Citrus Sinensis ID: 034371

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90------
Protein Sequence
MGSSLSFKALFGALAVGWLICLLLIGNLESGGNSTSTLTTTQSTANLKRAEALGREKFIDHPELDLNYMSKRRVPNGPDPIHNRRAGNSGRPPGQS
Secondary Structure (PSIPRED)
cccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccEccccccccHHHccccccccccccccccEccccccccccccccccccccccccccc
Coil and Loop (DISEMBL)
MGSSLSFKALFGALAVGWLICLLLIGnlesggnststltttQSTANLKRAEALGrekfidhpeldlnymskrrvpngpdpihnrragnsgrppgqs
Flexible Loop (DISEMBL)
MGSSLSFKALFGALAVGWLICLLLIGNLESGGNSTStltttqstanLKRAEAlgrekfidhpeldlnymskrrvpngpdpihnrragnsgrppgqs
Low Complexity Region (SEG)
MGSSLSFKALFGALAVGWLICLLLIGNLESGGNststltttqstANLKRAEALGREKFIDHPELDLNYMSKRRVPNGPDPIHNRRAGNSGRPPGQS
Disordered region (IsUnstruct)
******FKALFGALAVGWLICLLLIGNL********************************************************************
Disordered Region (DISOPRED)
*****SF**LFGALAVGWLICLLLIGNLE**************************************YMSKRRVPNGPDP****************
Disordered Region (DISEMBL)
MGSSLSFKALFGALAVGWLICLLLIGNLESGGNSTSTLTTTQSTANLKRAEALGREKFIDHPELDLNYMSKRRVPNGPDPIHNRRA**********
Disordered Region (DISPRO)
***SLSFKALFGALAVGWLICLLLIGNLESG*************************KFIDHPELDLNYMSKRRVPNGPDP****************
Transmembrane Helix (TMHMM)
oooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
iiiiiiiiHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MGSSLSFKALFGALAVGWLICLLLIGNLESGGNSTSTLTTTQSTANLKRAEALGREKFIDHPELDLNYMSKRRVPNGPDPIHNRRAGNSGRPPGQS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	96	2.2.26 [Sep-21-2011]
Q8LFL4	81	CLAVATA3/ESR (CLE)-relate	no	no	0.770	0.913	0.379	1e-08

>sp|Q8LFL4|CLE25_ARATH CLAVATA3/ESR (CLE)-related protein 25 OS=Arabidopsis thaliana GN=CLE25 PE=2 SV=1

 Score = 58.2 bits (139), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 33/87 (37%), Positives = 50/87 (57%), Gaps = 13/87 (14%)

Query: 7  FKALFGALAVGWLICLLLIGNLESGGNSTSTLTTTQSTANLKRAEALGREKFIDHPELDL 66
           +AL G +A   LI  LL+G L    NS  ++ ++++   L+              +++L
Sbjct: 6  IRALVGVIASLGLIVFLLVGIL---ANSAPSVPSSENVKTLR----------FSGKDVNL 52

Query: 67 NYMSKRRVPNGPDPIHNRRAGNSGRPP 93
           ++SKR+VPNGPDPIHNR+A  S RPP
Sbjct: 53 FHVSKRKVPNGPDPIHNRKAETSRRPP 79

Extracellular signal peptide that regulates cell fate. Represses root apical meristem maintenance.
Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	96
296086471	111	unnamed protein product [Vitis vinifera]	1.0	0.864	0.626	9e-22
224107855	109	predicted protein [Populus trichocarpa]	0.937	0.825	0.581	7e-21
255558316	104	conserved hypothetical protein [Ricinus	0.989	0.913	0.545	4e-20
356498099	108	PREDICTED: CLAVATA3/ESR (CLE)-related pr	0.604	0.537	0.689	8e-16
224100195	107	predicted protein [Populus trichocarpa]	0.968	0.869	0.54	9e-15
359473308	65	PREDICTED: CLAVATA3/ESR (CLE)-related pr	0.614	0.907	0.644	3e-14
449458047	104	PREDICTED: uncharacterized protein LOC10	0.385	0.355	0.891	6e-13
449531450	104	PREDICTED: uncharacterized protein LOC10	0.385	0.355	0.864	2e-12
255552776	91	CLE25, putative [Ricinus communis] gi|22	0.802	0.846	0.467	5e-12
357486383	124	hypothetical protein MTR_5g037140 [Medic	0.875	0.677	0.488	6e-12

>gi|296086471|emb|CBI32060.3| unnamed protein product [Vitis vinifera]

 Score =  107 bits (267), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 62/99 (62%), Positives = 71/99 (71%), Gaps = 3/99 (3%)

Query: 1   MGSSLS-FKALFGALA-VGWLICLLLIGNLESGG-NSTSTLTTTQSTANLKRAEALGREK 57
           MGSS   FK+LFGALA VG +  LL  G LESGG  +TS L    S  NLK  + + RE+
Sbjct: 8   MGSSRGLFKSLFGALAFVGCVWLLLGGGILESGGAKTTSMLAAHYSLENLKHMKVIDRER 67

Query: 58  FIDHPELDLNYMSKRRVPNGPDPIHNRRAGNSGRPPGQS 96
            +   +LDLNYMSKRRVPNGPDPIHNRRAGNS +PPGQS
Sbjct: 68  LVIRRQLDLNYMSKRRVPNGPDPIHNRRAGNSRQPPGQS 106

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224107855|ref|XP_002314627.1| predicted protein [Populus trichocarpa] gi|222863667|gb|EEF00798.1| predicted protein [Populus trichocarpa]

 Score =  104 bits (260), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 57/98 (58%), Positives = 68/98 (69%), Gaps = 8/98 (8%)

Query: 7   FKALFGALAVGWLICLLLIGNLESGGNS---TSTLTTTQSTAN-LK---RAEALGREKFI 59
           FK L G +A    + LLL+G LESG  S   TS L + Q+T N LK     + +GREK +
Sbjct: 12  FKVLLGGIATVVFVMLLLVGALESGATSKMTTSRLNSVQATQNDLKDDHEKDVIGREKLV 71

Query: 60  DHPELDLNYM-SKRRVPNGPDPIHNRRAGNSGRPPGQS 96
            + ELDLNYM SKRRVPNGPDPIHNRRAGNS RPPG++
Sbjct: 72  YNSELDLNYMMSKRRVPNGPDPIHNRRAGNSKRPPGRA 109

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255558316|ref|XP_002520185.1| conserved hypothetical protein [Ricinus communis] gi|223540677|gb|EEF42240.1| conserved hypothetical protein [Ricinus communis]

 Score =  102 bits (253), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 54/99 (54%), Positives = 67/99 (67%), Gaps = 4/99 (4%)

Query: 2   GSSLSFKALFGALAVGWLICLLLIGNLESGG-NSTSTLTTTQ--STANLKRAEALGREKF 58
           G S+ FK L+G +A+   + LL +  LES     T+T  T Q  +T N K    +GREK 
Sbjct: 6   GHSMLFKVLYGVIAMLGFVWLLSVATLESAAATKTTTPLTVQLSTTGNPKHEVDIGREKL 65

Query: 59  IDHPELDLNYM-SKRRVPNGPDPIHNRRAGNSGRPPGQS 96
           +  PELDLNYM SKR+VPNGPDPIHNRRAGNS RPPG++
Sbjct: 66  VYDPELDLNYMMSKRKVPNGPDPIHNRRAGNSKRPPGRA 104

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356498099|ref|XP_003517891.1| PREDICTED: CLAVATA3/ESR (CLE)-related protein 25-like [Glycine max]

 Score = 87.8 bits (216), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 40/58 (68%), Positives = 45/58 (77%)

Query: 39  TTTQSTANLKRAEALGREKFIDHPELDLNYMSKRRVPNGPDPIHNRRAGNSGRPPGQS 96
           TT  S   +K    +GR+K +D  ELD NYMSKRRVPNGPDPIHNRRAGNSGRPPGQ+
Sbjct: 51  TTQWSQERVKHERVVGRDKPVDRAELDFNYMSKRRVPNGPDPIHNRRAGNSGRPPGQA 108

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224100195|ref|XP_002311783.1| predicted protein [Populus trichocarpa] gi|222851603|gb|EEE89150.1| predicted protein [Populus trichocarpa]

 Score = 84.3 bits (207), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 54/100 (54%), Positives = 67/100 (67%), Gaps = 7/100 (7%)

Query: 4   SLSFKALFGALAVGWLICLLLIGNLESGGNSTSTLTTT------QSTANLKRAEALGREK 57
           SLSFK L  A+A   L+ LLL+G LESG    +  T T      Q     +  E +GREK
Sbjct: 8   SLSFKVLLAAVATVMLVLLLLVGALESGATKMTERTQTVLDSIAQDDLRRRHEELIGREK 67

Query: 58  FIDHPELDLNY-MSKRRVPNGPDPIHNRRAGNSGRPPGQS 96
            + +PELDLN+ M+KR+VPNGPDPIHNRRAGNS RPPG++
Sbjct: 68  LVYNPELDLNFVMNKRKVPNGPDPIHNRRAGNSRRPPGRA 107

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359473308|ref|XP_003631289.1| PREDICTED: CLAVATA3/ESR (CLE)-related protein 25-like [Vitis vinifera]

 Score = 82.4 bits (202), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 38/59 (64%), Positives = 44/59 (74%)

Query: 38 LTTTQSTANLKRAEALGREKFIDHPELDLNYMSKRRVPNGPDPIHNRRAGNSGRPPGQS 96
          L    S  NLK  + + RE+ +   +LDLNYMSKRRVPNGPDPIHNRRAGNS +PPGQS
Sbjct: 2  LAAHYSLENLKHMKVIDRERLVIRRQLDLNYMSKRRVPNGPDPIHNRRAGNSRQPPGQS 60

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449458047|ref|XP_004146759.1| PREDICTED: uncharacterized protein LOC101209880 [Cucumis sativus]

 Score = 78.2 bits (191), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 33/37 (89%), Positives = 35/37 (94%)

Query: 60  DHPELDLNYMSKRRVPNGPDPIHNRRAGNSGRPPGQS 96
           DHPE  LNYMSKRRVPNGPDPIHNRRAGNSGRPPG++
Sbjct: 68  DHPEWHLNYMSKRRVPNGPDPIHNRRAGNSGRPPGKA 104

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449531450|ref|XP_004172699.1| PREDICTED: uncharacterized protein LOC101229117 [Cucumis sativus]

 Score = 76.6 bits (187), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 32/37 (86%), Positives = 35/37 (94%)

Query: 60  DHPELDLNYMSKRRVPNGPDPIHNRRAGNSGRPPGQS 96
           DHPE  LNY+SKRRVPNGPDPIHNRRAGNSGRPPG++
Sbjct: 68  DHPEWHLNYISKRRVPNGPDPIHNRRAGNSGRPPGKA 104

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255552776|ref|XP_002517431.1| CLE25, putative [Ricinus communis] gi|223543442|gb|EEF44973.1| CLE25, putative [Ricinus communis]

 Score = 75.1 bits (183), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 36/77 (46%), Positives = 48/77 (62%)

Query: 8  KALFGALAVGWLICLLLIGNLESGGNSTSTLTTTQSTANLKRAEALGREKFIDHPELDLN 67
          +ALFGA+    +IC L +G L +     +  +T  ST + +    +GR +   H  LDLN
Sbjct: 9  RALFGAVVFMGVICFLSVGILANRVTKLTARSTVLSTGSFEHWRMIGRGRHHIHQNLDLN 68

Query: 68 YMSKRRVPNGPDPIHNR 84
          Y+SKRRVPNGPDPIHNR
Sbjct: 69 YVSKRRVPNGPDPIHNR 85

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357486383|ref|XP_003613479.1| hypothetical protein MTR_5g037140 [Medicago truncatula] gi|355514814|gb|AES96437.1| hypothetical protein MTR_5g037140 [Medicago truncatula]

 Score = 75.1 bits (183), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 44/90 (48%), Positives = 55/90 (61%), Gaps = 6/90 (6%)

Query: 13  ALAVGWLICLLLIGNLESGGNSTSTLTTTQSTANLKRAEA-----LGREKFIDHP-ELDL 66
            L V   +C ++  +L SGG +  T T   S   LK  +        +   ++H  +LD 
Sbjct: 35  VLVVVGFVCFMVFSSLVSGGGTGQTTTRHWSEETLKHDDEQVVVGKDKGVVVNHDAQLDF 94

Query: 67  NYMSKRRVPNGPDPIHNRRAGNSGRPPGQS 96
           NYMSKRRVPNGPDPIHNRRAGNSGRPPGQ+
Sbjct: 95  NYMSKRRVPNGPDPIHNRRAGNSGRPPGQT 124

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	96
TAIR|locus:504955760	81	CLE25 "AT3G28455" [Arabidopsis	0.822	0.975	0.376	5.3e-08
TAIR|locus:2020683	118	CLE26 "AT1G69970" [Arabidopsis	0.791	0.644	0.345	0.00021

TAIR|locus:504955760 CLE25 "AT3G28455" [Arabidopsis thaliana (taxid:3702)]

 Score = 124 (48.7 bits), Expect = 5.3e-08, P = 5.3e-08
 Identities = 35/93 (37%), Positives = 49/93 (52%)

Query:     1 MGSSLSFKALFGALAVGWLICLLLIGNLESGGNXXXXXXXXXXXANLKRAEALGREKFID 60
             MG +   +AL G +A   LI  LL+G L +               N+K     G++    
Sbjct:     1 MGGN-GIRALVGVIASLGLIVFLLVGILANSAPSVPSSE------NVKTLRFSGKD---- 49

Query:    61 HPELDLNYMSKRRVPNGPDPIHNRRAGNSGRPP 93
                ++L ++SKR+VPNGPDPIHNR+A  S RPP
Sbjct:    50 ---VNLFHVSKRKVPNGPDPIHNRKAETSRRPP 79

GO:0005102 "receptor binding" evidence=ISS

GO:0005739 "mitochondrion" evidence=ISM

GO:0007165 "signal transduction" evidence=ISS

GO:0048046 "apoplast" evidence=RCA

GO:0033612 "receptor serine/threonine kinase binding" evidence=IPI

TAIR|locus:2020683 CLE26 "AT1G69970" [Arabidopsis thaliana (taxid:3702)]

 Score = 90 (36.7 bits), Expect = 0.00021, P = 0.00021
 Identities = 29/84 (34%), Positives = 43/84 (51%)

Query:     5 LSFKALFGALAVGWLICLLLIGNLESGGNXXXXXXXXXXXA-NLKRAEALGREKFIDHPE 63
             L F+ LF    VG ++ LL+I       N           A N+  ++A   ++ ++   
Sbjct:    11 LWFRTLF---TVG-VVTLLMIDAFVLQNNKEDDKTKEITTAVNMNNSDAKEIQQELEDGS 66

Query:    64 L--DLNYM-SKRRVPNGPDPIHNR 84
                DL+Y+ SKR+VP GPDPIHNR
Sbjct:    67 RNDDLSYVASKRKVPRGPDPIHNR 90


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.318   0.139   0.424    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0       96        85   0.00091  102 3  11 22  0.48    29
                                                     29  0.46    30


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  2
  No. of states in DFA:  519 (55 KB)
  Total size of DFA:  100 KB (2070 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  8.75u 0.21s 8.96t   Elapsed:  00:00:00
  Total cpu time:  8.75u 0.21s 8.96t   Elapsed:  00:00:00
  Start:  Fri May 10 22:34:30 2013   End:  Fri May 10 22:34:30 2013

GO:0005102 "receptor binding" evidence=ISS

GO:0005576 "extracellular region" evidence=ISM

GO:0007165 "signal transduction" evidence=ISS

GO:0048046 "apoplast" evidence=RCA

GO:0033612 "receptor serine/threonine kinase binding" evidence=IPI

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

No hit with probability above 80.00

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00