Citrus Sinensis ID: 034421

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-----
Protein Sequence
MCAELNQSYTMAQDFFNAHDITPLQWGNDQMQLCYNCDSCKAGLLANLKKEWRRVDIILIVTLVALILVYLIGCCAFRNDKTEDLFRKYKQGTYT
Secondary Structure (PSIPRED)
ccccccccEEEccccccccccccccccccccccEEcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHccccccccc
Secondary Structure Prediction (SSPRO)
cccccccccccccccccccccccHccccccccEEcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHcccccccccc
Coil and Loop (DISEMBL)
mcaelnqsYTMAQDffnahditplqwgndqmqlcyncdsckAGLLANLKKEWRRVDIILIVTLVALILVYLIGCcafrndktEDLFRKYKQGTYT
Flexible Loop (DISEMBL)
MCAELNQSYTMAQDFFNAHDITPLQWGNDQMQLCYNCDSCKAGLLANLKKEWRRVDIILIVTLVALILVYLIGCCAfrndktedlfrkykqgtyt
Low Complexity Region (SEG)
MCAELNQSYTMAQDFFNAHDITPLQWGNDQMQLCYNCDSCKAGLLANLKKEWRRvdiilivtlvalilvyliGCCAFRNDKTEDLFRKYKQGTYT
Disordered region (IsUnstruct)
********YTMAQDFFNAHDITPLQWGNDQMQLCYNCDSCKAGLLANLKKEWRRVDIILIVTLVALILVYLIGCCAFRNDKTEDLFR********
Disordered Region (DISOPRED)
MCAELNQSYTMAQDFFNAHDITPLQWGNDQMQLCYNCDSCKAGLLANLKKEWRRVDIILIVTLVALILVYLIGCCAFRNDKTEDLFRK***G***
Disordered Region (DISEMBL)
MCAELNQSYTMAQDFFNAHDITPLQWGNDQMQLCYNCDSCKAGLLANLKKEWRRVDIILIVTLVALILVYLIGCCAFRNDKTEDLFRKYKQGTYT
Disordered Region (DISPRO)
MCAELNQSYTMAQDFFNAHDITPLQWGNDQMQLCYNCDSCKAGLLANLKKEWRRVDIILIVTLVALILVYLIGCCAFRNDKTEDLFRKYK*****
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MCAELNQSYTMAQDFFNAHDITPLQWGNDQMQLCYNCDSCKAGLLANLKKEWRRVDIILIVTLVALILVYLIGCCAFRNDKTEDLFRKYKQGTYT
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	95	2.2.26 [Sep-21-2011]
Q9ZUN5	270	Tetraspanin-2 OS=Arabidop	yes	no	0.968	0.340	0.484	1e-27
Q9FIQ5	269	Protein TORNADO 2 OS=Arab	no	no	0.968	0.342	0.504	1e-24
Q9M0B7	272	Tetraspanin-9 OS=Arabidop	no	no	0.663	0.231	0.539	1e-14
Q8S8Q6	273	Tetraspanin-8 OS=Arabidop	no	no	0.663	0.230	0.539	2e-14
Q9M1E7	285	Tetraspanin-3 OS=Arabidop	no	no	0.642	0.214	0.524	6e-13
Q9SUD4	263	Tetraspanin-7 OS=Arabidop	no	no	0.621	0.224	0.508	2e-12
Q9LPR6	271	Tetraspanin-11 OS=Arabido	no	no	0.6	0.210	0.508	8e-12
Q84WF6	281	Tetraspanin-5 OS=Arabidop	no	no	0.726	0.245	0.357	6e-11
Q9C7C1	282	Tetraspanin-6 OS=Arabidop	no	no	0.610	0.205	0.465	1e-07
Q9FN51	264	Tetraspanin-12 OS=Arabido	no	no	0.610	0.219	0.362	2e-06

>sp|Q9ZUN5|TET2_ARATH Tetraspanin-2 OS=Arabidopsis thaliana GN=TET2 PE=2 SV=1

 Score =  121 bits (303), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 61/126 (48%), Positives = 75/126 (59%), Gaps = 34/126 (26%)

Query: 1   MCAELNQSYTMAQDFFNAHDITPLQ----------------------------------W 26
           +C +LNQ +  A  FF++  ITPLQ                                  W
Sbjct: 143 VCPKLNQEFITADQFFSSSKITPLQSGCCKPPTACGYNFVNPTLWLNPTNMAADADCYLW 202

Query: 27  GNDQMQLCYNCDSCKAGLLANLKKEWRRVDIILIVTLVALILVYLIGCCAFRNDKTEDLF 86
            NDQ QLCYNC+SCKAGLL NL+KEWR+ ++ILI+T+V LI VY+I C AFRN +TEDLF
Sbjct: 203 SNDQSQLCYNCNSCKAGLLGNLRKEWRKANLILIITVVVLIWVYVIACSAFRNAQTEDLF 262

Query: 87  RKYKQG 92
           RKYKQG
Sbjct: 263 RKYKQG 268

May be involved in the regulation of cell differentiation.
Arabidopsis thaliana (taxid: 3702)

>sp|Q9FIQ5|TRN2_ARATH Protein TORNADO 2 OS=Arabidopsis thaliana GN=TRN2 PE=1 SV=1

 Score =  111 bits (277), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 63/125 (50%), Positives = 76/125 (60%), Gaps = 33/125 (26%)

Query: 1   MCAELNQSYTMAQDFFNAH---------------------------------DITPLQWG 27
           +C ELNQ YT+AQDFFNAH                                 D+  L W 
Sbjct: 143 ICPELNQRYTLAQDFFNAHLDPIQSGCCKPPTKCGFTFVNPTYWISPIDMSADMDCLNWS 202

Query: 28  NDQMQLCYNCDSCKAGLLANLKKEWRRVDIILIVTLVALILVYLIGCCAFRNDKTEDLFR 87
           NDQ  LCY CDSCKAGLLAN+K +W + DI L++ L+ LI+VY+IGCCAFRN +TED+FR
Sbjct: 203 NDQNTLCYTCDSCKAGLLANIKVDWLKADIFLLLALIGLIIVYIIGCCAFRNAETEDIFR 262

Query: 88  KYKQG 92
           KYKQG
Sbjct: 263 KYKQG 267

Involved in the basipetal transport of auxin (IAA) that modulates growth and organs organization, as well as cell differentiation. Regulates shoot apical meristem (SAM) organization in the peripheral zone. Required for initial meristematic divisions in the epidermal/lateral root cap leading to the formation of epidermal cells and a clone of lateral root cap cells, as well as for the maintenance of the radial pattern of cell specification in the root, thus regulating the distinction between the lateral root cap and epidermis. Together with WIH peptides, promotes megasporogenesis.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9M0B7|TET9_ARATH Tetraspanin-9 OS=Arabidopsis thaliana GN=TET9 PE=2 SV=1

 Score = 78.6 bits (192), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 34/63 (53%), Positives = 46/63 (73%)

Query: 26  WGNDQMQLCYNCDSCKAGLLANLKKEWRRVDIILIVTLVALILVYLIGCCAFRNDKTEDL 85
           W N++ +LCYNC +CKAG L NLK  W+RV I+ I+ LV L++VY +GCCAFRN+K +  
Sbjct: 204 WDNEKHKLCYNCKACKAGFLDNLKAAWKRVAIVNIIFLVLLVVVYAMGCCAFRNNKEDRY 263

Query: 86  FRK 88
            R 
Sbjct: 264 GRS 266

May be involved in the regulation of cell differentiation.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8S8Q6|TET8_ARATH Tetraspanin-8 OS=Arabidopsis thaliana GN=TET8 PE=2 SV=1

 Score = 77.8 bits (190), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 34/63 (53%), Positives = 48/63 (76%)

Query: 26  WGNDQMQLCYNCDSCKAGLLANLKKEWRRVDIILIVTLVALILVYLIGCCAFRNDKTEDL 85
           W N + +LC++C SCKAGLL N+K  W++V I+ IV LV LI+VY +GCCAFRN+K +D 
Sbjct: 205 WDNAKEKLCFDCQSCKAGLLDNVKSAWKKVAIVNIVFLVFLIIVYSVGCCAFRNNKRDDS 264

Query: 86  FRK 88
           + +
Sbjct: 265 YSR 267

May be involved in the regulation of cell differentiation.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9M1E7|TET3_ARATH Tetraspanin-3 OS=Arabidopsis thaliana GN=TET3 PE=2 SV=1

 Score = 72.8 bits (177), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 32/61 (52%), Positives = 42/61 (68%)

Query: 24  LQWGNDQMQLCYNCDSCKAGLLANLKKEWRRVDIILIVTLVALILVYLIGCCAFRNDKTE 83
           + W NDQ  LCY C SCKAG+L +LKK WR+V +I IV L+ L++ Y+I   A+RN K  
Sbjct: 205 MVWSNDQSMLCYQCSSCKAGVLGSLKKSWRKVSVINIVVLIILVIFYVIAYAAYRNVKRI 264

Query: 84  D 84
           D
Sbjct: 265 D 265

May be involved in the regulation of cell differentiation.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SUD4|TET7_ARATH Tetraspanin-7 OS=Arabidopsis thaliana GN=TET7 PE=2 SV=1

 Score = 70.9 bits (172), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 30/59 (50%), Positives = 42/59 (71%)

Query: 26  WGNDQMQLCYNCDSCKAGLLANLKKEWRRVDIILIVTLVALILVYLIGCCAFRNDKTED 84
           W N    LCY+C++CKAGLL N+K  W++V  + IV L+ LI+VY +GCCAFRN++   
Sbjct: 204 WDNKPGTLCYDCEACKAGLLDNIKNSWKKVAKVNIVFLIFLIIVYSVGCCAFRNNRKRS 262

May be involved in the regulation of cell differentiation.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LPR6|TET11_ARATH Tetraspanin-11 OS=Arabidopsis thaliana GN=TET11 PE=2 SV=1

 Score = 68.9 bits (167), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 29/57 (50%), Positives = 43/57 (75%)

Query: 26  WGNDQMQLCYNCDSCKAGLLANLKKEWRRVDIILIVTLVALILVYLIGCCAFRNDKT 82
           W N Q +LC+NC++CKAG+LAN++++WR + +  I  L+ LI VY  GCCA RN++T
Sbjct: 208 WSNVQTELCFNCNACKAGVLANIREKWRNLLVFNICLLILLITVYSCGCCARRNNRT 264

May be involved in the regulation of cell differentiation.

Arabidopsis thaliana (taxid: 3702)

>sp|Q84WF6|TET5_ARATH Tetraspanin-5 OS=Arabidopsis thaliana GN=TET5 PE=2 SV=1

 Score = 65.9 bits (159), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 25/70 (35%), Positives = 46/70 (65%), Gaps = 1/70 (1%)

Query: 25  QWGNDQMQLCYNCDSCKAGLLANLKKEWRRVDIILIVTLVALILVYLIGCCAFRNDKTED 84
           +W N    LCY+CD+C+AG+L  ++++W ++ ++ ++ ++ LI VY +GCCAF+N K   
Sbjct: 190 RWNNAATVLCYDCDTCRAGVLETVRRDWHKLSLVNVIVVIFLIAVYCVGCCAFKNAKRPQ 249

Query: 85  LFRKYKQGTY 94
            +  +  G Y
Sbjct: 250 HY-GFPYGRY 258

May be involved in the regulation of cell differentiation.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9C7C1|TET6_ARATH Tetraspanin-6 OS=Arabidopsis thaliana GN=TET6 PE=2 SV=1

 Score = 55.1 bits (131), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 27/58 (46%), Positives = 39/58 (67%)

Query: 24  LQWGNDQMQLCYNCDSCKAGLLANLKKEWRRVDIILIVTLVALILVYLIGCCAFRNDK 81
            +W N    LCY CD+CKAG+L  ++ +WR++ ++ I+ LV LI VY  GCCAF N +
Sbjct: 188 FRWNNGVEMLCYECDACKAGVLEEIRLDWRKLSVVNILVLVLLIAVYAAGCCAFHNTR 245

May be involved in the regulation of cell differentiation.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FN51|TET12_ARATH Tetraspanin-12 OS=Arabidopsis thaliana GN=TET12 PE=2 SV=1

 Score = 50.8 bits (120), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 21/58 (36%), Positives = 38/58 (65%)

Query: 26  WGNDQMQLCYNCDSCKAGLLANLKKEWRRVDIILIVTLVALILVYLIGCCAFRNDKTE 83
           W N Q QLCY C+SCK G+L  ++K WR + ++ ++ ++ ++ +Y  GCC  +N++  
Sbjct: 201 WSNTQRQLCYACESCKIGVLKGIRKRWRILIVVNLLLILLVVFLYSCGCCVRKNNRVP 258

May be involved in the regulation of cell differentiation.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	95
224138936	269	predicted protein [Populus trichocarpa]	0.968	0.342	0.624	1e-34
118482532	269	unknown [Populus trichocarpa]	0.968	0.342	0.624	1e-34
224074285	269	predicted protein [Populus trichocarpa]	0.947	0.334	0.608	8e-34
225427187	269	PREDICTED: uncharacterized protein LOC10	0.957	0.338	0.603	8e-34
255554749	269	conserved hypothetical protein [Ricinus	0.957	0.338	0.611	3e-33
357517009	359	hypothetical protein MTR_8g066790 [Medic	0.957	0.253	0.555	6e-31
356495865	269	PREDICTED: uncharacterized protein LOC10	0.957	0.338	0.547	3e-29
356496392	269	PREDICTED: uncharacterized protein LOC10	0.968	0.342	0.592	2e-27
116786374	257	unknown [Picea sitchensis]	0.936	0.346	0.540	3e-27
356531423	269	PREDICTED: uncharacterized protein LOC10	0.968	0.342	0.584	4e-27

>gi|224138936|ref|XP_002326727.1| predicted protein [Populus trichocarpa] gi|222834049|gb|EEE72526.1| predicted protein [Populus trichocarpa]

 Score =  150 bits (379), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 78/125 (62%), Positives = 84/125 (67%), Gaps = 33/125 (26%)

Query: 1   MCAELNQSYTMAQDFFNAH---------------------------------DITPLQWG 27
           MCAELNQSY MAQDFFNAH                                 D+  LQW 
Sbjct: 143 MCAELNQSYRMAQDFFNAHISPLQSGCCKPPTQCGYTFVNPTYWISPINNAADMDCLQWN 202

Query: 28  NDQMQLCYNCDSCKAGLLANLKKEWRRVDIILIVTLVALILVYLIGCCAFRNDKTEDLFR 87
           NDQ QLCYNCDSCKAGLLANLK+EWRR DIIL++TLVALI VYL+GCCAFRN KTEDLFR
Sbjct: 203 NDQNQLCYNCDSCKAGLLANLKEEWRRADIILLITLVALICVYLVGCCAFRNAKTEDLFR 262

Query: 88  KYKQG 92
           +YKQG
Sbjct: 263 RYKQG 267

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|118482532|gb|ABK93187.1| unknown [Populus trichocarpa]

 Score =  150 bits (378), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 78/125 (62%), Positives = 84/125 (67%), Gaps = 33/125 (26%)

Query: 1   MCAELNQSYTMAQDFFNAH---------------------------------DITPLQWG 27
           MCAELNQSY MAQDFFNAH                                 D+  LQW 
Sbjct: 143 MCAELNQSYRMAQDFFNAHISPLQSGCCKPPTQCGYTFVNPTYWISPINNAADMDCLQWN 202

Query: 28  NDQMQLCYNCDSCKAGLLANLKKEWRRVDIILIVTLVALILVYLIGCCAFRNDKTEDLFR 87
           NDQ QLCYNCDSCKAGLLANLK+EWRR DIIL++TLVALI VYL+GCCAFRN KTEDLFR
Sbjct: 203 NDQNQLCYNCDSCKAGLLANLKEEWRRADIILLITLVALICVYLVGCCAFRNAKTEDLFR 262

Query: 88  KYKQG 92
           +YKQG
Sbjct: 263 RYKQG 267

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224074285|ref|XP_002304338.1| predicted protein [Populus trichocarpa] gi|222841770|gb|EEE79317.1| predicted protein [Populus trichocarpa]

 Score =  147 bits (371), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 76/125 (60%), Positives = 84/125 (67%), Gaps = 35/125 (28%)

Query: 2   CAELNQSYTMAQDFFNAHDITPLQ----------------------------------WG 27
           CAELNQSY MAQDFFNAH I+PLQ                                  W 
Sbjct: 144 CAELNQSYHMAQDFFNAH-ISPLQSGCCKPPTECGYTFVNPTYWISPINIAADMDCLKWN 202

Query: 28  NDQMQLCYNCDSCKAGLLANLKKEWRRVDIILIVTLVALILVYLIGCCAFRNDKTEDLFR 87
           NDQ QLCYNCDSCKAGLLANLK+EWRR D++L++TL+ALI VYLIGCCAFRN KTEDLFR
Sbjct: 203 NDQNQLCYNCDSCKAGLLANLKREWRRADVVLLITLIALICVYLIGCCAFRNAKTEDLFR 262

Query: 88  KYKQG 92
           +YKQG
Sbjct: 263 RYKQG 267

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225427187|ref|XP_002278741.1| PREDICTED: uncharacterized protein LOC100266064 [Vitis vinifera] gi|147774778|emb|CAN69080.1| hypothetical protein VITISV_042237 [Vitis vinifera] gi|297742090|emb|CBI33877.3| unnamed protein product [Vitis vinifera]

 Score =  147 bits (371), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 76/126 (60%), Positives = 84/126 (66%), Gaps = 35/126 (27%)

Query: 1   MCAELNQSYTMAQDFFNAHDITP----------------------------------LQW 26
           MCAELNQ Y MAQDFFNAH I+P                                  LQW
Sbjct: 143 MCAELNQRYRMAQDFFNAH-ISPIQSGCCKPPTECGYTFVNPSYWISPIYTAADMDCLQW 201

Query: 27  GNDQMQLCYNCDSCKAGLLANLKKEWRRVDIILIVTLVALILVYLIGCCAFRNDKTEDLF 86
            N+Q QLCYNC+SCKAGLLANLKKEWRR DI+L++TL+ALI VYLIGCCAFRN KTE+LF
Sbjct: 202 SNEQTQLCYNCNSCKAGLLANLKKEWRRADIVLLITLIALIAVYLIGCCAFRNAKTEELF 261

Query: 87  RKYKQG 92
           RKYKQG
Sbjct: 262 RKYKQG 267

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255554749|ref|XP_002518412.1| conserved hypothetical protein [Ricinus communis] gi|223542257|gb|EEF43799.1| conserved hypothetical protein [Ricinus communis]

 Score =  145 bits (367), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 77/126 (61%), Positives = 84/126 (66%), Gaps = 35/126 (27%)

Query: 1   MCAELNQSYTMAQDFFNAHDITPLQ----------------------------------W 26
           MCAELNQSY MAQDFFNA  ITPLQ                                  W
Sbjct: 143 MCAELNQSYRMAQDFFNAR-ITPLQSGCCKPPTQCGYTFVNPTYWISPINNAADMDCLNW 201

Query: 27  GNDQMQLCYNCDSCKAGLLANLKKEWRRVDIILIVTLVALILVYLIGCCAFRNDKTEDLF 86
            NDQ QLCY+CDSCKAGLLAN+KKEWRR DIIL++TLVALI VYL+GCCAFRN KTED+F
Sbjct: 202 NNDQNQLCYSCDSCKAGLLANIKKEWRRADIILLITLVALICVYLLGCCAFRNAKTEDIF 261

Query: 87  RKYKQG 92
           R+YKQG
Sbjct: 262 RRYKQG 267

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357517009|ref|XP_003628793.1| hypothetical protein MTR_8g066790 [Medicago truncatula] gi|355522815|gb|AET03269.1| hypothetical protein MTR_8g066790 [Medicago truncatula]

 Score =  137 bits (346), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 70/126 (55%), Positives = 81/126 (64%), Gaps = 35/126 (27%)

Query: 1   MCAELNQSYTMAQDFFNAHDITPLQ----------------------------------W 26
           MCAELNQSY +AQDFFNAH ++PLQ                                  W
Sbjct: 143 MCAELNQSYRIAQDFFNAH-LSPLQSGCCKPPTKCGYTFVNPTYWISPINTNEDMDCMKW 201

Query: 27  GNDQMQLCYNCDSCKAGLLANLKKEWRRVDIILIVTLVALILVYLIGCCAFRNDKTEDLF 86
            N+Q QLCYNCDSCKAGLLA ++ EWR+ ++ILIVTL+ LILVYL GC AFRN KTE+LF
Sbjct: 202 SNEQTQLCYNCDSCKAGLLATIRIEWRKANVILIVTLIGLILVYLFGCFAFRNAKTEELF 261

Query: 87  RKYKQG 92
           RKYKQG
Sbjct: 262 RKYKQG 267

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356495865|ref|XP_003516791.1| PREDICTED: uncharacterized protein LOC100789266 [Glycine max]

 Score =  132 bits (331), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 69/126 (54%), Positives = 80/126 (63%), Gaps = 35/126 (27%)

Query: 1   MCAELNQSYTMAQDFFNAHDITPLQ----------------------------------W 26
           +CA+L+Q Y  AQ+FFNAH +TP+Q                                  W
Sbjct: 143 ICADLDQQYRTAQEFFNAH-LTPIQSGCCKPPTKCGYTFVNPTYWISPINTAVDMDCMKW 201

Query: 27  GNDQMQLCYNCDSCKAGLLANLKKEWRRVDIILIVTLVALILVYLIGCCAFRNDKTEDLF 86
            NDQ QLCYNCDSCKAGLLA L+ EWRR ++ILIVTLVALI VYL+GC AFRN KTE+LF
Sbjct: 202 SNDQAQLCYNCDSCKAGLLATLRVEWRRANVILIVTLVALIAVYLVGCFAFRNAKTEELF 261

Query: 87  RKYKQG 92
           RKYKQG
Sbjct: 262 RKYKQG 267

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356496392|ref|XP_003517052.1| PREDICTED: uncharacterized protein LOC100795775 [Glycine max]

 Score =  126 bits (316), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 74/125 (59%), Positives = 83/125 (66%), Gaps = 33/125 (26%)

Query: 1   MCAELNQSYTMAQDFFNAH---------------------------------DITPLQWG 27
           MCAELNQSY MAQDFFNA                                  D+  LQW 
Sbjct: 143 MCAELNQSYRMAQDFFNARLTPMQSGCCKPPTQCAYTFVNPTYWISPINTAADMDCLQWS 202

Query: 28  NDQMQLCYNCDSCKAGLLANLKKEWRRVDIILIVTLVALILVYLIGCCAFRNDKTEDLFR 87
           NDQ QLCYNCDSCKAGLLANL+KEWRR ++ILI+T++ LI+VYL+GCCAFRN KTEDLFR
Sbjct: 203 NDQTQLCYNCDSCKAGLLANLRKEWRRANVILIITVIVLIIVYLVGCCAFRNVKTEDLFR 262

Query: 88  KYKQG 92
           KYKQG
Sbjct: 263 KYKQG 267

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|116786374|gb|ABK24083.1| unknown [Picea sitchensis]

 Score =  125 bits (314), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 66/122 (54%), Positives = 77/122 (63%), Gaps = 33/122 (27%)

Query: 4   ELNQSYTMAQDFFNAH---------------------------------DITPLQWGNDQ 30
           +L+Q Y  AQ FF+AH                                 DI  + W NDQ
Sbjct: 131 QLDQRYPSAQYFFSAHLKPLESGCCIPPSVCGYSFVNPTYWINPVNQNADIDCMLWSNDQ 190

Query: 31  MQLCYNCDSCKAGLLANLKKEWRRVDIILIVTLVALILVYLIGCCAFRNDKTEDLFRKYK 90
           MQLCYNC+SCKAGLL NLKKEWR+++IILIVTLVALI VYLIGC AFRN +TE+LFR+YK
Sbjct: 191 MQLCYNCNSCKAGLLGNLKKEWRKINIILIVTLVALIWVYLIGCSAFRNAQTEELFRRYK 250

Query: 91  QG 92
           QG
Sbjct: 251 QG 252

Source: Picea sitchensis

Species: Picea sitchensis

Genus: Picea

Family: Pinaceae

Order: Coniferales

Class: Coniferopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356531423|ref|XP_003534277.1| PREDICTED: uncharacterized protein LOC100791755 [Glycine max]

 Score =  125 bits (313), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 73/125 (58%), Positives = 82/125 (65%), Gaps = 33/125 (26%)

Query: 1   MCAELNQSYTMAQDFFNAH---------------------------------DITPLQWG 27
           MCAELNQ Y MAQDFFNA                                  D+  LQW 
Sbjct: 143 MCAELNQGYRMAQDFFNARLTPMQSGCCKPPTQCAYTFVNPTYWISPINTAADMDCLQWS 202

Query: 28  NDQMQLCYNCDSCKAGLLANLKKEWRRVDIILIVTLVALILVYLIGCCAFRNDKTEDLFR 87
           NDQ QLCYNCDSCKAGLLANL+KEWRR ++ILI+T++ LI+VYL+GCCAFRN KTEDLFR
Sbjct: 203 NDQTQLCYNCDSCKAGLLANLRKEWRRANVILIITVIVLIIVYLVGCCAFRNAKTEDLFR 262

Query: 88  KYKQG 92
           KYKQG
Sbjct: 263 KYKQG 267

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	95
TAIR|locus:2050354	270	TET2 "AT2G19580" [Arabidopsis	0.705	0.248	0.582	2.1e-23
TAIR|locus:2178570	269	TRN2 "AT5G46700" [Arabidopsis	0.936	0.330	0.483	2.2e-18
TAIR|locus:2118696	272	TET9 "AT4G30430" [Arabidopsis	0.631	0.220	0.442	3.3e-10
TAIR|locus:2048982	273	TET8 "AT2G23810" [Arabidopsis	0.673	0.234	0.4	7.3e-10
TAIR|locus:2014054	271	TET11 "AT1G18520" [Arabidopsis	0.6	0.210	0.403	2.6e-09
TAIR|locus:2132992	263	TET7 "AT4G28050" [Arabidopsis	0.589	0.212	0.392	1.5e-08
TAIR|locus:2144050	327	TET4 "tetraspanin4" [Arabidops	0.589	0.171	0.410	9.2e-08
TAIR|locus:2099272	282	TET6 "AT3G12090" [Arabidopsis	0.6	0.202	0.350	1.1e-07
TAIR|locus:2085692	285	TET3 "AT3G45600" [Arabidopsis	0.621	0.207	0.406	1.4e-07
TAIR|locus:2178327	264	TET12 "AT5G23030" [Arabidopsis	0.589	0.212	0.357	9.3e-07

TAIR|locus:2050354 TET2 "AT2G19580" [Arabidopsis thaliana (taxid:3702)]

 Score = 214 (80.4 bits), Expect = 2.1e-23, Sum P(2) = 2.1e-23
 Identities = 39/67 (58%), Positives = 43/67 (64%)

Query:    26 WGNDQMQLCYNCDSCKAGLLANLKKEWRRXXXXXXXXXXXXXXXXXXGCCAFRNDKTEDL 85
             W NDQ QLCYNC+SCKAGLL NL+KEWR+                   C AFRN +TEDL
Sbjct:   202 WSNDQSQLCYNCNSCKAGLLGNLRKEWRKANLILIITVVVLIWVYVIACSAFRNAQTEDL 261

Query:    86 FRKYKQG 92
             FRKYKQG
Sbjct:   262 FRKYKQG 268

GO:0003674 "molecular_function" evidence=ND

GO:0007568 "aging" evidence=ISS

GO:0009507 "chloroplast" evidence=ISM

GO:0016021 "integral to membrane" evidence=IEA

TAIR|locus:2178570 TRN2 "AT5G46700" [Arabidopsis thaliana (taxid:3702)]

 Score = 222 (83.2 bits), Expect = 2.2e-18, P = 2.2e-18
 Identities = 44/91 (48%), Positives = 55/91 (60%)

Query:     5 LNQSYTMAQDFFNAHDITPLQWGNDQMQLCYNCDSCKAGLLANLKKEWRRXXXXXXXXXX 64
             +N +Y ++    +A D+  L W NDQ  LCY CDSCKAGLLAN+K +W +          
Sbjct:   181 VNPTYWISPIDMSA-DMDCLNWSNDQNTLCYTCDSCKAGLLANIKVDWLKADIFLLLALI 239

Query:    65 XXXXXXXXGCCAFRNDKTEDLFRKYKQGTYT 95
                     GCCAFRN +TED+FRKYKQG YT
Sbjct:   240 GLIIVYIIGCCAFRNAETEDIFRKYKQG-YT 269

GO:0003674 "molecular_function" evidence=ND

GO:0007568 "aging" evidence=ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0009933 "meristem structural organization" evidence=IMP

GO:0009956 "radial pattern formation" evidence=IMP

GO:0010015 "root morphogenesis" evidence=RCA;IMP

GO:0010305 "leaf vascular tissue pattern formation" evidence=IMP

GO:0005886 "plasma membrane" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

GO:0007389 "pattern specification process" evidence=RCA

GO:0008361 "regulation of cell size" evidence=RCA

GO:0009855 "determination of bilateral symmetry" evidence=RCA

GO:0009926 "auxin polar transport" evidence=RCA

GO:0009944 "polarity specification of adaxial/abaxial axis" evidence=RCA

GO:0010014 "meristem initiation" evidence=RCA

GO:0010051 "xylem and phloem pattern formation" evidence=RCA

GO:0010073 "meristem maintenance" evidence=RCA

GO:0010075 "regulation of meristem growth" evidence=RCA

GO:0019344 "cysteine biosynthetic process" evidence=RCA

GO:0040007 "growth" evidence=RCA

TAIR|locus:2118696 TET9 "AT4G30430" [Arabidopsis thaliana (taxid:3702)]

 Score = 148 (57.2 bits), Expect = 3.3e-10, P = 3.3e-10
 Identities = 27/61 (44%), Positives = 34/61 (55%)

Query:    26 WGNDQMQLCYNCDSCKAGLLANLKKEWRRXXXXXXXXXXXXXXXXXXGCCAFRNDKTEDL 85
             W N++ +LCYNC +CKAG L NLK  W+R                  GCCAFRN+K ED 
Sbjct:   204 WDNEKHKLCYNCKACKAGFLDNLKAAWKRVAIVNIIFLVLLVVVYAMGCCAFRNNK-EDR 262

Query:    86 F 86
             +
Sbjct:   263 Y 263

GO:0003674 "molecular_function" evidence=ND

GO:0005576 "extracellular region" evidence=ISM

GO:0007568 "aging" evidence=ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0005886 "plasma membrane" evidence=IDA

TAIR|locus:2048982 TET8 "AT2G23810" [Arabidopsis thaliana (taxid:3702)]

 Score = 145 (56.1 bits), Expect = 7.3e-10, P = 7.3e-10
 Identities = 26/65 (40%), Positives = 36/65 (55%)

Query:    26 WGNDQMQLCYNCDSCKAGLLANLKKEWRRXXXXXXXXXXXXXXXXXXGCCAFRNDKTEDL 85
             W N + +LC++C SCKAGLL N+K  W++                  GCCAFRN+K +D 
Sbjct:   205 WDNAKEKLCFDCQSCKAGLLDNVKSAWKKVAIVNIVFLVFLIIVYSVGCCAFRNNKRDDS 264

Query:    86 F-RKY 89
             + R Y
Sbjct:   265 YSRTY 269

GO:0003674 "molecular_function" evidence=ND

GO:0005576 "extracellular region" evidence=ISM

GO:0007568 "aging" evidence=ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0005886 "plasma membrane" evidence=IDA

GO:0016020 "membrane" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0009611 "response to wounding" evidence=RCA

GO:0009612 "response to mechanical stimulus" evidence=RCA

GO:0009693 "ethylene biosynthetic process" evidence=RCA

GO:0010200 "response to chitin" evidence=RCA

GO:0050832 "defense response to fungus" evidence=RCA

TAIR|locus:2014054 TET11 "AT1G18520" [Arabidopsis thaliana (taxid:3702)]

 Score = 140 (54.3 bits), Expect = 2.6e-09, P = 2.6e-09
 Identities = 23/57 (40%), Positives = 34/57 (59%)

Query:    26 WGNDQMQLCYNCDSCKAGLLANLKKEWRRXXXXXXXXXXXXXXXXXXGCCAFRNDKT 82
             W N Q +LC+NC++CKAG+LAN++++WR                   GCCA RN++T
Sbjct:   208 WSNVQTELCFNCNACKAGVLANIREKWRNLLVFNICLLILLITVYSCGCCARRNNRT 264

GO:0003674 "molecular_function" evidence=ND

GO:0005576 "extracellular region" evidence=ISM

GO:0007568 "aging" evidence=ISS

GO:0016021 "integral to membrane" evidence=IEA

TAIR|locus:2132992 TET7 "AT4G28050" [Arabidopsis thaliana (taxid:3702)]

 Score = 133 (51.9 bits), Expect = 1.5e-08, P = 1.5e-08
 Identities = 22/56 (39%), Positives = 30/56 (53%)

Query:    26 WGNDQMQLCYNCDSCKAGLLANLKKEWRRXXXXXXXXXXXXXXXXXXGCCAFRNDK 81
             W N    LCY+C++CKAGLL N+K  W++                  GCCAFRN++
Sbjct:   204 WDNKPGTLCYDCEACKAGLLDNIKNSWKKVAKVNIVFLIFLIIVYSVGCCAFRNNR 259

GO:0003674 "molecular_function" evidence=ND

GO:0005576 "extracellular region" evidence=ISM

GO:0007568 "aging" evidence=ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0009506 "plasmodesma" evidence=IDA

GO:0007020 "microtubule nucleation" evidence=RCA

TAIR|locus:2144050 TET4 "tetraspanin4" [Arabidopsis thaliana (taxid:3702)]

 Score = 128 (50.1 bits), Expect = 9.2e-08, P = 9.2e-08
 Identities = 23/56 (41%), Positives = 28/56 (50%)

Query:    26 WGNDQMQLCYNCDSCKAGLLANLKKEWRRXXXXXXXXXXXXXXXXXXGCCAFRNDK 81
             W NDQ  LCY C SCKAG+L +LKK WR+                   C A++N K
Sbjct:   207 WNNDQRLLCYQCSSCKAGVLGSLKKSWRKVSVINIVVVIILVIFYVIACAAYQNVK 262

GO:0005576 "extracellular region" evidence=ISM

GO:0007568 "aging" evidence=ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0009062 "fatty acid catabolic process" evidence=RCA

TAIR|locus:2099272 TET6 "AT3G12090" [Arabidopsis thaliana (taxid:3702)]

 Score = 126 (49.4 bits), Expect = 1.1e-07, P = 1.1e-07
 Identities = 20/57 (35%), Positives = 28/57 (49%)

Query:    25 QWGNDQMQLCYNCDSCKAGLLANLKKEWRRXXXXXXXXXXXXXXXXXXGCCAFRNDK 81
             +W N    LCY CD+CKAG+L  ++ +WR+                  GCCAF N +
Sbjct:   189 RWNNGVEMLCYECDACKAGVLEEIRLDWRKLSVVNILVLVLLIAVYAAGCCAFHNTR 245

GO:0003674 "molecular_function" evidence=ND

GO:0007568 "aging" evidence=ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0000041 "transition metal ion transport" evidence=RCA

TAIR|locus:2085692 TET3 "AT3G45600" [Arabidopsis thaliana (taxid:3702)]

 Score = 125 (49.1 bits), Expect = 1.4e-07, P = 1.4e-07
 Identities = 24/59 (40%), Positives = 28/59 (47%)

Query:    26 WGNDQMQLCYNCDSCKAGLLANLKKEWRRXXXXXXXXXXXXXXXXXXGCCAFRNDKTED 84
             W NDQ  LCY C SCKAG+L +LKK WR+                     A+RN K  D
Sbjct:   207 WSNDQSMLCYQCSSCKAGVLGSLKKSWRKVSVINIVVLIILVIFYVIAYAAYRNVKRID 265

GO:0003674 "molecular_function" evidence=ND

GO:0007568 "aging" evidence=ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0005886 "plasma membrane" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

TAIR|locus:2178327 TET12 "AT5G23030" [Arabidopsis thaliana (taxid:3702)]

 Score = 117 (46.2 bits), Expect = 9.3e-07, P = 9.3e-07
 Identities = 20/56 (35%), Positives = 27/56 (48%)

Query:    26 WGNDQMQLCYNCDSCKAGLLANLKKEWRRXXXXXXXXXXXXXXXXXXGCCAFRNDK 81
             W N Q QLCY C+SCK G+L  ++K WR                   GCC  +N++
Sbjct:   201 WSNTQRQLCYACESCKIGVLKGIRKRWRILIVVNLLLILLVVFLYSCGCCVRKNNR 256


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.324   0.134   0.457    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0       95        77   0.00091  102 3  11 22  0.50    28
                                                     29  0.50    29


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  10
  No. of states in DFA:  586 (62 KB)
  Total size of DFA:  130 KB (2082 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  8.10u 0.12s 8.22t   Elapsed:  00:00:00
  Total cpu time:  8.10u 0.12s 8.22t   Elapsed:  00:00:00
  Start:  Mon May 20 16:26:54 2013   End:  Mon May 20 16:26:54 2013

GO:0003674 "molecular_function" evidence=ND

GO:0005576 "extracellular region" evidence=ISM

GO:0007568 "aging" evidence=ISS

GO:0016021 "integral to membrane" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: estExt_fgenesh4_pm.C_290090 SubName- Full=Putative uncharacterized protein; (269 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	95
pfam00335	221	pfam00335, Tetraspannin, Tetraspanin family	2e-05
pfam01708	92	pfam01708, Gemini_mov, Geminivirus putative moveme	0.002

>gnl|CDD|215864 pfam00335, Tetraspannin, Tetraspanin family

 Score = 40.5 bits (95), Expect = 2e-05
 Identities = 17/60 (28%), Positives = 26/60 (43%)

Query: 20  DITPLQWGNDQMQLCYNCDSCKAGLLANLKKEWRRVDIILIVTLVALILVYLIGCCAFRN 79
           D     W ND   L    + CK  LL  LKK  + +  + +   V  +L  ++ CC  R+
Sbjct: 161 DSDCCCWNNDTSNLNIYTEGCKEKLLEFLKKNLKIIGGVGLGIAVIQLLGIILACCLCRS 220

Length = 221

>gnl|CDD|216655 pfam01708, Gemini_mov, Geminivirus putative movement protein

 Score = 34.0 bits (78), Expect = 0.002
 Identities = 11/20 (55%), Positives = 14/20 (70%)

Query: 52 WRRVDIILIVTLVALILVYL 71
          W RV  I I TLVA+ ++YL
Sbjct: 34 WSRVGEIAIFTLVAVGVLYL 53

This family consists of putative movement proteins from Maize streak and wheat dwarf virus. Length = 92

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	95
PF00335	221	Tetraspannin: Tetraspanin family RDS_ROM1 subfamil	92.76
PF12273	130	RCR: Chitin synthesis regulation, resistance to Co	91.73
PF09889	59	DUF2116: Uncharacterized protein containing a Zn-r	84.06

>PF00335 Tetraspannin: Tetraspanin family RDS_ROM1 subfamily; InterPro: IPR018499 A number of eukaryotic CD antigens have been shown to be related []

Probab=92.76  E-value=0.061  Score=36.76  Aligned_cols=55  Identities=16%  Similarity=0.300  Sum_probs=21.8

Q ss_pred             eeeCCCCcceecCcchhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhccccc
Q 034421           25 QWGNDQMQLCYNCDSCKAGLLANLKKEWRRVDIILIVTLVALILVYLIGCCAFRN   79 (95)
Q Consensus        25 ~WsNd~~~LCy~CdSCKAGvl~~lk~~Wr~~ai~niv~lv~Li~vy~vGCca~rn   79 (95)
                      .+..++.......+.|+..+.+.+++.+..++++.++++++.++...++|+-.|+
T Consensus       166 ~~~~~~~~~~~~~~gC~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~a~~l~~~  220 (221)
T PF00335_consen  166 CPDDCSSENSIYTRGCYDKLREYLRSYLKYIGIVSLAILVLQLIGIILACCLCRH  220 (221)
T ss_dssp             S-TTCCCCHCCTST-HHHHHHHHHCT-----------------------------
T ss_pred             ccccccccccccCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            5667788899999999999999999999999999999988888888877775554

CD9 (also called DRAP-27, MRP-1 or p24) upregulates HB-EGF activity as a receptor for diphtheria toxin as well as its juxtacrine activity. CD9 mAbs modulate cell adhesion and migration and trigger platelet activation that is blocked by mAbs directed to the platelet Fc receptor CD32. In mice, CD9 mAb KMC8.8 has been shown to inhibit the production of myeloid cells in vitro and has a costimulatory activity for T cells. CD9 is a type III membrane protein, with four putative transmembrane domains. CD37 (or gp52-40) is involved in signal transduction and serves as a stable marker for malignancies derived from mature B cells, like B-CLL, HCL, and all types of B-NHL. CD63 transfection reduced melanoma cell motility on fibronectin, collagen and laminin, and reduced the growth and metastasis of melanoma cells in nude mice []. CD63 has been used as a marker for late endosomes and for primary melanomas. These proteins are all type II membrane proteins: they contain an N-terminal transmembrane (TM) domain, which acts both as a signal sequence and a membrane anchor, and 3 additional TM regions (hence the name 'TM4'). The sequences contain a number of conserved cysteine residues. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0016021 integral to membrane; PDB: 1IV5_A 1G8Q_A.

>PF12273 RCR: Chitin synthesis regulation, resistance to Congo red; InterPro: IPR020999 RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls

Probab=91.73  E-value=0.097  Score=36.44  Aligned_cols=24  Identities=21%  Similarity=0.531  Sum_probs=10.2

Q ss_pred             HHHHHHHHHHHHHHHhhccccccc
Q 034421           58 ILIVTLVALILVYLIGCCAFRNDK   81 (95)
Q Consensus        58 ~niv~lv~Li~vy~vGCca~rn~r   81 (95)
                      +.|++++|||+++++.|-+.|..|
T Consensus         5 ~~iii~~i~l~~~~~~~~~rRR~r   28 (130)
T PF12273_consen    5 FAIIIVAILLFLFLFYCHNRRRRR   28 (130)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhh
Confidence            334444444444444444444433

Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall []. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5 [].

>PF09889 DUF2116: Uncharacterized protein containing a Zn-ribbon (DUF2116); InterPro: IPR019216 This entry contains various hypothetical prokaryotic proteins whose functions are unknown

Probab=84.06  E-value=2.8  Score=26.68  Aligned_cols=30  Identities=13%  Similarity=0.205  Sum_probs=22.2

Q ss_pred             cchhhHHHHHHHhhhhHHHHHHHHHHHHHH
Q 034421           38 DSCKAGLLANLKKEWRRVDIILIVTLVALI   67 (95)
Q Consensus        38 dSCKAGvl~~lk~~Wr~~ai~niv~lv~Li   67 (95)
                      +.|+.-....-|+.++.-.++-++++++|+
T Consensus        22 ~~C~~~~~k~qk~~~~~~~i~~~~~i~~l~   51 (59)
T PF09889_consen   22 PKCREEYRKRQKRMRKTQYIFFGIFILFLA   51 (59)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            479999999999999776666666555443

They contain a conserved zinc ribbon motif in the N-terminal part and a predicted transmembrane segment in the C-terminal part.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00