Citrus Sinensis ID: 034401

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-----
Protein Sequence
MATSRSSILFLVSILLLITLSNVAEAYGRGKLRSSECNPKCSYRCSATSHKKPCMFFCLKCCSKCLCVPPGTYGNKQVCPCYNNWKTKEGGPKCP
Secondary Structure (PSIPRED)
ccHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHccccccHHHHHHHHHHccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccHHHHHHcccccccHHHHHHHHHHHHccccccccccccccccccccccccccccccc
Coil and Loop (DISEMBL)
MATSRSSILFLVSILLLITLSNVAEAygrgklrssecnpkcsyrcsatshkkpcmffclkccskclcvppgtygnkqvcpcynnwktkeggpkcp
Flexible Loop (DISEMBL)
MATSRSSILFLVSILLLITLSNVAEAYGrgklrssecnpkCSYRCSATSHKKPCMFFCLKCCSKCLCVPPGtygnkqvcpcynnwktkeggpkcp
Low Complexity Region (SEG)
MATsrssilflvsilllitlsNVAEAYGRGKLRSSECNPKCSYRCSATSHKKPcmffclkccskclcVPPGTYGNKQVCPCYNNWKTKEGGPKCP
Disordered region (IsUnstruct)
*******ILFLVSILLLITLSNVAEAYGRGKLRSSECNPKCSYRCSATSHKKPCMFFCLKCCSKCLCVPPGTYGNKQVCPCYNNWK*********
Disordered Region (DISOPRED)
***SRSSILFLVSILLLIT*****************CNPKCSYRCSATSHKKPCMFFCLKCCSKCLCVPPGTYGNKQVCPCYNNWKTKE******
Disordered Region (DISEMBL)
MATSRSSILFLVSILLLITLSNVAEAYGRGKLRSSECNPKCSYRCSATSHKKPCMFFCLKCCSKCLCVPPGTYGNKQVCPCYNNWK*********
Disordered Region (DISPRO)
MATSRSSILFLVSILLLITLSNVAEA*GRGKLRSSECNPKCSYRCSATSHKKPCMFFCLKCCSKCLCVPPGTYGNKQVCPCYNNWKT******C*
Transmembrane Helix (TMHMM)
iiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MATSRSSILFLVSILLLITLSNVAEAYGRGKLRSSECNPKCSYRCSATSHKKPCMFFCLKCCSKCLCVPPGTYGNKQVCPCYNNWKTKEGGPKCP
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	95	2.2.26 [Sep-21-2011]
P47926	96	Protein RSI-1 OS=Solanum	N/A	no	0.926	0.916	0.692	1e-30
Q6NMQ7	101	Gibberellin-regulated pro	yes	no	1.0	0.940	0.584	2e-27
P27057	112	Protein GAST1 OS=Solanum	N/A	no	0.705	0.598	0.776	6e-26
P46690	106	Gibberellin-regulated pro	no	no	0.989	0.886	0.504	9e-23
Q84J95	97	Gibberellin-regulated pro	no	no	0.768	0.752	0.808	1e-22
Q6GKX7	106	Gibberellin-regulated pro	no	no	0.926	0.830	0.574	3e-20
A8MR46	103	Gibberellin-regulated pro	no	no	1.0	0.922	0.601	2e-19
O80641	87	Gibberellin-regulated pro	no	no	0.842	0.919	0.413	5e-13
P86888	63	Peamaclein OS=Prunus pers	N/A	no	0.652	0.984	0.532	1e-11
Q8LFM2	89	Gibberellin-regulated pro	no	no	0.905	0.966	0.413	7e-11

>sp|P47926|RSI1_SOLLC Protein RSI-1 OS=Solanum lycopersicum GN=RSI-1 PE=2 SV=1

 Score =  131 bits (330), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 63/91 (69%), Positives = 74/91 (81%), Gaps = 3/91 (3%)

Query: 6  SSILFLVSI-LLLITLSNVAEAYGRGKLRSSECNPKCSYRCSATSHKKPCMFFCLKCCSK 64
          +S L L+S+ L+L+T SNV E Y   KLR ++C P+C+YRCSATSHKKPCMFFC KCC+ 
Sbjct: 8  ASFLLLISMFLILLTFSNVVEGYN--KLRPTDCKPRCTYRCSATSHKKPCMFFCQKCCAT 65

Query: 65 CLCVPPGTYGNKQVCPCYNNWKTKEGGPKCP 95
          CLCVP G YGNKQ CPCYNNWKT+EG PKCP
Sbjct: 66 CLCVPKGVYGNKQSCPCYNNWKTQEGKPKCP 96

Solanum lycopersicum (taxid: 4081)

>sp|Q6NMQ7|GASA6_ARATH Gibberellin-regulated protein 6 OS=Arabidopsis thaliana GN=GASA6 PE=3 SV=1

 Score =  120 bits (302), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 59/101 (58%), Positives = 71/101 (70%), Gaps = 6/101 (5%)

Query: 1   MATSRSSILFLVSILLLITLSNVAEA------YGRGKLRSSECNPKCSYRCSATSHKKPC 54
           MA   +S L L  +   + L+   EA      YG G L+S +C  +C+ RCS T + KPC
Sbjct: 1   MAKLITSFLLLTILFTFVCLTMSKEAEYHPESYGPGSLKSYQCGGQCTRRCSNTKYHKPC 60

Query: 55  MFFCLKCCSKCLCVPPGTYGNKQVCPCYNNWKTKEGGPKCP 95
           MFFC KCC+KCLCVPPGTYGNKQVCPCYNNWKT++GGPKCP
Sbjct: 61  MFFCQKCCAKCLCVPPGTYGNKQVCPCYNNWKTQQGGPKCP 101

Gibberellin-regulated protein that may function in hormonal controlled steps of development such as seed germination, flowering and seed maturation.

Arabidopsis thaliana (taxid: 3702)

>sp|P27057|GAST1_SOLLC Protein GAST1 OS=Solanum lycopersicum GN=GAST1 PE=2 SV=1

 Score =  115 bits (289), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 52/67 (77%), Positives = 57/67 (85%)

Query: 29  RGKLRSSECNPKCSYRCSATSHKKPCMFFCLKCCSKCLCVPPGTYGNKQVCPCYNNWKTK 88
            G+L   +C PKC+YRCS TS+KKPCMFFC KCC+KCLCVP GTYGNKQ CPCYNNWKTK
Sbjct: 46  EGRLHPQDCQPKCTYRCSKTSYKKPCMFFCQKCCAKCLCVPAGTYGNKQSCPCYNNWKTK 105

Query: 89  EGGPKCP 95
            GGPKCP
Sbjct: 106 RGGPKCP 112

Solanum lycopersicum (taxid: 4081)

>sp|P46690|GASA4_ARATH Gibberellin-regulated protein 4 OS=Arabidopsis thaliana GN=GASA4 PE=1 SV=2

 Score =  105 bits (262), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 54/107 (50%), Positives = 68/107 (63%), Gaps = 13/107 (12%)

Query: 1   MATSRSSILFLVSILLLITLSNVAEA------------YGRGKLRSSECNPKCSYRCSAT 48
           MA S  +I FL+++++L  L  +  A            YG G L+ ++C  +C  RC  T
Sbjct: 1   MAKSYGAI-FLLTLIVLFMLQTMVMASSGSNVKWSQKRYGPGSLKRTQCPSECDRRCKKT 59

Query: 49  SHKKPCMFFCLKCCSKCLCVPPGTYGNKQVCPCYNNWKTKEGGPKCP 95
            + K C+ FC KCC KCLCVPPG YGNKQVC CYNNWKT+EGGPKCP
Sbjct: 60  QYHKACITFCNKCCRKCLCVPPGYYGNKQVCSCYNNWKTQEGGPKCP 106

Gibberellin-regulated protein involved in the regulation of floral meristem and floral organ identity, and promotion of seed size and weight. May play a role in the promotion of gibberellin responses such as regulation of flowering under short-day conditions, seed germination and inhibition of gibberellin oxidase. Possesses redox activity in E.coli and may function in redox regulation in planta.

Arabidopsis thaliana (taxid: 3702)

>sp|Q84J95|GASA5_ARATH Gibberellin-regulated protein 5 OS=Arabidopsis thaliana GN=GASA5 PE=2 SV=1

 Score =  104 bits (260), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 59/73 (80%), Positives = 63/73 (86%)

Query: 23 VAEAYGRGKLRSSECNPKCSYRCSATSHKKPCMFFCLKCCSKCLCVPPGTYGNKQVCPCY 82
          V  A G GKL+  +CN KCS+RCSATSHKKPCMFFCLKCC KCLCVPPGT+GNKQ CPCY
Sbjct: 25 VQAARGGGKLKPQQCNSKCSFRCSATSHKKPCMFFCLKCCKKCLCVPPGTFGNKQTCPCY 84

Query: 83 NNWKTKEGGPKCP 95
          NNWKTKEG PKCP
Sbjct: 85 NNWKTKEGRPKCP 97

Gibberellin-regulated protein that acts as a negative regulator of gibberellin-induced flowering and stem growth. May inhibit flowering and inflorescence growth via a pathway involving GAI and by enhancing FLC expression and repressing FT and LFY. Acts as a negative regulator in thermotolerance by resogulating both salicylic acid (SA) signaling and heat shock-protein accumulation.

Arabidopsis thaliana (taxid: 3702)

>sp|Q6GKX7|GASAC_ARATH Gibberellin-regulated protein 12 OS=Arabidopsis thaliana GN=GASA12 PE=3 SV=1

 Score = 97.1 bits (240), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 58/101 (57%), Positives = 70/101 (69%), Gaps = 13/101 (12%)

Query: 8   ILFLVSILLLIT-------LSNVAEA------YGRGKLRSSECNPKCSYRCSATSHKKPC 54
           ++F++S LL  T       L + A+A       G G L+  EC   C YRCSATSH+KPC
Sbjct: 6   VVFVISSLLFATQFSNGDELESQAQAPAIHKNGGEGSLKPEECPKACEYRCSATSHRKPC 65

Query: 55  MFFCLKCCSKCLCVPPGTYGNKQVCPCYNNWKTKEGGPKCP 95
           +FFC KCC+KCLCVP GTYG+K+ CPCYNNW TKEGGPKCP
Sbjct: 66  LFFCNKCCNKCLCVPSGTYGHKEECPCYNNWTTKEGGPKCP 106

Gibberellin-regulated protein that may function in hormonal controlled steps of development such as seed germination, flowering and seed maturation.

Arabidopsis thaliana (taxid: 3702)

>sp|A8MR46|GASAD_ARATH Gibberellin-regulated protein 13 OS=Arabidopsis thaliana GN=GASA13 PE=3 SV=1

 Score = 94.4 bits (233), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 62/103 (60%), Positives = 72/103 (69%), Gaps = 8/103 (7%)

Query: 1   MATSRSSILFLVSILLLIT------LSNV-AEAYGRGKLRSS-ECNPKCSYRCSATSHKK 52
           MAT  S I+F + +L L+       L NV AE   +  +    EC P+C  RCS T +KK
Sbjct: 1   MATKLSIIVFSIVVLHLLLSAHMHFLINVCAECETKSAIPPLLECGPRCGDRCSNTQYKK 60

Query: 53  PCMFFCLKCCSKCLCVPPGTYGNKQVCPCYNNWKTKEGGPKCP 95
           PC+FFC KCC+KCLCVPPGTYGNKQVCPCYNNWKTK GGPKCP
Sbjct: 61  PCLFFCNKCCNKCLCVPPGTYGNKQVCPCYNNWKTKSGGPKCP 103

Gibberellin-regulated protein that may function in hormonal controlled steps of development such as seed germination, flowering and seed maturation.

Arabidopsis thaliana (taxid: 3702)

>sp|O80641|GASA8_ARATH Gibberellin-regulated protein 8 OS=Arabidopsis thaliana GN=At2g39540 PE=2 SV=1

 Score = 72.8 bits (177), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 36/87 (41%), Positives = 50/87 (57%), Gaps = 7/87 (8%)

Query: 9  LFLVSILLLITLSNVAEAYGRGKLRSSECNPKCSYRCSATSHKKPCMFFCLKCCSKCLCV 68
           F++S+LL  + S ++ A        S C  KC+ RCS     + C+ +C  CC KC CV
Sbjct: 8  FFIISLLLTSSFSVLSSA-------DSSCGGKCNVRCSKAGQHEECLKYCNICCQKCNCV 60

Query: 69 PPGTYGNKQVCPCYNNWKTKEGGPKCP 95
          P GT+G+K  CPCY + K  +GG KCP
Sbjct: 61 PSGTFGHKDECPCYRDMKNSKGGSKCP 87

Gibberellin-regulated protein that may function in hormonal controlled steps of development such as seed germination, flowering and seed maturation.

Arabidopsis thaliana (taxid: 3702)

>sp|P86888|PMLN_PRUPE Peamaclein OS=Prunus persica PE=1 SV=1

 Score = 68.6 bits (166), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 33/62 (53%), Positives = 41/62 (66%)

Query: 34 SSECNPKCSYRCSATSHKKPCMFFCLKCCSKCLCVPPGTYGNKQVCPCYNNWKTKEGGPK 93
          SS C+ KC  RCS   +++ C+ +C  CC KC CVP GTYGNK  CPCY + K  +G PK
Sbjct: 2  SSFCDSKCGVRCSKAGYQERCLKYCGICCEKCHCVPSGTYGNKDECPCYRDLKNSKGNPK 61

Query: 94 CP 95
          CP
Sbjct: 62 CP 63

Prunus persica (taxid: 3760)

>sp|Q8LFM2|GASAA_ARATH Gibberellin-regulated protein 10 OS=Arabidopsis thaliana GN=GASA10 PE=2 SV=1

 Score = 65.9 bits (159), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 36/87 (41%), Positives = 47/87 (54%), Gaps = 1/87 (1%)

Query: 10 FLVSILLLITLSNVAEAYGRGKLRSSECNPKCSYRCSATSHKKPCMFFCLKCCSKC-LCV 68
          F    +L+I+L   +  +      SS C  KC+ RCS    +  C+ +C  CC KC  CV
Sbjct: 3  FPAVKVLIISLLITSSLFILSTADSSPCGGKCNVRCSKAGRQDRCLKYCNICCEKCNYCV 62

Query: 69 PPGTYGNKQVCPCYNNWKTKEGGPKCP 95
          P GTYGNK  CPCY + K  +G  KCP
Sbjct: 63 PSGTYGNKDECPCYRDMKNSKGTSKCP 89

Gibberellin-regulated protein that may function in hormonal controlled steps of development such as seed germination, flowering and seed maturation.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	95
388511755	96	unknown [Lotus japonicus]	0.968	0.958	0.782	2e-36
323319529	97	gibberellic acid-stimulated protein 1 [G	0.989	0.969	0.778	7e-36
356553293	97	PREDICTED: protein RSI-1-like [Glycine m	0.989	0.969	0.768	3e-35
351721233	97	uncharacterized protein LOC100306189 pre	0.989	0.969	0.768	6e-35
357521744	96	GASA5-like protein [Medicago truncatula]	0.989	0.979	0.744	7e-31
224065190	95	predicted protein [Populus trichocarpa]	0.957	0.957	0.771	6e-30
2982285	110	GASA5-like protein [Picea mariana]	0.915	0.790	0.680	3e-29
350534694	96	protein RSI-1 precursor [Solanum lycoper	0.926	0.916	0.692	5e-29
116782162	108	unknown [Picea sitchensis] gi|116782328|	0.915	0.805	0.666	7e-28
332591468	108	gasa5 like protein [Pinus pinaster]	0.915	0.805	0.666	7e-28

>gi|388511755|gb|AFK43939.1| unknown [Lotus japonicus]

 Score =  155 bits (393), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 72/92 (78%), Positives = 81/92 (88%)

Query: 4  SRSSILFLVSILLLITLSNVAEAYGRGKLRSSECNPKCSYRCSATSHKKPCMFFCLKCCS 63
          S SS L  +S+L+L+T SNVAEAYG  KLR S+C PKC+YRCSATSHKKPCMFFC KCC+
Sbjct: 5  SYSSFLIAISLLVLVTFSNVAEAYGSAKLRPSDCKPKCTYRCSATSHKKPCMFFCQKCCA 64

Query: 64 KCLCVPPGTYGNKQVCPCYNNWKTKEGGPKCP 95
          KCLCVPPG YGNK+VCPCYN+WKTKEGGPKCP
Sbjct: 65 KCLCVPPGVYGNKEVCPCYNSWKTKEGGPKCP 96

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|323319529|gb|ADX36135.1| gibberellic acid-stimulated protein 1 [Glycine soja]

 Score =  154 bits (389), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 74/95 (77%), Positives = 83/95 (87%), Gaps = 1/95 (1%)

Query: 2  ATSRSSILFLVSILLLITLSNVAEAYGR-GKLRSSECNPKCSYRCSATSHKKPCMFFCLK 60
          A S S I+  +S+LLL+T SNVAEAY R G LR S+C PKC+YRCSATSHKKPCMFFC K
Sbjct: 3  ARSYSPIMVALSLLLLVTFSNVAEAYTRSGTLRPSDCKPKCTYRCSATSHKKPCMFFCQK 62

Query: 61 CCSKCLCVPPGTYGNKQVCPCYNNWKTKEGGPKCP 95
          CC+KCLCVPPGTYGNKQ+CPCYN+WKTKEGGPKCP
Sbjct: 63 CCAKCLCVPPGTYGNKQICPCYNSWKTKEGGPKCP 97

Source: Glycine soja

Species: Glycine soja

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356553293|ref|XP_003544991.1| PREDICTED: protein RSI-1-like [Glycine max]

 Score =  152 bits (383), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 73/95 (76%), Positives = 82/95 (86%), Gaps = 1/95 (1%)

Query: 2  ATSRSSILFLVSILLLITLSNVAEAYGR-GKLRSSECNPKCSYRCSATSHKKPCMFFCLK 60
          A S S  +  +S+LLL+T SNVAEAY R G LR S+C P+C+YRCSATSHKKPCMFFC K
Sbjct: 3  ARSYSPTMVALSLLLLVTFSNVAEAYTRSGTLRPSDCKPRCTYRCSATSHKKPCMFFCQK 62

Query: 61 CCSKCLCVPPGTYGNKQVCPCYNNWKTKEGGPKCP 95
          CC+KCLCVPPGTYGNKQVCPCYN+WKTKEGGPKCP
Sbjct: 63 CCAKCLCVPPGTYGNKQVCPCYNSWKTKEGGPKCP 97

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351721233|ref|NP_001235155.1| uncharacterized protein LOC100306189 precursor [Glycine max] gi|255627813|gb|ACU14251.1| unknown [Glycine max]

 Score =  151 bits (381), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 73/95 (76%), Positives = 82/95 (86%), Gaps = 1/95 (1%)

Query: 2  ATSRSSILFLVSILLLITLSNVAEAYGR-GKLRSSECNPKCSYRCSATSHKKPCMFFCLK 60
          A S S I+  +S+LLL+T SNVAEAY R G LR S+C PKC+YRCSATSHKKPCMFFC K
Sbjct: 3  ARSYSPIMVALSLLLLVTFSNVAEAYTRSGTLRPSDCKPKCTYRCSATSHKKPCMFFCQK 62

Query: 61 CCSKCLCVPPGTYGNKQVCPCYNNWKTKEGGPKCP 95
          CC+KCLCVPPGTYGNKQ+CP YN+WKTKEGGPKCP
Sbjct: 63 CCAKCLCVPPGTYGNKQICPFYNSWKTKEGGPKCP 97

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357521744|ref|XP_003616284.1| GASA5-like protein [Medicago truncatula] gi|355517619|gb|AES99242.1| GASA5-like protein [Medicago truncatula]

 Score =  137 bits (345), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 70/94 (74%), Positives = 80/94 (85%)

Query: 2  ATSRSSILFLVSILLLITLSNVAEAYGRGKLRSSECNPKCSYRCSATSHKKPCMFFCLKC 61
          A    SIL ++S+LLL+T SNVAEAYGR KLR  +C P+C+YRCSATSHKKPCMFFC KC
Sbjct: 3  ARCNGSILVVMSLLLLVTFSNVAEAYGRAKLRPQDCKPRCTYRCSATSHKKPCMFFCQKC 62

Query: 62 CSKCLCVPPGTYGNKQVCPCYNNWKTKEGGPKCP 95
          C+ CLCVPPG YGNKQVCPCYN+WKT+EG PKCP
Sbjct: 63 CATCLCVPPGVYGNKQVCPCYNSWKTQEGKPKCP 96

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224065190|ref|XP_002301708.1| predicted protein [Populus trichocarpa] gi|222843434|gb|EEE80981.1| predicted protein [Populus trichocarpa]

 Score =  134 bits (338), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 71/92 (77%), Positives = 81/92 (88%), Gaps = 1/92 (1%)

Query: 4  SRSSILFLVSILLLITLSNVAEAYGRGKLRSSECNPKCSYRCSATSHKKPCMFFCLKCCS 63
          SR+S+L ++S+ LLIT SNVAE +G  KLR SEC P+C+YRCSATSHKKPCMFFCLKCC+
Sbjct: 5  SRNSLLVVLSLCLLITFSNVAEIHG-AKLRPSECKPRCNYRCSATSHKKPCMFFCLKCCA 63

Query: 64 KCLCVPPGTYGNKQVCPCYNNWKTKEGGPKCP 95
           CLCVPPGTYGNK+ CPCYNNWKTKEG PKCP
Sbjct: 64 TCLCVPPGTYGNKETCPCYNNWKTKEGRPKCP 95

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|2982285|gb|AAC32128.1| GASA5-like protein [Picea mariana]

 Score =  132 bits (332), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 64/94 (68%), Positives = 72/94 (76%), Gaps = 7/94 (7%)

Query: 9   LFLVSILLLITLSNVAE-------AYGRGKLRSSECNPKCSYRCSATSHKKPCMFFCLKC 61
           LF+ +I   +  SNV          YG G LR SEC  +CSYRCSATSHKKPCMFFC KC
Sbjct: 17  LFIWNIEAALPHSNVDPFMEQKQGQYGEGSLRPSECGQRCSYRCSATSHKKPCMFFCQKC 76

Query: 62  CSKCLCVPPGTYGNKQVCPCYNNWKTKEGGPKCP 95
           C+KCLCVPPGT+GNKQVCPCYNNWKT++GGPKCP
Sbjct: 77  CAKCLCVPPGTFGNKQVCPCYNNWKTQQGGPKCP 110

Source: Picea mariana

Species: Picea mariana

Genus: Picea

Family: Pinaceae

Order: Coniferales

Class: Coniferopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|350534694|ref|NP_001234666.1| protein RSI-1 precursor [Solanum lycopersicum] gi|1351018|sp|P47926.1|RSI1_SOLLC RecName: Full=Protein RSI-1; AltName: Full=TR132; Flags: Precursor gi|405585|gb|AAA20129.1| RSI-1 protein [Solanum lycopersicum] gi|405587|gb|AAA20130.1| RSI-1 protein [Solanum lycopersicum]

 Score =  131 bits (330), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 63/91 (69%), Positives = 74/91 (81%), Gaps = 3/91 (3%)

Query: 6  SSILFLVSI-LLLITLSNVAEAYGRGKLRSSECNPKCSYRCSATSHKKPCMFFCLKCCSK 64
          +S L L+S+ L+L+T SNV E Y   KLR ++C P+C+YRCSATSHKKPCMFFC KCC+ 
Sbjct: 8  ASFLLLISMFLILLTFSNVVEGYN--KLRPTDCKPRCTYRCSATSHKKPCMFFCQKCCAT 65

Query: 65 CLCVPPGTYGNKQVCPCYNNWKTKEGGPKCP 95
          CLCVP G YGNKQ CPCYNNWKT+EG PKCP
Sbjct: 66 CLCVPKGVYGNKQSCPCYNNWKTQEGKPKCP 96

Source: Solanum lycopersicum

Species: Solanum lycopersicum

Genus: Solanum

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|116782162|gb|ABK22391.1| unknown [Picea sitchensis] gi|116782328|gb|ABK22466.1| unknown [Picea sitchensis] gi|224284506|gb|ACN39986.1| unknown [Picea sitchensis]

 Score =  127 bits (320), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 62/93 (66%), Positives = 70/93 (75%), Gaps = 6/93 (6%)

Query: 9   LFLVSILLLITLSN------VAEAYGRGKLRSSECNPKCSYRCSATSHKKPCMFFCLKCC 62
           LF+ +I   +  SN           G G+L  SEC  +CSYRCSATSHKKPCMFFC KCC
Sbjct: 16  LFIWNIEAALPYSNGDTWMQQKRGRGSGRLHPSECGGRCSYRCSATSHKKPCMFFCQKCC 75

Query: 63  SKCLCVPPGTYGNKQVCPCYNNWKTKEGGPKCP 95
           +KCLCVPPGTYGNKQVCPCYNNWKT++GGPKCP
Sbjct: 76  AKCLCVPPGTYGNKQVCPCYNNWKTQQGGPKCP 108

Source: Picea sitchensis

Species: Picea sitchensis

Genus: Picea

Family: Pinaceae

Order: Coniferales

Class: Coniferopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|332591468|emb|CBL95259.1| gasa5 like protein [Pinus pinaster]

 Score =  127 bits (320), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 62/93 (66%), Positives = 70/93 (75%), Gaps = 6/93 (6%)

Query: 9   LFLVSILLLITLSNVA------EAYGRGKLRSSECNPKCSYRCSATSHKKPCMFFCLKCC 62
           LF+ +I   +  SN           G G+L  SEC  +CSYRCSATSHKKPCMFFC KCC
Sbjct: 16  LFIWNIEAALPYSNGGTWMEQKRGRGSGRLHPSECGGRCSYRCSATSHKKPCMFFCQKCC 75

Query: 63  SKCLCVPPGTYGNKQVCPCYNNWKTKEGGPKCP 95
           +KCLCVPPGTYGNKQVCPCYNNWKT++GGPKCP
Sbjct: 76  AKCLCVPPGTYGNKQVCPCYNNWKTQQGGPKCP 108

Source: Pinus pinaster

Species: Pinus pinaster

Genus: Pinus

Family: Pinaceae

Order: Coniferales

Class: Coniferopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	95
TAIR|locus:505006327	97	GASA5 "GAST1 protein homolog 5	0.768	0.752	0.630	3.4e-22
TAIR|locus:2019195	101	GASA6 "AT1G74670" [Arabidopsis	0.747	0.702	0.563	1.2e-19
TAIR|locus:2052876	106	AT2G30810 [Arabidopsis thalian	0.715	0.641	0.573	1.1e-18
TAIR|locus:4010713737	103	AT3G10185 [Arabidopsis thalian	0.631	0.582	0.633	2.8e-18
TAIR|locus:2150896	106	GASA4 "AT5G15230" [Arabidopsis	0.726	0.650	0.507	3.7e-16
TAIR|locus:4010713424	90	AT1G10588 [Arabidopsis thalian	0.642	0.677	0.437	7.6e-09
TAIR|locus:2039732	87	AT2G39540 [Arabidopsis thalian	0.642	0.701	0.377	4.2e-08
TAIR|locus:505006706	89	AT5G59845 "AT5G59845" [Arabido	0.652	0.696	0.396	8.7e-08
TAIR|locus:2147810	275	GASA14 "AT5G14920" [Arabidopsi	0.631	0.218	0.426	1.3e-07
TAIR|locus:2136897	99	GASA2 "AT4G09610" [Arabidopsis	0.705	0.676	0.367	4.8e-07

TAIR|locus:505006327 GASA5 "GAST1 protein homolog 5" [Arabidopsis thaliana (taxid:3702)]

 Score = 258 (95.9 bits), Expect = 3.4e-22, P = 3.4e-22
 Identities = 46/73 (63%), Positives = 50/73 (68%)

Query:    23 VAEAYGRGKLRSSECNPKCSYRCSATSHKKPXXXXXXXXXXXXXXVPPGTYGNKQVCPCY 82
             V  A G GKL+  +CN KCS+RCSATSHKKP              VPPGT+GNKQ CPCY
Sbjct:    25 VQAARGGGKLKPQQCNSKCSFRCSATSHKKPCMFFCLKCCKKCLCVPPGTFGNKQTCPCY 84

Query:    83 NNWKTKEGGPKCP 95
             NNWKTKEG PKCP
Sbjct:    85 NNWKTKEGRPKCP 97

GO:0005576 "extracellular region" evidence=ISM

GO:0009739 "response to gibberellin stimulus" evidence=ISS

GO:0009506 "plasmodesma" evidence=IDA

GO:0009408 "response to heat" evidence=IMP

GO:0009751 "response to salicylic acid stimulus" evidence=IMP

GO:0010286 "heat acclimation" evidence=IMP

TAIR|locus:2019195 GASA6 "AT1G74670" [Arabidopsis thaliana (taxid:3702)]

 Score = 234 (87.4 bits), Expect = 1.2e-19, P = 1.2e-19
 Identities = 40/71 (56%), Positives = 48/71 (67%)

Query:    25 EAYGRGKLRSSECNPKCSYRCSATSHKKPXXXXXXXXXXXXXXVPPGTYGNKQVCPCYNN 84
             E+YG G L+S +C  +C+ RCS T + KP              VPPGTYGNKQVCPCYNN
Sbjct:    31 ESYGPGSLKSYQCGGQCTRRCSNTKYHKPCMFFCQKCCAKCLCVPPGTYGNKQVCPCYNN 90

Query:    85 WKTKEGGPKCP 95
             WKT++GGPKCP
Sbjct:    91 WKTQQGGPKCP 101

GO:0003674 "molecular_function" evidence=ND

GO:0005576 "extracellular region" evidence=ISM

GO:0009739 "response to gibberellin stimulus" evidence=ISS

GO:0009740 "gibberellic acid mediated signaling pathway" evidence=RCA;TAS

GO:0009744 "response to sucrose stimulus" evidence=IEP

GO:0009749 "response to glucose stimulus" evidence=IEP

GO:0009750 "response to fructose stimulus" evidence=IEP

GO:0080167 "response to karrikin" evidence=IEP

GO:0010162 "seed dormancy process" evidence=RCA

TAIR|locus:2052876 AT2G30810 [Arabidopsis thaliana (taxid:3702)]

 Score = 225 (84.3 bits), Expect = 1.1e-18, P = 1.1e-18
 Identities = 39/68 (57%), Positives = 43/68 (63%)

Query:    28 GRGKLRSSECNPKCSYRCSATSHKKPXXXXXXXXXXXXXXVPPGTYGNKQVCPCYNNWKT 87
             G G L+  EC   C YRCSATSH+KP              VP GTYG+K+ CPCYNNW T
Sbjct:    39 GEGSLKPEECPKACEYRCSATSHRKPCLFFCNKCCNKCLCVPSGTYGHKEECPCYNNWTT 98

Query:    88 KEGGPKCP 95
             KEGGPKCP
Sbjct:    99 KEGGPKCP 106

GO:0005576 "extracellular region" evidence=ISM

GO:0009739 "response to gibberellin stimulus" evidence=ISS

TAIR|locus:4010713737 AT3G10185 [Arabidopsis thaliana (taxid:3702)]

 Score = 221 (82.9 bits), Expect = 2.8e-18, P = 2.8e-18
 Identities = 38/60 (63%), Positives = 40/60 (66%)

Query:    36 ECNPKCSYRCSATSHKKPXXXXXXXXXXXXXXVPPGTYGNKQVCPCYNNWKTKEGGPKCP 95
             EC P+C  RCS T +KKP              VPPGTYGNKQVCPCYNNWKTK GGPKCP
Sbjct:    44 ECGPRCGDRCSNTQYKKPCLFFCNKCCNKCLCVPPGTYGNKQVCPCYNNWKTKSGGPKCP 103

GO:0005576 "extracellular region" evidence=ISM

TAIR|locus:2150896 GASA4 "AT5G15230" [Arabidopsis thaliana (taxid:3702)]

 Score = 201 (75.8 bits), Expect = 3.7e-16, P = 3.7e-16
 Identities = 35/69 (50%), Positives = 41/69 (59%)

Query:    27 YGRGKLRSSECNPKCSYRCSATSHKKPXXXXXXXXXXXXXXVPPGTYGNKQVCPCYNNWK 86
             YG G L+ ++C  +C  RC  T + K               VPPG YGNKQVC CYNNWK
Sbjct:    38 YGPGSLKRTQCPSECDRRCKKTQYHKACITFCNKCCRKCLCVPPGYYGNKQVCSCYNNWK 97

Query:    87 TKEGGPKCP 95
             T+EGGPKCP
Sbjct:    98 TQEGGPKCP 106

GO:0003674 "molecular_function" evidence=ND

GO:0005576 "extracellular region" evidence=ISM

GO:0009740 "gibberellic acid mediated signaling pathway" evidence=TAS

GO:0045454 "cell redox homeostasis" evidence=IMP

GO:0019344 "cysteine biosynthetic process" evidence=RCA

GO:0009739 "response to gibberellin stimulus" evidence=IMP

TAIR|locus:4010713424 AT1G10588 [Arabidopsis thaliana (taxid:3702)]

 Score = 132 (51.5 bits), Expect = 7.6e-09, P = 7.6e-09
 Identities = 28/64 (43%), Positives = 33/64 (51%)

Query:    34 SSECNPKCSYRCSAT--SHKKPXXXXXXXXXXXXXXVPPGTYGNKQVCPCYNNWKTKEGG 91
             SS C  KCS RCS    +H++               VP GTYGNK  CPCY + K  +GG
Sbjct:    28 SSACGGKCSVRCSKADRTHEE-CLEDCDICCQKCNCVPSGTYGNKDECPCYRDMKNSKGG 86

Query:    92 PKCP 95
              KCP
Sbjct:    87 SKCP 90

GO:0005576 "extracellular region" evidence=ISM

TAIR|locus:2039732 AT2G39540 [Arabidopsis thaliana (taxid:3702)]

 Score = 125 (49.1 bits), Expect = 4.2e-08, P = 4.2e-08
 Identities = 23/61 (37%), Positives = 29/61 (47%)

Query:    35 SECNPKCSYRCSATSHKKPXXXXXXXXXXXXXXVPPGTYGNKQVCPCYNNWKTKEGGPKC 94
             S C  KC+ RCS     +               VP GT+G+K  CPCY + K  +GG KC
Sbjct:    27 SSCGGKCNVRCSKAGQHEECLKYCNICCQKCNCVPSGTFGHKDECPCYRDMKNSKGGSKC 86

Query:    95 P 95
             P
Sbjct:    87 P 87

GO:0005576 "extracellular region" evidence=ISM

GO:0009739 "response to gibberellin stimulus" evidence=ISS

TAIR|locus:505006706 AT5G59845 "AT5G59845" [Arabidopsis thaliana (taxid:3702)]

 Score = 122 (48.0 bits), Expect = 8.7e-08, P = 8.7e-08
 Identities = 25/63 (39%), Positives = 30/63 (47%)

Query:    34 SSECNPKCSYRCSATSHK-KPXXXXXXXXXXXXXXVPPGTYGNKQVCPCYNNWKTKEGGP 92
             SS C  KC+ RCS    + +               VP GTYGNK  CPCY + K  +G  
Sbjct:    27 SSPCGGKCNVRCSKAGRQDRCLKYCNICCEKCNYCVPSGTYGNKDECPCYRDMKNSKGTS 86

Query:    93 KCP 95
             KCP
Sbjct:    87 KCP 89

GO:0003674 "molecular_function" evidence=ND

GO:0005576 "extracellular region" evidence=ISM

GO:0009739 "response to gibberellin stimulus" evidence=ISS

TAIR|locus:2147810 GASA14 "AT5G14920" [Arabidopsis thaliana (taxid:3702)]

 Score = 125 (49.1 bits), Expect = 1.3e-07, P = 1.3e-07
 Identities = 26/61 (42%), Positives = 29/61 (47%)

Query:    36 ECNPKCSYRCSATSHKKPXXXXXXXXXXXXXXVPPGTYGNKQVC-PCYNNWKTKEGGPKC 94
             +C P C  RC   S K                VPPGTYGNK+ C  CY N KT+ G  KC
Sbjct:   215 DCVPLCGTRCGQHSRKNVCMRACVTCCYRCKCVPPGTYGNKEKCGSCYANMKTRGGKSKC 274

Query:    95 P 95
             P
Sbjct:   275 P 275

GO:0009739 "response to gibberellin stimulus" evidence=ISS

GO:0005515 "protein binding" evidence=IPI

TAIR|locus:2136897 GASA2 "AT4G09610" [Arabidopsis thaliana (taxid:3702)]

 Score = 115 (45.5 bits), Expect = 4.8e-07, P = 4.8e-07
 Identities = 25/68 (36%), Positives = 32/68 (47%)

Query:    28 GRGKLRSSECNPKCSYRCSATSHKKPXXXXXXXXXXXXXXVPPGTYGNKQVCPCYNNWKT 87
             G G ++  +C  +C  RCS +S  K               VPPGT GN  +CPCY +  T
Sbjct:    33 GEGVVKI-DCGGRCKDRCSKSSRTKLCLRACNSCCSRCNCVPPGTSGNTHLCPCYASITT 91

Query:    88 KEGGPKCP 95
               G  KCP
Sbjct:    92 HGGRLKCP 99

GO:0003674 "molecular_function" evidence=ND

GO:0005576 "extracellular region" evidence=ISM

GO:0009739 "response to gibberellin stimulus" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q6NMQ7	GASA6_ARATH	No assigned EC number	0.5841	1.0	0.9405	yes	no
P47926	RSI1_SOLLC	No assigned EC number	0.6923	0.9263	0.9166	N/A	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: estExt_fgenesh4_pm.C_LG_II1069 hypothetical protein (96 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	95
pfam02704	60	pfam02704, GASA, Gibberellin regulated protein	3e-28

>gnl|CDD|190394 pfam02704, GASA, Gibberellin regulated protein

 Score = 96.2 bits (240), Expect = 3e-28
 Identities = 43/60 (71%), Positives = 47/60 (78%)

Query: 36 ECNPKCSYRCSATSHKKPCMFFCLKCCSKCLCVPPGTYGNKQVCPCYNNWKTKEGGPKCP 95
          +C  KC+ RCS TS KKPC+  C KCC+KCLCVPPGTYGNK  CPCYNNWKT  G PKCP
Sbjct: 1  DCGGKCAVRCSKTSRKKPCLRACGKCCAKCLCVPPGTYGNKDECPCYNNWKTHGGRPKCP 60

This is the GASA gibberellin regulated cysteine rich protein family. The expression of these proteins is up-regulated by the plant hormone gibberellin, most of these proteins have some role in plant development. There are 12 cysteine residues conserved within the alignment giving the potential for these proteins to posses 6 disulphide bonds. Length = 60

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	95
PF02704	60	GASA: Gibberellin regulated protein; InterPro: IPR	100.0
PF07172	95	GRP: Glycine rich protein family; InterPro: IPR010	96.16

>PF02704 GASA: Gibberellin regulated protein; InterPro: IPR003854 This is the GASA gibberellin regulated cysteine rich protein family

Probab=100.00  E-value=9.2e-38  Score=201.37  Aligned_cols=60  Identities=62%  Similarity=1.373  Sum_probs=59.4

Q ss_pred             CChHHhhHHHhcCCCCchHHHHHHHhcccccccCCCCCCCCCCCCcccccccCCCCCCCC
Q 034401           36 ECNPKCSYRCSATSHKKPCMFFCLKCCSKCLCVPPGTYGNKQVCPCYNNWKTKEGGPKCP   95 (95)
Q Consensus        36 ~C~~~C~~RCs~~~~~~~C~~~C~~CC~~C~CVP~GtyGnk~~CPCY~~~~t~~g~pKCP   95 (95)
                      ||+++|++|||+++++++||++||+||++|+|||||||||+|+||||+||+||+|+||||
T Consensus         1 ~C~~~C~~RCs~~~~~~~C~~~C~~CC~~C~CVP~GT~gn~~~CpCY~~m~t~~g~pKCP   60 (60)
T PF02704_consen    1 DCGGACSVRCSKASRKKRCMRACGTCCAKCKCVPPGTYGNKEECPCYRDMKTHGGKPKCP   60 (60)
T ss_pred             CcchHHHHHHhccCCchHHHHHHHHHhccCcccCCCCCCCCccCCChhhhhccCCCCCCc
Confidence            799999999999999999999999999999999999999999999999999999999999

The expression of these proteins is up-regulated by the plant hormone gibberellin, most of these proteins have some role in plant development. There are 12 cysteine residues conserved within the alignment giving the potential for these proteins to posses 6 disulphide bonds.

>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins

Probab=96.16  E-value=0.0067  Score=41.65  Aligned_cols=24  Identities=25%  Similarity=0.335  Sum_probs=11.9

Q ss_pred             CcchhHHHHHHHHHHHHHHHHHHHH
Q 034401            1 MATSRSSILFLVSILLLITLSNVAE   25 (95)
Q Consensus         1 MA~~k~~~ll~~~lll~~~~~~~~~   25 (95)
                      || ||.++||.++|.++|+++..++
T Consensus         1 Ma-SK~~llL~l~LA~lLlisSeva   24 (95)
T PF07172_consen    1 MA-SKAFLLLGLLLAALLLISSEVA   24 (95)
T ss_pred             Cc-hhHHHHHHHHHHHHHHHHhhhh
Confidence            99 8864444443333344443343

Some of them may be involved in resistance to environmental stress [].

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00