Citrus Sinensis ID: 034400

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-----
Protein Sequence
MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRCAACAYPAARKRTYNWSVKAIRRKTTGTGRMRYLRHVPRRFKSGFREGTQAAPRKKGAAASA
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccccccccccccccccccccccHHHHcccccccccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccHHHHcccccccEEEccccccEEEEccccEEcccccccccccccccHHHHHHcccccccHHHHHHHHHHHHHcccccccccccccccHHccc
Coil and Loop (DISEMBL)
mgkgtgsfgkrrnkthtlcvrcgrrsfhlqksrcaacaypaarkrtyNWSVKAIRRKTtgtgrmrylrhvprrfksgfregtqaaprkkgaaasa
Flexible Loop (DISEMBL)
mgkgtgsfgkrrnkthtlcvrcgrrsfhlqksrcaacaypaarkrtynwsvkairrkttgtgrmrylrhvprrfksgfregtqaaprkkgaaasa
Low Complexity Region (SEG)
MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRCAACAYPAARKRTYNWSVKAIRRKTTGTGRMRYLRHVPRRFKSGFREGTQaaprkkgaaasa
Disordered region (IsUnstruct)
**************THTLCVRCGRRSFHLQKSRCAACAYPAARKRTYNWSVKAIRRKTTGTGRMRYLRHVP************************
Disordered Region (DISOPRED)
***GTGSFGKRRNKTHTLCVRCGRRSFHLQKSRCAACAYPAARKR***************TGRMRYLRHVPRRFKS*******************
Disordered Region (DISEMBL)
**********RRNKTHTLCVRCGRRSFHLQKSRCAACAYPAARKRTYNWSVKAIRRKTTGTGRMRYLRHVPRRFKSGF*****************
Disordered Region (DISPRO)
*************KTHTLCVRCGRRSFHLQKSRCAACAYPAARKRTYNWSVKAIRR**TGTGRMRY*RHVPRRFKSG******************
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRCAACAYPAARKRTYNWSVKAIRRKTTGTGRMRYLRHVPRRFKSGFREGTQAAPRKKGAAASA
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	95	2.2.26 [Sep-21-2011]
Q8LEM8	95	60S ribosomal protein L37	yes	no	1.0	1.0	0.884	1e-43
Q43292	95	60S ribosomal protein L37	yes	no	1.0	1.0	0.884	2e-43
Q8LFH7	95	60S ribosomal protein L37	no	no	1.0	1.0	0.884	3e-43
Q9VXX8	93	Probable 60S ribosomal pr	yes	no	0.968	0.989	0.717	1e-31
P49166	88	60S ribosomal protein L37	yes	no	0.863	0.931	0.719	3e-29
Q962S7	92	60S ribosomal protein L37	N/A	no	0.968	1.0	0.684	3e-29
P51402	88	60S ribosomal protein L37	no	no	0.894	0.965	0.682	8e-29
Q90YT1	97	60S ribosomal protein L37	N/A	no	0.926	0.907	0.693	2e-28
P61928	97	60S ribosomal protein L37	yes	no	0.926	0.907	0.693	2e-28
Q9D823	97	60S ribosomal protein L37	yes	no	0.926	0.907	0.693	2e-28

>sp|Q8LEM8|RL373_ARATH 60S ribosomal protein L37-3 OS=Arabidopsis thaliana GN=RPL37C PE=3 SV=1

 Score =  174 bits (442), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 84/95 (88%), Positives = 92/95 (96%)

Query: 1  MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRCAACAYPAARKRTYNWSVKAIRRKTTG 60
          MGKGTGSFGKRRNK+HTLCVRCGRRSFH+QKSRC+ACAYPAARKRTYNWSVKAIRRKTTG
Sbjct: 1  MGKGTGSFGKRRNKSHTLCVRCGRRSFHIQKSRCSACAYPAARKRTYNWSVKAIRRKTTG 60

Query: 61 TGRMRYLRHVPRRFKSGFREGTQAAPRKKGAAASA 95
          TGRMRYLR+VPRRFK+GFREGT+A PR K +A+SA
Sbjct: 61 TGRMRYLRNVPRRFKTGFREGTEAKPRSKASASSA 95

Binds to the 23S rRNA.
Arabidopsis thaliana (taxid: 3702)

>sp|Q43292|RL372_ARATH 60S ribosomal protein L37-2 OS=Arabidopsis thaliana GN=RPL37B PE=3 SV=2

 Score =  174 bits (440), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 84/95 (88%), Positives = 91/95 (95%)

Query: 1  MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRCAACAYPAARKRTYNWSVKAIRRKTTG 60
          M KGTGSFGKRRNK+HTLCVRCGRRSFH+QKSRC+ACAYPAARKRTYNWSVKAIRRKTTG
Sbjct: 1  MTKGTGSFGKRRNKSHTLCVRCGRRSFHIQKSRCSACAYPAARKRTYNWSVKAIRRKTTG 60

Query: 61 TGRMRYLRHVPRRFKSGFREGTQAAPRKKGAAASA 95
          TGRMRYLR+VPRRFK+GFREGT+A PR KG A+SA
Sbjct: 61 TGRMRYLRNVPRRFKTGFREGTEAKPRNKGVASSA 95

Binds to the 23S rRNA.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8LFH7|RL371_ARATH 60S ribosomal protein L37-1 OS=Arabidopsis thaliana GN=RPL37A PE=3 SV=1

 Score =  173 bits (438), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 84/95 (88%), Positives = 91/95 (95%)

Query: 1  MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRCAACAYPAARKRTYNWSVKAIRRKTTG 60
          MGKGTGSFGKRRNK+HTLCVRCGRRSFH+QKSRC+ACAYPAARKRTYNWSVKAIRRKTTG
Sbjct: 1  MGKGTGSFGKRRNKSHTLCVRCGRRSFHIQKSRCSACAYPAARKRTYNWSVKAIRRKTTG 60

Query: 61 TGRMRYLRHVPRRFKSGFREGTQAAPRKKGAAASA 95
          TGRMRYLR+VPRRFK+ FREGTQA PR K AA+S+
Sbjct: 61 TGRMRYLRNVPRRFKTCFREGTQATPRNKAAASSS 95

Binds to the 23S rRNA.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9VXX8|RL371_DROME Probable 60S ribosomal protein L37-A OS=Drosophila melanogaster GN=RpL37a PE=3 SV=1

 Score =  134 bits (338), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 66/92 (71%), Positives = 77/92 (83%)

Query: 1  MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRCAACAYPAARKRTYNWSVKAIRRKTTG 60
          M KGT SFGKR NKTHTLC RCGR S+H+QKS CA C YPAA+ R+YNWSVKA RRKTTG
Sbjct: 1  MTKGTSSFGKRHNKTHTLCRRCGRSSYHIQKSTCAQCGYPAAKLRSYNWSVKAKRRKTTG 60

Query: 61 TGRMRYLRHVPRRFKSGFREGTQAAPRKKGAA 92
          TGRM++L+ V RRF++GFREGTQA P+K  A+
Sbjct: 61 TGRMQHLKVVRRRFRNGFREGTQAKPKKAVAS 92

Binds to the 23S rRNA.

Drosophila melanogaster (taxid: 7227)

>sp|P49166|RL37A_YEAST 60S ribosomal protein L37-A OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RPL37A PE=1 SV=2

 Score =  127 bits (318), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 59/82 (71%), Positives = 69/82 (84%)

Query: 1  MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRCAACAYPAARKRTYNWSVKAIRRKTTG 60
          MGKGT SFGKR NK+HTLC RCGRRSFH+QK  C++C YPAA+ R+YNW  KA RR TTG
Sbjct: 1  MGKGTPSFGKRHNKSHTLCNRCGRRSFHVQKKTCSSCGYPAAKTRSYNWGAKAKRRHTTG 60

Query: 61 TGRMRYLRHVPRRFKSGFREGT 82
          TGRMRYL+HV RRFK+GF+ G+
Sbjct: 61 TGRMRYLKHVSRRFKNGFQTGS 82

Binds to the 23S rRNA.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

>sp|Q962S7|RL37_SPOFR 60S ribosomal protein L37 OS=Spodoptera frugiperda GN=RpL37 PE=3 SV=3

 Score =  126 bits (317), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 65/95 (68%), Positives = 77/95 (81%), Gaps = 3/95 (3%)

Query: 1  MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRCAACAYPAARKRTYNWSVKAIRRKTTG 60
          M KGT SFGKRRNKTHTLC RCGR S+H+QKS+CA C YPAA+ R+Y+WSVKA RRKTTG
Sbjct: 1  MTKGTSSFGKRRNKTHTLCRRCGRSSYHIQKSKCAQCGYPAAKLRSYHWSVKAKRRKTTG 60

Query: 61 TGRMRYLRHVPRRFKSGFREGTQAAPRKKGAAASA 95
          TGRMR+L+ V RRF++GF+EG    P  K A AS+
Sbjct: 61 TGRMRHLKIVRRRFRNGFKEG---KPTPKKAVASS 92

Binds to the 23S rRNA.

Spodoptera frugiperda (taxid: 7108)

>sp|P51402|RL37B_YEAST 60S ribosomal protein L37-B OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RPL37B PE=1 SV=2

 Score =  125 bits (314), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 58/85 (68%), Positives = 71/85 (83%)

Query: 1  MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRCAACAYPAARKRTYNWSVKAIRRKTTG 60
          MGKGT SFGKR NK+HTLC RCGRRSFH+QK  C++C YP+A+ R++NW+ KA RR TTG
Sbjct: 1  MGKGTPSFGKRHNKSHTLCNRCGRRSFHVQKKTCSSCGYPSAKTRSHNWAAKAKRRHTTG 60

Query: 61 TGRMRYLRHVPRRFKSGFREGTQAA 85
          TGRMRYL+HV RRFK+GF+ G+  A
Sbjct: 61 TGRMRYLKHVSRRFKNGFQTGSAKA 85

Binds to the 23S rRNA.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

>sp|Q90YT1|RL37_ICTPU 60S ribosomal protein L37 OS=Ictalurus punctatus GN=rpl37 PE=3 SV=3

 Score =  124 bits (310), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 61/88 (69%), Positives = 70/88 (79%)

Query: 1  MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRCAACAYPAARKRTYNWSVKAIRRKTTG 60
          M KGT SFGKRRNKTHTLC RCG +++HLQKS C  C YPA RKR YNWS KA RR TTG
Sbjct: 1  MTKGTSSFGKRRNKTHTLCRRCGSKAYHLQKSTCGKCGYPAKRKRKYNWSAKAKRRSTTG 60

Query: 61 TGRMRYLRHVPRRFKSGFREGTQAAPRK 88
          TGRMR+++ V RRF++GFREGT   PR+
Sbjct: 61 TGRMRHMKVVFRRFRNGFREGTVPKPRR 88

Binds to the 23S rRNA.

Ictalurus punctatus (taxid: 7998)

>sp|P61928|RL37_RAT 60S ribosomal protein L37 OS=Rattus norvegicus GN=Rpl37 PE=1 SV=2

 Score =  124 bits (310), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 61/88 (69%), Positives = 69/88 (78%)

Query: 1  MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRCAACAYPAARKRTYNWSVKAIRRKTTG 60
          M KGT SFGKRRNKTHTLC RCG +++HLQKS C  C YPA RKR YNWS KA RR TTG
Sbjct: 1  MTKGTSSFGKRRNKTHTLCRRCGSKAYHLQKSTCGKCGYPAKRKRKYNWSAKAKRRNTTG 60

Query: 61 TGRMRYLRHVPRRFKSGFREGTQAAPRK 88
          TGRMR+L+ V RRF+ GFREGT   P++
Sbjct: 61 TGRMRHLKIVYRRFRHGFREGTTPKPKR 88

Binds to the 23S rRNA.

Rattus norvegicus (taxid: 10116)

>sp|Q9D823|RL37_MOUSE 60S ribosomal protein L37 OS=Mus musculus GN=Rpl37 PE=2 SV=3

 Score =  124 bits (310), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 61/88 (69%), Positives = 69/88 (78%)

Query: 1  MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRCAACAYPAARKRTYNWSVKAIRRKTTG 60
          M KGT SFGKRRNKTHTLC RCG +++HLQKS C  C YPA RKR YNWS KA RR TTG
Sbjct: 1  MTKGTSSFGKRRNKTHTLCRRCGSKAYHLQKSTCGKCGYPAKRKRKYNWSAKAKRRNTTG 60

Query: 61 TGRMRYLRHVPRRFKSGFREGTQAAPRK 88
          TGRMR+L+ V RRF+ GFREGT   P++
Sbjct: 61 TGRMRHLKIVYRRFRHGFREGTTPKPKR 88

Binds to the 23S rRNA.

Mus musculus (taxid: 10090)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	95
449448036	95	PREDICTED: 60S ribosomal protein L37-2-l	1.0	1.0	0.957	1e-44
255549998	96	60S ribosomal protein L37, putative [Ric	1.0	0.989	0.936	1e-44
257219570	96	ribosomal protein L37 [Jatropha curcas]	1.0	0.989	0.947	1e-44
449465274	95	PREDICTED: 60S ribosomal protein L37-3-l	1.0	1.0	0.936	2e-44
388519755	95	unknown [Lotus japonicus]	1.0	1.0	0.936	1e-43
356526139	95	PREDICTED: 60S ribosomal protein L37-3 [	1.0	1.0	0.936	1e-43
388520321	95	unknown [Lotus japonicus]	0.989	0.989	0.946	2e-43
224059086	95	predicted protein [Populus trichocarpa]	1.0	1.0	0.936	2e-43
356550533	95	PREDICTED: 60S ribosomal protein L37-3-l	1.0	1.0	0.926	5e-43
224073947	95	predicted protein [Populus trichocarpa]	1.0	1.0	0.926	6e-43

>gi|449448036|ref|XP_004141772.1| PREDICTED: 60S ribosomal protein L37-2-like isoform 1 [Cucumis sativus] gi|449448038|ref|XP_004141773.1| PREDICTED: 60S ribosomal protein L37-2-like isoform 2 [Cucumis sativus] gi|449491733|ref|XP_004158987.1| PREDICTED: 60S ribosomal protein L37-2-like isoform 1 [Cucumis sativus] gi|449491736|ref|XP_004158988.1| PREDICTED: 60S ribosomal protein L37-2-like isoform 2 [Cucumis sativus]

 Score =  183 bits (464), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 91/95 (95%), Positives = 93/95 (97%)

Query: 1  MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRCAACAYPAARKRTYNWSVKAIRRKTTG 60
          MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRCAACA+PAARKR YNWSVKAIRRKTTG
Sbjct: 1  MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRCAACAFPAARKRKYNWSVKAIRRKTTG 60

Query: 61 TGRMRYLRHVPRRFKSGFREGTQAAPRKKGAAASA 95
          TGRMRYLRHVPRRFKSGFREGT+AAPR KGAAASA
Sbjct: 61 TGRMRYLRHVPRRFKSGFREGTEAAPRNKGAAASA 95

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255549998|ref|XP_002516050.1| 60S ribosomal protein L37, putative [Ricinus communis] gi|223544955|gb|EEF46470.1| 60S ribosomal protein L37, putative [Ricinus communis]

 Score =  183 bits (464), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 89/95 (93%), Positives = 95/95 (100%)

Query: 1  MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRCAACAYPAARKRTYNWSVKAIRRKTTG 60
          MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRC+ACAYPAARKR+YNWSVKAIRRKTTG
Sbjct: 1  MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRCSACAYPAARKRSYNWSVKAIRRKTTG 60

Query: 61 TGRMRYLRHVPRRFKSGFREGTQAAPRKKGAAASA 95
          TGRMRYLRH+PRRFKSGFREGT+AAPRKKGAAA++
Sbjct: 61 TGRMRYLRHLPRRFKSGFREGTEAAPRKKGAAAAS 95

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|257219570|gb|ACV50438.1| ribosomal protein L37 [Jatropha curcas]

 Score =  183 bits (464), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 90/95 (94%), Positives = 94/95 (98%)

Query: 1  MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRCAACAYPAARKRTYNWSVKAIRRKTTG 60
          MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRC+ACA+PAARKR YNWSVKAIRRKTTG
Sbjct: 1  MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRCSACAFPAARKRKYNWSVKAIRRKTTG 60

Query: 61 TGRMRYLRHVPRRFKSGFREGTQAAPRKKGAAASA 95
          TGRMRYLRHVPRRFKSGFREGTQAAPRKKGAAA++
Sbjct: 61 TGRMRYLRHVPRRFKSGFREGTQAAPRKKGAAATS 95

Source: Jatropha curcas

Species: Jatropha curcas

Genus: Jatropha

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449465274|ref|XP_004150353.1| PREDICTED: 60S ribosomal protein L37-3-like [Cucumis sativus] gi|449516163|ref|XP_004165117.1| PREDICTED: 60S ribosomal protein L37-3-like [Cucumis sativus]

 Score =  182 bits (463), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 89/95 (93%), Positives = 94/95 (98%)

Query: 1  MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRCAACAYPAARKRTYNWSVKAIRRKTTG 60
          MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRC+ACA+PAARKRTYNWSVKAIRRKTTG
Sbjct: 1  MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRCSACAFPAARKRTYNWSVKAIRRKTTG 60

Query: 61 TGRMRYLRHVPRRFKSGFREGTQAAPRKKGAAASA 95
          TGRMRYLRHVPRRFKSGFREGT+AAPR KGA++SA
Sbjct: 61 TGRMRYLRHVPRRFKSGFREGTEAAPRSKGASSSA 95

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388519755|gb|AFK47939.1| unknown [Lotus japonicus]

 Score =  180 bits (456), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 89/95 (93%), Positives = 93/95 (97%)

Query: 1  MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRCAACAYPAARKRTYNWSVKAIRRKTTG 60
          MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRCAACA+PAARKR YNWSVKAIRRKTTG
Sbjct: 1  MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRCAACAFPAARKRKYNWSVKAIRRKTTG 60

Query: 61 TGRMRYLRHVPRRFKSGFREGTQAAPRKKGAAASA 95
          TGRMRYLR+VPRRFKSGFREGT+AAPR KGAAA+A
Sbjct: 61 TGRMRYLRNVPRRFKSGFREGTEAAPRNKGAAATA 95

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356526139|ref|XP_003531677.1| PREDICTED: 60S ribosomal protein L37-3 [Glycine max]

 Score =  179 bits (455), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 89/95 (93%), Positives = 93/95 (97%)

Query: 1  MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRCAACAYPAARKRTYNWSVKAIRRKTTG 60
          MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRC+ACAYPAAR R YNWSVKAIRRKTTG
Sbjct: 1  MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRCSACAYPAARTRKYNWSVKAIRRKTTG 60

Query: 61 TGRMRYLRHVPRRFKSGFREGTQAAPRKKGAAASA 95
          TGRMRYLR+VPRRFKSGFREGT+AAPRK+GAAASA
Sbjct: 61 TGRMRYLRNVPRRFKSGFREGTEAAPRKRGAAASA 95

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388520321|gb|AFK48222.1| unknown [Lotus japonicus]

 Score =  179 bits (455), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 89/94 (94%), Positives = 92/94 (97%)

Query: 1  MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRCAACAYPAARKRTYNWSVKAIRRKTTG 60
          MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRCAACA+PAARKR YNWSVKAIRRKTTG
Sbjct: 1  MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRCAACAFPAARKRKYNWSVKAIRRKTTG 60

Query: 61 TGRMRYLRHVPRRFKSGFREGTQAAPRKKGAAAS 94
          TGRMRYLR+VPRRFKSGFREGT+AAPR KGAAAS
Sbjct: 61 TGRMRYLRNVPRRFKSGFREGTEAAPRNKGAAAS 94

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224059086|ref|XP_002299709.1| predicted protein [Populus trichocarpa] gi|118486888|gb|ABK95278.1| unknown [Populus trichocarpa] gi|222846967|gb|EEE84514.1| predicted protein [Populus trichocarpa]

 Score =  179 bits (454), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 89/95 (93%), Positives = 92/95 (96%)

Query: 1  MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRCAACAYPAARKRTYNWSVKAIRRKTTG 60
          MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRC+ACA+PAARKR YNWS KAIRRKTTG
Sbjct: 1  MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRCSACAFPAARKRKYNWSEKAIRRKTTG 60

Query: 61 TGRMRYLRHVPRRFKSGFREGTQAAPRKKGAAASA 95
          TGRMRYLR+VPRRFKSGFREGTQA PRKKGAAASA
Sbjct: 61 TGRMRYLRNVPRRFKSGFREGTQAEPRKKGAAASA 95

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356550533|ref|XP_003543640.1| PREDICTED: 60S ribosomal protein L37-3-like [Glycine max]

 Score =  177 bits (450), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 88/95 (92%), Positives = 92/95 (96%)

Query: 1  MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRCAACAYPAARKRTYNWSVKAIRRKTTG 60
          MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRCAACA+PAAR R YNWSVKAIRRKTTG
Sbjct: 1  MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRCAACAFPAARTRKYNWSVKAIRRKTTG 60

Query: 61 TGRMRYLRHVPRRFKSGFREGTQAAPRKKGAAASA 95
          TGRMRYLR+VPRRFKSGFREGT+AAPRKKGAA +A
Sbjct: 61 TGRMRYLRNVPRRFKSGFREGTEAAPRKKGAATTA 95

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224073947|ref|XP_002304203.1| predicted protein [Populus trichocarpa] gi|118483729|gb|ABK93758.1| unknown [Populus trichocarpa] gi|222841635|gb|EEE79182.1| predicted protein [Populus trichocarpa]

 Score =  177 bits (449), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 88/95 (92%), Positives = 91/95 (95%)

Query: 1  MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRCAACAYPAARKRTYNWSVKAIRRKTTG 60
          MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRC+ACA+PAARKR YNWS KAIRRKTTG
Sbjct: 1  MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRCSACAFPAARKRKYNWSEKAIRRKTTG 60

Query: 61 TGRMRYLRHVPRRFKSGFREGTQAAPRKKGAAASA 95
          TGRMRYLR+VPRRFKSGFREGTQA PRKKG AASA
Sbjct: 61 TGRMRYLRNVPRRFKSGFREGTQAEPRKKGTAASA 95

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	95
TAIR|locus:2093407	95	AT3G16080 [Arabidopsis thalian	0.873	0.873	0.927	1.6e-40
TAIR|locus:2037833	95	AT1G15250 [Arabidopsis thalian	0.873	0.873	0.927	6.8e-40
TAIR|locus:2018184	95	AT1G52300 [Arabidopsis thalian	0.873	0.873	0.915	1.1e-39
FB|FBgn0030616	93	RpL37a "Ribosomal protein L37a	0.873	0.892	0.746	4.2e-31
SGD|S000004175	88	RPL37A "Ribosomal 60S subunit	0.863	0.931	0.719	8.8e-31
UNIPROTKB|E1C810	97	RPL37 "Uncharacterized protein	0.863	0.845	0.731	3.8e-30
SGD|S000002908	88	RPL37B "Ribosomal 60S subunit	0.863	0.931	0.695	4.9e-30
UNIPROTKB|P79244	97	RPL37 "60S ribosomal protein L	0.863	0.845	0.731	1e-29
UNIPROTKB|E2RR77	97	LOC612507 "Ribosomal protein L	0.863	0.845	0.731	1e-29
UNIPROTKB|P61927	97	RPL37 "60S ribosomal protein L	0.863	0.845	0.731	1e-29

TAIR|locus:2093407 AT3G16080 [Arabidopsis thaliana (taxid:3702)]

 Score = 431 (156.8 bits), Expect = 1.6e-40, P = 1.6e-40
 Identities = 77/83 (92%), Positives = 83/83 (100%)

Query:     1 MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRCAACAYPAARKRTYNWSVKAIRRKTTG 60
             MGKGTGSFGKRRNK+HTLCVRCGRRSFH+QKSRC+ACAYPAARKRTYNWSVKAIRRKTTG
Sbjct:     1 MGKGTGSFGKRRNKSHTLCVRCGRRSFHIQKSRCSACAYPAARKRTYNWSVKAIRRKTTG 60

Query:    61 TGRMRYLRHVPRRFKSGFREGTQ 83
             TGRMRYLR+VPRRFK+GFREGT+
Sbjct:    61 TGRMRYLRNVPRRFKTGFREGTE 83

GO:0003735 "structural constituent of ribosome" evidence=IEA;ISS

GO:0005622 "intracellular" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0005840 "ribosome" evidence=IEA;ISS

GO:0006412 "translation" evidence=IEA;ISS

GO:0042254 "ribosome biogenesis" evidence=ISS

GO:0022625 "cytosolic large ribosomal subunit" evidence=IDA

GO:0001510 "RNA methylation" evidence=RCA

TAIR|locus:2037833 AT1G15250 [Arabidopsis thaliana (taxid:3702)]

 Score = 425 (154.7 bits), Expect = 6.8e-40, P = 6.8e-40
 Identities = 77/83 (92%), Positives = 82/83 (98%)

Query:     1 MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRCAACAYPAARKRTYNWSVKAIRRKTTG 60
             MGKGTGSFGKRRNK+HTLCVRCGRRSFH+QKSRC+ACAYPAARKRTYNWSVKAIRRKTTG
Sbjct:     1 MGKGTGSFGKRRNKSHTLCVRCGRRSFHIQKSRCSACAYPAARKRTYNWSVKAIRRKTTG 60

Query:    61 TGRMRYLRHVPRRFKSGFREGTQ 83
             TGRMRYLR+VPRRFK+ FREGTQ
Sbjct:    61 TGRMRYLRNVPRRFKTCFREGTQ 83

GO:0003735 "structural constituent of ribosome" evidence=IEA;ISS

GO:0005622 "intracellular" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0005840 "ribosome" evidence=IEA;ISS

GO:0006412 "translation" evidence=IEA;ISS

GO:0042254 "ribosome biogenesis" evidence=ISS

GO:0022625 "cytosolic large ribosomal subunit" evidence=IDA

TAIR|locus:2018184 AT1G52300 [Arabidopsis thaliana (taxid:3702)]

 Score = 423 (154.0 bits), Expect = 1.1e-39, P = 1.1e-39
 Identities = 76/83 (91%), Positives = 82/83 (98%)

Query:     1 MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRCAACAYPAARKRTYNWSVKAIRRKTTG 60
             M KGTGSFGKRRNK+HTLCVRCGRRSFH+QKSRC+ACAYPAARKRTYNWSVKAIRRKTTG
Sbjct:     1 MTKGTGSFGKRRNKSHTLCVRCGRRSFHIQKSRCSACAYPAARKRTYNWSVKAIRRKTTG 60

Query:    61 TGRMRYLRHVPRRFKSGFREGTQ 83
             TGRMRYLR+VPRRFK+GFREGT+
Sbjct:    61 TGRMRYLRNVPRRFKTGFREGTE 83

GO:0003735 "structural constituent of ribosome" evidence=IEA;ISS

GO:0005622 "intracellular" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0005840 "ribosome" evidence=IEA;ISS

GO:0006412 "translation" evidence=IEA;ISS

GO:0042254 "ribosome biogenesis" evidence=ISS

GO:0022626 "cytosolic ribosome" evidence=IDA

GO:0001510 "RNA methylation" evidence=RCA

FB|FBgn0030616 RpL37a "Ribosomal protein L37a" [Drosophila melanogaster (taxid:7227)]

 Score = 342 (125.4 bits), Expect = 4.2e-31, P = 4.2e-31
 Identities = 62/83 (74%), Positives = 71/83 (85%)

Query:     1 MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRCAACAYPAARKRTYNWSVKAIRRKTTG 60
             M KGT SFGKR NKTHTLC RCGR S+H+QKS CA C YPAA+ R+YNWSVKA RRKTTG
Sbjct:     1 MTKGTSSFGKRHNKTHTLCRRCGRSSYHIQKSTCAQCGYPAAKLRSYNWSVKAKRRKTTG 60

Query:    61 TGRMRYLRHVPRRFKSGFREGTQ 83
             TGRM++L+ V RRF++GFREGTQ
Sbjct:    61 TGRMQHLKVVRRRFRNGFREGTQ 83

GO:0006412 "translation" evidence=ISS

GO:0003735 "structural constituent of ribosome" evidence=ISS;NAS

GO:0022625 "cytosolic large ribosomal subunit" evidence=ISS

GO:0005840 "ribosome" evidence=NAS

SGD|S000004175 RPL37A "Ribosomal 60S subunit protein L37A" [Saccharomyces cerevisiae (taxid:4932)]

 Score = 339 (124.4 bits), Expect = 8.8e-31, P = 8.8e-31
 Identities = 59/82 (71%), Positives = 69/82 (84%)

Query:     1 MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRCAACAYPAARKRTYNWSVKAIRRKTTG 60
             MGKGT SFGKR NK+HTLC RCGRRSFH+QK  C++C YPAA+ R+YNW  KA RR TTG
Sbjct:     1 MGKGTPSFGKRHNKSHTLCNRCGRRSFHVQKKTCSSCGYPAAKTRSYNWGAKAKRRHTTG 60

Query:    61 TGRMRYLRHVPRRFKSGFREGT 82
             TGRMRYL+HV RRFK+GF+ G+
Sbjct:    61 TGRMRYLKHVSRRFKNGFQTGS 82

GO:0005737 "cytoplasm" evidence=IEA

GO:0019843 "rRNA binding" evidence=IEA

GO:0003735 "structural constituent of ribosome" evidence=IEA;TAS

GO:0005622 "intracellular" evidence=IEA

GO:0005840 "ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0030529 "ribonucleoprotein complex" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:0003723 "RNA binding" evidence=IEA

GO:0022625 "cytosolic large ribosomal subunit" evidence=TAS

GO:0002181 "cytoplasmic translation" evidence=TAS

UNIPROTKB|E1C810 RPL37 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 333 (122.3 bits), Expect = 3.8e-30, P = 3.8e-30
 Identities = 60/82 (73%), Positives = 67/82 (81%)

Query:     1 MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRCAACAYPAARKRTYNWSVKAIRRKTTG 60
             M KGT SFGKRRNKTHTLC RCG +++HLQKS C  C YPA RKR YNWS KA RR TTG
Sbjct:     1 MTKGTSSFGKRRNKTHTLCRRCGSKAYHLQKSTCGKCGYPAKRKRKYNWSAKAKRRNTTG 60

Query:    61 TGRMRYLRHVPRRFKSGFREGT 82
             TGRMR+L+ V RRF++GFREGT
Sbjct:    61 TGRMRHLKKVYRRFRNGFREGT 82

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0019843 "rRNA binding" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:0022625 "cytosolic large ribosomal subunit" evidence=IEA

SGD|S000002908 RPL37B "Ribosomal 60S subunit protein L37B" [Saccharomyces cerevisiae (taxid:4932)]

 Score = 332 (121.9 bits), Expect = 4.9e-30, P = 4.9e-30
 Identities = 57/82 (69%), Positives = 70/82 (85%)

Query:     1 MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRCAACAYPAARKRTYNWSVKAIRRKTTG 60
             MGKGT SFGKR NK+HTLC RCGRRSFH+QK  C++C YP+A+ R++NW+ KA RR TTG
Sbjct:     1 MGKGTPSFGKRHNKSHTLCNRCGRRSFHVQKKTCSSCGYPSAKTRSHNWAAKAKRRHTTG 60

Query:    61 TGRMRYLRHVPRRFKSGFREGT 82
             TGRMRYL+HV RRFK+GF+ G+
Sbjct:    61 TGRMRYLKHVSRRFKNGFQTGS 82

GO:0005737 "cytoplasm" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0005840 "ribosome" evidence=IEA

GO:0030529 "ribonucleoprotein complex" evidence=IEA

GO:0003723 "RNA binding" evidence=IEA

GO:0003735 "structural constituent of ribosome" evidence=IEA;TAS

GO:0022625 "cytosolic large ribosomal subunit" evidence=TAS

GO:0002181 "cytoplasmic translation" evidence=TAS

GO:0019843 "rRNA binding" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

UNIPROTKB|P79244 RPL37 "60S ribosomal protein L37" [Bos taurus (taxid:9913)]

 Score = 329 (120.9 bits), Expect = 1.0e-29, P = 1.0e-29
 Identities = 60/82 (73%), Positives = 66/82 (80%)

Query:     1 MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRCAACAYPAARKRTYNWSVKAIRRKTTG 60
             M KGT SFGKRRNKTHTLC RCG +++HLQKS C  C YPA RKR YNWS KA RR TTG
Sbjct:     1 MTKGTSSFGKRRNKTHTLCRRCGSKAYHLQKSTCGKCGYPAKRKRKYNWSAKAKRRNTTG 60

Query:    61 TGRMRYLRHVPRRFKSGFREGT 82
             TGRMR+L+ V RRF+ GFREGT
Sbjct:    61 TGRMRHLKIVYRRFRHGFREGT 82

GO:0022625 "cytosolic large ribosomal subunit" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:0019843 "rRNA binding" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0003735 "structural constituent of ribosome" evidence=IEA

UNIPROTKB|E2RR77 LOC612507 "Ribosomal protein L37" [Canis lupus familiaris (taxid:9615)]

 Score = 329 (120.9 bits), Expect = 1.0e-29, P = 1.0e-29
 Identities = 60/82 (73%), Positives = 66/82 (80%)

Query:     1 MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRCAACAYPAARKRTYNWSVKAIRRKTTG 60
             M KGT SFGKRRNKTHTLC RCG +++HLQKS C  C YPA RKR YNWS KA RR TTG
Sbjct:     1 MTKGTSSFGKRRNKTHTLCRRCGSKAYHLQKSTCGKCGYPAKRKRKYNWSAKAKRRNTTG 60

Query:    61 TGRMRYLRHVPRRFKSGFREGT 82
             TGRMR+L+ V RRF+ GFREGT
Sbjct:    61 TGRMRHLKIVYRRFRHGFREGT 82

GO:0046872 "metal ion binding" evidence=IEA

GO:0019843 "rRNA binding" evidence=IEA

GO:0005840 "ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0003735 "structural constituent of ribosome" evidence=IEA

UNIPROTKB|P61927 RPL37 "60S ribosomal protein L37" [Homo sapiens (taxid:9606)]

 Score = 329 (120.9 bits), Expect = 1.0e-29, P = 1.0e-29
 Identities = 60/82 (73%), Positives = 66/82 (80%)

Query:     1 MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRCAACAYPAARKRTYNWSVKAIRRKTTG 60
             M KGT SFGKRRNKTHTLC RCG +++HLQKS C  C YPA RKR YNWS KA RR TTG
Sbjct:     1 MTKGTSSFGKRRNKTHTLCRRCGSKAYHLQKSTCGKCGYPAKRKRKYNWSAKAKRRNTTG 60

Query:    61 TGRMRYLRHVPRRFKSGFREGT 82
             TGRMR+L+ V RRF+ GFREGT
Sbjct:    61 TGRMRHLKIVYRRFRHGFREGT 82

GO:0019843 "rRNA binding" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:0003723 "RNA binding" evidence=TAS

GO:0003735 "structural constituent of ribosome" evidence=NAS;TAS

GO:0022625 "cytosolic large ribosomal subunit" evidence=IDA;TAS

GO:0006412 "translation" evidence=NAS;TAS

GO:0000184 "nuclear-transcribed mRNA catabolic process, nonsense-mediated decay" evidence=TAS

GO:0005829 "cytosol" evidence=TAS

GO:0006413 "translational initiation" evidence=TAS

GO:0006414 "translational elongation" evidence=TAS

GO:0006415 "translational termination" evidence=TAS

GO:0006614 "SRP-dependent cotranslational protein targeting to membrane" evidence=TAS

GO:0010467 "gene expression" evidence=TAS

GO:0016032 "viral reproduction" evidence=TAS

GO:0016070 "RNA metabolic process" evidence=TAS

GO:0016071 "mRNA metabolic process" evidence=TAS

GO:0019058 "viral infectious cycle" evidence=TAS

GO:0019083 "viral transcription" evidence=TAS

GO:0044267 "cellular protein metabolic process" evidence=TAS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P49166	RL37A_YEAST	No assigned EC number	0.7195	0.8631	0.9318	yes	no
Q9D823	RL37_MOUSE	No assigned EC number	0.6931	0.9263	0.9072	yes	no
P0DJ24	RL37_TETTS	No assigned EC number	0.5869	0.9578	0.9680	N/A	no
Q6BPF6	RL37_DEBHA	No assigned EC number	0.6585	0.8631	0.9318	yes	no
Q54MG6	RL37_DICDI	No assigned EC number	0.6206	0.9157	0.9560	yes	no
Q8LEM8	RL373_ARATH	No assigned EC number	0.8842	1.0	1.0	yes	no
P59289	RL37A_SCHPO	No assigned EC number	0.6790	0.8526	0.9101	yes	no
Q90YT1	RL37_ICTPU	No assigned EC number	0.6931	0.9263	0.9072	N/A	no
O44125	RL37_SCHMA	No assigned EC number	0.6666	0.8526	0.9204	N/A	no
Q9VXX8	RL371_DROME	No assigned EC number	0.7173	0.9684	0.9892	yes	no
Q9P836	RL37_CANAX	No assigned EC number	0.6506	0.8736	0.9431	N/A	no
Q8LFH7	RL371_ARATH	No assigned EC number	0.8842	1.0	1.0	no	no
Q962S7	RL37_SPOFR	No assigned EC number	0.6842	0.9684	1.0	N/A	no
P49212	RL37_SOLLC	No assigned EC number	0.8253	0.6631	0.9843	N/A	no
Q43292	RL372_ARATH	No assigned EC number	0.8842	1.0	1.0	yes	no
P62886	RL37_LEIIN	No assigned EC number	0.6202	0.8315	0.9518	yes	no
P62885	RL37_LEIDO	No assigned EC number	0.6202	0.8315	0.9518	N/A	no
P49622	RL37_CAEEL	No assigned EC number	0.6321	0.9052	0.9450	yes	no
P79244	RL37_BOVIN	No assigned EC number	0.6931	0.9263	0.9072	yes	no
P61927	RL37_HUMAN	No assigned EC number	0.6931	0.9263	0.9072	yes	no
P61928	RL37_RAT	No assigned EC number	0.6931	0.9263	0.9072	yes	no
Q9C0T1	RL37_EMENI	No assigned EC number	0.6896	0.9157	0.9456	yes	no
Q8SRH5	RL37_ENCCU	No assigned EC number	0.4810	0.8210	0.8666	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	estExt_Genewise1_v1.C_LG_I0199	RecName- Full=Ribosomal protein L37;; Binds to the 23S rRNA (By similarity) (96 aa)
		(Populus trichocarpa)
Predicted Functional Partners:
	estExt_fgenesh4_pm.C_LG_VIII0253	RecName- Full=60S acidic ribosomal protein P0; (323 aa)			•	•	•	•	•		0.702
	estExt_fgenesh4_pg.C_LG_X1707	RecName- Full=60S acidic ribosomal protein P0; (321 aa)			•	•	•	•	•		0.701
	gw1.XVI.1998.1	SubName- Full=Putative uncharacterized protein; (204 aa)				•		•	•		0.655
	eugene3.00061162	SubName- Full=Putative uncharacterized protein; (208 aa)				•		•	•		0.634
	estExt_fgenesh4_pm.C_400015	hypothetical protein (204 aa)				•			•		0.622
	estExt_fgenesh4_kg.C_410006	RecName- Full=Ribosomal protein L15; (204 aa)				•			•		0.621
	grail3.0096009401	RecName- Full=Ribosomal protein L15; (205 aa)				•			•		0.621
	estExt_fgenesh4_kg.C_LG_XVII0009	SubName- Full=Putative uncharacterized protein; (144 aa)				•		•	•		0.607
	eugene3.00041113	hypothetical protein (144 aa)				•		•	•		0.597
	fgenesh4_pm.C_LG_III000548	RecName- Full=Ribosomal protein S27; (86 aa)			•	•		•	•		0.595

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	95
PTZ00073	91	PTZ00073, PTZ00073, 60S ribosomal protein L37; Pro	2e-36
pfam01907	54	pfam01907, Ribosomal_L37e, Ribosomal protein L37e	2e-22
COG2126	61	COG2126, RPL37A, Ribosomal protein L37E [Translati	4e-15
PRK04179	62	PRK04179, rpl37e, 50S ribosomal protein L37e; Revi	9e-11

>gnl|CDD|240257 PTZ00073, PTZ00073, 60S ribosomal protein L37; Provisional

 Score =  117 bits (296), Expect = 2e-36
 Identities = 65/91 (71%), Positives = 75/91 (82%)

Query: 1  MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRCAACAYPAARKRTYNWSVKAIRRKTTG 60
          M KGTGSFGKR  KTHTLC RCG+RSFH+QK RCA+C YP+A+ R YNWSVKA RR+TTG
Sbjct: 1  MTKGTGSFGKRHGKTHTLCRRCGKRSFHVQKKRCASCGYPSAKMRRYNWSVKAKRRRTTG 60

Query: 61 TGRMRYLRHVPRRFKSGFREGTQAAPRKKGA 91
          TGR RYL+ V RR K+GFREGT+A P+ K A
Sbjct: 61 TGRCRYLKTVARRAKNGFREGTKAKPKVKAA 91

Length = 91

>gnl|CDD|145202 pfam01907, Ribosomal_L37e, Ribosomal protein L37e

 Score = 81.5 bits (202), Expect = 2e-22
 Identities = 37/54 (68%), Positives = 43/54 (79%)

Query: 2  GKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRCAACAYPAARKRTYNWSVKAIR 55
           KGT SFGKR  KTHTLC RCGRRS+H+QK RCA+C +P A++R YNWS KA R
Sbjct: 1  TKGTPSFGKRNKKTHTLCRRCGRRSYHVQKKRCASCGFPRAKRRRYNWSKKAKR 54

This family includes ribosomal protein L37 from eukaryotes and archaebacteria. The family contains many conserved cysteines and histidines suggesting that this protein may bind to zinc. Length = 54

>gnl|CDD|225037 COG2126, RPL37A, Ribosomal protein L37E [Translation, ribosomal structure and biogenesis]

 Score = 63.2 bits (154), Expect = 4e-15
 Identities = 35/61 (57%), Positives = 42/61 (68%), Gaps = 1/61 (1%)

Query: 1  MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRCAACAYPAARK-RTYNWSVKAIRRKTT 59
          M KGT SFGKR  KTH  C RCGRRS+H++K  CAAC +  + + R+YNW  K  RRKT 
Sbjct: 1  MSKGTPSFGKRNKKTHIRCRRCGRRSYHVRKKYCAACGFGRSARMRSYNWQAKKKRRKTI 60

Query: 60 G 60
          G
Sbjct: 61 G 61

Length = 61

>gnl|CDD|235242 PRK04179, rpl37e, 50S ribosomal protein L37e; Reviewed

 Score = 52.3 bits (126), Expect = 9e-11
 Identities = 28/59 (47%), Positives = 37/59 (62%), Gaps = 2/59 (3%)

Query: 1  MGKGTGSFGKR-RNKTHTLCVRCGRRSFHLQKSRCAACAY-PAARKRTYNWSVKAIRRK 57
          M KGT S GKR + KTH  C RCGR S++++K  CAAC +  + R R Y+W  K +  K
Sbjct: 1  MSKGTPSMGKRNKGKTHIRCRRCGRHSYNVRKKYCAACGFGRSKRIRRYSWQNKKVNGK 59

Length = 62

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	95
KOG3475	92	consensus 60S ribosomal protein L37 [Translation,	100.0
PTZ00073	91	60S ribosomal protein L37; Provisional	100.0
PRK04179	62	rpl37e 50S ribosomal protein L37e; Reviewed	100.0
PF01907	55	Ribosomal_L37e: Ribosomal protein L37e; InterPro:	100.0
COG2126	61	RPL37A Ribosomal protein L37E [Translation, riboso	100.0
COG1998	51	RPS31 Ribosomal protein S27AE [Translation, riboso	93.52
PF14599	61	zinc_ribbon_6: Zinc-ribbon; PDB: 2K2D_A.	90.22
PRK00432	50	30S ribosomal protein S27ae; Validated	89.98
PF01783	56	Ribosomal_L32p: Ribosomal L32p protein family; Int	88.4
PF13248	26	zf-ribbon_3: zinc-ribbon domain	88.32
PF01599	47	Ribosomal_S27: Ribosomal protein S27a; InterPro: I	82.9
smart00661	52	RPOL9 RNA polymerase subunit 9.	82.18
TIGR01031	55	rpmF_bact ribosomal protein L32. This protein desc	81.46
COG0675	364	Transposase and inactivated derivatives [DNA repli	80.63

>KOG3475 consensus 60S ribosomal protein L37 [Translation, ribosomal structure and biogenesis]

Probab=100.00  E-value=1.8e-59  Score=322.65  Aligned_cols=92  Identities=71%  Similarity=1.242  Sum_probs=89.7

Q ss_pred             CCCCCCCCCCCCCCcccccccCCCccccccccccccccCcccccccCCccccccccccccccccccccccchhcccCcCc
Q 034400            1 MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRCAACAYPAARKRTYNWSVKAIRRKTTGTGRMRYLRHVPRRFKSGFRE   80 (95)
Q Consensus         1 MtKGT~SfGKr~~ktH~lCrRCG~~syH~qKk~Ca~CGyps~k~R~YnWs~Ka~rr~ttGTGRmr~lk~v~rrfkngFre   80 (95)
                      |+|||+||||+|+|+|+||+|||++|||+||++|++||||++++|+||||+||+||+|||||||||||+|+|||+|||||
T Consensus         1 MtKGT~sFGKr~nkshtlC~RCG~~syH~QKstC~~CGYpaak~R~ynws~KAkRR~TtGTGrMr~lk~v~rrfrnGfre   80 (92)
T KOG3475|consen    1 MTKGTSSFGKRHNKSHTLCRRCGRRSYHIQKSTCSSCGYPAAKKRSYNWSAKAKRRRTTGTGRMRYLKIVYRRFRNGFRE   80 (92)
T ss_pred             CCCcccchhhccccchHHHHHhCchhhhhhcccccccCCcchhccCCCcchhhhhccccccchhHHHHHHHHHHhccccc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCccccccc
Q 034400           81 GTQAAPRKKGAA   92 (95)
Q Consensus        81 Gt~~~~~~~~~~   92 (95)
                      |++|+|+.++++
T Consensus        81 gt~~k~k~a~~~   92 (92)
T KOG3475|consen   81 GTTAKPKAAAAA   92 (92)
T ss_pred             CCccCccccccC
Confidence            999999977653

>PTZ00073 60S ribosomal protein L37; Provisional

Probab=100.00  E-value=1.5e-58  Score=318.35  Aligned_cols=90  Identities=71%  Similarity=1.243  Sum_probs=88.4

Q ss_pred             CCCCCCCCCCCCCCcccccccCCCccccccccccccccCcccccccCCccccccccccccccccccccccchhcccCcCc
Q 034400            1 MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRCAACAYPAARKRTYNWSVKAIRRKTTGTGRMRYLRHVPRRFKSGFRE   80 (95)
Q Consensus         1 MtKGT~SfGKr~~ktH~lCrRCG~~syH~qKk~Ca~CGyps~k~R~YnWs~Ka~rr~ttGTGRmr~lk~v~rrfkngFre   80 (95)
                      |+|||+||||||++|||||+|||++|||+||++||+||||++++|+|||+.||++|+|||||||||||+|+|||+|||||
T Consensus         1 MtKGT~SfGKr~~ktHtlCrRCG~~syH~qK~~CasCGypsak~R~YnWs~Ka~rr~ttGtGrmr~lk~v~rrf~ngfre   80 (91)
T PTZ00073          1 MTKGTGSFGKRHGKTHTLCRRCGKRSFHVQKKRCASCGYPSAKMRRYNWSVKAKRRRTTGTGRCRYLKTVARRAKNGFRE   80 (91)
T ss_pred             CCCCCcccccccCcCcchhcccCccccccccccchhcCCchhhccccchhhhhccccCCccchhHHHHHHHHHHhcCccc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCccccc
Q 034400           81 GTQAAPRKKG   90 (95)
Q Consensus        81 Gt~~~~~~~~   90 (95)
                      ||+|+|++++
T Consensus        81 gt~~~~~~~~   90 (91)
T PTZ00073         81 GTKAKPKVKA   90 (91)
T ss_pred             CCccccccCC
Confidence            9999998765

>PRK04179 rpl37e 50S ribosomal protein L37e; Reviewed

Probab=100.00  E-value=1.9e-36  Score=196.73  Aligned_cols=57  Identities=47%  Similarity=0.934  Sum_probs=54.7

Q ss_pred             CCCCCCCCCCCCCC-cccccccCCCccccccccccccccC-cccccccCCccccccccc
Q 034400            1 MGKGTGSFGKRRNK-THTLCVRCGRRSFHLQKSRCAACAY-PAARKRTYNWSVKAIRRK   57 (95)
Q Consensus         1 MtKGT~SfGKr~~k-tH~lCrRCG~~syH~qKk~Ca~CGy-ps~k~R~YnWs~Ka~rr~   57 (95)
                      |+|||+||||||++ |||+|||||++|||+||++||+||| |++++|+|||+.||+.+.
T Consensus         1 MtKGT~SfGKr~~k~tHt~CrRCG~~syh~qK~~CasCGygps~k~R~YnWs~Ka~~~~   59 (62)
T PRK04179          1 MSKGTPSMGKRNKGKTHIRCRRCGRHSYNVRKKYCAACGFGRSKRIRRYSWQNKKVNGK   59 (62)
T ss_pred             CCCCCcccccccCCcccchhcccCcccccccccchhhcCCCcccccccccHHHHhhccc
Confidence            99999999999997 9999999999999999999999999 999999999999997654

>PF01907 Ribosomal_L37e: Ribosomal protein L37e; InterPro: IPR001569 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms

Probab=100.00  E-value=2.1e-36  Score=192.66  Aligned_cols=54  Identities=74%  Similarity=1.329  Sum_probs=46.0

Q ss_pred             CCCCCCCCCCCCCcccccccCCCccccccccccccccCcccccc-cCCccccccc
Q 034400            2 GKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRCAACAYPAARKR-TYNWSVKAIR   55 (95)
Q Consensus         2 tKGT~SfGKr~~ktH~lCrRCG~~syH~qKk~Ca~CGyps~k~R-~YnWs~Ka~r   55 (95)
                      |||||||||||++|||||+|||++|||+||++||+||||++++| +|||+.||+|
T Consensus         1 tKGT~S~Gkr~~ktH~~CrRCG~~syH~qK~~CasCGyp~~kkrr~ynWs~Ka~r   55 (55)
T PF01907_consen    1 TKGTSSFGKRHNKTHTLCRRCGRRSYHIQKKTCASCGYPAAKKRRKYNWSAKAKR   55 (55)
T ss_dssp             -TTHHHHTTS-S-SEEE-TTTSSEEEETTTTEETTTBTTTSSS----SSSSHHHH
T ss_pred             CCCCCCccccCCccEeeecccCCeeeecCCCcccccCCCcccccccccchhhhcC
Confidence            69999999999999999999999999999999999999999999 9999999975

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. A number of eukaryotic and archaeal ribosomal proteins can be grouped on the basis of sequence similarities. One of these families consists of proteins of 56 to 96 amino-acid residues that share a highly conserved region located in the N-terminal part.; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 4A19_A 4A1D_A 4A18_A 4A1B_A 1S1I_Y 3O5H_d 3IZS_l 3O58_d 2ZKR_2 3IZR_l ....

>COG2126 RPL37A Ribosomal protein L37E [Translation, ribosomal structure and biogenesis]

Probab=100.00  E-value=3.4e-35  Score=190.35  Aligned_cols=60  Identities=62%  Similarity=1.119  Sum_probs=58.3

Q ss_pred             CCCCCCCCCCCCCCcccccccCCCccccccccccccccCc-ccccccCCcccccccccccc
Q 034400            1 MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRCAACAYP-AARKRTYNWSVKAIRRKTTG   60 (95)
Q Consensus         1 MtKGT~SfGKr~~ktH~lCrRCG~~syH~qKk~Ca~CGyp-s~k~R~YnWs~Ka~rr~ttG   60 (95)
                      |+||||||||+|+++||+|||||++|||+||++|++|||| ++++|+|+|+.|+++++++|
T Consensus         1 MskGT~S~GKrnk~tH~~CRRCGr~syhv~k~~CaaCGfgrs~r~R~y~W~~K~~~r~~~~   61 (61)
T COG2126           1 MSKGTPSFGKRNKKTHIRCRRCGRRSYHVRKKYCAACGFGRSARMRSYNWQAKKKRRKTIG   61 (61)
T ss_pred             CCCCCccccccCCcceehhhhccchheeeccceecccCCCCccccccchhhhhhhcCeecC
Confidence            9999999999999999999999999999999999999998 99999999999999998865

>COG1998 RPS31 Ribosomal protein S27AE [Translation, ribosomal structure and biogenesis]

Probab=93.52  E-value=0.03  Score=35.62  Aligned_cols=26  Identities=31%  Similarity=0.829  Sum_probs=21.9

Q ss_pred             cccccccCCC---ccccccccccccccCc
Q 034400           15 THTLCVRCGR---RSFHLQKSRCAACAYP   40 (95)
Q Consensus        15 tH~lCrRCG~---~syH~qKk~Ca~CGyp   40 (95)
                      -.-.|.|||-   -+.|.....|+.|||-
T Consensus        18 k~~~CPrCG~gvfmA~H~dR~~CGkCgyT   46 (51)
T COG1998          18 KNRFCPRCGPGVFMADHKDRWACGKCGYT   46 (51)
T ss_pred             ccccCCCCCCcchhhhcCceeEeccccce
Confidence            4568999996   4669999999999995

>PF14599 zinc_ribbon_6: Zinc-ribbon; PDB: 2K2D_A

Probab=90.22  E-value=0.099  Score=33.69  Aligned_cols=27  Identities=33%  Similarity=0.872  Sum_probs=15.6

Q ss_pred             CCCcccccccCCCcc---cccccccccccc
Q 034400           12 RNKTHTLCVRCGRRS---FHLQKSRCAACA   38 (95)
Q Consensus        12 ~~ktH~lCrRCG~~s---yH~qKk~Ca~CG   38 (95)
                      +.+..|+|.-|+.+|   ||+--..|..||
T Consensus        26 ~~~v~IlCNDC~~~s~v~fH~lg~KC~~C~   55 (61)
T PF14599_consen   26 NKKVWILCNDCNAKSEVPFHFLGHKCSHCG   55 (61)
T ss_dssp             --EEEEEESSS--EEEEE--TT----TTTS
T ss_pred             CCEEEEECCCCCCccceeeeHhhhcCCCCC
Confidence            346899999999876   999999999999

>PRK00432 30S ribosomal protein S27ae; Validated

Probab=89.98  E-value=0.17  Score=31.13  Aligned_cols=26  Identities=35%  Similarity=0.943  Sum_probs=20.9

Q ss_pred             cccccccCCC--ccccccccccccccCc
Q 034400           15 THTLCVRCGR--RSFHLQKSRCAACAYP   40 (95)
Q Consensus        15 tH~lCrRCG~--~syH~qKk~Ca~CGyp   40 (95)
                      +...|++||.  -+-|.....|++|||.
T Consensus        19 ~~~fCP~Cg~~~m~~~~~r~~C~~Cgyt   46 (50)
T PRK00432         19 KNKFCPRCGSGFMAEHLDRWHCGKCGYT   46 (50)
T ss_pred             ccCcCcCCCcchheccCCcEECCCcCCE
Confidence            5668999998  4456668899999984

>PF01783 Ribosomal_L32p: Ribosomal L32p protein family; InterPro: IPR002677 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms

Probab=88.40  E-value=0.28  Score=30.45  Aligned_cols=24  Identities=29%  Similarity=0.776  Sum_probs=21.1

Q ss_pred             CcccccccCCCccccccccccccccC
Q 034400           14 KTHTLCVRCGRRSFHLQKSRCAACAY   39 (95)
Q Consensus        14 ktH~lCrRCG~~syH~qKk~Ca~CGy   39 (95)
                      ..-+.|.-||  .+++.+..|.+|||
T Consensus        24 ~~l~~c~~cg--~~~~~H~vc~~cG~   47 (56)
T PF01783_consen   24 PNLVKCPNCG--EPKLPHRVCPSCGY   47 (56)
T ss_dssp             TSEEESSSSS--SEESTTSBCTTTBB
T ss_pred             cceeeeccCC--CEecccEeeCCCCe
Confidence            3557899999  79999999999997

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Ribosomal protein L32p is part of the 50S ribosomal subunit. This family is found in both prokaryotes and eukaryotes. Ribosomal protein L32 of yeast binds to and regulates the splicing and the translation of the transcript of its own gene [].; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0015934 large ribosomal subunit; PDB: 3PYT_2 3F1F_5 3PYV_2 3D5B_5 3MRZ_2 3D5D_5 3F1H_5 1VSP_Y 3PYR_2 3MS1_2 ....

>PF13248 zf-ribbon_3: zinc-ribbon domain

Probab=88.32  E-value=0.26  Score=26.31  Aligned_cols=23  Identities=22%  Similarity=0.671  Sum_probs=19.1

Q ss_pred             cccccCCCccccccccccccccCc
Q 034400           17 TLCVRCGRRSFHLQKSRCAACAYP   40 (95)
Q Consensus        17 ~lCrRCG~~syH~qKk~Ca~CGyp   40 (95)
                      +.|..||. .-...-..|..||.+
T Consensus         3 ~~Cp~Cg~-~~~~~~~fC~~CG~~   25 (26)
T PF13248_consen    3 MFCPNCGA-EIDPDAKFCPNCGAK   25 (26)
T ss_pred             CCCcccCC-cCCcccccChhhCCC
Confidence            57999999 677888999999964

>PF01599 Ribosomal_S27: Ribosomal protein S27a; InterPro: IPR002906 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms

Probab=82.90  E-value=0.6  Score=28.95  Aligned_cols=26  Identities=31%  Similarity=0.815  Sum_probs=20.6

Q ss_pred             Ccccccc--cCCC---ccccccccccccccC
Q 034400           14 KTHTLCV--RCGR---RSFHLQKSRCAACAY   39 (95)
Q Consensus        14 ktH~lCr--RCG~---~syH~qKk~Ca~CGy   39 (95)
                      ..+-.|+  +||.   -+-|.....|++|||
T Consensus        16 r~rk~CP~~~CG~GvFMA~H~dR~~CGKCg~   46 (47)
T PF01599_consen   16 RLRKECPSPRCGAGVFMAEHKDRHYCGKCGY   46 (47)
T ss_dssp             ESSEE-TSTTTTSSSEEEE-SSEEEETTTSS
T ss_pred             EhhhcCCCcccCCceEeeecCCCccCCCccc
Confidence            4677899  9999   477999999999997

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This family of ribosomal proteins consists mainly of the 40S ribosomal protein S27a which is synthesized as a C-terminal extension of ubiquitin (CEP) (IPR000626 from INTERPRO). The S27a domain compromises the C-terminal half of the protein. The synthesis of ribosomal proteins as extensions of ubiquitin promotes their incorporation into nascent ribosomes by a transient metabolic stabilisation and is required for efficient ribosome biogenesis []. The ribosomal extension protein S27a contains a basic region that is proposed to form a zinc finger; its fusion gene is proposed as a mechanism to maintain a fixed ratio between ubiquitin necessary for degrading proteins and ribosomes a source of proteins [].; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 2K4X_A 3U5C_f 3U5G_f 2XZN_9 2XZM_9.

>smart00661 RPOL9 RNA polymerase subunit 9

Probab=82.18  E-value=0.75  Score=26.77  Aligned_cols=23  Identities=26%  Similarity=0.814  Sum_probs=18.9

Q ss_pred             ccccCCCcccccc-----ccccccccCc
Q 034400           18 LCVRCGRRSFHLQ-----KSRCAACAYP   40 (95)
Q Consensus        18 lCrRCG~~syH~q-----Kk~Ca~CGyp   40 (95)
                      .|..||...|...     ...|..|||-
T Consensus         2 FCp~Cg~~l~~~~~~~~~~~vC~~Cg~~   29 (52)
T smart00661        2 FCPKCGNMLIPKEGKEKRRFVCRKCGYE   29 (52)
T ss_pred             CCCCCCCccccccCCCCCEEECCcCCCe
Confidence            5899999998874     4679999994

>TIGR01031 rpmF_bact ribosomal protein L32

Probab=81.46  E-value=0.72  Score=28.85  Aligned_cols=24  Identities=38%  Similarity=1.010  Sum_probs=20.9

Q ss_pred             CcccccccCCCccccccccccccccC
Q 034400           14 KTHTLCVRCGRRSFHLQKSRCAACAY   39 (95)
Q Consensus        14 ktH~lCrRCG~~syH~qKk~Ca~CGy   39 (95)
                      ...+.|..||.  |++....|..|||
T Consensus        24 p~l~~C~~cG~--~~~~H~vc~~cG~   47 (55)
T TIGR01031        24 PTLVVCPNCGE--FKLPHRVCPSCGY   47 (55)
T ss_pred             CcceECCCCCC--cccCeeECCccCe
Confidence            45567999997  8999999999997

This protein describes bacterial ribosomal protein L32. The noise cutoff is set low enough to include the equivalent protein from mitochondria and chloroplasts. No related proteins from the Archaea nor from the eukaryotic cytosol are detected by this model. This model is a fragment model; the putative L32 of some species shows similarity only toward the N-terminus.

>COG0675 Transposase and inactivated derivatives [DNA replication, recombination, and repair]

Probab=80.63  E-value=0.79  Score=33.51  Aligned_cols=25  Identities=24%  Similarity=0.646  Sum_probs=21.1

Q ss_pred             CcccccccCCCccccccccccccccCc
Q 034400           14 KTHTLCVRCGRRSFHLQKSRCAACAYP   40 (95)
Q Consensus        14 ktH~lCrRCG~~syH~qKk~Ca~CGyp   40 (95)
                      -|-..|..||.  .+.+.-.|..||+-
T Consensus       307 ~tS~~C~~cg~--~~~r~~~C~~cg~~  331 (364)
T COG0675         307 YTSKTCPCCGH--LSGRLFKCPRCGFV  331 (364)
T ss_pred             CCcccccccCC--ccceeEECCCCCCe
Confidence            45678999999  77788899999983

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	95
3izr_l	94	Localization Of The Large Subunit Ribosomal Protein		2e-38
3izs_l	88	Localization Of The Large Subunit Ribosomal Protein		4e-30
1s1i_Y	87	Structure Of The Ribosomal 80s-Eef2-Sordarin Comple		2e-29
2zkr_2	97	Structure Of A Mammalian Ribosomal 60s Subunit With		3e-28
4a18_A	94	T.Thermophila 60s Ribosomal Subunit In Complex With		3e-21
3zf7_n	84	High-resolution Cryo-electron Microscopy Structure		6e-18
3jyw_Y	52	Structure Of The 60s Proteins For Eukaryotic Riboso		6e-17
1s72_1	57	Refined Crystal Structure Of The Haloarcula Marismo		3e-07
1ffk_X	56	Crystal Structure Of The Large Ribosomal Subunit Fr		4e-07
3j21_e	62	Promiscuous Behavior Of Proteins In Archaeal Riboso		3e-06

>pdb|3IZR|LL Chain l, Localization Of The Large Subunit Ribosomal Proteins Into A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s Ribosome Length = 94

Iteration: 1
 Score =  154 bits (388), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 74/83 (89%), Positives = 78/83 (93%)
Query: 1  MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRCAACAYPAARKRTYNWSVKAIRRKTTG 60
          MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKS C++C YPAAR R YNWSVKAIRRKTTG
Sbjct: 1  MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSTCSSCGYPAARIRKYNWSVKAIRRKTTG 60
Query: 61 TGRMRYLRHVPRRFKSGFREGTQ 83
          TGRMRY+RHVPRRFKS FREGT+
Sbjct: 61 TGRMRYMRHVPRRFKSNFREGTE 83

>pdb|3IZS|LL Chain l, Localization Of The Large Subunit Ribosomal Proteins Into A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae Translating 80s Ribosome Length = 88

Iteration: 1
 Score =  125 bits (315), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 59/82 (71%), Positives = 69/82 (84%)
Query: 1  MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRCAACAYPAARKRTYNWSVKAIRRKTTG 60
          MGKGT SFGKR NK+HTLC RCGRRSFH+QK  C++C YPAA+ R+YNW  KA RR TTG
Sbjct: 1  MGKGTPSFGKRHNKSHTLCNRCGRRSFHVQKKTCSSCGYPAAKTRSYNWGAKAKRRHTTG 60
Query: 61 TGRMRYLRHVPRRFKSGFREGT 82
          TGRMRYL+HV RRFK+GF+ G+
Sbjct: 61 TGRMRYLKHVSRRFKNGFQTGS 82

>pdb|1S1I|Y Chain Y, Structure Of The Ribosomal 80s-Eef2-Sordarin Complex From Yeast Obtained By Docking Atomic Models For Rna And Protein Components Into A 11.7 A Cryo-Em Map. This File, 1s1i, Contains 60s Subunit. The 40s Ribosomal Subunit Is In File 1s1h Length = 87

Iteration: 1
 Score =  123 bits (309), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 58/81 (71%), Positives = 68/81 (83%)
Query: 2  GKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRCAACAYPAARKRTYNWSVKAIRRKTTGT 61
          GKGT SFGKR NK+HTLC RCGRRSFH+QK  C++C YPAA+ R+YNW  KA RR TTGT
Sbjct: 1  GKGTPSFGKRHNKSHTLCNRCGRRSFHVQKKTCSSCGYPAAKTRSYNWGAKAKRRHTTGT 60
Query: 62 GRMRYLRHVPRRFKSGFREGT 82
          GRMRYL+HV RRFK+GF+ G+
Sbjct: 61 GRMRYLKHVSRRFKNGFQTGS 81

>pdb|2ZKR|2 Chain 2, Structure Of A Mammalian Ribosomal 60s Subunit Within An 80s Complex Obtained By Docking Homology Models Of The Rna And Proteins Into An 8.7 A Cryo-Em Map Length = 97

Iteration: 1
 Score =  119 bits (299), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 60/82 (73%), Positives = 66/82 (80%)
Query: 1  MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRCAACAYPAARKRTYNWSVKAIRRKTTG 60
          M KGT SFGKRRNKTHTLC RCG +++HLQKS C  C YPA RKR YNWS KA RR TTG
Sbjct: 1  MTKGTSSFGKRRNKTHTLCRRCGSKAYHLQKSTCGKCGYPAKRKRKYNWSAKAKRRNTTG 60
Query: 61 TGRMRYLRHVPRRFKSGFREGT 82
          TGRMR+L+ V RRF+ GFREGT
Sbjct: 61 TGRMRHLKIVYRRFRHGFREGT 82

>pdb|4A18|A Chain A, T.Thermophila 60s Ribosomal Subunit In Complex With Initiation Factor 6. This File Contains 26s Rrna And Proteins Of Molecule 1 Length = 94

Iteration: 1
 Score = 96.7 bits (239), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 49/84 (58%), Positives = 60/84 (71%), Gaps = 1/84 (1%)
Query: 1  MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRCAACAYPAARKRTYN-WSVKAIRRKTT 59
          M +GT +FGKR  KTHTLC RCG+ ++H QK RCAAC YP A+ R Y+ W  K   RK  
Sbjct: 1  MTRGTPAFGKRHQKTHTLCRRCGKATYHKQKLRCAACGYPDAKMRRYDGWGQKVRDRKGQ 60
Query: 60 GTGRMRYLRHVPRRFKSGFREGTQ 83
          GTGRMRY++ + RR K+GFR GTQ
Sbjct: 61 GTGRMRYMKTIARRAKNGFRSGTQ 84

>pdb|3ZF7|NN Chain n, High-resolution Cryo-electron Microscopy Structure Of The Trypanosoma Brucei Ribosome Length = 84

Iteration: 1
 Score = 85.9 bits (211), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 48/83 (57%), Positives = 62/83 (74%)
Query: 1  MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRCAACAYPAARKRTYNWSVKAIRRKTTG 60
          M KGT S G+R  +TH LC RCGR ++H+Q  RCAACAYP A++R YNWSVKAI+R+ TG
Sbjct: 1  MTKGTTSMGQRHGRTHILCRRCGRNAYHVQWERCAACAYPRAQRRRYNWSVKAIKRRRTG 60
Query: 61 TGRMRYLRHVPRRFKSGFREGTQ 83
          TGR RYL+ V RR ++ F+   +
Sbjct: 61 TGRCRYLKVVHRRIRNHFKTDIK 83

>pdb|3JYW|Y Chain Y, Structure Of The 60s Proteins For Eukaryotic Ribosome Based On Cryo-Em Map Of Thermomyces Lanuginosus Ribosome At 8.9a Resolution Length = 52

Iteration: 1
 Score = 82.4 bits (202), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 37/52 (71%), Positives = 43/52 (82%)
Query: 2  GKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRCAACAYPAARKRTYNWSVKA 53
          GKGT SFGKR NK+HTLC RCGRRSFH+QK  C++C YPAA+ R+YNW  KA
Sbjct: 1  GKGTPSFGKRHNKSHTLCNRCGRRSFHVQKKTCSSCGYPAAKTRSYNWGAKA 52

>pdb|1S72|1 Chain 1, Refined Crystal Structure Of The Haloarcula Marismortui Large Ribosomal Subunit At 2.4 Angstrom Resolution Length = 57

Iteration: 1
 Score = 50.1 bits (118), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 24/53 (45%), Positives = 34/53 (64%), Gaps = 1/53 (1%)
Query: 2  GKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRCAACAY-PAARKRTYNWSVKA 53
          G GT S GK+   THT C RCG +S+H +K  C++C +  +A++R Y W  KA
Sbjct: 3  GAGTPSQGKKNTTTHTKCRRCGEKSYHTKKKVCSSCGFGKSAKRRDYEWQSKA 55

>pdb|1FFK|X Chain X, Crystal Structure Of The Large Ribosomal Subunit From Haloarcula Marismortui At 2.4 Angstrom Resolution Length = 56

Iteration: 1
 Score = 49.7 bits (117), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 24/54 (44%), Positives = 34/54 (62%), Gaps = 1/54 (1%)
Query: 1  MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRCAACAY-PAARKRTYNWSVKA 53
           G GT S GK+   THT C RCG +S+H +K  C++C +  +A++R Y W  KA
Sbjct: 1  TGAGTPSQGKKNTTTHTKCRRCGEKSYHTKKKVCSSCGFGKSAKRRDYEWQSKA 54

>pdb|3J21|EE Chain e, Promiscuous Behavior Of Proteins In Archaeal Ribosomes Revealed By Cryo-em: Implications For Evolution Of Eukaryotic Ribosomes (50s Ribosomal Proteins) Length = 62

Iteration: 1
 Score = 46.6 bits (109), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 26/52 (50%), Positives = 35/52 (67%), Gaps = 2/52 (3%)
Query: 1  MGKGTGSFGKRRN-KTHTLCVRCGRRSFHLQKSRCAACAYPAARK-RTYNWS 50
          MG GT +FGKR +  TH  C RCGR S++++K  CAAC +  +R+ R Y WS
Sbjct: 1  MGSGTATFGKRNSTPTHIRCRRCGRVSYNVKKGYCAACGFGRSRRLRKYRWS 52

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	95
3iz5_l	94	60S ribosomal protein L37 (L37E); eukaryotic ribos	2e-32
2zkr_2	97	60S ribosomal protein L37E; protein-RNA complex, 6	2e-32
4a18_A	94	RPL37, ribosomal protein L37; ribosome, eukaryotic	9e-32
1vq8_1	57	50S ribosomal protein L37E; ribosome 50S, protein-	3e-21

>2zkr_2 60S ribosomal protein L37E; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris} SCOP: i.1.1.1 Length = 97

 Score =  107 bits (268), Expect = 2e-32
 Identities = 64/95 (67%), Positives = 73/95 (76%)

Query: 1  MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRCAACAYPAARKRTYNWSVKAIRRKTTG 60
          M KGT SFGKRRNKTHTLC RCG +++HLQKS C  C YPA RKR YNWS KA RR TTG
Sbjct: 1  MTKGTSSFGKRRNKTHTLCRRCGSKAYHLQKSTCGKCGYPAKRKRKYNWSAKAKRRNTTG 60

Query: 61 TGRMRYLRHVPRRFKSGFREGTQAAPRKKGAAASA 95
          TGRMR+L+ V RRF+ GFREGT   P++   AAS+
Sbjct: 61 TGRMRHLKIVYRRFRHGFREGTTPKPKRAAVAASS 95

>1vq8_1 50S ribosomal protein L37E; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: g.41.8.2 PDB: 1vq4_1* 1vq5_1* 1vq6_1* 1vq7_1* 1s72_1* 1vq9_1* 1vqk_1* 1vql_1* 1vqm_1* 1vqn_1* 1vqo_1* 1vqp_1* 1yhq_1* 1yi2_1* 1yij_1* 1yit_1* 1yj9_1* 1yjn_1* 1yjw_1* 2otj_1* ... Length = 57

 Score = 78.2 bits (193), Expect = 3e-21
 Identities = 24/54 (44%), Positives = 34/54 (62%), Gaps = 1/54 (1%)

Query: 1  MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRCAACAY-PAARKRTYNWSVKA 53
           G GT S GK+   THT C RCG +S+H +K  C++C +  +A++R Y W  KA
Sbjct: 2  TGAGTPSQGKKNTTTHTKCRRCGEKSYHTKKKVCSSCGFGKSAKRRDYEWQSKA 55

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	95
3iz5_l	94	60S ribosomal protein L37 (L37E); eukaryotic ribos	100.0
4a18_A	94	RPL37, ribosomal protein L37; ribosome, eukaryotic	100.0
2zkr_2	97	60S ribosomal protein L37E; protein-RNA complex, 6	100.0
3j21_e	62	50S ribosomal protein L37E; archaea, archaeal, KIN	100.0
1vq8_1	57	50S ribosomal protein L37E; ribosome 50S, protein-	100.0
3j20_Y	50	30S ribosomal protein S27AE; archaea, archaeal, KI	89.32
3v2d_5	60	50S ribosomal protein L32; ribosome associated inh	87.14
2k4x_A	55	30S ribosomal protein S27AE; metal-binding, ribonu	85.62
3j21_g	51	50S ribosomal protein L40E; archaea, archaeal, KIN	83.9
2zjr_Z	60	50S ribosomal protein L32; ribosome, large ribosom	81.8

>2zkr_2 60S ribosomal protein L37E; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris} SCOP: i.1.1.1

Probab=100.00  E-value=2.5e-57  Score=313.94  Aligned_cols=93  Identities=68%  Similarity=1.165  Sum_probs=50.9

Q ss_pred             CCCCCCCCCCCCCCcccccccCCCccccccccccccccCcccccccCCccccccccccccccccccccccchhcccCcCc
Q 034400            1 MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRCAACAYPAARKRTYNWSVKAIRRKTTGTGRMRYLRHVPRRFKSGFRE   80 (95)
Q Consensus         1 MtKGT~SfGKr~~ktH~lCrRCG~~syH~qKk~Ca~CGyps~k~R~YnWs~Ka~rr~ttGTGRmr~lk~v~rrfkngFre   80 (95)
                      |+|||+||||+|+++|++|+|||+.+||+||++|++||||++++|+||||.||+||+|||||||||||+|+|||+|||||
T Consensus         1 M~KGT~SfGkr~~KtH~lCrRCG~~sfH~qK~~CgkCGYpa~k~R~ynWs~Ka~rr~ttgtGrmr~lk~v~rrfkngfre   80 (97)
T 2zkr_2            1 MTKGTSSFGKRRNKTHTLCRRCGSKAYHLQKSTCGKCGYPAKRKRKYNWSAKAKRRNTTGTGRMRHLKIVYRRFRHGFRE   80 (97)
T ss_dssp             --CCSSSCSCSCCCCEECCTTTCSSCEETTSCCBTTTCTTTSSCCCCSSSSCC---------------------------
T ss_pred             CCCCCCCcccccCCCCCcCCCCCCccCcCccccCcccCCchHhccCcchhhhhhhccCCCcceehHHHHHHHHHhccccc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCcccccccc
Q 034400           81 GTQAAPRKKGAAA   93 (95)
Q Consensus        81 Gt~~~~~~~~~~~   93 (95)
                      |++|+|+++++++
T Consensus        81 g~~~~~~~~~~~~   93 (97)
T 2zkr_2           81 GTTPKPKRAAVAA   93 (97)
T ss_dssp             -------------
T ss_pred             CCCCccccccccc
Confidence            9999988876654

>3j21_e 50S ribosomal protein L37E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}

Probab=100.00  E-value=5e-38  Score=203.22  Aligned_cols=57  Identities=49%  Similarity=0.985  Sum_probs=55.5

Q ss_pred             CCCCCCCCCCCCCC-cccccccCCCccccccccccccccC-cccccccCCccccccccc
Q 034400            1 MGKGTGSFGKRRNK-THTLCVRCGRRSFHLQKSRCAACAY-PAARKRTYNWSVKAIRRK   57 (95)
Q Consensus         1 MtKGT~SfGKr~~k-tH~lCrRCG~~syH~qKk~Ca~CGy-ps~k~R~YnWs~Ka~rr~   57 (95)
                      |+||||||||+|++ |||||||||++|||+||++|++||| |++++|+|||+.||++|.
T Consensus         1 MtKGT~SfGKr~~k~tH~lCrRCG~~syH~qK~~Ca~CGygps~r~R~YnWs~Ka~rr~   59 (62)
T 3j21_e            1 MGSGTATFGKRNSTPTHIRCRRCGRVSYNVKKGYCAACGFGRSRRLRKYRWSKKWKKKK   59 (62)
T ss_dssp             CCSCHHHHCCCSSSCCCCBCSSSCSBCEETTTTEETTTCTTTCSSCCCCTTCSHHHHHH
T ss_pred             CCCCCccccccCCCCceeeecccCcchhccccccccccCCchhhhhccccHHHHhhccc
Confidence            99999999999998 9999999999999999999999999 999999999999998875

>1vq8_1 50S ribosomal protein L37E; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: g.41.8.2 PDB: 1vq4_1* 1vq5_1* 1vq6_1* 1vq7_1* 1s72_1* 1vq9_1* 1vqk_1* 1vql_1* 1vqm_1* 1vqn_1* 1vqo_1* 1vqp_1* 1yhq_1* 1yi2_1* 1yij_1* 1yit_1* 1yj9_1* 1yjn_1* 1yjw_1* 2otj_1* ...

Probab=100.00  E-value=7.4e-38  Score=199.63  Aligned_cols=54  Identities=44%  Similarity=0.939  Sum_probs=53.3

Q ss_pred             CCCCCCCCCCCCCCcccccccCCCccccccccccccccC-cccccccCCcccccc
Q 034400            1 MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRCAACAY-PAARKRTYNWSVKAI   54 (95)
Q Consensus         1 MtKGT~SfGKr~~ktH~lCrRCG~~syH~qKk~Ca~CGy-ps~k~R~YnWs~Ka~   54 (95)
                      |+|||+||||||+||||||||||++|||+||++||+||| |++++|+||||.||+
T Consensus         2 MtKGT~SfGKr~~ktH~~CrRCG~~syH~qK~~Ca~CGygpa~r~R~ynWs~Kak   56 (57)
T 1vq8_1            2 TGAGTPSQGKKNTTTHTKCRRCGEKSYHTKKKVCSSCGFGKSAKRRDYEWQSKAG   56 (57)
T ss_dssp             CCSSHHHHTTCCCCCEEECTTTCSEEEETTTTEETTTCTTTCSSCCCCGGGSCTT
T ss_pred             CCCCCCcccccCCCccccccccCChhhhccccccccccCCchhhhcCcchhhhhc
Confidence            899999999999999999999999999999999999999 999999999999996

>3j20_Y 30S ribosomal protein S27AE; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}

Probab=89.32  E-value=0.13  Score=30.70  Aligned_cols=27  Identities=33%  Similarity=0.931  Sum_probs=20.8

Q ss_pred             CcccccccCCCccc---cccccccccccCc
Q 034400           14 KTHTLCVRCGRRSF---HLQKSRCAACAYP   40 (95)
Q Consensus        14 ktH~lCrRCG~~sy---H~qKk~Ca~CGyp   40 (95)
                      ...-.|++||...|   |.....|++|||-
T Consensus        17 ~~~k~CP~CG~~~fm~~~~~R~~C~kCG~t   46 (50)
T 3j20_Y           17 RKNKFCPRCGPGVFMADHGDRWACGKCGYT   46 (50)
T ss_dssp             CSSEECSSSCSSCEEEECSSEEECSSSCCE
T ss_pred             EecccCCCCCCceEEecCCCeEECCCCCCE
Confidence            35667999998554   5567799999984

>3v2d_5 50S ribosomal protein L32; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 2hgq_4 2hgj_4 2hgu_4 2j03_5 2jl6_5 2jl8_5 2v47_5 2v49_5 2wdi_5 2wdj_5 2wdl_5 2wdn_5 2wh2_5 2wh4_5 2wrj_5 2wrl_5 2wro_5 2wrr_5 2x9s_5 2x9u_5 ...

Probab=87.14  E-value=0.21  Score=31.05  Aligned_cols=25  Identities=24%  Similarity=0.642  Sum_probs=21.9

Q ss_pred             CCcccccccCCCccccccccccccccC
Q 034400           13 NKTHTLCVRCGRRSFHLQKSRCAACAY   39 (95)
Q Consensus        13 ~ktH~lCrRCG~~syH~qKk~Ca~CGy   39 (95)
                      ..+-+.|.-||.  +|+.+..|..|||
T Consensus        27 ~p~l~~c~~cGe--~~~~H~vc~~CG~   51 (60)
T 3v2d_5           27 PPTLVPCPECKA--MKPPHTVCPECGY   51 (60)
T ss_dssp             CCCCEECTTTCC--EECTTSCCTTTCE
T ss_pred             CCceeECCCCCC--eecceEEcCCCCc
Confidence            345688999998  8999999999998

>2k4x_A 30S ribosomal protein S27AE; metal-binding, ribonucleoprotein, zinc, zinc-finger, structural genomics, PSI-2; NMR {Thermoplasma acidophilum} SCOP: g.41.8.8

Probab=85.62  E-value=0.35  Score=29.34  Aligned_cols=27  Identities=37%  Similarity=1.046  Sum_probs=22.0

Q ss_pred             CcccccccCCCccc---cccccccccccCc
Q 034400           14 KTHTLCVRCGRRSF---HLQKSRCAACAYP   40 (95)
Q Consensus        14 ktH~lCrRCG~~sy---H~qKk~Ca~CGyp   40 (95)
                      +..-.|+.||.-.|   |.....|+.|||-
T Consensus        16 ~~~~fCPkCG~~~~ma~~~dr~~C~kCgyt   45 (55)
T 2k4x_A           16 RKHRFCPRCGPGVFLAEHADRYSCGRCGYT   45 (55)
T ss_dssp             CSSCCCTTTTTTCCCEECSSEEECTTTCCC
T ss_pred             EccccCcCCCCceeEeccCCEEECCCCCCE
Confidence            45788999999554   6677899999995

>3j21_g 50S ribosomal protein L40E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}

Probab=83.90  E-value=0.43  Score=29.01  Aligned_cols=23  Identities=30%  Similarity=0.889  Sum_probs=20.5

Q ss_pred             cccccCCCccccccccccccccCc
Q 034400           17 TLCVRCGRRSFHLQKSRCAACAYP   40 (95)
Q Consensus        17 ~lCrRCG~~syH~qKk~Ca~CGyp   40 (95)
                      -+|++||.+ -+..-..|-.|||.
T Consensus        15 ~iCpkC~a~-~~~gaw~CrKCG~~   37 (51)
T 3j21_g           15 YVCLRCGAT-NPWGAKKCRKCGYK   37 (51)
T ss_dssp             EECTTTCCE-ECTTCSSCSSSSSC
T ss_pred             ccCCCCCCc-CCCCceecCCCCCc
Confidence            469999999 78888999999996

>2zjr_Z 50S ribosomal protein L32; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: g.41.8.5 PDB: 1j5a_M* 1jzy_M* 1jzz_M* 1k01_M* 1nkw_Z 1ond_Z* 1sm1_Z* 1yl3_5 2b66_5 2b9n_5 2b9p_5 2zjp_Y* 2zjq_Z 1jzx_M 3cf5_Y* 3dll_Y* 3pio_Z* 3pip_Z* 1nwy_Z* 1nwx_Z* ...

Probab=81.80  E-value=0.66  Score=28.69  Aligned_cols=25  Identities=28%  Similarity=0.727  Sum_probs=21.9

Q ss_pred             CCcccccccCCCccccccccccccccC
Q 034400           13 NKTHTLCVRCGRRSFHLQKSRCAACAY   39 (95)
Q Consensus        13 ~ktH~lCrRCG~~syH~qKk~Ca~CGy   39 (95)
                      ..+-+.|.-||..  ++....|..|||
T Consensus        27 ~p~l~~c~~cG~~--~~pH~vc~~CG~   51 (60)
T 2zjr_Z           27 APNLTECPQCHGK--KLSHHICPNCGY   51 (60)
T ss_dssp             CCCCEECTTTCCE--ECTTBCCTTTCB
T ss_pred             CCCceECCCCCCE--eCCceEcCCCCc
Confidence            4567789999987  999999999997

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	95
d1vqo11	56	g.41.8.2 (1:1-56) Ribosomal protein L37e {Archaeon	9e-19

>d1vqo11 g.41.8.2 (1:1-56) Ribosomal protein L37e {Archaeon Haloarcula marismortui [TaxId: 2238]} Length = 56

class: Small proteins
fold: Rubredoxin-like
superfamily: Zn-binding ribosomal proteins
family: Ribosomal protein L37e
domain: Ribosomal protein L37e
species: Archaeon Haloarcula marismortui [TaxId: 2238]

 Score = 70.5 bits (173), Expect = 9e-19
 Identities = 24/53 (45%), Positives = 34/53 (64%), Gaps = 1/53 (1%)

Query: 2  GKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRCAACAY-PAARKRTYNWSVKA 53
          G GT S GK+   THT C RCG +S+H +K  C++C +  +A++R Y W  KA
Sbjct: 2  GAGTPSQGKKNTTTHTKCRRCGEKSYHTKKKVCSSCGFGKSAKRRDYEWQSKA 54

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	95
d1vqo11	56	Ribosomal protein L37e {Archaeon Haloarcula marism	100.0
d2k4xa1	55	Ribosomal protein S27ae {Thermoplasma acidophilum	89.94
d2j0151	59	Ribosomal protein L32p {Thermus thermophilus [TaxI	85.4
d2zjrz1	58	Ribosomal protein L32p {Deinococcus radiodurans [T	83.9

>d1vqo11 g.41.8.2 (1:1-56) Ribosomal protein L37e {Archaeon Haloarcula marismortui [TaxId: 2238]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Zn-binding ribosomal proteins
family: Ribosomal protein L37e
domain: Ribosomal protein L37e
species: Archaeon Haloarcula marismortui [TaxId: 2238]

Probab=100.00  E-value=1.3e-35  Score=187.35  Aligned_cols=53  Identities=45%  Similarity=0.960  Sum_probs=51.5

Q ss_pred             CCCCCCCCCCCCCcccccccCCCccccccccccccccC-cccccccCCcccccc
Q 034400            2 GKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRCAACAY-PAARKRTYNWSVKAI   54 (95)
Q Consensus         2 tKGT~SfGKr~~ktH~lCrRCG~~syH~qKk~Ca~CGy-ps~k~R~YnWs~Ka~   54 (95)
                      .||||||||+|++|||+|||||++|||+||++||+||| |++++|+|||+.||-
T Consensus         2 gKGT~SfGKr~~ktH~~CrRCGr~syH~qK~~CasCGyg~s~k~R~ynW~~Ka~   55 (56)
T d1vqo11           2 GAGTPSQGKKNTTTHTKCRRCGEKSYHTKKKVCSSCGFGKSAKRRDYEWQSKAG   55 (56)
T ss_dssp             CTTHHHHTTCCCCCEEECTTTCSEEEETTTTEETTTCTTTCSSCCCCGGGSCTT
T ss_pred             CCCCCCccccCCCccchhhccCchhhhhccccccccCCCcccceecccchhccc
Confidence            59999999999999999999999999999999999999 999999999999984

>d2k4xa1 g.41.8.8 (A:1-55) Ribosomal protein S27ae {Thermoplasma acidophilum [TaxId: 2303]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Zn-binding ribosomal proteins
family: Ribosomal protein S27a
domain: Ribosomal protein S27ae
species: Thermoplasma acidophilum [TaxId: 2303]

Probab=89.94  E-value=0.059  Score=32.29  Aligned_cols=27  Identities=37%  Similarity=1.046  Sum_probs=22.2

Q ss_pred             CcccccccCCCccc---cccccccccccCc
Q 034400           14 KTHTLCVRCGRRSF---HLQKSRCAACAYP   40 (95)
Q Consensus        14 ktH~lCrRCG~~sy---H~qKk~Ca~CGyp   40 (95)
                      ...-.|++||--.|   |.....|+.|||-
T Consensus        16 r~~k~CP~CG~GvFmA~H~dR~~CGKCgyT   45 (55)
T d2k4xa1          16 RKHRFCPRCGPGVFLAEHADRYSCGRCGYT   45 (55)
T ss_dssp             CSSCCCTTTTTTCCCEECSSEEECTTTCCC
T ss_pred             EecCcCcCCCCcEEeeecCCCccccCCccc
Confidence            45667999998554   8888999999995

>d2j0151 g.41.8.5 (5:2-60) Ribosomal protein L32p {Thermus thermophilus [TaxId: 274]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Zn-binding ribosomal proteins
family: Ribosomal protein L32p
domain: Ribosomal protein L32p
species: Thermus thermophilus [TaxId: 274]

Probab=85.40  E-value=0.22  Score=29.39  Aligned_cols=25  Identities=24%  Similarity=0.642  Sum_probs=21.9

Q ss_pred             CCcccccccCCCccccccccccccccC
Q 034400           13 NKTHTLCVRCGRRSFHLQKSRCAACAY   39 (95)
Q Consensus        13 ~ktH~lCrRCG~~syH~qKk~Ca~CGy   39 (95)
                      ..+-+.|.-||.  +++-+-.|.+|||
T Consensus        26 ~p~l~~C~~CG~--~~~pHrvC~~CG~   50 (59)
T d2j0151          26 PPTLVPCPECKA--MKPPHTVCPECGY   50 (59)
T ss_dssp             CCCCBCCSSSSS--CBCTTCBCTTTCC
T ss_pred             CCceeECCCCCC--cccceeECCCCCe
Confidence            356688999998  8999999999998

>d2zjrz1 g.41.8.5 (Z:2-59) Ribosomal protein L32p {Deinococcus radiodurans [TaxId: 1299]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Zn-binding ribosomal proteins
family: Ribosomal protein L32p
domain: Ribosomal protein L32p
species: Deinococcus radiodurans [TaxId: 1299]

Probab=83.90  E-value=0.24  Score=29.21  Aligned_cols=25  Identities=28%  Similarity=0.647  Sum_probs=22.0

Q ss_pred             CCcccccccCCCccccccccccccccC
Q 034400           13 NKTHTLCVRCGRRSFHLQKSRCAACAY   39 (95)
Q Consensus        13 ~ktH~lCrRCG~~syH~qKk~Ca~CGy   39 (95)
                      ..+-+.|..||.  +++..-.|.+|||
T Consensus        26 ~p~l~~C~~CG~--~~lpHrvC~~CG~   50 (58)
T d2zjrz1          26 APNLTECPQCHG--KKLSHHICPNCGY   50 (58)
T ss_dssp             CCCCEECTTTCC--EECTTBCCTTTCB
T ss_pred             CCceeECCCCCC--CccceeeCCCCCc
Confidence            356788999998  8999999999998