Citrus Sinensis ID: 034402

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-----
Protein Sequence
MGESSASYIHMVQHLIEKCLIFRMTKEECMEALSKHANIKPVITSTVWNELEKENKEFFEAYAQSQSKEDRMSEEETNQMIQKMISTNSSKSQND
Secondary Structure (PSIPRED)
ccccHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHcccccHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccc
Secondary Structure Prediction (SSPRO)
ccccHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHcccccHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHccccccccc
Coil and Loop (DISEMBL)
MGESSASYIHMVQHLIEKCLIFRMTKEECMEALSkhanikpviTSTVWNELEKENKEFFEAYAQSqskedrmsEEETNQMIQKMIStnssksqnd
Flexible Loop (DISEMBL)
MGESSASYIHMVQHLIEKCLIFRMTKEECMEALskhanikpviTSTVWNELEKENKEFFEAYAQSQSKEDRMSEEETNQMIQkmistnssksqnd
Low Complexity Region (SEG)
MGESSASYIHMVQHLIEKCLIFRMTKEECMEALSKHANIKPVITSTVWnelekenkeffeAYAQSQSKEDRMSEEETNQMIQKMISTNSSKSQND
Disordered region (IsUnstruct)
*******YIHMVQHLIEKCLIFRMTKEECMEALSKHANIKPVITSTVWNELEK****F*************************************
Disordered Region (DISOPRED)
*****AS**HMVQHLIEKCLIFRMTKEECMEALSKHANIKPVITSTVWNELEKENKEFFEAYAQ*******************************
Disordered Region (DISEMBL)
MGESSASYIHMVQHLIEKCLIFRMTKEECMEALSKHANIKPVITSTVWNELEKENKEFFEAY***************NQMIQKMI**********
Disordered Region (DISPRO)
****SASYIHMVQHLIEKCLIFRMTKEECMEALSKHANIKPVITSTVWNELEKENKEFFEAYAQSQSKEDRMSEEETNQMIQKMIS*********
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhoooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MGESSASYIHMVQHLIEKCLIFRMTKEECMEALSKHANIKPVITSTVWNELEKENKEFFEAYAQSQSKEDRMSEEETNQMIQKMISTNSSKSQND
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	95
255564072	99	conserved hypothetical protein [Ricinus	0.989	0.949	0.852	7e-39
255585984	98	conserved hypothetical protein [Ricinus	0.894	0.867	0.882	2e-38
449522175	95	PREDICTED: uncharacterized LOC101208991	0.905	0.905	0.860	7e-37
357502991	102	Plant-specific domain TIGR01589 family p	0.926	0.862	0.852	1e-36
449466552	95	PREDICTED: uncharacterized protein LOC10	0.905	0.905	0.848	2e-36
225448833	110	PREDICTED: uncharacterized protein LOC10	0.957	0.827	0.793	3e-36
225448835	93	PREDICTED: uncharacterized protein LOC10	0.905	0.924	0.827	7e-35
356574983	98	PREDICTED: uncharacterized protein LOC10	0.905	0.877	0.839	1e-34
15233218	95	uncharacterized protein [Arabidopsis tha	0.957	0.957	0.793	6e-34
225453034	99	PREDICTED: uncharacterized protein LOC10	0.968	0.929	0.731	1e-31

>gi|255564072|ref|XP_002523034.1| conserved hypothetical protein [Ricinus communis] gi|223537717|gb|EEF39338.1| conserved hypothetical protein [Ricinus communis]

 Score =  164 bits (415), Expect = 7e-39,   Method: Compositional matrix adjust.
 Identities = 81/95 (85%), Positives = 87/95 (91%), Gaps = 1/95 (1%)

Query: 1  MGESSASYIHMVQHLIEKCLIFRMTKEECMEALSKHANIKPVITSTVWNELEKENKEFFE 60
          MG+SSASYIHMVQHLIEKCLIF MTKEECMEALSKHANI PVITSTVWNELEKENKEFFE
Sbjct: 1  MGDSSASYIHMVQHLIEKCLIFHMTKEECMEALSKHANITPVITSTVWNELEKENKEFFE 60

Query: 61 AYAQSQSKEDRMSEEETNQMIQKMISTNSSKSQND 95
          AY +S+ K+DRMSEEET+QMIQKMIS  SSK  +D
Sbjct: 61 AYIESKRKDDRMSEEETSQMIQKMIS-ESSKDSDD 94

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255585984|ref|XP_002533662.1| conserved hypothetical protein [Ricinus communis] gi|223526444|gb|EEF28721.1| conserved hypothetical protein [Ricinus communis]

 Score =  162 bits (410), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 75/85 (88%), Positives = 81/85 (95%)

Query: 1  MGESSASYIHMVQHLIEKCLIFRMTKEECMEALSKHANIKPVITSTVWNELEKENKEFFE 60
          MG+SSASYI MVQHLIE+CLIFRMTKEECMEALSKHANI PVITSTVWNELEKENKEFFE
Sbjct: 1  MGDSSASYIRMVQHLIERCLIFRMTKEECMEALSKHANITPVITSTVWNELEKENKEFFE 60

Query: 61 AYAQSQSKEDRMSEEETNQMIQKMI 85
           YAQS+SK+DRMS+EET QMIQKM+
Sbjct: 61 VYAQSKSKDDRMSDEETTQMIQKMV 85

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449522175|ref|XP_004168103.1| PREDICTED: uncharacterized LOC101208991 [Cucumis sativus]

 Score =  157 bits (397), Expect = 7e-37,   Method: Compositional matrix adjust.
 Identities = 74/86 (86%), Positives = 81/86 (94%)

Query: 1  MGESSASYIHMVQHLIEKCLIFRMTKEECMEALSKHANIKPVITSTVWNELEKENKEFFE 60
          M +SS+SYIHMVQHLIEKCLIF MTKEECM+ALSKHA+IKP+ITSTVWNELEKENKEFFE
Sbjct: 1  MADSSSSYIHMVQHLIEKCLIFHMTKEECMDALSKHADIKPIITSTVWNELEKENKEFFE 60

Query: 61 AYAQSQSKEDRMSEEETNQMIQKMIS 86
          AYAQS +  DRMSEEET+QMIQKMIS
Sbjct: 61 AYAQSHNNSDRMSEEETSQMIQKMIS 86

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357502991|ref|XP_003621784.1| Plant-specific domain TIGR01589 family protein [Medicago truncatula] gi|355496799|gb|AES78002.1| Plant-specific domain TIGR01589 family protein [Medicago truncatula]

 Score =  156 bits (395), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 75/88 (85%), Positives = 82/88 (93%)

Query: 8   YIHMVQHLIEKCLIFRMTKEECMEALSKHANIKPVITSTVWNELEKENKEFFEAYAQSQS 67
           YIHMVQHLIEKCLIF MTKEECMEALSKHANIKPVITSTVW ELEKENKEFFEAYA+S+S
Sbjct: 15  YIHMVQHLIEKCLIFHMTKEECMEALSKHANIKPVITSTVWKELEKENKEFFEAYAKSKS 74

Query: 68  KEDRMSEEETNQMIQKMISTNSSKSQND 95
           K++RMSEEETNQM+QK+IS +S  S ND
Sbjct: 75  KDERMSEEETNQMLQKIISDSSKGSTND 102

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449466552|ref|XP_004150990.1| PREDICTED: uncharacterized protein LOC101208991 [Cucumis sativus]

 Score =  156 bits (394), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 73/86 (84%), Positives = 81/86 (94%)

Query: 1  MGESSASYIHMVQHLIEKCLIFRMTKEECMEALSKHANIKPVITSTVWNELEKENKEFFE 60
          M +SS+SY+HMVQHLIEKCLIF MTKEECM+ALSKHA+IKP+ITSTVWNELEKENKEFFE
Sbjct: 1  MADSSSSYMHMVQHLIEKCLIFHMTKEECMDALSKHADIKPIITSTVWNELEKENKEFFE 60

Query: 61 AYAQSQSKEDRMSEEETNQMIQKMIS 86
          AYAQS +  DRMSEEET+QMIQKMIS
Sbjct: 61 AYAQSHNNSDRMSEEETSQMIQKMIS 86

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225448833|ref|XP_002282451.1| PREDICTED: uncharacterized protein LOC100244913 [Vitis vinifera] gi|296086934|emb|CBI33167.3| unnamed protein product [Vitis vinifera]

 Score =  155 bits (392), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 73/92 (79%), Positives = 85/92 (92%), Gaps = 1/92 (1%)

Query: 1  MGESSASYIHMVQHLIEKCLIFRMTKEECMEALSKHANIKPVITSTVWNELEKENKEFFE 60
          MG+SSASYIHMVQHLIE CLIF M+KEECMEALSKHANI+PVITSTVWNELEKENKEFFE
Sbjct: 1  MGDSSASYIHMVQHLIENCLIFHMSKEECMEALSKHANIEPVITSTVWNELEKENKEFFE 60

Query: 61 AY-AQSQSKEDRMSEEETNQMIQKMISTNSSK 91
           Y  Q+Q+K+DR+SE ET+++IQKMIS ++SK
Sbjct: 61 GYNTQTQTKDDRLSEAETDELIQKMISDSTSK 92

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225448835|ref|XP_002282487.1| PREDICTED: uncharacterized protein LOC100267224 [Vitis vinifera] gi|296086933|emb|CBI33166.3| unnamed protein product [Vitis vinifera]

 Score =  150 bits (380), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 72/87 (82%), Positives = 81/87 (93%), Gaps = 1/87 (1%)

Query: 1  MGESSASYIHMVQHLIEKCLIFRMTKEECMEALSKHANIKPVITSTVWNELEKENKEFFE 60
          MG+SSASYIHMVQHLIEKCLIF M+KEECMEALSKHA+I  VITSTVWNELEKENKEFFE
Sbjct: 1  MGDSSASYIHMVQHLIEKCLIFHMSKEECMEALSKHADINQVITSTVWNELEKENKEFFE 60

Query: 61 AY-AQSQSKEDRMSEEETNQMIQKMIS 86
          AY  Q+Q+++DRMSE ETN+MIQKMI+
Sbjct: 61 AYHTQTQTRDDRMSEAETNEMIQKMIA 87

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356574983|ref|XP_003555622.1| PREDICTED: uncharacterized protein LOC100800093 [Glycine max]

 Score =  150 bits (378), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 73/87 (83%), Positives = 82/87 (94%), Gaps = 1/87 (1%)

Query: 6  ASYIHMVQHLIEKCLIFRMTKEECMEALSKHANIKPVITSTVWNELEKENKEFFEAYAQS 65
          ASYIHMVQHLIEKCLIF MTKEECMEALSKHANI P+ITSTVW ELEKENKEFFEAY +S
Sbjct: 11 ASYIHMVQHLIEKCLIFHMTKEECMEALSKHANINPIITSTVWKELEKENKEFFEAYMKS 70

Query: 66 QSKEDRMSEEETNQMIQKMIS-TNSSK 91
          ++K+DRMS+EETNQ+IQKMIS ++SSK
Sbjct: 71 KAKDDRMSQEETNQIIQKMISESDSSK 97

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15233218|ref|NP_191084.1| uncharacterized protein [Arabidopsis thaliana] gi|297820286|ref|XP_002878026.1| hypothetical protein ARALYDRAFT_485945 [Arabidopsis lyrata subsp. lyrata] gi|7019657|emb|CAB75758.1| putative protein [Arabidopsis thaliana] gi|19310583|gb|AAL85022.1| unknown protein [Arabidopsis thaliana] gi|24030411|gb|AAN41364.1| unknown protein [Arabidopsis thaliana] gi|297323864|gb|EFH54285.1| hypothetical protein ARALYDRAFT_485945 [Arabidopsis lyrata subsp. lyrata] gi|332645835|gb|AEE79356.1| uncharacterized protein [Arabidopsis thaliana]

 Score =  147 bits (372), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 73/92 (79%), Positives = 84/92 (91%), Gaps = 1/92 (1%)

Query: 4  SSASYIHMVQHLIEKCLIFRMTKEECMEALSKHANIKPVITSTVWNELEKENKEFFEAYA 63
          SSASYIHMVQH+IEKCLIF M+KEEC+EALSKHANI PVITSTVW ELEKENKEFF+AY 
Sbjct: 5  SSASYIHMVQHMIEKCLIFHMSKEECVEALSKHANITPVITSTVWKELEKENKEFFKAYE 64

Query: 64 QSQSKEDRMSEEETNQMIQKMISTNSSKSQND 95
          + QSK+++MSEEETNQMIQK+IS +SSK  +D
Sbjct: 65 ERQSKQEQMSEEETNQMIQKIIS-DSSKESDD 95

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225453034|ref|XP_002265038.1| PREDICTED: uncharacterized protein LOC100245098 [Vitis vinifera] gi|302143639|emb|CBI22392.3| unnamed protein product [Vitis vinifera]

 Score =  140 bits (352), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 71/97 (73%), Positives = 84/97 (86%), Gaps = 5/97 (5%)

Query: 1  MGESSAS---YIHMVQHLIEKCLIFRMTKEECMEALSKHANIKPVITSTVWNELEKENKE 57
          MG+SSAS   YIHMVQHLIEKCLIF MTKE+CMEALSKHA+I+PVITSTVWNELEKENKE
Sbjct: 1  MGDSSASSASYIHMVQHLIEKCLIFHMTKEQCMEALSKHADIQPVITSTVWNELEKENKE 60

Query: 58 FFEA-YAQSQSK-EDRMSEEETNQMIQKMISTNSSKS 92
          FFE  Y Q++++ +D+MSE ET +MIQKMI+ +S  S
Sbjct: 61 FFEVYYTQTRTRDDDQMSETETTEMIQKMITKSSKHS 97

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	95
TAIR|locus:2100676	95	AT3G55240 "AT3G55240" [Arabido	0.957	0.957	0.684	6.4e-28
TAIR|locus:2086992	88	AT3G28990 "AT3G28990" [Arabido	0.873	0.943	0.578	8e-21
TAIR|locus:2181838	91	AT5G02580 "AT5G02580" [Arabido	0.852	0.890	0.506	1.6e-17
TAIR|locus:4010713425	125	AT1G10657 "AT1G10657" [Arabido	0.442	0.336	0.571	4.1e-10
TAIR|locus:2076299	324	AT3G10250 "AT3G10250" [Arabido	0.894	0.262	0.304	0.00061
TAIR|locus:2146728	305	AT5G04090 "AT5G04090" [Arabido	0.789	0.245	0.303	0.00091

TAIR|locus:2100676 AT3G55240 "AT3G55240" [Arabidopsis thaliana (taxid:3702)]

 Score = 312 (114.9 bits), Expect = 6.4e-28, P = 6.4e-28
 Identities = 63/92 (68%), Positives = 73/92 (79%)

Query:     4 SSASYIHMVQHLIEKCLIFRMTKEECMEALSKHANIKPVITSTVWXXXXXXXXXXXXAYA 63
             SSASYIHMVQH+IEKCLIF M+KEEC+EALSKHANI PVITSTVW            AY 
Sbjct:     5 SSASYIHMVQHMIEKCLIFHMSKEECVEALSKHANITPVITSTVWKELEKENKEFFKAYE 64

Query:    64 QSQSKEDRMSEEETNQMIQKMISTNSSKSQND 95
             + QSK+++MSEEETNQMIQK+IS +SSK  +D
Sbjct:    65 ERQSKQEQMSEEETNQMIQKIIS-DSSKESDD 95

GO:0003674 "molecular_function" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

GO:0032502 "developmental process" evidence=IMP

TAIR|locus:2086992 AT3G28990 "AT3G28990" [Arabidopsis thaliana (taxid:3702)]

 Score = 245 (91.3 bits), Expect = 8.0e-21, P = 8.0e-21
 Identities = 48/83 (57%), Positives = 58/83 (69%)

Query:     4 SSASYIHMVQHLIEKCLIFRMTKEECMEALSKHANIKPVITSTVWXXXXXXXXXXXXAYA 63
             S A YIH+VQH+IE CL F M+KEECMEALS++ANI P+ITSTVW             Y 
Sbjct:     5 SPAVYIHLVQHMIETCLTFNMSKEECMEALSENANINPIITSTVWKELVKENKDFFETYE 64

Query:    64 QSQSKEDRMSEEETNQMIQKMIS 86
             Q   K++ MSEEETNQ+IQ +IS
Sbjct:    65 QKLMKKESMSEEETNQLIQNIIS 87

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

TAIR|locus:2181838 AT5G02580 "AT5G02580" [Arabidopsis thaliana (taxid:3702)]

 Score = 214 (80.4 bits), Expect = 1.6e-17, P = 1.6e-17
 Identities = 42/83 (50%), Positives = 57/83 (68%)

Query:     4 SSASYIHMVQHLIEKCLIFRMTKEECMEALSKHANIKPVITSTVWXXXXXXXXXXXXAYA 63
             S ASYIH+V HLIE+C++F M KEECM+AL KHANIKP+ITSTVW            AY 
Sbjct:     7 SQASYIHLVHHLIEECIVFNMGKEECMDALFKHANIKPIITSTVWKELAKENKEFFEAY- 65

Query:    64 QSQSKEDRMSEEETNQMIQKMIS 86
               + +E+  +E+ET + I+ ++S
Sbjct:    66 -ERRREEIPTEKETARRIRDLLS 87

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0006635 "fatty acid beta-oxidation" evidence=RCA

GO:0009062 "fatty acid catabolic process" evidence=RCA

TAIR|locus:4010713425 AT1G10657 "AT1G10657" [Arabidopsis thaliana (taxid:3702)]

 Score = 144 (55.7 bits), Expect = 4.1e-10, P = 4.1e-10
 Identities = 24/42 (57%), Positives = 36/42 (85%)

Query:     7 SYIHMVQHLIEKCLIFRMTKEECMEALSKHANIKPVITSTVW 48
             SYI MVQH+IE+C++ RMT++EC++AL  HA+I P++T TV+
Sbjct:    22 SYIRMVQHMIERCILLRMTRDECVKALDHHASILPLVTLTVF 63

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2076299 AT3G10250 "AT3G10250" [Arabidopsis thaliana (taxid:3702)]

 Score = 93 (37.8 bits), Expect = 0.00061, P = 0.00061
 Identities = 28/92 (30%), Positives = 45/92 (48%)

Query:     9 IHMVQHLIEKCLIFRMTKEECMEALSKHANIKPVITSTVWXXXXXXXXXXXXAY-----A 63
             I +VQ+LIE+CL   M ++E ++ L + A I+P  T  VW            AY      
Sbjct:    14 IQLVQNLIERCLQLYMNQKEVVDTLLEQAKIEPGFTELVWQKLEEENREFFKAYYLRLMV 73

Query:    64 QSQSKE-DRMSEEETNQMIQKMISTNSSKSQN 94
             + Q  E +++ E++ + M Q M  T  +  QN
Sbjct:    74 KHQIMEFNKLLEQQVHHMRQ-MHPTGVASVQN 104

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2146728 AT5G04090 "AT5G04090" [Arabidopsis thaliana (taxid:3702)]

 Score = 91 (37.1 bits), Expect = 0.00091, P = 0.00091
 Identities = 24/79 (30%), Positives = 40/79 (50%)

Query:     9 IHMVQHLIEKCLIFRMTKEECMEALSKHANIKPVITSTVWXXXXXXXXXXXXAY-AQSQS 67
             I +VQ+LIE+CL   M ++E ++ L + A I+P  T  VW            AY  +   
Sbjct:    14 IQLVQNLIERCLQLYMNQKEVVDTLLEQAKIEPGFTELVWQKLEEENREFFKAYYLRLMV 73

Query:    68 KEDRMSEEETNQMIQKMIS 86
             K   M   E N+++++ I+
Sbjct:    74 KHQIM---EYNELLEQQIN 89


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.310   0.118   0.319    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0       95        83   0.00091  102 3  10 23  0.44    29
                                                     29  0.44    30


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  6
  No. of states in DFA:  576 (61 KB)
  Total size of DFA:  137 KB (2085 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  13.19u 0.25s 13.44t   Elapsed:  00:00:01
  Total cpu time:  13.19u 0.25s 13.44t   Elapsed:  00:00:01
  Start:  Thu May  9 13:48:28 2013   End:  Thu May  9 13:48:29 2013

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00029529001 SubName- Full=Chromosome chr13 scaffold_48, whole genome shotgun sequence; (110 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	95
pfam09713	54	pfam09713, A_thal_3526, Plant protein 1589 of unkn	8e-25
TIGR01589	57	TIGR01589, A_thal_3526, uncharacterized plant-spec	2e-18

>gnl|CDD|192339 pfam09713, A_thal_3526, Plant protein 1589 of unknown function (A_thal_3526)

 Score = 87.4 bits (217), Expect = 8e-25
 Identities = 34/51 (66%), Positives = 40/51 (78%)

Query: 12 VQHLIEKCLIFRMTKEECMEALSKHANIKPVITSTVWNELEKENKEFFEAY 62
          VQ+LIE+C+   M+KEEC+ AL KHANI P  TSTVW +LEKEN EFF AY
Sbjct: 1  VQNLIERCIQLYMSKEECVNALQKHANISPKFTSTVWKQLEKENPEFFRAY 51

This plant-specific family of proteins is defined by an uncharacterized region 57 residues in length. It is found toward the N terminus of most proteins that contain it. Examples include at least several proteins from Arabidopsis thaliana and Oryza sativa. The function of the proteins are unknown. Length = 54

>gnl|CDD|130650 TIGR01589, A_thal_3526, uncharacterized plant-specific domain TIGR01589

 Score = 71.4 bits (175), Expect = 2e-18
 Identities = 25/56 (44%), Positives = 33/56 (58%)

Query: 9  IHMVQHLIEKCLIFRMTKEECMEALSKHANIKPVITSTVWNELEKENKEFFEAYAQ 64
          I +VQ+ IE C+   M+KEE +  L ++A I P  T  VW  LEKEN +FF  Y  
Sbjct: 1  IDLVQNRIETCIQGYMSKEETVSFLFENAGISPKFTRFVWYLLEKENADFFRCYKT 56

This model represents an uncharacterized plant-specific domain 57 residues in length. It is found toward the N-terminus of most proteins that contain it. Examples include at least 10 proteins from Arabidopsis thaliana and at least one from Oryza sativa. Length = 57

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	95
TIGR01589	57	A_thal_3526 uncharacterized plant-specific domain	100.0
PF09713	54	A_thal_3526: Plant protein 1589 of unknown functio	100.0
PF08986	119	DUF1889: Domain of unknown function (DUF1889); Int	91.83
PF13565	77	HTH_32: Homeodomain-like domain	81.86
smart00411	90	BHL bacterial (prokaryotic) histone like domain.	80.74

>TIGR01589 A_thal_3526 uncharacterized plant-specific domain TIGR01589

Probab=100.00  E-value=1.3e-36  Score=194.11  Aligned_cols=56  Identities=45%  Similarity=0.681  Sum_probs=54.6

Q ss_pred             HHHHHHHHHHHHHhhCCHHHHHHHHHhhcCCCchhHHHHHHHHHHhcHHHHHHHHH
Q 034402            9 IHMVQHLIEKCLIFRMTKEECMEALSKHANIKPVITSTVWNELEKENKEFFEAYAQ   64 (95)
Q Consensus         9 I~~VQ~LIErCLqlyMsk~E~v~~L~~~a~I~P~fT~~VW~~LE~eN~eFFkaY~~   64 (95)
                      |++|||||||||++|||++|||++|++||||+|+||++||++||+||||||+||+.
T Consensus         1 i~~Vq~lIE~Cl~~yMsk~E~v~~L~~~a~I~P~~T~~VW~~LekeN~eFF~aY~~   56 (57)
T TIGR01589         1 IDLVQNRIETCIQGYMSKEETVSFLFENAGISPKFTRFVWYLLEKENADFFRCYKT   56 (57)
T ss_pred             CHHHHHHHHHHHHHHCCHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHHHHHHhc
Confidence            68999999999999999999999999999999999999999999999999999964

This model represents an uncharacterized plant-specific domain 57 residues in length. It is found toward the N-terminus of most proteins that contain it. Examples include at least 10 proteins from Arabidopsis thaliana and at least one from Oryza sativa.

>PF09713 A_thal_3526: Plant protein 1589 of unknown function (A_thal_3526); InterPro: IPR006476 This plant-specific family of proteins are defined by an uncharacterised region 57 residues in length

Probab=100.00  E-value=1.1e-35  Score=187.90  Aligned_cols=53  Identities=66%  Similarity=1.072  Sum_probs=51.8

Q ss_pred             HHHHHHHHHHhhCCHHHHHHHHHhhcCCCchhHHHHHHHHHHhcHHHHHHHHH
Q 034402           12 VQHLIEKCLIFRMTKEECMEALSKHANIKPVITSTVWNELEKENKEFFEAYAQ   64 (95)
Q Consensus        12 VQ~LIErCLqlyMsk~E~v~~L~~~a~I~P~fT~~VW~~LE~eN~eFFkaY~~   64 (95)
                      ||+||||||++|||++|||++|++||||+|+||++||++||+||||||+||+.
T Consensus         1 Vq~lIErCl~~yMsk~E~v~~L~~~a~I~P~~T~~VW~~Le~eN~eFF~aY~~   53 (54)
T PF09713_consen    1 VQNLIERCLQLYMSKEECVRALQKQANIEPVFTSTVWQKLEKENPEFFKAYYT   53 (54)
T ss_pred             CchHHHHHHHHcCCHHHHHHHHHHHcCCChHHHHHHHHHHHHHCHHHHHHhhc
Confidence            79999999999999999999999999999999999999999999999999965

It is found toward the N terminus of most proteins that contain it. Examples include at least several proteins from Arabidopsis thaliana (Mouse-ear cress) and Oryza sativa (Rice). The function of the proteins are unknown.

>PF08986 DUF1889: Domain of unknown function (DUF1889); InterPro: IPR015079 This family consist of hypothetical bacterial proteins

Probab=91.83  E-value=0.21  Score=36.04  Aligned_cols=40  Identities=28%  Similarity=0.393  Sum_probs=26.5

Q ss_pred             HHHHHhhcCCCchhHHHHHHHHHH---------hcHHHHHHHHHhhhHH
Q 034402           30 MEALSKHANIKPVITSTVWNELEK---------ENKEFFEAYAQSQSKE   69 (95)
Q Consensus        30 v~~L~~~a~I~P~fT~~VW~~LE~---------eN~eFFkaY~~~~lk~   69 (95)
                      |.+=-++-|-+|+||..|-.--++         .|||||..|.|-+||.
T Consensus        69 v~aRg~qeGWn~gFT~k~agwaeki~sG~rivIKnPEyFs~YMreqLra  117 (119)
T PF08986_consen   69 VTARGEQEGWNPGFTEKVAGWAEKIASGERIVIKNPEYFSSYMREQLRA  117 (119)
T ss_dssp             HHHHHHHCT--HHHHHHHHHHHHHHHCT-----SSGGGS-HHHHHHHHH
T ss_pred             HHHhcccccCChhHHHHHHHHHHHHhcCCeeeecChHHHHHHHHHHHHH
Confidence            444456779999999987333333         7999999998876663

; PDB: 2JN8_A 2ES9_A.

>PF13565 HTH_32: Homeodomain-like domain

Probab=81.86  E-value=4.9  Score=24.54  Aligned_cols=43  Identities=28%  Similarity=0.201  Sum_probs=29.3

Q ss_pred             HHHHHHHHHHHHHh-hCCHHHHHHHHHhhcCCCc-hhHHHHHHHH
Q 034402            9 IHMVQHLIEKCLIF-RMTKEECMEALSKHANIKP-VITSTVWNEL   51 (95)
Q Consensus         9 I~~VQ~LIErCLql-yMsk~E~v~~L~~~a~I~P-~fT~~VW~~L   51 (95)
                      -.+.+.+++-.... .+|..++...|..++||.. .=-++||+-|
T Consensus        33 ~e~~~~i~~~~~~~p~wt~~~i~~~L~~~~g~~~~~S~~tv~R~L   77 (77)
T PF13565_consen   33 PEQRERIIALIEEHPRWTPREIAEYLEEEFGISVRVSRSTVYRIL   77 (77)
T ss_pred             HHHHHHHHHHHHhCCCCCHHHHHHHHHHHhCCCCCccHhHHHHhC
Confidence            34445555544444 7999999999999999864 3345777643

>smart00411 BHL bacterial (prokaryotic) histone like domain

Probab=80.74  E-value=3.7  Score=26.03  Aligned_cols=30  Identities=20%  Similarity=0.297  Sum_probs=26.6

Q ss_pred             CCHHHHHHHHHhhcCCCchhHHHHHHHHHH
Q 034402           24 MTKEECMEALSKHANIKPVITSTVWNELEK   53 (95)
Q Consensus        24 Msk~E~v~~L~~~a~I~P~fT~~VW~~LE~   53 (95)
                      ||++|+++.++++.++.+.-...|++.|.+
T Consensus         1 mtk~eli~~ia~~~~~~~~~v~~vl~~l~~   30 (90)
T smart00411        1 MTKSELIDAIAEKAGLSKKDAKAAVDAFLE   30 (90)
T ss_pred             CCHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence            899999999999999999888888877654

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	95
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-04

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 37.5 bits (86), Expect = 2e-04
 Identities = 14/71 (19%), Positives = 28/71 (39%), Gaps = 5/71 (7%)

Query: 12  VQHLIEKCLIFRMTKE--ECMEALS---KHANIKPVITSTVWNELEKENKEFFEAYAQSQ 66
           +  +IE  L      E  +  + LS     A+I  ++ S +W ++ K +           
Sbjct: 355 LTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKY 414

Query: 67  SKEDRMSEEET 77
           S  ++  +E T
Sbjct: 415 SLVEKQPKEST 425

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	95
2es9_A	115	Putative cytoplasmic protein; structural genomics,	91.91
2di0_A	71	Activating signal cointegrator 1 complex subunit 2	81.71

>2es9_A Putative cytoplasmic protein; structural genomics, PSI, protein structure initiative, NORT structural genomics consortium, NESG; 2.00A {Salmonella typhimurium} SCOP: a.247.1.1 PDB: 2jn8_A

Probab=91.91  E-value=0.11  Score=36.30  Aligned_cols=41  Identities=34%  Similarity=0.540  Sum_probs=30.4

Q ss_pred             HHHHHHhhcCCCchhHHHH--HHHHHH-------hcHHHHHHHHHhhhHH
Q 034402           29 CMEALSKHANIKPVITSTV--WNELEK-------ENKEFFEAYAQSQSKE   69 (95)
Q Consensus        29 ~v~~L~~~a~I~P~fT~~V--W~~LE~-------eN~eFFkaY~~~~lk~   69 (95)
                      -|.+=-.+-|-+|+||..|  |.+=-+       .|||||..|.+-.||.
T Consensus        56 dv~aRg~qegWn~gFT~k~~gWAek~esGer~vIKnPEyFstYM~eeLka  105 (115)
T 2es9_A           56 VVVARGEQEGWNPEFTKKVAGWAEKVASGNRILIKNPEYFSTYMQEQLKE  105 (115)
T ss_dssp             HHHHHHHHTTCCHHHHHHHHHHHHHHHTTCCCCCSSGGGSCHHHHHHHHH
T ss_pred             HHHHhcccccCChhHHHHHHHHHHHhccCCeeeecChHHHHHHHHHHHHH
Confidence            3444456779999999987  544332       7999999998877764

>2di0_A Activating signal cointegrator 1 complex subunit 2; ASCC2, CUE domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.4

Probab=81.71  E-value=3  Score=26.77  Aligned_cols=38  Identities=24%  Similarity=0.487  Sum_probs=30.7

Q ss_pred             HHHHHHHHHH--------HHHHHHhh-CCHHHHHHHHHhhcCCCchhH
Q 034402            6 ASYIHMVQHL--------IEKCLIFR-MTKEECMEALSKHANIKPVIT   44 (95)
Q Consensus         6 ~~~I~~VQ~L--------IErCLqly-Msk~E~v~~L~~~a~I~P~fT   44 (95)
                      .+.|..|+.|        |.+||..| -|-|.||.+|.+. ++.|...
T Consensus        14 ~s~I~qV~DLfPdLG~gfi~~~L~~y~~nvE~vin~LLE~-~LPp~L~   60 (71)
T 2di0_A           14 DSLISQVKDLLPDLGEGFILACLEYYHYDPEQVINNILEE-RLAPTLS   60 (71)
T ss_dssp             HHHHHHHHHHCCSSCHHHHHHHHHHTTTCHHHHHHHHHTT-CCCTTTT
T ss_pred             HHHHHHHHHHcccCCHHHHHHHHHHhCCCHHHHHHHHHcc-CCCHHHH
Confidence            3567777765        89999999 8999999999985 7777653

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	95
d2es9a1	97	Hypothetical protein YoaC {Salmonella typhimurium	92.2
d2q0ta1	257	Hypothetical protein Bxeno_B2006 {Burkholderia xen	85.48
d1b8za_	90	HU protein {Thermotoga maritima [TaxId: 2336]}	82.45
d1mula_	90	HU protein {Escherichia coli [TaxId: 562]}	80.78
d1exea_	99	Transcription factor 1, TF1 {Bacteriophage SPO1 [T	80.77

>d2es9a1 a.247.1.1 (A:11-107) Hypothetical protein YoaC {Salmonella typhimurium [TaxId: 90371]}

class: All alpha proteins
fold: YoaC-like
superfamily: YoaC-like
family: YoaC-like
domain: Hypothetical protein YoaC
species: Salmonella typhimurium [TaxId: 90371]

Probab=92.20  E-value=0.047  Score=35.61  Aligned_cols=44  Identities=34%  Similarity=0.523  Sum_probs=31.1

Q ss_pred             CHHHHHHHHHhhcCCCchhHHHH--HHHHHH-------hcHHHHHHHHHhhhHH
Q 034402           25 TKEECMEALSKHANIKPVITSTV--WNELEK-------ENKEFFEAYAQSQSKE   69 (95)
Q Consensus        25 sk~E~v~~L~~~a~I~P~fT~~V--W~~LE~-------eN~eFFkaY~~~~lk~   69 (95)
                      |.++ |.+=-.+-|-+|+||.-|  |.+--+       .|||||..|.+-.||.
T Consensus        43 s~~d-v~aRg~qegWn~gFT~K~~gWA~k~~sGerivIKnPEyFstYM~eeLka   95 (97)
T d2es9a1          43 SPEV-VVARGEQEGWNPEFTKKVAGWAEKVASGNRILIKNPEYFSTYMQEQLKE   95 (97)
T ss_dssp             CHHH-HHHHHHHTTCCHHHHHHHHHHHHHHHTTCCCCCSSGGGSCHHHHHHHHH
T ss_pred             CHHH-HHHhcccccCChhHHHHHHHHHHHhccCCeeeecChHHHHHHHHHHHHh
Confidence            3344 444456779999999987  543322       7999999998877663

>d2q0ta1 a.152.1.1 (A:1-257) Hypothetical protein Bxeno_B2006 {Burkholderia xenovorans [TaxId: 36873]}

class: All alpha proteins
fold: AhpD-like
superfamily: AhpD-like
family: AhpD
domain: Hypothetical protein Bxeno B2006
species: Burkholderia xenovorans [TaxId: 36873]

Probab=85.48  E-value=1.6  Score=30.68  Aligned_cols=75  Identities=21%  Similarity=0.325  Sum_probs=49.3

Q ss_pred             HHHHHHHHHHHhhCCHHHHHHHHHh---------------------hcCCCc--------------------hhHHHHHH
Q 034402           11 MVQHLIEKCLIFRMTKEECMEALSK---------------------HANIKP--------------------VITSTVWN   49 (95)
Q Consensus        11 ~VQ~LIErCLqlyMsk~E~v~~L~~---------------------~a~I~P--------------------~fT~~VW~   49 (95)
                      .+..-+..++..-.|++|+.+.|+-                     ..||.+                    .+....|+
T Consensus        78 ~~~~h~~~al~~G~t~~ei~E~l~~~~~~G~~~~~~~~~~~~ev~~e~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~  157 (257)
T d2q0ta1          78 GVARHIERALSFGATREELIEVLELVSTIGIHTSNVGVPVLLEVLEEEGLRKGAPPLDERRQKLKAEFETNRGYWHPTWE  157 (257)
T ss_dssp             HHHHHHHHHHHTTCCHHHHHHHHHHHGGGGGHHHHHHHHHHHHHHHHTTSCCSCCCCCHHHHHHHHHHHHHHSCCCHHHH
T ss_pred             HHHHHHHHHHHcCCCHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHcCCCCCCCCCcchhhHHHHHHHHHhccccHHHH
Confidence            4677788999999999999988632                     122322                    34457899


Q ss_pred             HHHHhcHHHHHHHHHhh--hHHhhhhHHHHHHHHHHHH
Q 034402           50 ELEKENKEFFEAYAQSQ--SKEDRMSEEETNQMIQKMI   85 (95)
Q Consensus        50 ~LE~eN~eFFkaY~~~~--lk~qi~s~~~~~~~iq~~~   85 (95)
                      .|-+..|+||++|....  .-..=.-...+.++|---+
T Consensus       158 ~~~~~~P~~~~~~~~~~~~~~~~~~L~~k~reLi~la~  195 (257)
T d2q0ta1         158 GLLELDPDLFEAYVEFSSVPWRTGVLSPKIKEFMYCAF  195 (257)
T ss_dssp             HHHHHCHHHHHHHHHHHHHHHHHCCSCHHHHHHHHHHH
T ss_pred             HHHhcCHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHH
Confidence            99999999999994431  1111113445677775443

>d1b8za_ a.55.1.1 (A:) HU protein {Thermotoga maritima [TaxId: 2336]}

class: All alpha proteins
fold: IHF-like DNA-binding proteins
superfamily: IHF-like DNA-binding proteins
family: Prokaryotic DNA-bending protein
domain: HU protein
species: Thermotoga maritima [TaxId: 2336]

Probab=82.45  E-value=0.82  Score=27.53  Aligned_cols=28  Identities=21%  Similarity=0.332  Sum_probs=24.1

Q ss_pred             CCHHHHHHHHHhhcCCCchhHHHHHHHH
Q 034402           24 MTKEECMEALSKHANIKPVITSTVWNEL   51 (95)
Q Consensus        24 Msk~E~v~~L~~~a~I~P~fT~~VW~~L   51 (95)
                      |||.|+++.|+++.|+...-...+++.+
T Consensus         1 MnK~eli~~ia~~~~~s~~~~~~~~~~~   28 (90)
T d1b8za_           1 MNKKELIDRVAKKAGAKKKDVKLILDTI   28 (90)
T ss_dssp             CCHHHHHHHHHHHHTCCHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHhhCCCHHHHHHHHHHH
Confidence            9999999999999999888777776644

>d1mula_ a.55.1.1 (A:) HU protein {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: IHF-like DNA-binding proteins
superfamily: IHF-like DNA-binding proteins
family: Prokaryotic DNA-bending protein
domain: HU protein
species: Escherichia coli [TaxId: 562]

Probab=80.78  E-value=1.1  Score=26.99  Aligned_cols=27  Identities=11%  Similarity=0.305  Sum_probs=21.8

Q ss_pred             CCHHHHHHHHHhhcCCCchhHHHHHHH
Q 034402           24 MTKEECMEALSKHANIKPVITSTVWNE   50 (95)
Q Consensus        24 Msk~E~v~~L~~~a~I~P~fT~~VW~~   50 (95)
                      ||+.|++++|+++.|+...-...+-+.
T Consensus         1 M~K~eli~~ia~~~~ltk~~~~~~v~~   27 (90)
T d1mula_           1 MNKTQLIDVIAEKAELSKTQAKAALES   27 (90)
T ss_dssp             CCHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHhhCcCHHHHHHHHHH
Confidence            999999999999999887665555443

>d1exea_ a.55.1.1 (A:) Transcription factor 1, TF1 {Bacteriophage SPO1 [TaxId: 10685]}

class: All alpha proteins
fold: IHF-like DNA-binding proteins
superfamily: IHF-like DNA-binding proteins
family: Prokaryotic DNA-bending protein
domain: Transcription factor 1, TF1
species: Bacteriophage SPO1 [TaxId: 10685]

Probab=80.77  E-value=0.61  Score=28.82  Aligned_cols=29  Identities=24%  Similarity=0.414  Sum_probs=26.2

Q ss_pred             CCHHHHHHHHHhhcCCCchhHHHHHHHHH
Q 034402           24 MTKEECMEALSKHANIKPVITSTVWNELE   52 (95)
Q Consensus        24 Msk~E~v~~L~~~a~I~P~fT~~VW~~LE   52 (95)
                      |||.|+++.|+++.|+.+.-...|++.+.
T Consensus         1 M~K~eli~~ia~~~~ls~~~~~~~~~~~~   29 (99)
T d1exea_           1 MNKTELIKAIAQDTGLTQVSVSKMLASFE   29 (99)
T ss_dssp             CCTTHHHHHHHHHHCSCCTTHHHHHHHHH
T ss_pred             CCHHHHHHHHHHhhCCCHHHHHHHHHHHH
Confidence            89999999999999999999988887654