Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
ID Alignment Graph Length
Definition
E-value Query 96
cd01275 126
cd01275, FHIT, FHIT (fragile histidine family): FH
3e-22 pfam01230 97
pfam01230, HIT, HIT domain
2e-16 COG0537 138
COG0537, Hit, Diadenosine tetraphosphate (Ap4A) hy
3e-13 cd00468 86
cd00468, HIT_like, HIT family: HIT (Histidine tria
2e-12 cd01277 103
cd01277, HINT_subgroup, HINT (histidine triad nucl
6e-11 cd01276 104
cd01276, PKCI_related, Protein Kinase C Interactin
0.001
>gnl|CDD|238606 cd01275, FHIT, FHIT (fragile histidine family): FHIT proteins, related to the HIT family carry a motif HxHxH/Qxx (x, is a hydrophobic amino acid), On the basis of sequence, substrate specificity, structure, evolution and mechanism, HIT proteins are classified into three branches: the Hint branch, which consists of adenosine 5' -monophosphoramide hydrolases, the Fhit branch, that consists of diadenosine polyphosphate hydrolases, and the GalT branch consisting of specific nucloside monophosphate transferases
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Score = 83.5 bits (207), Expect = 3e-22
Identities = 27/72 (37%), Positives = 32/72 (44%)
Query: 16 PRRDAVRFGDLTADETRDLWLTAQTVGTQLESYHKASSLAFAIQDGPQAGQTVPHVHIHI 75
P R R DLT +E DL+ Q L+ +K I DG G VPHVHIHI
Sbjct: 41 PYRHVPRLEDLTPEEIADLFKLVQLAMKALKVVYKPDGFNIGINDGKAGGGIVPHVHIHI 100
Query: 76 VPRKAASSEEND 87
VPR +
Sbjct: 101 VPRWNGDTNFMP 112
Fhit plays a very important role in the development of tumours. Infact, Fhit deletions are among the earliest and most frequent genetic alterations in the development of tumours. Length = 126
>gnl|CDD|216377 pfam01230, HIT, HIT domain
Back Show alignment and domain information
Score = 67.3 bits (165), Expect = 2e-16
Identities = 25/64 (39%), Positives = 35/64 (54%), Gaps = 1/64 (1%)
Query: 16 PRRDAVRFGDLTADETRDLWLTAQTVGTQLESYHKASSLAFAIQDGPQAGQTVPHVHIHI 75
P++ DLT +E DL A+ V L KA I +G AGQ+VPH+HIH+
Sbjct: 33 PKKHITELHDLTPEELGDLMSEAKKVARALGK-AKADGYRIVINNGAAAGQSVPHLHIHV 91
Query: 76 VPRK 79
+PR+
Sbjct: 92 IPRR 95
>gnl|CDD|223611 COG0537, Hit, Diadenosine tetraphosphate (Ap4A) hydrolase and other HIT family hydrolases [Nucleotide transport and metabolism / Carbohydrate transport and metabolism / General function prediction only]
Back Show alignment and domain information
Score = 60.5 bits (147), Expect = 3e-13
Identities = 27/76 (35%), Positives = 37/76 (48%)
Query: 4 IEQYAFGPFKIDPRRDAVRFGDLTADETRDLWLTAQTVGTQLESYHKASSLAFAIQDGPQ 63
I A G + P+R DL +E +L+L AQ + L+ A I +G
Sbjct: 30 IYPAAPGHTLVIPKRHVSDLEDLDPEELAELFLLAQKIAKALKEAFGADGYNIGINNGKA 89
Query: 64 AGQTVPHVHIHIVPRK 79
AGQ V H+HIHI+PR
Sbjct: 90 AGQEVFHLHIHIIPRY 105
>gnl|CDD|238263 cd00468, HIT_like, HIT family: HIT (Histidine triad) proteins, named for a motif related to the sequence HxHxH/Qxx (x, a hydrophobic amino acid), are a superfamily of nucleotide hydrolases and transferases, which act on the alpha-phosphate of ribonucleotides
Back Show alignment and domain information
Score = 56.7 bits (137), Expect = 2e-12
Identities = 27/68 (39%), Positives = 37/68 (54%)
Query: 10 GPFKIDPRRDAVRFGDLTADETRDLWLTAQTVGTQLESYHKASSLAFAIQDGPQAGQTVP 69
G + P+R DL DL +TAQ V +LE + SL + DG AGQ+VP
Sbjct: 19 GHVLVCPKRHVETLPDLDEALLADLVITAQRVAAELEKHGNVPSLTVFVNDGAAAGQSVP 78
Query: 70 HVHIHIVP 77
HVH+H++P
Sbjct: 79 HVHLHVLP 86
On the basis of sequence, substrate specificity, structure, evolution and mechanism, HIT proteins are classified in the literacture into three major branches: the Hint branch, which consists of adenosine 5' -monophosphoramide hydrolases, the Fhit branch, that consists of diadenosine polyphosphate hydrolases, and the GalT branch consisting of specific nucloside monophosphate transferases. Further sequence analysis reveals several new closely related, yet uncharacterized subgroups. Length = 86
>gnl|CDD|238608 cd01277, HINT_subgroup, HINT (histidine triad nucleotide-binding protein) subgroup: Members of this CD belong to the superfamily of histidine triad hydrolases that act on alpha-phosphate of ribonucleotides
Back Show alignment and domain information
Score = 53.8 bits (130), Expect = 6e-11
Identities = 23/63 (36%), Positives = 33/63 (52%)
Query: 16 PRRDAVRFGDLTADETRDLWLTAQTVGTQLESYHKASSLAFAIQDGPQAGQTVPHVHIHI 75
P++ DL +E +L L A+ V L+ KA L +G AGQ V HVH+H+
Sbjct: 41 PKKHYENLLDLDPEELAELILAAKKVARALKKALKADGLNILQNNGRAAGQVVFHVHVHV 100
Query: 76 VPR 78
+PR
Sbjct: 101 IPR 103
This subgroup includes members from all three forms of cellular life. Although the biochemical function has not been characterised for many of the members of this subgroup, the proteins from Yeast have been shown to be involved in secretion, peroxisome formation and gene expression. Length = 103
>gnl|CDD|238607 cd01276, PKCI_related, Protein Kinase C Interacting protein related (PKCI): PKCI and related proteins belong to the ubiquitous HIT family of hydrolases that act on alpha-phosphates of ribonucleotides
Back Show alignment and domain information
Score = 34.8 bits (81), Expect = 0.001
Identities = 16/63 (25%), Positives = 23/63 (36%), Gaps = 5/63 (7%)
Query: 16 PRRDAVRFGDLTADETR---DLWLTAQTVGTQLESYHKASSLAFAIQDGPQAGQTVPHVH 72
P++ D T ++ L A V L L I G GQ V H+H
Sbjct: 41 PKKHIASLSDATEEDEELLGHLLSAAAKVAKDLGIAEDGYRLV--INCGKDGGQEVFHLH 98
Query: 73 IHI 75
+H+
Sbjct: 99 LHL 101
The members of this subgroup have a conserved HxHxHxx motif (x is a hydrophobic residue) that is a signature for this family. No enzymatic activity has been reported however, for PKCI and its related members. Length = 104
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
ID Alignment Graph Length
Definition
Probability Query
96
COG0537 138
Hit Diadenosine tetraphosphate (Ap4A) hydrolase an
99.96 KOG3379 150
consensus Diadenosine polyphosphate hydrolase and
99.95 cd01275 126
FHIT FHIT (fragile histidine family): FHIT protein
99.95 PF01230 98
HIT: HIT domain; InterPro: IPR001310 The Histidine
99.95 cd01277 103
HINT_subgroup HINT (histidine triad nucleotide-bin
99.94 cd00468 86
HIT_like HIT family: HIT (Histidine triad) protein
99.93 PRK10687 119
purine nucleoside phosphoramidase; Provisional
99.92 cd01276 104
PKCI_related Protein Kinase C Interacting protein
99.9 PLN02643 336
ADP-glucose phosphorylase
99.86 TIGR00209 347
galT_1 galactose-1-phosphate uridylyltransferase,
99.85 KOG3275 127
consensus Zinc-binding protein of the histidine tr
99.85 PRK11720 346
galactose-1-phosphate uridylyltransferase; Provisi
99.84 cd01278 104
aprataxin_related aprataxin related: Aprataxin, a
99.83 cd00608 329
GalT Galactose-1-phosphate uridyl transferase (Gal
99.83 PF02744 166
GalP_UDP_tr_C: Galactose-1-phosphate uridyl transf
99.31 KOG2958 354
consensus Galactose-1-phosphate uridylyltransferas
99.25 PF11969 116
DcpS_C: Scavenger mRNA decapping enzyme C-term bin
99.25 COG1085 338
GalT Galactose-1-phosphate uridylyltransferase [En
99.21 PF04677 121
CwfJ_C_1: Protein similar to CwfJ C-terminus 1; In
99.02 KOG4359 166
consensus Protein kinase C inhibitor-like protein
99.0 KOG2476 528
consensus Uncharacterized conserved protein [Funct
97.96 PLN03103 403
GDP-L-galactose-hexose-1-phosphate guanyltransfera
97.42 KOG2477 628
consensus Uncharacterized conserved protein [Funct
97.32 KOG3969 310
consensus Uncharacterized conserved protein [Funct
97.32 cd00608 329
GalT Galactose-1-phosphate uridyl transferase (Gal
97.25 PLN02643 336
ADP-glucose phosphorylase
97.24 COG1085 338
GalT Galactose-1-phosphate uridylyltransferase [En
96.84 PRK11720 346
galactose-1-phosphate uridylyltransferase; Provisi
96.84 COG4360 298
APA2 ATP adenylyltransferase (5',5'''-P-1,P-4-tetr
96.56 TIGR00209 347
galT_1 galactose-1-phosphate uridylyltransferase,
96.11 PF01087 183
GalP_UDP_transf: Galactose-1-phosphate uridyl tran
96.02 TIGR00672 250
cdh CDP-diacylglycerol pyrophosphatase, bacterial
95.85 PF02611 222
CDH: CDP-diacylglycerol pyrophosphatase; InterPro:
95.69 PRK05471 252
CDP-diacylglycerol pyrophosphatase; Provisional
95.5 KOG2720 431
consensus Predicted hydrolase (HIT family) [Genera
95.18 COG2134 252
Cdh CDP-diacylglycerol pyrophosphatase [Lipid meta
94.88 KOG0562 184
consensus Predicted hydrolase (HIT family) [Genera
94.48 PF01076 196
Mob_Pre: Plasmid recombination enzyme; InterPro: I
91.44 COG5075 305
Uncharacterized conserved protein [Function unknow
89.98
>COG0537 Hit Diadenosine tetraphosphate (Ap4A) hydrolase and other HIT family hydrolases [Nucleotide transport and metabolism / Carbohydrate transport and metabolism / General function prediction only]
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Probab=99.96 E-value=2.4e-28 Score=156.89 Aligned_cols=84 Identities=32% Similarity=0.468 Sum_probs=79.4
Q ss_pred CCCCCccccEEEeCCcccCCcCCCCHHHHHHHHHHHHHHHHHHHhhcCCCceEEEEecCCCCCCCcceEEEEEeeCCCCC
Q 034378 3 SIEQYAFGPFKIDPRRDAVRFGDLTADETRDLWLTAQTVGTQLESYHKASSLAFAIQDGPQAGQTVPHVHIHIVPRKAAS 82 (96)
Q Consensus 3 ~~~p~~~g~~lIiPk~H~~~l~dl~~~e~~~l~~~~~~v~~~l~~~~~~~~~~i~~~~~~~~gq~v~H~HiHiiPr~~~d 82 (96)
..+|+++||+|||||+|+.++.|++++++.+++.+++++++++++.+++++||+++|+|..+||.|+|+|+|||||+.+|
T Consensus 29 d~~P~~~gH~LviPk~h~~~l~~l~~~~~~~l~~~~~~ia~al~~~~~~~g~ni~~N~g~~agq~V~HlH~HvIPr~~~d 108 (138)
T COG0537 29 DIYPAAPGHTLVIPKRHVSDLEDLDPEELAELFLLAQKIAKALKEAFGADGYNIGINNGKAAGQEVFHLHIHIIPRYKGD 108 (138)
T ss_pred cCCCCCCCeEEEEeccchhhhhhCCHHHHHHHHHHHHHHHHHHHHHhCCCceEEEEecCcccCcCcceEEEEEcCCcCCC
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999977
Q ss_pred CCCC
Q 034378 83 SEEN 86 (96)
Q Consensus 83 ~~~~ 86 (96)
....
T Consensus 109 ~~~~ 112 (138)
T COG0537 109 DNFP 112 (138)
T ss_pred CCcc
Confidence 5433
>KOG3379 consensus Diadenosine polyphosphate hydrolase and related proteins of the histidine triad (HIT) family [Nucleotide transport and metabolism; General function prediction only]
Back Show alignment and domain information
Probab=99.95 E-value=7e-28 Score=152.15 Aligned_cols=89 Identities=48% Similarity=0.651 Sum_probs=86.7
Q ss_pred CCCCCccccEEEeCCcccCCcCCCCHHHHHHHHHHHHHHHHHHHhhcCCCceEEEEecCCCCCCCcceEEEEEeeCCCCC
Q 034378 3 SIEQYAFGPFKIDPRRDAVRFGDLTADETRDLWLTAQTVGTQLESYHKASSLAFAIQDGPQAGQTVPHVHIHIVPRKAAS 82 (96)
Q Consensus 3 ~~~p~~~g~~lIiPk~H~~~l~dl~~~e~~~l~~~~~~v~~~l~~~~~~~~~~i~~~~~~~~gq~v~H~HiHiiPr~~~d 82 (96)
+.+|+.|||+||+|+|-+..+.||+.+|..+|+..++++.+.|++.++.+++++.+++|+.+||+|+|+|+||+||+.+|
T Consensus 31 NlkPvvpgHVLv~P~R~vpRl~dLt~~E~aDlF~t~~~v~~~lek~~~~ts~ti~iQDG~~AGQTVpHvHvHIlPR~~gD 110 (150)
T KOG3379|consen 31 NLKPVVPGHVLVSPLRVVPRLTDLTAAETADLFTTVQKVQRVLEKHYNATSLTIAIQDGPEAGQTVPHVHVHILPRKAGD 110 (150)
T ss_pred eccccccceEEEeccccccccccCCcHHHHHHHHHHHHHHHHHHHHhcccceEEEeccccccCcccceeEEEEccccccc
Confidence 67999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCccc
Q 034378 83 SEENDGNVS 91 (96)
Q Consensus 83 ~~~~~~~~~ 91 (96)
|..|+.||.
T Consensus 111 f~~Nd~IY~ 119 (150)
T KOG3379|consen 111 FGDNDLIYD 119 (150)
T ss_pred cccchHHHH
Confidence 999999885
>cd01275 FHIT FHIT (fragile histidine family): FHIT proteins, related to the HIT family carry a motif HxHxH/Qxx (x, is a hydrophobic amino acid), On the basis of sequence, substrate specificity, structure, evolution and mechanism, HIT proteins are classified into three branches: the Hint branch, which consists of adenosine 5' -monophosphoramide hydrolases, the Fhit branch, that consists of diadenosine polyphosphate hydrolases, and the GalT branch consisting of specific nucloside monophosphate transferases
Back Show alignment and domain information
Probab=99.95 E-value=4.9e-27 Score=148.25 Aligned_cols=84 Identities=35% Similarity=0.499 Sum_probs=79.0
Q ss_pred CCCCCccccEEEeCCcccCCcCCCCHHHHHHHHHHHHHHHHHHHhhcCCCceEEEEecCCCCCCCcceEEEEEeeCCCCC
Q 034378 3 SIEQYAFGPFKIDPRRDAVRFGDLTADETRDLWLTAQTVGTQLESYHKASSLAFAIQDGPQAGQTVPHVHIHIVPRKAAS 82 (96)
Q Consensus 3 ~~~p~~~g~~lIiPk~H~~~l~dl~~~e~~~l~~~~~~v~~~l~~~~~~~~~~i~~~~~~~~gq~v~H~HiHiiPr~~~d 82 (96)
+..|..|||+||+||+|+.++.+|+++|+.+++.+++++.+++++.+++++||+++|+|+.+||+++|+|+||+||+++|
T Consensus 28 ~~~p~~~gh~lIiPk~H~~~~~~L~~~e~~~l~~~~~~v~~~l~~~~~~~~~n~~~~~g~~~gq~v~H~HiHiiPR~~~d 107 (126)
T cd01275 28 NLYPYNPGHVLVVPYRHVPRLEDLTPEEIADLFKLVQLAMKALKVVYKPDGFNIGINDGKAGGGIVPHVHIHIVPRWNGD 107 (126)
T ss_pred cCCCCCCCcEEEEeccccCChhhCCHHHHHHHHHHHHHHHHHHHHhcCCCceEEEEeCCcccCCCcCEEEEEEeCCcCCC
Confidence 46899999999999999999999999999999999999999999999999999999999989999999999999999876
Q ss_pred CCCC
Q 034378 83 SEEN 86 (96)
Q Consensus 83 ~~~~ 86 (96)
...+
T Consensus 108 ~~~~ 111 (126)
T cd01275 108 TNFM 111 (126)
T ss_pred CCCC
Confidence 5444
Fhit plays a very important role in the development of tumours. Infact, Fhit deletions are among the earliest and most frequent genetic alterations in the development of tumours.
>PF01230 HIT: HIT domain; InterPro: IPR001310 The Histidine Triad (HIT) motif, His-x-His-x-His-x-x (x, a hydrophobic amino acid) was identified as being highly conserved in a variety of organisms []
Back Show alignment and domain information
Probab=99.95 E-value=2e-27 Score=144.16 Aligned_cols=78 Identities=31% Similarity=0.538 Sum_probs=74.7
Q ss_pred CCCCCccccEEEeCCcccCCcCCCCHHHHHHHHHHHHHHHHHHHhhcCCCceEEEEecCCCCCCCcceEEEEEeeCCC
Q 034378 3 SIEQYAFGPFKIDPRRDAVRFGDLTADETRDLWLTAQTVGTQLESYHKASSLAFAIQDGPQAGQTVPHVHIHIVPRKA 80 (96)
Q Consensus 3 ~~~p~~~g~~lIiPk~H~~~l~dl~~~e~~~l~~~~~~v~~~l~~~~~~~~~~i~~~~~~~~gq~v~H~HiHiiPr~~ 80 (96)
...|.++||+||+||+|++++.||+++++.+|+.+++++++++++.+++++||+.+|+|+.+||+++|+|+||+||++
T Consensus 20 ~~~p~~~gh~LVipk~H~~~l~dl~~~~~~~l~~~~~~v~~~l~~~~~~~~~~~~~~~g~~~gq~v~HlH~HviPR~~ 97 (98)
T PF01230_consen 20 DIFPISPGHLLVIPKRHVESLSDLPPEERAELMQLVQKVAKALKEAFGPDGYNVIINNGPAAGQSVPHLHFHVIPRYK 97 (98)
T ss_dssp ESSTSSTTEEEEEESSTGSSGGGSHHHHHHHHHHHHHHHHHHHHHHHTTSEEEEEEEESGGGTSSSSS-EEEEEEEST
T ss_pred cCCCCCCeEEEEEecccccchhcCCHHHHHHHHHHHHHHHHHHhcccccceeeccccchhhhcCccCEEEEEEecccC
Confidence 468999999999999999999999999999999999999999999999999999999999999999999999999986
Crystal structure of rabbit Hint, purified as an adenosine and AMP-binding protein, showed that proteins in the HIT superfamily are conserved as nucleotide-binding proteins and that Hint homologues, which are found in all forms of life, are structurally related to Fhit homologues and GalT-related enzymes, which have more restricted phylogenetic profiles []. Hint homologues including rabbit Hint and yeast Hnt1 hydrolyse adenosine 5' monophosphoramide substrates such as AMP-NH2 and AMP-lysine to AMP plus the amine product and function as positive regulators of Cdk7/Kin28 in vivo []. Fhit homologues are diadenosine polyphosphate hydrolases [] and function as tumour suppressors in human and mouse [] though the tumour suppressing function of Fhit does not depend on ApppA hydrolysis []. The third branch of the HIT superfamily, which includes GalT homologues, contains a related His-X-His-X-Gln motif and transfers nucleoside monophosphate moieties to phosphorylated second substrates rather than hydrolysing them [].; PDB: 3LB5_B 1EMS_A 1Y23_A 3ANO_B 1KPE_B 1KPC_A 4EQE_B 1KPA_A 1KPB_B 4EQG_B ....
>cd01277 HINT_subgroup HINT (histidine triad nucleotide-binding protein) subgroup: Members of this CD belong to the superfamily of histidine triad hydrolases that act on alpha-phosphate of ribonucleotides
Back Show alignment and domain information
Probab=99.94 E-value=3.4e-26 Score=139.24 Aligned_cols=76 Identities=33% Similarity=0.487 Sum_probs=73.7
Q ss_pred CCCCCccccEEEeCCcccCCcCCCCHHHHHHHHHHHHHHHHHHHhhcCCCceEEEEecCCCCCCCcceEEEEEeeC
Q 034378 3 SIEQYAFGPFKIDPRRDAVRFGDLTADETRDLWLTAQTVGTQLESYHKASSLAFAIQDGPQAGQTVPHVHIHIVPR 78 (96)
Q Consensus 3 ~~~p~~~g~~lIiPk~H~~~l~dl~~~e~~~l~~~~~~v~~~l~~~~~~~~~~i~~~~~~~~gq~v~H~HiHiiPr 78 (96)
+..|..|||++|+||+|++++.||+++|+.+|+.+++++.+++++.+++++||+++|+++.+||+++|+|+||+||
T Consensus 28 ~~~~~~pg~~lI~Pk~H~~~~~~l~~~e~~~l~~~~~~v~~~l~~~~~~~~~n~~~~~~~~~g~~~~H~HiHiiPR 103 (103)
T cd01277 28 DINPASKGHTLVIPKKHYENLLDLDPEELAELILAAKKVARALKKALKADGLNILQNNGRAAGQVVFHVHVHVIPR 103 (103)
T ss_pred CCCCCCCeeEEEEeccccCChhhCCHHHHHHHHHHHHHHHHHHHHhcCCCceEEEEeCCcccCcccCEEEEEEccC
Confidence 5678999999999999999999999999999999999999999999999999999999999999999999999998
This subgroup includes members from all three forms of cellular life. Although the biochemical function has not been characterised for many of the members of this subgroup, the proteins from Yeast have been shown to be involved in secretion, peroxisome formation and gene expression.
>cd00468 HIT_like HIT family: HIT (Histidine triad) proteins, named for a motif related to the sequence HxHxH/Qxx (x, a hydrophobic amino acid), are a superfamily of nucleotide hydrolases and transferases, which act on the alpha-phosphate of ribonucleotides
Back Show alignment and domain information
Probab=99.93 E-value=3.9e-25 Score=130.48 Aligned_cols=75 Identities=37% Similarity=0.581 Sum_probs=73.0
Q ss_pred CCCCCccccEEEeCCcccCCcCCCCHHHHHHHHHHHHHHHHHHHhhcCCCceEEEEecCCCCCCCcceEEEEEee
Q 034378 3 SIEQYAFGPFKIDPRRDAVRFGDLTADETRDLWLTAQTVGTQLESYHKASSLAFAIQDGPQAGQTVPHVHIHIVP 77 (96)
Q Consensus 3 ~~~p~~~g~~lIiPk~H~~~l~dl~~~e~~~l~~~~~~v~~~l~~~~~~~~~~i~~~~~~~~gq~v~H~HiHiiP 77 (96)
+.+|.++||+||+||+|+.++.+|+++++.+++.+++++.+++++.++.+++|+.+|+|+.+||+++|+|+||+|
T Consensus 12 ~~~p~~~gh~lIipk~H~~~~~~l~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~n~g~~~g~~v~H~H~hiiP 86 (86)
T cd00468 12 NLKPAAPGHVLVCPKRHVETLPDLDEALLADLVITAQRVAAELEKHGNVPSLTVFVNDGAAAGQSVPHVHLHVLP 86 (86)
T ss_pred CCCCCCCCcEEEeCchhhCChhHCCHHHHHHHHHHHHHHHHHHHHhcCCCceEEEEcCCccCCCcCCEEEEEeCC
Confidence 578999999999999999999999999999999999999999999999999999999999999999999999998
On the basis of sequence, substrate specificity, structure, evolution and mechanism, HIT proteins are classified in the literacture into three major branches: the Hint branch, which consists of adenosine 5' -monophosphoramide hydrolases, the Fhit branch, that consists of diadenosine polyphosphate hydrolases, and the GalT branch consisting of specific nucloside monophosphate transferases. Further sequence analysis reveals several new closely related, yet uncharacterized subgroups.
>PRK10687 purine nucleoside phosphoramidase; Provisional
Back Show alignment and domain information
Probab=99.92 E-value=3.1e-25 Score=139.34 Aligned_cols=80 Identities=18% Similarity=0.196 Sum_probs=71.9
Q ss_pred CCCCCccccEEEeCCcccCCcCCCCHHHHHHHHHHHHHHHHHHH-hhcCCCceEEEEecCCCCCCCcceEEEEEeeCCCC
Q 034378 3 SIEQYAFGPFKIDPRRDAVRFGDLTADETRDLWLTAQTVGTQLE-SYHKASSLAFAIQDGPQAGQTVPHVHIHIVPRKAA 81 (96)
Q Consensus 3 ~~~p~~~g~~lIiPk~H~~~l~dl~~~e~~~l~~~~~~v~~~l~-~~~~~~~~~i~~~~~~~~gq~v~H~HiHiiPr~~~ 81 (96)
...|.++||+||+||+|+.++.||+++++.+++.+++.+.+.++ +.+++++||+++|+|+.+||+|+|+|+||+||+..
T Consensus 31 D~~P~~~GH~LViPK~H~~~l~dl~~~~~~~l~~l~~~~~~~~~~~~~~~~g~~l~~n~G~~agQ~V~HlHiHvI~g~~~ 110 (119)
T PRK10687 31 DISPQAPTHILIIPNILIPTVNDVSAEHEQALGRMITVAAKIAEQEGIAEDGYRLIMNTNRHGGQEVYHIHMHLLGGRPL 110 (119)
T ss_pred cCCCCCCccEEEEehhHhCChhHCChHHHHHHHHHHHHHHHHHHHhCCCCCceEEEEeCCCcCCcccCEEEEEECCCccc
Confidence 46899999999999999999999999999999888887777665 44788999999999999999999999999999874
Q ss_pred C
Q 034378 82 S 82 (96)
Q Consensus 82 d 82 (96)
+
T Consensus 111 ~ 111 (119)
T PRK10687 111 G 111 (119)
T ss_pred C
Confidence 3
>cd01276 PKCI_related Protein Kinase C Interacting protein related (PKCI): PKCI and related proteins belong to the ubiquitous HIT family of hydrolases that act on alpha-phosphates of ribonucleotides
Back Show alignment and domain information
Probab=99.90 E-value=1.3e-23 Score=128.24 Aligned_cols=75 Identities=19% Similarity=0.259 Sum_probs=67.3
Q ss_pred CCCCCccccEEEeCCcccCCcCCCCHHHHHHHHHHHHHHHHHHHhhcC--CCceEEEEecCCCCCCCcceEEEEEeeC
Q 034378 3 SIEQYAFGPFKIDPRRDAVRFGDLTADETRDLWLTAQTVGTQLESYHK--ASSLAFAIQDGPQAGQTVPHVHIHIVPR 78 (96)
Q Consensus 3 ~~~p~~~g~~lIiPk~H~~~l~dl~~~e~~~l~~~~~~v~~~l~~~~~--~~~~~i~~~~~~~~gq~v~H~HiHiiPr 78 (96)
+..|.+|||+||+||+|+.++.||+++++.++..+++.+ +++.+.++ +++||+++|+|+.+||+++|+|+|||+|
T Consensus 28 ~~~p~~~gh~lIiPk~H~~~~~dl~~~~~~~l~~~~~~~-~~~~~~~~~~~~~~n~~~~~g~~~g~~v~H~HiHii~~ 104 (104)
T cd01276 28 DINPQAPVHILVIPKKHIASLSDATEEDEELLGHLLSAA-AKVAKDLGIAEDGYRLVINCGKDGGQEVFHLHLHLLGG 104 (104)
T ss_pred CCCCCCCCEEEEEecceeCChHHcccccHHHHHHHHHHH-HHHHHHhCCCCCCEEEEEeCCCCCCCceeEEEEEEeCC
Confidence 578999999999999999999999999998888888877 55555566 6899999999999999999999999986
The members of this subgroup have a conserved HxHxHxx motif (x is a hydrophobic residue) that is a signature for this family. No enzymatic activity has been reported however, for PKCI and its related members.
>PLN02643 ADP-glucose phosphorylase
Back Show alignment and domain information
Probab=99.86 E-value=2.3e-21 Score=139.64 Aligned_cols=90 Identities=18% Similarity=0.179 Sum_probs=80.8
Q ss_pred CCCCCccccEEEeCCcccCCcCCCCHHHHHHHHHHHHHHHHHHHhhcCCCceEEEEecCCCC--CCC--cceEEEEEeeC
Q 034378 3 SIEQYAFGPFKIDPRRDAVRFGDLTADETRDLWLTAQTVGTQLESYHKASSLAFAIQDGPQA--GQT--VPHVHIHIVPR 78 (96)
Q Consensus 3 ~~~p~~~g~~lIiPk~H~~~l~dl~~~e~~~l~~~~~~v~~~l~~~~~~~~~~i~~~~~~~~--gq~--v~H~HiHiiPr 78 (96)
+..|..|||+||+||+|+.++.||+++|+.+|+.+++++++++++.++..+||+++|+++.. ++. .+|||+||+||
T Consensus 223 p~ap~~P~evlIiPKrH~~~~~dl~~~e~~~La~ilk~v~~~l~~~~~~~pyN~~~~~~P~~~~~~~~~~~H~hihi~PR 302 (336)
T PLN02643 223 PFAATFPFEIWIIPRDHSSNFHEIDDDKAVDLGGLLKLMLQKISKQLNDPPYNYMIQTSPLGVEESNLPYTHWFLQIVPQ 302 (336)
T ss_pred ccccCCCCEEEEEeccccCChhhCCHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeecCCCccccCcccceEEEEEEecC
Confidence 45688899999999999999999999999999999999999999999999999999999973 453 46777899999
Q ss_pred CC--CCCCCCCCcccc
Q 034378 79 KA--ASSEENDGNVSW 92 (96)
Q Consensus 79 ~~--~d~~~~~~~~~~ 92 (96)
.+ ++||.|+|+|+=
T Consensus 303 l~~~aGfElg~g~~in 318 (336)
T PLN02643 303 LSGVGGFELGTGCYIN 318 (336)
T ss_pred cCCccceeccCCCeeC
Confidence 76 789999998873
>TIGR00209 galT_1 galactose-1-phosphate uridylyltransferase, family 1
Back Show alignment and domain information
Probab=99.85 E-value=3.3e-21 Score=139.36 Aligned_cols=90 Identities=19% Similarity=0.221 Sum_probs=80.3
Q ss_pred CCCCCccccEEEeCCcccCCcCCCCHHHHHHHHHHHHHHHHHHHhhcCCC-ceEEEEecCCCCCC--CcceEEEEEeeCC
Q 034378 3 SIEQYAFGPFKIDPRRDAVRFGDLTADETRDLWLTAQTVGTQLESYHKAS-SLAFAIQDGPQAGQ--TVPHVHIHIVPRK 79 (96)
Q Consensus 3 ~~~p~~~g~~lIiPk~H~~~l~dl~~~e~~~l~~~~~~v~~~l~~~~~~~-~~~i~~~~~~~~gq--~v~H~HiHiiPr~ 79 (96)
+..|..|||+||+||+|+.++.||+++++.+|+.+++++++++++.|+.+ +||+++|+++..|+ ..+|||+||+||+
T Consensus 224 p~~p~~Pgh~lIiPKrH~~~~~dl~d~e~~~La~~lk~v~~~l~~~~~~~~pYn~~~h~~p~~~~~~~~~H~HihiiPrl 303 (347)
T TIGR00209 224 PYWAIWPFETLLLPKAHVLRITDLTDAQRSDLALILKKLTSKYDNLFETSFPYSMGWHGAPFNGEENQHWQLHAHFYPPL 303 (347)
T ss_pred ccCCCCCCeEEEeeccCCCChhhCCHHHHHHHHHHHHHHHHHHHHHhCCCCCcceeEEecccCCCCCcEEEEEEEEeCCc
Confidence 46789999999999999999999999999999999999999999999766 99999999998775 4578999999994
Q ss_pred ---------CCCCCCCCCccccc
Q 034378 80 ---------AASSEENDGNVSWD 93 (96)
Q Consensus 80 ---------~~d~~~~~~~~~~~ 93 (96)
..+||. +|+|+=|
T Consensus 304 ~R~~~~~k~~aGfE~-~g~~in~ 325 (347)
T TIGR00209 304 LRSATVRKFMVGYEM-LGETQRD 325 (347)
T ss_pred ccccccccceeehhh-hcCccCC
Confidence 378888 8888633
This enzyme is involved in glucose and galactose interconversion. This model describes one of two extremely distantly related branches of the model pfam01087 from PFAM.
>KOG3275 consensus Zinc-binding protein of the histidine triad (HIT) family [Signal transduction mechanisms]
Back Show alignment and domain information
Probab=99.85 E-value=4.8e-21 Score=118.31 Aligned_cols=77 Identities=22% Similarity=0.298 Sum_probs=67.8
Q ss_pred CCCCccccEEEeCCcc---cCCcCCCCHHHHHHHHHHHHHHHHHHHhhcCCCceEEEEecCCCCCCCcceEEEEEeeCCC
Q 034378 4 IEQYAFGPFKIDPRRD---AVRFGDLTADETRDLWLTAQTVGTQLESYHKASSLAFAIQDGPQAGQTVPHVHIHIVPRKA 80 (96)
Q Consensus 4 ~~p~~~g~~lIiPk~H---~~~l~dl~~~e~~~l~~~~~~v~~~l~~~~~~~~~~i~~~~~~~~gq~v~H~HiHiiPr~~ 80 (96)
+.|.+|||+|||||+| .+...|.+++.+.+++.+.+++++++.- .++||+++|+|+.++|+|+|+|+||+|++.
T Consensus 45 i~Pqap~HfLvIPK~hi~~~s~aed~~~e~Lg~ll~~~k~vak~~Gl---~~gYrvv~NnG~~g~QsV~HvH~HvlgGrq 121 (127)
T KOG3275|consen 45 IAPQAPGHFLVIPKKHITQLSKAEDRDDELLGHLLPVAKKVAKALGL---EDGYRVVQNNGKDGHQSVYHVHLHVLGGRQ 121 (127)
T ss_pred cCCCCCceEEEeecccccchhhcccCCHHHHHHHHHHHHHHHHHhCc---ccceeEEEcCCcccceEEEEEEEEEeCCcc
Confidence 6799999999999999 5666788888999999999999888753 457999999999999999999999999777
Q ss_pred CCC
Q 034378 81 ASS 83 (96)
Q Consensus 81 ~d~ 83 (96)
..+
T Consensus 122 m~W 124 (127)
T KOG3275|consen 122 MQW 124 (127)
T ss_pred cCC
Confidence 654
>PRK11720 galactose-1-phosphate uridylyltransferase; Provisional
Back Show alignment and domain information
Probab=99.84 E-value=8.2e-21 Score=137.26 Aligned_cols=88 Identities=17% Similarity=0.190 Sum_probs=78.4
Q ss_pred CCCCCccccEEEeCCcccCCcCCCCHHHHHHHHHHHHHHHHHHHhhcCCC-ceEEEEecCCCCC--CCcceEEEEEeeCC
Q 034378 3 SIEQYAFGPFKIDPRRDAVRFGDLTADETRDLWLTAQTVGTQLESYHKAS-SLAFAIQDGPQAG--QTVPHVHIHIVPRK 79 (96)
Q Consensus 3 ~~~p~~~g~~lIiPk~H~~~l~dl~~~e~~~l~~~~~~v~~~l~~~~~~~-~~~i~~~~~~~~g--q~v~H~HiHiiPr~ 79 (96)
+..|..|||+||+||+|+.++.||+++++.+|+.+++++++++++.|+.+ +||+++|+++..| |.++|||+||+||+
T Consensus 224 p~~p~~P~h~lIiPKrH~~~~~dl~dee~~~La~~lk~v~~~l~~~~~~~~pyn~~~h~~p~~~~~~~~~H~HihiiPrl 303 (346)
T PRK11720 224 PYWAAWPFETLLLPKAHVLRLTDLTDAQRDDLALALKKLTSRYDNLFQCSFPYSMGWHGAPFNGEENDHWQLHAHFYPPL 303 (346)
T ss_pred ccccCCCCeEEEecccCCCChhhCCHHHHHHHHHHHHHHHHHHHHHhCCCCCCceeEEecccCCCCCeeEEEEEEEeCCc
Confidence 35688999999999999999999999999999999999999999999766 7999999998654 57899999999995
Q ss_pred ---------CCCCCCCCCccc
Q 034378 80 ---------AASSEENDGNVS 91 (96)
Q Consensus 80 ---------~~d~~~~~~~~~ 91 (96)
..+||. +|.|+
T Consensus 304 ~Rs~~~~k~~aGfE~-~g~~i 323 (346)
T PRK11720 304 LRSATVRKFMVGYEM-LAETQ 323 (346)
T ss_pred cCccccccceeeeec-ccCcc
Confidence 267888 77776
>cd01278 aprataxin_related aprataxin related: Aprataxin, a HINT family hydrolase is mutated in ataxia oculomotor apraxia syndrome
Back Show alignment and domain information
Probab=99.83 E-value=2.6e-20 Score=113.84 Aligned_cols=72 Identities=19% Similarity=0.282 Sum_probs=65.9
Q ss_pred CCCCCccccEEEeCCcccCCcCCCCHHHHHHHHHHHHHHHHHHHhh--cCCCceEEEEecCCCCCCCcceEEEEEe
Q 034378 3 SIEQYAFGPFKIDPRRDAVRFGDLTADETRDLWLTAQTVGTQLESY--HKASSLAFAIQDGPQAGQTVPHVHIHIV 76 (96)
Q Consensus 3 ~~~p~~~g~~lIiPk~H~~~l~dl~~~e~~~l~~~~~~v~~~l~~~--~~~~~~~i~~~~~~~~gq~v~H~HiHii 76 (96)
+..|.+|||+||+||+|+.++.+|+++++.+++.+++.+.+.+++. +++++||+++|.++. |+|+|+|+|||
T Consensus 30 ~~~p~~~~h~lIiPk~h~~~~~~l~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~n~g~h~~p~--~~v~H~H~Hvi 103 (104)
T cd01278 30 DIYPKARHHYLVIPKEHIASLKALTKEDVPLLEHMETVGREKLLRSDNTDPSEFRFGFHAPPF--TSVSHLHLHVI 103 (104)
T ss_pred CCCCCCCceEEEEecCCCCChHHCCHhHHHHHHHHHHHHHHHHHHHcCCCccCeEEEeCCCCC--cCeeeEEEEee
Confidence 4679999999999999999999999999999999999998878775 577899999999886 89999999997
All the members of this subgroup have the conserved HxHxHxx (where x is a hydrophobic residue) signature motif. Members of this subgroup are predominantly eukaryotic in origin.
>cd00608 GalT Galactose-1-phosphate uridyl transferase (GalT): This enzyme plays a key role in galactose metabolism by catalysing the transfer of a uridine 5'-phosphoryl group from UDP-galactose 1-phosphate
Back Show alignment and domain information
Probab=99.83 E-value=2.4e-20 Score=134.05 Aligned_cols=90 Identities=23% Similarity=0.274 Sum_probs=79.1
Q ss_pred CCCCCccccEEEeCCcccCCcCCCCHHHHHHHHHHHHHHHHHHHhhcC-CCceEEEEecCCCCC----CCcceEEEEEee
Q 034378 3 SIEQYAFGPFKIDPRRDAVRFGDLTADETRDLWLTAQTVGTQLESYHK-ASSLAFAIQDGPQAG----QTVPHVHIHIVP 77 (96)
Q Consensus 3 ~~~p~~~g~~lIiPk~H~~~l~dl~~~e~~~l~~~~~~v~~~l~~~~~-~~~~~i~~~~~~~~g----q~v~H~HiHiiP 77 (96)
+..|..|||++|+||+|+.++.||+++|+.+|+.+++++++++++.++ ..+||+++|+++..| +.++|+|+||+|
T Consensus 214 p~~~~~P~e~lIiPKrH~~~~~dl~~~e~~~La~~l~~v~~~l~~~~~~~~pyn~~~h~~P~~~~~~~~~~~H~Hihi~P 293 (329)
T cd00608 214 PFWARWPFEVHILPKRHVSRFTDLTDEEREDLAEILKRLLARYDNLFNCSFPYSMGWHQAPTGGKELENWYYHWHFEIPP 293 (329)
T ss_pred ecCCCCCcEEEEecCCCcCChhHCCHHHHHHHHHHHHHHHHHHHHHhCCCCCeEEEEeccCCCCCcCCcceEEEEEEeCC
Confidence 346788999999999999999999999999999999999999999999 558999999998764 688999999999
Q ss_pred CCC-------CCCCCCCCcccc
Q 034378 78 RKA-------ASSEENDGNVSW 92 (96)
Q Consensus 78 r~~-------~d~~~~~~~~~~ 92 (96)
|+. .++|.++|.++-
T Consensus 294 r~~~~~~~~~aGfE~~~g~~in 315 (329)
T cd00608 294 RRSATVLKFMAGFELGAGEFIN 315 (329)
T ss_pred CcCCCceeeeEEeeccCCCccC
Confidence 953 567777777653
The structure of E.coli GalT reveals that the enzyme contains two identical subunits. It also demonstrates that the active site is formed by amino acid residues from both subunits of the dimer.
>PF02744 GalP_UDP_tr_C: Galactose-1-phosphate uridyl transferase, C-terminal domain; InterPro: IPR005850 Galactose-1-phosphate uridyl transferase catalyses the conversion of UDP-glucose and alpha-D-galactose 1-phosphate to alpha-D-glucose 1-phosphate and UDP-galactose during galactose metabolism
Back Show alignment and domain information
Probab=99.31 E-value=1.6e-11 Score=81.09 Aligned_cols=69 Identities=20% Similarity=0.228 Sum_probs=48.5
Q ss_pred CccccEEEeCCcccCCcCCCCHHHHHHHHHHHHHHHHHHHhhcCC-CceEEEEecCCCCCCCc---ceEEEEE
Q 034378 7 YAFGPFKIDPRRDAVRFGDLTADETRDLWLTAQTVGTQLESYHKA-SSLAFAIQDGPQAGQTV---PHVHIHI 75 (96)
Q Consensus 7 ~~~g~~lIiPk~H~~~l~dl~~~e~~~l~~~~~~v~~~l~~~~~~-~~~~i~~~~~~~~gq~v---~H~HiHi 75 (96)
..|.+++|+||+|+.++.+++++|..+|+.+++.+++++++.|+. ..|++++|+.|..+..- +|+|+.+
T Consensus 47 ~wP~ev~ilpkrh~~~l~~l~~~E~~dlA~~l~~i~~r~d~lf~~~~pY~m~ihqaP~~~~~~~~~fH~H~e~ 119 (166)
T PF02744_consen 47 RWPFEVWILPKRHVPSLADLTDEERDDLAAILKPILRRYDNLFETSFPYNMGIHQAPVNGEDPEHWFHPHFEP 119 (166)
T ss_dssp -STT-EEEEESS--SSGGG--HHHHHHHHHHHHHHHHHHHHHCTS---EEEEEE---SSSS--TT--EEEEE-
T ss_pred cCCcEEEEecCCChhhHHHhhhHHHhhHHHHHHHHHHHhcccCCCCCCCchhhhcCCCCcccchhhhhccccc
Confidence 348999999999999999999999999999999999999999985 49999999999765443 4555544
The enzyme is present in prokaryotes and eukaryotes. Defects in GalT in humans is the cause of galactosemia, an inherited disorder of galactose metabolism that leads to jaundice, cataracts and mental retardation. This domain describes the C-terminal of Galactose-1-phosphate uridyl transferase. SCOP reports fold duplication of the C-terminal with the N-terminal domain. Both are involved in Zn and Fe binding; GO: 0008108 UDP-glucose:hexose-1-phosphate uridylyltransferase activity, 0006012 galactose metabolic process; PDB: 1GUP_C 1HXP_A 1HXQ_A 1GUQ_C.
>KOG2958 consensus Galactose-1-phosphate uridylyltransferase [Energy production and conversion]
Back Show alignment and domain information
Probab=99.25 E-value=6.7e-12 Score=88.58 Aligned_cols=89 Identities=19% Similarity=0.149 Sum_probs=74.9
Q ss_pred CccccEEEeCCcccCCcCCCCHHHHHHHHHHHHHHHHHHHhhcCC-CceEEEEecCCCCC--CCc-ceE-EEEEee---C
Q 034378 7 YAFGPFKIDPRRDAVRFGDLTADETRDLWLTAQTVGTQLESYHKA-SSLAFAIQDGPQAG--QTV-PHV-HIHIVP---R 78 (96)
Q Consensus 7 ~~~g~~lIiPk~H~~~l~dl~~~e~~~l~~~~~~v~~~l~~~~~~-~~~~i~~~~~~~~g--q~v-~H~-HiHiiP---r 78 (96)
.-|.++|+|||||+++|.+|++.+..+|+.+++.++.+.++.|+. ..|+++++..|.++ +.. .|| |+|++| |
T Consensus 233 ~wPfEtllipk~h~~~~~~l~~~~k~dLasiLK~ll~KydnlfetsfPYsmg~h~aPl~~t~~e~~n~W~h~hFyppllr 312 (354)
T KOG2958|consen 233 TWPFETLLIPKRHVSRFHELDEVEKVDLASILKLLLIKYDNLFETSFPYSMGIHGAPLGSTEQENYNHWLHMHFYPPLLR 312 (354)
T ss_pred cCcceeeeechhhhhhhcccchHHHhhHHHHHHHHHHHHHHhhccCCccccccccCCcccccccccchhhhhhccccchh
Confidence 348899999999999999999999999999999999999999998 48999999998653 333 354 888886 4
Q ss_pred CC--CCCCCCCCccccccC
Q 034378 79 KA--ASSEENDGNVSWDFF 95 (96)
Q Consensus 79 ~~--~d~~~~~~~~~~~~~ 95 (96)
.. +.|..|.+.++=|++
T Consensus 313 satV~kF~vG~e~l~epqr 331 (354)
T KOG2958|consen 313 SATVRKFLVGYEMLAEPQR 331 (354)
T ss_pred hccccceeechhhhcCccc
Confidence 43 688889888887753
>PF11969 DcpS_C: Scavenger mRNA decapping enzyme C-term binding; PDB: 1VLR_B 1XMM_D 1XML_B 1ST0_A 3BLA_B 3BL9_B 3BL7_B 1ST4_B 1XQU_B
Back Show alignment and domain information
Probab=99.25 E-value=2.1e-11 Score=76.11 Aligned_cols=72 Identities=18% Similarity=0.221 Sum_probs=52.2
Q ss_pred CCCCCccccEEEeCCc-ccCCcCCCCHHHHHHHHHHHHHHHHHHHhhcC----CCceEEEEecCCCCCCCcceEEEEEee
Q 034378 3 SIEQYAFGPFKIDPRR-DAVRFGDLTADETRDLWLTAQTVGTQLESYHK----ASSLAFAIQDGPQAGQTVPHVHIHIVP 77 (96)
Q Consensus 3 ~~~p~~~g~~lIiPk~-H~~~l~dl~~~e~~~l~~~~~~v~~~l~~~~~----~~~~~i~~~~~~~~gq~v~H~HiHiiP 77 (96)
..+|.++.|+|||||+ |+.++.+|+.+.+.-|..+.+...+.+++... ...++++++..| +++|+|+|++.
T Consensus 28 D~~P~a~~H~LviPk~~~i~sl~~L~~~~~~lL~~m~~~~~~~~~~~~~~~~~~~~~~~gfH~~P----S~~HLHlHvi~ 103 (116)
T PF11969_consen 28 DIYPKAPVHLLVIPKDPHIRSLRDLTPEHLPLLERMREVARELLKEEYPGDLDSDDIRLGFHYPP----SVYHLHLHVIS 103 (116)
T ss_dssp -TT-SCCEEEEEEESSSS-SSGGG--GGGHHHHHHHHHHHHHHHHHHH-TT-EGGGEEEEEESS-----SSSS-EEEEEE
T ss_pred CCCCCcCcEEEEEeecCCCCChHHcCHHHHHHHHHHHHHHHHHHHHhcccccchhhhcccccCCC----CcceEEEEEcc
Confidence 4678999999999999 99999999988777666666666666665552 457899998665 79999999997
Q ss_pred C
Q 034378 78 R 78 (96)
Q Consensus 78 r 78 (96)
.
T Consensus 104 ~ 104 (116)
T PF11969_consen 104 P 104 (116)
T ss_dssp T
T ss_pred C
Confidence 4
>COG1085 GalT Galactose-1-phosphate uridylyltransferase [Energy production and conversion]
Back Show alignment and domain information
Probab=99.21 E-value=6.7e-11 Score=85.27 Aligned_cols=86 Identities=21% Similarity=0.231 Sum_probs=72.3
Q ss_pred CCccccEEEeCCcccCCcCCCCHHHHHHHHHHHHHHHHHHHhhcCCC-ceEEEEecCCCC-CCCcceEEEEEee---CCC
Q 034378 6 QYAFGPFKIDPRRDAVRFGDLTADETRDLWLTAQTVGTQLESYHKAS-SLAFAIQDGPQA-GQTVPHVHIHIVP---RKA 80 (96)
Q Consensus 6 p~~~g~~lIiPk~H~~~l~dl~~~e~~~l~~~~~~v~~~l~~~~~~~-~~~i~~~~~~~~-gq~v~H~HiHiiP---r~~ 80 (96)
+..|.+++|+||+|+..+.||+++|..+|+.+++.+.+++++.++.. .|++++++.+.. .+.-+|+|+|++| |..
T Consensus 218 a~~pfEv~i~pk~hv~~l~~~sdee~~~lA~ilk~~~~~y~~~~~~~fpY~m~~h~ap~~~~~~~~~~h~~~~p~~~R~~ 297 (338)
T COG1085 218 ARWPFEVLIYPKEHVSFLTDLSDEELKDLAEILKKLLARYDNLFGNSFPYSMGFHQAPFNEVNEHYHLHAEIYPPLLRSA 297 (338)
T ss_pred ccCceEEEeccHHHhhhhhhCCHHHHHHHHHHHHHHHHHHhhccCCCCceeeeeecCCCCcccccceEEEEEcccccccc
Confidence 34588999999999999999999999999999999999999999887 899999998754 3556899999999 543
Q ss_pred ------CCCCCCCCccc
Q 034378 81 ------ASSEENDGNVS 91 (96)
Q Consensus 81 ------~d~~~~~~~~~ 91 (96)
.+++.+++.++
T Consensus 298 t~~k~~~g~e~~~~e~~ 314 (338)
T COG1085 298 TKLKFLAGYEMGAGEFI 314 (338)
T ss_pred cccceeeeeecccceee
Confidence 35666665443
>PF04677 CwfJ_C_1: Protein similar to CwfJ C-terminus 1; InterPro: IPR006768 This group of sequences contain a conserved C-terminal domain which is found in the Schizosaccharomyces pombe (Fission yeast) protein Cwf19 (Q09909 from SWISSPROT) and its homologues
Back Show alignment and domain information
Probab=99.02 E-value=4.2e-09 Score=66.31 Aligned_cols=73 Identities=16% Similarity=0.230 Sum_probs=55.2
Q ss_pred CCCCCCCccccEEEeCCcccCCcCCCCHHHHHHHHHHHHHHHHHHHhhcCCCceEEEEecCCCCCCCcceEEEEEeeCCC
Q 034378 1 MSSIEQYAFGPFKIDPRRDAVRFGDLTADETRDLWLTAQTVGTQLESYHKASSLAFAIQDGPQAGQTVPHVHIHIVPRKA 80 (96)
Q Consensus 1 ~~~~~p~~~g~~lIiPk~H~~~l~dl~~~e~~~l~~~~~~v~~~l~~~~~~~~~~i~~~~~~~~gq~v~H~HiHiiPr~~ 80 (96)
||. .|+.+||++|+|-.|+.++.+++++.+.|+.+.-+.+.+...+ .|.+-+-+-.. .....|+|++++|-..
T Consensus 38 lpk-g~L~~gH~lIvPi~H~~s~~~~de~~~~Ei~~f~~~L~~mf~~-~~~~vvf~E~~-----~~~~~H~~iq~vPvp~ 110 (121)
T PF04677_consen 38 LPK-GPLVPGHCLIVPIQHVPSLTELDEEVWEEIRNFQKSLRKMFAS-QGKDVVFFERV-----RKRNPHTHIQCVPVPK 110 (121)
T ss_pred eCC-CCccCCEEEEEecceecccccCCHHHHHHHHHHHHHHHHHHHH-cCCCEEEEEEe-----CCCCcEEEEEEEEcCH
Confidence 355 8999999999999999999999999999999877777776655 24332222221 3446899999999543
Cwf19 is part of the Cdc5p complex involved in mRNA splicing []. This domain is found in association with IPR006767 from INTERPRO, which is generally C-terminal and adjacent to this domain.
>KOG4359 consensus Protein kinase C inhibitor-like protein [General function prediction only]
Back Show alignment and domain information
Probab=99.00 E-value=1.6e-09 Score=69.34 Aligned_cols=88 Identities=17% Similarity=0.170 Sum_probs=61.3
Q ss_pred CCCCCccccEEEeCCcccCCcCCCCHHHHHHHHHHHHHHHHHHHhhc--CCCceEEEEecCCCCCCCcceEEEEEe-eCC
Q 034378 3 SIEQYAFGPFKIDPRRDAVRFGDLTADETRDLWLTAQTVGTQLESYH--KASSLAFAIQDGPQAGQTVPHVHIHIV-PRK 79 (96)
Q Consensus 3 ~~~p~~~g~~lIiPk~H~~~l~dl~~~e~~~l~~~~~~v~~~l~~~~--~~~~~~i~~~~~~~~gq~v~H~HiHii-Pr~ 79 (96)
.++|.+..|.|++||+|+.+..+|+.++..-+-+..+.-...+.+.. ..+...+++|..|. .+|.|+|+|+| |-.
T Consensus 61 DikPaA~~HYLvipK~Hi~~~~~L~k~~V~Lve~m~~~G~~~l~r~~~td~~~~r~GFHLPPf--~SV~HLHlH~I~P~~ 138 (166)
T KOG4359|consen 61 DIKPAATHHYLVVPKKHIGNCRTLRKDQVELVENMVTVGKTILERNNFTDFTNVRMGFHLPPF--CSVSHLHLHVIAPVD 138 (166)
T ss_pred cCCccccceEEEechHHcCChhhcchhhHHHHHHHHHHHHHHHHHhccCCchheeEeccCCCc--ceeeeeeEeeecchH
Confidence 46899999999999999999999999875544434443333444433 34467788888764 67999999987 665
Q ss_pred CCCCCCCCCcccccc
Q 034378 80 AASSEENDGNVSWDF 94 (96)
Q Consensus 80 ~~d~~~~~~~~~~~~ 94 (96)
.++| ++.+.-.|.
T Consensus 139 DMgf--~sKl~FrPs 151 (166)
T KOG4359|consen 139 DMGF--LSKLVFRPS 151 (166)
T ss_pred Hhch--hheeEeecc
Confidence 5655 334443343
>KOG2476 consensus Uncharacterized conserved protein [Function unknown]
Back Show alignment and domain information
Probab=97.96 E-value=6.5e-05 Score=56.48 Aligned_cols=72 Identities=13% Similarity=0.144 Sum_probs=49.3
Q ss_pred CCCCCccccEEEeCCcccCCcCCCCHHHHHHHHHHHHHHHHHHHhhcCCCceEEEEecCCCCCCCcceEEEEEeeCCC
Q 034378 3 SIEQYAFGPFKIDPRRDAVRFGDLTADETRDLWLTAQTVGTQLESYHKASSLAFAIQDGPQAGQTVPHVHIHIVPRKA 80 (96)
Q Consensus 3 ~~~p~~~g~~lIiPk~H~~~l~dl~~~e~~~l~~~~~~v~~~l~~~~~~~~~~i~~~~~~~~gq~v~H~HiHiiPr~~ 80 (96)
+..|++.+|+||||-.|+.++..|+++.+.++-+--..+.+. .+.+|.+.+.+-... .-.-|+|+.+||--.
T Consensus 347 aKGpLs~~HvlIipi~H~p~~~~ls~ev~~Ei~kykaal~~m-yk~~g~~~vvfE~~~-----~rs~Hlq~Qvipvpk 418 (528)
T KOG2476|consen 347 AKGPLSSDHVLIIPIEHIPSLVPLSAEVTQEINKYKAALRKM-YKKQGKDAVVFERQS-----YRSVHLQLQVIPVPK 418 (528)
T ss_pred cCCCCCCCeEEEEEcccccccccCCHHHHHHHHHHHHHHHHH-HHhcCCeEEEEEeec-----ccceeeEEEEEeccc
Confidence 468999999999999999999999987776665544444333 333444443333311 224599999999643
>PLN03103 GDP-L-galactose-hexose-1-phosphate guanyltransferase; Provisional
Back Show alignment and domain information
Probab=97.42 E-value=0.00063 Score=50.58 Aligned_cols=64 Identities=16% Similarity=0.167 Sum_probs=39.5
Q ss_pred CCCCCccccEEEeCCc--ccCCcCCCCHHHHHHHHHHHHHHHHHHHhhcCCCceEEEEecCCCCCCCcceEEEEEee
Q 034378 3 SIEQYAFGPFKIDPRR--DAVRFGDLTADETRDLWLTAQTVGTQLESYHKASSLAFAIQDGPQAGQTVPHVHIHIVP 77 (96)
Q Consensus 3 ~~~p~~~g~~lIiPk~--H~~~l~dl~~~e~~~l~~~~~~v~~~l~~~~~~~~~~i~~~~~~~~gq~v~H~HiHiiP 77 (96)
+..|+.+||++++|.. |.... ++.+-+ .++-.++. ..+..+|.++.|. ..+..++.|+|+|..-
T Consensus 176 NvsPI~~gH~LlvP~~~~~lPQ~--i~~~~l----~la~~~a~----~~~~p~frvgYNS-lGA~ASvNHLHFQa~y 241 (403)
T PLN03103 176 NVSPIEYGHVLLVPRVLDCLPQR--IDPDSF----LLALYMAA----EANNPYFRVGYNS-LGAFATINHLHFQAYY 241 (403)
T ss_pred eCCCCccCeEEEcCCcccCCCeE--ecHHHH----HHHHHHHH----hcCCCcEEEEecC-CccccCcceeeeeecc
Confidence 4679999999999854 55443 333222 12222221 1234668888876 4455689999999764
>KOG2477 consensus Uncharacterized conserved protein [Function unknown]
Back Show alignment and domain information
Probab=97.32 E-value=0.0016 Score=49.69 Aligned_cols=76 Identities=18% Similarity=0.244 Sum_probs=54.3
Q ss_pred CCCCCCCccccEEEeCCcccCCcCCCCHHHHHHHHHHHHHHHHHHHhhcCCCceEEEEecCCCCCCCcceEEEEEeeCCC
Q 034378 1 MSSIEQYAFGPFKIDPRRDAVRFGDLTADETRDLWLTAQTVGTQLESYHKASSLAFAIQDGPQAGQTVPHVHIHIVPRKA 80 (96)
Q Consensus 1 ~~~~~p~~~g~~lIiPk~H~~~l~dl~~~e~~~l~~~~~~v~~~l~~~~~~~~~~i~~~~~~~~gq~v~H~HiHiiPr~~ 80 (96)
+|+-.++..||++|+|-.|..+-..|+++.|.++-+..+-++...... +-+ +.+. -+.+ .=+.-+|+-||.||..+
T Consensus 434 Lp~~~gL~~gHciIvptqH~~~t~slDEdvWDEIrnfrKcL~~Mfas~-n~d-viFy-E~a~-~l~rrpH~~IeCIPvpq 509 (628)
T KOG2477|consen 434 LPTQPGLAKGHCIIVPTQHRINTLSLDEDVWDEIRNFRKCLALMFASM-NLD-VIFY-ENAP-SLQRRPHTAIECIPVPQ 509 (628)
T ss_pred ccccCccccCceEEecccccccccccchHHHHHHHHHHHHHHHHHHhc-CCC-eEEE-eccC-ccccCCceeEEEeechH
Confidence 477789999999999999998888999999999887777665555432 222 2221 1111 22447999999999654
>KOG3969 consensus Uncharacterized conserved protein [Function unknown]
Back Show alignment and domain information
Probab=97.32 E-value=0.0025 Score=45.37 Aligned_cols=66 Identities=18% Similarity=0.148 Sum_probs=52.9
Q ss_pred cEEEeCCcc-cCCcCCCCHHHHHHHHHHHHHHHHHHHhhcCCC--ceEEEEecCCCCCCCcceEEEEEeeCCC
Q 034378 11 PFKIDPRRD-AVRFGDLTADETRDLWLTAQTVGTQLESYHKAS--SLAFAIQDGPQAGQTVPHVHIHIVPRKA 80 (96)
Q Consensus 11 ~~lIiPk~H-~~~l~dl~~~e~~~l~~~~~~v~~~l~~~~~~~--~~~i~~~~~~~~gq~v~H~HiHiiPr~~ 80 (96)
+++.|-+|+ +.++-||..+.+.-|.++-+++..++...||.+ -..+.+|-.| +.+|+|+||++-..
T Consensus 190 yllaIvhr~dikSiRDL~~~h~~lL~n~r~k~~~~i~~~y~v~~dqlrmf~HYqP----SyYHlHVHi~nik~ 258 (310)
T KOG3969|consen 190 YLLAIVHRRDIKSIRDLRPSHLQLLRNIRNKSREAIPQRYGVDPDQLRMFFHYQP----SYYHLHVHIVNIKH 258 (310)
T ss_pred eEEEEEecCCcchhhhCCHHHHHHHHHHHHHHHHHHHHHhCCCchhEEEEEEecC----ceEEEEEEEEeccC
Confidence 455555555 999999999999999999999999999888764 5777777544 36899999999543
>cd00608 GalT Galactose-1-phosphate uridyl transferase (GalT): This enzyme plays a key role in galactose metabolism by catalysing the transfer of a uridine 5'-phosphoryl group from UDP-galactose 1-phosphate
Back Show alignment and domain information
Probab=97.25 E-value=0.0014 Score=47.38 Aligned_cols=67 Identities=13% Similarity=0.189 Sum_probs=54.9
Q ss_pred cEEEeCCcccCCcCCCCHHHHHHHHHHHHHHHHHHHhhcCCCceEEEEecCCCCCCCcceEEEEEee
Q 034378 11 PFKIDPRRDAVRFGDLTADETRDLWLTAQTVGTQLESYHKASSLAFAIQDGPQAGQTVPHVHIHIVP 77 (96)
Q Consensus 11 ~~lIiPk~H~~~l~dl~~~e~~~l~~~~~~v~~~l~~~~~~~~~~i~~~~~~~~gq~v~H~HiHiiP 77 (96)
.++|...+|..++.+++.+++.+++.+.++-.+.|.+.-+..-+.+..|.|+.+|.+..|-|.+|+.
T Consensus 95 eVii~sp~H~~~l~~~~~~~i~~v~~~~~~r~~~l~~~~~~~yv~if~N~G~~aGaSl~HpH~Qi~a 161 (329)
T cd00608 95 EVICFSPDHNLTLAEMSVAEIREVVEAWAERTRELGKNPRIKYVQIFENKGAEMGASLPHPHGQIWA 161 (329)
T ss_pred EEEEECCcccCChhhCCHHHHHHHHHHHHHHHHHHhcCCCCcEEEEEeecCcccccCCCCCCeeeee
Confidence 6788899999999999999999999988888887765222233455678899999999999999874
The structure of E.coli GalT reveals that the enzyme contains two identical subunits. It also demonstrates that the active site is formed by amino acid residues from both subunits of the dimer.
>PLN02643 ADP-glucose phosphorylase
Back Show alignment and domain information
Probab=97.24 E-value=0.0017 Score=47.34 Aligned_cols=68 Identities=21% Similarity=0.277 Sum_probs=54.4
Q ss_pred ccEEEeCCcccCCcCCCCHHHHHHHHHHHHHHHHHHHhhcCCCceEEEEecCCCCCCCcceEEEEEee
Q 034378 10 GPFKIDPRRDAVRFGDLTADETRDLWLTAQTVGTQLESYHKASSLAFAIQDGPQAGQTVPHVHIHIVP 77 (96)
Q Consensus 10 g~~lIiPk~H~~~l~dl~~~e~~~l~~~~~~v~~~l~~~~~~~~~~i~~~~~~~~gq~v~H~HiHiiP 77 (96)
-+++|-.-+|..++.+|+.+++..+..+.++-.+.|++.-+..=+.+.-|.|+.+|.+..|-|-.|+.
T Consensus 108 ~eVii~sp~H~~~l~~~~~~~i~~v~~~~~~r~~~l~~~~~i~yv~iF~N~G~~aGaSl~HPH~Qi~a 175 (336)
T PLN02643 108 HDVVIETPVHSVQLSDLPARHIGEVLKAYKKRINQLQSDSRFKYVQVFKNHGASAGASMSHSHSQIIA 175 (336)
T ss_pred EEEEEeCCccCCChHHCCHHHHHHHHHHHHHHHHHHhcCCCceEEEEEeecCccCCcCCCCCceeeEe
Confidence 45788889999999999999999999988877777765322223455678899999999999999875
>COG1085 GalT Galactose-1-phosphate uridylyltransferase [Energy production and conversion]
Back Show alignment and domain information
Probab=96.84 E-value=0.0074 Score=44.10 Aligned_cols=67 Identities=19% Similarity=0.236 Sum_probs=56.6
Q ss_pred cEEEeCCcccCCcCCCCHHHHHHHHHHHHHHHHHHHhhcCCCceEEEEecCCCCCCCcceEEEEEee
Q 034378 11 PFKIDPRRDAVRFGDLTADETRDLWLTAQTVGTQLESYHKASSLAFAIQDGPQAGQTVPHVHIHIVP 77 (96)
Q Consensus 11 ~~lIiPk~H~~~l~dl~~~e~~~l~~~~~~v~~~l~~~~~~~~~~i~~~~~~~~gq~v~H~HiHiiP 77 (96)
.++|-...|..++.+++.+++.++..+.+...+.|.+.-...-+.+..|.|+.+|.+..|-|..|+-
T Consensus 96 ~VIvesp~H~~~l~~~~~~~~~~vv~~~~e~~~~L~~~~~~~yV~iF~N~Gk~~G~S~~HPH~Qi~a 162 (338)
T COG1085 96 RVIVESPDHSKTLPELPVEEIEEVVKLWQERVRELYEREKYKYVQIFENKGKAAGASLPHPHGQIVA 162 (338)
T ss_pred EEEEECCcccCccccCCHHHHHHHHHHHHHHHHHHhhccCcceEEeeeccCcccCccCCCCCcceee
Confidence 4566679999999999999999999999999999987543445667788899999999999999763
>PRK11720 galactose-1-phosphate uridylyltransferase; Provisional
Back Show alignment and domain information
Probab=96.84 E-value=0.0064 Score=44.50 Aligned_cols=66 Identities=17% Similarity=0.111 Sum_probs=54.9
Q ss_pred ccEEEeCCcccCCcCCCCHHHHHHHHHHHHHHHHHHHhhcCCCceEEEEecCCCCCCCcceEEEEEee
Q 034378 10 GPFKIDPRRDAVRFGDLTADETRDLWLTAQTVGTQLESYHKASSLAFAIQDGPQAGQTVPHVHIHIVP 77 (96)
Q Consensus 10 g~~lIiPk~H~~~l~dl~~~e~~~l~~~~~~v~~~l~~~~~~~~~~i~~~~~~~~gq~v~H~HiHiiP 77 (96)
-+++|-..+|..++.+|+.+++..+..+.+.-.+.|.+. ..=+.+.-|.|+.+|.+..|=|-.|+.
T Consensus 106 ~eViv~sp~H~~~l~~~~~~~i~~v~~~~~~r~~~l~~~--i~yv~iF~N~G~~~GaSl~HPH~Qi~a 171 (346)
T PRK11720 106 SRVICFSPDHSKTLPELSVAALREVVDTWQEQTAELGKT--YPWVQVFENKGAAMGCSNPHPHGQIWA 171 (346)
T ss_pred EEEEEECCCcCCChhHCCHHHHHHHHHHHHHHHHHHHhC--CcEEEEEeecCcccCcCCCCCceeeee
Confidence 457888899999999999999999999999888888774 233445567799999999999999874
>COG4360 APA2 ATP adenylyltransferase (5',5'''-P-1,P-4-tetraphosphate phosphorylase II) [Nucleotide transport and metabolism]
Back Show alignment and domain information
Probab=96.56 E-value=0.0068 Score=42.53 Aligned_cols=66 Identities=20% Similarity=0.155 Sum_probs=45.9
Q ss_pred CCCCCccccEEEeCCcccCCcCCCCHHHHHHHHHHHHHHHHHHHhhcCCCceEEEEecCCCCCCCcceEEEEEeeCC
Q 034378 3 SIEQYAFGPFKIDPRRDAVRFGDLTADETRDLWLTAQTVGTQLESYHKASSLAFAIQDGPQAGQTVPHVHIHIVPRK 79 (96)
Q Consensus 3 ~~~p~~~g~~lIiPk~H~~~l~dl~~~e~~~l~~~~~~v~~~l~~~~~~~~~~i~~~~~~~~gq~v~H~HiHiiPr~ 79 (96)
+.-|+.+.|+|||.++--..=+-|+..++....+++. +-++ -+..|.||.+|.+.+|-|+.++|.-
T Consensus 99 NKF~VVdeHlLiVTrefedQ~s~LTl~Df~ta~~vL~----------~ldg-lvFYNsGp~aGaSq~HkHLQi~pmP 164 (298)
T COG4360 99 NKFPVVDEHLLIVTREFEDQESALTLADFTTAYAVLC----------GLDG-LVFYNSGPIAGASQDHKHLQIVPMP 164 (298)
T ss_pred hcCCcccceeEEeehhhhhccccCCHHHHHHHHHHHh----------cccc-eEEecCCCCcCcCCCccceeEeecc
Confidence 3568889999999887655455566555544333322 2233 3556889999999999999999853
>TIGR00209 galT_1 galactose-1-phosphate uridylyltransferase, family 1
Back Show alignment and domain information
Probab=96.11 E-value=0.037 Score=40.59 Aligned_cols=66 Identities=15% Similarity=0.115 Sum_probs=53.9
Q ss_pred ccEEEeCCcccCCcCCCCHHHHHHHHHHHHHHHHHHHhhcCCCceEEEEecCCCCCCCcceEEEEEee
Q 034378 10 GPFKIDPRRDAVRFGDLTADETRDLWLTAQTVGTQLESYHKASSLAFAIQDGPQAGQTVPHVHIHIVP 77 (96)
Q Consensus 10 g~~lIiPk~H~~~l~dl~~~e~~~l~~~~~~v~~~l~~~~~~~~~~i~~~~~~~~gq~v~H~HiHiiP 77 (96)
-+++|-.-+|-.++.+|+.+++..+..+.+.-.+.|.. +..=+.+.-|.|+.+|.+.+|-|-.|+.
T Consensus 106 ~eVii~sp~H~~~l~~m~~~~i~~v~~~~~~r~~~l~~--~i~yv~iF~N~G~~~GaSl~HPH~Qi~a 171 (347)
T TIGR00209 106 SRVICFSPDHSKTLPELSVAALTEIVKTWQEQTAELGK--TYPWVQIFENKGAAMGCSNPHPHGQIWA 171 (347)
T ss_pred EEEEEeCCCccCChhHCCHHHHHHHHHHHHHHHHHHHh--CCcEEEEEeecCcccCcCCCCCceeeee
Confidence 45777789999999999999999999999988888873 2233445567789999999999999874
This enzyme is involved in glucose and galactose interconversion. This model describes one of two extremely distantly related branches of the model pfam01087 from PFAM.
>PF01087 GalP_UDP_transf: Galactose-1-phosphate uridyl transferase, N-terminal domain; InterPro: IPR005849 Galactose-1-phosphate uridyl transferase catalyses the conversion of UDP-glucose and alpha-D-galactose 1-phosphate to alpha-D-glucose 1-phosphate and UDP-galactose during galactose metabolism
Back Show alignment and domain information
Probab=96.02 E-value=0.034 Score=37.13 Aligned_cols=67 Identities=18% Similarity=0.303 Sum_probs=47.8
Q ss_pred cEEEeCCcccCCcCCCCHHHHHHHHHHHHHHHHHHHhhcCCCceEEEEecCCCCCCCcceEEEEEee
Q 034378 11 PFKIDPRRDAVRFGDLTADETRDLWLTAQTVGTQLESYHKASSLAFAIQDGPQAGQTVPHVHIHIVP 77 (96)
Q Consensus 11 ~~lIiPk~H~~~l~dl~~~e~~~l~~~~~~v~~~l~~~~~~~~~~i~~~~~~~~gq~v~H~HiHiiP 77 (96)
+++|-.-+|-.++.+|+.++...++.+.+.-...|.+.-...-+.+.-|.|..+|.+..|=|-.|+.
T Consensus 112 EViIe~p~h~~~~~~~~~~~~~~i~~a~~~r~~~l~~~~~~~yv~~FeN~G~~~GaSl~HpHsQi~a 178 (183)
T PF01087_consen 112 EVIIESPKHERTLADMSVKEIKEILKAWRDRYRELSSDKYIKYVLIFENEGYEAGASLPHPHSQIIA 178 (183)
T ss_dssp EEEES-SSTT--GGGS-HHHHHHHHHHHHHHHHHHCT-TT-SEEEEEEEESGGGT-SSSSSEEEEEE
T ss_pred EEEEeCCCCCCChhhCCHHHHHHHHHHHHHHHHHHhccCCcceEEEEEecCCcCCCCCCCCceEEec
Confidence 6677788898999999999999999988877777655333333455677799999999999998874
The enzyme is present in prokaryotes and eukaryotes. Defects in GalT in humans is the cause of galactosemia, an inherited disorder of galactose metabolism that leads to jaundice, cataracts and mental retardation. This domain describes the C-terminal of Galactose-1-phosphate uridyl transferase. SCOP reports fold duplication of the C-terminal with the N-terminal domain. Both are involved in Zn and Fe binding; GO: 0008108 UDP-glucose:hexose-1-phosphate uridylyltransferase activity, 0006012 galactose metabolic process; PDB: 1GUP_C 1HXP_A 1HXQ_A 1GUQ_C 1Z84_B 1ZWJ_A 2Q4L_A 2H39_B 2Q4H_A.
>TIGR00672 cdh CDP-diacylglycerol pyrophosphatase, bacterial type
Back Show alignment and domain information
Probab=95.85 E-value=0.028 Score=39.54 Aligned_cols=69 Identities=16% Similarity=0.167 Sum_probs=50.8
Q ss_pred CCccccEEEeCCcccCCcCC------CCHHHHHHHHHHHHHHHHHHHhhcCCCceEEEEecCCCCCCCcceEEEEEe
Q 034378 6 QYAFGPFKIDPRRDAVRFGD------LTADETRDLWLTAQTVGTQLESYHKASSLAFAIQDGPQAGQTVPHVHIHIV 76 (96)
Q Consensus 6 p~~~g~~lIiPk~H~~~l~d------l~~~e~~~l~~~~~~v~~~l~~~~~~~~~~i~~~~~~~~gq~v~H~HiHii 76 (96)
+.-|.|.|+||-..++-+.+ -++..+.+-+..-..+.+++.+-+..+.+.+.+|.. .|.+-.|+||||=
T Consensus 69 ~~Gp~qyLLmPt~rIsGIEsP~Ll~~~tpnyf~~AW~aR~~v~~~~g~pipd~~lsLaINS~--~gRSQnQLHIHIs 143 (250)
T TIGR00672 69 LNGPLQYLLMPTYRINGTESPLLLDPSTPNFFWLAWQARDFMSKKYGQPIPDRAVSLAINSR--TGRSQNHFHIHIS 143 (250)
T ss_pred CCCCceeEEeeccccCCccChhhcCCCCccHHHHHHHHhHHHHHhcCCCCChhheeEEecCC--CCcccccceeeHh
Confidence 45678999999998876652 223456666777777778887777666788888764 5788899999973
Alternate names for this enzyme include CDP-diglyceride hydrolase and CDP-diacylglycerol hydrolase.
>PF02611 CDH: CDP-diacylglycerol pyrophosphatase; InterPro: IPR003763 The CDP-diacylglycerol pyrophosphatases 3
Back Show alignment and domain information
Probab=95.69 E-value=0.026 Score=39.10 Aligned_cols=69 Identities=20% Similarity=0.265 Sum_probs=39.8
Q ss_pred CCccccEEEeCCcccCCcCC------CCHHHHHHHHHHHHHHHHHHHhhcCCCceEEEEecCCCCCCCcceEEEEEe
Q 034378 6 QYAFGPFKIDPRRDAVRFGD------LTADETRDLWLTAQTVGTQLESYHKASSLAFAIQDGPQAGQTVPHVHIHIV 76 (96)
Q Consensus 6 p~~~g~~lIiPk~H~~~l~d------l~~~e~~~l~~~~~~v~~~l~~~~~~~~~~i~~~~~~~~gq~v~H~HiHii 76 (96)
+.-+.++|+||-.-++-+.+ =++..+..-+..-..+.+++.+-+..+.+.+.+|.. .|.+-.|+||||-
T Consensus 41 ~~G~~qyLL~Pt~rIsGIEsP~Ll~~~~pNyf~~AW~aR~~v~~~~g~~lpd~~lsLaINS~--~gRsQdQLHIHis 115 (222)
T PF02611_consen 41 RNGPLQYLLMPTDRISGIESPALLEPRTPNYFADAWQARGFVSQKLGKPLPDDDLSLAINSQ--YGRSQDQLHIHIS 115 (222)
T ss_dssp SSSSS-EEEEESS---STT-GGGGSTTS--HHHHHHHTTHHHHHHHTS---GGGEEEEEB-G--GG-S--S--EEEE
T ss_pred CCCCccEEEeeccccCCccChhhcCCCCccHHHHHHHhhHHHHHhcCCCCCccceEEEecCc--cCccccceEeEhh
Confidence 45678999999988776653 233456666666677888888877677899999874 4777789999974
6.1.26 from EC play a role in the regulation of phospholipid metabolism by inositol, as well as regulating the cellular levels of phosphatidylinositol [].; GO: 0008715 CDP-diacylglycerol diphosphatase activity, 0008654 phospholipid biosynthetic process, 0016020 membrane; PDB: 2POF_A.
>PRK05471 CDP-diacylglycerol pyrophosphatase; Provisional
Back Show alignment and domain information
Probab=95.50 E-value=0.039 Score=38.84 Aligned_cols=70 Identities=19% Similarity=0.241 Sum_probs=51.6
Q ss_pred CCCccccEEEeCCcccCCcCC---C---CHHHHHHHHHHHHHHHHHHHhhcCCCceEEEEecCCCCCCCcceEEEEEe
Q 034378 5 EQYAFGPFKIDPRRDAVRFGD---L---TADETRDLWLTAQTVGTQLESYHKASSLAFAIQDGPQAGQTVPHVHIHIV 76 (96)
Q Consensus 5 ~p~~~g~~lIiPk~H~~~l~d---l---~~~e~~~l~~~~~~v~~~l~~~~~~~~~~i~~~~~~~~gq~v~H~HiHii 76 (96)
.+.-|.|.|+||-..++-+.+ + ++..+.+-+..-..+.+++.+.+..+.+.+.+|.. .|.+-.|+||||-
T Consensus 69 D~~Gp~qyLLiPt~rIsGIEsP~Ll~~~tpnyf~~AW~aR~~v~~~~g~pipd~~lsLaINS~--~gRSQnQLHIHIs 144 (252)
T PRK05471 69 DRNGPLQYLLMPTYRISGIESPLLLEPSTPNYFALAWQARDFMSKKYGKPIPDSAVSLAINSR--YGRTQDQLHIHIS 144 (252)
T ss_pred cCCCCcceEEeecccccCccCccccCCCCccHHHHHHHHhHHHHHhhCCCCChhheEEEecCC--CCccccceeeehh
Confidence 345688999999998776643 1 22456677777777888888877666788888764 5788899999974
>KOG2720 consensus Predicted hydrolase (HIT family) [General function prediction only]
Back Show alignment and domain information
Probab=95.18 E-value=0.02 Score=42.14 Aligned_cols=65 Identities=18% Similarity=0.226 Sum_probs=37.2
Q ss_pred CCCCCccccEEEeCCcccCCcCCCCHHHHHHHHHHHHHHHHHHHhhcCCCceEEEEecCCCCCCCcceEEEEEe
Q 034378 3 SIEQYAFGPFKIDPRRDAVRFGDLTADETRDLWLTAQTVGTQLESYHKASSLAFAIQDGPQAGQTVPHVHIHIV 76 (96)
Q Consensus 3 ~~~p~~~g~~lIiPk~H~~~l~dl~~~e~~~l~~~~~~v~~~l~~~~~~~~~~i~~~~~~~~gq~v~H~HiHii 76 (96)
+..|+..||+||||+.--..-.-++- .+|.-++..++. .+.+-+.++.|.- .+-.+|.|+|+|..
T Consensus 173 N~sPie~~H~LiiP~V~kc~pQrit~---~al~lav~~m~~-----~dd~~frlgyNSl-ga~AsVNHLHfha~ 237 (431)
T KOG2720|consen 173 NVSPIEYGHVLIIPRVLKCLPQRITH---KALLLAVTMMAE-----ADDPYFRLGYNSL-GAFASVNHLHFHAY 237 (431)
T ss_pred ecCccccCcEEEecchhccCcceeeH---HHHHHHHHHHHh-----cCCchhheecccc-hhhhhhhhhhhhhh
Confidence 46799999999999754322222222 222222222221 1334567776553 24577899999965
>COG2134 Cdh CDP-diacylglycerol pyrophosphatase [Lipid metabolism]
Back Show alignment and domain information
Probab=94.88 E-value=0.15 Score=35.18 Aligned_cols=67 Identities=18% Similarity=0.221 Sum_probs=46.7
Q ss_pred ccccEEEeCCcccCCcCCC------CHHHHHHHHHHHHHHHHHHHhhcCCCceEEEEecCCCCCCCcceEEEEEe
Q 034378 8 AFGPFKIDPRRDAVRFGDL------TADETRDLWLTAQTVGTQLESYHKASSLAFAIQDGPQAGQTVPHVHIHIV 76 (96)
Q Consensus 8 ~~g~~lIiPk~H~~~l~dl------~~~e~~~l~~~~~~v~~~l~~~~~~~~~~i~~~~~~~~gq~v~H~HiHii 76 (96)
-|-..|++|-.+++-+.+- ++.-+-.-+++-..+++++.+.+....+.+.+|.. .|.+-.|+|+||-
T Consensus 72 gPlQyLLmPt~rItGiEsP~L~e~atpNyf~~AWqAR~fms~kyg~~ipd~dvsLaINs~--~gRtQdqlHIHIS 144 (252)
T COG2134 72 GPLQYLLMPTARITGIESPLLLEPATPNYFYLAWQARDFMSKKYGNPIPDSDVSLAINSK--NGRTQDQLHIHIS 144 (252)
T ss_pred CCceeEeeeeecccCCcChhhcCCCCccHHHHHHHHHHHHHHHhCCCCCccceEEEecCc--cCccccceEEEEE
Confidence 4677899999998766531 12235556666677778887776666777777653 5777889999974
>KOG0562 consensus Predicted hydrolase (HIT family) [General function prediction only]
Back Show alignment and domain information
Probab=94.48 E-value=0.019 Score=38.07 Aligned_cols=70 Identities=13% Similarity=0.126 Sum_probs=38.9
Q ss_pred CCCCccccEEEeCCcc-cCCcCCCCHHHHHHHHHHHH----HHHHHHHhhcCCCceEEEEecCCCCCCCcceEEEEEeeC
Q 034378 4 IEQYAFGPFKIDPRRD-AVRFGDLTADETRDLWLTAQ----TVGTQLESYHKASSLAFAIQDGPQAGQTVPHVHIHIVPR 78 (96)
Q Consensus 4 ~~p~~~g~~lIiPk~H-~~~l~dl~~~e~~~l~~~~~----~v~~~l~~~~~~~~~~i~~~~~~~~gq~v~H~HiHiiPr 78 (96)
..|-+..|+||+||+- ++++.+...+.+. +..... .+...+...--...+++++|.+ -+..++|+|||-.
T Consensus 31 ~fPKa~~H~LvLpr~s~i~~l~~~~qe~l~-ll~~~h~~~~~~v~~~~~~~~~~~f~vG~Hav----PSM~~LHLHVISk 105 (184)
T KOG0562|consen 31 KFPKARMHLLVLPRRSSIDSLFSVVQEHLS-LLKEDHAVGPCWVDQLTNEALCNYFRVGFHAV----PSMNNLHLHVISK 105 (184)
T ss_pred cCccceeEEEEecccchhHHHHHHHHHHhh-HhHHHhhcCchHHHHhcchhhhhheeeeeccC----cchhheeEEEeec
Confidence 3577889999999743 4555444444322 122222 2223322211123567777654 4577999999974
>PF01076 Mob_Pre: Plasmid recombination enzyme; InterPro: IPR001668 With some plasmids, recombination can occur in a site specific manner that is independent of RecA
Back Show alignment and domain information
Probab=91.44 E-value=1.2 Score=29.99 Aligned_cols=51 Identities=18% Similarity=0.217 Sum_probs=36.0
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHhhcCCC-ceEEEEecCCCCCCCcceEEEEEeeCCCCC
Q 034378 25 DLTADETRDLWLTAQTVGTQLESYHKAS-SLAFAIQDGPQAGQTVPHVHIHIVPRKAAS 82 (96)
Q Consensus 25 dl~~~e~~~l~~~~~~v~~~l~~~~~~~-~~~i~~~~~~~~gq~v~H~HiHiiPr~~~d 82 (96)
+++.++ .-...+...+.+.+.+|.+ -++..+|.. .+.||+|+-++|...++
T Consensus 94 ~~~~e~---~~~~~~~~~~~~~~r~g~~ni~~a~vH~D----E~tPH~H~~~vP~~~~~ 145 (196)
T PF01076_consen 94 DLDPEQ---QKRWFEDSLEWLQERYGNENIVSAVVHLD----ETTPHMHFDVVPIDEDG 145 (196)
T ss_pred chhhHH---HHHHHHHHHHHHHHHCCchhEEEEEEECC----CCCcceEEEEeeccccc
Confidence 344444 4445566777888888855 567778765 45899999999987654
In such cases, the recombination event requires another protein called Pre. Pre is a plasmid recombination enzyme. This protein is also known as Mob (conjugative mobilisation) [].; GO: 0003677 DNA binding, 0006310 DNA recombination, 0005727 extrachromosomal circular DNA
>COG5075 Uncharacterized conserved protein [Function unknown]
Back Show alignment and domain information
Probab=89.98 E-value=0.43 Score=33.78 Aligned_cols=64 Identities=20% Similarity=0.146 Sum_probs=44.4
Q ss_pred cEEEeC-CcccCCcCCCCHHHHHHHHHHHHHHHHHHHhhcCCC--ceEEEEecCCCCCCCcceEEEEEeeC
Q 034378 11 PFKIDP-RRDAVRFGDLTADETRDLWLTAQTVGTQLESYHKAS--SLAFAIQDGPQAGQTVPHVHIHIVPR 78 (96)
Q Consensus 11 ~~lIiP-k~H~~~l~dl~~~e~~~l~~~~~~v~~~l~~~~~~~--~~~i~~~~~~~~gq~v~H~HiHiiPr 78 (96)
++++|- +.-+.++-||....+.-+.++-.++.......|+.+ -..+.+|-.| +.+|+|+||+--
T Consensus 185 ~l~aIv~~~diktiRDlr~~~i~~l~rl~~kiltevp~~f~vd~n~l~mfvHY~P----sYyhlHvHI~nI 251 (305)
T COG5075 185 YLVAIVYRTDIKTIRDLRYYHILWLIRLNNKILTEVPYQFGVDPNELRMFVHYQP----SYYHLHVHIVNI 251 (305)
T ss_pred eEEEEEecCCchhhhhCchhhhhHHHhhcccceEecchhcCcChhHeEEEEEecc----ceEEEEEEEEee
Confidence 344444 445888999999988888887777766665555543 4666766544 368999999863
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
ID Alignment Graph Length
Definition
E-value Query 96
d1fita_ 146
d.13.1.1 (A:) FHIT (fragile histidine triad protei
1e-09 d1kpfa_ 111
d.13.1.1 (A:) Protein kinase C inhibitor-1, PKCI-1
6e-08 d1xqua_ 113
d.13.1.1 (A:) Putative hydrolase {Clostridium ther
5e-07 d1emsa1 160
d.13.1.1 (A:281-440) NIT-FHIT fusion protein, C-te
3e-06 d1y23a_ 139
d.13.1.1 (A:) Hit {Bacillus subtilis [TaxId: 1423]
5e-06 d2oika1 139
d.13.1.1 (A:6-144) Histidine triad protein Mfla250
2e-05 d1guqa2 171
d.13.1.2 (A:178-348) Galactose-1-phosphate uridyly
6e-04 d1z84a2 156
d.13.1.2 (A:196-351) Galactose-1-phosphate uridyly
0.003
>d1fita_ d.13.1.1 (A:) FHIT (fragile histidine triad protein) {Human (Homo sapiens) [TaxId: 9606]} Length = 146
Back Hide information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: HIT-like
superfamily: HIT-like
family: HIT (HINT, histidine triad) family of protein kinase-interacting proteins
domain: FHIT (fragile histidine triad protein)
species: Human (Homo sapiens) [TaxId: 9606]
Score = 49.8 bits (118), Expect = 1e-09
Identities = 39/85 (45%), Positives = 51/85 (60%)
Query: 4 IEQYAFGPFKIDPRRDAVRFGDLTADETRDLWLTAQTVGTQLESYHKASSLAFAIQDGPQ 63
+ G + P R RF DL DE DL+ T Q VGT +E + +SL F++QDGP+
Sbjct: 27 RKPVVPGHVLVCPLRPVERFHDLRPDEVADLFQTTQRVGTVVEKHFHGTSLTFSMQDGPE 86
Query: 64 AGQTVPHVHIHIVPRKAASSEENDG 88
AGQTV HVH+H++PRKA ND
Sbjct: 87 AGQTVKHVHVHVLPRKAGDFHRNDS 111
>d1kpfa_ d.13.1.1 (A:) Protein kinase C inhibitor-1, PKCI-1 {Human (Homo sapiens) [TaxId: 9606]} Length = 111
Back Show information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: HIT-like
superfamily: HIT-like
family: HIT (HINT, histidine triad) family of protein kinase-interacting proteins
domain: Protein kinase C inhibitor-1, PKCI-1
species: Human (Homo sapiens) [TaxId: 9606]
Score = 44.3 bits (104), Expect = 6e-08
Identities = 11/64 (17%), Positives = 22/64 (34%)
Query: 16 PRRDAVRFGDLTADETRDLWLTAQTVGTQLESYHKASSLAFAIQDGPQAGQTVPHVHIHI 75
P++ + D+ L + +G GQ+V HVH+H+
Sbjct: 41 PKKHISQISVAEDDDESLLGHLMIVGKKCAADLGLNKGYRMVVNEGSDGGQSVYHVHLHV 100
Query: 76 VPRK 79
+ +
Sbjct: 101 LGGR 104
>d1xqua_ d.13.1.1 (A:) Putative hydrolase {Clostridium thermocellum [TaxId: 1515]} Length = 113
Back Show information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: HIT-like
superfamily: HIT-like
family: HIT (HINT, histidine triad) family of protein kinase-interacting proteins
domain: Putative hydrolase
species: Clostridium thermocellum [TaxId: 1515]
Score = 42.1 bits (98), Expect = 5e-07
Identities = 15/75 (20%), Positives = 23/75 (30%), Gaps = 1/75 (1%)
Query: 6 QYAFGPFKIDPRRDAVRFGDLTADETRDLWLTAQTVGTQLESYHKA-SSLAFAIQDGPQA 64
A I P+ ++ + L + E A G A
Sbjct: 33 PAAPVHVLIIPKEHIANVKEINESNAQILIDIHKAANKVAEDLGIAEKGYRLITNCGVAA 92
Query: 65 GQTVPHVHIHIVPRK 79
GQTV H+H H++
Sbjct: 93 GQTVFHLHYHLLGGV 107
>d1emsa1 d.13.1.1 (A:281-440) NIT-FHIT fusion protein, C-terminal domain {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 160
Back Show information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: HIT-like
superfamily: HIT-like
family: HIT (HINT, histidine triad) family of protein kinase-interacting proteins
domain: NIT-FHIT fusion protein, C-terminal domain
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 41.0 bits (95), Expect = 3e-06
Identities = 36/84 (42%), Positives = 50/84 (59%)
Query: 4 IEQYAFGPFKIDPRRDAVRFGDLTADETRDLWLTAQTVGTQLESYHKASSLAFAIQDGPQ 63
++ G + P+R R DLT ET DL++ A+ V LE +H +S +QDG
Sbjct: 44 LKPVTDGHVLVSPKRVVPRLTDLTDAETADLFIVAKKVQAMLEKHHNVTSTTICVQDGKD 103
Query: 64 AGQTVPHVHIHIVPRKAASSEEND 87
AGQTVPHVHIHI+PR+A +N+
Sbjct: 104 AGQTVPHVHIHILPRRAGDFGDNE 127
>d1y23a_ d.13.1.1 (A:) Hit {Bacillus subtilis [TaxId: 1423]} Length = 139
Back Show information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: HIT-like
superfamily: HIT-like
family: HIT (HINT, histidine triad) family of protein kinase-interacting proteins
domain: Hit
species: Bacillus subtilis [TaxId: 1423]
Score = 39.9 bits (92), Expect = 5e-06
Identities = 17/75 (22%), Positives = 31/75 (41%)
Query: 4 IEQYAFGPFKIDPRRDAVRFGDLTADETRDLWLTAQTVGTQLESYHKASSLAFAIQDGPQ 63
I Q G + P+ + T + + + + + + L +G +
Sbjct: 30 ISQVTKGHTLVIPKTHIENVYEFTDELAKQYFHAVPKIARAIRDEFEPIGLNTLNNNGEK 89
Query: 64 AGQTVPHVHIHIVPR 78
AGQ+V H H+HI+PR
Sbjct: 90 AGQSVFHYHMHIIPR 104
>d2oika1 d.13.1.1 (A:6-144) Histidine triad protein Mfla2506 {Methylobacillus flagellatus [TaxId: 405]} Length = 139
Back Show information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: HIT-like
superfamily: HIT-like
family: HIT (HINT, histidine triad) family of protein kinase-interacting proteins
domain: Histidine triad protein Mfla2506
species: Methylobacillus flagellatus [TaxId: 405]
Score = 38.3 bits (88), Expect = 2e-05
Identities = 17/77 (22%), Positives = 23/77 (29%), Gaps = 5/77 (6%)
Query: 4 IEQYAFGPFKIDPRRDAVRFGDLTADETRDLWLTAQTVGTQLESYHKASSLAFAIQDGPQ 63
Q G ++ R DL E L L V + +
Sbjct: 29 ENQDYPGFCRVILNRHVKEMSDLRPAERDHLMLVVFAV-----EEAVREVMRPDKINLAS 83
Query: 64 AGQTVPHVHIHIVPRKA 80
G PHVH H++PR
Sbjct: 84 LGNMTPHVHWHVIPRFK 100
>d1guqa2 d.13.1.2 (A:178-348) Galactose-1-phosphate uridylyltransferase {Escherichia coli [TaxId: 562]} Length = 171
Back Show information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: HIT-like
superfamily: HIT-like
family: Hexose-1-phosphate uridylyltransferase
domain: Galactose-1-phosphate uridylyltransferase
species: Escherichia coli [TaxId: 562]
Score = 34.6 bits (79), Expect = 6e-04
Identities = 13/66 (19%), Positives = 25/66 (37%), Gaps = 3/66 (4%)
Query: 16 PRRDAVRFGDLTADETRDLWLTAQTVGTQLESYHKAS-SLAFAIQDGP--QAGQTVPHVH 72
P+ +R DLT + DL L + + ++ ++ + S + P +H
Sbjct: 60 PKAHVLRITDLTDAQRSDLALALKKLTSRYDNLFQCSFPYSMGWHGAPFNGEENQHWQLH 119
Query: 73 IHIVPR 78
H P
Sbjct: 120 AHFYPP 125
>d1z84a2 d.13.1.2 (A:196-351) Galactose-1-phosphate uridylyltransferase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 156
Back Show information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: HIT-like
superfamily: HIT-like
family: Hexose-1-phosphate uridylyltransferase
domain: Galactose-1-phosphate uridylyltransferase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Score = 32.4 bits (73), Expect = 0.003
Identities = 12/79 (15%), Positives = 22/79 (27%), Gaps = 4/79 (5%)
Query: 4 IEQYAFGPFKIDPRRDAVRFGDLTADETRDLWLTAQTVGTQLESYHKASSLAFAIQDGPQ 63
I P+ + F L + DL + + ++ + I P
Sbjct: 45 FAATYPFEIWIIPKDHSSHFHHLDDVKAVDLGGLLKLMLQKIAKQLNDPPYNYMIHTSPL 104
Query: 64 AG----QTVPHVHIHIVPR 78
H + IVP+
Sbjct: 105 KVTESQLPYTHWFLQIVPQ 123
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
ID Alignment Graph Length
Definition
Probability Query 96
d1fita_ 146
FHIT (fragile histidine triad protein) {Human (Hom
99.96 d1emsa1 160
NIT-FHIT fusion protein, C-terminal domain {Nemato
99.96 d1y23a_ 139
Hit {Bacillus subtilis [TaxId: 1423]}
99.95 d2oika1 139
Histidine triad protein Mfla2506 {Methylobacillus
99.93 d1kpfa_ 111
Protein kinase C inhibitor-1, PKCI-1 {Human (Homo
99.92 d1xqua_ 113
Putative hydrolase {Clostridium thermocellum [TaxI
99.91 d1z84a2 156
Galactose-1-phosphate uridylyltransferase {Thale c
99.9 d1guqa2 171
Galactose-1-phosphate uridylyltransferase {Escheri
99.83 d1vlra1 192
mRNA decapping enzyme DcpS C-terminal domain {Mous
99.12 d1z84a1 173
Galactose-1-phosphate uridylyltransferase {Thale c
97.83 d1guqa1 176
Galactose-1-phosphate uridylyltransferase {Escheri
97.39 d2pofa1 220
CDP-diacylglycerol pyrophosphatase CDH {Escherichi
96.77 d1ml4a1 150
Aspartate carbamoyltransferase catalytic subunit {
84.92 d1duvg1 150
Ornithine transcarbamoylase {Escherichia coli [Tax
82.2
>d1fita_ d.13.1.1 (A:) FHIT (fragile histidine triad protein) {Human (Homo sapiens) [TaxId: 9606]}
Back Hide information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: HIT-like
superfamily: HIT-like
family: HIT (HINT, histidine triad) family of protein kinase-interacting proteins
domain: FHIT (fragile histidine triad protein)
species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.96 E-value=1.2e-29 Score=161.60 Aligned_cols=88 Identities=44% Similarity=0.662 Sum_probs=78.0
Q ss_pred CCCCCccccEEEeCCcccCCcCCCCHHHHHHHHHHHHHHHHHHHhhcCCCceEEEEecCCCCCCCcceEEEEEeeCCCCC
Q 034378 3 SIEQYAFGPFKIDPRRDAVRFGDLTADETRDLWLTAQTVGTQLESYHKASSLAFAIQDGPQAGQTVPHVHIHIVPRKAAS 82 (96)
Q Consensus 3 ~~~p~~~g~~lIiPk~H~~~l~dl~~~e~~~l~~~~~~v~~~l~~~~~~~~~~i~~~~~~~~gq~v~H~HiHiiPr~~~d 82 (96)
...|.+|||+||+||+|+.++.||+++|+.+|+.+++++.+++++.+++++||+++|+|+.+||+|+|+|+||+||+.+|
T Consensus 26 d~~P~~pgH~LViPk~H~~~l~dL~~~e~~~l~~~~~~v~~~l~~~~~~~~~ni~~~~g~~agq~v~HlH~HiiPR~~gD 105 (146)
T d1fita_ 26 NRKPVVPGHVLVCPLRPVERFHDLRPDEVADLFQTTQRVGTVVEKHFHGTSLTFSMQDGPEAGQTVKHVHVHVLPRKAGD 105 (146)
T ss_dssp CSSCSSTTCEEEEESSCCSSGGGSCHHHHHHHHHHHHHHHHHHHHHTTCSEEEEEECCSGGGTCCSSSCCEEEEEECTTC
T ss_pred CCCCCCCcEEEEEecceehHHHHhhHHHHHHHHHHHHHHHHHHHhhcccceEEEEEccccccCCCCCEEEEEEecCcCCC
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCcc
Q 034378 83 SEENDGNV 90 (96)
Q Consensus 83 ~~~~~~~~ 90 (96)
+..++.+|
T Consensus 106 ~~~~~~~~ 113 (146)
T d1fita_ 106 FHRNDSIY 113 (146)
T ss_dssp --------
T ss_pred cccccchh
Confidence 87776654
>d1emsa1 d.13.1.1 (A:281-440) NIT-FHIT fusion protein, C-terminal domain {Nematode (Caenorhabditis elegans) [TaxId: 6239]}
Back Show information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: HIT-like
superfamily: HIT-like
family: HIT (HINT, histidine triad) family of protein kinase-interacting proteins
domain: NIT-FHIT fusion protein, C-terminal domain
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=99.96 E-value=1.6e-29 Score=163.30 Aligned_cols=85 Identities=42% Similarity=0.685 Sum_probs=78.8
Q ss_pred CCCCCccccEEEeCCcccCCcCCCCHHHHHHHHHHHHHHHHHHHhhcCCCceEEEEecCCCCCCCcceEEEEEeeCCCCC
Q 034378 3 SIEQYAFGPFKIDPRRDAVRFGDLTADETRDLWLTAQTVGTQLESYHKASSLAFAIQDGPQAGQTVPHVHIHIVPRKAAS 82 (96)
Q Consensus 3 ~~~p~~~g~~lIiPk~H~~~l~dl~~~e~~~l~~~~~~v~~~l~~~~~~~~~~i~~~~~~~~gq~v~H~HiHiiPr~~~d 82 (96)
.++|.+|||+|||||+|+.++.||+++|+.+++.+++++.+++++.+++++||+++|+|+.+||+|+|+|+|||||+.+|
T Consensus 43 Di~P~~pgH~LVIPK~H~~~l~dL~~ee~~~l~~~~~~v~~~l~~~~~~~g~ni~~n~G~~aGq~V~HlHiHIIPR~~~D 122 (160)
T d1emsa1 43 NLKPVTDGHVLVSPKRVVPRLTDLTDAETADLFIVAKKVQAMLEKHHNVTSTTICVQDGKDAGQTVPHVHIHILPRRAGD 122 (160)
T ss_dssp CSSCSSTTCEEEEESSCCSCGGGSCHHHHHHHHHHHHHHHHHHHHHTTCSEEEEECCCSGGGTCCSSSCCEEEEEECSSC
T ss_pred CCCCCCCCeEEEEEecccchhhhhhhHHHHHHHHHHHHhhhhhhhccccceEEEecccCCCCCeEEeEEEEEEECCcCCC
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCCCC
Q 034378 83 SEEND 87 (96)
Q Consensus 83 ~~~~~ 87 (96)
...+.
T Consensus 123 ~~~~~ 127 (160)
T d1emsa1 123 FGDNE 127 (160)
T ss_dssp C----
T ss_pred cccch
Confidence 65543
>d1y23a_ d.13.1.1 (A:) Hit {Bacillus subtilis [TaxId: 1423]}
Back Show information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: HIT-like
superfamily: HIT-like
family: HIT (HINT, histidine triad) family of protein kinase-interacting proteins
domain: Hit
species: Bacillus subtilis [TaxId: 1423]
Probab=99.95 E-value=2.7e-28 Score=153.57 Aligned_cols=80 Identities=21% Similarity=0.351 Sum_probs=76.9
Q ss_pred CCCCCccccEEEeCCcccCCcCCCCHHHHHHHHHHHHHHHHHHHhhcCCCceEEEEecCCCCCCCcceEEEEEeeCCCCC
Q 034378 3 SIEQYAFGPFKIDPRRDAVRFGDLTADETRDLWLTAQTVGTQLESYHKASSLAFAIQDGPQAGQTVPHVHIHIVPRKAAS 82 (96)
Q Consensus 3 ~~~p~~~g~~lIiPk~H~~~l~dl~~~e~~~l~~~~~~v~~~l~~~~~~~~~~i~~~~~~~~gq~v~H~HiHiiPr~~~d 82 (96)
..+|.++||+||+||+|+.++.+|+++++.+++.+++++.+++++.++++++|+++|+|+.+||+|+|+|+||+||+.+|
T Consensus 29 d~~P~~~GH~LViPk~H~~~~~dL~~~~~~~l~~~~~~~~~~l~~~~~~~g~~i~~n~g~~agq~v~H~H~HviPR~~~~ 108 (139)
T d1y23a_ 29 DISQVTKGHTLVIPKTHIENVYEFTDELAKQYFHAVPKIARAIRDEFEPIGLNTLNNNGEKAGQSVFHYHMHIIPRYGKG 108 (139)
T ss_dssp CTTCSSTTCEEEEESSCCSSGGGCCHHHHHTTTTHHHHHHHHHHHHHCCSEEEEEEEESGGGTCCSSSCCEEEEEECSTT
T ss_pred cCCCCCCcEEEEEEecccccccccchHHHHHHHHHHHHHHHHHhhhcccCCcEEEeCCCccccEecCEEEEEEEccccCC
Confidence 56899999999999999999999999999999999999999999999999999999999999999999999999998754
>d2oika1 d.13.1.1 (A:6-144) Histidine triad protein Mfla2506 {Methylobacillus flagellatus [TaxId: 405]}
Back Show information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: HIT-like
superfamily: HIT-like
family: HIT (HINT, histidine triad) family of protein kinase-interacting proteins
domain: Histidine triad protein Mfla2506
species: Methylobacillus flagellatus [TaxId: 405]
Probab=99.93 E-value=9.1e-26 Score=142.16 Aligned_cols=86 Identities=21% Similarity=0.249 Sum_probs=77.7
Q ss_pred CCCCCccccEEEeCCcccCCcCCCCHHHHHHHHHHHHHHHHHHHhhcCCCceEEEEecCCCCCCCcceEEEEEeeCCCCC
Q 034378 3 SIEQYAFGPFKIDPRRDAVRFGDLTADETRDLWLTAQTVGTQLESYHKASSLAFAIQDGPQAGQTVPHVHIHIVPRKAAS 82 (96)
Q Consensus 3 ~~~p~~~g~~lIiPk~H~~~l~dl~~~e~~~l~~~~~~v~~~l~~~~~~~~~~i~~~~~~~~gq~v~H~HiHiiPr~~~d 82 (96)
...|.+|||+||+||+|+.++.||+++|+.+++.+++++.+++++.++++++|+.. .||+|+|+|+|||||+.+|
T Consensus 28 ~~~p~~pGh~Lvipk~H~~~l~dL~~~e~~~l~~~~~~~~~~l~~~~~~~~~n~~~-----~g~~v~HlH~HviPR~~~d 102 (139)
T d2oika1 28 VENQDYPGFCRVILNRHVKEMSDLRPAERDHLMLVVFAVEEAVREVMRPDKINLAS-----LGNMTPHVHWHVIPRFKRD 102 (139)
T ss_dssp CCCTTCTTCEEEEESSCCSCGGGSCHHHHHHHHHHHHHHHHHHHHHHCCSEEEEEE-----CCSSSCSCEEEEEEECTTS
T ss_pred cCCCCCCcEEEEecccccchhhhccHHHHHHHHHHHHHHhHHHHhhcchhhhHHHH-----hcCCCCeEEEEEecccCCC
Confidence 35799999999999999999999999999999999999999999999999999985 7899999999999999988
Q ss_pred CCCCCCccccc
Q 034378 83 SEENDGNVSWD 93 (96)
Q Consensus 83 ~~~~~~~~~~~ 93 (96)
...+..++.++
T Consensus 103 ~~~~~~~w~~~ 113 (139)
T d2oika1 103 RHFPNSVWGET 113 (139)
T ss_dssp SSTTSCTTSCC
T ss_pred CCCCcceeCCC
Confidence 76666554433
>d1kpfa_ d.13.1.1 (A:) Protein kinase C inhibitor-1, PKCI-1 {Human (Homo sapiens) [TaxId: 9606]}
Back Show information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: HIT-like
superfamily: HIT-like
family: HIT (HINT, histidine triad) family of protein kinase-interacting proteins
domain: Protein kinase C inhibitor-1, PKCI-1
species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.92 E-value=2.6e-26 Score=140.07 Aligned_cols=80 Identities=18% Similarity=0.232 Sum_probs=74.0
Q ss_pred CCCCCccccEEEeCCcccCCcCCCCHHHHHHHHHHHHHHHHHHHhhcCCCceEEEEecCCCCCCCcceEEEEEeeCCCCC
Q 034378 3 SIEQYAFGPFKIDPRRDAVRFGDLTADETRDLWLTAQTVGTQLESYHKASSLAFAIQDGPQAGQTVPHVHIHIVPRKAAS 82 (96)
Q Consensus 3 ~~~p~~~g~~lIiPk~H~~~l~dl~~~e~~~l~~~~~~v~~~l~~~~~~~~~~i~~~~~~~~gq~v~H~HiHiiPr~~~d 82 (96)
.++|.++||+||+||+|++++.+|++++...+..+++.+.+.+++...+++||+++|+|+.+||+|+|+|+||+||++..
T Consensus 28 D~~P~~~gH~LViPk~H~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~n~g~~agq~V~HlH~Hiip~~~l~ 107 (111)
T d1kpfa_ 28 DISPQAPTHFLVIPKKHISQISVAEDDDESLLGHLMIVGKKCAADLGLNKGYRMVVNEGSDGGQSVYHVHLHVLGGRQMH 107 (111)
T ss_dssp CSSCSSSEEEEEEESSCCSCGGGCCGGGHHHHHHHHHHHHHHHHHTTCTTCEEEECCCHHHHTCCSSSCCEEEEESSCCC
T ss_pred cCCCCCCceEEEeecchhcchhhhhhHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEeCCccCCcccceeEEEEeCCCcCC
Confidence 46899999999999999999999999999889989988888888888888999999999999999999999999997754
>d1xqua_ d.13.1.1 (A:) Putative hydrolase {Clostridium thermocellum [TaxId: 1515]}
Back Show information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: HIT-like
superfamily: HIT-like
family: HIT (HINT, histidine triad) family of protein kinase-interacting proteins
domain: Putative hydrolase
species: Clostridium thermocellum [TaxId: 1515]
Probab=99.91 E-value=4.5e-25 Score=134.75 Aligned_cols=81 Identities=19% Similarity=0.186 Sum_probs=74.1
Q ss_pred CCCCCccccEEEeCCcccCCcCCCCHHHHHHHHHHHHHHHHHHHhh-cCCCceEEEEecCCCCCCCcceEEEEEeeCCCC
Q 034378 3 SIEQYAFGPFKIDPRRDAVRFGDLTADETRDLWLTAQTVGTQLESY-HKASSLAFAIQDGPQAGQTVPHVHIHIVPRKAA 81 (96)
Q Consensus 3 ~~~p~~~g~~lIiPk~H~~~l~dl~~~e~~~l~~~~~~v~~~l~~~-~~~~~~~i~~~~~~~~gq~v~H~HiHiiPr~~~ 81 (96)
+..|.+|||+||+||+|+.++.+|++++..++..+++.+.+++++. ++.++||+.+|+|+.+||+|+|+|+||+||++.
T Consensus 30 d~~P~~~gH~LViPk~H~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~agq~v~HlH~Hvip~~~~ 109 (113)
T d1xqua_ 30 DINPAAPVHVLIIPKEHIANVKEINESNAQILIDIHKAANKVAEDLGIAEKGYRLITNCGVAAGQTVFHLHYHLLGGVDM 109 (113)
T ss_dssp CSSCSSSEEEEEEESSCCSSGGGCCTTTTTHHHHHHHHHHHHHHHTTCTTTCEEEECCCSTTTTCCSCSCCEEEEESSCC
T ss_pred CCCCCCCceEEEeecccccchhhccchhHHHHHHHHHHHHHHHHhhccCCCceEEEEeCccccccccCeeEEEEeCcccc
Confidence 5689999999999999999999999999999999999888888864 667899999999999999999999999999986
Q ss_pred CC
Q 034378 82 SS 83 (96)
Q Consensus 82 d~ 83 (96)
++
T Consensus 110 ~p 111 (113)
T d1xqua_ 110 GP 111 (113)
T ss_dssp CS
T ss_pred CC
Confidence 53
>d1z84a2 d.13.1.2 (A:196-351) Galactose-1-phosphate uridylyltransferase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Back Show information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: HIT-like
superfamily: HIT-like
family: Hexose-1-phosphate uridylyltransferase
domain: Galactose-1-phosphate uridylyltransferase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=99.90 E-value=3.1e-24 Score=137.37 Aligned_cols=91 Identities=15% Similarity=0.111 Sum_probs=82.5
Q ss_pred CCCCCccccEEEeCCcccCCcCCCCHHHHHHHHHHHHHHHHHHHhhcCCCceEEEEecCCCCC----CCcceEEEEEeeC
Q 034378 3 SIEQYAFGPFKIDPRRDAVRFGDLTADETRDLWLTAQTVGTQLESYHKASSLAFAIQDGPQAG----QTVPHVHIHIVPR 78 (96)
Q Consensus 3 ~~~p~~~g~~lIiPk~H~~~l~dl~~~e~~~l~~~~~~v~~~l~~~~~~~~~~i~~~~~~~~g----q~v~H~HiHiiPr 78 (96)
+..|.+|||+||+||+|+.++.+|+++++.+|+.+++++.++|++.++..+||+++|+++..| +.++|||+|++||
T Consensus 44 p~~p~~p~h~lIiPk~h~~~~~~l~~~e~~~l~~~~~~v~~~l~~~~~~~~~n~~~~~~p~~~~~~~~~~~H~hi~~~Pr 123 (156)
T d1z84a2 44 PFAATYPFEIWIIPKDHSSHFHHLDDVKAVDLGGLLKLMLQKIAKQLNDPPYNYMIHTSPLKVTESQLPYTHWFLQIVPQ 123 (156)
T ss_dssp CTTCSSTTCEEEEESSCCSCGGGCCHHHHHHHHHHHHHHHHHHHHHTTSCCEEEEEECCCTTCCGGGGGGCCCEEEEEEC
T ss_pred ccCCCcCcEEEEEecchhhhhccCCHHHHHHHHHHHHHHHHHHHHhcCCCcccHhhhcCCCCCcccCceeEEEEEEecCC
Confidence 467999999999999999999999999999999999999999999999999999999987654 5568999999999
Q ss_pred CC--CCCCCCCCccccc
Q 034378 79 KA--ASSEENDGNVSWD 93 (96)
Q Consensus 79 ~~--~d~~~~~~~~~~~ 93 (96)
.+ +++|.|+|.|+.|
T Consensus 124 ~~~~aG~E~~tg~~~n~ 140 (156)
T d1z84a2 124 LSGVGGFEIGTGCYINP 140 (156)
T ss_dssp CCCCCHHHHHHSCCEES
T ss_pred CCccccceeecccccCC
Confidence 76 6788888888765
>d1guqa2 d.13.1.2 (A:178-348) Galactose-1-phosphate uridylyltransferase {Escherichia coli [TaxId: 562]}
Back Show information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: HIT-like
superfamily: HIT-like
family: Hexose-1-phosphate uridylyltransferase
domain: Galactose-1-phosphate uridylyltransferase
species: Escherichia coli [TaxId: 562]
Probab=99.83 E-value=1.2e-20 Score=121.73 Aligned_cols=77 Identities=18% Similarity=0.226 Sum_probs=70.7
Q ss_pred CCCCCccccEEEeCCcccCCcCCCCHHHHHHHHHHHHHHHHHHHhhcCCC-ceEEEEecCCCCC--CCcceEEEEEeeCC
Q 034378 3 SIEQYAFGPFKIDPRRDAVRFGDLTADETRDLWLTAQTVGTQLESYHKAS-SLAFAIQDGPQAG--QTVPHVHIHIVPRK 79 (96)
Q Consensus 3 ~~~p~~~g~~lIiPk~H~~~l~dl~~~e~~~l~~~~~~v~~~l~~~~~~~-~~~i~~~~~~~~g--q~v~H~HiHiiPr~ 79 (96)
+..|.+|||+||+||+|+.++.+|+++++.+|+.+++++.+++++.++++ +||+.+|.++.++ +.++|+|+||+||.
T Consensus 47 ~~~p~~p~h~lIiPk~h~~~~~~l~~~e~~~L~~~~~~v~~~l~~~~~~~~~y~~~~~~~p~~~~~~~~~H~Hihi~Pr~ 126 (171)
T d1guqa2 47 PYWAAWPFETLLLPKAHVLRITDLTDAQRSDLALALKKLTSRYDNLFQCSFPYSMGWHGAPFNGEENQHWQLHAHFYPPL 126 (171)
T ss_dssp CTTCCSTTCEEEEESSCCSSGGGCCHHHHHHHHHHHHHHHHHHHHHHTSCCCEEEEEECCCSSSSCCTTCCCEEEEECCE
T ss_pred cCCCCCcceEEEecchhcCChhhCCHHHHHHHHHHHHHHHHHHHHhccCCcchhhhhhcCccccCCCceeEEEEEEccCc
Confidence 46899999999999999999999999999999999999999999999876 7999999998764 56689999999974
>d1vlra1 d.13.1.3 (A:146-337) mRNA decapping enzyme DcpS C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}
Back Show information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: HIT-like
superfamily: HIT-like
family: mRNA decapping enzyme DcpS C-terminal domain
domain: mRNA decapping enzyme DcpS C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.12 E-value=2.2e-10 Score=74.55 Aligned_cols=71 Identities=14% Similarity=0.024 Sum_probs=59.4
Q ss_pred CCCccccEEEeCCcc-cCCcCCCCHHHHHHHHHHHHHHHHHHHhhcC--CCceEEEEecCCCCCCCcceEEEEEeeCC
Q 034378 5 EQYAFGPFKIDPRRD-AVRFGDLTADETRDLWLTAQTVGTQLESYHK--ASSLAFAIQDGPQAGQTVPHVHIHIVPRK 79 (96)
Q Consensus 5 ~p~~~g~~lIiPk~H-~~~l~dl~~~e~~~l~~~~~~v~~~l~~~~~--~~~~~i~~~~~~~~gq~v~H~HiHiiPr~ 79 (96)
+|...-|+|+||||| +.++.||+++...-|..+.+.+.+.+.+.+| .+++.+++|.+ ++++|+|+||+-..
T Consensus 65 ~~~~~lhlL~I~~r~~I~SlrDL~~ehlpLL~~m~~~~~~~i~~~~gi~~~~~Rig~H~~----PSv~HLHlHvi~~~ 138 (192)
T d1vlra1 65 QQLDDLYLIAICHRRGIRSLRDLTPEHLPLLRNILREGQEAILKRYQVTGDRLRVYLHYL----PSYYHLHVHFTALG 138 (192)
T ss_dssp SCSTTCEEEEEESSSCCCSGGGCCGGGHHHHHHHHHHHHHHHHHHHCCCGGGEEEEEESS----CSSSSCEEEEEETT
T ss_pred CcccCeEEEEEEccCCCCChHHCCHhHHHHHHHHHHHHHHHHHHHhCCChhheEEEEECC----CCEeeeEEEEEecc
Confidence 488899999999988 9999999999888777777777777777665 45899999865 47999999999743
>d1z84a1 d.13.1.2 (A:23-195) Galactose-1-phosphate uridylyltransferase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Back Show information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: HIT-like
superfamily: HIT-like
family: Hexose-1-phosphate uridylyltransferase
domain: Galactose-1-phosphate uridylyltransferase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=97.83 E-value=4e-05 Score=48.40 Aligned_cols=66 Identities=14% Similarity=0.272 Sum_probs=52.1
Q ss_pred EEEeCCcccCCcCCCCHHHHHHHHHHHHHHHHHHHhhcCCCceEEEEecCCCCCCCcceEEEEEee
Q 034378 12 FKIDPRRDAVRFGDLTADETRDLWLTAQTVGTQLESYHKASSLAFAIQDGPQAGQTVPHVHIHIVP 77 (96)
Q Consensus 12 ~lIiPk~H~~~l~dl~~~e~~~l~~~~~~v~~~l~~~~~~~~~~i~~~~~~~~gq~v~H~HiHiiP 77 (96)
++|...+|-.++.+++.+++.+++++.++-.+.|.+.=+..=+.+.-|.|+.+|.++.|-|.+|+.
T Consensus 104 VIi~sp~H~~~l~~~~~e~i~~v~~~~~~r~~~l~~~~~i~yV~iF~N~G~~aGaSl~HPH~QI~a 169 (173)
T d1z84a1 104 VVIESPVHSIQLSDIDPVGIGDILIAYKKRINQIAQHDSINYIQVFKNQGASAGASMSHSHSQMMA 169 (173)
T ss_dssp EEECCSSSSCCGGGSCHHHHHHHHHHHHHHHHHHTTCTTCCEEEEEEEESGGGTCCCSSCEEEEEE
T ss_pred eEEeCccccCChhhCCHHHHHHHHHHHHHHHHHHHcCCCceEEEEEeecCccCccCCCCCCeeeee
Confidence 666689999999999999999999988877777755212222344567799999999999999985
>d1guqa1 d.13.1.2 (A:2-177) Galactose-1-phosphate uridylyltransferase {Escherichia coli [TaxId: 562]}
Back Show information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: HIT-like
superfamily: HIT-like
family: Hexose-1-phosphate uridylyltransferase
domain: Galactose-1-phosphate uridylyltransferase
species: Escherichia coli [TaxId: 562]
Probab=97.39 E-value=0.00031 Score=44.23 Aligned_cols=65 Identities=14% Similarity=0.062 Sum_probs=51.8
Q ss_pred cEEEeCCcccCCcCCCCHHHHHHHHHHHHHHHHHHHhhcCCCceEEEEecCCCCCCCcceEEEEEee
Q 034378 11 PFKIDPRRDAVRFGDLTADETRDLWLTAQTVGTQLESYHKASSLAFAIQDGPQAGQTVPHVHIHIVP 77 (96)
Q Consensus 11 ~~lIiPk~H~~~l~dl~~~e~~~l~~~~~~v~~~l~~~~~~~~~~i~~~~~~~~gq~v~H~HiHiiP 77 (96)
+++|..-+|..++.+++.+++..++.+.+.-.+.+.+.. .=+.+.-|.|+.+|.+..|-|.+|+.
T Consensus 106 eVIi~sp~H~~~l~~~~~~~i~~vl~a~~~R~~~l~~~i--~yv~iFkN~G~~aGaSl~HPH~QI~a 170 (176)
T d1guqa1 106 RVICFSPDHSKTLPELSVAALTEIVKTWQEQTAELGKTY--PWVQVFENKGAAMGCSNPHPGGQIWA 170 (176)
T ss_dssp EEEESCSCTTCCGGGSCHHHHHHHHHHHHHHHHHHHHHC--SEEEEEEEESGGGTCSCCSSEEEEEE
T ss_pred eEEEECcccccChhhCCHHHHHHHHHHHHHHHHHhcCCC--CEEEEEeecCccccCCCCCCCeeeee
Confidence 456668999999999999999999998887666666532 22345567799999999999999985
>d2pofa1 d.13.1.4 (A:31-250) CDP-diacylglycerol pyrophosphatase CDH {Escherichia coli [TaxId: 562]}
Back Show information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: HIT-like
superfamily: HIT-like
family: CDH-like
domain: CDP-diacylglycerol pyrophosphatase CDH
species: Escherichia coli [TaxId: 562]
Probab=96.77 E-value=0.00068 Score=44.13 Aligned_cols=69 Identities=17% Similarity=0.172 Sum_probs=53.6
Q ss_pred CCccccEEEeCCcccCCcCC------CCHHHHHHHHHHHHHHHHHHHhhcCCCceEEEEecCCCCCCCcceEEEEEe
Q 034378 6 QYAFGPFKIDPRRDAVRFGD------LTADETRDLWLTAQTVGTQLESYHKASSLAFAIQDGPQAGQTVPHVHIHIV 76 (96)
Q Consensus 6 p~~~g~~lIiPk~H~~~l~d------l~~~e~~~l~~~~~~v~~~l~~~~~~~~~~i~~~~~~~~gq~v~H~HiHii 76 (96)
+.-|.|.|+||...++-+.+ -++..+.+-+..-..|.+++++-+..+.+.+.+|.. .|.+-.|+||||=
T Consensus 40 ~~G~~qyLliPt~rIsGIEsP~Ll~~~~pnyf~~AW~aR~~v~~~~g~~lpd~~lsLaINS~--~gRSQdQLHIHI~ 114 (220)
T d2pofa1 40 LNGPLQYLLMPTYRINGTESPLLTDPSTPNFFWLAWQARDFMSKKYGQPVPDRAVSLAINSR--TGRTQNHFHIHIS 114 (220)
T ss_dssp SSSSSCEEEEESSCCCSTTCGGGGSTTSCCHHHHHHHTTHHHHHHHTSCCCGGGEEEEEBCG--GGCSCCSCCEEEE
T ss_pred CCCCceEEEeecccccCccChhhcCCCCccHHHHHHHHhHHHHHHhCCCCCchheEEEecCC--CCcCccceeeehh
Confidence 45678999999999887766 333467777777778888888877667888998864 5777889999974
>d1ml4a1 c.78.1.1 (A:2-151) Aspartate carbamoyltransferase catalytic subunit {Archaeon Pyrococcus abyssi [TaxId: 29292]}
Back Show information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Aspartate carbamoyltransferase catalytic subunit
species: Archaeon Pyrococcus abyssi [TaxId: 29292]
Probab=84.92 E-value=0.7 Score=27.44 Aligned_cols=33 Identities=18% Similarity=0.364 Sum_probs=28.4
Q ss_pred CCcccCCcCCCCHHHHHHHHHHHHHHHHHHHhh
Q 034378 16 PRRDAVRFGDLTADETRDLWLTAQTVGTQLESY 48 (96)
Q Consensus 16 Pk~H~~~l~dl~~~e~~~l~~~~~~v~~~l~~~ 48 (96)
+.||.-++.|++.+|+.++.+.++++.+..++.
T Consensus 3 ~~kh~l~~~dls~~ei~~ll~~A~~lk~~~~~~ 35 (150)
T d1ml4a1 3 KGRDVISIRDFSKEDIETVLATAERLERELKEK 35 (150)
T ss_dssp TTCCBCCGGGCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCcCCcchhhCCHHHHHHHHHHHHHHHHhhccc
Confidence 578999999999999999999998887766543
>d1duvg1 c.78.1.1 (G:1-150) Ornithine transcarbamoylase {Escherichia coli [TaxId: 562]}
Back Show information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Ornithine transcarbamoylase
species: Escherichia coli [TaxId: 562]
Probab=82.20 E-value=0.98 Score=26.71 Aligned_cols=32 Identities=19% Similarity=0.199 Sum_probs=27.7
Q ss_pred CCcccCCcCCCCHHHHHHHHHHHHHHHHHHHh
Q 034378 16 PRRDAVRFGDLTADETRDLWLTAQTVGTQLES 47 (96)
Q Consensus 16 Pk~H~~~l~dl~~~e~~~l~~~~~~v~~~l~~ 47 (96)
..||.-++.||+.+|+.++.+.++++.+....
T Consensus 4 ~~kh~l~i~dls~~ei~~ll~~A~~~k~~~~~ 35 (150)
T d1duvg1 4 YHKHFLKLLDFTPAELNSLLQLAAKLKADKKS 35 (150)
T ss_dssp TTCCBSCGGGSCHHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCcCchhhCCHHHHHHHHHHHHHHHhhhhc
Confidence 47899999999999999999999998765554
