-CCE--EEEEEcCCC
Confidence            5789999999999999996 563  466676653

>d1meka_ c.47.1.2 (A:) Protein disulfide isomerase, PDI {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.73  E-value=0.38  Score=28.73  Aligned_cols=36  Identities=17%  Similarity=0.320  Sum_probs=25.7

Q ss_pred             EeChhhHHHHhCCccCceEEEEecCCCCCeeEEEeee
Q 034345           15 LFQSQDVARDFGAACTPEFFLFKKDGRRPFQLVYHGQ   51 (97)
Q Consensus        15 ~D~~q~va~a~gA~~TPe~fvld~~g~~~~~l~Y~G~   51 (97)
                      .|..+.+++.|+...+|+++++.+.... ....|.|.
T Consensus        67 ~~~~~~l~~~~~i~~~Pt~~~~~~G~~~-~~~~~~g~  102 (120)
T d1meka_          67 ATEESDLAQQYGVRGYPTIKFFRNGDTA-SPKEYTAG  102 (120)
T ss_dssp             TTTCCSSHHHHTCCSSSEEEEEESSCSS-SCEECCCC
T ss_pred             cccchhHHHHhCCccCCeEEEEECCeEe-eeEEecCC
Confidence            3567789999999999999888543211 14567774

>d1z6ma1 c.47.1.13 (A:1-172) Hypothetical protein EF0770 {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: DsbA-like
domain: Hypothetical protein EF0770
species: Enterococcus faecalis [TaxId: 1351]

Probab=83.20  E-value=0.38  Score=29.92  Aligned_cols=20  Identities=10%  Similarity=0.059  Sum_probs=16.7

Q ss_pred             hhhHHHHhCCccCceEEEEecCC
Q 034345           18 SQDVARDFGAACTPEFFLFKKDG   40 (97)
Q Consensus        18 ~q~va~a~gA~~TPe~fvld~~g   40 (97)
                      ..+.++.+|.+.||++||   +|
T Consensus       135 ~~~~a~~~gI~gTPt~~I---ng  154 (172)
T d1z6ma1         135 VIAEANAAHIQFVPTIII---GE  154 (172)
T ss_dssp             HHHHHHHHTCCSSCEEEE---TT
T ss_pred             HHHHHHHcCCCcCCEEEE---CC
Confidence            356678899999999988   66

>d1woua_ c.47.1.16 (A:) Putative 42-9-9 protein (thioredoxin containing protein Txnl5) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Txnl5-like
domain: Putative 42-9-9 protein (thioredoxin containing protein Txnl5)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=81.43  E-value=0.19  Score=30.98  Aligned_cols=26  Identities=8%  Similarity=0.230  Sum_probs=22.4

Q ss_pred             EeChhhHHHHhCCccCceEEEEecCC
Q 034345           15 LFQSQDVARDFGAACTPEFFLFKKDG   40 (97)
Q Consensus        15 ~D~~q~va~a~gA~~TPe~fvld~~g   40 (97)
                      .|....+++.||....|++++++..+
T Consensus        75 ~d~~~~l~~~~~V~~iPT~i~~~~g~  100 (119)
T d1woua_          75 KDPNNDFRKNLKVTAVPTLLKYGTPQ  100 (119)
T ss_dssp             HCTTCHHHHHHCCCSSSEEEETTSSC
T ss_pred             chhhhhHHHhCCeEEEEEEEEEECCe
Confidence            37788899999999999999997554

>d1fvka_ c.47.1.13 (A:) Disulfide-bond formation facilitator (DsbA) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: DsbA-like
domain: Disulfide-bond formation facilitator (DsbA)
species: Escherichia coli [TaxId: 562]

Probab=81.38  E-value=0.46  Score=29.94  Aligned_cols=52  Identities=17%  Similarity=0.215  Sum_probs=29.8

Q ss_pred             eChhhHHHHhCCccCceEEEEecCCCCCeeEEEeeecCCCCCCCCCCCcHHHHHHHHHHHHc
Q 034345           16 FQSQDVARDFGAACTPEFFLFKKDGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIECVLS   77 (97)
Q Consensus        16 D~~q~va~a~gA~~TPe~fvld~~g~~~~~l~Y~G~IDd~~~~~~~~~t~~~L~~Ai~alLa   77 (97)
                      +..-+.|+.+|.+.||.+||   +|+   -+.--|.++....    ......+.+.|+.|++
T Consensus       136 ~~~~~~a~~~gI~gTPt~vI---nGk---y~i~~~~~~~~~~----~~~~~~~~~~v~~l~~  187 (188)
T d1fvka_         136 AQQEKAAADVQLRGVPAMFV---NGK---YQLNPQGMDTSNM----DVFVQQYADTVKYLSE  187 (188)
T ss_dssp             HHHHHHHHHTTCCSSSEEEE---TTT---EEECGGGSCCSSH----HHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHcCCccccEEEE---CCE---EEecccccccchH----HHHHHHHHHHHHHHHc
Confidence            34456789999999997766   563   2444444444311    1123345556666654

>d1ry2a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Acetyl-CoA synthetase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=81.08  E-value=0.72  Score=34.53  Aligned_cols=52  Identities=21%  Similarity=0.171  Sum_probs=41.9

Q ss_pred             hhHHHHh-----CCccCceEEEEecCCCCCeeEEEeeecCCCCCCCCCCCcHHHHHHHHHH
Q 034345           19 QDVARDF-----GAACTPEFFLFKKDGRRPFQLVYHGQFDDSRPSNNLPVTGRDIRLAIEC   74 (97)
Q Consensus        19 q~va~a~-----gA~~TPe~fvld~~g~~~~~l~Y~G~IDd~~~~~~~~~t~~~L~~Ai~a   74 (97)
                      ...+++|     |--+|=+...+|.+|    .+.+.||.||.-...+..+.-.+++++|.+
T Consensus       468 e~t~~~~~~~~~gw~~TGDlg~~d~dG----~l~i~GR~dd~Ik~~G~~I~p~eIE~~l~~  524 (640)
T d1ry2a_         468 DRYLDTYLNPYPGYYFTGDGAAKDKDG----YIWILGRVDDVVNVSGHRLSTAEIEAAIIE  524 (640)
T ss_dssp             HHHHHHHTSSSTTSEEEEEEEEECTTC----CEEECSCTTSCBCSSSCCBCHHHHHHHHHS
T ss_pred             HHHHhhhccCCCCeEEcCCceeECCCC----CEEEEEcCCCEEEECCEEECHHHHHHHHHh
Confidence            3556666     566899999999999    699999999997767777777888877643