Citrus Sinensis ID: 034374

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90------
Protein Sequence
MLKECRGFKLPVSHVIHTVGPVFNFHCNPEDILRSAYKNCLSVGKANNIQYIAFPAISCGVSQYPPDEAATIAISTVKEFANDFKEVSHDKFCLMI
Secondary Structure (PSIPRED)
ccccccccccccccEEEccccccccccccHHHHHHHHHHHHHHHHHccccEEEEcccccccccccHHHHHHHHHHHHHHHHHHcccccEEEEEEEc
Secondary Structure Prediction (SSPRO)
ccEEccccccccEEEEEEccccEccccccHHHHHHHHHHHHHHHHHccccEEEEcEcccccccccHHHHHHHHHHHHHHHHHccccccEEEEEEEc
Coil and Loop (DISEMBL)
mlkecrgfklpvshvihtvgpvfnfhcnpeDILRSAYKNCLSvgkanniqyiafpaiscgvsqyppdeaATIAISTVKEFANDfkevshdkfclmi
Flexible Loop (DISEMBL)
mlkecrgfklpvshVIHTVGPVFNFHCNPEDILRSAYKNCLSVGKANNIQYIAFPAISCGVSQYPPDEAATIAISTVKEFANDFKevshdkfclmi
Low Complexity Region (SEG)
MLKECRGFKLPVSHVIHTVGPVFNFHCNPEDILRSAYKNCLSVGKANNIQYIAFPAISCGVSQYPPDEAATIAISTVKEFANDFKEVSHDKFCLMI
Disordered region (IsUnstruct)
****CRGFKLPVSHVIHTVGPVFNFHCNPEDILRSAYKNCLSVGKANNIQYIAFPAISCGVSQYPPDEAATIAISTVKEFANDFKEVSHDKFCL**
Disordered Region (DISOPRED)
MLKECRGFKLPVSHVIHTVGPVFNFHCNPEDILRSAYKNCLSVGKANNIQYIAFPAISCGVSQYPPDEAATIAISTVKEFANDFKEVSHDKFCLMI
Disordered Region (DISEMBL)
MLKECRGFKLPVSHVIHTVGPVFNFHCNPEDILRSAYKNCLSVGKANNIQYIAFPAISCGVSQYPPDEAATIAISTVKEFANDFKEVSHDKFCLMI
Disordered Region (DISPRO)
MLKECRGFKLPVSHVIHTVGPVFNFHCNPEDILRSAYKNCLSVGKANNIQYIAFPAISCGVSQYPPDEAATIAISTVKEFANDFKEVSHDKFCLMI
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MLKECRGFKLPVSHVIHTVGPVFNFHCNPEDILRSAYKNCLSVGKANNIQYIAFPAISCGVSQYPPDEAATIAISTVKEFANDFKEVSHDKFCLMI
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	96	2.2.26 [Sep-21-2011]
Q985D2	176	Macro domain-containing p	yes	no	0.781	0.426	0.486	2e-14
A1Z1Q3	448	O-acetyl-ADP-ribose deace	yes	no	0.989	0.212	0.394	5e-14
Q9HXU7	173	Macro domain-containing p	yes	no	0.781	0.433	0.473	7e-14
Q8KAE4	172	Macro domain-containing p	yes	no	0.947	0.529	0.413	9e-14
Q6PAV8	418	O-acetyl-ADP-ribose deace	N/A	no	1.0	0.229	0.362	2e-13
Q9HJ67	196	Uncharacterized protein T	yes	no	0.822	0.403	0.45	2e-13
Q3UYG8	475	O-acetyl-ADP-ribose deace	yes	no	0.989	0.2	0.377	2e-13
D3RKJ0	175	O-acetyl-ADP-ribose deace	yes	no	0.864	0.474	0.488	5e-13
B5XXK9	175	O-acetyl-ADP-ribose deace	yes	no	0.864	0.474	0.488	5e-13
Q8Y2K1	171	Macro domain-containing p	yes	no	0.843	0.473	0.426	5e-13

>sp|Q985D2|Y7730_RHILO Macro domain-containing protein mll7730 OS=Rhizobium loti (strain MAFF303099) GN=mll7730 PE=4 SV=1

 Score = 77.8 bits (190), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 37/76 (48%), Positives = 51/76 (67%), Gaps = 1/76 (1%)

Query: 3   KECRGFKLPVSHVIHTVGPVFNFHCNPE-DILRSAYKNCLSVGKANNIQYIAFPAISCGV 61
           K  +G+KLP  H+IHTVGPV+      E ++L S Y++ L +  AN+ + +AFPAIS GV
Sbjct: 65  KITKGYKLPARHIIHTVGPVWQGGGKGEAELLASCYRSSLELAAANDCRSVAFPAISTGV 124

Query: 62  SQYPPDEAATIAISTV 77
            +YP DEA  IA+ TV
Sbjct: 125 YRYPKDEATGIAVGTV 140

Rhizobium loti (strain MAFF303099) (taxid: 266835)

>sp|A1Z1Q3|MACD2_HUMAN O-acetyl-ADP-ribose deacetylase MACROD2 OS=Homo sapiens GN=MACROD2 PE=1 SV=1

 Score = 76.3 bits (186), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 45/114 (39%), Positives = 64/114 (56%), Gaps = 19/114 (16%)

Query: 1   MLKECR--------------GFKLPVSHVIHTVGPVFNFHCN---PEDILRSAYKNCLSV 43
           +L ECR              G+ LP  +VIHTVGP+   H N    ED L + YK+ L +
Sbjct: 113 LLAECRNLNGCDTGHAKITCGYDLPAKYVIHTVGPIARGHINGSHKED-LANCYKSSLKL 171

Query: 44  GKANNIQYIAFPAISCGVSQYPPDEAATIAISTVKEF-ANDFKEVSHDKFCLMI 96
            K NNI+ +AFP IS G+  +P + AA IA++T+KE+ A +  EV    FC+ +
Sbjct: 172 VKENNIRSVAFPCISTGIYGFPNEPAAVIALNTIKEWLAKNHHEVDRIIFCVFL 225

Deacetylates O-acetyl-ADP ribose, a signaling molecule generated by the deacetylation of acetylated lysine residues in histones and other proteins.

Homo sapiens (taxid: 9606)

EC: 3

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: -

>sp|Q9HXU7|Y3693_PSEAE Macro domain-containing protein PA3693 OS=Pseudomonas aeruginosa (strain ATCC 15692 / PAO1 / 1C / PRS 101 / LMG 12228) GN=PA3693 PE=4 SV=1

 Score = 75.9 bits (185), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 36/76 (47%), Positives = 50/76 (65%), Gaps = 1/76 (1%)

Query: 3   KECRGFKLPVSHVIHTVGPVFNFHCNPE-DILRSAYKNCLSVGKANNIQYIAFPAISCGV 61
           K  RGF+LP +HVIHTVGPV+    N E ++L S Y+  L++ +      +AFPAISCG+
Sbjct: 61  KITRGFRLPAAHVIHTVGPVWRGGDNGEAELLASCYRRSLALAEQAGAASVAFPAISCGI 120

Query: 62  SQYPPDEAATIAISTV 77
             YP ++AA IA+  V
Sbjct: 121 YGYPLEQAAAIAVEEV 136

Pseudomonas aeruginosa (strain ATCC 15692 / PAO1 / 1C / PRS 101 / LMG 12228) (taxid: 208964)

>sp|Q8KAE4|Y2219_CHLTE Macro domain-containing protein CT2219 OS=Chlorobium tepidum (strain ATCC 49652 / DSM 12025 / TLS) GN=CT2219 PE=4 SV=1

 Score = 75.5 bits (184), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 38/92 (41%), Positives = 60/92 (65%), Gaps = 1/92 (1%)

Query: 3   KECRGFKLPVSHVIHTVGPVFNFHCNPE-DILRSAYKNCLSVGKANNIQYIAFPAISCGV 61
           K  +G++LP + VIHTVGPV++   + E ++L S Y+N L +   ++ + IAFP+IS G+
Sbjct: 64  KITKGYRLPATFVIHTVGPVWHGGNHGEAELLASCYRNSLKLAIEHHCRTIAFPSISTGI 123

Query: 62  SQYPPDEAATIAISTVKEFANDFKEVSHDKFC 93
             YP ++AA IAI+TV+E   D + +    FC
Sbjct: 124 YGYPVEQAAAIAITTVREMLADERGIEKVIFC 155

Chlorobium tepidum (strain ATCC 49652 / DSM 12025 / TLS) (taxid: 194439)

>sp|Q6PAV8|MACD2_XENLA O-acetyl-ADP-ribose deacetylase MACROD2 OS=Xenopus laevis GN=macrod2 PE=2 SV=1

 Score = 74.3 bits (181), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 41/113 (36%), Positives = 62/113 (54%), Gaps = 17/113 (15%)

Query: 1   MLKECR--------------GFKLPVSHVIHTVGPVFNFHCNP--EDILRSAYKNCLSVG 44
           +L ECR              G++LP  +VIHTVGP+   H  P  +  L S Y + L++ 
Sbjct: 111 LLAECRELGGCETGQAKITCGYELPAKYVIHTVGPIARGHITPNHKQDLASCYNSSLTLA 170

Query: 45  KANNIQYIAFPAISCGVSQYPPDEAATIAISTVKEFANDFKE-VSHDKFCLMI 96
             N+I+ IAFP IS G+  YP + AA +A++TVKEF    ++ +    FC+ +
Sbjct: 171 TENDIRTIAFPCISTGIYGYPNEPAANVALTTVKEFLKKNRDKIDRVIFCVFL 223

Deacetylates O-acetyl-ADP ribose, a signaling molecule generated by the deacetylation of acetylated lysine residues in histones and other proteins.

Xenopus laevis (taxid: 8355)

EC: 3

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: -

>sp|Q9HJ67|Y1105_THEAC Uncharacterized protein Ta1105 OS=Thermoplasma acidophilum (strain ATCC 25905 / DSM 1728 / JCM 9062 / NBRC 15155 / AMRC-C165) GN=Ta1105 PE=4 SV=2

 Score = 74.3 bits (181), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 36/80 (45%), Positives = 50/80 (62%), Gaps = 1/80 (1%)

Query: 5   CRGFKLPVSHVIHTVGPVFNFHCNPED-ILRSAYKNCLSVGKANNIQYIAFPAISCGVSQ 63
            RG++L  SH+IHTVGPV+    N ED +L  +Y++CL + +   I  IAFPA+S G   
Sbjct: 76  TRGYRLKASHIIHTVGPVWMGGRNGEDDVLYRSYRSCLDLAREFGIHDIAFPALSTGAYG 135

Query: 64  YPPDEAATIAISTVKEFAND 83
           +P D A  IAI +V +F  D
Sbjct: 136 FPFDRAERIAIRSVIDFLKD 155

Thermoplasma acidophilum (strain ATCC 25905 / DSM 1728 / JCM 9062 / NBRC 15155 / AMRC-C165) (taxid: 273075)

>sp|Q3UYG8|MACD2_MOUSE O-acetyl-ADP-ribose deacetylase MACROD2 OS=Mus musculus GN=Macrod2 PE=2 SV=1

 Score = 74.3 bits (181), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 43/114 (37%), Positives = 64/114 (56%), Gaps = 19/114 (16%)

Query: 1   MLKECR--------------GFKLPVSHVIHTVGPVFNFHCN---PEDILRSAYKNCLSV 43
           +L ECR              G+ LP  +VIHTVGP+   H N    ED L + Y++ L +
Sbjct: 113 LLAECRNLNGCETGHAKITCGYDLPAKYVIHTVGPIARGHINGSHKED-LANCYQSSLKL 171

Query: 44  GKANNIQYIAFPAISCGVSQYPPDEAATIAISTVKEF-ANDFKEVSHDKFCLMI 96
            K NN++ +AFP IS G+  +P + AA IA+ T+KE+ A + +EV    FC+ +
Sbjct: 172 VKENNLRSVAFPCISTGIYGFPNEPAAVIALGTIKEWLAKNHQEVDRIIFCVFL 225

Deacetylates O-acetyl-ADP ribose, a signaling molecule generated by the deacetylation of acetylated lysine residues in histones and other proteins.

Mus musculus (taxid: 10090)

EC: 3

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: -

>sp|D3RKJ0|YMDB_KLEVT O-acetyl-ADP-ribose deacetylase OS=Klebsiella variicola (strain At-22) GN=ymdB PE=3 SV=1

 Score = 73.2 bits (178), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 41/84 (48%), Positives = 49/84 (58%), Gaps = 1/84 (1%)

Query: 10  LPVSHVIHTVGPVFNFHCNPE-DILRSAYKNCLSVGKANNIQYIAFPAISCGVSQYPPDE 68
           LP S VIHTVGPV++     E   L  AYKN L +  ANN + IAFPAIS GV  YP +E
Sbjct: 73  LPASAVIHTVGPVWHGGDRMEAQTLADAYKNSLQLAAANNYRSIAFPAISTGVYGYPKEE 132

Query: 69  AATIAISTVKEFANDFKEVSHDKF 92
           AA IA+ TV  F   +  +    F
Sbjct: 133 AAEIAVRTVTAFLTRYNPLERVLF 156

Deacetylates O-acetyl-ADP ribose. Down-regulates ribonuclease 3 (RNase III) activity. Acts by interacting directly with the region of the ribonuclease that is required for dimerization/activation.

Klebsiella variicola (strain At-22) (taxid: 640131)

EC: 3

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: -

>sp|B5XXK9|YMDB_KLEP3 O-acetyl-ADP-ribose deacetylase OS=Klebsiella pneumoniae (strain 342) GN=ymdB PE=3 SV=1

 Score = 73.2 bits (178), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 41/84 (48%), Positives = 49/84 (58%), Gaps = 1/84 (1%)

Query: 10  LPVSHVIHTVGPVFNFHCNPE-DILRSAYKNCLSVGKANNIQYIAFPAISCGVSQYPPDE 68
           LP S VIHTVGPV++     E   L  AYKN L +  ANN + IAFPAIS GV  YP +E
Sbjct: 73  LPASAVIHTVGPVWHGGDRMEAQTLADAYKNSLQLAAANNYRSIAFPAISTGVYGYPKEE 132

Query: 69  AATIAISTVKEFANDFKEVSHDKF 92
           AA IA+ TV  F   +  +    F
Sbjct: 133 AAEIAVRTVTAFLTRYNPLERVLF 156

Deacetylates O-acetyl-ADP ribose. Down-regulates ribonuclease 3 (RNase III) activity. Acts by interacting directly with the region of the ribonuclease that is required for dimerization/activation.

Klebsiella pneumoniae (strain 342) (taxid: 507522)

EC: 3

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: -

>sp|Q8Y2K1|Y334_RALSO Macro domain-containing protein RSc0334 OS=Ralstonia solanacearum (strain GMI1000) GN=RSc0334 PE=4 SV=1

 Score = 72.8 bits (177), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 35/82 (42%), Positives = 52/82 (63%), Gaps = 1/82 (1%)

Query: 7   GFKLPVSHVIHTVGPVFNFHCNPEDILRSA-YKNCLSVGKANNIQYIAFPAISCGVSQYP 65
           GF LP  ++IHTVGP++      E  L +A Y+N L++ K ++++ IAFP IS GV  +P
Sbjct: 69  GFLLPARYIIHTVGPIWRGGRQDEAALLAACYRNSLALAKQHDVRTIAFPCISTGVYGFP 128

Query: 66  PDEAATIAISTVKEFANDFKEV 87
           P  AA IA+ TV+E   D  ++
Sbjct: 129 PQLAAPIAVRTVREHGADLDDI 150

Ralstonia solanacearum (strain GMI1000) (taxid: 267608)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	96
225448685	231	PREDICTED: macro domain-containing prote	0.854	0.354	0.707	2e-27
297736490	190	unnamed protein product [Vitis vinifera]	0.854	0.431	0.707	2e-27
449457407	247	PREDICTED: macro domain-containing prote	0.843	0.327	0.703	7e-27
449491648	247	PREDICTED: macro domain-containing prote	0.843	0.327	0.703	7e-27
307135847	255	appr-1-p processing enzyme family protei	0.833	0.313	0.7	1e-26
357436403	233	Appr-1-p processing enzyme family protei	0.843	0.347	0.716	2e-26
356552646	236	PREDICTED: macro domain-containing prote	0.843	0.343	0.716	6e-26
255636888	201	unknown [Glycine max]	0.843	0.402	0.716	8e-26
241865263	139	appr-1-p processing enzyme family protei	0.833	0.575	0.712	4e-25
297827693	256	hypothetical protein ARALYDRAFT_483117 [	0.843	0.316	0.654	1e-24

>gi|225448685|ref|XP_002280352.1| PREDICTED: macro domain-containing protein VPA0103 [Vitis vinifera] gi|147769460|emb|CAN70345.1| hypothetical protein VITISV_012577 [Vitis vinifera]

 Score =  126 bits (316), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 58/82 (70%), Positives = 67/82 (81%)

Query: 6   RGFKLPVSHVIHTVGPVFNFHCNPEDILRSAYKNCLSVGKANNIQYIAFPAISCGVSQYP 65
           +GFKLP +HVIHTVGP+++   NPE  L+SAY NCLS+ K NN+QYIAFPAISCGV  YP
Sbjct: 127 QGFKLPAAHVIHTVGPIYDVDSNPEASLKSAYANCLSLAKENNVQYIAFPAISCGVFGYP 186

Query: 66  PDEAATIAISTVKEFANDFKEV 87
            DEAAT+AISTVKEF  D KEV
Sbjct: 187 YDEAATVAISTVKEFGKDLKEV 208

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297736490|emb|CBI25361.3| unnamed protein product [Vitis vinifera]

 Score =  126 bits (316), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 58/82 (70%), Positives = 67/82 (81%)

Query: 6   RGFKLPVSHVIHTVGPVFNFHCNPEDILRSAYKNCLSVGKANNIQYIAFPAISCGVSQYP 65
           +GFKLP +HVIHTVGP+++   NPE  L+SAY NCLS+ K NN+QYIAFPAISCGV  YP
Sbjct: 86  QGFKLPAAHVIHTVGPIYDVDSNPEASLKSAYANCLSLAKENNVQYIAFPAISCGVFGYP 145

Query: 66  PDEAATIAISTVKEFANDFKEV 87
            DEAAT+AISTVKEF  D KEV
Sbjct: 146 YDEAATVAISTVKEFGKDLKEV 167

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449457407|ref|XP_004146440.1| PREDICTED: macro domain-containing protein VPA0103-like [Cucumis sativus]

 Score =  124 bits (311), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 57/81 (70%), Positives = 68/81 (83%)

Query: 7   GFKLPVSHVIHTVGPVFNFHCNPEDILRSAYKNCLSVGKANNIQYIAFPAISCGVSQYPP 66
           GF+LP SHVIHTVGP++N   NP+ +LRSAY+N L+V K NNIQYIAFPAISCGV +YP 
Sbjct: 144 GFQLPASHVIHTVGPIYNASRNPQALLRSAYRNSLAVAKENNIQYIAFPAISCGVFRYPY 203

Query: 67  DEAATIAISTVKEFANDFKEV 87
           DEAATIA+ST+KEF+   KEV
Sbjct: 204 DEAATIALSTIKEFSQGLKEV 224

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449491648|ref|XP_004158963.1| PREDICTED: macro domain-containing protein VPA0103-like [Cucumis sativus]

 Score =  124 bits (311), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 57/81 (70%), Positives = 68/81 (83%)

Query: 7   GFKLPVSHVIHTVGPVFNFHCNPEDILRSAYKNCLSVGKANNIQYIAFPAISCGVSQYPP 66
           GF+LP SHVIHTVGP++N   NP+ +LRSAY+N L+V K NNIQYIAFPAISCGV +YP 
Sbjct: 144 GFQLPASHVIHTVGPIYNASRNPQALLRSAYRNSLAVAKENNIQYIAFPAISCGVFRYPY 203

Query: 67  DEAATIAISTVKEFANDFKEV 87
           DEAATIA+ST+KEF+   KEV
Sbjct: 204 DEAATIALSTIKEFSQGLKEV 224

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|307135847|gb|ADN33717.1| appr-1-p processing enzyme family protein [Cucumis melo subsp. melo]

 Score =  123 bits (309), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 56/80 (70%), Positives = 67/80 (83%)

Query: 7   GFKLPVSHVIHTVGPVFNFHCNPEDILRSAYKNCLSVGKANNIQYIAFPAISCGVSQYPP 66
           GF+LP SHVIHTVGP++N   NP+ +LRSAY+N L+V K NNIQYIAFPAISCGV +YP 
Sbjct: 155 GFRLPASHVIHTVGPIYNASRNPQALLRSAYRNSLAVAKENNIQYIAFPAISCGVFRYPY 214

Query: 67  DEAATIAISTVKEFANDFKE 86
           DEAATIA+ST+KEF+   KE
Sbjct: 215 DEAATIALSTIKEFSQGLKE 234

Source: Cucumis melo subsp. melo

Species: Cucumis melo

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357436403|ref|XP_003588477.1| Appr-1-p processing enzyme family protein [Medicago truncatula] gi|355477525|gb|AES58728.1| Appr-1-p processing enzyme family protein [Medicago truncatula] gi|388499270|gb|AFK37701.1| unknown [Medicago truncatula]

 Score =  123 bits (308), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 58/81 (71%), Positives = 64/81 (79%)

Query: 7   GFKLPVSHVIHTVGPVFNFHCNPEDILRSAYKNCLSVGKANNIQYIAFPAISCGVSQYPP 66
           GF LP SHVIHTVGP+++   NP   L SAY+N L V K NNIQYIAFPAISCGV  YP 
Sbjct: 130 GFLLPASHVIHTVGPIYDVDSNPAASLASAYRNSLRVAKENNIQYIAFPAISCGVYGYPY 189

Query: 67  DEAATIAISTVKEFANDFKEV 87
           DEAAT+AIST+KEF NDFKEV
Sbjct: 190 DEAATVAISTIKEFQNDFKEV 210

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356552646|ref|XP_003544674.1| PREDICTED: macro domain-containing protein XCC3184-like [Glycine max]

 Score =  121 bits (303), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 58/81 (71%), Positives = 64/81 (79%)

Query: 7   GFKLPVSHVIHTVGPVFNFHCNPEDILRSAYKNCLSVGKANNIQYIAFPAISCGVSQYPP 66
           GF LP SHVIHTVGP+++   NP   L SAY+N L V K NNIQYIAFPAISCGV  YP 
Sbjct: 133 GFMLPASHVIHTVGPIYSADINPAASLASAYRNTLMVAKENNIQYIAFPAISCGVYGYPY 192

Query: 67  DEAATIAISTVKEFANDFKEV 87
           DEAAT+AIST+KEF NDFKEV
Sbjct: 193 DEAATVAISTIKEFPNDFKEV 213

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255636888|gb|ACU18777.1| unknown [Glycine max]

 Score =  120 bits (302), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 58/81 (71%), Positives = 64/81 (79%)

Query: 7   GFKLPVSHVIHTVGPVFNFHCNPEDILRSAYKNCLSVGKANNIQYIAFPAISCGVSQYPP 66
           GF LP SHVIHTVGP+++   NP   L SAY+N L V K NNIQYIAFPAISCGV  YP 
Sbjct: 98  GFMLPASHVIHTVGPIYSADINPAASLASAYRNTLMVAKENNIQYIAFPAISCGVYGYPY 157

Query: 67  DEAATIAISTVKEFANDFKEV 87
           DEAAT+AIST+KEF NDFKEV
Sbjct: 158 DEAATVAISTIKEFPNDFKEV 178

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|241865263|gb|ACS68709.1| appr-1-p processing enzyme family protein [Sonneratia alba] gi|241865496|gb|ACS68780.1| appr-1-p processing enzyme family protein [Sonneratia alba]

 Score =  118 bits (296), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 57/80 (71%), Positives = 66/80 (82%)

Query: 7   GFKLPVSHVIHTVGPVFNFHCNPEDILRSAYKNCLSVGKANNIQYIAFPAISCGVSQYPP 66
           GFKLP SHVIHTVGP+++   +PE  LRSAYKN L+V K NNIQYIAFPAISCGV +YP 
Sbjct: 60  GFKLPASHVIHTVGPIYDTDKDPEASLRSAYKNSLAVAKENNIQYIAFPAISCGVFRYPY 119

Query: 67  DEAATIAISTVKEFANDFKE 86
           DEAA +AISTVKEF++  KE
Sbjct: 120 DEAAMVAISTVKEFSDGIKE 139

Source: Sonneratia alba

Species: Sonneratia alba

Genus: Sonneratia

Family: Lythraceae

Order: Myrtales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297827693|ref|XP_002881729.1| hypothetical protein ARALYDRAFT_483117 [Arabidopsis lyrata subsp. lyrata] gi|297327568|gb|EFH57988.1| hypothetical protein ARALYDRAFT_483117 [Arabidopsis lyrata subsp. lyrata]

 Score =  116 bits (291), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 53/81 (65%), Positives = 64/81 (79%)

Query: 7   GFKLPVSHVIHTVGPVFNFHCNPEDILRSAYKNCLSVGKANNIQYIAFPAISCGVSQYPP 66
           GF LP S VIHTVGP+++   NP++ L +AYKN L V K NNI+YIAFPAISCG+  YP 
Sbjct: 152 GFNLPASRVIHTVGPIYDSDVNPQESLTNAYKNSLRVAKENNIKYIAFPAISCGIYGYPF 211

Query: 67  DEAATIAISTVKEFANDFKEV 87
           DEAA I IST+K+F+NDFKEV
Sbjct: 212 DEAAAIGISTIKQFSNDFKEV 232

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	96
TAIR|locus:2061923	257	AT2G40600 "AT2G40600" [Arabido	0.843	0.315	0.629	4.2e-24
UNIPROTKB|Q74FT0	173	ymdB "O-acetyl-ADP-ribose deac	0.843	0.468	0.463	1.8e-14
TIGR_CMR|GSU_0526	173	GSU_0526 "conserved hypothetic	0.843	0.468	0.463	1.8e-14
UNIPROTKB|A1Z1Q3	448	MACROD2 "O-acetyl-ADP-ribose d	0.927	0.198	0.436	4e-14
MGI|MGI:1920149	475	Macrod2 "MACRO domain containi	0.927	0.187	0.414	1.6e-13
RGD|1591318	531	Macrod2 "MACRO domain containi	0.927	0.167	0.414	2.5e-13
ZFIN|ZDB-GENE-040912-100	248	macrod1 "MACRO domain containi	0.927	0.358	0.369	5.6e-13
ZFIN|ZDB-GENE-040426-1490	452	macrod2 "MACRO domain containi	0.937	0.199	0.387	1.3e-11
UNIPROTKB|Q3AEI4	181	CHY_0594 "Putative uncharacter	0.739	0.392	0.458	2.2e-11
TIGR_CMR|CHY_0594	181	CHY_0594 "conserved hypothetic	0.739	0.392	0.458	2.2e-11

TAIR|locus:2061923 AT2G40600 "AT2G40600" [Arabidopsis thaliana (taxid:3702)]

 Score = 276 (102.2 bits), Expect = 4.2e-24, P = 4.2e-24
 Identities = 51/81 (62%), Positives = 63/81 (77%)

Query:     7 GFKLPVSHVIHTVGPVFNFHCNPEDILRSAYKNCLSVGKANNIQYIAFPAISCGVSQYPP 66
             GF LP S VIHTVGP+++   NP++ L ++YKN L V K NNI+YIAFPAISCG+  YP 
Sbjct:   153 GFNLPASRVIHTVGPIYDSDVNPQESLTNSYKNSLRVAKENNIKYIAFPAISCGIYGYPF 212

Query:    67 DEAATIAISTVKEFANDFKEV 87
             DEAA I IST+K+F+ DFKEV
Sbjct:   213 DEAAAIGISTIKQFSTDFKEV 233

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0005829 "cytosol" evidence=IDA

UNIPROTKB|Q74FT0 ymdB "O-acetyl-ADP-ribose deacetylase" [Geobacter sulfurreducens PCA (taxid:243231)]

 Score = 185 (70.2 bits), Expect = 1.8e-14, P = 1.8e-14
 Identities = 38/82 (46%), Positives = 50/82 (60%)

Query:     7 GFKLPVSHVIHTVGPVFNFHCNPE-DILRSAYKNCLSVGKANNIQYIAFPAISCGVSQYP 65
             G++LP  HVIHTVGPV++     E D+LRS Y+    V     ++ IAFPAISCGV  YP
Sbjct:    66 GYRLPAKHVIHTVGPVWHGGARGEPDLLRSCYRRSFEVAHGAGLRSIAFPAISCGVYGYP 125

Query:    66 PDEAATIAISTVKEFANDFKEV 87
              DEA +IA+   K     + E+
Sbjct:   126 LDEACSIALEETKAALERYPEL 147

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TIGR_CMR|GSU_0526 GSU_0526 "conserved hypothetical protein" [Geobacter sulfurreducens PCA (taxid:243231)]

 Score = 185 (70.2 bits), Expect = 1.8e-14, P = 1.8e-14
 Identities = 38/82 (46%), Positives = 50/82 (60%)

Query:     7 GFKLPVSHVIHTVGPVFNFHCNPE-DILRSAYKNCLSVGKANNIQYIAFPAISCGVSQYP 65
             G++LP  HVIHTVGPV++     E D+LRS Y+    V     ++ IAFPAISCGV  YP
Sbjct:    66 GYRLPAKHVIHTVGPVWHGGARGEPDLLRSCYRRSFEVAHGAGLRSIAFPAISCGVYGYP 125

Query:    66 PDEAATIAISTVKEFANDFKEV 87
              DEA +IA+   K     + E+
Sbjct:   126 LDEACSIALEETKAALERYPEL 147

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|A1Z1Q3 MACROD2 "O-acetyl-ADP-ribose deacetylase MACROD2" [Homo sapiens (taxid:9606)]

 Score = 189 (71.6 bits), Expect = 4.0e-14, P = 4.0e-14
 Identities = 41/94 (43%), Positives = 59/94 (62%)

Query:     7 GFKLPVSHVIHTVGPVFNFHCN---PEDILRSAYKNCLSVGKANNIQYIAFPAISCGVSQ 63
             G+ LP  +VIHTVGP+   H N    ED L + YK+ L + K NNI+ +AFP IS G+  
Sbjct:   133 GYDLPAKYVIHTVGPIARGHINGSHKED-LANCYKSSLKLVKENNIRSVAFPCISTGIYG 191

Query:    64 YPPDEAATIAISTVKEF-ANDFKEVSHDKFCLMI 96
             +P + AA IA++T+KE+ A +  EV    FC+ +
Sbjct:   192 FPNEPAAVIALNTIKEWLAKNHHEVDRIIFCVFL 225

GO:0007420 "brain development" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

GO:0042278 "purine nucleoside metabolic process" evidence=IDA

GO:0019213 "deacetylase activity" evidence=IDA

MGI|MGI:1920149 Macrod2 "MACRO domain containing 2" [Mus musculus (taxid:10090)]

 Score = 184 (69.8 bits), Expect = 1.6e-13, P = 1.6e-13
 Identities = 39/94 (41%), Positives = 59/94 (62%)

Query:     7 GFKLPVSHVIHTVGPVFNFHCN---PEDILRSAYKNCLSVGKANNIQYIAFPAISCGVSQ 63
             G+ LP  +VIHTVGP+   H N    ED L + Y++ L + K NN++ +AFP IS G+  
Sbjct:   133 GYDLPAKYVIHTVGPIARGHINGSHKED-LANCYQSSLKLVKENNLRSVAFPCISTGIYG 191

Query:    64 YPPDEAATIAISTVKEF-ANDFKEVSHDKFCLMI 96
             +P + AA IA+ T+KE+ A + +EV    FC+ +
Sbjct:   192 FPNEPAAVIALGTIKEWLAKNHQEVDRIIFCVFL 225

GO:0005575 "cellular_component" evidence=ND

GO:0008152 "metabolic process" evidence=IEA

GO:0016787 "hydrolase activity" evidence=IEA

GO:0019213 "deacetylase activity" evidence=ISO

GO:0042278 "purine nucleoside metabolic process" evidence=ISO

RGD|1591318 Macrod2 "MACRO domain containing 2" [Rattus norvegicus (taxid:10116)]

 Score = 183 (69.5 bits), Expect = 2.5e-13, P = 2.5e-13
 Identities = 39/94 (41%), Positives = 59/94 (62%)

Query:     7 GFKLPVSHVIHTVGPVFNFHCN---PEDILRSAYKNCLSVGKANNIQYIAFPAISCGVSQ 63
             G+ LP  +VIHTVGP+   H N    ED L + Y++ L + K NN++ +AFP IS G+  
Sbjct:   188 GYDLPAKYVIHTVGPIARGHINGSHKED-LANCYQSSLKLVKENNLRSVAFPCISTGIYG 246

Query:    64 YPPDEAATIAISTVKEF-ANDFKEVSHDKFCLMI 96
             +P + AA IA+ T+KE+ A + +EV    FC+ +
Sbjct:   247 FPNEPAAIIALGTIKEWLAKNHQEVDRIIFCVFL 280

GO:0019213 "deacetylase activity" evidence=ISO

GO:0042278 "purine nucleoside metabolic process" evidence=ISO

ZFIN|ZDB-GENE-040912-100 macrod1 "MACRO domain containing 1" [Danio rerio (taxid:7955)]

 Score = 171 (65.3 bits), Expect = 5.6e-13, P = 5.6e-13
 Identities = 34/92 (36%), Positives = 54/92 (58%)

Query:     8 FKLPVSHVIHTVGPVFNFHCNP--EDILRSAYKNCLSVGKANNIQYIAFPAISCGVSQYP 65
             + LP  +VIHTVGP+ +       E+ LR+ Y NCL     ++++ +AFP IS GV  YP
Sbjct:   132 YGLPARYVIHTVGPIVHDSVGEREEEALRNCYYNCLHTATKHHLRTVAFPCISTGVYGYP 191

Query:    66 PDEAATIAISTVKEFANDFKE-VSHDKFCLMI 96
             PD+A  +A+ TV+++     E +    FC+ +
Sbjct:   192 PDQAVEVALKTVRDYLEQNPEKLDRVIFCVFL 223

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0003674 "molecular_function" evidence=ND

ZFIN|ZDB-GENE-040426-1490 macrod2 "MACRO domain containing 2" [Danio rerio (taxid:7955)]

 Score = 166 (63.5 bits), Expect = 1.3e-11, P = 1.3e-11
 Identities = 36/93 (38%), Positives = 55/93 (59%)

Query:     7 GFKLPVSHVIHTVGPVF--NFHCNPEDILRSAYKNCLSVGKANNIQYIAFPAISCGVSQY 64
             G+ LP  +VIHTVGP+   N   +  D L S Y + L + K NN++ +AFP IS G+  +
Sbjct:   124 GYDLPAKYVIHTVGPIARGNVGQSQRDDLESCYYSSLKLMKDNNLRSVAFPCISTGIYGF 183

Query:    65 PPDEAATIAISTVKEFANDFK-EVSHDKFCLMI 96
             P + AA IA+ TV+E+    + E+    FC+ +
Sbjct:   184 PNEPAAEIALKTVQEWIEKHQDEIDRVIFCVFL 216

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0005575 "cellular_component" evidence=ND

UNIPROTKB|Q3AEI4 CHY_0594 "Putative uncharacterized protein" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)]

 Score = 156 (60.0 bits), Expect = 2.2e-11, P = 2.2e-11
 Identities = 33/72 (45%), Positives = 45/72 (62%)

Query:    10 LPVSHVIHTVGPVFNF-HCNPEDILRSAYKNCLSVGKANNIQYIAFPAISCGVSQYPPDE 68
             LP  +VIHTVGP++       E+ LR+AY N L + K  N++ IAFP+IS G   YP  +
Sbjct:    78 LPAKYVIHTVGPIYRGGQKGEENTLRNAYLNSLKLAKQLNVKTIAFPSISTGAYGYPVKD 137

Query:    69 AATIAISTVKEF 80
             AA +A+  V EF
Sbjct:   138 AARVALKAVIEF 149

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TIGR_CMR|CHY_0594 CHY_0594 "conserved hypothetical protein" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)]

 Score = 156 (60.0 bits), Expect = 2.2e-11, P = 2.2e-11
 Identities = 33/72 (45%), Positives = 45/72 (62%)

Query:    10 LPVSHVIHTVGPVFNF-HCNPEDILRSAYKNCLSVGKANNIQYIAFPAISCGVSQYPPDE 68
             LP  +VIHTVGP++       E+ LR+AY N L + K  N++ IAFP+IS G   YP  +
Sbjct:    78 LPAKYVIHTVGPIYRGGQKGEENTLRNAYLNSLKLAKQLNVKTIAFPSISTGAYGYPVKD 137

Query:    69 AATIAISTVKEF 80
             AA +A+  V EF
Sbjct:   138 AARVALKAVIEF 149

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	96
cd02908	165	cd02908, Macro_Appr_pase_like, Macro domain, Appr-	3e-35
PRK00431	177	PRK00431, PRK00431, RNase III inhibitor; Provision	2e-26
pfam01661	117	pfam01661, Macro, Macro domain	1e-23
PRK04143	264	PRK04143, PRK04143, hypothetical protein; Provisio	3e-22
COG2110	179	COG2110, COG2110, Predicted phosphatase homologous	3e-20
cd02906	147	cd02906, Macro_1, Macro domain, Unknown family 1	3e-18
cd02907	175	cd02907, Macro_Af1521_BAL_like, Macro domain, Af15	2e-17
cd02905	140	cd02905, Macro_GDAP2_like, Macro domain, GDAP2_lik	3e-17
smart00506	133	smart00506, A1pp, Appr-1"-p processing enzyme	1e-15
cd02749	147	cd02749, Macro, Macro domain, a high-affinity ADP-	3e-11
cd02903	137	cd02903, Macro_BAL_like, Macro domain, BAL_like fa	8e-09
cd03330	133	cd03330, Macro_2, Macro domain, Unknown family 2	1e-06
cd02904	186	cd02904, Macro_H2A_like, Macro domain, Macro_H2A_l	1e-04

>gnl|CDD|239236 cd02908, Macro_Appr_pase_like, Macro domain, Appr-1"-pase_like family

 Score =  117 bits (295), Expect = 3e-35
 Identities = 44/109 (40%), Positives = 60/109 (55%), Gaps = 15/109 (13%)

Query: 1   MLKECR--------------GFKLPVSHVIHTVGPVFN-FHCNPEDILRSAYKNCLSVGK 45
           +L+ECR              G+ LP  +VIHTVGPV+     N  ++L S Y+N L + +
Sbjct: 43  LLEECRELRGCPTGEAVITSGYNLPAKYVIHTVGPVWRGGQHNEAELLASCYRNSLELAR 102

Query: 46  ANNIQYIAFPAISCGVSQYPPDEAATIAISTVKEFANDFKEVSHDKFCL 94
            N ++ IAFPAIS GV  YP DEAA IA+ TV+EF  +   +    F  
Sbjct: 103 ENGLRSIAFPAISTGVYGYPLDEAARIALKTVREFLEEHDAIERVIFVC 151

The macro domain is a high-affinity ADP-ribose binding module found in a variety of proteins as a stand-alone domain or in combination with other domains like in histone macroH2A and some PARPs (poly ADP-ribose polymerases). Some macro domains recognize poly ADP-ribose as a ligand. Previously identified as displaying an Appr-1"-p (ADP-ribose-1"-monophosphate) processing activity, the macro domain may play roles in distinct ADP-ribose pathways, such as the ADP-ribosylation of proteins, an important post-translational modification which occurs in DNA repair, transcription, chromatin biology, and long-term memory formation, among other processes. This family is composed of uncharacterized proteins that show similarity to Appr-1"-pase, containing conserved putative active site residues. Appr-1"-pase is a phosphatase specific for ADP-ribose-1"-monophosphate. Length = 165

>gnl|CDD|234759 PRK00431, PRK00431, RNase III inhibitor; Provisional

 Score = 95.7 bits (239), Expect = 2e-26
 Identities = 42/112 (37%), Positives = 56/112 (50%), Gaps = 19/112 (16%)

Query: 2   LKECR------------------GFKLPVSHVIHTVGPVFNF-HCNPEDILRSAYKNCLS 42
           L+ECR                    +LP  +VIHTVGPV+     N  ++L SAY+N L 
Sbjct: 47  LEECRELRQQQGPCPTGEAVITSAGRLPAKYVIHTVGPVWRGGEDNEAELLASAYRNSLR 106

Query: 43  VGKANNIQYIAFPAISCGVSQYPPDEAATIAISTVKEFANDFKEVSHDKFCL 94
           +     ++ IAFPAIS GV  YP ++AA IA+ TV+EF    K      F  
Sbjct: 107 LAAELGLRSIAFPAISTGVYGYPLEDAARIAVKTVREFLTRHKSPEEVYFVC 158

Length = 177

>gnl|CDD|216634 pfam01661, Macro, Macro domain

 Score = 86.1 bits (214), Expect = 1e-23
 Identities = 31/69 (44%), Positives = 41/69 (59%), Gaps = 2/69 (2%)

Query: 7   GFKLPVSHVIHTVGPVFN--FHCNPEDILRSAYKNCLSVGKANNIQYIAFPAISCGVSQY 64
           G  LP  +VIH VGP++        E++L SAY+N L +     I+ IAFP IS G+  +
Sbjct: 49  GGNLPAKYVIHAVGPIWRHGGGEEEEELLASAYRNALELANELGIKSIAFPLISTGIYGF 108

Query: 65  PPDEAATIA 73
           P DEAA IA
Sbjct: 109 PKDEAAQIA 117

This domain is an ADP-ribose binding module. It is found in a number of otherwise unrelated proteins. It is found at the C-terminus of the macro-H2A histone protein. This domain is found in the non-structural proteins of several types of ssRNA viruses such as NSP3 from alphaviruses. This domain is also found on its own in a family of proteins from bacteria, archaebacteria, and eukaryotes. Length = 117

>gnl|CDD|235225 PRK04143, PRK04143, hypothetical protein; Provisional

 Score = 86.6 bits (215), Expect = 3e-22
 Identities = 33/78 (42%), Positives = 47/78 (60%), Gaps = 3/78 (3%)

Query: 6   RGFKLPVSHVIHTVGP-VFNFHCNP--EDILRSAYKNCLSVGKANNIQYIAFPAISCGVS 62
           R + LP  +VIHTVGP +     +P   D+L S Y++CL + +   ++ IAF  IS GV 
Sbjct: 155 RAYNLPAKYVIHTVGPIIRKQPVSPIRADLLASCYRSCLKLAEKAGLKSIAFCCISTGVF 214

Query: 63  QYPPDEAATIAISTVKEF 80
            +P +EAA IAI TV  +
Sbjct: 215 GFPKEEAAEIAIKTVLSW 232

Length = 264

>gnl|CDD|225021 COG2110, COG2110, Predicted phosphatase homologous to the C-terminal domain of histone macroH2A1 [General function prediction only]

 Score = 79.7 bits (197), Expect = 3e-20
 Identities = 31/79 (39%), Positives = 48/79 (60%), Gaps = 1/79 (1%)

Query: 6   RGFKLPVSHVIHTVGPVF-NFHCNPEDILRSAYKNCLSVGKANNIQYIAFPAISCGVSQY 64
              +LP  +VIHTVGP +     +  ++L +AY+  L + K   ++ +AFPAIS GV  +
Sbjct: 71  EAGRLPAKYVIHTVGPSWRGGSKDEAELLAAAYRAALRLAKEAGVRSVAFPAISTGVYGF 130

Query: 65  PPDEAATIAISTVKEFAND 83
           P +EAA IA+  VK+F  +
Sbjct: 131 PLEEAARIAVEAVKDFLPE 149

Length = 179

>gnl|CDD|239234 cd02906, Macro_1, Macro domain, Unknown family 1

 Score = 73.6 bits (181), Expect = 3e-18
 Identities = 32/84 (38%), Positives = 43/84 (51%), Gaps = 9/84 (10%)

Query: 1   MLKECRGFKLPVSHVIHTVGP------VFNFHCNPEDILRSAYKNCLSVGKANNIQYIAF 54
             K   G+ LP  +VIHTVGP          H    D+L   Y +CL + +   ++ IAF
Sbjct: 67  QAKITPGYNLPAKYVIHTVGPIIERGLTTPIHR---DLLAKCYLSCLDLAEKAGLKSIAF 123

Query: 55  PAISCGVSQYPPDEAATIAISTVK 78
             IS G+  +P +EAA IAI TV 
Sbjct: 124 CCISTGLFGFPQEEAAQIAIKTVL 147

The macro domain is a high-affinity ADP-ribose binding module found in a variety of proteins as a stand-alone domain or in combination with other domains like in histone macroH2A and some PARPs (poly ADP-ribose polymerases). Some macro domains recognize poly ADP-ribose as a ligand. Previously identified as displaying an Appr-1"-p (ADP-ribose-1"-monophosphate) processing activity, the macro domain may play roles in distinct ADP-ribose pathways, such as the ADP-ribosylation of proteins, an important post-translational modification which occurs in DNA repair, transcription, chromatin biology, and long-term memory formation, among other processes. This family is composed of uncharacterized proteins containing a macro domain, either as a stand-alone domain or in addition to a C-terminal SIR2 (silent information regulator 2) domain. Length = 147

>gnl|CDD|239235 cd02907, Macro_Af1521_BAL_like, Macro domain, Af1521- and BAL-like family

 Score = 71.9 bits (177), Expect = 2e-17
 Identities = 25/76 (32%), Positives = 37/76 (48%), Gaps = 2/76 (2%)

Query: 7   GFKLPVSHVIHTVGPVFNFHC--NPEDILRSAYKNCLSVGKANNIQYIAFPAISCGVSQY 64
             KLP  +VIH VGP ++        + L+ A  N L   +   ++ IA PAIS G+  +
Sbjct: 69  AGKLPCKYVIHAVGPRWSGGEAEECVEKLKKAILNSLRKAEELGLRSIAIPAISSGIFGF 128

Query: 65  PPDEAATIAISTVKEF 80
           P +      +  VKEF
Sbjct: 129 PLERCVETIVEAVKEF 144

The macro domain is a high-affinity ADP-ribose binding module found in a variety of proteins as a stand-alone domain or in combination with other domains like in histone macroH2A and some PARPs (poly ADP-ribose polymerases). Some macro domains recognize poly ADP-ribose as a ligand. Previously identified as an Appr-1"-p (ADP-ribose-1"-monophosphate) processing activity, the macro domain may play roles in distinct ADP-ribose pathways, such as the ADP-ribosylation of proteins, an important post-translational modification which occurs in DNA repair, transcription, chromatin biology, and long-term memory formation, among other processes. The macro domains in this family show similarity to Af1521, a protein from Archaeoglobus fulgidus containing a stand-alone macro domain. Af1521 binds ADP-ribose and exhibits phosphatase activity toward Appr-1"-p. Also included in this family are the N-terminal (or first) macro domains of BAL (B-aggressive lymphoma) proteins which contain multiple macro domains. Most BAL proteins also contain a C-terminal PARP active site and are also named as PARPs. Human BAL1 (or PARP-9) was originally identified as a risk-related gene in diffuse large B-cell lymphoma that promotes malignant B-cell migration. Some BAL family proteins exhibit PARP activity. Poly (ADP-ribosyl)ation is an immediate DNA-damage-dependent post-translational modification of histones and other nuclear proteins. BAL proteins may also function as transcription repressors. Length = 175

>gnl|CDD|239233 cd02905, Macro_GDAP2_like, Macro domain, GDAP2_like family

 Score = 70.9 bits (174), Expect = 3e-17
 Identities = 34/89 (38%), Positives = 46/89 (51%), Gaps = 10/89 (11%)

Query: 2   LKECR--------GFKLPVSHVIHTVGPVFN--FHCNPEDILRSAYKNCLSVGKANNIQY 51
           L  CR        G+ LP   +IHTVGP +N  +    E+ L S Y+N L + K   ++ 
Sbjct: 51  LGGCRTGEAKLTKGYNLPARFIIHTVGPKYNVKYRTAAENALYSCYRNVLQLAKELGLES 110

Query: 52  IAFPAISCGVSQYPPDEAATIAISTVKEF 80
           IA   IS     YPP+ AA IA+ TV+ F
Sbjct: 111 IALCVISSEKRNYPPEAAAHIALRTVRRF 139

The macro domain is a high-affinity ADP-ribose binding module found in a variety of proteins as a stand-alone domain or in combination with other domains like in histone macroH2A and some PARPs (poly ADP-ribose polymerases). Some macro domains recognize poly ADP-ribose as a ligand. Previously identified as displaying an Appr-1"-p (ADP-ribose-1"-monophosphate) processing activity, the macro domain may play roles in distinct ADP-ribose pathways, such as the ADP-ribosylation of proteins, an important post-translational modification which occurs in DNA repair, transcription, chromatin biology, and long-term memory formation, among other processes. This family contains proteins similar to human GDAP2, the ganglioside induced differentiation associated protein 2, whose gene is expressed at a higher level in differentiated Neuro2a cells compared with non-differentiated cells. GDAP2 contains an N-terminal macro domain and a C-terminal Sec14p-like lipid binding domain. It is specifically expressed in brain and testis. Length = 140

>gnl|CDD|214701 smart00506, A1pp, Appr-1"-p processing enzyme

 Score = 66.6 bits (163), Expect = 1e-15
 Identities = 24/68 (35%), Positives = 34/68 (50%), Gaps = 1/68 (1%)

Query: 7   GFKLPVSHVIHTVGPVFNFHCN-PEDILRSAYKNCLSVGKANNIQYIAFPAISCGVSQYP 65
           G  LP  +VIH VGP  + H     ++L +AY+NCL +     I  +A P I  G+   P
Sbjct: 66  GGNLPAKYVIHAVGPRASGHSKEGFELLENAYRNCLELAIELGITSVALPLIGTGIYGVP 125

Query: 66  PDEAATIA 73
            D +A   
Sbjct: 126 KDRSAQAL 133

Function determined by Martzen et al. Extended family detected by reciprocal PSI-BLAST searches (unpublished results, and Pehrson & Fuji). Length = 133

>gnl|CDD|239150 cd02749, Macro, Macro domain, a high-affinity ADP-ribose binding module found in a variety of proteins as a stand-alone domain or in combination with other domains like in histone macroH2A and some PARPs (poly ADP-ribose polymerases)

 Score = 55.4 bits (134), Expect = 3e-11
 Identities = 28/82 (34%), Positives = 43/82 (52%), Gaps = 9/82 (10%)

Query: 6   RGFKLPVSH-VIHTVGPVFNFHCNPE--DILRSAYKNCLSVGKANNIQYIAFPAISCGVS 62
           +G+ L  +  +IH VGP +N   N    ++L++AY+NCL   +   I+ IAFP I  G +
Sbjct: 66  KGYNLDGAKYLIHIVGPKYNQGNNKAAFELLKNAYENCLKEAEEKGIKSIAFPLIGTGPA 125

Query: 63  QYPPDE------AATIAISTVK 78
            +P DE      A  IA+    
Sbjct: 126 GFPKDEREPWEDAIKIALEAAI 147

Some macro domains recognize poly ADP-ribose as a ligand. Previously identified as displaying an Appr-1"-p (ADP-ribose-1"-monophosphate) processing activity, the macro domain may play roles in distinct ADP-ribose pathways, such as the ADP-ribosylation of proteins, an important post-translational modification which occurs in DNA repair, transcription, chromatin biology, and long-term memory formation, among other processes. Length = 147

>gnl|CDD|239231 cd02903, Macro_BAL_like, Macro domain, BAL_like family

 Score = 48.8 bits (117), Expect = 8e-09
 Identities = 24/75 (32%), Positives = 33/75 (44%), Gaps = 2/75 (2%)

Query: 6   RGFKLPVSHVIHTVGPVFNFHCNPEDILRSAYKNCLSVGKANNIQYIAFPAISCGVSQYP 65
           +G  LP  +V H V P  N+      IL+     CL   +  +   I+FPAI  G   +P
Sbjct: 65  KGGNLPCKYVYHVVLP--NWSNGALKILKDIVSECLEKCEELSYTSISFPAIGTGNLGFP 122

Query: 66  PDEAATIAISTVKEF 80
            D  A I    V +F
Sbjct: 123 KDVVAKIMFDEVFKF 137

The macro domain is a high-affinity ADP-ribose binding module found in a variety of proteins as a stand-alone domain or in combination with other domains like in histone macroH2A and some PARPs (poly ADP-ribose polymerases). Some macro domains recognize poly ADP-ribose as a ligand. Previously identified as displaying an Appr-1"-p (ADP-ribose-1"-monophosphate) processing activity, the macro domain may play roles in distinct ADP-ribose pathways, such as the ADP-ribosylation of proteins, an important post-translational modification which occurs in DNA repair, transcription, chromatin biology, and long-term memory formation, among other processes. Members of this family show similarity to BAL (B-aggressive lymphoma) proteins, which contain one to three macro domains. Most BAL family macro domains belong to this family except for the most N-terminal domain in multiple-domain containing proteins. Most BAL proteins also contain a C-terminal PARP active site and are also named as PARPs. Human BAL1 (or PARP-9) was originally identified as a risk-related gene in diffuse large B-cell lymphoma that promotes malignant B-cell migration. Some BAL family proteins exhibit PARP activity. Poly (ADP-ribosyl)ation is an immediate DNA-damage-dependent post-translational modification of histones and other nuclear proteins. BAL proteins may also function as transcription repressors. Length = 137

>gnl|CDD|239446 cd03330, Macro_2, Macro domain, Unknown family 2

 Score = 43.2 bits (102), Expect = 1e-06
 Identities = 19/75 (25%), Positives = 34/75 (45%), Gaps = 11/75 (14%)

Query: 9   KLPVSHVIHTV-----GPVFNFHCNPEDILRSAYKNCLSVGKANNIQYIAFPAISCGVSQ 63
            LP  +VIH       G         E+ +R A +  L++     I+ +AFPA+  GV  
Sbjct: 65  DLPARYVIHAATMEEPGRS------SEESVRKATRAALALADELGIESVAFPAMGTGVGG 118

Query: 64  YPPDEAATIAISTVK 78
            P ++ A + +  ++
Sbjct: 119 LPKEDVARLMVEVIE 133

The macro domain is a high-affinity ADP-ribose binding module found in a variety of proteins as a stand-alone domain or in combination with other domains like in histone macroH2A and some PARPs (poly ADP-ribose polymerases). Some macro domains recognize poly ADP-ribose as a ligand. Previously identified as displaying an Appr-1"-p (ADP-ribose-1"-monophosphate) processing activity, the macro domain may play roles in distinct ADP-ribose pathways, such as the ADP-ribosylation of proteins, an important post-translational modification which occurs in DNA repair, transcription, chromatin biology, and long-term memory formation, among other processes. This family is composed of uncharacterized proteins containing a stand-alone macro domain. Length = 133

>gnl|CDD|239232 cd02904, Macro_H2A_like, Macro domain, Macro_H2A_like family

 Score = 38.7 bits (90), Expect = 1e-04
 Identities = 20/73 (27%), Positives = 34/73 (46%), Gaps = 1/73 (1%)

Query: 5   CRGFKLPVSHVIHTVGPVFNFHCNPEDILRSAYKNCLSVGKANNIQYIAFPAISCGVSQY 64
            +   LP   VIH   P +      E+ L    KNCL+  +   ++ IAFP++  G + +
Sbjct: 85  SQAHGLPAKFVIHCHSPQWGSD-KCEEQLEKTVKNCLAAAEDKKLKSIAFPSLPSGRNGF 143

Query: 65  PPDEAATIAISTV 77
           P   AA + +  +
Sbjct: 144 PKQTAAQLILKAI 156

The macro domain is a high-affinity ADP-ribose binding module found in a variety of proteins as a stand-alone domain or in combination with other domains like in histone macroH2A and some PARPs (poly ADP-ribose polymerases). Some macro domains recognize poly ADP-ribose as a ligand. Previously identified as displaying an Appr-1"-p (ADP-ribose-1"-monophosphate) processing activity, the macro domain may play roles in distinct ADP-ribose pathways, such as the ADP-ribosylation of proteins, an important post-translational modification which occurs in DNA repair, transcription, chromatin biology, and long-term memory formation, among other processes. Members of this family are similar to macroH2A, a variant of the major-type core histone H2A, which contains an N-terminal H2A domain and a C-terminal nonhistone macro domain. Histone macroH2A is enriched on the inactive X chromosome of mammalian female cells. It does not bind poly ADP-ribose, but does bind the monomeric SirT1 metabolite O-acetyl-ADP-ribose (OAADPR) with high affinity through its macro domain. In addition, the macro domain of macroH2A associates with histone deacetylases and affects the acetylation status of nucleosomes. MacroH2A-containing nucleosomes are repressive toward transcription. Length = 186

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	96
cd02904	186	Macro_H2A_like Macro domain, Macro_H2A_like family	100.0
PRK04143	264	hypothetical protein; Provisional	100.0
cd02905	140	Macro_GDAP2_like Macro domain, GDAP2_like family.	100.0
cd02908	165	Macro_Appr_pase_like Macro domain, Appr-1"-pase_li	99.97
cd02907	175	Macro_Af1521_BAL_like Macro domain, Af1521- and BA	99.97
PRK00431	177	RNase III inhibitor; Provisional	99.97
cd02906	147	Macro_1 Macro domain, Unknown family 1. The macro	99.97
COG2110	179	Predicted phosphatase homologous to the C-terminal	99.96
cd02903	137	Macro_BAL_like Macro domain, BAL_like family. The	99.96
KOG2633	200	consensus Hismacro and SEC14 domain-containing pro	99.94
cd03330	133	Macro_2 Macro domain, Unknown family 2. The macro	99.92
PF01661	118	Macro: Macro domain; InterPro: IPR002589 The Macro	99.9
cd02900	186	Macro_Appr_pase Macro domain, Appr-1"-pase family.	99.88
PRK13341	725	recombination factor protein RarA/unknown domain f	99.85
smart00506	133	A1pp Appr-1"-p processing enzyme. Function determi	99.85
cd02749	147	Macro Macro domain, a high-affinity ADP-ribose bin	99.81
cd02901	140	Macro_Poa1p_like Macro domain, Poa1p_like family.	99.7
PHA02595	154	tk.4 hypothetical protein; Provisional	99.19
TIGR02452	266	conserved hypothetical protein TIGR02452. Members	98.32
PF14519	280	Macro_2: Macro-like domain; PDB: 1TXZ_A 1TY8_A 1NJ	98.12
COG4295	285	Uncharacterized protein conserved in bacteria [Fun	97.36
PF10154	510	DUF2362: Uncharacterized conserved protein (DUF236	95.94
cd03331	152	Macro_Poa1p_like_SNF2 Macro domain, Poa1p_like fam	95.79
PHA00684	128	hypothetical protein	83.25
PLN02214	342	cinnamoyl-CoA reductase	83.23
CHL00194	317	ycf39 Ycf39; Provisional	82.06
PRK06052	344	5-methyltetrahydropteroyltriglutamate--homocystein	81.62
PF01073	280	3Beta_HSD: 3-beta hydroxysteroid dehydrogenase/iso	81.03
PLN02657	390	3,8-divinyl protochlorophyllide a 8-vinyl reductas	80.89

>cd02904 Macro_H2A_like Macro domain, Macro_H2A_like family

Probab=100.00  E-value=2.3e-35  Score=203.06  Aligned_cols=94  Identities=23%  Similarity=0.450  Sum_probs=84.8

Q ss_pred             CceeccCCCCCCceEEEecCCCcCCCCCcHHHHHHHHHHHHHhHHhCCCcEEEecccccCCCCcChHHHHHHHHHHHHHH
Q 034374            1 MLKECRGFKLPVSHVIHTVGPVFNFHCNPEDILRSAYKNCLSVGKANNIQYIAFPAISCGVSQYPPDEAATIAISTVKEF   80 (96)
Q Consensus         1 ea~~T~ag~L~~k~IiH~v~P~~~~~~~~~~~L~~~~~~~L~~a~~~~~~SIAfPaigtG~~g~p~~~~a~~~~~~i~~~   80 (96)
                      |+++|+||+||||||||+|||.|+.+ +++++|++||++||++|++++++|||||+||||++|||++++|++|++++++|
T Consensus        81 ~~~iT~a~~Lp~k~VIHtVgP~~~~~-~~~~~L~~~~~~~L~~A~e~~~~SIAfPaIstG~~g~P~~~aA~i~~~~i~~~  159 (186)
T cd02904          81 GAAVSQAHGLPAKFVIHCHSPQWGSD-KCEEQLEKTVKNCLAAAEDKKLKSIAFPSLPSGRNGFPKQTAAQLILKAISSY  159 (186)
T ss_pred             CEEEccCCCCCCCEEEEeCCCCCCCC-chHHHHHHHHHHHHHHHHHcCCCEEEECCcccCCCCCCHHHHHHHHHHHHHHH
Confidence            68899999999999999999999654 45789999999999999999999999999999999999999999999999999


Q ss_pred             HhcC--CceEEEEEeee
Q 034374           81 ANDF--KEVSHDKFCLM   95 (96)
Q Consensus        81 ~~~~--~~v~~Vi~~~~   95 (96)
                      +++.  ++++.|+|++|
T Consensus       160 l~~~~~~~l~~I~fv~~  176 (186)
T cd02904         160 FVSTMSSSIKQIYFVLF  176 (186)
T ss_pred             HHhcCCCCccEEEEEEC
Confidence            9863  34666666665

The macro domain is a high-affinity ADP-ribose binding module found in a variety of proteins as a stand-alone domain or in combination with other domains like in histone macroH2A and some PARPs (poly ADP-ribose polymerases). Some macro domains recognize poly ADP-ribose as a ligand. Previously identified as displaying an Appr-1"-p (ADP-ribose-1"-monophosphate) processing activity, the macro domain may play roles in distinct ADP-ribose pathways, such as the ADP-ribosylation of proteins, an important post-translational modification which occurs in DNA repair, transcription, chromatin biology, and long-term memory formation, among other processes. Members of this family are similar to macroH2A, a variant of the major-type core histone H2A, which contains an N-terminal H2A domain and a C-terminal nonhistone macro domain. Histone macroH2A is enriched on the inactive X chromosome of mammalian female cells. It does not bind poly ADP-r

>PRK04143 hypothetical protein; Provisional

Probab=100.00  E-value=1.9e-33  Score=202.20  Aligned_cols=95  Identities=36%  Similarity=0.552  Sum_probs=87.9

Q ss_pred             CceeccCCCCCCceEEEecCCCcCCCC---CcHHHHHHHHHHHHHhHHhCCCcEEEecccccCCCCcChHHHHHHHHHHH
Q 034374            1 MLKECRGFKLPVSHVIHTVGPVFNFHC---NPEDILRSAYKNCLSVGKANNIQYIAFPAISCGVSQYPPDEAATIAISTV   77 (96)
Q Consensus         1 ea~~T~ag~L~~k~IiH~v~P~~~~~~---~~~~~L~~~~~~~L~~a~~~~~~SIAfPaigtG~~g~p~~~~a~~~~~~i   77 (96)
                      +|++|+||+||||||||+|||.|+.+.   ++.++|++||++||++|+++|++|||||+||||++|||++++|++|++++
T Consensus       150 ~a~iT~~~nLp~kyVIHtVgP~~~~g~~~~~~~~~L~~cy~s~L~~A~~~~~kSIAfP~IsTGi~gfP~~~aA~ia~~tv  229 (264)
T PRK04143        150 QAKITRAYNLPAKYVIHTVGPIIRKQPVSPIRADLLASCYRSCLKLAEKAGLKSIAFCCISTGVFGFPKEEAAEIAIKTV  229 (264)
T ss_pred             eEEEecCCCCCCCEEEEECCCcccCCCCCcchHHHHHHHHHHHHHHHHHcCCCEEEeccccCCCCCCCHHHHHHHHHHHH
Confidence            589999999999999999999998742   56789999999999999999999999999999999999999999999999


Q ss_pred             HHHHhcCCceEEEEEeee
Q 034374           78 KEFANDFKEVSHDKFCLM   95 (96)
Q Consensus        78 ~~~~~~~~~v~~Vi~~~~   95 (96)
                      ++|++..+....|+|++|
T Consensus       230 ~~fl~~~~~~~~Vif~vf  247 (264)
T PRK04143        230 LSWLKENPSKLKVVFNVF  247 (264)
T ss_pred             HHHHHhCCCCCEEEEEEc
Confidence            999998776567888887

>cd02905 Macro_GDAP2_like Macro domain, GDAP2_like family

Probab=100.00  E-value=2.3e-33  Score=185.76  Aligned_cols=81  Identities=40%  Similarity=0.665  Sum_probs=76.9

Q ss_pred             CceeccCCCCCCceEEEecCCCcCCCC--CcHHHHHHHHHHHHHhHHhCCCcEEEecccccCCCCcChHHHHHHHHHHHH
Q 034374            1 MLKECRGFKLPVSHVIHTVGPVFNFHC--NPEDILRSAYKNCLSVGKANNIQYIAFPAISCGVSQYPPDEAATIAISTVK   78 (96)
Q Consensus         1 ea~~T~ag~L~~k~IiH~v~P~~~~~~--~~~~~L~~~~~~~L~~a~~~~~~SIAfPaigtG~~g~p~~~~a~~~~~~i~   78 (96)
                      |+++|++|+|+||||||+|||.|+.+.  +.+++|++||+++|++|++++++|||||+||||++|||++++|++|+++++
T Consensus        58 ~~~~T~~~~L~~k~VIH~vgP~~~~~~~~~~~~~L~~~~~~~L~~a~~~~~~SIAfPai~tG~~gfP~~~aa~i~l~~v~  137 (140)
T cd02905          58 EAKLTKGYNLPARFIIHTVGPKYNVKYRTAAENALYSCYRNVLQLAKELGLESIALCVISSEKRNYPPEAAAHIALRTVR  137 (140)
T ss_pred             cEEEecCCCCCccEEEEecCCccCCCCCcHHHHHHHHHHHHHHHHHHHcCCCEEEECCcccCCCCCCHHHHHHHHHHHHH
Confidence            689999999999999999999999875  347899999999999999999999999999999999999999999999999


Q ss_pred             HHH
Q 034374           79 EFA   81 (96)
Q Consensus        79 ~~~   81 (96)
                      +|+
T Consensus       138 ~~l  140 (140)
T cd02905         138 RFL  140 (140)
T ss_pred             HhC
Confidence            995

The macro domain is a high-affinity ADP-ribose binding module found in a variety of proteins as a stand-alone domain or in combination with other domains like in histone macroH2A and some PARPs (poly ADP-ribose polymerases). Some macro domains recognize poly ADP-ribose as a ligand. Previously identified as displaying an Appr-1"-p (ADP-ribose-1"-monophosphate) processing activity, the macro domain may play roles in distinct ADP-ribose pathways, such as the ADP-ribosylation of proteins, an important post-translational modification which occurs in DNA repair, transcription, chromatin biology, and long-term memory formation, among other processes. This family contains proteins similar to human GDAP2, the ganglioside induced differentiation associated protein 2, whose gene is expressed at a higher level in differentiated Neuro2a cells compared with non-differentiated cells. GDAP2 contains an N-terminal macro domain and a C-terminal

>cd02908 Macro_Appr_pase_like Macro domain, Appr-1"-pase_like family

Probab=99.97  E-value=3e-31  Score=179.12  Aligned_cols=94  Identities=43%  Similarity=0.669  Sum_probs=84.5

Q ss_pred             CceeccCCCCCCceEEEecCCCcCCCC-CcHHHHHHHHHHHHHhHHhCCCcEEEecccccCCCCcChHHHHHHHHHHHHH
Q 034374            1 MLKECRGFKLPVSHVIHTVGPVFNFHC-NPEDILRSAYKNCLSVGKANNIQYIAFPAISCGVSQYPPDEAATIAISTVKE   79 (96)
Q Consensus         1 ea~~T~ag~L~~k~IiH~v~P~~~~~~-~~~~~L~~~~~~~L~~a~~~~~~SIAfPaigtG~~g~p~~~~a~~~~~~i~~   79 (96)
                      ++++|++|+|+|+||||++||.|+.+. ++.+.|+++|+++|+.|++++++|||||+||||++|||++++|++|++++++
T Consensus        57 ~~v~T~~~~l~~~~IiH~v~P~~~~~~~~~~~~L~~~~~~~L~~a~~~~~~sIa~P~igtG~~g~p~~~~a~~~~~ai~~  136 (165)
T cd02908          57 EAVITSGYNLPAKYVIHTVGPVWRGGQHNEAELLASCYRNSLELARENGLRSIAFPAISTGVYGYPLDEAARIALKTVRE  136 (165)
T ss_pred             CEEEeeCCCCCCCEEEEEcCCcccCCCCcHHHHHHHHHHHHHHHHHHcCCCEEEECceecCCCCCCHHHHHHHHHHHHHH
Confidence            589999999999999999999998763 6788999999999999999999999999999999999999999999999999


Q ss_pred             HHhcCCceEEEEEee
Q 034374           80 FANDFKEVSHDKFCL   94 (96)
Q Consensus        80 ~~~~~~~v~~Vi~~~   94 (96)
                      |+++.+.+..|.|++
T Consensus       137 fl~~~~~l~~V~~v~  151 (165)
T cd02908         137 FLEEHDAIERVIFVC  151 (165)
T ss_pred             HHhcCCCCCEEEEEe
Confidence            998644444444444

The macro domain is a high-affinity ADP-ribose binding module found in a variety of proteins as a stand-alone domain or in combination with other domains like in histone macroH2A and some PARPs (poly ADP-ribose polymerases). Some macro domains recognize poly ADP-ribose as a ligand. Previously identified as displaying an Appr-1"-p (ADP-ribose-1"-monophosphate) processing activity, the macro domain may play roles in distinct ADP-ribose pathways, such as the ADP-ribosylation of proteins, an important post-translational modification which occurs in DNA repair, transcription, chromatin biology, and long-term memory formation, among other processes. This family is composed of uncharacterized proteins that show similarity to Appr-1"-pase, containing conserved putative active site residues. Appr-1"-pase is a phosphatase specific for ADP-ribose-1"-monophosphate.

>cd02907 Macro_Af1521_BAL_like Macro domain, Af1521- and BAL-like family

Probab=99.97  E-value=9.2e-31  Score=178.06  Aligned_cols=95  Identities=26%  Similarity=0.326  Sum_probs=84.6

Q ss_pred             CceeccCCCCCCceEEEecCCCcCCCC--CcHHHHHHHHHHHHHhHHhCCCcEEEecccccCCCCcChHHHHHHHHHHHH
Q 034374            1 MLKECRGFKLPVSHVIHTVGPVFNFHC--NPEDILRSAYKNCLSVGKANNIQYIAFPAISCGVSQYPPDEAATIAISTVK   78 (96)
Q Consensus         1 ea~~T~ag~L~~k~IiH~v~P~~~~~~--~~~~~L~~~~~~~L~~a~~~~~~SIAfPaigtG~~g~p~~~~a~~~~~~i~   78 (96)
                      ++++|++|+|+||||||+|+|.|+.++  ++.+.|+++|++||++|.+++++|||||+||||.+|||++++|++|+++++
T Consensus        63 ~~~~T~~~~L~~k~IiH~v~P~~~~~~~~~~~~~L~~~~~~~L~~a~~~~~~SIA~P~lgtG~~g~p~~~~a~~~~~~i~  142 (175)
T cd02907          63 EVVVTSAGKLPCKYVIHAVGPRWSGGEAEECVEKLKKAILNSLRKAEELGLRSIAIPAISSGIFGFPLERCVETIVEAVK  142 (175)
T ss_pred             cEEEecCCCCCCCEEEEeCCCcCCCCCCchHHHHHHHHHHHHHHHHHHcCCCEEEECCcccCCCCCCHHHHHHHHHHHHH
Confidence            578999999999999999999998874  567899999999999999999999999999999999999999999999999


Q ss_pred             HHHhcC-CceEEEEEeee
Q 034374           79 EFANDF-KEVSHDKFCLM   95 (96)
Q Consensus        79 ~~~~~~-~~v~~Vi~~~~   95 (96)
                      +|+++. ..++.|.|++|
T Consensus       143 ~fl~~~~~~l~~I~~v~~  160 (175)
T cd02907         143 EFLETKGSALKEIYLVDY  160 (175)
T ss_pred             HHHHhcCCCccEEEEEEC
Confidence            999864 23444444443

The macro domain is a high-affinity ADP-ribose binding module found in a variety of proteins as a stand-alone domain or in combination with other domains like in histone macroH2A and some PARPs (poly ADP-ribose polymerases). Some macro domains recognize poly ADP-ribose as a ligand. Previously identified as an Appr-1"-p (ADP-ribose-1"-monophosphate) processing activity, the macro domain may play roles in distinct ADP-ribose pathways, such as the ADP-ribosylation of proteins, an important post-translational modification which occurs in DNA repair, transcription, chromatin biology, and long-term memory formation, among other processes. The macro domains in this family show similarity to Af1521, a protein from Archaeoglobus fulgidus containing a stand-alone macro domain. Af1521 binds ADP-ribose and exhibits phosphatase activity toward Appr-1"-p. Also included in this family are the N-terminal (or first) macro domains

>PRK00431 RNase III inhibitor; Provisional

Probab=99.97  E-value=4.5e-30  Score=174.83  Aligned_cols=95  Identities=40%  Similarity=0.550  Sum_probs=85.3

Q ss_pred             CceeccCCCCCCceEEEecCCCcCCCC-CcHHHHHHHHHHHHHhHHhCCCcEEEecccccCCCCcChHHHHHHHHHHHHH
Q 034374            1 MLKECRGFKLPVSHVIHTVGPVFNFHC-NPEDILRSAYKNCLSVGKANNIQYIAFPAISCGVSQYPPDEAATIAISTVKE   79 (96)
Q Consensus         1 ea~~T~ag~L~~k~IiH~v~P~~~~~~-~~~~~L~~~~~~~L~~a~~~~~~SIAfPaigtG~~g~p~~~~a~~~~~~i~~   79 (96)
                      ++++|++|+|+||||||+|||.|+.+. .+.+.|+++|+++|+.|++++++|||||+||||++|+|++++|++|++++++
T Consensus        64 ~~~~T~~~~l~~~~IiH~v~P~~~~~~~~~~~~L~~~~~~~L~~a~~~~~~sIa~P~lgtG~~g~p~~~~A~~~~~~i~~  143 (177)
T PRK00431         64 EAVITSAGRLPAKYVIHTVGPVWRGGEDNEAELLASAYRNSLRLAAELGLRSIAFPAISTGVYGYPLEDAARIAVKTVRE  143 (177)
T ss_pred             eEEEecCCCCCCCEEEEecCCeecCCCCcHHHHHHHHHHHHHHHHHHcCCceEEECccccCccCCCHHHHHHHHHHHHHH
Confidence            578999999999999999999998765 4678999999999999999999999999999999999999999999999999


Q ss_pred             HHhcCCceEEEEEeee
Q 034374           80 FANDFKEVSHDKFCLM   95 (96)
Q Consensus        80 ~~~~~~~v~~Vi~~~~   95 (96)
                      |+++.+.++.|.||+|
T Consensus       144 f~~~~~~l~~I~~v~~  159 (177)
T PRK00431        144 FLTRHKSPEEVYFVCY  159 (177)
T ss_pred             HHhcCCCcCEEEEEEC
Confidence            9876655555555543

>cd02906 Macro_1 Macro domain, Unknown family 1

Probab=99.97  E-value=4.1e-30  Score=171.28  Aligned_cols=78  Identities=40%  Similarity=0.627  Sum_probs=73.6

Q ss_pred             CceeccCCCCCCceEEEecCCCcCCCC---CcHHHHHHHHHHHHHhHHhCCCcEEEecccccCCCCcChHHHHHHHHHHH
Q 034374            1 MLKECRGFKLPVSHVIHTVGPVFNFHC---NPEDILRSAYKNCLSVGKANNIQYIAFPAISCGVSQYPPDEAATIAISTV   77 (96)
Q Consensus         1 ea~~T~ag~L~~k~IiH~v~P~~~~~~---~~~~~L~~~~~~~L~~a~~~~~~SIAfPaigtG~~g~p~~~~a~~~~~~i   77 (96)
                      ||++|++|+|+||||||+|||.|+.+.   ++.+.|++||+++|+.|++++++|||||+||||++|||++++|+++++++
T Consensus        67 ~a~~T~~~~L~~k~VIHavgP~~~~~~~~~~~~~~L~~~~~~~L~~a~~~~~~sIA~P~i~tG~~g~p~~~aA~i~~~~v  146 (147)
T cd02906          67 QAKITPGYNLPAKYVIHTVGPIIERGLTTPIHRDLLAKCYLSCLDLAEKAGLKSIAFCCISTGLFGFPQEEAAQIAIKTV  146 (147)
T ss_pred             eEEEEeCCCCCCCEEEEECCCcccCCCCCccHHHHHHHHHHHHHHHHHHcCCCEEEECcccccCCCCCHHHHHHHHHHHh
Confidence            589999999999999999999998764   46789999999999999999999999999999999999999999999987


Q ss_pred             H
Q 034374           78 K   78 (96)
Q Consensus        78 ~   78 (96)
                      +
T Consensus       147 ~  147 (147)
T cd02906         147 L  147 (147)
T ss_pred             C
Confidence            4

The macro domain is a high-affinity ADP-ribose binding module found in a variety of proteins as a stand-alone domain or in combination with other domains like in histone macroH2A and some PARPs (poly ADP-ribose polymerases). Some macro domains recognize poly ADP-ribose as a ligand. Previously identified as displaying an Appr-1"-p (ADP-ribose-1"-monophosphate) processing activity, the macro domain may play roles in distinct ADP-ribose pathways, such as the ADP-ribosylation of proteins, an important post-translational modification which occurs in DNA repair, transcription, chromatin biology, and long-term memory formation, among other processes. This family is composed of uncharacterized proteins containing a macro domain, either as a stand-alone domain or in addition to a C-terminal SIR2 (silent information regulator 2) domain.

>COG2110 Predicted phosphatase homologous to the C-terminal domain of histone macroH2A1 [General function prediction only]

Probab=99.96  E-value=2.4e-29  Score=172.18  Aligned_cols=94  Identities=34%  Similarity=0.557  Sum_probs=88.1

Q ss_pred             CceeccCCCCCCceEEEecCCCcCCCC-CcHHHHHHHHHHHHHhHHhCCCcEEEecccccCCCCcChHHHHHHHHHHHHH
Q 034374            1 MLKECRGFKLPVSHVIHTVGPVFNFHC-NPEDILRSAYKNCLSVGKANNIQYIAFPAISCGVSQYPPDEAATIAISTVKE   79 (96)
Q Consensus         1 ea~~T~ag~L~~k~IiH~v~P~~~~~~-~~~~~L~~~~~~~L~~a~~~~~~SIAfPaigtG~~g~p~~~~a~~~~~~i~~   79 (96)
                      ||++|++|+|++|||||++||.|.++. .+.+.|+++|+++|++|+++|++|||||+||||++|+|++++++++++++++
T Consensus        66 ~Avit~~~~l~a~~ViH~vgp~~~~g~~~~~e~l~~a~~~~l~~a~~~g~~SiAfPaistGv~G~p~~~aa~i~~~~v~~  145 (179)
T COG2110          66 EAVITEAGRLPAKYVIHTVGPSWRGGSKDEAELLAAAYRAALRLAKEAGVRSVAFPAISTGVYGFPLEEAARIAVEAVKD  145 (179)
T ss_pred             EEEEccCcCCCCCEEEecCCCcccCCChhHHHHHHHHHHHHHHHHHHcCCceeecccccCcccCCCHHHHHHHHHHHHHH
Confidence            689999999999999999999998876 5678999999999999999999999999999999999999999999999999


Q ss_pred             HHhcCCceEEEEEeee
Q 034374           80 FANDFKEVSHDKFCLM   95 (96)
Q Consensus        80 ~~~~~~~v~~Vi~~~~   95 (96)
                      |+.. ..++.|+|++|
T Consensus       146 ~~~~-~~~~~v~~v~~  160 (179)
T COG2110         146 FLPE-ASIETVIFVVY  160 (179)
T ss_pred             hccc-ccccEEEEEec
Confidence            9987 67778888776

>cd02903 Macro_BAL_like Macro domain, BAL_like family

Probab=99.96  E-value=2.1e-29  Score=165.84  Aligned_cols=78  Identities=29%  Similarity=0.420  Sum_probs=74.5

Q ss_pred             CceeccCCCCCCceEEEecCCCcCCCCCcHHHHHHHHHHHHHhHHhCCCcEEEecccccCCCCcChHHHHHHHHHHHHHH
Q 034374            1 MLKECRGFKLPVSHVIHTVGPVFNFHCNPEDILRSAYKNCLSVGKANNIQYIAFPAISCGVSQYPPDEAATIAISTVKEF   80 (96)
Q Consensus         1 ea~~T~ag~L~~k~IiH~v~P~~~~~~~~~~~L~~~~~~~L~~a~~~~~~SIAfPaigtG~~g~p~~~~a~~~~~~i~~~   80 (96)
                      |+++|++|+|+||||||+++|.|..+  +.+.|+++|++||+.|++++++|||||+||||.+|||++++|++|++++++|
T Consensus        60 ~~~vT~~~~L~~k~IiH~~~p~~~~~--~~~~l~~~~~~~L~~a~~~~~~SIAfP~igtG~~g~p~~~~A~~~~~~i~~f  137 (137)
T cd02903          60 SVIVTKGGNLPCKYVYHVVLPNWSNG--ALKILKDIVSECLEKCEELSYTSISFPAIGTGNLGFPKDVVAKIMFDEVFKF  137 (137)
T ss_pred             eEEEecCCCCCCCEEEEecCCCCCCc--hHHHHHHHHHHHHHHHHHCCCcEEEECCCcCcCCCCCHHHHHHHHHHHHHhC
Confidence            57899999999999999999999865  6789999999999999999999999999999999999999999999999987

The macro domain is a high-affinity ADP-ribose binding module found in a variety of proteins as a stand-alone domain or in combination with other domains like in histone macroH2A and some PARPs (poly ADP-ribose polymerases). Some macro domains recognize poly ADP-ribose as a ligand. Previously identified as displaying an Appr-1"-p (ADP-ribose-1"-monophosphate) processing activity, the macro domain may play roles in distinct ADP-ribose pathways, such as the ADP-ribosylation of proteins, an important post-translational modification which occurs in DNA repair, transcription, chromatin biology, and long-term memory formation, among other processes. Members of this family show similarity to BAL (B-aggressive lymphoma) proteins, which contain one to three macro domains. Most BAL family macro domains belong to this family except for the most N-terminal domain in multiple-domain containing proteins. Most BAL proteins also contain a C-termin

>KOG2633 consensus Hismacro and SEC14 domain-containing proteins [Chromatin structure and dynamics; Transcription]

Probab=99.94  E-value=3.1e-26  Score=158.41  Aligned_cols=94  Identities=35%  Similarity=0.528  Sum_probs=83.6

Q ss_pred             CceeccCCCCCCceEEEecCCCcCCCC-CcHHHHHHHHHHHHHhHHhCCCcEEEecccccCCCCcChHHHHHHHHHHHHH
Q 034374            1 MLKECRGFKLPVSHVIHTVGPVFNFHC-NPEDILRSAYKNCLSVGKANNIQYIAFPAISCGVSQYPPDEAATIAISTVKE   79 (96)
Q Consensus         1 ea~~T~ag~L~~k~IiH~v~P~~~~~~-~~~~~L~~~~~~~L~~a~~~~~~SIAfPaigtG~~g~p~~~~a~~~~~~i~~   79 (96)
                      ||++|++++||||+|||+|||.|.... ++...|++||+|+|.+|.+++++|||||+|++|.+|||.+++|++.+++++.
T Consensus        84 ~ak~t~~~~Lpak~vIHtvgP~~~~d~~~~~~~L~~~~rs~L~la~~~~ls~iAf~~I~sg~~gyP~e~aa~~~l~ti~~  163 (200)
T KOG2633|consen   84 AAKSTGGYGLPAKRVIHTVGPRWKEDKLQECYFLHSCYRSCLDLAIEKLLSSIAFPKISSGRVGYPWEDAAKIELETIRV  163 (200)
T ss_pred             eeEecCCCCCceeEEEEecCchhhccchHHHHHHHHHHHHHHHHHHHhccceeeeeeeeccccCccHHHHHHHHHHHHHH
Confidence            688999999999999999999999876 3333699999999999999999999999999999999999999999999999


Q ss_pred             HHhcCCceEEEEEeee
Q 034374           80 FANDFKEVSHDKFCLM   95 (96)
Q Consensus        80 ~~~~~~~v~~Vi~~~~   95 (96)
                      |++.+++.. +.++.|
T Consensus       164 ~f~~~~d~~-l~~~~f  178 (200)
T KOG2633|consen  164 FFVKNKDSS-LKTVPF  178 (200)
T ss_pred             HHhhCCCce-EEEEEE
Confidence            999876544 444443

>cd03330 Macro_2 Macro domain, Unknown family 2

Probab=99.92  E-value=1.4e-24  Score=141.71  Aligned_cols=76  Identities=24%  Similarity=0.330  Sum_probs=70.5

Q ss_pred             CceeccCCCCCCceEEEecCCCcCCCCCcHHHHHHHHHHHHHhHHhCCCcEEEecccccCCCCcChHHHHHHHHHHH
Q 034374            1 MLKECRGFKLPVSHVIHTVGPVFNFHCNPEDILRSAYKNCLSVGKANNIQYIAFPAISCGVSQYPPDEAATIAISTV   77 (96)
Q Consensus         1 ea~~T~ag~L~~k~IiH~v~P~~~~~~~~~~~L~~~~~~~L~~a~~~~~~SIAfPaigtG~~g~p~~~~a~~~~~~i   77 (96)
                      ++++|++|+|+||||||+++|.+.. ..+.+.|++||+++|+.|++++++|||||+||||.+|+|+++++++|.+++
T Consensus        57 ~~~~t~~~~l~~k~Iih~~~~~~~~-~~~~~~l~~~~~~~l~~a~~~~~~sIA~P~igtG~~g~~~~~~a~i~~~~i  132 (133)
T cd03330          57 EAVITGAGDLPARYVIHAATMEEPG-RSSEESVRKATRAALALADELGIESVAFPAMGTGVGGLPKEDVARLMVEVI  132 (133)
T ss_pred             eEEEEeCCCCCCCEEEEeCCCCCCC-CCHHHHHHHHHHHHHHHHHHcCCCEEEECcccccCCCCCHHHHHHHHHHHh
Confidence            4689999999999999999997655 456779999999999999999999999999999999999999999999886

The macro domain is a high-affinity ADP-ribose binding module found in a variety of proteins as a stand-alone domain or in combination with other domains like in histone macroH2A and some PARPs (poly ADP-ribose polymerases). Some macro domains recognize poly ADP-ribose as a ligand. Previously identified as displaying an Appr-1"-p (ADP-ribose-1"-monophosphate) processing activity, the macro domain may play roles in distinct ADP-ribose pathways, such as the ADP-ribosylation of proteins, an important post-translational modification which occurs in DNA repair, transcription, chromatin biology, and long-term memory formation, among other processes. This family is composed of uncharacterized proteins containing a stand-alone macro domain.

>PF01661 Macro: Macro domain; InterPro: IPR002589 The Macro or A1pp domain is a module of about 180 amino acids which can bind ADP-ribose, an NAD metabolite or related ligands

Probab=99.90  E-value=5.4e-24  Score=134.78  Aligned_cols=73  Identities=41%  Similarity=0.629  Sum_probs=68.5

Q ss_pred             CceeccCCCCCCceEEEecCCCcCCCC--CcHHHHHHHHHHHHHhHHhCCCcEEEecccccCCCCcChHHHHHHH
Q 034374            1 MLKECRGFKLPVSHVIHTVGPVFNFHC--NPEDILRSAYKNCLSVGKANNIQYIAFPAISCGVSQYPPDEAATIA   73 (96)
Q Consensus         1 ea~~T~ag~L~~k~IiH~v~P~~~~~~--~~~~~L~~~~~~~L~~a~~~~~~SIAfPaigtG~~g~p~~~~a~~~   73 (96)
                      ++++|++++|+++||||+++|.|....  ++.+.|+++|+++|+.|++++++||+||+||||.+|+|+++++++|
T Consensus        44 ~~~~t~~~~l~~~~Iih~v~P~~~~~~~~~~~~~L~~~~~~~l~~a~~~~~~sIa~P~ig~G~~g~~~~~~a~i~  118 (118)
T PF01661_consen   44 EVIVTPGGNLPCKYIIHAVGPTYNSPGEKNSYEALESAYRNALQKAEENGIKSIAFPAIGTGIGGFPWDEVAEIM  118 (118)
T ss_dssp             SEEEEEETTSSSSEEEEEEEEETTTSTSTTHHHHHHHHHHHHHHHHHHTTTSEEEEESTTSSTTSBTHHHHHHHH
T ss_pred             CeeeecCCCccccceEEEecceeccccccccHHHHHHHHHHHHHHHHHcCCcccccCcccCCCCCCCHHHHHhhC
Confidence            578999999999999999999997443  6789999999999999999999999999999999999999999986

Binding to ADP-ribose could be either covalent or non-covalent []: in certain cases it is believed to bind non-covalently []; while in other cases (such as Aprataxin) it appears to bind both non-covalently through a zinc finger motif, and covalently through a separate region of the protein []. The domain was described originally in association with ADP-ribose 1''-phosphate (Appr-1''-P) processing activity (A1pp) of the yeast YBR022W protein []. The domain is also called Macro domain as it is the C-terminal domain of mammalian core histone macro-H2A [, ]. Macro domain proteins can be found in eukaryotes, in (mostly pathogenic) bacteria, in archaea and in ssRNA viruses, such as coronaviruses, Rubella and Hepatitis E viruses. In vertebrates the domain occurs e.g. in histone macroH2A, in predicted poly-ADP-ribose polymerases (PARPs) and in B aggressive lymphoma (BAL) protein. The macro domain can be associated with catalytic domains, such as PARP, or sirtuin. The Macro domain can recognise ADP-ribose or in some cases poly-ADP-ribose, which can be involved in ADP-ribosylation reactions that occur in important processes, such as chromatin biology, DNA repair and transcription regulation []. The human macroH2A1.1 Macro domain binds an NAD metabolite O-acetyl-ADP-ribose []. The Macro domain has been suggested to play a regulatory role in ADP-ribosylation, which is involved in inter- and intracellular signaling, transcriptional regulation, DNA repair pathways and maintenance of genomic stability, telomere dynamics, cell differentiation and proliferation, and necrosis and apoptosis. The 3D structure of the Macro domain has a mixed alpha/beta fold of a mixed beta sheet sandwiched between four helices. Several Macro domain only domains are shorter than the structure of AF1521 and lack either the first strand or the C-terminal helix 5. Well conserved residues form a hydrophobic cleft and cluster around the AF1521-ADP-ribose binding site [, , , ]. ; PDB: 2DX6_A 2XD7_D 3Q71_A 2FAV_B 1SPV_A 3EKE_A 3EJF_A 1YD9_B 3GPG_B 3GPQ_A ....

>cd02900 Macro_Appr_pase Macro domain, Appr-1"-pase family

Probab=99.88  E-value=3.7e-22  Score=137.60  Aligned_cols=81  Identities=16%  Similarity=0.133  Sum_probs=72.7

Q ss_pred             CceeccCCCCC----------CceEEEecCCCcC-CCCCcHHHHHHHHHHHHHhHHhC--CCcEEEecccccCCCCcChH
Q 034374            1 MLKECRGFKLP----------VSHVIHTVGPVFN-FHCNPEDILRSAYKNCLSVGKAN--NIQYIAFPAISCGVSQYPPD   67 (96)
Q Consensus         1 ea~~T~ag~L~----------~k~IiH~v~P~~~-~~~~~~~~L~~~~~~~L~~a~~~--~~~SIAfPaigtG~~g~p~~   67 (96)
                      +|++|++|+|+          +|||||++++.+. ....+.+.+++||+++|+.++++  +++|||||+||||.+|+|++
T Consensus        93 ~a~it~~~~l~~~~~~~~~~~~~~iIHaPtm~~P~~~~~~~~~l~~a~~~~L~~a~~~~~~i~sIa~P~igTGvgg~p~~  172 (186)
T cd02900          93 SATVVPLGRALLEKTIYCRWGIPYLIHAPTMRVPSPVITGTEPVFDAMWNALNAIPKENQEINTLVLPGLGTGYGGVPPE  172 (186)
T ss_pred             cEEEecCCCCccccccccccCCCEEEEcCcccCCCCCCCcHHHHHHHHHHHHHHHHhccCCCCEEEECchhcCCCCCCHH
Confidence            68999999999          9999999886554 22245679999999999999987  89999999999999999999


Q ss_pred             HHHHHHHHHHHHHH
Q 034374           68 EAATIAISTVKEFA   81 (96)
Q Consensus        68 ~~a~~~~~~i~~~~   81 (96)
                      ++|++|++++++|.
T Consensus       173 ~aA~~m~~ai~~f~  186 (186)
T cd02900         173 IAAKQMAFAIRLFN  186 (186)
T ss_pred             HHHHHHHHHHHHhC
Confidence            99999999999884

The macro domain is a high-affinity ADP-ribose binding module found in a variety of proteins as a stand-alone domain or in combination with other domains like in histone macroH2A and some PARPs (poly ADP-ribose polymerases). Some macro domains recognize poly ADP-ribose as a ligand. The yeast protein Ymx7 and related proteins in this family contain a stand-alone macro domain and may be specific phosphatases catalyzing the conversion of ADP-ribose-1"-monophosphate (Appr-1"-p) to ADP-ribose. Appr-1"-p is an intermediate in a metabolic pathway involved in pre-tRNA splicing.

>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed

Probab=99.85  E-value=2.9e-23  Score=165.68  Aligned_cols=89  Identities=19%  Similarity=0.267  Sum_probs=80.6

Q ss_pred             cCCCCCCceEEEecCCCcCCCCCcHHHHHHHHHHHHHhHHhCCCc----------EEEecccccCCCCcChHHHHHHHHH
Q 034374            6 RGFKLPVSHVIHTVGPVFNFHCNPEDILRSAYKNCLSVGKANNIQ----------YIAFPAISCGVSQYPPDEAATIAIS   75 (96)
Q Consensus         6 ~ag~L~~k~IiH~v~P~~~~~~~~~~~L~~~~~~~L~~a~~~~~~----------SIAfPaigtG~~g~p~~~~a~~~~~   75 (96)
                      ++|+|+|+||||+|||.|.++.. .+.|.+||.++|++|++++++          |||||+||||++|||.+++++++.+
T Consensus       592 ~~g~L~~~~vIh~vGp~~~~~~~-~~~l~~~~~~~L~~Aee~~~~~~~~~~~~~~sia~p~istgv~~~p~~~a~~i~~~  670 (725)
T PRK13341        592 PAGKLKLLYSIPAVGPAWALLSE-DELLYKALYSALLEAEELWLKLQWDQSLLQQSLEMPGWSTGIEQWPEELALGIDSK  670 (725)
T ss_pred             CCCeeEEEEeccccChHhhhcCc-cchhHHHHHHHHHHHHHHhcccccchhHHHHHHHhcCCccceecCCcccccccCHH
Confidence            99999999999999999987654 569999999999999999999          9999999999999999999999999


Q ss_pred             HHHHHHhcCCceEEEEEeee
Q 034374           76 TVKEFANDFKEVSHDKFCLM   95 (96)
Q Consensus        76 ~i~~~~~~~~~v~~Vi~~~~   95 (96)
                      ++.+|+++.++..-++|++|
T Consensus       671 ~i~~~~~~~~~~~~~i~~~~  690 (725)
T PRK13341        671 LIKRWLAQGPDYRQALATNL  690 (725)
T ss_pred             HHHHHHhcCCcHHHHHhccC
Confidence            99999988776544555544

>smart00506 A1pp Appr-1"-p processing enzyme

Probab=99.85  E-value=5.8e-21  Score=123.30  Aligned_cols=73  Identities=33%  Similarity=0.493  Sum_probs=68.1

Q ss_pred             CceeccCCCCCCceEEEecCCCcCCC-CCcHHHHHHHHHHHHHhHHhCCCcEEEecccccCCCCcChHHHHHHH
Q 034374            1 MLKECRGFKLPVSHVIHTVGPVFNFH-CNPEDILRSAYKNCLSVGKANNIQYIAFPAISCGVSQYPPDEAATIA   73 (96)
Q Consensus         1 ea~~T~ag~L~~k~IiH~v~P~~~~~-~~~~~~L~~~~~~~L~~a~~~~~~SIAfPaigtG~~g~p~~~~a~~~   73 (96)
                      ++++|+++++++++|||+++|.|..+ ..+.+.|+++|+++|+.|.+++++|||||+||||.+|+|++++++++
T Consensus        60 ~~~~~~~~~~~~~~Iih~~~p~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~sIa~P~igtG~~g~~~~~~~~~~  133 (133)
T smart00506       60 TAVVTEGGNLPAKYVIHAVGPRASGHSNEGFELLENAYRNCLELAIELGITSVAIPLIGTGIYGVPKDRSAQAL  133 (133)
T ss_pred             cEEEecCCCCCCCEEEEeCCCCCCCCCccHHHHHHHHHHHHHHHHHHcCCCEEEECCccCCCCCCCHHHHHhhC
Confidence            46889999999999999999999987 36788999999999999999999999999999999999999999864

Function determined by Martzen et al. Extended family detected by reciprocal PSI-BLAST searches (unpublished results, and Pehrson & Fuji).

>cd02749 Macro Macro domain, a high-affinity ADP-ribose binding module found in a variety of proteins as a stand-alone domain or in combination with other domains like in histone macroH2A and some PARPs (poly ADP-ribose polymerases)

Probab=99.81  E-value=1.5e-19  Score=118.64  Aligned_cols=77  Identities=32%  Similarity=0.592  Sum_probs=71.7

Q ss_pred             CceeccCCCCC-CceEEEecCCCcCCCC--CcHHHHHHHHHHHHHhHHhCCCcEEEecccccCCCCc------ChHHHHH
Q 034374            1 MLKECRGFKLP-VSHVIHTVGPVFNFHC--NPEDILRSAYKNCLSVGKANNIQYIAFPAISCGVSQY------PPDEAAT   71 (96)
Q Consensus         1 ea~~T~ag~L~-~k~IiH~v~P~~~~~~--~~~~~L~~~~~~~L~~a~~~~~~SIAfPaigtG~~g~------p~~~~a~   71 (96)
                      ++.+|++++++ ++||||+++|.|....  .+.+.|+++|+++|+.+.+++++|||||.||||.+|+      |.+.+++
T Consensus        61 ~~~~t~~~~~~~~~~vih~~~p~~~~~~~~~~~~~l~~a~~~~L~~~~~~~~~sIa~P~igtG~~g~~~~~~~~~~~~~~  140 (147)
T cd02749          61 EAVLTKGYNLDGAKYLIHIVGPKYNQGNNKAAFELLKNAYENCLKEAEEKGIKSIAFPLIGTGPAGFPKDEREPWEDAIK  140 (147)
T ss_pred             CEEECcCCCCCcCCEEEEeCCCCCCCCCCchHHHHHHHHHHHHHHHHHHcCCCEEEECCcccccCCCCccccCCHHHHHH
Confidence            57899999999 9999999999998864  4678999999999999999999999999999999999      9999999


Q ss_pred             HHHHHH
Q 034374           72 IAISTV   77 (96)
Q Consensus        72 ~~~~~i   77 (96)
                      ++++++
T Consensus       141 i~~~~~  146 (147)
T cd02749         141 IALEAA  146 (147)
T ss_pred             HHHHHh
Confidence            998875

Some macro domains recognize poly ADP-ribose as a ligand. Previously identified as displaying an Appr-1"-p (ADP-ribose-1"-monophosphate) processing activity, the macro domain may play roles in distinct ADP-ribose pathways, such as the ADP-ribosylation of proteins, an important post-translational modification which occurs in DNA repair, transcription, chromatin biology, and long-term memory formation, among other processes.

>cd02901 Macro_Poa1p_like Macro domain, Poa1p_like family

Probab=99.70  E-value=9.9e-17  Score=105.13  Aligned_cols=78  Identities=15%  Similarity=0.200  Sum_probs=70.2

Q ss_pred             ceeccCCCCCCceEEEecCCCcCCCCCcHHHHHHHHHHHHHhHHhCCCcEEEecccccCCCCcChHHHHHHHHHHHHH
Q 034374            2 LKECRGFKLPVSHVIHTVGPVFNFHCNPEDILRSAYKNCLSVGKANNIQYIAFPAISCGVSQYPPDEAATIAISTVKE   79 (96)
Q Consensus         2 a~~T~ag~L~~k~IiH~v~P~~~~~~~~~~~L~~~~~~~L~~a~~~~~~SIAfPaigtG~~g~p~~~~a~~~~~~i~~   79 (96)
                      ++++.++++++++|+|+++|.|.+...+.+.|+++++++++.|++++++|||||.||+|.+|+|.+++++++.+.+.+
T Consensus        62 ~~~~~~~~~~~~~I~~~~t~~~~~~~~~~~~l~~~l~~~~~~a~~~~~~sva~P~iG~G~~G~~w~~v~~ii~~~~~~  139 (140)
T cd02901          62 AVLERGSSLVSRYIYNLPTKVHYGPKSRYEAIEKSLRELRAHARDNGIKSVAMPRIGCGLGGLDWEEVEPLIEKALAD  139 (140)
T ss_pred             EEEecCCCCCceEEEEeeccCCCCCCCcHHHHHHHHHHHHHHHHHcCCCEEeeCCCCCcCCCCCHHHHHHHHHHHhcc
Confidence            356778888999999999998877556788999999999999999999999999999999999999999999877653

The macro domain is a high-affinity ADP-ribose binding module found in a variety of proteins as a stand-alone domain or in combination with other domains like in histone macroH2A and some PARPs (poly ADP-ribose polymerases). Some macro domains recognize poly ADP-ribose as a ligand. Previously identified as displaying an Appr-1"-p (ADP-ribose-1"-monophosphate) processing activity, the macro domain may play roles in distinct ADP-ribose pathways, such as the ADP-ribosylation of proteins, an important post-translational modification which occurs in DNA repair, transcription, chromatin biology, and long-term memory formation, among other processes. Members of this family show similarity to the yeast protein Poa1p, reported to be a phosphatase specific for Appr-1"-p, a tRNA splicing metabolite. Poa1p may play a role in tRNA splicing regulation.

>PHA02595 tk

Probab=99.19  E-value=1.8e-10  Score=77.21  Aligned_cols=72  Identities=13%  Similarity=-0.004  Sum_probs=62.1

Q ss_pred             eccCCCCCCceEEEecCCCcCCCC-CcHHHHHHHHHHHHHhHHhCCC-cEEEecccccCCCCcChHHHHHHHHHH
Q 034374            4 ECRGFKLPVSHVIHTVGPVFNFHC-NPEDILRSAYKNCLSVGKANNI-QYIAFPAISCGVSQYPPDEAATIAIST   76 (96)
Q Consensus         4 ~T~ag~L~~k~IiH~v~P~~~~~~-~~~~~L~~~~~~~L~~a~~~~~-~SIAfPaigtG~~g~p~~~~a~~~~~~   76 (96)
                      .|.+++.+-+||+|..+- |+.+. .+.+.|++++++..+.+++++. .|||||.||+|.+|.|.+++.+++.+.
T Consensus        67 ~~~~~~~~~~~I~nl~tq-~~~~~~~~y~ai~~~l~~l~~~~~~~~~~~sIa~P~IG~GlgGl~W~~V~~ii~~~  140 (154)
T PHA02595         67 WEKYVGGHKAYCFNLYTQ-FDPGPNLEYSALMNCFEELNEVFEGTLFKPTIYIPRIGAGIAGGDWDKIEAIIDEA  140 (154)
T ss_pred             EEeeccCCCEEEEEEecc-CCCCCCCcHHHHHHHHHHHHHHHHhcCCCcEEeeCCCCccCCCCCHHHHHHHHHHh
Confidence            456677778999999876 87665 3567899999999999999998 999999999999999999999998654

4 hypothetical protein; Provisional

>TIGR02452 conserved hypothetical protein TIGR02452

Probab=98.32  E-value=4.7e-06  Score=60.53  Aligned_cols=79  Identities=23%  Similarity=0.259  Sum_probs=63.3

Q ss_pred             EEEecCCCcCC----C-C---CcHHHHHHHHHHHHHhHHhCCCcEEEecccccCCCCcChHHHHHHHHHHHH---HHHhc
Q 034374           15 VIHTVGPVFNF----H-C---NPEDILRSAYKNCLSVGKANNIQYIAFPAISCGVSQYPPDEAATIAISTVK---EFAND   83 (96)
Q Consensus        15 IiH~v~P~~~~----~-~---~~~~~L~~~~~~~L~~a~~~~~~SIAfPaigtG~~g~p~~~~a~~~~~~i~---~~~~~   83 (96)
                      ||-++.|++..    . .   +..+.+++-++.+|..|..+|.+++-+-|.|+|.|+-|+.++|+...+.+.   +|...
T Consensus       164 vIT~aA~n~~~~~~~~~~~~~~~~~~~k~rm~~vL~ia~~~g~~~LVLGA~GCG~f~N~p~~VA~~f~evL~~~~ef~g~  243 (266)
T TIGR02452       164 FITSPAPNARPVARLYPISYEEIPMTLKNRMYKVLNIAEDQNIDALVLGAWGCGVFGNDPAEVAKIFHDLLSPGGIFKGR  243 (266)
T ss_pred             EEEeCCCCCcchhccCCCccHHHHHHHHHHHHHHHHHHHHcCCCEEEECCccccccCCCHHHHHHHHHHHhccCccccCc
Confidence            66666777641    1 1   235789999999999999999999999999999999999999999998887   56556


Q ss_pred             CCceEEEEEe
Q 034374           84 FKEVSHDKFC   93 (96)
Q Consensus        84 ~~~v~~Vi~~   93 (96)
                      ++.|-|-+++
T Consensus       244 F~~VvFAI~d  253 (266)
T TIGR02452       244 IKEVVFAILD  253 (266)
T ss_pred             eeEEEEEEeC
Confidence            6666665553

Members of this uncharacterized protein family are found in Streptomyces, Nostoc sp. PCC 7120, Clostridium acetobutylicum, Lactobacillus johnsonii NCC 533, Deinococcus radiodurans, and Pirellula sp. for a broad but sparse phylogenetic distibution that at least suggests lateral gene transfer.

>PF14519 Macro_2: Macro-like domain; PDB: 1TXZ_A 1TY8_A 1NJR_A

Probab=98.12  E-value=1.4e-05  Score=58.37  Aligned_cols=73  Identities=18%  Similarity=0.302  Sum_probs=50.3

Q ss_pred             CCCCceEEEecC---C---CcCCCC---CcHHHHHHHHHHHHHhHHhCCCcEEEecccccCCCCcChHHHHHHHHHHHHH
Q 034374            9 KLPVSHVIHTVG---P---VFNFHC---NPEDILRSAYKNCLSVGKANNIQYIAFPAISCGVSQYPPDEAATIAISTVKE   79 (96)
Q Consensus         9 ~L~~k~IiH~v~---P---~~~~~~---~~~~~L~~~~~~~L~~a~~~~~~SIAfPaigtG~~g~p~~~~a~~~~~~i~~   79 (96)
                      +-.++||+|+-+   |   .|+...   ..-+.+-+++.|.+..+. ..+.++.+|-||||..|.|++.+|+.|.-|++-
T Consensus       134 ~~~i~yIi~~PTMv~P~~~~~d~~~~~~t~~~~vfn~~WN~l~~~p-~~IdtLiiPGLgTGyGgV~p~~sAk~M~fAl~l  212 (280)
T PF14519_consen  134 NWGIRYIIHVPTMVVPEKPVWDREVPYETGWSLVFNAMWNALRHAP-EDIDTLIIPGLGTGYGGVPPEISAKQMAFALRL  212 (280)
T ss_dssp             -TTEEEEEEEEEES-TTS-S--TT-TTTTTHHHHHHHHHHHHHTS--TT-SEEEE--SSSSTT---HHHHHHHHHHHHHH
T ss_pred             ccCceEEEECCccccCCCcccchhHHHHHHHHHHHHHHHHhhccCC-CCCCeEEECCcccccCCCCHHHHHHHHHHHHHH
Confidence            346789999865   2   344432   234567788889888764 579999999999999999999999999999998


Q ss_pred             HHh
Q 034374           80 FAN   82 (96)
Q Consensus        80 ~~~   82 (96)
                      |..
T Consensus       213 ~~l  215 (280)
T PF14519_consen  213 YNL  215 (280)
T ss_dssp             HHT
T ss_pred             HHh
Confidence            864

>COG4295 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.36  E-value=0.0016  Score=46.45  Aligned_cols=65  Identities=22%  Similarity=0.320  Sum_probs=55.6

Q ss_pred             HHHHHHHHHHHHHhHHhCCCcEEEecccccCCCCcChHHHHHHHHHHHHHHHhcCCceEEEEEee
Q 034374           30 EDILRSAYKNCLSVGKANNIQYIAFPAISCGVSQYPPDEAATIAISTVKEFANDFKEVSHDKFCL   94 (96)
Q Consensus        30 ~~~L~~~~~~~L~~a~~~~~~SIAfPaigtG~~g~p~~~~a~~~~~~i~~~~~~~~~v~~Vi~~~   94 (96)
                      .+.|..-.++.|.+|..++.+.+.+-|-|+|+|+-++..+|+++.+.+.+-.+.+...+-|+|.+
T Consensus       199 ~~~l~~R~~kil~la~~~~~~alVLGAwGCGVFrNdPA~Va~iF~~~Lleg~~~~g~fkhv~Fav  263 (285)
T COG4295         199 REALNIRIKKILKLALSKNPKALVLGAWGCGVFRNDPADVAKIFCQQLLEGISKLGDFKHVVFAV  263 (285)
T ss_pred             HHHHHHHHHHHHHHHhhcCCCeEEEcccccccccCCHHHHHHHHHHHHhhhhhhhcccceEEEEE
Confidence            46788889999999999999999999999999999999999999999887766555555555543

>PF10154 DUF2362: Uncharacterized conserved protein (DUF2362); InterPro: IPR019311 This is a family of proteins conserved from nematodes to humans

Probab=95.94  E-value=0.072  Score=42.12  Aligned_cols=81  Identities=19%  Similarity=0.114  Sum_probs=61.2

Q ss_pred             ceeccCCCCC-CceEEEecCCCcCCCC--CcHHHHHHHHHHHHHhHHhCCCcEEEecccccCCCCcCh-----HHHHHHH
Q 034374            2 LKECRGFKLP-VSHVIHTVGPVFNFHC--NPEDILRSAYKNCLSVGKANNIQYIAFPAISCGVSQYPP-----DEAATIA   73 (96)
Q Consensus         2 a~~T~ag~L~-~k~IiH~v~P~~~~~~--~~~~~L~~~~~~~L~~a~~~~~~SIAfPaigtG~~g~p~-----~~~a~~~   73 (96)
                      ..||.-.||. +.-|+|.|.-.-....  ++..-+-..+||+|+.|.++++.+|.+|.+-+....-..     -.=|+..
T Consensus       377 ~yitrhsnl~~~~vvfhlv~d~~~~~~~~~~r~~~~~glrnil~~~~~~~i~t~~iplll~~~~~e~mt~~wc~~Raelv  456 (510)
T PF10154_consen  377 FYITRHSNLSDVHVVFHLVVDDSLRSSNINSRHPIILGLRNILRTASRYDITTLTIPLLLVHEMSEEMTIPWCLKRAELV  456 (510)
T ss_pred             eEEecccCcccceEEEEEEecCccccCCCCCcChHHHHHHHHHHHHHHcCCCeeeehhhhcCccchhccHHHHHHHHHHH
Confidence            4678888888 5678999965433222  566778889999999999999999999999988654322     2336777


Q ss_pred             HHHHHHHHh
Q 034374           74 ISTVKEFAN   82 (96)
Q Consensus        74 ~~~i~~~~~   82 (96)
                      ++.++-|+-
T Consensus       457 ~k~vkg~~~  465 (510)
T PF10154_consen  457 FKCVKGFMM  465 (510)
T ss_pred             HHHHHHHHH
Confidence            888888875

The function is not known.

>cd03331 Macro_Poa1p_like_SNF2 Macro domain, Poa1p_like family, SNF2 subfamily

Probab=95.79  E-value=0.098  Score=35.10  Aligned_cols=63  Identities=11%  Similarity=0.019  Sum_probs=49.0

Q ss_pred             ceEEEecCCCcCCCC----CcHHHHHHHHHHHHHhHHhCCCcEEEecccccCCCCcChHHHHHHHHHH
Q 034374           13 SHVIHTVGPVFNFHC----NPEDILRSAYKNCLSVGKANNIQYIAFPAISCGVSQYPPDEAATIAIST   76 (96)
Q Consensus        13 k~IiH~v~P~~~~~~----~~~~~L~~~~~~~L~~a~~~~~~SIAfPaigtG~~g~p~~~~a~~~~~~   76 (96)
                      .||.-.+++...+..    -+.+.|++|+...-..|.. +-.||.+|=||+|.+|.|=+..-+++-+.
T Consensus        82 ~~va~l~~q~~~~~~~~~~~~~~aL~~~L~~~~~~a~~-~~~sVhmPrIg~Gl~g~~W~~~E~li~k~  148 (152)
T cd03331          82 DWVALIVAQHRDKSNPLSGIKLSALEKGLKKIYFAAKQ-KSASVHLPRIGHSTKSFNWYGTERLIRKY  148 (152)
T ss_pred             eEEEEEEeEccCCCCCCCccCHHHHHHHHHHHHHHHHc-CCCEEEeCCCCCCCCCCCHHHHHHHHHHH
Confidence            577788887654432    3567889998888888866 55899999999999999998887776443

The macro domain is a high-affinity ADP-ribose binding module found in a variety of proteins as a stand-alone domain or in combination with other domains like in histone macroH2A and some PARPs (poly ADP-ribose polymerases). Some macro domains recognize poly ADP-ribose as a ligand. Previously identified as displaying an Appr-1"-p (ADP-ribose-1"-monophosphate) processing activity, the macro domain may play roles in distinct ADP-ribose pathways, such as the ADP-ribosylation of proteins, an important post-translational modification which occurs in DNA repair, transcription, chromatin biology, and long-term memory formation, among other processes. Members of this subfamily contain a C-terminal macro domain that show similarity to the yeast protein Poa1p, reported to be a phosphatase specific for Appr-1"-p, a tRNA splicing metabolite. In addition, they also contain an SNF2 domain, defined by the presence of seven

>PHA00684 hypothetical protein

Probab=83.25  E-value=6.7  Score=25.71  Aligned_cols=49  Identities=10%  Similarity=0.127  Sum_probs=43.7

Q ss_pred             cHHHHHHHHHHHHHhHHhCCCcEEEecccccCCCCcChHHHHHHHHHHH
Q 034374           29 PEDILRSAYKNCLSVGKANNIQYIAFPAISCGVSQYPPDEAATIAISTV   77 (96)
Q Consensus        29 ~~~~L~~~~~~~L~~a~~~~~~SIAfPaigtG~~g~p~~~~a~~~~~~i   77 (96)
                      ..+.++..+..-+..|.++--.+-=+..||+|+.||..++.|....++.
T Consensus        54 ~l~~I~~~V~~Fi~ya~~hp~~~F~VT~IGCGiAG~~~~eIAplF~~a~  102 (128)
T PHA00684         54 SLPDIGAAVNRFIAYATAHPHLNFQVTRVGCGLAGHLDADIAPMFRDAP  102 (128)
T ss_pred             cHHHHHHHHHHHHHHHHhCCCcEEEeeeeccccccCCHHHHHHHHhcCC
Confidence            4578999999999999999999999999999999999999998876554

>PLN02214 cinnamoyl-CoA reductase

Probab=83.23  E-value=2.9  Score=30.70  Aligned_cols=40  Identities=20%  Similarity=0.389  Sum_probs=27.5

Q ss_pred             CceEEEecCCCcCCCCCcHHHHH---HHHHHHHHhHHhCCCcEEEe
Q 034374           12 VSHVIHTVGPVFNFHCNPEDILR---SAYKNCLSVGKANNIQYIAF   54 (96)
Q Consensus        12 ~k~IiH~v~P~~~~~~~~~~~L~---~~~~~~L~~a~~~~~~SIAf   54 (96)
                      +++|||+++|....   ..+.++   ....+.++.|.+.+++.+-+
T Consensus        82 ~d~Vih~A~~~~~~---~~~~~~~nv~gt~~ll~aa~~~~v~r~V~  124 (342)
T PLN02214         82 CDGVFHTASPVTDD---PEQMVEPAVNGAKFVINAAAEAKVKRVVI  124 (342)
T ss_pred             CCEEEEecCCCCCC---HHHHHHHHHHHHHHHHHHHHhcCCCEEEE
Confidence            68999999986432   222232   34567888888889887665

>CHL00194 ycf39 Ycf39; Provisional

Probab=82.06  E-value=16  Score=26.30  Aligned_cols=43  Identities=19%  Similarity=0.149  Sum_probs=29.0

Q ss_pred             CceEEEecCCCcCCCCCcHHHHHHHHHHHHHhHHhCCCcEEEe
Q 034374           12 VSHVIHTVGPVFNFHCNPEDILRSAYKNCLSVGKANNIQYIAF   54 (96)
Q Consensus        12 ~k~IiH~v~P~~~~~~~~~~~L~~~~~~~L~~a~~~~~~SIAf   54 (96)
                      ++.|||++++.|.......+.=.....+.++.|.+.|++.+-+
T Consensus        65 ~d~Vi~~~~~~~~~~~~~~~~~~~~~~~l~~aa~~~gvkr~I~  107 (317)
T CHL00194         65 VTAIIDASTSRPSDLYNAKQIDWDGKLALIEAAKAAKIKRFIF  107 (317)
T ss_pred             CCEEEECCCCCCCCccchhhhhHHHHHHHHHHHHHcCCCEEEE
Confidence            6899999887664322212222345578889899999987765

>PRK06052 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase; Provisional

Probab=81.62  E-value=15  Score=28.02  Aligned_cols=46  Identities=17%  Similarity=0.257  Sum_probs=37.5

Q ss_pred             HHHHHHHHHHHHHhHHhCCCcEEEe--cccccCC-CCcChHHHHHHHHH
Q 034374           30 EDILRSAYKNCLSVGKANNIQYIAF--PAISCGV-SQYPPDEAATIAIS   75 (96)
Q Consensus        30 ~~~L~~~~~~~L~~a~~~~~~SIAf--PaigtG~-~g~p~~~~a~~~~~   75 (96)
                      ...+.+.+++.++.+.+.|++-|.+  |+||+|. .+|+.+.+.+++=.
T Consensus       141 a~~ia~~l~~e~~~l~~~gv~~IqIDEP~l~~~~~~~~~~~~~i~Al~~  189 (344)
T PRK06052        141 AKSVERFVENAIKSAKNFKIKTISIDEPSLGINPEIQFSDDEIISALTV  189 (344)
T ss_pred             HHHHHHHHHHHHHHHHHCCCCEEEecCcccccCCccccCHHHHHHHHHH
Confidence            3677788888888899999999999  9999996 67777777665433

>PF01073 3Beta_HSD: 3-beta hydroxysteroid dehydrogenase/isomerase family; InterPro: IPR002225 The enzyme 3 beta-hydroxysteroid dehydrogenase/5-ene-4-ene isomerase (3 beta-HSD) catalyses the oxidation and isomerisation of 5-ene-3 beta-hydroxypregnene and 5-ene-hydroxyandrostene steroid precursors into the corresponding 4-ene-ketosteroids necessary for the formation of all classes of steroid hormones

Probab=81.03  E-value=6.5  Score=28.37  Aligned_cols=43  Identities=23%  Similarity=0.401  Sum_probs=29.6

Q ss_pred             CceEEEecCCCcCCCC-CcHHH---HHHHHHHHHHhHHhCCCcEEEe
Q 034374           12 VSHVIHTVGPVFNFHC-NPEDI---LRSAYKNCLSVGKANNIQYIAF   54 (96)
Q Consensus        12 ~k~IiH~v~P~~~~~~-~~~~~---L~~~~~~~L~~a~~~~~~SIAf   54 (96)
                      |+.|||+++|.-..+. ..++.   =-+..++.|+.|.+.+++.+-+
T Consensus        67 ~d~V~H~Aa~~~~~~~~~~~~~~~vNV~GT~nvl~aa~~~~VkrlVy  113 (280)
T PF01073_consen   67 VDVVFHTAAPVPPWGDYPPEEYYKVNVDGTRNVLEAARKAGVKRLVY  113 (280)
T ss_pred             CceEEEeCccccccCcccHHHHHHHHHHHHHHHHHHHHHcCCCEEEE
Confidence            7899999987533332 22222   2256779999999999997755

3Beta_HSD; GO: 0003854 3-beta-hydroxy-delta5-steroid dehydrogenase activity, 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0006694 steroid biosynthetic process, 0055114 oxidation-reduction process

>PLN02657 3,8-divinyl protochlorophyllide a 8-vinyl reductase

Probab=80.89  E-value=22  Score=26.85  Aligned_cols=44  Identities=20%  Similarity=0.174  Sum_probs=29.1

Q ss_pred             CCceEEEecCCCcCCCCCcHHHHHHHHHHHHHhHHhCCCcEEEe
Q 034374           11 PVSHVIHTVGPVFNFHCNPEDILRSAYKNCLSVGKANNIQYIAF   54 (96)
Q Consensus        11 ~~k~IiH~v~P~~~~~~~~~~~L~~~~~~~L~~a~~~~~~SIAf   54 (96)
                      +++.|||++++.+....+..+.-.....+.++.|.+.|.+.+-+
T Consensus       136 ~~D~Vi~~aa~~~~~~~~~~~vn~~~~~~ll~aa~~~gv~r~V~  179 (390)
T PLN02657        136 PVDVVVSCLASRTGGVKDSWKIDYQATKNSLDAGREVGAKHFVL  179 (390)
T ss_pred             CCcEEEECCccCCCCCccchhhHHHHHHHHHHHHHHcCCCEEEE
Confidence            57999999987654322212222345568888899999887665

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	96
1spv_A	184	Crystal Structure Of The Putative Phosphatase Of Es		5e-12
2x47_A	235	Crystal Structure Of Human Macrod1 Length = 235		1e-09
3q6z_A	214	Human Parp14 (Artd8)-Macro Domain 1 In Complex With		5e-06
1zr5_A	214	Crystal Structure Of The Macro-Domain Of Human Core		7e-06
1zr3_A	211	Crystal Structure Of The Macro-Domain Of Human Core		8e-06
1yd9_A	193	1.6a Crystal Structure Of The Non-Histone Domain Of		9e-06
3q71_A	221	Human Parp14 (Artd8) - Macro Domain 2 In Complex Wi		4e-04

>pdb|1SPV|A Chain A, Crystal Structure Of The Putative Phosphatase Of Escherichia Coli, Northeast Structural Genomoics Target Er58 Length = 184

Iteration: 1
 Score = 65.9 bits (159), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 36/72 (50%), Positives = 44/72 (61%), Gaps = 1/72 (1%)
Query: 10  LPVSHVIHTVGPVFNFHCNPED-ILRSAYKNCLSVGKANNIQYIAFPAISCGVSQYPPDE 68
           LP   V+HTVGPV+      ED +L+ AY N L +  AN+   +AFPAIS GV  YP   
Sbjct: 73  LPAKAVVHTVGPVWRGGEQNEDQLLQDAYLNSLRLVAANSYTSVAFPAISTGVYGYPRAA 132
Query: 69  AATIAISTVKEF 80
           AA IA+ TV EF
Sbjct: 133 AAEIAVKTVSEF 144

>pdb|2X47|A Chain A, Crystal Structure Of Human Macrod1 Length = 235

Iteration: 1
 Score = 58.2 bits (139), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 30/82 (36%), Positives = 48/82 (58%), Gaps = 2/82 (2%)
Query: 7   GFKLPVSHVIHTVGPVFNFHCNPEDI--LRSAYKNCLSVGKANNIQYIAFPAISCGVSQY 64
           G++LP  +VIHTVGP+     +      LRS Y + L +   + ++ +AFP IS GV  Y
Sbjct: 125 GYRLPAKYVIHTVGPIAYGEPSASQAAELRSCYLSSLDLLLEHRLRSVAFPCISTGVFGY 184
Query: 65  PPDEAATIAISTVKEFANDFKE 86
           P + AA I ++T++E+    K+
Sbjct: 185 PCEAAAEIVLATLREWLEQHKD 206

>pdb|3Q6Z|A Chain A, Human Parp14 (Artd8)-Macro Domain 1 In Complex With Adenosine-5- Diphosphoribose Length = 214

Iteration: 1
 Score = 46.2 bits (108), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 27/73 (36%), Positives = 38/73 (52%), Gaps = 2/73 (2%)
Query: 9   KLPVSHVIHTVGPVFNFHCNPE--DILRSAYKNCLSVGKANNIQYIAFPAISCGVSQYPP 66
           KLP  HVIH VGP ++ +  P    +LR A +  L + +    + IA PAIS GV  +P 
Sbjct: 106 KLPYHHVIHAVGPRWSGYEAPRCVYLLRRAVQLSLCLAEKYKYRSIAIPAISSGVFGFPL 165
Query: 67  DEAATIAISTVKE 79
                  +S +KE
Sbjct: 166 GRCVETIVSAIKE 178

>pdb|1ZR5|A Chain A, Crystal Structure Of The Macro-Domain Of Human Core Histone Variant Macroh2a1.2 Length = 214

Iteration: 1
 Score = 45.8 bits (107), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 24/75 (32%), Positives = 38/75 (50%), Gaps = 3/75 (4%)
Query: 7   GFKLPVSHVIHTVGPVFNF-HCNPEDILRSAYKNCLSVGKANNIQYIAFPAISCGVSQYP 65
           G  LP   VIH   PV+    C  E++L    KNCL++     ++ IAFP+I  G + +P
Sbjct: 107 GHGLPAKFVIHCNSPVWGADKC--EELLEKTVKNCLALADDKKLKSIAFPSIGSGRNGFP 164
Query: 66  PDEAATIAISTVKEF 80
              AA + +  +  +
Sbjct: 165 KQTAAQLILKAISSY 179

>pdb|1ZR3|A Chain A, Crystal Structure Of The Macro-Domain Of Human Core Histone Variant Macroh2a1.1 (Form B) Length = 211

Iteration: 1
 Score = 45.4 bits (106), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 24/75 (32%), Positives = 38/75 (50%), Gaps = 3/75 (4%)
Query: 7   GFKLPVSHVIHTVGPVFNF-HCNPEDILRSAYKNCLSVGKANNIQYIAFPAISCGVSQYP 65
           G  LP   VIH   PV+    C  E++L    KNCL++     ++ IAFP+I  G + +P
Sbjct: 104 GHGLPAKFVIHCNSPVWGADKC--EELLEKTVKNCLALADDKKLKSIAFPSIGSGRNGFP 161
Query: 66  PDEAATIAISTVKEF 80
              AA + +  +  +
Sbjct: 162 KQTAAQLILKAISSY 176

>pdb|1YD9|A Chain A, 1.6a Crystal Structure Of The Non-Histone Domain Of The Histone Variant Macroh2a1.1. Length = 193

Iteration: 1
 Score = 45.4 bits (106), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 24/75 (32%), Positives = 38/75 (50%), Gaps = 3/75 (4%)
Query: 7   GFKLPVSHVIHTVGPVFNF-HCNPEDILRSAYKNCLSVGKANNIQYIAFPAISCGVSQYP 65
           G  LP   VIH   PV+    C  E++L    KNCL++     ++ IAFP+I  G + +P
Sbjct: 86  GHGLPAKFVIHCNSPVWGSDKC--EELLEKTVKNCLALADDRKLKSIAFPSIGSGRNGFP 143
Query: 66  PDEAATIAISTVKEF 80
              AA + +  +  +
Sbjct: 144 KQTAAQLILKAISSY 158

>pdb|3Q71|A Chain A, Human Parp14 (Artd8) - Macro Domain 2 In Complex With Adenosine-5- Diphosphoribose Length = 221

Iteration: 1
 Score = 39.7 bits (91), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 25/90 (27%), Positives = 45/90 (50%), Gaps = 3/90 (3%)
Query: 8   FKLPVSHVIHTVGPVF-NFHCNPEDILRSAYKNCLSVGKANNIQYIAFPAISCGVSQYPP 66
           + L   +V+H V P + N   +   I+    + C+ + ++ +++ IAFPAI  G   +P 
Sbjct: 107 WNLDCRYVLHVVAPEWRNGSTSSLKIMEDIIRECMEITESLSLKSIAFPAIGTGNLGFPK 166
Query: 67  DEAATIAISTVKEFA--NDFKEVSHDKFCL 94
           +  A + IS V +F+  N  K +    F L
Sbjct: 167 NIFAELIISEVFKFSSKNQLKTLQEVHFLL 196

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	96
1spv_A	184	Putative polyprotein/phosphatase; structural genom	8e-34
2xd7_A	193	Core histone macro-H2A.2; chromosomal protein, nuc	2e-33
1yd9_A	193	Core histone macro-H2A.1; alpha-beta structure, A1	3e-33
3q6z_A	214	Poly [ADP-ribose] polymerase 14; structural genomi	7e-33
3q71_A	221	Poly [ADP-ribose] polymerase 14; structural genomi	1e-32
2x47_A	235	Macro domain-containing protein 1; signaling prote	2e-32
2dx6_A	159	Hypothetical protein TTHA0132; conserved hypotheti	2e-31
1vhu_A	211	Hypothetical protein AF1521; structural genomics,	5e-31
3gqe_A	168	Non-structural protein 3; macro domain, X domain,	3e-28
3kh6_A	199	Poly [ADP-ribose] polymerase 15; macro, PARP, BAL3	8e-28
3gpg_A	168	NSP3, non-structural protein 3; macro domain, X do	9e-28
3ejf_A	176	Non-structural protein 3; IBV, coronavirus, X-doma	4e-26
3eti_A	168	X (ADRP) domain, macro domain of non-structural pr	1e-24
2acf_A	182	Replicase polyprotein 1AB; ADRP domain, SARS NSP-3	2e-24
2vri_A	174	Non-structural protein 3; RNA replication, nucleot	6e-23
3ejg_A	193	Non-structural protein 3; HCOV 229E, X-domain, mac	8e-23
1njr_A	284	32.1 kDa protein in ADH3-RCA1 intergenic region; s	1e-14
2jyc_A	160	Uncharacterized protein C6ORF130; macro domain, A1	9e-05
3sig_A	277	PArg, poly(ADP-ribose) glycohydrolase; HET: AR6; 1	1e-04
2eee_A	149	Uncharacterized protein C6ORF130; macro domain, A1	2e-04

>1spv_A Putative polyprotein/phosphatase; structural genomoics, alpha/beta monomeric protein, structural genomics, PSI, protein structure initiative; HET: MES; 2.00A {Escherichia coli} SCOP: c.50.1.2 Length = 184

 Score =  113 bits (286), Expect = 8e-34
 Identities = 37/90 (41%), Positives = 45/90 (50%), Gaps = 1/90 (1%)

Query: 6   RGFKLPVSHVIHTVGPVFNFHCNPED-ILRSAYKNCLSVGKANNIQYIAFPAISCGVSQY 64
               LP   V+HTVGPV+      ED +L+ AY N L +  AN+   +AFPAIS GV  Y
Sbjct: 69  LAGDLPAKAVVHTVGPVWRGGEQNEDQLLQDAYLNSLRLVAANSYTSVAFPAISTGVYGY 128

Query: 65  PPDEAATIAISTVKEFANDFKEVSHDKFCL 94
           P   AA IA+ TV EF           F  
Sbjct: 129 PRAAAAEIAVKTVSEFITRHALPEQVYFVC 158

>2xd7_A Core histone macro-H2A.2; chromosomal protein, nucleosome core, chromatin regulator, nucleus, DNA-binding protein, phosphoprotein; 2.09A {Homo sapiens} Length = 193

 Score =  113 bits (284), Expect = 2e-33
 Identities = 23/94 (24%), Positives = 36/94 (38%), Gaps = 3/94 (3%)

Query: 3   KECRGFKLPVSHVIHTVGPVFNFHCNPEDILRSAYKNCLSVGKANNIQYIAFPAISCGVS 62
              +   L    VIH   P +      E+ L    KNCLS  +   ++ +AFP    G +
Sbjct: 85  AVSQSSGLAAKFVIHCHIPQWGSD-KCEEQLEETIKNCLSAAEDKKLKSVAFPPFPSGRN 143

Query: 63  QYPPDEAATIAISTVKEFANDFKEVSHDK--FCL 94
            +P   AA + +  +    +D    S     F L
Sbjct: 144 CFPKQTAAQVTLKAISAHFDDSSASSLKNVYFLL 177

>1yd9_A Core histone macro-H2A.1; alpha-beta structure, A1PP domain, macro-domain, structural protein; 1.60A {Rattus norvegicus} SCOP: c.50.1.2 PDB: 1zr3_A* 2fxk_A 3iid_A* 3iif_A* 1zr5_A Length = 193

 Score =  112 bits (282), Expect = 3e-33
 Identities = 26/94 (27%), Positives = 40/94 (42%), Gaps = 3/94 (3%)

Query: 3   KECRGFKLPVSHVIHTVGPVFNFHCNPEDILRSAYKNCLSVGKANNIQYIAFPAISCGVS 62
               G  LP   VIH   PV+      E++L    KNCL++     ++ IAFP+I  G +
Sbjct: 82  AVSAGHGLPAKFVIHCNSPVWGSD-KCEELLEKTVKNCLALADDRKLKSIAFPSIGSGRN 140

Query: 63  QYPPDEAATIAISTVKEFANDFKEVSHDK--FCL 94
            +P   AA + +  +  +       S     F L
Sbjct: 141 GFPKQTAAQLILKAISSYFVSTMSSSIKTVYFVL 174

>3q6z_A Poly [ADP-ribose] polymerase 14; structural genomics consortium, SGC, ADP-ribose binding, TRA; HET: APR; 2.23A {Homo sapiens} Length = 214

 Score =  112 bits (282), Expect = 7e-33
 Identities = 29/94 (30%), Positives = 42/94 (44%), Gaps = 5/94 (5%)

Query: 6   RGFKLPVSHVIHTVGPVFNFHCNPEDI--LRSAYKNCLSVGKANNIQYIAFPAISCGVSQ 63
           +  KLP  HVIH VGP ++ +  P  +  LR A +  L + +    + IA PAIS GV  
Sbjct: 103 KAGKLPYHHVIHAVGPRWSGYEAPRCVYLLRRAVQLSLCLAEKYKYRSIAIPAISSGVFG 162

Query: 64  YPPDEAATIAISTVKEFANDFKEVSHDK---FCL 94
           +P        +S +KE     K+    K      
Sbjct: 163 FPLGRCVETIVSAIKENFQFKKDGHCLKEIYLVD 196

>3q71_A Poly [ADP-ribose] polymerase 14; structural genomics, structural genomics consortium, SGC, transferase, PARP14 macro 2; HET: AR6; 2.20A {Homo sapiens} Length = 221

 Score =  111 bits (280), Expect = 1e-32
 Identities = 22/95 (23%), Positives = 45/95 (47%), Gaps = 3/95 (3%)

Query: 3   KECRGFKLPVSHVIHTVGPVFNFHCNPED-ILRSAYKNCLSVGKANNIQYIAFPAISCGV 61
            +   + L   +V+H V P +         I+    + C+ + ++ +++ IAFPAI  G 
Sbjct: 102 LKTSSWNLDCRYVLHVVAPEWRNGSTSSLKIMEDIIRECMEITESLSLKSIAFPAIGTGN 161

Query: 62  SQYPPDEAATIAISTVKEFANDFKEVSHDK--FCL 94
             +P +  A + IS V +F++  +  +  +  F L
Sbjct: 162 LGFPKNIFAELIISEVFKFSSKNQLKTLQEVHFLL 196

>2x47_A Macro domain-containing protein 1; signaling protein, signal transduction, estrogen signaling; 1.70A {Homo sapiens} Length = 235

 Score =  111 bits (280), Expect = 2e-32
 Identities = 33/102 (32%), Positives = 52/102 (50%), Gaps = 16/102 (15%)

Query: 1   MLKECR--------------GFKLPVSHVIHTVGPVFNFHCNP--EDILRSAYKNCLSVG 44
           +  ECR              G++LP  +VIHTVGP+     +      LRS Y + L + 
Sbjct: 105 LTDECRTLQSCKTGKAKITGGYRLPAKYVIHTVGPIAYGEPSASQAAELRSCYLSSLDLL 164

Query: 45  KANNIQYIAFPAISCGVSQYPPDEAATIAISTVKEFANDFKE 86
             + ++ +AFP IS GV  YP + AA I ++T++E+    K+
Sbjct: 165 LEHRLRSVAFPCISTGVFGYPCEAAAEIVLATLREWLEQHKD 206

>2dx6_A Hypothetical protein TTHA0132; conserved hypothetical protein, structural genomics, NPPSFA; 1.78A {Thermus thermophilus} PDB: 3v45_A Length = 159

 Score =  107 bits (269), Expect = 2e-31
 Identities = 20/99 (20%), Positives = 37/99 (37%), Gaps = 16/99 (16%)

Query: 1   MLKECR--------------GFKLPVSHVIHTVGPVFNFHCNPEDILRSAYKNCLSVGKA 46
           + +EC                  LPV +VIH             + +R A K+ L     
Sbjct: 45  IQEECDRIGKIRVGEAAVTGAGNLPVRYVIHAAVLGDEPAS--LETVRKATKSALEKAVE 102

Query: 47  NNIQYIAFPAISCGVSQYPPDEAATIAISTVKEFANDFK 85
             ++ +AFP +  GV   P +  A + +  +K+  +  +
Sbjct: 103 LGLKTVAFPLLGTGVGGLPVEAVARVMLEEIKKAPDTLE 141

>1vhu_A Hypothetical protein AF1521; structural genomics, unknown function; HET: MSE MES; 1.34A {Archaeoglobus fulgidus} SCOP: c.50.1.2 PDB: 2bfq_A* 1hjz_A* 2bfr_A* Length = 211

 Score =  107 bits (269), Expect = 5e-31
 Identities = 24/95 (25%), Positives = 39/95 (41%), Gaps = 9/95 (9%)

Query: 6   RGFKLP---VSHVIHTVGPVFNFHCNPED--ILRSAYKNCLSVGKANNIQYIAFPAISCG 60
               L    + +V HTVGP+ +   + E    L  A+   L   +   ++ IAFPA+S G
Sbjct: 93  PAMNLEERGIKYVFHTVGPICSGMWSEELKEKLYKAFLGPLEKAEEMGVESIAFPAVSAG 152

Query: 61  VSQYPPDEAATIAISTVKEFAND-FKEVSHDKFCL 94
           +     ++     +  VK F     KEV      +
Sbjct: 153 IYGCDLEKVVETFLEAVKNFKGSAVKEV---ALVI 184

>3gqe_A Non-structural protein 3; macro domain, X domain, venezuelan equine encephalitis virus alphavirus; HET: BCN; 2.30A {Venezuelan equine encephalitis virus} PDB: 3gqo_A* Length = 168

 Score = 99.2 bits (248), Expect = 3e-28
 Identities = 21/81 (25%), Positives = 31/81 (38%), Gaps = 2/81 (2%)

Query: 9   KLPVSHVIHTVGPVFNFHCNPED--ILRSAYKNCLSVGKANNIQYIAFPAISCGVSQYPP 66
           K    H+IH VGP FN     E    L  AY++   +   NN + +A P +S G+     
Sbjct: 61  KGAAKHIIHAVGPNFNKVSEVEGDKQLAEAYESIAKIVNDNNYKSVAIPLLSTGIFSGNK 120

Query: 67  DEAATIAISTVKEFANDFKEV 87
           D         +        +V
Sbjct: 121 DRLTQSLNHLLTALDTTDADV 141

>3gpg_A NSP3, non-structural protein 3; macro domain, X domain, alphavirus, VIZI enzymes involved in replication, ATP-binding, cell membrane endosome; 1.65A {Chikungunya virus} PDB: 3gpo_A* 3gpq_A Length = 168

 Score = 98.0 bits (245), Expect = 9e-28
 Identities = 19/84 (22%), Positives = 28/84 (33%), Gaps = 5/84 (5%)

Query: 6   RGFKLPVSHVIHTVGPVFNFHCNPED--ILRSAYKNCLSVGKANNIQYIAFPAISCGVSQ 63
                PV   IH VGP F+ +   E    L +AY+          +  +A P +S GV  
Sbjct: 67  MCGTYPV---IHAVGPNFSNYSESEGDRELAAAYREVAKEVTRLGVNSVAIPLLSTGVYS 123

Query: 64  YPPDEAATIAISTVKEFANDFKEV 87
              D              +   +V
Sbjct: 124 GGKDRLTQSLNHLFTAMDSTDADV 147

>3ejf_A Non-structural protein 3; IBV, coronavirus, X-domain, macro domain, NSP3, ADRP, hydrolase, ribosomal frameshifting; 1.60A {Avian infectious bronchitis virus} PDB: 3eke_A* 3ewo_A 3ewp_A* Length = 176

 Score = 94.2 bits (235), Expect = 4e-26
 Identities = 17/106 (16%), Positives = 31/106 (29%), Gaps = 20/106 (18%)

Query: 1   MLKECR---------------GFKLPVSHVIHTVGPVFNFHCNPEDILRSAYKNCLSVGK 45
            ++ C                 F   +  V + VGP    + N  + L +AYKN L    
Sbjct: 65  FVEYCEDYVKKHGPQQRLVTPSFVKGIQCVNNVVGPRHGDN-NLHEKLVAAYKNVL---- 119

Query: 46  ANNIQYIAFPAISCGVSQYPPDEAATIAISTVKEFANDFKEVSHDK 91
            + +     P +S G+       +        +         S  +
Sbjct: 120 VDGVVNYVVPVLSLGIFGVDFKMSIDAMREAFEGCTIRVLLFSLSQ 165

>3eti_A X (ADRP) domain, macro domain of non-structural protein 3; coronavirus, X domain, RNA binding protein; 2.20A {Feline infectious peritonitis virus} PDB: 3ew5_A* 3jzt_A* Length = 168

 Score = 90.0 bits (224), Expect = 1e-24
 Identities = 16/72 (22%), Positives = 25/72 (34%), Gaps = 6/72 (8%)

Query: 9   KLPVSHVIHTVGPVFNFHCNPEDILRSAYKNCLSVGKANNIQYIAFPAISCGVSQYPPDE 68
            L    V++ VGP        E  L + YK             I  P IS G+ +   + 
Sbjct: 82  VLEHLSVMNAVGPRNGDS-RVEGKLCNVYKAIA-----KCDGKILTPLISVGIFKVKLEV 135

Query: 69  AATIAISTVKEF 80
           +    + TV + 
Sbjct: 136 SLQCLLKTVTDR 147

>2acf_A Replicase polyprotein 1AB; ADRP domain, SARS NSP-3, APPR-1-P phosphatase, structural GE joint center for structural genomics, JCSG; 1.40A {Sars coronavirus TOR2} SCOP: c.50.1.2 PDB: 2fav_A* Length = 182

 Score = 89.7 bits (223), Expect = 2e-24
 Identities = 18/75 (24%), Positives = 32/75 (42%), Gaps = 8/75 (10%)

Query: 6   RGFKLPVSHVIHTVGPVFNFHCNPEDILRSAYKNCLSVGKANNIQYIAFPAISCGVSQYP 65
            G  L     +H VGP  N       +L++AY+N       N+   +  P +S G+    
Sbjct: 90  SGHNLA-KKCLHVVGPNLNAG-EDIQLLKAAYENF------NSQDILLAPLLSAGIFGAK 141

Query: 66  PDEAATIAISTVKEF 80
           P ++  + + TV+  
Sbjct: 142 PLQSLQVCVQTVRTQ 156

>2vri_A Non-structural protein 3; RNA replication, nucleotide-binding, endonuclease, macro domain, viral protein, ATP-binding, exonuclease; 1.8A {Human coronavirus NL63} Length = 174

 Score = 85.8 bits (213), Expect = 6e-23
 Identities = 19/113 (16%), Positives = 32/113 (28%), Gaps = 28/113 (24%)

Query: 1   MLKECR-------------GFKLP--VSHVIHTVGPVFNFHCNPEDILRSAYKNCLSVGK 45
           +    +             G  L     +V + VGP    H     +L  AY + L    
Sbjct: 64  LQSLSKDYISSNGPLKVGAGVMLECEKFNVFNVVGPRTGKH--EHSLLVEAYNSIL---- 117

Query: 46  ANNIQYIAFPAISCGVSQYPPDEAATIAISTVKE------FANDFKEVSHDKF 92
                    P +SCG+     + +     S            +  +E +  KF
Sbjct: 118 -FENGIPLMPLLSCGIFGVRIENSLKALFSCDINKPLQVFVYSSNEEQAVLKF 169

>3ejg_A Non-structural protein 3; HCOV 229E, X-domain, macro domain, NSP3, ADRP, hydrolase, ribosomal frameshifting, RNA-binding; 1.78A {Human coronavirus 229E} PDB: 3ewr_A* 3ewq_A* Length = 193

 Score = 85.9 bits (213), Expect = 8e-23
 Identities = 13/73 (17%), Positives = 23/73 (31%), Gaps = 10/73 (13%)

Query: 7   GFKLPVSHVIHTVGPVFNFHCNPEDILRSAYKNCLSVGKANNIQYIAFPAISCGVSQYPP 66
              L +    + VGP      +  D+L  AY         N       P +SCG+     
Sbjct: 109 CDSLRI---FNVVGPRKG--KHERDLLIKAYNTIN-----NEQGTPLTPILSCGIFGIKL 158

Query: 67  DEAATIAISTVKE 79
           + +  + +     
Sbjct: 159 ETSLEVLLDVCNT 171

>1njr_A 32.1 kDa protein in ADH3-RCA1 intergenic region; structural genomics, dimer, two domain organization, PSI, PR structure initiative; HET: XYL; 1.90A {Saccharomyces cerevisiae} SCOP: c.50.1.2 PDB: 1txz_A* 1ty8_A* Length = 284

 Score = 66.3 bits (161), Expect = 1e-14
 Identities = 13/99 (13%), Positives = 32/99 (32%), Gaps = 10/99 (10%)

Query: 7   GFKLPVSHVIHT---------VGPVFNFHCNPEDILRSAYKNCLSVGKANNIQYIAFPAI 57
             +  + ++IH          +    N      + + +A  N L +    +I  +  P +
Sbjct: 135 ECRDGIRYIIHVPTVVAPSAPIFNPQNPLKTGFEPVFNAMWNAL-MHSPKDIDGLIIPGL 193

Query: 58  SCGVSQYPPDEAATIAISTVKEFANDFKEVSHDKFCLMI 96
             G +  PP  +       ++ +          K  L++
Sbjct: 194 CTGYAGVPPIISCKSMAFALRLYMAGDHISKELKNVLIM 232

>3sig_A PArg, poly(ADP-ribose) glycohydrolase; HET: AR6; 1.28A {Thermomonospora curvata} PDB: 3sih_A 3sii_A* 3sij_A Length = 277

 Score = 38.2 bits (88), Expect = 1e-04
 Identities = 13/61 (21%), Positives = 21/61 (34%), Gaps = 3/61 (4%)

Query: 30  EDILRSAYKNCLSVGKANNIQYIAFPAISCGVSQYPPDEAATI---AISTVKEFANDFKE 86
             +LR      L+  + +  + +   A  CGV    P + A      +     FA  F  
Sbjct: 193 GRVLRGRAAKVLAAARHHGHRRLVLGAWGCGVFGNDPAQVAETFAGLLLDGGPFAGRFAH 252

Query: 87  V 87
           V
Sbjct: 253 V 253

>2eee_A Uncharacterized protein C6ORF130; macro domain, A1PP domain, ADP-ribose binding, rossmann fold, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l8r_A* Length = 149

 Score = 36.9 bits (85), Expect = 2e-04
 Identities = 10/69 (14%), Positives = 26/69 (37%)

Query: 4   ECRGFKLPVSHVIHTVGPVFNFHCNPEDILRSAYKNCLSVGKANNIQYIAFPAISCGVSQ 63
           E    K    ++ + +      H    + L+ + +   S    N +  ++ P I CG+ +
Sbjct: 64  EVAVLKRDGRYIYYLITKKRASHKPTYENLQKSLEAMKSHCLKNGVTDLSMPRIGCGLDR 123

Query: 64  YPPDEAATI 72
              +  + +
Sbjct: 124 LQWENVSAM 132

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	96
3q71_A	221	Poly [ADP-ribose] polymerase 14; structural genomi	100.0
1spv_A	184	Putative polyprotein/phosphatase; structural genom	100.0
3q6z_A	214	Poly [ADP-ribose] polymerase 14; structural genomi	100.0
2xd7_A	193	Core histone macro-H2A.2; chromosomal protein, nuc	100.0
1yd9_A	193	Core histone macro-H2A.1; alpha-beta structure, A1	100.0
2x47_A	235	Macro domain-containing protein 1; signaling prote	99.98
4abl_A	183	Poly [ADP-ribose] polymerase 14; transferase, PARP	99.97
2dx6_A	159	Hypothetical protein TTHA0132; conserved hypotheti	99.97
3kh6_A	199	Poly [ADP-ribose] polymerase 15; macro, PARP, BAL3	99.96
3gpg_A	168	NSP3, non-structural protein 3; macro domain, X do	99.96
1vhu_A	211	Hypothetical protein AF1521; structural genomics,	99.96
3gqe_A	168	Non-structural protein 3; macro domain, X domain,	99.96
3ejf_A	176	Non-structural protein 3; IBV, coronavirus, X-doma	99.95
3eti_A	168	X (ADRP) domain, macro domain of non-structural pr	99.95
1njr_A	284	32.1 kDa protein in ADH3-RCA1 intergenic region; s	99.94
4gua_A	670	Non-structural polyprotein; viral precursor polypr	99.93
2acf_A	182	Replicase polyprotein 1AB; ADRP domain, SARS NSP-3	99.92
3ejg_A	193	Non-structural protein 3; HCOV 229E, X-domain, mac	99.92
2vri_A	174	Non-structural protein 3; RNA replication, nucleot	99.89
2eee_A	149	Uncharacterized protein C6ORF130; macro domain, A1	99.84
2jyc_A	160	Uncharacterized protein C6ORF130; macro domain, A1	99.84
2fg1_A	158	Conserved hypothetical protein BT1257; structural	99.72
3sig_A	277	PArg, poly(ADP-ribose) glycohydrolase; HET: AR6; 1	99.27
3dhn_A	227	NAD-dependent epimerase/dehydratase; reductase, PF	91.28
2vg0_A	227	Short-chain Z-isoprenyl diphosphate synthetase; pe	86.51
3lgd_A	508	Adenosine deaminase CECR1; TIM barrel, dimerizatio	82.97

>3q71_A Poly [ADP-ribose] polymerase 14; structural genomics, structural genomics consortium, SGC, transferase, PARP14 macro 2; HET: AR6; 2.20A {Homo sapiens}

Probab=100.00  E-value=3.6e-34  Score=200.64  Aligned_cols=95  Identities=24%  Similarity=0.429  Sum_probs=86.0

Q ss_pred             CceeccCCCCCCceEEEecCCCcCCCC-CcHHHHHHHHHHHHHhHHhCCCcEEEecccccCCCCcChHHHHHHHHHHHHH
Q 034374            1 MLKECRGFKLPVSHVIHTVGPVFNFHC-NPEDILRSAYKNCLSVGKANNIQYIAFPAISCGVSQYPPDEAATIAISTVKE   79 (96)
Q Consensus         1 ea~~T~ag~L~~k~IiH~v~P~~~~~~-~~~~~L~~~~~~~L~~a~~~~~~SIAfPaigtG~~g~p~~~~a~~~~~~i~~   79 (96)
                      ||++|++|+|+||||||+|||.|+.+. ++.+.|++||++||++|++++++|||||+||||++|||++++|++|++++++
T Consensus       100 ~a~iT~g~~Lp~k~VIHtVgP~~~~~~~~~~~~L~~~y~~~L~~A~e~~i~SIAfPaIsTG~~G~P~~~aA~i~~~~v~~  179 (221)
T 3q71_A          100 TVLKTSSWNLDCRYVLHVVAPEWRNGSTSSLKIMEDIIRECMEITESLSLKSIAFPAIGTGNLGFPKNIFAELIISEVFK  179 (221)
T ss_dssp             CEEEEECTTSSSSEEEEECCCCCTTTCHHHHHHHHHHHHHHHHHHHHTTCCEEEEECTTSSTTCCCHHHHHHHHHHHHHH
T ss_pred             eEEEEcCCCCCCCEEEEeCCCCCcCCCchHHHHHHHHHHHHHHHHHHhCCceEeeccccCCCCCCCHHHHHHHHHHHHHH
Confidence            689999999999999999999998865 3568999999999999999999999999999999999999999999999999


Q ss_pred             HHhcC--CceEEEEEeee
Q 034374           80 FANDF--KEVSHDKFCLM   95 (96)
Q Consensus        80 ~~~~~--~~v~~Vi~~~~   95 (96)
                      |+++.  ..++.|.|++|
T Consensus       180 fl~~~~~~~l~~V~fv~f  197 (221)
T 3q71_A          180 FSSKNQLKTLQEVHFLLH  197 (221)
T ss_dssp             HHHHCCCSSCCEEEEEEC
T ss_pred             HHHHcCCCCCCEEEEEEe
Confidence            99865  34566666655

>1spv_A Putative polyprotein/phosphatase; structural genomoics, alpha/beta monomeric protein, structural genomics, PSI, protein structure initiative; HET: MES; 2.00A {Escherichia coli} SCOP: c.50.1.2

Probab=100.00  E-value=2.1e-33  Score=191.92  Aligned_cols=95  Identities=38%  Similarity=0.485  Sum_probs=87.1

Q ss_pred             CceeccCCCCCCceEEEecCCCcCCCC-CcHHHHHHHHHHHHHhHHhCCCcEEEecccccCCCCcChHHHHHHHHHHHHH
Q 034374            1 MLKECRGFKLPVSHVIHTVGPVFNFHC-NPEDILRSAYKNCLSVGKANNIQYIAFPAISCGVSQYPPDEAATIAISTVKE   79 (96)
Q Consensus         1 ea~~T~ag~L~~k~IiH~v~P~~~~~~-~~~~~L~~~~~~~L~~a~~~~~~SIAfPaigtG~~g~p~~~~a~~~~~~i~~   79 (96)
                      ||++|++|+|+||||||+|||.|+++. ++.+.|++||+++|++|++++++|||||+||||++|||++++|++|++++++
T Consensus        64 ~a~iT~~~~L~~k~VIH~vgP~~~~~~~~~~~~L~~~y~~~L~~a~~~~~~SIAfP~IstG~~g~p~~~aa~i~~~~v~~  143 (184)
T 1spv_A           64 HAVITLAGDLPAKAVVHTVGPVWRGGEQNEDQLLQDAYLNSLRLVAANSYTSVAFPAISTGVYGYPRAAAAEIAVKTVSE  143 (184)
T ss_dssp             CEEEECCTTSSSSEEEEECCCCCSSSSSSHHHHHHHHHHHHHHHHHHTTCSEEEECCTTSSTTCCCHHHHHHHHHHHHHH
T ss_pred             CEEEeeCCCCCCCEEEEEcCCcccCCCcchHHHHHHHHHHHHHHHHHhCCceEEeccccCCCCCCCHHHHHHHHHHHHHH
Confidence            689999999999999999999998765 5678999999999999999999999999999999999999999999999999


Q ss_pred             HHhcCCceEEEEEeee
Q 034374           80 FANDFKEVSHDKFCLM   95 (96)
Q Consensus        80 ~~~~~~~v~~Vi~~~~   95 (96)
                      |+++.+.++.|.|++|
T Consensus       144 ~l~~~~~~~~V~~v~~  159 (184)
T 1spv_A          144 FITRHALPEQVYFVCY  159 (184)
T ss_dssp             HHHHCCSSSEEEEEES
T ss_pred             HHHhCCCCCEEEEEEC
Confidence            9987666666666665

>3q6z_A Poly [ADP-ribose] polymerase 14; structural genomics consortium, SGC, ADP-ribose binding, TRA; HET: APR; 2.23A {Homo sapiens}

Probab=100.00  E-value=4e-33  Score=194.54  Aligned_cols=95  Identities=27%  Similarity=0.287  Sum_probs=84.9

Q ss_pred             CceeccCCCCCCceEEEecCCCcCCCC--CcHHHHHHHHHHHHHhHHhCCCcEEEecccccCCCCcChHHHHHHHHHHHH
Q 034374            1 MLKECRGFKLPVSHVIHTVGPVFNFHC--NPEDILRSAYKNCLSVGKANNIQYIAFPAISCGVSQYPPDEAATIAISTVK   78 (96)
Q Consensus         1 ea~~T~ag~L~~k~IiH~v~P~~~~~~--~~~~~L~~~~~~~L~~a~~~~~~SIAfPaigtG~~g~p~~~~a~~~~~~i~   78 (96)
                      ||++|++|+|+||||||+|||.|+.+.  ++.+.|++||+++|++|++++++|||||+||||++|||++++|++|+++++
T Consensus        98 ~a~iT~~~~L~~k~VIH~VgP~~~~~~~~~~~~~L~~~y~~~L~~A~~~~i~SIAfP~IstG~~g~P~~~aA~i~~~av~  177 (214)
T 3q6z_A           98 NATISKAGKLPYHHVIHAVGPRWSGYEAPRCVYLLRRAVQLSLCLAEKYKYRSIAIPAISSGVFGFPLGRCVETIVSAIK  177 (214)
T ss_dssp             CEEEEECTTSSSSEEEEEECCCCCGGGHHHHHHHHHHHHHHHHHHHHHTTCSEEEECCTTSSTTCCCHHHHHHHHHHHHH
T ss_pred             eEEEEcCCCCCCCEEEEecCCcccCCCcchHHHHHHHHHHHHHHHHHHcCCcEEEECcccCCCCCCCHHHHHHHHHHHHH
Confidence            689999999999999999999998765  246899999999999999999999999999999999999999999999999


Q ss_pred             HHHhcC---CceEEEEEeee
Q 034374           79 EFANDF---KEVSHDKFCLM   95 (96)
Q Consensus        79 ~~~~~~---~~v~~Vi~~~~   95 (96)
                      +|+++.   +.++.|.|++|
T Consensus       178 ~fl~~~~~~~~l~~V~fv~~  197 (214)
T 3q6z_A          178 ENFQFKKDGHCLKEIYLVDV  197 (214)
T ss_dssp             HHTSSCC--CCCCEEEEEES
T ss_pred             HHHHhcCCCCCCCEEEEEeC
Confidence            999765   34555555554

>2xd7_A Core histone macro-H2A.2; chromosomal protein, nucleosome core, chromatin regulator, nucleus, DNA-binding protein, phosphoprotein; 2.09A {Homo sapiens}

Probab=100.00  E-value=1.4e-32  Score=189.07  Aligned_cols=94  Identities=23%  Similarity=0.399  Sum_probs=84.4

Q ss_pred             CceeccCCCCCCceEEEecCCCcCCCCCcHHHHHHHHHHHHHhHHhCCCcEEEecccccCCCCcChHHHHHHHHHHHHHH
Q 034374            1 MLKECRGFKLPVSHVIHTVGPVFNFHCNPEDILRSAYKNCLSVGKANNIQYIAFPAISCGVSQYPPDEAATIAISTVKEF   80 (96)
Q Consensus         1 ea~~T~ag~L~~k~IiH~v~P~~~~~~~~~~~L~~~~~~~L~~a~~~~~~SIAfPaigtG~~g~p~~~~a~~~~~~i~~~   80 (96)
                      ||++|++|+|+||||||+|||.|+.. ++.+.|++||+++|++|++++++|||||+||||++|||++++|++|++++++|
T Consensus        83 ~a~iT~~~~L~~k~VIH~vgP~~~~~-~~~~~L~~~y~~~L~~a~~~~~~SIAfP~IstG~~g~p~~~aa~i~~~~v~~~  161 (193)
T 2xd7_A           83 EAAVSQSSGLAAKFVIHCHIPQWGSD-KCEEQLEETIKNCLSAAEDKKLKSVAFPPFPSGRNCFPKQTAAQVTLKAISAH  161 (193)
T ss_dssp             CEEEEECTTSSSSEEEEEECCCTTST-THHHHHHHHHHHHHHHHHHTTCSEEEECCCCCSTTCCCHHHHHHHHHHHHHHH
T ss_pred             CeEEeeCCCCCCCEEEEECCCcCCCc-chHHHHHHHHHHHHHHHHHcCCCEEEeccccCCCCCCCHHHHHHHHHHHHHHH
Confidence            68999999999999999999999754 67889999999999999999999999999999999999999999999999999


Q ss_pred             HhcC--CceEEEEEeee
Q 034374           81 ANDF--KEVSHDKFCLM   95 (96)
Q Consensus        81 ~~~~--~~v~~Vi~~~~   95 (96)
                      +++.  ..++.|.|++|
T Consensus       162 l~~~~~~~l~~V~fv~~  178 (193)
T 2xd7_A          162 FDDSSASSLKNVYFLLF  178 (193)
T ss_dssp             HHHCSSCCCCEEEEEEC
T ss_pred             HHhcCCCCCCEEEEEEC
Confidence            9763  24555666555

>1yd9_A Core histone macro-H2A.1; alpha-beta structure, A1PP domain, macro-domain, structural protein; 1.60A {Rattus norvegicus} SCOP: c.50.1.2 PDB: 1zr3_A* 2fxk_A 3iid_A* 3iif_A* 1zr5_A

Probab=100.00  E-value=1.9e-32  Score=188.43  Aligned_cols=94  Identities=27%  Similarity=0.488  Sum_probs=84.8

Q ss_pred             CceeccCCCCCCceEEEecCCCcCCCCCcHHHHHHHHHHHHHhHHhCCCcEEEecccccCCCCcChHHHHHHHHHHHHHH
Q 034374            1 MLKECRGFKLPVSHVIHTVGPVFNFHCNPEDILRSAYKNCLSVGKANNIQYIAFPAISCGVSQYPPDEAATIAISTVKEF   80 (96)
Q Consensus         1 ea~~T~ag~L~~k~IiH~v~P~~~~~~~~~~~L~~~~~~~L~~a~~~~~~SIAfPaigtG~~g~p~~~~a~~~~~~i~~~   80 (96)
                      ||++|++|+|+||||||+|||.|+. ..+.+.|++||+++|++|++++++|||||+||||++|||++++|++|++++++|
T Consensus        80 ~a~iT~~~~L~~k~VIH~vgP~~~~-~~~~~~L~~~y~~~L~~a~~~~~~SIAfP~IstG~~g~p~~~aa~i~~~~v~~~  158 (193)
T 1yd9_A           80 GAAVSAGHGLPAKFVIHCNSPVWGS-DKCEELLEKTVKNCLALADDRKLKSIAFPSIGSGRNGFPKQTAAQLILKAISSY  158 (193)
T ss_dssp             CEEEEECTTSSSSEEEEECCCCTTS-TTHHHHHHHHHHHHHHHHHHTTCSEEEECCCSBSTTCBCHHHHHHHHHHHHHHH
T ss_pred             CEEEecCCCCCCCEEEEeCCCCcCC-cchHHHHHHHHHHHHHHHHHhCCceEeecccccCCCCCCHHHHHHHHHHHHHHH
Confidence            6899999999999999999999964 356789999999999999999999999999999999999999999999999999


Q ss_pred             HhcC--CceEEEEEeee
Q 034374           81 ANDF--KEVSHDKFCLM   95 (96)
Q Consensus        81 ~~~~--~~v~~Vi~~~~   95 (96)
                      +++.  ..++.|.|++|
T Consensus       159 l~~~~~~~l~~V~fv~~  175 (193)
T 1yd9_A          159 FVSTMSSSIKTVYFVLF  175 (193)
T ss_dssp             HTTCTTCCCCEEEEECC
T ss_pred             HHhcCCCCcCEEEEEEC
Confidence            9763  34566666665

>2x47_A Macro domain-containing protein 1; signaling protein, signal transduction, estrogen signaling; 1.70A {Homo sapiens}

Probab=99.98  E-value=2.4e-32  Score=192.85  Aligned_cols=95  Identities=35%  Similarity=0.562  Sum_probs=85.9

Q ss_pred             CceeccCCCCCCceEEEecCCCcCCCC--CcHHHHHHHHHHHHHhHHhCCCcEEEecccccCCCCcChHHHHHHHHHHHH
Q 034374            1 MLKECRGFKLPVSHVIHTVGPVFNFHC--NPEDILRSAYKNCLSVGKANNIQYIAFPAISCGVSQYPPDEAATIAISTVK   78 (96)
Q Consensus         1 ea~~T~ag~L~~k~IiH~v~P~~~~~~--~~~~~L~~~~~~~L~~a~~~~~~SIAfPaigtG~~g~p~~~~a~~~~~~i~   78 (96)
                      ||++|++|+|+||||||+|||.|+++.  ++.+.|++||+++|++|++++++|||||+||||++|||++++|++|+++++
T Consensus       119 ~a~iT~~~~L~~k~VIH~vgP~~~~~~~~~~~~~L~~~y~~~L~~A~e~~i~SIAfP~IstG~~g~p~~~aa~i~~~~v~  198 (235)
T 2x47_A          119 KAKITGGYRLPAKYVIHTVGPIAYGEPSASQAAELRSCYLSSLDLLLEHRLRSVAFPCISTGVFGYPCEAAAEIVLATLR  198 (235)
T ss_dssp             CEEEEECTTSSSSEEEEEBCCCCTTCCCHHHHHHHHHHHHHHHHHHHHTTCCEEEECCTTCSTTSCCHHHHHHHHHHHHH
T ss_pred             ceEEecCCCCCCCEEEEecCccccCCCCcchHHHHHHHHHHHHHHHHHhCCceEEeccccCCCCCCCHHHHHHHHHHHHH
Confidence            689999999999999999999997643  467899999999999999999999999999999999999999999999999


Q ss_pred             HHHhcCCc-eEEEEEeee
Q 034374           79 EFANDFKE-VSHDKFCLM   95 (96)
Q Consensus        79 ~~~~~~~~-v~~Vi~~~~   95 (96)
                      +|++..+. ++.|+||+|
T Consensus       199 ~fl~~~~~~l~~V~fv~f  216 (235)
T 2x47_A          199 EWLEQHKDKVDRLIICVF  216 (235)
T ss_dssp             HHHHHHGGGCSEEEEEEC
T ss_pred             HHHHhCCCCCCeEEEEEC
Confidence            99986543 666777766

>4abl_A Poly [ADP-ribose] polymerase 14; transferase, PARP14; 1.15A {Homo sapiens} PDB: 4abk_A

Probab=99.97  E-value=2.8e-31  Score=181.46  Aligned_cols=86  Identities=23%  Similarity=0.319  Sum_probs=79.3

Q ss_pred             CceeccCCCCCCceEEEecCCCcCCCCCcHHHHHHHHHHHHHhHHhCCCcEEEecccccCCCCcChHHHHHHHHHHHHHH
Q 034374            1 MLKECRGFKLPVSHVIHTVGPVFNFHCNPEDILRSAYKNCLSVGKANNIQYIAFPAISCGVSQYPPDEAATIAISTVKEF   80 (96)
Q Consensus         1 ea~~T~ag~L~~k~IiH~v~P~~~~~~~~~~~L~~~~~~~L~~a~~~~~~SIAfPaigtG~~g~p~~~~a~~~~~~i~~~   80 (96)
                      ||++|++|+|+||||||+|||.|         |++||+++|++|++++++|||||+||||++|||++++|++|++++++|
T Consensus        79 ~a~iT~~~~L~~k~VIH~vgP~~---------L~~~y~~~L~~a~~~~~~SIAfP~IstG~~g~p~~~aa~i~~~~v~~f  149 (183)
T 4abl_A           79 DYIITGGGFLRCKNIIHVIGGND---------VKSSVSSVLQECEKKNYSSICLPAIGTGNAKQHPDKVAEAIIDAIEDF  149 (183)
T ss_dssp             SEEEEECTTSBSSEEEEEETTSC---------HHHHHHHHHHHHHHTTCCEEEECCTTSSTTCCCHHHHHHHHHHHHHHH
T ss_pred             ceEEecCCCCCCCEEEEeCcHHH---------HHHHHHHHHHHHHHcCCCeEeeccccCCCCCcCHHHHHHHHHHHHHHH
Confidence            68999999999999999999976         999999999999999999999999999999999999999999999999


Q ss_pred             HhcCC--ceEEEEEeee
Q 034374           81 ANDFK--EVSHDKFCLM   95 (96)
Q Consensus        81 ~~~~~--~v~~Vi~~~~   95 (96)
                      +++.+  .++.|.|++|
T Consensus       150 l~~~~~~~l~~V~fv~f  166 (183)
T 4abl_A          150 VQKGSAQSVKKVKVVIF  166 (183)
T ss_dssp             HHTTCCSSCCEEEEEES
T ss_pred             HHhcCCCCCCEEEEEEC
Confidence            98753  5666666665

>2dx6_A Hypothetical protein TTHA0132; conserved hypothetical protein, structural genomics, NPPSFA; 1.78A {Thermus thermophilus} PDB: 3v45_A

Probab=99.97  E-value=1.5e-30  Score=173.86  Aligned_cols=89  Identities=24%  Similarity=0.271  Sum_probs=81.7

Q ss_pred             CceeccCCCCCCceEEEecCCCcCCCCCcHHHHHHHHHHHHHhHHhCCCcEEEecccccCCCCcChHHHHHHHHHHHHHH
Q 034374            1 MLKECRGFKLPVSHVIHTVGPVFNFHCNPEDILRSAYKNCLSVGKANNIQYIAFPAISCGVSQYPPDEAATIAISTVKEF   80 (96)
Q Consensus         1 ea~~T~ag~L~~k~IiH~v~P~~~~~~~~~~~L~~~~~~~L~~a~~~~~~SIAfPaigtG~~g~p~~~~a~~~~~~i~~~   80 (96)
                      |+++|++|+|+||||||++||.|+  ..+.+.|++||+++|++|++++++|||||+||||++|||+++++++|++++++|
T Consensus        59 ~a~it~~~~L~~~~Vih~vgp~~~--~~~~~~L~~~~~~~L~~a~~~~~~sIa~P~igtG~~g~p~~~~a~i~~~~~~~~  136 (159)
T 2dx6_A           59 EAAVTGAGNLPVRYVIHAAVLGDE--PASLETVRKATKSALEKAVELGLKTVAFPLLGTGVGGLPVEAVARVMLEEIKKA  136 (159)
T ss_dssp             CEEEEECTTSSSSEEEEEEEESSS--CCCHHHHHHHHHHHHHHHHHTTCSEEEECCTTSSTTCCCHHHHHHHHHHHHTTS
T ss_pred             cEEEecCCCCCCCEEEEEeCCCCC--CchHHHHHHHHHHHHHHHHHcCCcEEEECCccCCCCCCCHHHHHHHHHHHHHhc
Confidence            689999999999999999999997  346889999999999999999999999999999999999999999999999999


Q ss_pred             HhcCCceEEEEE
Q 034374           81 ANDFKEVSHDKF   92 (96)
Q Consensus        81 ~~~~~~v~~Vi~   92 (96)
                       +++++|++|+|
T Consensus       137 -~~~~~V~~v~~  147 (159)
T 2dx6_A          137 -PDTLEVTLYGY  147 (159)
T ss_dssp             -CTTCEEEEEES
T ss_pred             -CCCCEEEEEEC
Confidence             55566666665

>3gpg_A NSP3, non-structural protein 3; macro domain, X domain, alphavirus, VIZI enzymes involved in replication, ATP-binding, cell membrane endosome; 1.65A {Chikungunya virus} PDB: 3gpo_A* 3gpq_A

Probab=99.96  E-value=2.5e-30  Score=174.75  Aligned_cols=88  Identities=20%  Similarity=0.180  Sum_probs=76.3

Q ss_pred             CceeccCCCCCCceEEEecCCCcCCCC--CcHHHHHHHHHHHHHhHHhCCCcEEEecccccCCCCcChHHHHHHHHHHHH
Q 034374            1 MLKECRGFKLPVSHVIHTVGPVFNFHC--NPEDILRSAYKNCLSVGKANNIQYIAFPAISCGVSQYPPDEAATIAISTVK   78 (96)
Q Consensus         1 ea~~T~ag~L~~k~IiH~v~P~~~~~~--~~~~~L~~~~~~~L~~a~~~~~~SIAfPaigtG~~g~p~~~~a~~~~~~i~   78 (96)
                      ||++|+++   ||||||+|||.|+++.  ++.++|++||+++|++|++++++|||||+||||++|||++++|+ ++++++
T Consensus        62 ~a~iT~~~---~k~VIHtVGP~~~~~~~~~~~~~L~~~y~~~L~~A~~~~~~SIAfP~IstGi~g~P~~~aa~-ai~~v~  137 (168)
T 3gpg_A           62 TAKTVMCG---TYPVIHAVGPNFSNYSESEGDRELAAAYREVAKEVTRLGVNSVAIPLLSTGVYSGGKDRLTQ-SLNHLF  137 (168)
T ss_dssp             CEEEEEET---TEEEEEECCCCTTTSCHHHHHHHHHHHHHHHHHHHHHHTCSEEEEECTTSSTTSTTSCCHHH-HC-CHH
T ss_pred             CEEEecCC---CCEEEEeCCCCcCCCCcchHHHHHHHHHHHHHHHHHHhCCcEEEECccccCCCCCCHHHHHH-HHHHHH
Confidence            68899995   9999999999998876  23579999999999999999999999999999999999999999 889999


Q ss_pred             HHHhc-CCceEEEEE
Q 034374           79 EFAND-FKEVSHDKF   92 (96)
Q Consensus        79 ~~~~~-~~~v~~Vi~   92 (96)
                      +|+++ +.+|.+|+|
T Consensus       138 ~~~~~~~~~V~fv~f  152 (168)
T 3gpg_A          138 TAMDSTDADVVIYCR  152 (168)
T ss_dssp             HHHTTCCSEEEEEES
T ss_pred             HhccCCCCEEEEEEC
Confidence            99876 345555544

>1vhu_A Hypothetical protein AF1521; structural genomics, unknown function; HET: MSE MES; 1.34A {Archaeoglobus fulgidus} SCOP: c.50.1.2 PDB: 2bfq_A* 1hjz_A* 2bfr_A*

Probab=99.96  E-value=9.2e-30  Score=177.11  Aligned_cols=91  Identities=23%  Similarity=0.347  Sum_probs=82.2

Q ss_pred             CceeccCCCCCC---ceEEEecCC----CcCCCCCcHHHHHHHHHHHHHhHHhCCCcEEEecccccCCCCcChHHHHHHH
Q 034374            1 MLKECRGFKLPV---SHVIHTVGP----VFNFHCNPEDILRSAYKNCLSVGKANNIQYIAFPAISCGVSQYPPDEAATIA   73 (96)
Q Consensus         1 ea~~T~ag~L~~---k~IiH~v~P----~~~~~~~~~~~L~~~~~~~L~~a~~~~~~SIAfPaigtG~~g~p~~~~a~~~   73 (96)
                      ||++|++|+|+|   |||||+|||    .|++  ++.+.|++||+++|++|++++++|||||+||||++|||++++|++|
T Consensus        88 ~a~iT~~~~L~~~g~k~VIH~vgP~~~~~~~~--~~~~~L~~~y~~~L~~A~~~~i~SIAfP~IstG~~G~p~~~aa~i~  165 (211)
T 1vhu_A           88 EVVVTPAMNLEERGIKYVFHTVGPICSGMWSE--ELKEKLYKAFLGPLEKAEEMGVESIAFPAVSAGIYGCDLEKVVETF  165 (211)
T ss_dssp             CCEEEECGGGGGGTCCEEEEEECCCCTTCCCH--HHHHHHHHHHHHHHHHHHHHTCCEEEECCTTSSTTCCCHHHHHHHH
T ss_pred             cEEEEECCCCCccCcCEEEEecCCccccccCc--chHHHHHHHHHHHHHHHHHcCCCEEEeccccCCCCCCCHHHHHHHH
Confidence            689999999999   999999999    9953  5678999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhcCCceEEEEEeee
Q 034374           74 ISTVKEFANDFKEVSHDKFCLM   95 (96)
Q Consensus        74 ~~~i~~~~~~~~~v~~Vi~~~~   95 (96)
                      ++++++|++ .+ ++.|.|++|
T Consensus       166 ~~~v~~~l~-~~-l~~V~~v~~  185 (211)
T 1vhu_A          166 LEAVKNFKG-SA-VKEVALVIY  185 (211)
T ss_dssp             HHHHHHCCC-SS-CCEEEEEES
T ss_pred             HHHHHHHHh-CC-CCEEEEEEC
Confidence            999999994 33 556666665

>3gqe_A Non-structural protein 3; macro domain, X domain, venezuelan equine encephalitis virus alphavirus; HET: BCN; 2.30A {Venezuelan equine encephalitis virus} PDB: 3gqo_A*

Probab=99.96  E-value=3.9e-29  Score=168.92  Aligned_cols=90  Identities=22%  Similarity=0.278  Sum_probs=76.7

Q ss_pred             CceeccCCCCCCceEEEecCCCcCCCC--CcHHHHHHHHHHHHHhHHhCCCcEEEecccccCCCCcChHHHHHHHHHHHH
Q 034374            1 MLKECRGFKLPVSHVIHTVGPVFNFHC--NPEDILRSAYKNCLSVGKANNIQYIAFPAISCGVSQYPPDEAATIAISTVK   78 (96)
Q Consensus         1 ea~~T~ag~L~~k~IiH~v~P~~~~~~--~~~~~L~~~~~~~L~~a~~~~~~SIAfPaigtG~~g~p~~~~a~~~~~~i~   78 (96)
                      +|++|+++   ||||||+|||.|+++.  ++.++|++||+++|++|++++++|||||+||||++|||++++|+.+.+.+.
T Consensus        56 ~a~iT~~~---~k~VIH~VgP~~~~~~~~~~~~~L~~~y~~~L~~a~~~~~~SIAfP~IstG~~g~p~~~aa~~i~~~l~  132 (168)
T 3gqe_A           56 KARLVKGA---AKHIIHAVGPNFNKVSEVEGDKQLAEAYESIAKIVNDNNYKSVAIPLLSTGIFSGNKDRLTQSLNHLLT  132 (168)
T ss_dssp             CEEEECCT---TCCEEEEECCCTTTSCHHHHHHHHHHHHHHHHHHHHHTTCSEEEEECTTSSTTSCSSCCHHHHHHHHHH
T ss_pred             cEEEEcCC---CCEEEEcCCCccCCCCchhHHHHHHHHHHHHHHHHHHcCCCEEEECCcccCCCCCCHHHHHHHHHHHHH
Confidence            58899984   9999999999999875  235799999999999999999999999999999999999999997766665


Q ss_pred             HHHhcCCceEEEEEe
Q 034374           79 EFANDFKEVSHDKFC   93 (96)
Q Consensus        79 ~~~~~~~~v~~Vi~~   93 (96)
                      .+-++..+|.+|+|+
T Consensus       133 ~~~~~~~~V~iv~fd  147 (168)
T 3gqe_A          133 ALDTTDADVAIYCRD  147 (168)
T ss_dssp             HHTTSCCEEEEEESC
T ss_pred             HCCCCCCeEEEEEcC
Confidence            554555667776654

>3ejf_A Non-structural protein 3; IBV, coronavirus, X-domain, macro domain, NSP3, ADRP, hydrolase, ribosomal frameshifting; 1.60A {Avian infectious bronchitis virus} PDB: 3eke_A* 3ewo_A 3ewp_A*

Probab=99.95  E-value=5.8e-28  Score=164.18  Aligned_cols=82  Identities=20%  Similarity=0.187  Sum_probs=75.4

Q ss_pred             ceeccCCCCCCceEEEecCCCcCCCCCcHHHHHHHHHHHHHhHHhCCCcEEEecccccCCCCcChHHHHHHHHHHHHHHH
Q 034374            2 LKECRGFKLPVSHVIHTVGPVFNFHCNPEDILRSAYKNCLSVGKANNIQYIAFPAISCGVSQYPPDEAATIAISTVKEFA   81 (96)
Q Consensus         2 a~~T~ag~L~~k~IiH~v~P~~~~~~~~~~~L~~~~~~~L~~a~~~~~~SIAfPaigtG~~g~p~~~~a~~~~~~i~~~~   81 (96)
                      |++|+|++|++++|||+|||.|... +++++|++||+++|+    ++++|||||+||||++|||++++|++|++++++  
T Consensus        81 a~iT~G~~l~t~~VIHtVGP~~~~~-~~~~~L~~~y~~~L~----~~~~SIAfPaIstGi~g~P~~~aA~ia~~~v~~--  153 (176)
T 3ejf_A           81 RLVTPSFVKGIQCVNNVVGPRHGDN-NLHEKLVAAYKNVLV----DGVVNYVVPVLSLGIFGVDFKMSIDAMREAFEG--  153 (176)
T ss_dssp             EEEECCCSTTEEEEEEECCCCTTCS-CHHHHHHHHHHTTCC----TTCCEEEEECCCTTSTTCCHHHHHHHHHHHHTT--
T ss_pred             eeecccccccCCEEEEeCCCCCCCc-cHHHHHHHHHHHHHH----cCCcEEEECccccCCCCCCHHHHHHHHHHHhhh--
Confidence            6899999999999999999999643 577899999999998    999999999999999999999999999999983  


Q ss_pred             hcCCceEEEEEe
Q 034374           82 NDFKEVSHDKFC   93 (96)
Q Consensus        82 ~~~~~v~~Vi~~   93 (96)
                         .++++++|+
T Consensus       154 ---~~v~v~~~~  162 (176)
T 3ejf_A          154 ---CTIRVLLFS  162 (176)
T ss_dssp             ---CCCEEEEEE
T ss_pred             ---cceEEEEEc
Confidence               568888886

>3eti_A X (ADRP) domain, macro domain of non-structural protein 3; coronavirus, X domain, RNA binding protein; 2.20A {Feline infectious peritonitis virus} PDB: 3ew5_A* 3jzt_A*

Probab=99.95  E-value=1.8e-28  Score=165.62  Aligned_cols=81  Identities=20%  Similarity=0.184  Sum_probs=72.0

Q ss_pred             CceeccCCCCCCceEEEecCCCcCCCCCcHHHHHHHHHHHHHhHHhCCCcEEEecccccCCCCcChHHHHHHHHHHHHHH
Q 034374            1 MLKECRGFKLPVSHVIHTVGPVFNFHCNPEDILRSAYKNCLSVGKANNIQYIAFPAISCGVSQYPPDEAATIAISTVKEF   80 (96)
Q Consensus         1 ea~~T~ag~L~~k~IiH~v~P~~~~~~~~~~~L~~~~~~~L~~a~~~~~~SIAfPaigtG~~g~p~~~~a~~~~~~i~~~   80 (96)
                      ||++|+|| |+|+||||+|||.|.. .++.++|++||+++|++     .+|||||+||||++|||++++|++|++++++ 
T Consensus        75 ~a~iT~g~-l~~~~VIHtVgP~~~~-~~~~~~L~~~y~~~L~~-----~~SIAfP~IstG~~g~P~~~aa~i~~~~v~~-  146 (168)
T 3eti_A           75 NAVLFENV-LEHLSVMNAVGPRNGD-SRVEGKLCNVYKAIAKC-----DGKILTPLISVGIFKVKLEVSLQCLLKTVTD-  146 (168)
T ss_dssp             EEEEEEEE-ETTEEEEEEECCCTTS-TTHHHHHHHHHHHHHTS-----CSCEEECCTTBSTTCBCHHHHHHHHHHHCCS-
T ss_pred             CEEEecCC-CCccEEEEecCCCCCc-chHHHHHHHHHHHHHHh-----cCceeecccccCCCCCCHHHHHHHHHHHHhc-
Confidence            58899999 9999999999999965 35688999999999985     3899999999999999999999999999987 


Q ss_pred             HhcCCceEEEEEe
Q 034374           81 ANDFKEVSHDKFC   93 (96)
Q Consensus        81 ~~~~~~v~~Vi~~   93 (96)
                          ++|++|+|.
T Consensus       147 ----~~V~~v~f~  155 (168)
T 3eti_A          147 ----RDLNVFVYT  155 (168)
T ss_dssp             ----SCEEEEECC
T ss_pred             ----CeEEEEEcC
Confidence                566666653

>1njr_A 32.1 kDa protein in ADH3-RCA1 intergenic region; structural genomics, dimer, two domain organization, PSI, PR structure initiative; HET: XYL; 1.90A {Saccharomyces cerevisiae} SCOP: c.50.1.2 PDB: 1txz_A* 1ty8_A*

Probab=99.94  E-value=9.4e-29  Score=178.46  Aligned_cols=94  Identities=13%  Similarity=0.065  Sum_probs=82.0

Q ss_pred             CceeccCC----------CCCCceEEEecCCCcCCCC---------CcHHHHHHHHHHHHHhHHhCCCcEEEecccccCC
Q 034374            1 MLKECRGF----------KLPVSHVIHTVGPVFNFHC---------NPEDILRSAYKNCLSVGKANNIQYIAFPAISCGV   61 (96)
Q Consensus         1 ea~~T~ag----------~L~~k~IiH~v~P~~~~~~---------~~~~~L~~~~~~~L~~a~~~~~~SIAfPaigtG~   61 (96)
                      +|++|++|          +|+||||||+|||.|.++.         .+.+.|++||+++|++| +++++|||||+||||+
T Consensus       119 ~a~iT~~~~~~~~~~~~~~L~~k~VIHtvgp~~~~~~~~d~~~p~~~~~~~L~~~~~~~L~~a-e~~i~SIAfPaIsTGv  197 (284)
T 1njr_A          119 SATVVDLQRCLEEKTIECRDGIRYIIHVPTVVAPSAPIFNPQNPLKTGFEPVFNAMWNALMHS-PKDIDGLIIPGLCTGY  197 (284)
T ss_dssp             CCEEEEGGGGGCC----CCTTEEEEEECCCBSCSSSCSCCTTCHHHHTHHHHHHHHHHHHHTS-CTTCSEEEECCTTCST
T ss_pred             eEEEEECCcccccccchhcCCCCEEEEeCCCccCCCCCcccccccccHHHHHHHHHHHHHHHH-HhCCCEEEECcccccC
Confidence            68899999          9999999999999998652         14589999999999999 9999999999999999


Q ss_pred             CCcChHHHHHHHHHHHHHHHhcCC---ce-EEEEEeee
Q 034374           62 SQYPPDEAATIAISTVKEFANDFK---EV-SHDKFCLM   95 (96)
Q Consensus        62 ~g~p~~~~a~~~~~~i~~~~~~~~---~v-~~Vi~~~~   95 (96)
                      +|||++++|++|++++++|+++.+   .+ +.|+||+|
T Consensus       198 ~G~P~~~aA~i~~~av~~f~~~~~~s~~~~~~vi~~~~  235 (284)
T 1njr_A          198 AGVPPIISCKSMAFALRLYMAGDHISKELKNVLIMYYL  235 (284)
T ss_dssp             TCCCHHHHHHHHHHHHHHHHTGGGSCHHHHHHHHHHHT
T ss_pred             CCCCHHHHHHHHHHHHHHHHHhCCcccccceEEEEEEC
Confidence            999999999999999999998654   32 44555543

>4gua_A Non-structural polyprotein; viral precursor polyprotein, protease, zinc-binding, hydrola; HET: MES; 2.85A {Sindbis virus}

Probab=99.93  E-value=2.1e-26  Score=177.31  Aligned_cols=89  Identities=21%  Similarity=0.310  Sum_probs=78.9

Q ss_pred             CceeccCCCCCCceEEEecCCCcCCCCC-c-HHHHHHHHHHHHHhHHhCCCcEEEecccccCCCCcChHHHHHHHHHHHH
Q 034374            1 MLKECRGFKLPVSHVIHTVGPVFNFHCN-P-EDILRSAYKNCLSVGKANNIQYIAFPAISCGVSQYPPDEAATIAISTVK   78 (96)
Q Consensus         1 ea~~T~ag~L~~k~IiH~v~P~~~~~~~-~-~~~L~~~~~~~L~~a~~~~~~SIAfPaigtG~~g~p~~~~a~~~~~~i~   78 (96)
                      ||++|+++   +|||||+|||.|+++.+ + .++|++||+++|++|.+++++|||||+||||+||||++ .++++++++.
T Consensus       396 ~AkIT~g~---aKyIIHtVGPvw~~g~~~E~~~lLascYrnsLkLA~e~~~kSIAFPLISTGIYG~PKd-al~IAl~~I~  471 (670)
T 4gua_A          396 TARMTVCL---GKKVIHAVGPDFRKHPEAEALKLLQNAYHAVADLVNEHNIKSVAIPLLSTGIYAAGKD-RLEVSLNCLT  471 (670)
T ss_dssp             CEEEEEET---TEEEEEECCCCTTSSCHHHHHHHHHHHHHHHHHHHHHTTCSEEEECCTTSSSTTTTSC-CHHHHHHHHH
T ss_pred             eEEEecCC---CceEEEcCCCCccCCCCchHHHHHHHHHHHHHHHHHHcCCcEEEEccccccCCCCCHH-HHHHHHHHHH
Confidence            68999998   59999999999998873 3 36899999999999999999999999999999999987 5899999999


Q ss_pred             HHHhcCC-ceEEEEEe
Q 034374           79 EFANDFK-EVSHDKFC   93 (96)
Q Consensus        79 ~~~~~~~-~v~~Vi~~   93 (96)
                      +|+++.. +|.+|.|+
T Consensus       472 ~fL~~~D~dV~IvcfD  487 (670)
T 4gua_A          472 TALDRTDADVTIYCLD  487 (670)
T ss_dssp             HHHTTSSCEEEEECSC
T ss_pred             HHHhccCCEEEEEEec
Confidence            9998764 56666553

>2acf_A Replicase polyprotein 1AB; ADRP domain, SARS NSP-3, APPR-1-P phosphatase, structural GE joint center for structural genomics, JCSG; 1.40A {Sars coronavirus TOR2} SCOP: c.50.1.2 PDB: 2fav_A*

Probab=99.92  E-value=7.6e-26  Score=154.43  Aligned_cols=78  Identities=24%  Similarity=0.356  Sum_probs=68.4

Q ss_pred             CceeccCCCCCCceEEEecCCCcCCCCCcHHHHHHHHHHHHHhHHhCCCcEEEecccccCCCCcChHHHHHHHHHHHHHH
Q 034374            1 MLKECRGFKLPVSHVIHTVGPVFNFHCNPEDILRSAYKNCLSVGKANNIQYIAFPAISCGVSQYPPDEAATIAISTVKEF   80 (96)
Q Consensus         1 ea~~T~ag~L~~k~IiH~v~P~~~~~~~~~~~L~~~~~~~L~~a~~~~~~SIAfPaigtG~~g~p~~~~a~~~~~~i~~~   80 (96)
                      ||++|++|+|+ +||||+|||.|+.+ ++.+.|++||+++      ++++|||||+||||++|||++++|+++++++++ 
T Consensus        85 ~a~iT~~~~L~-~~VIH~vgP~~~~~-~~~~~L~~~y~~~------~~~~SIAfP~IstGi~G~p~~~aa~i~~~~v~~-  155 (182)
T 2acf_A           85 GSCLLSGHNLA-KKCLHVVGPNLNAG-EDIQLLKAAYENF------NSQDILLAPLLSAGIFGAKPLQSLQVCVQTVRT-  155 (182)
T ss_dssp             CEEEEECTTTC-SEEEEECCCCGGGT-CCTTHHHHHHHGG------GGSSEEEECCTTCGGGCCCHHHHHHHHHHHCCS-
T ss_pred             cEEEeeCCCCC-ceEEEECCCCCCCC-chHHHHHHHHHHh------cCCCEEEECCcccCCCCCCHHHHHHHHHHHHhC-
Confidence            68999999996 89999999999765 3567999999985      799999999999999999999999999999886 


Q ss_pred             HhcCCceEEEEE
Q 034374           81 ANDFKEVSHDKF   92 (96)
Q Consensus        81 ~~~~~~v~~Vi~   92 (96)
                           +|++|+|
T Consensus       156 -----~V~~v~~  162 (182)
T 2acf_A          156 -----QVYIAVN  162 (182)
T ss_dssp             -----EEEEEES
T ss_pred             -----cEEEEEC
Confidence                 5555544

>3ejg_A Non-structural protein 3; HCOV 229E, X-domain, macro domain, NSP3, ADRP, hydrolase, ribosomal frameshifting, RNA-binding; 1.78A {Human coronavirus 229E} PDB: 3ewr_A* 3ewq_A*

Probab=99.92  E-value=1.5e-25  Score=154.14  Aligned_cols=77  Identities=19%  Similarity=0.225  Sum_probs=68.5

Q ss_pred             CceeccCCCCCCceEEEecCCCcCCCCCcHHHHHHHHHHHHHhHHhCCCcEEEecccccCCCCcChHHHHHHHHHHHHHH
Q 034374            1 MLKECRGFKLPVSHVIHTVGPVFNFHCNPEDILRSAYKNCLSVGKANNIQYIAFPAISCGVSQYPPDEAATIAISTVKEF   80 (96)
Q Consensus         1 ea~~T~ag~L~~k~IiH~v~P~~~~~~~~~~~L~~~~~~~L~~a~~~~~~SIAfPaigtG~~g~p~~~~a~~~~~~i~~~   80 (96)
                      ||++|++|+|   ||||+|||.|+.  ++.++|++||+++|+.     .+|||||+||||++|||++++|+++++++++ 
T Consensus       103 ~a~iT~~~~L---~VIHtVGP~~~~--~~~~~L~~~y~~~L~~-----~~SIAfPaIstGi~G~P~~~aa~ial~~v~~-  171 (193)
T 3ejg_A          103 TGVMVECDSL---RIFNVVGPRKGK--HERDLLIKAYNTINNE-----QGTPLTPILSCGIFGIKLETSLEVLLDVCNT-  171 (193)
T ss_dssp             CEEEEEETTE---EEEEEECCCSST--THHHHHHHHHHHHHHS-----SSCEEECCTTCGGGCCCHHHHHHHHHHHCCS-
T ss_pred             CEEEecCCCe---eEEEecCCCCCc--hHHHHHHHHHHHHHHh-----cCceeecccccCCCCCCHHHHHHHHHHHHhc-
Confidence            6899999999   999999999965  5788999999999984     2799999999999999999999999999988 


Q ss_pred             HhcCCceEEEEE
Q 034374           81 ANDFKEVSHDKF   92 (96)
Q Consensus        81 ~~~~~~v~~Vi~   92 (96)
                          .+|++|+|
T Consensus       172 ----~~V~fv~f  179 (193)
T 3ejg_A          172 ----KEVKVFVY  179 (193)
T ss_dssp             ----SCEEEEEC
T ss_pred             ----CeEEEEEc
Confidence                35666655

>2vri_A Non-structural protein 3; RNA replication, nucleotide-binding, endonuclease, macro domain, viral protein, ATP-binding, exonuclease; 1.8A {Human coronavirus NL63}

Probab=99.89  E-value=4.5e-24  Score=144.65  Aligned_cols=78  Identities=22%  Similarity=0.233  Sum_probs=68.4

Q ss_pred             CceeccCCCCCCceEEEecCCCcCCCCCcHHHHHHHHHHHHHhHHhCCCcEEEecccccCCCCcChHHHHHHHHHHHHHH
Q 034374            1 MLKECRGFKLPVSHVIHTVGPVFNFHCNPEDILRSAYKNCLSVGKANNIQYIAFPAISCGVSQYPPDEAATIAISTVKEF   80 (96)
Q Consensus         1 ea~~T~ag~L~~k~IiH~v~P~~~~~~~~~~~L~~~~~~~L~~a~~~~~~SIAfPaigtG~~g~p~~~~a~~~~~~i~~~   80 (96)
                      ||++|++|+|   ||||+|||.|...  +.+.|++||+++|++   +  +|||||+||||++|||++++|+++++++++ 
T Consensus        82 ~a~iT~~~~l---~VIH~vgP~~~~~--~~~~L~~~y~~~L~~---~--~SIAfP~IstG~~g~p~~~aa~i~~~~v~~-  150 (174)
T 2vri_A           82 AGVMLECEKF---NVFNVVGPRTGKH--EHSLLVEAYNSILFE---N--GIPLMPLLSCGIFGVRIENSLKALFSCDIN-  150 (174)
T ss_dssp             CEEEEECSSC---EEEEEECCCSSTT--HHHHHHHHHHHHHHS---S--SCEEEECSSCGGGCCCHHHHHHHHHTSCCC-
T ss_pred             eEEEEECCCC---EEEEEcCCCCCcc--hHHHHHHHHHHHHhh---C--CcEEeCccccCCCCCCHHHHHHHHHHHHhh-
Confidence            6899999998   9999999999642  778999999999985   3  499999999999999999999999998876 


Q ss_pred             HhcCCceEEEEEe
Q 034374           81 ANDFKEVSHDKFC   93 (96)
Q Consensus        81 ~~~~~~v~~Vi~~   93 (96)
                          ++|++|+|+
T Consensus       151 ----~~V~~v~f~  159 (174)
T 2vri_A          151 ----KPLQVFVYS  159 (174)
T ss_dssp             ----SCEEEEECS
T ss_pred             ----CcEEEEEcC
Confidence                567777663

>2eee_A Uncharacterized protein C6ORF130; macro domain, A1PP domain, ADP-ribose binding, rossmann fold, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l8r_A*

Probab=99.84  E-value=8.9e-21  Score=125.39  Aligned_cols=84  Identities=8%  Similarity=0.118  Sum_probs=72.9

Q ss_pred             CceeccCCCCCCceEEEecCCC-cCCCCCcHHHHHHHHHHHHHhHHhCCCcEEEecccccCCCCcChHHHHHHHHHHHHH
Q 034374            1 MLKECRGFKLPVSHVIHTVGPV-FNFHCNPEDILRSAYKNCLSVGKANNIQYIAFPAISCGVSQYPPDEAATIAISTVKE   79 (96)
Q Consensus         1 ea~~T~ag~L~~k~IiH~v~P~-~~~~~~~~~~L~~~~~~~L~~a~~~~~~SIAfPaigtG~~g~p~~~~a~~~~~~i~~   79 (96)
                      |+++|+++   ++||||++||. |.+ ..+.+.|++||++++++|++++++|||||+||||++|+|.+++++++.+++.+
T Consensus        64 ~a~it~~~---~~~Vih~v~~~~~~~-~~~~~~l~~~l~~~l~~a~~~~~~sIa~P~IgtG~~G~~~~~v~~ii~~~~~~  139 (149)
T 2eee_A           64 EVAVLKRD---GRYIYYLITKKRASH-KPTYENLQKSLEAMKSHCLKNGVTDLSMPRIGCGLDRLQWENVSAMIEEVFEA  139 (149)
T ss_dssp             CEEEEESS---SSEEEEEEEESSTTS-CCCHHHHHHHHHHHHHHHHHHTCCEEECCCCCCTTTTCCHHHHHHHHHHHHTT
T ss_pred             cEEEEEcC---CCEEEEEEecCCCCC-CCCHHHHHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCHHHHHHHHHHHhcc
Confidence            57788885   69999999998 654 45678999999999999999999999999999999999999999998776553


Q ss_pred             HHhcCCceEEEEEe
Q 034374           80 FANDFKEVSHDKFC   93 (96)
Q Consensus        80 ~~~~~~~v~~Vi~~   93 (96)
                           .++.+++|+
T Consensus       140 -----~~i~v~Vy~  148 (149)
T 2eee_A          140 -----TDIKITVYT  148 (149)
T ss_dssp             -----CCCEEEEEC
T ss_pred             -----CCceEEEEe
Confidence                 258888885

>2fg1_A Conserved hypothetical protein BT1257; structural genomics, PSI, PROT structure initiative; HET: MSE; 1.25A {Bacteroides thetaiotaomicron} SCOP: c.50.1.2 PDB: 2afc_A

Probab=99.72  E-value=2.3e-17  Score=109.78  Aligned_cols=85  Identities=14%  Similarity=0.110  Sum_probs=68.4

Q ss_pred             CceeccCCCCCCceEEEecCCC-cCCCC-C----cHHHHHHHHHHHHHhHHhCCCcEEEecccccCCCCcChHHHHHHHH
Q 034374            1 MLKECRGFKLPVSHVIHTVGPV-FNFHC-N----PEDILRSAYKNCLSVGKANNIQYIAFPAISCGVSQYPPDEAATIAI   74 (96)
Q Consensus         1 ea~~T~ag~L~~k~IiH~v~P~-~~~~~-~----~~~~L~~~~~~~L~~a~~~~~~SIAfPaigtG~~g~p~~~~a~~~~   74 (96)
                      |+.+|+++  +.+||||++||. |.++. .    +.+.|++||+++++.|++++. |||||.||||++|+|.+++++++.
T Consensus        67 ~~~i~~~~--~~~~Vi~~v~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~a~~~~~-sIa~P~Ig~G~~G~~w~~v~~ii~  143 (158)
T 2fg1_A           67 AVQFVNVE--NKLYVANMIGQHGIYKDSKGLPPIRYDAVRQCLKEVALFTIAHKA-SVHMPRIGCGLAGGKWELMEQIIK  143 (158)
T ss_dssp             CEEEEEEE--TTEEEEEEEEESSSSCCTTCCCSBCHHHHHHHHHHHHHHHHHHTC-EEEECCTTCSTTCCCHHHHHHHHH
T ss_pred             cEEEEecC--CCeEEEEEEEEcccCCCCCCCccccHHHHHHHHHHHHHHHHHhCC-eEEecCcCCCCCCCCHHHHHHHHH
Confidence            57788873  239999999998 76443 2    688999999999999999997 999999999999999999998775


Q ss_pred             HHHHHHHhcCCceEEEEEe
Q 034374           75 STVKEFANDFKEVSHDKFC   93 (96)
Q Consensus        75 ~~i~~~~~~~~~v~~Vi~~   93 (96)
                      +.+    .++ ++.+++|.
T Consensus       144 ~~l----~~~-~i~v~vy~  157 (158)
T 2fg1_A          144 EEL----ITK-EIAVTVYD  157 (158)
T ss_dssp             HHT----GGG-TCCEEEEE
T ss_pred             HHh----ccC-CcEEEEec
Confidence            544    433 55666653

>3sig_A PArg, poly(ADP-ribose) glycohydrolase; HET: AR6; 1.28A {Thermomonospora curvata} PDB: 3sih_A 3sii_A* 3sij_A

Probab=99.27  E-value=8.4e-12  Score=89.68  Aligned_cols=78  Identities=18%  Similarity=0.267  Sum_probs=64.6

Q ss_pred             EEEecCCCcCCCC------CcHHHHHHHHHHHHHhHHhCCCcEEEecccccCCCCcChHHHHHHHHHHHHH---HHhcCC
Q 034374           15 VIHTVGPVFNFHC------NPEDILRSAYKNCLSVGKANNIQYIAFPAISCGVSQYPPDEAATIAISTVKE---FANDFK   85 (96)
Q Consensus        15 IiH~v~P~~~~~~------~~~~~L~~~~~~~L~~a~~~~~~SIAfPaigtG~~g~p~~~~a~~~~~~i~~---~~~~~~   85 (96)
                      ||.++.|+|....      +..+.|++.++++|..|.++|.++|++||+|||+||+|++++|+++.+.+.+   |...++
T Consensus       172 vit~aApn~~~~~~~~~~~~~~~~l~~rir~vL~iA~~~g~~~LVLGA~GCGvfgnpp~~VA~~~~~vL~~~~~f~~~f~  251 (277)
T 3sig_A          172 FLTSPAPNRRAIGDLRTVEEIGRVLRGRAAKVLAAARHHGHRRLVLGAWGCGVFGNDPAQVAETFAGLLLDGGPFAGRFA  251 (277)
T ss_dssp             EEEECCCCHHHHGGGSCHHHHHHHHHHHHHHHHHHHHHTTCCEEEECCTTSSTTCCCHHHHHHHHHHHHSTTCTTTTTCS
T ss_pred             EEEecCCCCccccCccchHHHHHHHHHHHHHHHHHHHHcCCCEEEECCcccCcCCCCHHHHHHHHHHHHhhcchhcCCce
Confidence            8899999884211      2357899999999999999999999999999999999999999999999984   555555


Q ss_pred             ceEEEEE
Q 034374           86 EVSHDKF   92 (96)
Q Consensus        86 ~v~~Vi~   92 (96)
                      +|.|.++
T Consensus       252 ~VvFAv~  258 (277)
T 3sig_A          252 HVVFAVW  258 (277)
T ss_dssp             EEEEECC
T ss_pred             EEEEEEe
Confidence            5555554

>3dhn_A NAD-dependent epimerase/dehydratase; reductase, PF01370, Q89Z24_bactn, NESG, BTR310, structural genomics, PSI-2; 2.00A {Bacteroides thetaiotaomicron}

Probab=91.28  E-value=1.7  Score=28.24  Aligned_cols=43  Identities=16%  Similarity=0.095  Sum_probs=26.2

Q ss_pred             CceEEEecCCCcCCCCCcHHHHHHHHHHHHHhHHhCCCcEEEec
Q 034374           12 VSHVIHTVGPVFNFHCNPEDILRSAYKNCLSVGKANNIQYIAFP   55 (96)
Q Consensus        12 ~k~IiH~v~P~~~~~~~~~~~L~~~~~~~L~~a~~~~~~SIAfP   55 (96)
                      ++.|||++|+.|.... ..+.-.....+.++.+.+.+.+.+-+-
T Consensus        68 ~d~vi~~a~~~~~~~~-~~~~n~~~~~~l~~~~~~~~~~~~v~~  110 (227)
T 3dhn_A           68 ADAVISAFNPGWNNPD-IYDETIKVYLTIIDGVKKAGVNRFLMV  110 (227)
T ss_dssp             CSEEEECCCC-------CCSHHHHHHHHHHHHHHHTTCSEEEEE
T ss_pred             CCEEEEeCcCCCCChh-HHHHHHHHHHHHHHHHHHhCCCEEEEe
Confidence            7899999999876532 111223446677888888898877663

>2vg0_A Short-chain Z-isoprenyl diphosphate synthetase; peptidoglycan synthesis, cell WALL biogenesis/degradation, secreted, cell shape; HET: GPP; 1.7A {Mycobacterium tuberculosis} PDB: 2vfw_A* 2vg1_A*

Probab=86.51  E-value=1.4  Score=30.40  Aligned_cols=51  Identities=16%  Similarity=0.162  Sum_probs=42.1

Q ss_pred             HHHHHHHHHHHhHHhCCCcEEEecccccCCCCcChHHHHHHHHHHHHHHHhc
Q 034374           32 ILRSAYKNCLSVGKANNIQYIAFPAISCGVSQYPPDEAATIAISTVKEFAND   83 (96)
Q Consensus        32 ~L~~~~~~~L~~a~~~~~~SIAfPaigtG~~g~p~~~~a~~~~~~i~~~~~~   83 (96)
                      .=.+.+++.++.|.+.|++.+++=++||+++.=|++++ +..++-+.+++++
T Consensus        31 ~G~~~l~~i~~~c~~~GI~~lTlYaFSteN~kRp~~Ev-~~Lm~l~~~~l~~   81 (227)
T 2vg0_A           31 MGAAKIAEMLRWCHEAGIELATVYLLSTENLQRDPDEL-AALIEIITDVVEE   81 (227)
T ss_dssp             HHHHHHHHHHHHHHHHTCSEEEEEEEETGGGGSCHHHH-HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCCEEEEEeecccccCCCHHHH-HHHHHHHHHHHHH
Confidence            33567888888999999999999999999999999998 5555777777653

>3lgd_A Adenosine deaminase CECR1; TIM barrel, dimerization and receptor binding domains, glyco hydrolase, growth factor, secreted; HET: NAG; 2.00A {Homo sapiens} PDB: 3lgg_A*

Probab=82.97  E-value=13  Score=28.40  Aligned_cols=65  Identities=8%  Similarity=0.080  Sum_probs=48.6

Q ss_pred             HHHHHHHHHHHHHhHHhCCCcEEEe----c-ccccCCCCcChHHHHHHHHHHHHHHHhcCCc-eE-EEEEee
Q 034374           30 EDILRSAYKNCLSVGKANNIQYIAF----P-AISCGVSQYPPDEAATIAISTVKEFANDFKE-VS-HDKFCL   94 (96)
Q Consensus        30 ~~~L~~~~~~~L~~a~~~~~~SIAf----P-aigtG~~g~p~~~~a~~~~~~i~~~~~~~~~-v~-~Vi~~~   94 (96)
                      ++.++..+...++.+.+.|+.-+=+    | .......|+|.++..+.+.+++.++.+..+. |. .+|+|+
T Consensus       195 ~~~~~~~~~e~l~d~a~dgV~Y~ElR~~f~p~~~~~g~~l~~~~vv~~v~~~~~~~~~~~~~fI~~rlI~~~  266 (508)
T 3lgd_A          195 APVFRDYVFRSMQEFYEDNVLYMEIRARLLPVYELSGEHHDEEWSVKTYQEVAQKFVETHPEFIGIKIIYSD  266 (508)
T ss_dssp             HHHHHHHHHHHHHHHHHTTEEEEEEEECCCCCBCTTSCBCCHHHHHHHHHHHHHHHHHHCTTCCEEEEEEEE
T ss_pred             HHHHHHHHHHHHHHHHHcCceEEEEeecCchHhhccCCCCCHHHHHHHHHHHHHHHHHhcCCceEEEEEEEe
Confidence            5678889999999999999886643    3 3344335799999999999999999887763 33 245554

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	96
d1yd9a1	188	c.50.1.2 (A:6-193) Histone macro-H2a1.1 {Rat (Ratt	2e-16
d1spva_	172	c.50.1.2 (A:) Hypothetical protein YmbD {Escherich	4e-16
d1njra_	264	c.50.1.2 (A:) Hypothetical protein Ymr087W {Baker'	1e-13
d1vhua_	192	c.50.1.2 (A:) Hypothetical protein AF1521 {Archaeo	7e-13
d2acfa1	168	c.50.1.2 (A:184-351) Replicase polyprotein 1ab {SA	1e-10
d2fg1a1	154	c.50.1.2 (A:2-155) Hypothetical protein BT1257 {Ba	7e-08

>d1yd9a1 c.50.1.2 (A:6-193) Histone macro-H2a1.1 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 188

class: Alpha and beta proteins (a/b)
fold: Macro domain-like
superfamily: Macro domain-like
family: Macro domain
domain: Histone macro-H2a1.1
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 68.2 bits (166), Expect = 2e-16
 Identities = 22/76 (28%), Positives = 36/76 (47%), Gaps = 1/76 (1%)

Query: 5   CRGFKLPVSHVIHTVGPVFNFHCNPEDILRSAYKNCLSVGKANNIQYIAFPAISCGVSQY 64
             G  LP   VIH   PV+       ++L    KNCL++     ++ IAFP+I  G + +
Sbjct: 79  SAGHGLPAKFVIHCNSPVWGSDKCE-ELLEKTVKNCLALADDRKLKSIAFPSIGSGRNGF 137

Query: 65  PPDEAATIAISTVKEF 80
           P   AA + +  +  +
Sbjct: 138 PKQTAAQLILKAISSY 153

>d1spva_ c.50.1.2 (A:) Hypothetical protein YmbD {Escherichia coli [TaxId: 562]} Length = 172

class: Alpha and beta proteins (a/b)
fold: Macro domain-like
superfamily: Macro domain-like
family: Macro domain
domain: Hypothetical protein YmbD
species: Escherichia coli [TaxId: 562]

 Score = 67.1 bits (163), Expect = 4e-16
 Identities = 36/95 (37%), Positives = 44/95 (46%), Gaps = 1/95 (1%)

Query: 1   MLKECRGFKLPVSHVIHTVGPVFNFHCNPE-DILRSAYKNCLSVGKANNIQYIAFPAISC 59
                    LP   V+HTVGPV+      E  +L+ AY N L +  AN+   +AFPAIS 
Sbjct: 62  HAVITLAGDLPAKAVVHTVGPVWRGGEQNEDQLLQDAYLNSLRLVAANSYTSVAFPAIST 121

Query: 60  GVSQYPPDEAATIAISTVKEFANDFKEVSHDKFCL 94
           GV  YP   AA IA+ TV EF           F  
Sbjct: 122 GVYGYPRAAAAEIAVKTVSEFITRHALPEQVYFVC 156

>d1njra_ c.50.1.2 (A:) Hypothetical protein Ymr087W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 264

class: Alpha and beta proteins (a/b)
fold: Macro domain-like
superfamily: Macro domain-like
family: Macro domain
domain: Hypothetical protein Ymr087W
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 62.0 bits (150), Expect = 1e-13
 Identities = 13/103 (12%), Positives = 33/103 (32%), Gaps = 10/103 (9%)

Query: 3   KECRGFKLPVSHVIHTVGPVFNFHCNP---------EDILRSAYKNCLSVGKANNIQYIA 53
           ++    +  + ++IH    V                 + + +A  N L +    +I  + 
Sbjct: 116 EKTIECRDGIRYIIHVPTVVAPSAPIFNPQNPLKTGFEPVFNAMWNAL-MHSPKDIDGLI 174

Query: 54  FPAISCGVSQYPPDEAATIAISTVKEFANDFKEVSHDKFCLMI 96
            P +  G +  PP  +       ++ +          K  L++
Sbjct: 175 IPGLCTGYAGVPPIISCKSMAFALRLYMAGDHISKELKNVLIM 217

>d1vhua_ c.50.1.2 (A:) Hypothetical protein AF1521 {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Length = 192

class: Alpha and beta proteins (a/b)
fold: Macro domain-like
superfamily: Macro domain-like
family: Macro domain
domain: Hypothetical protein AF1521
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

 Score = 59.0 bits (142), Expect = 7e-13
 Identities = 22/79 (27%), Positives = 37/79 (46%), Gaps = 3/79 (3%)

Query: 12  VSHVIHTVGPVFNF--HCNPEDILRSAYKNCLSVGKANNIQYIAFPAISCGVSQYPPDEA 69
           + +V HTVGP+ +       ++ L  A+   L   +   ++ IAFPA+S G+     ++ 
Sbjct: 93  IKYVFHTVGPICSGMWSEELKEKLYKAFLGPLEKAEEMGVESIAFPAVSAGIYGCDLEKV 152

Query: 70  ATIAISTVKEFAND-FKEV 87
               +  VK F     KEV
Sbjct: 153 VETFLEAVKNFKGSAVKEV 171

>d2acfa1 c.50.1.2 (A:184-351) Replicase polyprotein 1ab {SARS coronavirus [TaxId: 227859]} Length = 168

class: Alpha and beta proteins (a/b)
fold: Macro domain-like
superfamily: Macro domain-like
family: Macro domain
domain: Replicase polyprotein 1ab
species: SARS coronavirus [TaxId: 227859]

 Score = 52.4 bits (125), Expect = 1e-10
 Identities = 18/78 (23%), Positives = 34/78 (43%), Gaps = 8/78 (10%)

Query: 3   KECRGFKLPVSHVIHTVGPVFNFHCNPEDILRSAYKNCLSVGKANNIQYIAFPAISCGVS 62
               G  L     +H VGP  N   + + +L++AY+N       N+   +  P +S G+ 
Sbjct: 80  CLLSGHNLA-KKCLHVVGPNLNAGEDIQ-LLKAAYENF------NSQDILLAPLLSAGIF 131

Query: 63  QYPPDEAATIAISTVKEF 80
              P ++  + + TV+  
Sbjct: 132 GAKPLQSLQVCVQTVRTQ 149

>d2fg1a1 c.50.1.2 (A:2-155) Hypothetical protein BT1257 {Bacteroides thetaiotaomicron [TaxId: 818]} Length = 154

class: Alpha and beta proteins (a/b)
fold: Macro domain-like
superfamily: Macro domain-like
family: Macro domain
domain: Hypothetical protein BT1257
species: Bacteroides thetaiotaomicron [TaxId: 818]

 Score = 45.1 bits (106), Expect = 7e-08
 Identities = 11/71 (15%), Positives = 24/71 (33%), Gaps = 5/71 (7%)

Query: 14  HVIHTVGPVFNFHC--NPEDILRSAYKNCL---SVGKANNIQYIAFPAISCGVSQYPPDE 68
           +V + +G    +        I   A + CL   ++    +   +  P I CG++    + 
Sbjct: 74  YVANMIGQHGIYKDSKGLPPIRYDAVRQCLKEVALFTIAHKASVHMPRIGCGLAGGKWEL 133

Query: 69  AATIAISTVKE 79
              I    +  
Sbjct: 134 MEQIIKEELIT 144

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	96
d1yd9a1	188	Histone macro-H2a1.1 {Rat (Rattus norvegicus) [Tax	99.97
d1spva_	172	Hypothetical protein YmbD {Escherichia coli [TaxId	99.97
d1vhua_	192	Hypothetical protein AF1521 {Archaeon Archaeoglobu	99.96
d1njra_	264	Hypothetical protein Ymr087W {Baker's yeast (Sacch	99.85
d2acfa1	168	Replicase polyprotein 1ab {SARS coronavirus [TaxId	99.85
d2fg1a1	154	Hypothetical protein BT1257 {Bacteroides thetaiota	99.54

>d1yd9a1 c.50.1.2 (A:6-193) Histone macro-H2a1.1 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Macro domain-like
superfamily: Macro domain-like
family: Macro domain
domain: Histone macro-H2a1.1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.97  E-value=5.6e-31  Score=178.13  Aligned_cols=94  Identities=27%  Similarity=0.501  Sum_probs=83.8

Q ss_pred             CceeccCCCCCCceEEEecCCCcCCCCCcHHHHHHHHHHHHHhHHhCCCcEEEecccccCCCCcChHHHHHHHHHHHHHH
Q 034374            1 MLKECRGFKLPVSHVIHTVGPVFNFHCNPEDILRSAYKNCLSVGKANNIQYIAFPAISCGVSQYPPDEAATIAISTVKEF   80 (96)
Q Consensus         1 ea~~T~ag~L~~k~IiH~v~P~~~~~~~~~~~L~~~~~~~L~~a~~~~~~SIAfPaigtG~~g~p~~~~a~~~~~~i~~~   80 (96)
                      ++++|++|+|+||||||+++|.|+.+ ++.+.|++||+++|+.|++++++|||||+||||.+|||++++|++|++++++|
T Consensus        75 ~~~vT~~~~L~~k~IiH~v~P~~~~~-~~~~~L~~~~~~~L~~a~~~~~~SIafP~igtG~~g~p~~~~a~~~~~ai~~f  153 (188)
T d1yd9a1          75 GAAVSAGHGLPAKFVIHCNSPVWGSD-KCEELLEKTVKNCLALADDRKLKSIAFPSIGSGRNGFPKQTAAQLILKAISSY  153 (188)
T ss_dssp             CEEEEECTTSSSSEEEEECCCCTTST-THHHHHHHHHHHHHHHHHHTTCSEEEECCCSBSTTCBCHHHHHHHHHHHHHHH
T ss_pred             CeeecccCCCCceEEeeeccccCCCc-chHHHHHHHHHHHHHHHHHcCCCeEEeccccCCCCCCCHHHHHHHHHHHHHHH
Confidence            57899999999999999999999865 56789999999999999999999999999999999999999999999999999


Q ss_pred             HhcC--CceEEEEEeee
Q 034374           81 ANDF--KEVSHDKFCLM   95 (96)
Q Consensus        81 ~~~~--~~v~~Vi~~~~   95 (96)
                      +++.  +.++.|.|++|
T Consensus       154 l~~~~~~~l~~V~~v~~  170 (188)
T d1yd9a1         154 FVSTMSSSIKTVYFVLF  170 (188)
T ss_dssp             HTTCTTCCCCEEEEECC
T ss_pred             HHhcCCCCccEEEEEeC
Confidence            8753  34555555554

>d1spva_ c.50.1.2 (A:) Hypothetical protein YmbD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Macro domain-like
superfamily: Macro domain-like
family: Macro domain
domain: Hypothetical protein YmbD
species: Escherichia coli [TaxId: 562]

Probab=99.97  E-value=8.2e-31  Score=174.59  Aligned_cols=95  Identities=38%  Similarity=0.485  Sum_probs=86.2

Q ss_pred             CceeccCCCCCCceEEEecCCCcCCCC-CcHHHHHHHHHHHHHhHHhCCCcEEEecccccCCCCcChHHHHHHHHHHHHH
Q 034374            1 MLKECRGFKLPVSHVIHTVGPVFNFHC-NPEDILRSAYKNCLSVGKANNIQYIAFPAISCGVSQYPPDEAATIAISTVKE   79 (96)
Q Consensus         1 ea~~T~ag~L~~k~IiH~v~P~~~~~~-~~~~~L~~~~~~~L~~a~~~~~~SIAfPaigtG~~g~p~~~~a~~~~~~i~~   79 (96)
                      ++++|++|+|+||+|||+++|.|++++ .+.++|++||+++|+.|++++++|||||+||||.+|||++++|++|++++++
T Consensus        62 ~~~~T~~~~l~~k~IiH~v~P~~~~~~~~~~~~l~~~~~~~L~~a~~~~~~sIa~P~lgtG~~g~p~~~~a~~~~~ai~~  141 (172)
T d1spva_          62 HAVITLAGDLPAKAVVHTVGPVWRGGEQNEDQLLQDAYLNSLRLVAANSYTSVAFPAISTGVYGYPRAAAAEIAVKTVSE  141 (172)
T ss_dssp             CEEEECCTTSSSSEEEEECCCCCSSSSSSHHHHHHHHHHHHHHHHHHTTCSEEEECCTTSSTTCCCHHHHHHHHHHHHHH
T ss_pred             CEEEEEcCCCCCcEEEEeccccccCCchHHHHHHHHHHHHHHHHHHHcCCCEEEeccccCCCCCCCHHHHHHHHHHHHHH
Confidence            578999999999999999999998866 5678899999999999999999999999999999999999999999999999


Q ss_pred             HHhcCCceEEEEEeee
Q 034374           80 FANDFKEVSHDKFCLM   95 (96)
Q Consensus        80 ~~~~~~~v~~Vi~~~~   95 (96)
                      |+++.+.++.|.|++|
T Consensus       142 fl~~~~~~~~V~~v~~  157 (172)
T d1spva_         142 FITRHALPEQVYFVCY  157 (172)
T ss_dssp             HHHHCCSSSEEEEEES
T ss_pred             HHHhCCCccEEEEEEC
Confidence            9987665555556554

>d1vhua_ c.50.1.2 (A:) Hypothetical protein AF1521 {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: Macro domain-like
superfamily: Macro domain-like
family: Macro domain
domain: Hypothetical protein AF1521
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=99.96  E-value=8.7e-31  Score=177.58  Aligned_cols=93  Identities=25%  Similarity=0.351  Sum_probs=83.9

Q ss_pred             CceeccCCCCC---CceEEEecCCCcCCCCC--cHHHHHHHHHHHHHhHHhCCCcEEEecccccCCCCcChHHHHHHHHH
Q 034374            1 MLKECRGFKLP---VSHVIHTVGPVFNFHCN--PEDILRSAYKNCLSVGKANNIQYIAFPAISCGVSQYPPDEAATIAIS   75 (96)
Q Consensus         1 ea~~T~ag~L~---~k~IiH~v~P~~~~~~~--~~~~L~~~~~~~L~~a~~~~~~SIAfPaigtG~~g~p~~~~a~~~~~   75 (96)
                      |+++|++|+||   ||||||+|+|.|+++..  ..+.|++||+++|+.|++++++|||||+||||.+|+|++++|++|++
T Consensus        79 ~~~~T~~~~L~~~~~k~ViH~v~P~~~~~~~~~~~~~L~~~~~~~L~~A~~~~~~SIA~P~lgtG~~g~p~~~~a~~~~~  158 (192)
T d1vhua_          79 EVVVTPAMNLEERGIKYVFHTVGPICSGMWSEELKEKLYKAFLGPLEKAEEMGVESIAFPAVSAGIYGCDLEKVVETFLE  158 (192)
T ss_dssp             CCEEEECGGGGGGTCCEEEEEECCCCTTCCCHHHHHHHHHHHHHHHHHHHHHTCCEEEECCTTSSTTCCCHHHHHHHHHH
T ss_pred             cEEEEecccCCcccccEEEEEeeecccCCCcchhHHHHHHHHHHHHHHHHHcCCcEEEecCccCCCCCCCHHHHHHHHHH
Confidence            68999999997   79999999999998763  45789999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhc-CCceEEEEEe
Q 034374           76 TVKEFAND-FKEVSHDKFC   93 (96)
Q Consensus        76 ~i~~~~~~-~~~v~~Vi~~   93 (96)
                      ++++|.++ +++|++|+|+
T Consensus       159 ai~~f~~~~l~~V~~v~~~  177 (192)
T d1vhua_         159 AVKNFKGSAVKEVALVIYD  177 (192)
T ss_dssp             HHHHCCCSSCCEEEEEESS
T ss_pred             HHHHhccCCcCEEEEEECC
Confidence            99999874 4667777653

>d1njra_ c.50.1.2 (A:) Hypothetical protein Ymr087W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: Macro domain-like
superfamily: Macro domain-like
family: Macro domain
domain: Hypothetical protein Ymr087W
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.85  E-value=1.5e-22  Score=143.15  Aligned_cols=89  Identities=15%  Similarity=0.159  Sum_probs=71.3

Q ss_pred             cCCCCCCceEEEe---cCCCcCCCC-C-----cHHHHHHHHHHHHHhHHhCCCcEEEecccccCCCCcChHHHHHHHHHH
Q 034374            6 RGFKLPVSHVIHT---VGPVFNFHC-N-----PEDILRSAYKNCLSVGKANNIQYIAFPAISCGVSQYPPDEAATIAIST   76 (96)
Q Consensus         6 ~ag~L~~k~IiH~---v~P~~~~~~-~-----~~~~L~~~~~~~L~~a~~~~~~SIAfPaigtG~~g~p~~~~a~~~~~~   76 (96)
                      ++++|+||||||+   ++|.|.... +     ..+.+.+|++++|+. ++++++|||||+||||.+|+|+++||++|+.+
T Consensus       119 ~~~nl~~kyVIHaPTMv~P~~~~~~~~~~~~~~~~~l~~a~~~~L~a-~e~~i~SIAfPaigTGvgg~p~~~aAr~m~~A  197 (264)
T d1njra_         119 IECRDGIRYIIHVPTVVAPSAPIFNPQNPLKTGFEPVFNAMWNALMH-SPKDIDGLIIPGLCTGYAGVPPIISCKSMAFA  197 (264)
T ss_dssp             --CCTTEEEEEECCCBSCSSSCSCCTTCHHHHTHHHHHHHHHHHHHT-SCTTCSEEEECCTTCSTTCCCHHHHHHHHHHH
T ss_pred             ccccCCCCEEEECcccccCCCCCCCchHHHHHHHHHHHHHHHHHHHH-hhcCCCEEEeCccccCCCCcCHHHHHHHHHHH
Confidence            3479999999999   889886544 2     246788999999864 57799999999999999999999999999999


Q ss_pred             HHHHHhcC--C-ceEEEEEeee
Q 034374           77 VKEFANDF--K-EVSHDKFCLM   95 (96)
Q Consensus        77 i~~~~~~~--~-~v~~Vi~~~~   95 (96)
                      +++|+.+.  + +++.|++++|
T Consensus       198 i~~fl~~~~~~~~l~~v~~~~f  219 (264)
T d1njra_         198 LRLYMAGDHISKELKNVLIMYY  219 (264)
T ss_dssp             HHHHHTGGGSCHHHHHHHHHHH
T ss_pred             HHHHHHcCCCchhhhEEEEEEe
Confidence            99999753  2 3555555544

>d2acfa1 c.50.1.2 (A:184-351) Replicase polyprotein 1ab {SARS coronavirus [TaxId: 227859]}

class: Alpha and beta proteins (a/b)
fold: Macro domain-like
superfamily: Macro domain-like
family: Macro domain
domain: Replicase polyprotein 1ab
species: SARS coronavirus [TaxId: 227859]

Probab=99.85  E-value=5e-22  Score=131.92  Aligned_cols=71  Identities=25%  Similarity=0.383  Sum_probs=61.7

Q ss_pred             CceeccCCCCCCceEEEecCCCcCCCCCcHHHHHHHHHHHHHhHHhCCCcEEEecccccCCCCcChHHHHHHHHHHHHH
Q 034374            1 MLKECRGFKLPVSHVIHTVGPVFNFHCNPEDILRSAYKNCLSVGKANNIQYIAFPAISCGVSQYPPDEAATIAISTVKE   79 (96)
Q Consensus         1 ea~~T~ag~L~~k~IiH~v~P~~~~~~~~~~~L~~~~~~~L~~a~~~~~~SIAfPaigtG~~g~p~~~~a~~~~~~i~~   79 (96)
                      ++++|++|+| +++|||+++|.|.++. ..++++.+|++      .++++|||||+||||.+|+|++++|++|++++++
T Consensus        78 ~~v~t~g~~l-~k~IiH~v~P~~~~~~-~~~ll~~~~~~------~~~~~sIA~PaigtG~~g~p~~~~a~~~~~~v~~  148 (168)
T d2acfa1          78 GSCLLSGHNL-AKKCLHVVGPNLNAGE-DIQLLKAAYEN------FNSQDILLAPLLSAGIFGAKPLQSLQVCVQTVRT  148 (168)
T ss_dssp             CEEEEECTTT-CSEEEEECCCCGGGTC-CTTHHHHHHHG------GGGSSEEEECCTTCGGGCCCHHHHHHHHHHHCCS
T ss_pred             CeEeccCcCc-chhheeecCCCccccc-HHHHHHHHHHh------hccCceEEecccccCCCCCChHHHHHHHHHHHHH
Confidence            4789999999 5899999999998764 34577888764      5789999999999999999999999999999874

>d2fg1a1 c.50.1.2 (A:2-155) Hypothetical protein BT1257 {Bacteroides thetaiotaomicron [TaxId: 818]}

class: Alpha and beta proteins (a/b)
fold: Macro domain-like
superfamily: Macro domain-like
family: Macro domain
domain: Hypothetical protein BT1257
species: Bacteroides thetaiotaomicron [TaxId: 818]

Probab=99.54  E-value=7.6e-15  Score=94.71  Aligned_cols=86  Identities=15%  Similarity=0.108  Sum_probs=65.1

Q ss_pred             CceeccCCCCCCceEEEecCCCcCCCC------CcHHHHHHHHHHHHHhHHhCCCcEEEecccccCCCCcChHHHHHHHH
Q 034374            1 MLKECRGFKLPVSHVIHTVGPVFNFHC------NPEDILRSAYKNCLSVGKANNIQYIAFPAISCGVSQYPPDEAATIAI   74 (96)
Q Consensus         1 ea~~T~ag~L~~k~IiH~v~P~~~~~~------~~~~~L~~~~~~~L~~a~~~~~~SIAfPaigtG~~g~p~~~~a~~~~   74 (96)
                      ++.+|+++  ++++|+|.++|.|.+..      ...+.|++++++....+++++ +|||||+||||.+|+|.+++++++.
T Consensus        63 ~~~~~~~~--~~~~I~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~-~sIa~P~Ig~Gi~G~~w~~v~~ii~  139 (154)
T d2fg1a1          63 AVQFVNVE--NKLYVANMIGQHGIYKDSKGLPPIRYDAVRQCLKEVALFTIAHK-ASVHMPRIGCGLAGGKWELMEQIIK  139 (154)
T ss_dssp             CEEEEEEE--TTEEEEEEEEESSSSCCTTCCCSBCHHHHHHHHHHHHHHHHHHT-CEEEECCTTCSTTCCCHHHHHHHHH
T ss_pred             cEEEEECC--CceEEEEEEeEeCCCCCcCCccHHHHHHHHHHHHHHHHHHHhcC-cEEEeCcccCCCCCCCHHHHHHHHH
Confidence            45677766  46899999998764322      245789999988887777655 7999999999999999999999986


Q ss_pred             HHHHHHHhcCCceEEEEEee
Q 034374           75 STVKEFANDFKEVSHDKFCL   94 (96)
Q Consensus        75 ~~i~~~~~~~~~v~~Vi~~~   94 (96)
                      +++.++     .+.+++|++
T Consensus       140 ~~~~~~-----~i~v~vy~~  154 (154)
T d2fg1a1         140 EELITK-----EIAVTVYDL  154 (154)
T ss_dssp             HHTGGG-----TCCEEEEEC
T ss_pred             HHhccC-----CCeEEEEEC
Confidence            665432     466666653