Citrus Sinensis ID: 034423

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-----
Protein Sequence
MAATDSPSSTRKVVVHFRATGGAPILKQAKFKISGSDKFAKVIEFLCRHLGRETLFVYVNSAFSPNPDELVIDLYNNFGFDGKLIVNYACSMAWG
Secondary Structure (PSIPRED)
ccccccccccccEEEEEEEccccccccccEEEEEcccHHHHHHHHHHHHHccccEEEEEccccccccHHHHHHHHHHHccccEEEEEEEcccccc
Secondary Structure Prediction (SSPRO)
cccccccccccEEEEEEEEccccccccccEEEEccccHHHHHHHHHHHHHccccEEEEEEccccccccHHHHHHHHHcccccEEEEEEEcccccc
Coil and Loop (DISEMBL)
maatdspsstRKVVVHFRatggapilkqakfkisgsDKFAKVIEFLCRHLGRETLFVYVnsafspnpdeLVIDLYNNFGFDGKLIVNYACSMAWG
Flexible Loop (DISEMBL)
maatdspsstrkVVVHFRatggapilkqakfkisgSDKFAKVIEFLCRHLGRETLFVYVNSAFSPNPDELVIDLYNNFGFDGKLIVNYACSMAWG
Low Complexity Region (SEG)
MAATDSPSSTRKVVVHFRATGGAPILKQAKFKISGSDKFAKVIEFLCRHLGRETLFVYVNSAFSPNPDELVIDLYNNFGFDGKLIVNYACSMAWG
Disordered region (IsUnstruct)
************VVVHFRATGGAPILKQAKFKISGSDKFAKVIEFLCRHLGRETLFVYVNSAFSPNPDELVIDLYNNFGFDGKLIVNYACSMAW*
Disordered Region (DISOPRED)
**************VHFRATGGAPILKQAKFKISGSDKFAKVIEFLCRHLGRETLFVYVNSAFSPNPDELVIDLYNNFGFDGKLIVNYACSMAWG
Disordered Region (DISEMBL)
***********KVVVHFRATGGAPILKQAKFKISGSDKFAKVIEFLCRHLGRETLFVYVNSAFSPNPDELVIDLYNNFGFDGKLIVNYACSMAWG
Disordered Region (DISPRO)
*********TRKVVVHFRATGGAPILKQAKFKISGSDKFAKVIEFLCRHLGRETLFVYVNSAFSPNPDELVIDLYNNFGFDGKLIVNYACSM***
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MAATDSPSSTRKVVVHFRATGGAPILKQAKFKISGSDKFAKVIEFLCRHLGRETLFVYVNSAFSPNPDELVIDLYNNFGFDGKLIVNYACSMAWG
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	95	2.2.26 [Sep-21-2011]
Q1SF86	95	Ubiquitin-like protein AT	N/A	no	1.0	1.0	0.842	5e-43
Q9LVK3	94	Ubiquitin-like protein AT	yes	no	0.978	0.989	0.806	3e-40
Q8S924	96	Ubiquitin-like protein AT	no	no	0.968	0.958	0.826	5e-40
Q69NP0	93	Ubiquitin-like protein AT	yes	no	0.978	1.0	0.673	2e-33
A2YAG8	93	Ubiquitin-like protein AT	N/A	no	0.978	1.0	0.673	2e-33
P0CM28	105	Ubiquitin-like protein AT	yes	no	0.947	0.857	0.468	1e-17
P0CM29	105	Ubiquitin-like protein AT	N/A	no	0.947	0.857	0.468	1e-17
Q9US24	132	Ubiquitin-like protein AT	yes	no	0.915	0.659	0.422	1e-16
Q86CR6	124	Ubiquitin-like protein at	yes	no	0.926	0.709	0.428	2e-16
Q2TBJ5	141	Ubiquitin-like protein AT	yes	no	0.957	0.645	0.389	4e-14

>sp|Q1SF86|ATG12_MEDTR Ubiquitin-like protein ATG12 OS=Medicago truncatula GN=ATG12 PE=3 SV=1

 Score =  172 bits (436), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 80/95 (84%), Positives = 88/95 (92%)

Query: 1  MAATDSPSSTRKVVVHFRATGGAPILKQAKFKISGSDKFAKVIEFLCRHLGRETLFVYVN 60
          MAA +SP+S RKVVVH RATG APILKQ+KFKI+G+DKFAKVI+FL R L RE+LFVYVN
Sbjct: 1  MAAAESPTSVRKVVVHLRATGDAPILKQSKFKIAGTDKFAKVIDFLRRQLHRESLFVYVN 60

Query: 61 SAFSPNPDELVIDLYNNFGFDGKLIVNYACSMAWG 95
          SAFSPNPDELVIDLYNNFGFDGKL+VNYACSMAWG
Sbjct: 61 SAFSPNPDELVIDLYNNFGFDGKLVVNYACSMAWG 95

Ubiquitin-like protein involved in cytoplasm to vacuole transport (Cvt) and autophagy vesicles formation. Conjugation with ATG5 through an ubiquitin-like conjugating system is essential for its function. ATG12/ATG5 conjugate has an essential role in plant nutrient recycling.
Medicago truncatula (taxid: 3880)

>sp|Q9LVK3|AT12B_ARATH Ubiquitin-like protein ATG12B OS=Arabidopsis thaliana GN=ATG12B PE=1 SV=1

 Score =  163 bits (413), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 75/93 (80%), Positives = 85/93 (91%)

Query: 3  ATDSPSSTRKVVVHFRATGGAPILKQAKFKISGSDKFAKVIEFLCRHLGRETLFVYVNSA 62
          AT+SP+S +K+VVH RATGGAPILKQ+KFK+SGSDKFA VI+FL R L  ++LFVYVNSA
Sbjct: 2  ATESPNSVQKIVVHLRATGGAPILKQSKFKVSGSDKFANVIDFLRRQLHSDSLFVYVNSA 61

Query: 63 FSPNPDELVIDLYNNFGFDGKLIVNYACSMAWG 95
          FSPNPDE VIDLYNNFGFDGKL+VNYACSMAWG
Sbjct: 62 FSPNPDESVIDLYNNFGFDGKLVVNYACSMAWG 94

Ubiquitin-like protein involved in cytoplasm to vacuole transport (Cvt) and autophagy vesicles formation. Conjugation with ATG5 through an ubiquitin-like conjugating system involving also ATG7 as an E1-like activating enzyme and ATG10 as an E2-like conjugating enzyme, is essential for its function. ATG12/ATG5 conjugate has an essential role in plant nutrient recycling.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8S924|AT12A_ARATH Ubiquitin-like protein ATG12A OS=Arabidopsis thaliana GN=ATG12A PE=2 SV=1

 Score =  162 bits (411), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 76/92 (82%), Positives = 83/92 (90%)

Query: 4  TDSPSSTRKVVVHFRATGGAPILKQAKFKISGSDKFAKVIEFLCRHLGRETLFVYVNSAF 63
          + SPSS RKVVVH RATGGAPILKQ+KFKI G+DKFAKVI+FL R L  ++LFVYVNSAF
Sbjct: 5  SSSPSSVRKVVVHLRATGGAPILKQSKFKIPGTDKFAKVIDFLRRQLHSDSLFVYVNSAF 64

Query: 64 SPNPDELVIDLYNNFGFDGKLIVNYACSMAWG 95
          SPNPDE VIDLYNNFGFDGKL+VNYACSMAWG
Sbjct: 65 SPNPDESVIDLYNNFGFDGKLVVNYACSMAWG 96

Ubiquitin-like protein involved in cytoplasm to vacuole transport (Cvt) and autophagy vesicles formation. Conjugation with ATG5 through an ubiquitin-like conjugating system involving also ATG7 as an E1-like activating enzyme and ATG10 as an E2-like conjugating enzyme, is essential for its function. ATG12/ATG5 conjugate has an essential role in plant nutrient recycling.

Arabidopsis thaliana (taxid: 3702)

>sp|Q69NP0|ATG12_ORYSJ Ubiquitin-like protein ATG12 OS=Oryza sativa subsp. japonica GN=ATG12 PE=3 SV=2

 Score =  140 bits (354), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 64/95 (67%), Positives = 80/95 (84%), Gaps = 2/95 (2%)

Query: 1  MAATDSPSSTRKVVVHFRATGGAPILKQAKFKISGSDKFAKVIEFLCRHLGRETLFVYVN 60
          MAA    +  +KVVVHFR+TG AP LKQ+KFKI G++KF K+I+FL R + ++T+F+YVN
Sbjct: 1  MAAV--AAEQKKVVVHFRSTGNAPQLKQSKFKIGGNEKFLKIIDFLRRQIHQDTVFLYVN 58

Query: 61 SAFSPNPDELVIDLYNNFGFDGKLIVNYACSMAWG 95
          SAFSPNPDEL+IDLYNNFG DG+L+VNYA SMAWG
Sbjct: 59 SAFSPNPDELIIDLYNNFGIDGQLVVNYASSMAWG 93

Ubiquitin-like protein involved in cytoplasm to vacuole transport (Cvt) and autophagy vesicles formation. Conjugation with ATG5 through an ubiquitin-like conjugating system is essential for its function. ATG12/ATG5 conjugate has an essential role in plant nutrient recycling.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|A2YAG8|ATG12_ORYSI Ubiquitin-like protein ATG12 OS=Oryza sativa subsp. indica GN=ATG12 PE=3 SV=2

 Score =  140 bits (354), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 64/95 (67%), Positives = 80/95 (84%), Gaps = 2/95 (2%)

Query: 1  MAATDSPSSTRKVVVHFRATGGAPILKQAKFKISGSDKFAKVIEFLCRHLGRETLFVYVN 60
          MAA    +  +KVVVHFR+TG AP LKQ+KFKI G++KF K+I+FL R + ++T+F+YVN
Sbjct: 1  MAAV--AAEQKKVVVHFRSTGNAPQLKQSKFKIGGNEKFLKIIDFLRRQIHQDTVFLYVN 58

Query: 61 SAFSPNPDELVIDLYNNFGFDGKLIVNYACSMAWG 95
          SAFSPNPDEL+IDLYNNFG DG+L+VNYA SMAWG
Sbjct: 59 SAFSPNPDELIIDLYNNFGIDGQLVVNYASSMAWG 93

Ubiquitin-like protein involved in cytoplasm to vacuole transport (Cvt) and autophagy vesicles formation. Conjugation with ATG5 through an ubiquitin-like conjugating system is essential for its function. ATG12/ATG5 conjugate has an essential role in plant nutrient recycling.

Oryza sativa subsp. indica (taxid: 39946)

>sp|P0CM28|ATG12_CRYNJ Ubiquitin-like protein ATG12 OS=Cryptococcus neoformans var. neoformans serotype D (strain JEC21 / ATCC MYA-565) GN=ATG12 PE=3 SV=1

 Score = 88.2 bits (217), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 44/94 (46%), Positives = 61/94 (64%), Gaps = 4/94 (4%)

Query: 6   SPSSTRK-VVVHFRATGGAPILKQAKFKISGSDKFAKVIEFLCRHLG---RETLFVYVNS 61
           SP+  +  VVV F++ G API+K   FK +   KF  VI FL + LG    ++LF Y+N+
Sbjct: 12  SPAQAQPAVVVRFKSIGSAPIMKNNVFKATAGHKFQAVIMFLRQQLGMKKEDSLFTYINA 71

Query: 62  AFSPNPDELVIDLYNNFGFDGKLIVNYACSMAWG 95
           AF+P PD+ V  LY +FG +G LIVNY+ + AWG
Sbjct: 72  AFAPAPDDTVGSLYKSFGTEGHLIVNYSNTQAWG 105

Ubiquitin-like protein involved in the cytoplasm to vacuole transport (Cvt) and autophagy. Conjugated to ATG5.

Cryptococcus neoformans var. neoformans serotype D (strain JEC21 / ATCC MYA-565) (taxid: 214684)

>sp|P0CM29|ATG12_CRYNB Ubiquitin-like protein ATG12 OS=Cryptococcus neoformans var. neoformans serotype D (strain B-3501A) GN=ATG12 PE=3 SV=1

 Score = 88.2 bits (217), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 44/94 (46%), Positives = 61/94 (64%), Gaps = 4/94 (4%)

Query: 6   SPSSTRK-VVVHFRATGGAPILKQAKFKISGSDKFAKVIEFLCRHLG---RETLFVYVNS 61
           SP+  +  VVV F++ G API+K   FK +   KF  VI FL + LG    ++LF Y+N+
Sbjct: 12  SPAQAQPAVVVRFKSIGSAPIMKNNVFKATAGHKFQAVIMFLRQQLGMKKEDSLFTYINA 71

Query: 62  AFSPNPDELVIDLYNNFGFDGKLIVNYACSMAWG 95
           AF+P PD+ V  LY +FG +G LIVNY+ + AWG
Sbjct: 72  AFAPAPDDTVGSLYKSFGTEGHLIVNYSNTQAWG 105

Ubiquitin-like protein involved in the cytoplasm to vacuole transport (Cvt) and autophagy. Conjugated to ATG5.

Cryptococcus neoformans var. neoformans serotype D (strain B-3501A) (taxid: 283643)

>sp|Q9US24|ATG12_SCHPO Ubiquitin-like protein ATG12 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=atg12 PE=3 SV=1

 Score = 85.1 bits (209), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 38/90 (42%), Positives = 60/90 (66%), Gaps = 3/90 (3%)

Query: 9   STRKVVVHFRATGGAPILKQAKFKISGSDKFAKVIEFLCRHLG---RETLFVYVNSAFSP 65
             R+V + F+A G  P+L++  F I+ S +F KV  FL + LG     +L +YVNS+F+P
Sbjct: 43  ENRRVNLRFKAIGRTPLLRKTVFSINASQRFEKVTRFLKKELGLPMNSSLVLYVNSSFAP 102

Query: 66  NPDELVIDLYNNFGFDGKLIVNYACSMAWG 95
           +PDE+V +LY+NF  D  L++NY  ++A+G
Sbjct: 103 SPDEIVGNLYDNFAIDSHLLINYCINVAFG 132

Ubiquitin-like protein involved in the cytoplasm to vacuole transport (Cvt) and autophagy. Conjugated to ATG5.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|Q86CR6|ATG12_DICDI Ubiquitin-like protein atg12 OS=Dictyostelium discoideum GN=atg12 PE=3 SV=1

 Score = 84.0 bits (206), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 39/91 (42%), Positives = 58/91 (63%), Gaps = 3/91 (3%)

Query: 8   SSTRKVVVHFRATGGAPILKQAKFKISGSDKFAKVIEFLCRHL---GRETLFVYVNSAFS 64
           +S  K++V+F+  GGA  LKQ KFKI  +  F  VI+ L   L     E+LF+++N  F 
Sbjct: 34  TSESKIIVYFKNAGGAQPLKQKKFKIQANVSFQNVIDKLRGQLKLKSNESLFLFINQVFQ 93

Query: 65  PNPDELVIDLYNNFGFDGKLIVNYACSMAWG 95
           P+PDE++ +LY  F  + +LI+NY+  MAWG
Sbjct: 94  PSPDEILGELYKCFSHNDQLIINYSLQMAWG 124

Ubiquitin-like protein involved in autophagy vesicles formation. Required for atg8 association to the vesicle membranes. Conjugated to atg5 through an ubiquitin-like conjugating system involving also atg7 as an E1-like activating enzyme is essential for its function.

Dictyostelium discoideum (taxid: 44689)

>sp|Q2TBJ5|ATG12_RAT Ubiquitin-like protein ATG12 OS=Rattus norvegicus GN=Atg12 PE=2 SV=1

 Score = 76.6 bits (187), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 37/95 (38%), Positives = 57/95 (60%), Gaps = 4/95 (4%)

Query: 5   DSPSSTRKVV-VHFRATGGAPILKQAKFKISGSDKFAKVIEFL---CRHLGRETLFVYVN 60
           + P  T+K + +  +A G  PI+K  K+ +  +     +I+F+    R L  E LF+YVN
Sbjct: 47  EPPGDTKKKIDILLKAVGDTPIMKTKKWAVERTRTVQALIDFIRKFLRLLASEQLFIYVN 106

Query: 61  SAFSPNPDELVIDLYNNFGFDGKLIVNYACSMAWG 95
            +F+P+PD+ V  LY  FG DGKL+++Y  S AWG
Sbjct: 107 QSFAPSPDQEVGTLYECFGSDGKLVLHYCKSQAWG 141

Ubiquitin-like protein required for autophagy. Conjugated to ATG3 and ATG5.

Rattus norvegicus (taxid: 10116)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	95
357513953	95	Autophagy-like protein [Medicago truncat	1.0	1.0	0.842	2e-41
225442140	94	PREDICTED: ubiquitin-like isoform 1 [Vit	0.978	0.989	0.870	4e-41
388497554	94	unknown [Lotus japonicus]	0.978	0.989	0.838	4e-40
351722369	94	uncharacterized protein LOC100527905 [Gl	0.978	0.989	0.827	2e-39
351725679	94	uncharacterized protein LOC100527733 [Gl	0.978	0.989	0.817	2e-39
30682920	94	ubiquitin-like protein ATG12B [Arabidops	0.978	0.989	0.806	1e-38
71041908	96	Chain A, The Crystal Structure Of Plant	0.978	0.968	0.806	2e-38
15221755	96	ubiquitin-like protein ATG12A [Arabidops	0.968	0.958	0.826	2e-38
297834236	94	APG12/APG12B [Arabidopsis lyrata subsp.	0.978	0.989	0.795	7e-38
297847830	96	ATG12a [Arabidopsis lyrata subsp. lyrata	0.968	0.958	0.815	8e-38

>gi|357513953|ref|XP_003627265.1| Autophagy-like protein [Medicago truncatula] gi|122187475|sp|Q1SF86.1|ATG12_MEDTR RecName: Full=Ubiquitin-like protein ATG12; AltName: Full=Autophagy-related protein 12; Short=APG12-like gi|355521287|gb|AET01741.1| Autophagy-like protein [Medicago truncatula]

 Score =  172 bits (436), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 80/95 (84%), Positives = 88/95 (92%)

Query: 1  MAATDSPSSTRKVVVHFRATGGAPILKQAKFKISGSDKFAKVIEFLCRHLGRETLFVYVN 60
          MAA +SP+S RKVVVH RATG APILKQ+KFKI+G+DKFAKVI+FL R L RE+LFVYVN
Sbjct: 1  MAAAESPTSVRKVVVHLRATGDAPILKQSKFKIAGTDKFAKVIDFLRRQLHRESLFVYVN 60

Query: 61 SAFSPNPDELVIDLYNNFGFDGKLIVNYACSMAWG 95
          SAFSPNPDELVIDLYNNFGFDGKL+VNYACSMAWG
Sbjct: 61 SAFSPNPDELVIDLYNNFGFDGKLVVNYACSMAWG 95

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225442140|ref|XP_002275073.1| PREDICTED: ubiquitin-like isoform 1 [Vitis vinifera] gi|359482638|ref|XP_003632796.1| PREDICTED: ubiquitin-like isoform 2 [Vitis vinifera] gi|297743012|emb|CBI35879.3| unnamed protein product [Vitis vinifera]

 Score =  171 bits (434), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 81/93 (87%), Positives = 86/93 (92%)

Query: 3  ATDSPSSTRKVVVHFRATGGAPILKQAKFKISGSDKFAKVIEFLCRHLGRETLFVYVNSA 62
          A++SPSS RKVVVH RATG APILKQAKFKI G+DKFAKVIEFL R L R+TLFVYVNSA
Sbjct: 2  ASESPSSARKVVVHLRATGDAPILKQAKFKIPGTDKFAKVIEFLRRQLHRDTLFVYVNSA 61

Query: 63 FSPNPDELVIDLYNNFGFDGKLIVNYACSMAWG 95
          FSPNPDELVIDLYNNFGFDGKL+VNYACSMAWG
Sbjct: 62 FSPNPDELVIDLYNNFGFDGKLVVNYACSMAWG 94

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388497554|gb|AFK36843.1| unknown [Lotus japonicus]

 Score =  168 bits (425), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 78/93 (83%), Positives = 86/93 (92%)

Query: 3  ATDSPSSTRKVVVHFRATGGAPILKQAKFKISGSDKFAKVIEFLCRHLGRETLFVYVNSA 62
          + +SPSS RKVVVH RATG APILKQ+KFKI+G+DKFAKVI+FL R L R+TLFVYVNSA
Sbjct: 2  SVESPSSVRKVVVHLRATGDAPILKQSKFKIAGTDKFAKVIDFLRRQLHRDTLFVYVNSA 61

Query: 63 FSPNPDELVIDLYNNFGFDGKLIVNYACSMAWG 95
          FSPNPDEL+IDLYNNFGFDGKLIVNYACSMAWG
Sbjct: 62 FSPNPDELIIDLYNNFGFDGKLIVNYACSMAWG 94

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351722369|ref|NP_001235450.1| uncharacterized protein LOC100527905 [Glycine max] gi|255633518|gb|ACU17117.1| unknown [Glycine max]

 Score =  166 bits (420), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 77/93 (82%), Positives = 86/93 (92%)

Query: 3  ATDSPSSTRKVVVHFRATGGAPILKQAKFKISGSDKFAKVIEFLCRHLGRETLFVYVNSA 62
          +++ PSS RKVVVH RATG APILKQ+KFKI+G+DKFAKVI+FL R L RETLFVYVNSA
Sbjct: 2  SSELPSSVRKVVVHLRATGDAPILKQSKFKIAGTDKFAKVIDFLRRQLHRETLFVYVNSA 61

Query: 63 FSPNPDELVIDLYNNFGFDGKLIVNYACSMAWG 95
          FSPNPDELVIDL+NNFGFDGKL+VNYACSMAWG
Sbjct: 62 FSPNPDELVIDLFNNFGFDGKLVVNYACSMAWG 94

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351725679|ref|NP_001236589.1| uncharacterized protein LOC100527733 [Glycine max] gi|255633072|gb|ACU16891.1| unknown [Glycine max]

 Score =  166 bits (419), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 76/93 (81%), Positives = 85/93 (91%)

Query: 3  ATDSPSSTRKVVVHFRATGGAPILKQAKFKISGSDKFAKVIEFLCRHLGRETLFVYVNSA 62
          + +SPSS RKVVVH RATG  PILKQ+KFKI+G+DKFAKVI+FL R L RETLFVY+NSA
Sbjct: 2  SAESPSSARKVVVHLRATGDVPILKQSKFKIAGTDKFAKVIDFLRRQLHRETLFVYINSA 61

Query: 63 FSPNPDELVIDLYNNFGFDGKLIVNYACSMAWG 95
          FSPNPDELVIDL+NNFGFDGKL+VNYACSMAWG
Sbjct: 62 FSPNPDELVIDLFNNFGFDGKLVVNYACSMAWG 94

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|30682920|ref|NP_188013.2| ubiquitin-like protein ATG12B [Arabidopsis thaliana] gi|75274385|sp|Q9LVK3.1|AT12B_ARATH RecName: Full=Ubiquitin-like protein ATG12B; AltName: Full=Autophagy-related protein 12b; Short=APG12-like protein b; Short=AtAPG12b gi|11994368|dbj|BAB02327.1| unnamed protein product [Arabidopsis thaliana] gi|19912171|dbj|BAB88397.1| autophagy 12b [Arabidopsis thaliana] gi|26452994|dbj|BAC43573.1| putative autophagy 12b AtAPG12b [Arabidopsis thaliana] gi|88900332|gb|ABD57478.1| At3g13970 [Arabidopsis thaliana] gi|332641925|gb|AEE75446.1| ubiquitin-like protein ATG12B [Arabidopsis thaliana]

 Score =  163 bits (413), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 75/93 (80%), Positives = 85/93 (91%)

Query: 3  ATDSPSSTRKVVVHFRATGGAPILKQAKFKISGSDKFAKVIEFLCRHLGRETLFVYVNSA 62
          AT+SP+S +K+VVH RATGGAPILKQ+KFK+SGSDKFA VI+FL R L  ++LFVYVNSA
Sbjct: 2  ATESPNSVQKIVVHLRATGGAPILKQSKFKVSGSDKFANVIDFLRRQLHSDSLFVYVNSA 61

Query: 63 FSPNPDELVIDLYNNFGFDGKLIVNYACSMAWG 95
          FSPNPDE VIDLYNNFGFDGKL+VNYACSMAWG
Sbjct: 62 FSPNPDESVIDLYNNFGFDGKLVVNYACSMAWG 94

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|71041908|pdb|1WZ3|A Chain A, The Crystal Structure Of Plant Atg12 gi|71041909|pdb|1WZ3|B Chain B, The Crystal Structure Of Plant Atg12

 Score =  163 bits (412), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 75/93 (80%), Positives = 85/93 (91%)

Query: 3  ATDSPSSTRKVVVHFRATGGAPILKQAKFKISGSDKFAKVIEFLCRHLGRETLFVYVNSA 62
          AT+SP+S +K+VVH RATGGAPILKQ+KFK+SGSDKFA VI+FL R L  ++LFVYVNSA
Sbjct: 4  ATESPNSVQKIVVHLRATGGAPILKQSKFKVSGSDKFANVIDFLRRQLHSDSLFVYVNSA 63

Query: 63 FSPNPDELVIDLYNNFGFDGKLIVNYACSMAWG 95
          FSPNPDE VIDLYNNFGFDGKL+VNYACSMAWG
Sbjct: 64 FSPNPDESVIDLYNNFGFDGKLVVNYACSMAWG 96

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15221755|ref|NP_175823.1| ubiquitin-like protein ATG12A [Arabidopsis thaliana] gi|75160541|sp|Q8S924.1|AT12A_ARATH RecName: Full=Ubiquitin-like protein ATG12A; AltName: Full=Autophagy-related protein 12a; Short=APG12-like protein a; Short=AtAPG12a gi|21636954|gb|AAM70187.1|AF492758_1 autophagy APG12 [Arabidopsis thaliana] gi|19912169|dbj|BAB88396.1| autophagy 12a [Arabidopsis thaliana] gi|88900334|gb|ABD57479.1| At1g54210 [Arabidopsis thaliana] gi|332194940|gb|AEE33061.1| ubiquitin-like protein ATG12A [Arabidopsis thaliana]

 Score =  162 bits (411), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 76/92 (82%), Positives = 83/92 (90%)

Query: 4  TDSPSSTRKVVVHFRATGGAPILKQAKFKISGSDKFAKVIEFLCRHLGRETLFVYVNSAF 63
          + SPSS RKVVVH RATGGAPILKQ+KFKI G+DKFAKVI+FL R L  ++LFVYVNSAF
Sbjct: 5  SSSPSSVRKVVVHLRATGGAPILKQSKFKIPGTDKFAKVIDFLRRQLHSDSLFVYVNSAF 64

Query: 64 SPNPDELVIDLYNNFGFDGKLIVNYACSMAWG 95
          SPNPDE VIDLYNNFGFDGKL+VNYACSMAWG
Sbjct: 65 SPNPDESVIDLYNNFGFDGKLVVNYACSMAWG 96

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297834236|ref|XP_002885000.1| APG12/APG12B [Arabidopsis lyrata subsp. lyrata] gi|297330840|gb|EFH61259.1| APG12/APG12B [Arabidopsis lyrata subsp. lyrata]

 Score =  160 bits (406), Expect = 7e-38,   Method: Compositional matrix adjust.
 Identities = 74/93 (79%), Positives = 85/93 (91%)

Query: 3  ATDSPSSTRKVVVHFRATGGAPILKQAKFKISGSDKFAKVIEFLCRHLGRETLFVYVNSA 62
          AT+SP+S RK+VVH RATGGA ILKQ+KFKI+G++KFAKVI+FL R L  ++LFVYVNSA
Sbjct: 2  ATESPNSVRKIVVHLRATGGASILKQSKFKIAGTEKFAKVIDFLRRQLHSDSLFVYVNSA 61

Query: 63 FSPNPDELVIDLYNNFGFDGKLIVNYACSMAWG 95
          FSPNPDE VIDLYNNFGFDGKL+VNYACSMAWG
Sbjct: 62 FSPNPDESVIDLYNNFGFDGKLVVNYACSMAWG 94

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297847830|ref|XP_002891796.1| ATG12a [Arabidopsis lyrata subsp. lyrata] gi|297337638|gb|EFH68055.1| ATG12a [Arabidopsis lyrata subsp. lyrata]

 Score =  160 bits (406), Expect = 8e-38,   Method: Compositional matrix adjust.
 Identities = 75/92 (81%), Positives = 82/92 (89%)

Query: 4  TDSPSSTRKVVVHFRATGGAPILKQAKFKISGSDKFAKVIEFLCRHLGRETLFVYVNSAF 63
          + SP S RKVVVH RATGGAPILKQ+KFKI G+DKFAKVI+FL R L  ++LFVYVNSAF
Sbjct: 5  SSSPGSVRKVVVHLRATGGAPILKQSKFKIPGTDKFAKVIDFLRRQLRSDSLFVYVNSAF 64

Query: 64 SPNPDELVIDLYNNFGFDGKLIVNYACSMAWG 95
          SPNPDE VIDLYNNFGFDGKL+VNYACSMAWG
Sbjct: 65 SPNPDESVIDLYNNFGFDGKLVVNYACSMAWG 96

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	95
TAIR|locus:2088182	94	APG12B "AUTOPHAGY 12 B" [Arabi	0.978	0.989	0.806	8.9e-38
TAIR|locus:2020098	96	ATG12A "AUTOPHAGY 12 A" [Arabi	0.968	0.958	0.826	2.4e-37
POMBASE|SPAC1783.06c	132	atg12 "autophagy associated ub	0.894	0.643	0.431	4.7e-16
DICTYBASE|DDB_G0282929	124	atg12 "autophagy protein 12" [	0.926	0.709	0.428	9.8e-16
RGD|1306306	141	Atg12 "autophagy related 12" [	0.957	0.645	0.389	6.2e-14
UNIPROTKB|E2R3U3	163	ATG12 "Uncharacterized protein	0.968	0.564	0.381	1.3e-13
MGI|MGI:1914776	141	Atg12 "autophagy related 12" [	0.957	0.645	0.378	1.3e-13
UNIPROTKB|C1IDX9	187	ATG12 "Atg12" [Homo sapiens (t	0.968	0.491	0.371	1.6e-13
UNIPROTKB|O94817	140	ATG12 "Ubiquitin-like protein	0.968	0.657	0.371	1.6e-13
UNIPROTKB|D7RA34	140	ATG12 "Autophagy related 12-li	0.968	0.657	0.371	1.6e-13

TAIR|locus:2088182 APG12B "AUTOPHAGY 12 B" [Arabidopsis thaliana (taxid:3702)]

 Score = 405 (147.6 bits), Expect = 8.9e-38, P = 8.9e-38
 Identities = 75/93 (80%), Positives = 85/93 (91%)

Query:     3 ATDSPSSTRKVVVHFRATGGAPILKQAKFKISGSDKFAKVIEFLCRHLGRETLFVYVNSA 62
             AT+SP+S +K+VVH RATGGAPILKQ+KFK+SGSDKFA VI+FL R L  ++LFVYVNSA
Sbjct:     2 ATESPNSVQKIVVHLRATGGAPILKQSKFKVSGSDKFANVIDFLRRQLHSDSLFVYVNSA 61

Query:    63 FSPNPDELVIDLYNNFGFDGKLIVNYACSMAWG 95
             FSPNPDE VIDLYNNFGFDGKL+VNYACSMAWG
Sbjct:    62 FSPNPDESVIDLYNNFGFDGKLVVNYACSMAWG 94

GO:0000045 "autophagic vacuole assembly" evidence=IEA

GO:0003674 "molecular_function" evidence=ND

GO:0005737 "cytoplasm" evidence=IEA

GO:0006914 "autophagy" evidence=IGI;ISS

GO:0009507 "chloroplast" evidence=ISM

TAIR|locus:2020098 ATG12A "AUTOPHAGY 12 A" [Arabidopsis thaliana (taxid:3702)]

 Score = 401 (146.2 bits), Expect = 2.4e-37, P = 2.4e-37
 Identities = 76/92 (82%), Positives = 83/92 (90%)

Query:     4 TDSPSSTRKVVVHFRATGGAPILKQAKFKISGSDKFAKVIEFLCRHLGRETLFVYVNSAF 63
             + SPSS RKVVVH RATGGAPILKQ+KFKI G+DKFAKVI+FL R L  ++LFVYVNSAF
Sbjct:     5 SSSPSSVRKVVVHLRATGGAPILKQSKFKIPGTDKFAKVIDFLRRQLHSDSLFVYVNSAF 64

Query:    64 SPNPDELVIDLYNNFGFDGKLIVNYACSMAWG 95
             SPNPDE VIDLYNNFGFDGKL+VNYACSMAWG
Sbjct:    65 SPNPDESVIDLYNNFGFDGKLVVNYACSMAWG 96

GO:0000045 "autophagic vacuole assembly" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0006914 "autophagy" evidence=IGI;ISS

GO:0009507 "chloroplast" evidence=ISM

GO:0042787 "protein ubiquitination involved in ubiquitin-dependent protein catabolic process" evidence=ISS

GO:0006661 "phosphatidylinositol biosynthetic process" evidence=RCA

POMBASE|SPAC1783.06c atg12 "autophagy associated ubiquitin-like modifier Atg12" [Schizosaccharomyces pombe (taxid:4896)]

 Score = 200 (75.5 bits), Expect = 4.7e-16, P = 4.7e-16
 Identities = 38/88 (43%), Positives = 60/88 (68%)

Query:    11 RKVVVHFRATGGAPILKQAKFKISGSDKFAKVIEFLCRHLG---RETLFVYVNSAFSPNP 67
             R+V + F+A G  P+L++  F I+ S +F KV  FL + LG     +L +YVNS+F+P+P
Sbjct:    45 RRVNLRFKAIGRTPLLRKTVFSINASQRFEKVTRFLKKELGLPMNSSLVLYVNSSFAPSP 104

Query:    68 DELVIDLYNNFGFDGKLIVNYACSMAWG 95
             DE+V +LY+NF  D  L++NY  ++A+G
Sbjct:   105 DEIVGNLYDNFAIDSHLLINYCINVAFG 132

GO:0000045 "autophagic vacuole assembly" evidence=ISM

GO:0005634 "nucleus" evidence=IDA

GO:0005737 "cytoplasm" evidence=ISM

GO:0005829 "cytosol" evidence=IDA

GO:0006501 "C-terminal protein lipidation" evidence=ISO

GO:0006914 "autophagy" evidence=IMP

GO:0006995 "cellular response to nitrogen starvation" evidence=IMP

GO:0016236 "macroautophagy" evidence=IC

GO:0030437 "ascospore formation" evidence=IMP

GO:0031386 "protein tag" evidence=ISO

GO:0032258 "CVT pathway" evidence=ISO

GO:0019776 "Atg8 ligase activity" evidence=ISO

DICTYBASE|DDB_G0282929 atg12 "autophagy protein 12" [Dictyostelium discoideum (taxid:44689)]

 Score = 197 (74.4 bits), Expect = 9.8e-16, P = 9.8e-16
 Identities = 39/91 (42%), Positives = 58/91 (63%)

Query:     8 SSTRKVVVHFRATGGAPILKQAKFKISGSDKFAKVIEFLCRHL---GRETLFVYVNSAFS 64
             +S  K++V+F+  GGA  LKQ KFKI  +  F  VI+ L   L     E+LF+++N  F 
Sbjct:    34 TSESKIIVYFKNAGGAQPLKQKKFKIQANVSFQNVIDKLRGQLKLKSNESLFLFINQVFQ 93

Query:    65 PNPDELVIDLYNNFGFDGKLIVNYACSMAWG 95
             P+PDE++ +LY  F  + +LI+NY+  MAWG
Sbjct:    94 PSPDEILGELYKCFSHNDQLIINYSLQMAWG 124

GO:0016236 "macroautophagy" evidence=ISS

GO:0005737 "cytoplasm" evidence=IEA

GO:0000045 "autophagic vacuole assembly" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0006914 "autophagy" evidence=IEA

GO:0006810 "transport" evidence=IEA

RGD|1306306 Atg12 "autophagy related 12" [Rattus norvegicus (taxid:10116)]

 Score = 180 (68.4 bits), Expect = 6.2e-14, P = 6.2e-14
 Identities = 37/95 (38%), Positives = 57/95 (60%)

Query:     5 DSPSSTRKVV-VHFRATGGAPILKQAKFKISGSDKFAKVIEFL---CRHLGRETLFVYVN 60
             + P  T+K + +  +A G  PI+K  K+ +  +     +I+F+    R L  E LF+YVN
Sbjct:    47 EPPGDTKKKIDILLKAVGDTPIMKTKKWAVERTRTVQALIDFIRKFLRLLASEQLFIYVN 106

Query:    61 SAFSPNPDELVIDLYNNFGFDGKLIVNYACSMAWG 95
              +F+P+PD+ V  LY  FG DGKL+++Y  S AWG
Sbjct:   107 QSFAPSPDQEVGTLYECFGSDGKLVLHYCKSQAWG 141

GO:0000045 "autophagic vacuole assembly" evidence=IEA;ISO

GO:0005515 "protein binding" evidence=IPI

GO:0006914 "autophagy" evidence=IMP

GO:0016020 "membrane" evidence=IDA

GO:0034045 "pre-autophagosomal structure membrane" evidence=IEA;ISO

GO:0043234 "protein complex" evidence=IDA

UNIPROTKB|E2R3U3 ATG12 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 177 (67.4 bits), Expect = 1.3e-13, P = 1.3e-13
 Identities = 37/97 (38%), Positives = 59/97 (60%)

Query:     4 TDSPS--STRKVVVHFRATGGAPILKQAKFKISGSDKFAKVIEFLCRHL---GRETLFVY 58
             T+ P+  + +K+ V  +A G  PI+K  K+ +  +     +I+F+ + L     E LF+Y
Sbjct:    67 TEEPAGDTKKKIDVLLKAVGDTPIMKTKKWAVERTRTIQGLIDFIKKFLKLVASEQLFIY 126

Query:    59 VNSAFSPNPDELVIDLYNNFGFDGKLIVNYACSMAWG 95
             VN +F+P+PD+ V  LY  FG DGKL+++Y  S AWG
Sbjct:   127 VNQSFAPSPDQEVGTLYECFGSDGKLVLHYCKSQAWG 163

GO:0034045 "pre-autophagosomal structure membrane" evidence=IEA

GO:0000045 "autophagic vacuole assembly" evidence=IEA

MGI|MGI:1914776 Atg12 "autophagy related 12" [Mus musculus (taxid:10090)]

 Score = 177 (67.4 bits), Expect = 1.3e-13, P = 1.3e-13
 Identities = 36/95 (37%), Positives = 57/95 (60%)

Query:     5 DSPSSTRKVV-VHFRATGGAPILKQAKFKISGSDKFAKVIEFLCRHL---GRETLFVYVN 60
             + P  T+K + +  +A G  PI+K  K+ +  +     +I+F+ + L     E LF+YVN
Sbjct:    47 EPPGDTKKKIDILLKAVGDTPIMKTKKWAVERTRTIQGLIDFIKKFLKLVASEQLFIYVN 106

Query:    61 SAFSPNPDELVIDLYNNFGFDGKLIVNYACSMAWG 95
              +F+P+PD+ V  LY  FG DGKL+++Y  S AWG
Sbjct:   107 QSFAPSPDQEVGTLYECFGSDGKLVLHYCKSQAWG 141

GO:0000045 "autophagic vacuole assembly" evidence=IMP

GO:0005515 "protein binding" evidence=IPI

GO:0005737 "cytoplasm" evidence=IEA

GO:0006914 "autophagy" evidence=ISO;TAS

GO:0016020 "membrane" evidence=ISO

GO:0034045 "pre-autophagosomal structure membrane" evidence=IDA

GO:0043234 "protein complex" evidence=ISO

UNIPROTKB|C1IDX9 ATG12 "Atg12" [Homo sapiens (taxid:9606)]

 Score = 176 (67.0 bits), Expect = 1.6e-13, P = 1.6e-13
 Identities = 36/97 (37%), Positives = 59/97 (60%)

Query:     4 TDSPS--STRKVVVHFRATGGAPILKQAKFKISGSDKFAKVIEFLCRHL---GRETLFVY 58
             T+ P+  + +K+ +  +A G  PI+K  K+ +  +     +I+F+ + L     E LF+Y
Sbjct:    91 TEEPAGDTKKKIDILLKAVGDTPIMKTKKWAVERTRTIQGLIDFIKKFLKLVASEQLFIY 150

Query:    59 VNSAFSPNPDELVIDLYNNFGFDGKLIVNYACSMAWG 95
             VN +F+P+PD+ V  LY  FG DGKL+++Y  S AWG
Sbjct:   151 VNQSFAPSPDQEVGTLYECFGSDGKLVLHYCKSQAWG 187

GO:0000045 "autophagic vacuole assembly" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

UNIPROTKB|O94817 ATG12 "Ubiquitin-like protein ATG12" [Homo sapiens (taxid:9606)]

 Score = 176 (67.0 bits), Expect = 1.6e-13, P = 1.6e-13
 Identities = 36/97 (37%), Positives = 59/97 (60%)

Query:     4 TDSPS--STRKVVVHFRATGGAPILKQAKFKISGSDKFAKVIEFLCRHL---GRETLFVY 58
             T+ P+  + +K+ +  +A G  PI+K  K+ +  +     +I+F+ + L     E LF+Y
Sbjct:    44 TEEPAGDTKKKIDILLKAVGDTPIMKTKKWAVERTRTIQGLIDFIKKFLKLVASEQLFIY 103

Query:    59 VNSAFSPNPDELVIDLYNNFGFDGKLIVNYACSMAWG 95
             VN +F+P+PD+ V  LY  FG DGKL+++Y  S AWG
Sbjct:   104 VNQSFAPSPDQEVGTLYECFGSDGKLVLHYCKSQAWG 140

GO:0043234 "protein complex" evidence=IEA

GO:0000045 "autophagic vacuole assembly" evidence=ISS

GO:0034045 "pre-autophagosomal structure membrane" evidence=ISS

GO:0005515 "protein binding" evidence=IPI

GO:0032480 "negative regulation of type I interferon production" evidence=TAS

GO:0045087 "innate immune response" evidence=TAS

UNIPROTKB|D7RA34 ATG12 "Autophagy related 12-like protein" [Sus scrofa (taxid:9823)]

 Score = 176 (67.0 bits), Expect = 1.6e-13, P = 1.6e-13
 Identities = 36/97 (37%), Positives = 59/97 (60%)

Query:     4 TDSPS--STRKVVVHFRATGGAPILKQAKFKISGSDKFAKVIEFLCRHL---GRETLFVY 58
             T+ P+  + +K+ +  +A G  PI+K  K+ +  +     +I+F+ + L     E LF+Y
Sbjct:    44 TEEPAGDTKKKIDILLKAVGDTPIMKTKKWAVERTRTIQGLIDFIKKFLKLVASEQLFIY 103

Query:    59 VNSAFSPNPDELVIDLYNNFGFDGKLIVNYACSMAWG 95
             VN +F+P+PD+ V  LY  FG DGKL+++Y  S AWG
Sbjct:   104 VNQSFAPSPDQEVGTLYECFGSDGKLVLHYCKSQAWG 140

GO:0034045 "pre-autophagosomal structure membrane" evidence=IEA

GO:0000045 "autophagic vacuole assembly" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P0CM28	ATG12_CRYNJ	No assigned EC number	0.4680	0.9473	0.8571	yes	no
Q8S924	AT12A_ARATH	No assigned EC number	0.8260	0.9684	0.9583	no	no
A2YAG8	ATG12_ORYSI	No assigned EC number	0.6736	0.9789	1.0	N/A	no
Q9VTU1	APG12_DROME	No assigned EC number	0.3173	1.0	0.8558	yes	no
Q1SF86	ATG12_MEDTR	No assigned EC number	0.8421	1.0	1.0	N/A	no
Q69NP0	ATG12_ORYSJ	No assigned EC number	0.6736	0.9789	1.0	yes	no
Q9LVK3	AT12B_ARATH	No assigned EC number	0.8064	0.9789	0.9893	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	APG12B	APG12B (AUTOPHAGY 12 B); AUTOPHAGY 12 B (APG12B); FUNCTIONS IN- molecular_function unknown; INVOLVED IN- autophagy, autophagic vacuole formation; LOCATED IN- cytoplasm; EXPRESSED IN- male gametophyte, pollen tube; EXPRESSED DURING- L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s- Autophagy protein 12 (InterPro-IPR007242); BEST Arabidopsis thaliana protein match is- ATG12A (AUTOPHAGY 12 A); protein binding (TAIR-AT1G54210.1); Has 228 Blast hits to 228 proteins in 111 species- Archae - 0; Bacteria - 0; Metazoa - 96; Fungi - 96; Plants - 30; Viruses - 0; Other [...] (94 aa)
		(Arabidopsis thaliana)
Predicted Functional Partners:
	APG7	APG7 (AUTOPHAGY 7); APG8 activating enzyme; Component of autophagy conjugation pathway. Require [...] (697 aa)					•	•	•		0.966
	APG8A	APG8A (AUTOPHAGY 8A); APG8 activating enzyme/ APG8-specific protease/ Atg8 ligase; Encodes APG8 [...] (137 aa)				•			•		0.907
	ATG10	ATG10 (autophagy 10); transporter/ ubiquitin activating enzyme; Encodes an E1 ligase involved i [...] (226 aa)					•		•		0.890
	APG9	APG9 (autophagy 9); Involved in autophagy, the process of vacuolar bulk degradation of cytoplas [...] (866 aa)							•		0.790
	APG8H	APG8H (AUTOPHAGY 8H); APG8 activating enzyme/ APG8-specific protease/ Atg8 ligase/ microtubule [...] (115 aa)							•		0.744
	ATG3	ATG3; ATG3; FUNCTIONS IN- molecular_function unknown; INVOLVED IN- autophagy; LOCATED IN- cellu [...] (313 aa)					•		•		0.720
	AT3G61710	autophagy protein Apg6 family; autophagy protein Apg6 family; FUNCTIONS IN- molecular_function [...] (517 aa)							•		0.679
	ATAPG4B	autophagy 4b (APG4b); autophagy 4b (APG4b); FUNCTIONS IN- peptidase activity; INVOLVED IN- auto [...] (477 aa)							•		0.659
	APG5	APG5 (AUTOPHAGY 5); transporter; Autophagy protein ATG5. Forms a conjugate with ATG12 with an e [...] (337 aa)					•		•		0.588
	ATATG8E	AtATG8e; microtubule binding; Involved in autophagy. Under nutrient starvation the protein loca [...] (122 aa)							•		0.577

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	95
cd01612	87	cd01612, APG12_C, Ubiquitin-like domain of APG12	1e-39
pfam04110	87	pfam04110, APG12, Ubiquitin-like autophagy protein	5e-39

>gnl|CDD|176356 cd01612, APG12_C, Ubiquitin-like domain of APG12

 Score =  126 bits (318), Expect = 1e-39
 Identities = 41/87 (47%), Positives = 61/87 (70%), Gaps = 3/87 (3%)

Query: 12 KVVVHFRATGGAPILKQAKFKISGSDKFAKVIEFLCRHLGR---ETLFVYVNSAFSPNPD 68
          KV + F+  G APILKQ  FKIS +  F  VI+FL + L     ++LF+Y+N++F+P+PD
Sbjct: 1  KVTIRFKPIGSAPILKQKVFKISATQSFQAVIDFLRKRLKLKASDSLFLYINNSFAPSPD 60

Query: 69 ELVIDLYNNFGFDGKLIVNYACSMAWG 95
          E V +LY  FG +G+LIV+Y  ++A+G
Sbjct: 61 ENVGNLYRCFGTNGELIVSYCKTVAFG 87

APG12_C The carboxy-terminal ubiquitin-like domain of APG12. Autophagy is a process in which cytoplasmic components are delivered to the lysosome/vacuole for degradation. Autophagy requires a ubiquitin-like protein conjugation system, in which APG12 is covalently bound to APG5. Length = 87

>gnl|CDD|217901 pfam04110, APG12, Ubiquitin-like autophagy protein Apg12

 Score =  124 bits (313), Expect = 5e-39
 Identities = 44/87 (50%), Positives = 64/87 (73%), Gaps = 3/87 (3%)

Query: 12 KVVVHFRATGGAPILKQAKFKISGSDKFAKVIEFLCRHLG---RETLFVYVNSAFSPNPD 68
          K+ +  RA G APILK++KFK++ S  FA VI FL + L     ++LF+YVN++F+P+PD
Sbjct: 1  KITIRLRAIGDAPILKKSKFKVNPSQTFASVILFLKKFLKLQASDSLFLYVNNSFAPSPD 60

Query: 69 ELVIDLYNNFGFDGKLIVNYACSMAWG 95
          ++V +LY  FG DGKL++NY  S+AWG
Sbjct: 61 QIVGNLYECFGTDGKLVLNYCISVAWG 87

In yeast, 15 Apg proteins coordinate the formation of autophagosomes. Autophagy is a bulk degradation process induced by starvation in eukaryotic cells. The Apg12 system is one of the ubiquitin-like protein conjugation systems conserved in eukaryotes. It was first discovered in yeast during systematic analyses of the apg mutants defective in autophagy. Covalent attachment of Apg12-Apg5 is essential for autophagy. Length = 87

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	95
cd01612	87	APG12_C Ubiquitin-like domain of APG12. APG12_C Th	100.0
PF04110	87	APG12: Ubiquitin-like autophagy protein Apg12 ; In	100.0
KOG3439	116	consensus Protein conjugation factor involved in a	100.0
cd01611	112	GABARAP Ubiquitin domain of GABA-receptor-associat	100.0
KOG1654	116	consensus Microtubule-associated anchor protein in	99.97
PF02991	104	Atg8: Autophagy protein Atg8 ubiquitin like; Inter	99.97
PTZ00380	121	microtubule-associated protein (MAP); Provisional	99.94
PF04106	197	APG5: Autophagy protein Apg5 ; InterPro: IPR007239	95.86
PF11976	72	Rad60-SLD: Ubiquitin-2 like Rad60 SUMO-like; Inter	92.8
PF11816	331	DUF3337: Domain of unknown function (DUF3337); Int	90.64
KOG1209	289	consensus 1-Acyl dihydroxyacetone phosphate reduct	90.01
cd00196	69	UBQ Ubiquitin-like proteins. Ubiquitin homologs; I	87.5
cd01763	87	Sumo Small ubiquitin-related modifier (SUMO). Smal	86.91
PF03671	76	Ufm1: Ubiquitin fold modifier 1 protein; InterPro:	86.27
PF13019	162	Telomere_Sde2: Telomere stability and silencing	86.15
cd06406	80	PB1_P67 A PB1 domain is present in p67 proteins wh	85.73
PF08154	65	NLE: NLE (NUC135) domain; InterPro: IPR012972 This	84.34
smart00213	64	UBQ Ubiquitin homologues. Ubiquitin-mediated prote	84.05
PF10302	97	DUF2407: DUF2407 ubiquitin-like domain; InterPro:	82.83
PF09138	96	Urm1: Urm1 (Ubiquitin related modifier); InterPro:	82.5

>cd01612 APG12_C Ubiquitin-like domain of APG12

Probab=100.00  E-value=6.7e-41  Score=219.81  Aligned_cols=84  Identities=49%  Similarity=0.913  Sum_probs=82.2

Q ss_pred             cEEEEeeeCCCCCceeeeeEEecCCchHHHHHHHHHhhc---CCceEEEEEcCccCCCcccHHHHHHHHhCCCCEEEEEe
Q 034423           12 KVVVHFRATGGAPILKQAKFKISGSDKFAKVIEFLCRHL---GRETLFVYVNSAFSPNPDELVIDLYNNFGFDGKLIVNY   88 (95)
Q Consensus        12 KV~v~~~~~g~~P~L~k~KflV~~~~t~~~~~~~LRk~L---~~~slFlyVnn~f~P~~d~~v~~LY~~~k~dG~Lyi~Y   88 (95)
                      ||+|||+|+|++|+|+|+||+||+++||++|+.+|||||   +++|||+||||+|+|++|++||+||++|++||||||+|
T Consensus         1 kv~i~~~~~g~~p~l~k~kflv~~~~tv~~~~~~lrk~L~l~~~~slflyvnn~f~p~~d~~~g~LY~~~~~dGfLyi~Y   80 (87)
T cd01612           1 KVTIRFKPIGSAPILKQKVFKISATQSFQAVIDFLRKRLKLKASDSLFLYINNSFAPSPDENVGNLYRCFGTNGELIVSY   80 (87)
T ss_pred             CeEEEEEECCCCccccccEEEeCCCCCHHHHHHHHHHHhCCCccCeEEEEECCccCCCchhHHHHHHHhcCCCCEEEEEE
Confidence            799999999999999999999999999999999999999   67999999999999999999999999996699999999


Q ss_pred             cCCcccC
Q 034423           89 ACSMAWG   95 (95)
Q Consensus        89 s~~~afG   95 (95)
                      |+++|||
T Consensus        81 s~~~afG   87 (87)
T cd01612          81 CKTVAFG   87 (87)
T ss_pred             eCccccC
Confidence            9999999

APG12_C The carboxy-terminal ubiquitin-like domain of APG12. Autophagy is a process in which cytoplasmic components are delivered to the lysosome/vacuole for degradation. Autophagy requires a ubiquitin-like protein conjugation system, in which APG12 is covalently bound to APG5.

>PF04110 APG12: Ubiquitin-like autophagy protein Apg12 ; InterPro: IPR007242 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells

Probab=100.00  E-value=3.3e-39  Score=212.36  Aligned_cols=84  Identities=57%  Similarity=0.983  Sum_probs=67.6

Q ss_pred             cEEEEeeeCCCCCceeeeeEEecCCchHHHHHHHHHhhc---CCceEEEEEcCccCCCcccHHHHHHHHhCCCCEEEEEe
Q 034423           12 KVVVHFRATGGAPILKQAKFKISGSDKFAKVIEFLCRHL---GRETLFVYVNSAFSPNPDELVIDLYNNFGFDGKLIVNY   88 (95)
Q Consensus        12 KV~v~~~~~g~~P~L~k~KflV~~~~t~~~~~~~LRk~L---~~~slFlyVnn~f~P~~d~~v~~LY~~~k~dG~Lyi~Y   88 (95)
                      ||+|||+++|+||+|+++||+|+++++|+.++.||||+|   ++|+||+||||+|+|+||+++|+||+||+.||.|+|+|
T Consensus         1 KV~v~fk~iG~aPilk~~k~kI~~~~~f~~vi~fLrk~Lk~~~~~slFlYin~sFaPspDe~vg~L~~~f~~~~~Liv~Y   80 (87)
T PF04110_consen    1 KVTVRFKAIGSAPILKQKKFKISASQTFATVIAFLRKKLKLKPSDSLFLYINNSFAPSPDETVGDLYRCFGTNGELIVSY   80 (87)
T ss_dssp             EEEEEEEEETT----S--EEEEETTSBTHHHHHHHHHHCT----SS-EEEEEEEE---TTSBHHHHHHHH-BTTBEEEEE
T ss_pred             CEEEEEEecCCCccccCcEEEECCCCchHHHHHHHHHHhCCccCCeEEEEEcCccCCCchhHHHHHHHHhCCCCEEEEEE
Confidence            899999999999999999999999999999999999999   58999999999999999999999999999999999999


Q ss_pred             cCCcccC
Q 034423           89 ACSMAWG   95 (95)
Q Consensus        89 s~~~afG   95 (95)
                      |.++|||
T Consensus        81 s~t~A~G   87 (87)
T PF04110_consen   81 SKTPAWG   87 (87)
T ss_dssp             ESSS---
T ss_pred             ecccccC
Confidence            9999999

In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents Apg12, which is covalently bound to Apg5 [].; GO: 0000045 autophagic vacuole assembly, 0005737 cytoplasm; PDB: 1WZ3_B.

>KOG3439 consensus Protein conjugation factor involved in autophagy [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=2.4e-37  Score=210.97  Aligned_cols=92  Identities=52%  Similarity=0.934  Sum_probs=87.4

Q ss_pred             CCCCCCCCcEEEEeeeCCCCCceeeeeEEecCCchHHHHHHHHHhhcC---CceEEEEEcCccCCCcccHHHHHHHHhCC
Q 034423            4 TDSPSSTRKVVVHFRATGGAPILKQAKFKISGSDKFAKVIEFLCRHLG---RETLFVYVNSAFSPNPDELVIDLYNNFGF   80 (95)
Q Consensus         4 ~~~~~~~~KV~v~~~~~g~~P~L~k~KflV~~~~t~~~~~~~LRk~L~---~~slFlyVnn~f~P~~d~~v~~LY~~~k~   80 (95)
                      .++|+...||.|||+++|++|+|+++||+|+.++||+.++.||||+|+   +++|||||||+|+|+||+.+|+||+||+.
T Consensus        22 ~~~~~~~~kV~i~l~aiG~~PilK~~k~~i~~t~tfa~vi~Flkk~Lkl~as~slflYVN~sFAPsPDq~v~~Ly~cf~~  101 (116)
T KOG3439|consen   22 SASEKNIRKVQIRLRAIGDAPILKKSKFKINPTQTFAKVILFLKKFLKLQASDSLFLYVNNSFAPSPDQIVGNLYECFGT  101 (116)
T ss_pred             ccCCCCcceEEEEEeccCCCcceecceEEeCcchhhHHHHHHHHHHhCCcccCeEEEEEcCccCCCchhHHHHHHHhcCC
Confidence            344555589999999999999999999999999999999999999994   99999999999999999999999999999


Q ss_pred             CCEEEEEecCCcccC
Q 034423           81 DGKLIVNYACSMAWG   95 (95)
Q Consensus        81 dG~Lyi~Ys~~~afG   95 (95)
                      ||.|+++||.++|||
T Consensus       102 d~~Lvl~Yc~s~A~G  116 (116)
T KOG3439|consen  102 DGKLVLNYCISVAWG  116 (116)
T ss_pred             CCEEEEEEeeecccC
Confidence            999999999999999

>cd01611 GABARAP Ubiquitin domain of GABA-receptor-associated protein

Probab=100.00  E-value=7.4e-33  Score=188.94  Aligned_cols=82  Identities=21%  Similarity=0.404  Sum_probs=77.1

Q ss_pred             EEEEeeeCCCCCceeeeeEEecCCchHHHHHHHHHhhc---CCceEEEEEcCccCCCcccHHHHHHHHhCC-CCEEEEEe
Q 034423           13 VVVHFRATGGAPILKQAKFKISGSDKFAKVIEFLCRHL---GRETLFVYVNSAFSPNPDELVIDLYNNFGF-DGKLIVNY   88 (95)
Q Consensus        13 V~v~~~~~g~~P~L~k~KflV~~~~t~~~~~~~LRk~L---~~~slFlyVnn~f~P~~d~~v~~LY~~~k~-dG~Lyi~Y   88 (95)
                      |+|.-.+.|++|+|+++||+||+++||++|+.+||+||   +++|||||||| .+|++|++||+||++|+| ||||||+|
T Consensus        27 VIvE~~~~~~~p~l~k~KflVp~~~tv~~f~~~irk~l~l~~~~slfl~Vn~-~~p~~~~~~~~lY~~~kd~DGfLyl~Y  105 (112)
T cd01611          27 VIVERYPKSDLPDLDKKKYLVPSDLTVGQFVYIIRKRIQLRPEKALFLFVNN-SLPPTSATMSQLYEEHKDEDGFLYMTY  105 (112)
T ss_pred             EEEEEcCCCCcccccCceEEecCCCCHHHHHHHHHHHhCCCccceEEEEECC-ccCCchhHHHHHHHHhCCCCCEEEEEE
Confidence            44444678999999999999999999999999999999   79999999999 599999999999999999 99999999


Q ss_pred             cCCcccC
Q 034423           89 ACSMAWG   95 (95)
Q Consensus        89 s~~~afG   95 (95)
                      |+++|||
T Consensus       106 s~~~tfG  112 (112)
T cd01611         106 SSEETFG  112 (112)
T ss_pred             eccccCC
Confidence            9999999

GABARAP (GABA-receptor-associated protein) belongs ot a large family of proteins that mediate intracellular membrane trafficking and/or fusion. GABARAP binds not only to GABA, type A but also to tubulin, gephrin, and ULK1. Orthologues of GABARAP include Gate-16 (golgi-associated ATPase enhancer), LC3 (microtubule-associated protein light chain 3), and ATG8 (autophagy protein 8). ATG8 is a ubiquitin-like protein that is conjugated to the membrane phospholipid, phosphatidylethanolamine as part of a ubiquitin-like conjugation system essential for autophagosome-formation.

>KOG1654 consensus Microtubule-associated anchor protein involved in autophagy and membrane trafficking [Cytoskeleton]

Probab=99.97  E-value=2.5e-31  Score=181.40  Aligned_cols=82  Identities=22%  Similarity=0.417  Sum_probs=78.2

Q ss_pred             EEEEeeeCCCCCceeeeeEEecCCchHHHHHHHHHhhc---CCceEEEEEcCccCCCcccHHHHHHHHhCC-CCEEEEEe
Q 034423           13 VVVHFRATGGAPILKQAKFKISGSDKFAKVIEFLCRHL---GRETLFVYVNSAFSPNPDELVIDLYNNFGF-DGKLIVNY   88 (95)
Q Consensus        13 V~v~~~~~g~~P~L~k~KflV~~~~t~~~~~~~LRk~L---~~~slFlyVnn~f~P~~d~~v~~LY~~~k~-dG~Lyi~Y   88 (95)
                      |.|..++.+++|.|+|+|||||+++|++||+.+|||||   +++++|+||||. +|..+.+|++||+.+|| ||||||.|
T Consensus        31 VIvEk~~~~~lp~lDK~KyLVP~dltvgqfi~iIRkRiqL~~~kA~flfVn~~-~p~ts~~ms~~Ye~~kdeDgFLYm~Y  109 (116)
T KOG1654|consen   31 VIVEKAGKSQLPDLDKKKYLVPDDLTVGQFIKIIRKRIQLSPEKAFFLFVNNT-SPPTSATMSALYEEEKDEDGFLYMTY  109 (116)
T ss_pred             EEEEecccccCcccccceeeccccccHHHHHHHHHHHhccChhHeEEEEEcCc-CCcchhhHHHHHHhhcccCcEEEEEe
Confidence            66778899999999999999999999999999999999   899999999997 66669999999999999 99999999


Q ss_pred             cCCcccC
Q 034423           89 ACSMAWG   95 (95)
Q Consensus        89 s~~~afG   95 (95)
                      |++++||
T Consensus       110 s~e~tfG  116 (116)
T KOG1654|consen  110 SGENTFG  116 (116)
T ss_pred             ccccccC
Confidence            9999999

>PF02991 Atg8: Autophagy protein Atg8 ubiquitin like; InterPro: IPR004241 Autophagy is generally known as a process involved in the degradation of bulk cytoplasmic components that are non-specifically sequestered into an autophagosome, where they are sequestered into double-membrane vesicles and delivered to the degradative organelle, the lysosome/vacuole, for breakdown and eventual recycling of the resulting macromolecules

Probab=99.97  E-value=2e-30  Score=175.16  Aligned_cols=82  Identities=23%  Similarity=0.435  Sum_probs=70.7

Q ss_pred             EEEEeeeCCCCCceeeeeEEecCCchHHHHHHHHHhhc---CCceEEEEEcCccCCCcccHHHHHHHHhCC-CCEEEEEe
Q 034423           13 VVVHFRATGGAPILKQAKFKISGSDKFAKVIEFLCRHL---GRETLFVYVNSAFSPNPDELVIDLYNNFGF-DGKLIVNY   88 (95)
Q Consensus        13 V~v~~~~~g~~P~L~k~KflV~~~~t~~~~~~~LRk~L---~~~slFlyVnn~f~P~~d~~v~~LY~~~k~-dG~Lyi~Y   88 (95)
                      |+|.-.+.+++|.|+|+||+||.++|++||+..||+||   ++++||+|||| .+|+.+.+||+||+.||| ||||||+|
T Consensus        19 VIvEr~~~s~lp~ldk~KfLvp~~~tv~qf~~~ir~rl~l~~~~alfl~Vn~-~lp~~s~tm~elY~~~kdeDGFLY~~Y   97 (104)
T PF02991_consen   19 VIVERYPKSKLPDLDKKKFLVPKDLTVGQFVYIIRKRLQLSPEQALFLFVNN-TLPSTSSTMGELYEKYKDEDGFLYMTY   97 (104)
T ss_dssp             EEEEE-TTSSS---SSSEEEEETTSBHHHHHHHHHHHTT--TTS-EEEEBTT-BESSTTSBHHHHHHHHB-TTSSEEEEE
T ss_pred             EEEEEccCCChhhcCccEEEEcCCCchhhHHHHhhhhhcCCCCceEEEEEcC-cccchhhHHHHHHHHhCCCCCeEEEEe
Confidence            34444556779999999999999999999999999999   88999999999 599999999999999999 99999999


Q ss_pred             cCCcccC
Q 034423           89 ACSMAWG   95 (95)
Q Consensus        89 s~~~afG   95 (95)
                      |++++||
T Consensus        98 s~e~tFG  104 (104)
T PF02991_consen   98 SSEETFG  104 (104)
T ss_dssp             ESSSSBC
T ss_pred             ccccccC
Confidence            9999999

The yeast proteins are involved in the autophagosome, and Atg8 binds Atg19, via its N terminus and the C terminus of Atg19. Light chain 3 is proposed to function primarily as a subunit of microtubule associated proteins 1A and 1B and that its expression may regulate microtubule binding activity [] Related proteins that belong to this group include the human ganglioside expression factor and a symbiosis-related fungal protein.; PDB: 3ECI_A 3D32_B 1GNU_A 1KM7_A 1KLV_A 1KOT_A 3DOW_A 1KJT_A 1V49_A 2ZJD_C ....

>PTZ00380 microtubule-associated protein (MAP); Provisional

Probab=99.94  E-value=5.7e-27  Score=162.17  Aligned_cols=67  Identities=18%  Similarity=0.263  Sum_probs=64.0

Q ss_pred             eeeeE-EecCCchHHHHHHHHHhhc---CCceEEEEEcCccCCCcccHHHHHHHHhCC-CCEEEEEecCCcccC
Q 034423           27 KQAKF-KISGSDKFAKVIEFLCRHL---GRETLFVYVNSAFSPNPDELVIDLYNNFGF-DGKLIVNYACSMAWG   95 (95)
Q Consensus        27 ~k~Kf-lV~~~~t~~~~~~~LRk~L---~~~slFlyVnn~f~P~~d~~v~~LY~~~k~-dG~Lyi~Ys~~~afG   95 (95)
                      +|+|| +||+++|++||+.+||+||   +++ +||||||+ +|+++++||+||+.||| ||||||+||++++||
T Consensus        40 dK~KfllVP~d~tV~qF~~iIRkrl~l~~~k-~flfVnn~-lp~~s~~mg~lYe~~KDeDGFLYi~Ys~e~tFG  111 (121)
T PTZ00380         40 SKVHFLALPRDATVAELEAAVRQALGTSAKK-VTLAIEGS-TPAVTATVGDIADACKRDDGFLYVSVRTEQAMG  111 (121)
T ss_pred             CceEEEEcCCCCcHHHHHHHHHHHcCCChhH-EEEEECCc-cCCccchHHHHHHHhcCCCCeEEEEEccccccc
Confidence            79999 6999999999999999999   566 99999995 99999999999999999 999999999999999

>PF04106 APG5: Autophagy protein Apg5 ; InterPro: IPR007239 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells

Probab=95.86  E-value=0.0099  Score=43.74  Aligned_cols=80  Identities=20%  Similarity=0.247  Sum_probs=40.3

Q ss_pred             CCCCcEEEEeeeCCCCCceeeeeEEecCCchHHHHHHHHHhhcC--------CceEEEEEcCccCCCcccHHHHHHHHhC
Q 034423            8 SSTRKVVVHFRATGGAPILKQAKFKISGSDKFAKVIEFLCRHLG--------RETLFVYVNSAFSPNPDELVIDLYNNFG   79 (95)
Q Consensus         8 ~~~~KV~v~~~~~g~~P~L~k~KflV~~~~t~~~~~~~LRk~L~--------~~slFlyVnn~f~P~~d~~v~~LY~~~k   79 (95)
                      ...+.|=||+.-.++.|.+...--....+-+-..+-..|+..|+        ..-..++|++ ..++.|+.+..||+++.
T Consensus       106 ~~~r~IPiRiy~~~~~~~iQ~~i~~~~~~g~~~TL~d~L~~~lp~~f~s~~~~~~~~~iihG-I~ipldtpl~~l~~~l~  184 (197)
T PF04106_consen  106 SKFRHIPIRIYLPGSVPVIQPPIPPIKEDGQPQTLGDALSELLPELFPSSDEPELARVIIHG-IEIPLDTPLQWLYENLS  184 (197)
T ss_dssp             SS-SB--EEEEE-SS--EE----B----TT---BTGGGHHHHHTTT--T------EEEEETT-EEE-TTSBHHHHHHHH-
T ss_pred             CCcceeEEEEEeCCCcceEecccccccCCCCcCcHHHHHHHhChhhcccccCccccEEEEeC-eeCCCCCcHHHHHHHcc
Confidence            34467777877777666665544333333333333344444442        2457789999 48888999999999999


Q ss_pred             C-CCEEEEEe
Q 034423           80 F-DGKLIVNY   88 (95)
Q Consensus        80 ~-dG~Lyi~Y   88 (95)
                      - ||||||.=
T Consensus       185 ~~D~FLhivv  194 (197)
T PF04106_consen  185 YPDGFLHIVV  194 (197)
T ss_dssp             -TTS-EEEEE
T ss_pred             CCCCeEEEEE
Confidence            8 99999963

In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents autophagy protein 5 (Apg5).; GO: 0006914 autophagy, 0005737 cytoplasm; PDB: 2DYM_G 2DYO_A.

>PF11976 Rad60-SLD: Ubiquitin-2 like Rad60 SUMO-like; InterPro: IPR022617 This entry includes small ubiquitin-related modifier (SUMO) proteins

Probab=92.80  E-value=0.5  Score=28.41  Aligned_cols=47  Identities=26%  Similarity=0.443  Sum_probs=37.2

Q ss_pred             eeeeEEecCCchHHHHHHHHHhhc--CC-ceEEEEEcCccCCCcccHHHHH
Q 034423           27 KQAKFKISGSDKFAKVIEFLCRHL--GR-ETLFVYVNSAFSPNPDELVIDL   74 (95)
Q Consensus        27 ~k~KflV~~~~t~~~~~~~LRk~L--~~-~slFlyVnn~f~P~~d~~v~~L   74 (95)
                      +.-.|.|..+.+++.++...+++.  +. +++-++.++. ...++.+++++
T Consensus        11 ~~~~~~v~~~~~~~~l~~~~~~~~~i~~~~~~~l~fdG~-~L~~~~T~~~~   60 (72)
T PF11976_consen   11 KEIKFKVKPTTTVSKLIEKYCEKKGIPPEESIRLIFDGK-RLDPNDTPEDL   60 (72)
T ss_dssp             EEEEEEEETTSCCHHHHHHHHHHHTTTT-TTEEEEETTE-EE-TTSCHHHH
T ss_pred             CEEEEEECCCCcHHHHHHHHHHhhCCCccceEEEEECCE-EcCCCCCHHHC
Confidence            367899999999999999999998  55 7788888875 45666677664

SUMOs are small proteins that are covalently attached to lysines as post-translational modifications and are used to control multiple cellular process including signal transduction, nuclear transport and DNA replication and repair []. Unlike ubiquitin, they are not involved in protein degradation. This entry also contains the C-terminal Rad60 DNA repair protein SUMO-like domain.; PDB: 3RD2_A 2JXX_A 3RCZ_A 3GOE_A 3A4S_D 3A4R_B 2IO1_D 1U4A_A 2K1F_A 1WZ0_A ....

>PF11816 DUF3337: Domain of unknown function (DUF3337); InterPro: IPR021772 This family of proteins are functionally uncharacterised

Probab=90.64  E-value=2.7  Score=33.00  Aligned_cols=79  Identities=18%  Similarity=0.279  Sum_probs=64.9

Q ss_pred             CcEEEEeeeCC--CCCceeee-----------------eEEecCCchHHHHHHHHHhhc-----------------CCce
Q 034423           11 RKVVVHFRATG--GAPILKQA-----------------KFKISGSDKFAKVIEFLCRHL-----------------GRET   54 (95)
Q Consensus        11 ~KV~v~~~~~g--~~P~L~k~-----------------KflV~~~~t~~~~~~~LRk~L-----------------~~~s   54 (95)
                      .||...+.|-.  ..|.+++-                 |.-.+.-+.+..++.++-.||                 +++.
T Consensus       213 ~Ki~F~L~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rL~A~~mLrvkKI~~yV~ek~~~~~~~~~~~~~~~~~~p~e~  292 (331)
T PF11816_consen  213 PKISFVLQPWDGSLPPNLKPDGKSQKKIKLPPLSEGNSRLNAPRMLRVKKILEYVAEKLEKTPESKTPEMKPKKLKPEEW  292 (331)
T ss_pred             CeeEEEEeecCCCCccccCCCccccccccccccccccceecccchhhhHHHHHHHHHHhccCccccCccccccCCCCCce
Confidence            69999999943  34566665                 888899999999999998888                 2567


Q ss_pred             EEEEEcCccCCCcccHHHHHHHH-hCCCCEEEEEecC
Q 034423           55 LFVYVNSAFSPNPDELVIDLYNN-FGFDGKLIVNYAC   90 (95)
Q Consensus        55 lFlyVnn~f~P~~d~~v~~LY~~-~k~dG~Lyi~Ys~   90 (95)
                      |=|+||+. ...++.+++++=.. +|..|-|.+.|..
T Consensus       293 lEl~C~gq-vL~~~mtLaTVr~~~WK~~~di~L~YR~  328 (331)
T PF11816_consen  293 LELLCNGQ-VLPPDMTLATVRTFIWKSSGDIVLHYRR  328 (331)
T ss_pred             EEEEeCCe-EcCCcCCHHHHHHhhccCCCeEEEEEEe
Confidence            88999997 66778899999887 6779999999964

This family is only found in eukaryotes. This presumed domain is typically between 285 to 342 amino acids in length.

>KOG1209 consensus 1-Acyl dihydroxyacetone phosphate reductase and related dehydrogenases [Secondary metabolites biosynthesis, transport and catabolism]

Probab=90.01  E-value=0.71  Score=36.00  Aligned_cols=55  Identities=18%  Similarity=0.189  Sum_probs=49.3

Q ss_pred             eeeeeEEecCCchHHHHHHHHHhhcCCceEEEEEcC----ccCCCcccHHHHHHHHhCCC
Q 034423           26 LKQAKFKISGSDKFAKVIEFLCRHLGRETLFVYVNS----AFSPNPDELVIDLYNNFGFD   81 (95)
Q Consensus        26 L~k~KflV~~~~t~~~~~~~LRk~L~~~slFlyVnn----~f~P~~d~~v~~LY~~~k~d   81 (95)
                      |+..|.-|++++.+.+|..++|+. +..+|-+.+||    +..|..|.+++++=+||+.+
T Consensus        54 l~~~kLDV~~~~~V~~v~~evr~~-~~Gkld~L~NNAG~~C~~Pa~d~~i~ave~~f~vN  112 (289)
T KOG1209|consen   54 LKPYKLDVSKPEEVVTVSGEVRAN-PDGKLDLLYNNAGQSCTFPALDATIAAVEQCFKVN  112 (289)
T ss_pred             CeeEEeccCChHHHHHHHHHHhhC-CCCceEEEEcCCCCCcccccccCCHHHHHhhhccc
Confidence            678899999999999999999998 77889999998    45689999999999999974

>cd00196 UBQ Ubiquitin-like proteins

Probab=87.50  E-value=2.8  Score=21.93  Aligned_cols=44  Identities=20%  Similarity=0.197  Sum_probs=34.1

Q ss_pred             ceeeeeEEecCCchHHHHHHHHHhhc--CCceEEEEEcCccCCCcc
Q 034423           25 ILKQAKFKISGSDKFAKVIEFLCRHL--GRETLFVYVNSAFSPNPD   68 (95)
Q Consensus        25 ~L~k~KflV~~~~t~~~~~~~LRk~L--~~~slFlyVnn~f~P~~d   68 (95)
                      .-...++.++.+.|+++++..|.++.  +.+...|++|....+...
T Consensus         6 ~~~~~~~~~~~~~tv~~l~~~i~~~~~~~~~~~~l~~~~~~~~~~~   51 (69)
T cd00196           6 DGKTVELLVPSGTTVADLKEKLAKKLGLPPEQQRLLVNGKILPDSL   51 (69)
T ss_pred             CCCEEEEEcCCCCcHHHHHHHHHHHHCcChHHeEEEECCeECCCCC
Confidence            34556788889999999999999887  666788888886555444

Ubiquitin homologs; Includes ubiquitin and ubiquitin-like proteins. Ubiquitin-mediated proteolysis is part of the regulated turnover of proteins required for controlling cell cycle progression. Other family members are protein modifiers that perform a wide range of functions. Ubiquitination usually results in a covalent bond between the C-terminus of ubiquitin and the epsilon-amino group of a substrate lysine. The three-step mechanism requires an activating enzyme (E1) that forms a thiol ester with the C-terminal carboxy group, a conjugating enzyme (E2) that transiently carries the activated ubiquitin molecule as a thiol ester, and a ligase (E3) that transfers the activated ubiquitin from the E2 to the substrate lysine residue. In poly-ubiquitination, ubiquitin itself is the substrate.

>cd01763 Sumo Small ubiquitin-related modifier (SUMO)

Probab=86.91  E-value=5.9  Score=25.07  Aligned_cols=64  Identities=14%  Similarity=0.206  Sum_probs=45.1

Q ss_pred             CCCCCCcEEEEeeeCCCCCceeeeeEEecCCchHHHHHHHHHhhc--CCceEEEEEcCccCCCcccHHHHH
Q 034423            6 SPSSTRKVVVHFRATGGAPILKQAKFKISGSDKFAKVIEFLCRHL--GRETLFVYVNSAFSPNPDELVIDL   74 (95)
Q Consensus         6 ~~~~~~KV~v~~~~~g~~P~L~k~KflV~~~~t~~~~~~~LRk~L--~~~slFlyVnn~f~P~~d~~v~~L   74 (95)
                      ..+...+|+|.++..    .-+...|.|..+.++..++..++.+-  +.+++-|+-++. .-..+.+.+++
T Consensus         5 ~~~~~~~i~I~v~~~----~g~~~~~~v~~~~~l~~l~~~y~~~~gi~~~~~rf~f~G~-~L~~~~T~~~l   70 (87)
T cd01763           5 KGEISEHINLKVKGQ----DGNEVFFKIKRSTPLKKLMEAYCQRQGLSMNSVRFLFDGQ-RIRDNQTPDDL   70 (87)
T ss_pred             CCCCCCeEEEEEECC----CCCEEEEEEcCCCHHHHHHHHHHHHhCCCccceEEEECCe-ECCCCCCHHHc
Confidence            344447899998664    33456799999999999999998888  444444444554 45566677765

Small ubiquitin-related modifier (SUMO) proteins are conjugated to numerous intracellular targets and serve to modulate protein interaction, localization, activity or stability. SUMO (also known as "Smt3" and "sentrin" in other organisms) is linked to several different pathways, including nucleocytoplasmic transport. Attachment of SUMO to targets proteins is stimulated by PIAS (Protein inhibitor of activated STATs) proteins which serve as E3-like ligases.

>PF03671 Ufm1: Ubiquitin fold modifier 1 protein; InterPro: IPR005375 Ubiquitinylation is an ATP-dependent process that involves the action of at least three enzymes: a ubiquitin-activating enzyme (E1, IPR000011 from INTERPRO), a ubiquitin-conjugating enzyme (E2, IPR000608 from INTERPRO), and a ubiquitin ligase (E3, IPR000569 from INTERPRO, IPR003613 from INTERPRO), which work sequentially in a cascade

Probab=86.27  E-value=6.9  Score=25.25  Aligned_cols=71  Identities=15%  Similarity=0.284  Sum_probs=51.1

Q ss_pred             cEEEEeeeCCCCCceeeeeEEecCCchHHHHHHHHHhhc---CCceEEEEEcCccCCCcccHHHHHHHHhCCCCEE
Q 034423           12 KVVVHFRATGGAPILKQAKFKISGSDKFAKVIEFLCRHL---GRETLFVYVNSAFSPNPDELVIDLYNNFGFDGKL   84 (95)
Q Consensus        12 KV~v~~~~~g~~P~L~k~KflV~~~~t~~~~~~~LRk~L---~~~slFlyVnn~f~P~~d~~v~~LY~~~k~dG~L   84 (95)
                      ||+++.-- ++=|-+-=+.+.||++..|..+++|-....   +.+|.-+--++ .--.|.++.|+++-+|+.+=.|
T Consensus         2 kvtfKI~l-tsDp~~p~kv~sVPE~apftaVlkfaAeeF~vp~~tsaiItndG-~GInP~QTag~vflKhGseLrl   75 (76)
T PF03671_consen    2 KVTFKITL-TSDPKLPYKVISVPEEAPFTAVLKFAAEEFKVPPATSAIITNDG-VGINPQQTAGNVFLKHGSELRL   75 (76)
T ss_dssp             EEEEEEEE-STSSTS-EEEEEEETTSBHHHHHHHHHHHTTS-SSSEEEEESSS--EE-TTSBHHHHHHHT-SEEEE
T ss_pred             cEEEEEEE-ccCCCCcceEEecCCCCchHHHHHHHHHHcCCCCceEEEEecCC-cccccchhhhhhHhhcCcEeee
Confidence            66666554 446788889999999999999999998888   55664333333 3568889999999999875443

There are many different E3 ligases, which are responsible for the type of ubiquitin chain formed, the specificity of the target protein, and the regulation of the ubiquitinylation process []. Ubiquitinylation is an important regulatory tool that controls the concentration of key signalling proteins, such as those involved in cell cycle control, as well as removing misfolded, damaged or mutant proteins that could be harmful to the cell. Several ubiquitin-like molecules have been discovered, such as Ufm1 (IPR005375 from INTERPRO), SUMO1 (IPR003653 from INTERPRO), NEDD8, Rad23 (IPR004806 from INTERPRO), Elongin B and Parkin (IPR003977 from INTERPRO), the latter being involved in Parkinson's disease []. Ubiquitin-like molecules (UBLs) can be divided into two subclasses: type-1 UBLs, which ligate to target proteins in a manner similar, but not identical, to the ubiquitylation pathway, such as SUMO, NEDD8, and UCRP/ISG15, and type-2 UBLs (also called UDPs, ubiquitin-domain proteins), which contain ubiquitin-like structure embedded in a variety of different classes of large proteins with apparently distinct functions, such as Rad23, Elongin B, Scythe, Parkin, and HOIL-1. This entry represents Ufm1 (ubiquitin-fold modifier), which is a ubiquitin-like protein with structural similarities to ubiquitin [, ]. Ufm1 is one of a number of ubiquitin-like modifiers that conjugate to target proteins in cells through Uba5 (E1) and Ufc1 (E2). The Ufm1-system is conserved in metazoa and plants, suggesting it has a potential role in multicellular organisms []. Human Ufm1 is synthesized as a precursor consisting of 85 amino-acid residues. Prior to activation by Uba5, the extra amino acids at the C-terminal region of Ufm1 are removed to expose Gly, which is necessary for conjugation to target molecule(s). C-terminal processing of Ufm1 requires two specific cysteine peptidases (IPR012462 from INTERPRO): UfSP1 and UfSP2; both peptidases are also able to release Ufm1 from Ufm1-conjugated cellular proteins. UfSP2 is present in most, if not all, of multi-cellular organisms including plant, nematode, fly, and mammal, whereas UfSP1 is not present in plants and nematodes []. For further information on ubiquitin, please see Protein of the Month [].; PDB: 1J0G_A 1WXS_A 1L7Y_A.

>PF13019 Telomere_Sde2: Telomere stability and silencing

Probab=86.15  E-value=4.5  Score=29.45  Aligned_cols=74  Identities=14%  Similarity=0.208  Sum_probs=50.8

Q ss_pred             EEeeeCCCCCceeeeeEEecCCchHHHHHHHHHhhc--CCc-eEEEEEc--CccCCCcccHHHHHHHHhCCCCEEEEEe
Q 034423           15 VHFRATGGAPILKQAKFKISGSDKFAKVIEFLCRHL--GRE-TLFVYVN--SAFSPNPDELVIDLYNNFGFDGKLIVNY   88 (95)
Q Consensus        15 v~~~~~g~~P~L~k~KflV~~~~t~~~~~~~LRk~L--~~~-slFlyVn--n~f~P~~d~~v~~LY~~~k~dG~Lyi~Y   88 (95)
                      |........+--.-.-+-+|.+.|++.+...|..++  +.+ .++|+++  ....+..+..++++...-.+.+++.+.-
T Consensus         3 Vlvss~~g~~lp~tl~~~lp~~ttv~dL~~~l~~~~~~~~~~~~~L~~~~n~~l~~~~~~~~s~l~~~~~~~~~~~l~l   81 (162)
T PF13019_consen    3 VLVSSFDGLTLPPTLSLSLPSTTTVSDLKDRLSERLPIPSSSQLYLTTNSNGQLSPSSDIPLSSLLSSSQDSDFITLRL   81 (162)
T ss_pred             EEEecCCCCCCCCeEEeeCCCCCcHHHHHHHHHhhcCCCccceeEEEEeCCCeeCCCccccHHhhccCcCCCCceEEEE
Confidence            333333333233555678999999999999999999  323 3677775  3456778888999988777656666543

>cd06406 PB1_P67 A PB1 domain is present in p67 proteins which forms a signaling complex with p40, a crucial step for activation of NADPH oxidase during phagocytosis

Probab=85.73  E-value=4.9  Score=26.08  Aligned_cols=54  Identities=15%  Similarity=0.201  Sum_probs=42.9

Q ss_pred             EEecCCchHHHHHHHHHhhc--CCceEEEEEc----CccCCCcccHHHHHHHHhCCCCEEE
Q 034423           31 FKISGSDKFAKVIEFLCRHL--GRETLFVYVN----SAFSPNPDELVIDLYNNFGFDGKLI   85 (95)
Q Consensus        31 flV~~~~t~~~~~~~LRk~L--~~~slFlyVn----n~f~P~~d~~v~~LY~~~k~dG~Ly   85 (95)
                      ..||.+.+++++..-|++||  +.+.+-|.--    +.+.|-.|+.|.+.|.+=+ ||-|-
T Consensus        15 Irvp~~~~y~~L~~ki~~kLkl~~e~i~LsYkde~s~~~v~l~d~dle~aws~~~-~~~lT   74 (80)
T cd06406          15 IQVARGLSYATLLQKISSKLELPAEHITLSYKSEASGEDVILSDTNMEDVWSQAK-DGCLT   74 (80)
T ss_pred             EEcCCCCCHHHHHHHHHHHhCCCchhcEEEeccCCCCCccCcChHHHHHHHHhhc-CCeEE
Confidence            47899999999999999999  6778887442    3466778999999999877 55443

PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes . A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants. The p67 proteins contain

>PF08154 NLE: NLE (NUC135) domain; InterPro: IPR012972 This domain is located N-terminal to WD40 repeats(IPR001680 from INTERPRO)

Probab=84.34  E-value=6.3  Score=23.93  Aligned_cols=52  Identities=13%  Similarity=0.151  Sum_probs=38.9

Q ss_pred             cEEEEeeeCCCCCceeeeeEEecCCchHHHHHHHHHhhc-C-C--ceEEEEEcCcc
Q 034423           12 KVVVHFRATGGAPILKQAKFKISGSDKFAKVIEFLCRHL-G-R--ETLFVYVNSAF   63 (95)
Q Consensus        12 KV~v~~~~~g~~P~L~k~KflV~~~~t~~~~~~~LRk~L-~-~--~slFlyVnn~f   63 (95)
                      +|.|+|.....-..+...-+.||.+.+..++-..+.+-| . .  -..=+|||+.+
T Consensus         1 qv~v~F~t~~~~~~~~~~~~~VP~~~t~~~Ls~LvN~LL~~~~~~vpfdF~i~~~~   56 (65)
T PF08154_consen    1 QVQVQFVTEDGEYEVPGTPISVPSNITRKELSELVNQLLDDEEEPVPFDFLINGEE   56 (65)
T ss_pred             CEEEEEEcCCCCccCCCCCEEEeCCCCHHHHHHHHHHHhccCCCCCcEEEEECCEE
Confidence            478899774443477778899999999999999998888 2 2  23345788764

It is found in the microtubule-associated protein Q12024 from SWISSPROT [].

>smart00213 UBQ Ubiquitin homologues

Probab=84.05  E-value=5.7  Score=22.44  Aligned_cols=45  Identities=13%  Similarity=0.124  Sum_probs=31.9

Q ss_pred             eeeEEecCCchHHHHHHHHHhhc--CCceEEEEEcCccCCCcccHHHH
Q 034423           28 QAKFKISGSDKFAKVIEFLCRHL--GRETLFVYVNSAFSPNPDELVID   73 (95)
Q Consensus        28 k~KflV~~~~t~~~~~~~LRk~L--~~~slFlyVnn~f~P~~d~~v~~   73 (95)
                      ...+.|+.+.|++++...|.++.  +.+.+=|+.|+. ....+.++++
T Consensus        11 ~~~~~v~~~~tv~~lk~~i~~~~~~~~~~~~L~~~g~-~L~d~~tL~~   57 (64)
T smart00213       11 TITLEVKPSDTVSELKEKIAELTGIPVEQQRLIYKGK-VLEDDRTLAD   57 (64)
T ss_pred             eEEEEECCCCcHHHHHHHHHHHHCCCHHHEEEEECCE-ECCCCCCHHH
Confidence            44688999999999999998887  555555666765 3444555543

Ubiquitin-mediated proteolysis is involved in the regulated turnover of proteins required for controlling cell cycle progression

>PF10302 DUF2407: DUF2407 ubiquitin-like domain; InterPro: IPR019413 This entry represents a family of proteins of unknown function found in fungi

Probab=82.83  E-value=11  Score=24.86  Aligned_cols=76  Identities=9%  Similarity=0.093  Sum_probs=48.1

Q ss_pred             cEEEEeeeCCCCCceeeeeEEecCCchHHHHHHHHHhhc----CCceEEEEEcCccCCCcccHHHHHHHHh---------
Q 034423           12 KVVVHFRATGGAPILKQAKFKISGSDKFAKVIEFLCRHL----GRETLFVYVNSAFSPNPDELVIDLYNNF---------   78 (95)
Q Consensus        12 KV~v~~~~~g~~P~L~k~KflV~~~~t~~~~~~~LRk~L----~~~slFlyVnn~f~P~~d~~v~~LY~~~---------   78 (95)
                      -++|||..  ++|+|.=.- --+.+.|+.++.+.||.++    .+..|=+--++..++... .++..-...         
T Consensus         2 ~l~IRFs~--sipDl~L~I-~~~~~~Tv~~LK~lIR~~~p~~~s~~rLRlI~~Gr~L~d~t-~l~~~l~~~~~~~~~~~g   77 (97)
T PF10302_consen    2 YLTIRFSD--SIPDLPLDI-PSPNTTTVAWLKQLIRERLPPEPSRRRLRLIYAGRLLNDHT-DLSSELKLPTARSSKGKG   77 (97)
T ss_pred             eEEEEECC--CCCCceeec-CCCCcccHHHHHHHHHhhcCCCCccccEEeeecCcccCccc-hhhhhhccccccCccccC
Confidence            48999977  788843211 1448899999999999999    234554444666555444 444443333         


Q ss_pred             CC-C----CEEEEEecCC
Q 034423           79 GF-D----GKLIVNYACS   91 (95)
Q Consensus        79 k~-d----G~Lyi~Ys~~   91 (95)
                      +. +    ...||+.|..
T Consensus        78 k~~~~~~~~~~yIhCsIG   95 (97)
T PF10302_consen   78 KAPERQEAPRIYIHCSIG   95 (97)
T ss_pred             cCccCCCCCeEEEEEecc
Confidence            11 2    4888888754

They contain a characteristic GFDRL sequence motif.

>PF09138 Urm1: Urm1 (Ubiquitin related modifier); InterPro: IPR015221 Ubiquitin related modifier 1 (Urm1) is a ubiquitin related protein that modifies proteins in the yeast ubiquitin-like urmylation pathway []

Probab=82.50  E-value=0.74  Score=30.78  Aligned_cols=37  Identities=30%  Similarity=0.615  Sum_probs=25.6

Q ss_pred             cEEEEeeeCCCCCce----eeeeEEec---CCchHHHHHHHHHhhc
Q 034423           12 KVVVHFRATGGAPIL----KQAKFKIS---GSDKFAKVIEFLCRHL   50 (95)
Q Consensus        12 KV~v~~~~~g~~P~L----~k~KflV~---~~~t~~~~~~~LRk~L   50 (95)
                      ||+|.|  .|.+-.|    ++.+..+|   ...|+++++.+||+.+
T Consensus         1 ~i~vEF--~GGlE~Lf~~~k~h~v~l~~~~~~~ti~~Li~~l~~nl   44 (96)
T PF09138_consen    1 KITVEF--SGGLELLFGNQKKHKVSLPSDGEPATIKDLIDYLRDNL   44 (96)
T ss_dssp             EEEEEE--ETTCGGGTTT-SEEEEEE-SSCSC-BHHHHHHHHCCCT
T ss_pred             CEEEEE--cCcHHHHhCCceeEEEEcCCCCCCcCHHHHHHHHHHhc
Confidence            577888  3444433    33356777   8899999999999988

Structural comparisons and phylogenetic analysis of the ubiquitin superfamily has indicated that Urm1 has the most conserved structural and sequence features of the common ancestor of the entire superfamily []. ; GO: 0034227 tRNA thio-modification, 0005737 cytoplasm; PDB: 2AX5_A 2QJL_A 2PKO_A 1WGK_A 1XO3_A 2K9X_A.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	95
1wz3_A	96	The Crystal Structure Of Plant Atg12 Length = 96		3e-41
4gdk_A	91	Crystal Structure Of Human Atg12~atg5 Conjugate In		1e-14
3w1s_C	91	Crystal Structure Of Saccharomyces Cerevisiae Atg12		9e-11

>pdb|1WZ3|A Chain A, The Crystal Structure Of Plant Atg12 Length = 96

Iteration: 1
 Score =  163 bits (412), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 75/93 (80%), Positives = 85/93 (91%)
Query: 3  ATDSPSSTRKVVVHFRATGGAPILKQAKFKISGSDKFAKVIEFLCRHLGRETLFVYVNSA 62
          AT+SP+S +K+VVH RATGGAPILKQ+KFK+SGSDKFA VI+FL R L  ++LFVYVNSA
Sbjct: 4  ATESPNSVQKIVVHLRATGGAPILKQSKFKVSGSDKFANVIDFLRRQLHSDSLFVYVNSA 63
Query: 63 FSPNPDELVIDLYNNFGFDGKLIVNYACSMAWG 95
          FSPNPDE VIDLYNNFGFDGKL+VNYACSMAWG
Sbjct: 64 FSPNPDESVIDLYNNFGFDGKLVVNYACSMAWG 96

>pdb|4GDK|A Chain A, Crystal Structure Of Human Atg12~atg5 Conjugate In Complex With An N- Terminal Fragment Of Atg16l1 Length = 91

Iteration: 1
 Score = 74.3 bits (181), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 35/90 (38%), Positives = 55/90 (61%), Gaps = 3/90 (3%)
Query: 9  STRKVVVHFRATGGAPILKQAKFKISGSDKFAKVIEFLCRHL---GRETLFVYVNSAFSP 65
          S +K+ +  +A G  PI+K  K+ +  +     +I+F+ + L     E LF+YVN +F+P
Sbjct: 2  SKKKIDILLKAVGDTPIMKTKKWAVERTRTIQGLIDFIKKFLKLVASEQLFIYVNQSFAP 61
Query: 66 NPDELVIDLYNNFGFDGKLIVNYACSMAWG 95
          +PD+ V  LY  FG DGKL+++Y  S AWG
Sbjct: 62 SPDQEVGTLYECFGSDGKLVLHYCKSQAWG 91

>pdb|3W1S|C Chain C, Crystal Structure Of Saccharomyces Cerevisiae Atg12-Atg5 Conjugate Bound To The N-Terminal Domain Of Atg16 Length = 91

Iteration: 1
 Score = 62.0 bits (149), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 31/87 (35%), Positives = 54/87 (62%)
Query: 9  STRKVVVHFRATGGAPILKQAKFKISGSDKFAKVIEFLCRHLGRETLFVYVNSAFSPNPD 68
          + +K+ + F+  G    LK +  KIS S  FA VI FL R L  + ++ Y+N++F+P+P 
Sbjct: 5  NIQKIQIKFQPIGSIGQLKPSVCKISMSQSFAMVILFLKRRLKMDHVYCYINNSFAPSPQ 64
Query: 69 ELVIDLYNNFGFDGKLIVNYACSMAWG 95
          + + +L+  F  + +LIV+Y  S+A+G
Sbjct: 65 QNIGELWMQFKTNDELIVSYCASVAFG 91

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	95
1wz3_A	96	Autophagy 12B, ATG12B, APG12B; ubiquitin-fold, pla	3e-43
2zjd_A	130	Microtubule-associated proteins 1A/1B light chain	6e-07

>1wz3_A Autophagy 12B, ATG12B, APG12B; ubiquitin-fold, plant protein; 1.80A {Arabidopsis thaliana} SCOP: d.15.1.7 Length = 96

 Score =  134 bits (339), Expect = 3e-43
 Identities = 75/93 (80%), Positives = 85/93 (91%)

Query: 3  ATDSPSSTRKVVVHFRATGGAPILKQAKFKISGSDKFAKVIEFLCRHLGRETLFVYVNSA 62
          AT+SP+S +K+VVH RATGGAPILKQ+KFK+SGSDKFA VI+FL R L  ++LFVYVNSA
Sbjct: 4  ATESPNSVQKIVVHLRATGGAPILKQSKFKVSGSDKFANVIDFLRRQLHSDSLFVYVNSA 63

Query: 63 FSPNPDELVIDLYNNFGFDGKLIVNYACSMAWG 95
          FSPNPDE VIDLYNNFGFDGKL+VNYACSMAWG
Sbjct: 64 FSPNPDESVIDLYNNFGFDGKLVVNYACSMAWG 96

>2zjd_A Microtubule-associated proteins 1A/1B light chain 3B precursor; autophagy, LC3, microtubule-associated protein 1 light chain 3, cytoplasm, cytoplasmic vesicle, lipoprotein; 1.56A {Homo sapiens} SCOP: d.15.1.3 PDB: 2z0e_B 2zzp_B 2z0d_B 1ugm_A 1v49_A 2k6q_A 3eci_A Length = 130

 Score = 43.5 bits (102), Expect = 6e-07
 Identities = 18/93 (19%), Positives = 40/93 (43%), Gaps = 4/93 (4%)

Query: 7   PSSTRKVVVHFRATGGAPILKQAKFKISGSDKFAKVIEFLCRHLG---RETLFVYVNSAF 63
           P+    ++  ++     P+L + KF +      +++I+ + R L     +  F+ VN   
Sbjct: 33  PTKIPVIIERYKGEKQLPVLDKTKFLVPDHVNMSELIKIIRRRLQLNANQAFFLLVNGHS 92

Query: 64  SPNPDELVIDLYNNFG-FDGKLIVNYACSMAWG 95
             +    + ++Y +    DG L + YA    +G
Sbjct: 93  MVSVSTPISEVYESEKDEDGFLYMVYASQETFG 125

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	95
3w1s_C	91	Ubiquitin-like protein ATG12; ubiquitin fold, E3-l	100.0
4gdk_A	91	Ubiquitin-like protein ATG12; protein-protein conj	100.0
1wz3_A	96	Autophagy 12B, ATG12B, APG12B; ubiquitin-fold, pla	100.0
3rui_B	118	Autophagy-related protein 8; autophagosome formati	100.0
3h9d_A	119	ATG8, microtubule-associated protein 1A/1B, light	100.0
3m95_A	125	Autophagy related protein ATG8; alpha slash beta,	100.0
1eo6_A	117	GATE-16, golgi-associated ATPase enhancer of 16 KD	99.98
2zjd_A	130	Microtubule-associated proteins 1A/1B light chain	99.97
2r2q_A	110	Gamma-aminobutyric acid receptor-associated protei	99.96
1uh6_A	100	Ubiquitin-like 5; beta-grAsp fold, structural geno	93.94
2dyo_A	297	Autophagy protein 5; ubiquitin-fold, herix-bundle,	92.22
2k8h_A	110	Small ubiquitin protein; SUMO, post-translational	92.13
4gdk_B	275	Autophagy protein 5; protein-protein conjugate, pr	91.81
3vqi_A	274	ATG5; autophagy, E3-like, ubiquitin-fold, PRE-auto	91.41
3v6c_B	91	Ubiquitin; structural genomics, structural genomic	90.42
1ip9_A	85	BEM1 protein; ubiquitin alpha/beta roll, signaling	90.39
1wx7_A	106	Ubiquilin 3; ubiquitin-like domain, structural gen	89.69
2jxx_A	97	Nfatc2-interacting protein; nuclear factor of acti	89.57
2eke_C	106	Ubiquitin-like protein SMT3; UBC9, SUMO binding mo	88.28
1wyw_B	97	Ubiquitin-like protein SMT3C; hydrolase; 2.10A {Ho	86.47
3a4r_A	79	Nfatc2-interacting protein; ubiquitin fold, coiled	85.97
3mtn_B	85	UBA80, ubcep1, ubiquitin variant UBV.21.4; ubiquit	84.58
4hcn_B	98	Polyubiquitin, ubiquitin; ubiquitin/NEDD8 deamidas	84.3
2d07_B	93	Ubiquitin-like protein SMT3B; hydrolase; 2.10A {Ho	83.93
2io0_B	91	Small ubiquitin-related modifier 2 precursor; SUMO	83.46
3dbh_I	88	NEDD8; cell cycle, activating enzyme, apoptosis, m	83.45
2uyz_B	79	Small ubiquitin-related modifier 1; sumoylation, c	82.57
3rpf_C	74	Molybdopterin converting factor, subunit 1 (MOAD);	82.54
2io1_B	94	Small ubiquitin-related modifier 3 precursor; SUMO	81.8
1wx8_A	96	Riken cDNA 4931431F19; ubiquitin-like domain, ubiq	80.89

>3w1s_C Ubiquitin-like protein ATG12; ubiquitin fold, E3-like, ATG3 binding, isopeptide bond betwe Gly186 and ATG5 Lys149, ligase; 2.60A {Saccharomyces cerevisiae S288C}

Probab=100.00  E-value=7.4e-43  Score=230.12  Aligned_cols=88  Identities=35%  Similarity=0.622  Sum_probs=74.4

Q ss_pred             CCCCcEEEEeeeCCCCCceeeeeEEecCCchHHHHHHHHHhhcCCceEEEEEcCccCCCcccHHHHHHHHhCCCCEEEEE
Q 034423            8 SSTRKVVVHFRATGGAPILKQAKFKISGSDKFAKVIEFLCRHLGRETLFVYVNSAFSPNPDELVIDLYNNFGFDGKLIVN   87 (95)
Q Consensus         8 ~~~~KV~v~~~~~g~~P~L~k~KflV~~~~t~~~~~~~LRk~L~~~slFlyVnn~f~P~~d~~v~~LY~~~k~dG~Lyi~   87 (95)
                      -.++||+|||+++|++|+|+|+||+||+++||++|+.+|||||+-++|||||||+|+|++|++||+||+|||+||||||+
T Consensus         4 ~~~~Kv~vrfk~~g~~P~l~k~KflV~~~~t~~~~v~~lRkrL~l~alFlyVNn~f~Ps~d~~~~~Ly~~fk~dg~Lyv~   83 (91)
T 3w1s_C            4 MNIQKIQIKFQPIGSIGQLKPSVCKISMSQSFAMVILFLKRRLKMDHVYCYINNSFAPSPQQNIGELWMQFKTNDELIVS   83 (91)
T ss_dssp             --CCEEEEEEEECCC-------EEEEETTSBHHHHHHHHHHHHTCSCCEEEETTTBCCCTTSBHHHHHHHHCBTTEEEEE
T ss_pred             CCCCeEEEEEEecCCCCcccccEEEcCCCCCHHHHHHHHHHhhCCceEEEEECCccCCCcccHHHHHHHHhCCCCEEEEE
Confidence            34579999999999999999999999999999999999999997799999999999999999999999999999999999


Q ss_pred             ecCCcccC
Q 034423           88 YACSMAWG   95 (95)
Q Consensus        88 Ys~~~afG   95 (95)
                      ||+++|||
T Consensus        84 Ys~~~afG   91 (91)
T 3w1s_C           84 YCASVAFG   91 (91)
T ss_dssp             EEC---CC
T ss_pred             EeCccccC
Confidence            99999999

>4gdk_A Ubiquitin-like protein ATG12; protein-protein conjugate, protein-protein complex, ubiquiti protein, E3 ligase, ubiquitin-like fold; 2.70A {Homo sapiens} PDB: 4gdl_A

Probab=100.00  E-value=1e-42  Score=229.24  Aligned_cols=86  Identities=40%  Similarity=0.806  Sum_probs=83.8

Q ss_pred             CCcEEEEeeeCCCCCceeeeeEEecCCchHHHHHHHHHhhc---CCceEEEEEcCccCCCcccHHHHHHHHhCCCCEEEE
Q 034423           10 TRKVVVHFRATGGAPILKQAKFKISGSDKFAKVIEFLCRHL---GRETLFVYVNSAFSPNPDELVIDLYNNFGFDGKLIV   86 (95)
Q Consensus        10 ~~KV~v~~~~~g~~P~L~k~KflV~~~~t~~~~~~~LRk~L---~~~slFlyVnn~f~P~~d~~v~~LY~~~k~dG~Lyi   86 (95)
                      .+||+|||+++|++|+|+|+||+||+++||++|+.+|||||   ++++||+||||+|+|++|++||+||+||++||||||
T Consensus         3 ~~Kv~v~fk~~g~~P~l~k~KflVp~~~tv~~~~~~lRkrL~l~~~~alFlyVnn~~~P~~d~~~~~Ly~~~k~DGfLyv   82 (91)
T 4gdk_A            3 KKKIDILLKAVGDTPIMKTKKWAVERTRTIQGLIDFIKKFLKLVASEQLFIYVNQSFAPSPDQEVGTLYECFGSDGKLVL   82 (91)
T ss_dssp             -CEEEEEEEECSSSCCCSCCEEEEETTCBHHHHHHHHHHHTTCCSSSCCEEEETTTBCCCTTCBHHHHHHHHCBTTEEEE
T ss_pred             CceEEEEEEecCCCCcccccEEEcCCCCCHHHHHHHHHHHhCCCCCCeEEEEECCccCCChhhHHHHHHHHhCCCCEEEE
Confidence            47999999999999999999999999999999999999999   789999999999999999999999999999999999


Q ss_pred             EecCCcccC
Q 034423           87 NYACSMAWG   95 (95)
Q Consensus        87 ~Ys~~~afG   95 (95)
                      +||+++|||
T Consensus        83 ~Ys~~~afG   91 (91)
T 4gdk_A           83 HYCKSQAWG   91 (91)
T ss_dssp             EEESSCCCC
T ss_pred             EEeCccccC
Confidence            999999999

>1wz3_A Autophagy 12B, ATG12B, APG12B; ubiquitin-fold, plant protein; 1.80A {Arabidopsis thaliana} SCOP: d.15.1.7

Probab=100.00  E-value=2.3e-41  Score=224.72  Aligned_cols=91  Identities=80%  Similarity=1.330  Sum_probs=82.2

Q ss_pred             CCCCCCCcEEEEeeeCCCCCceeeeeEEecCCchHHHHHHHHHhhcCCceEEEEEcCccCCCcccHHHHHHHHhCCCCEE
Q 034423            5 DSPSSTRKVVVHFRATGGAPILKQAKFKISGSDKFAKVIEFLCRHLGRETLFVYVNSAFSPNPDELVIDLYNNFGFDGKL   84 (95)
Q Consensus         5 ~~~~~~~KV~v~~~~~g~~P~L~k~KflV~~~~t~~~~~~~LRk~L~~~slFlyVnn~f~P~~d~~v~~LY~~~k~dG~L   84 (95)
                      .++..++||+|+|+++|++|+|+|+||+||+++||++|+.+|||||+-++|||||||+|+|++|++|++||+||||||||
T Consensus         6 ~~~~~~~KV~V~~~~~~~~P~l~k~KflV~~~~t~~~~~~~lRkrL~l~alFlyvn~~~~Ps~d~~m~~LY~~~kdDGfL   85 (96)
T 1wz3_A            6 ESPNSVQKIVVHLRATGGAPILKQSKFKVSGSDKFANVIDFLRRQLHSDSLFVYVNSAFSPNPDESVIDLYNNFGFDGKL   85 (96)
T ss_dssp             ------CEEEEEEEECTTCCCCSCCEEEEETTSBTHHHHHHHHHHHTCSSCEEEEEEEECCCTTSBHHHHHHHHCBTTBE
T ss_pred             CCCCCCCeEEEEEEECCCCCcccccEEEeCCCCcHHHHHHHHHHhcCCceEEEEECCcccCChhhHHHHHHHHhCCCCEE
Confidence            33344689999999999999999999999999999999999999995559999999999999999999999999999999


Q ss_pred             EEEecCCcccC
Q 034423           85 IVNYACSMAWG   95 (95)
Q Consensus        85 yi~Ys~~~afG   95 (95)
                      ||+||+++|||
T Consensus        86 yi~Ys~~~afG   96 (96)
T 1wz3_A           86 VVNYACSMAWG   96 (96)
T ss_dssp             EEEEESCSCC-
T ss_pred             EEEEeCCcccC
Confidence            99999999999

>3rui_B Autophagy-related protein 8; autophagosome formation, non-canonical E1, ATP BI UBL, ATG8, ATG12, ATG10, ATG3, UBL activation, thiolation; 1.91A {Saccharomyces cerevisiae} SCOP: d.15.1.3 PDB: 2kq7_A 2zpn_A 3vxw_A 2kwc_A 2li5_A 3vh3_B 3vh4_B*

Probab=100.00  E-value=8.7e-34  Score=194.12  Aligned_cols=82  Identities=18%  Similarity=0.397  Sum_probs=76.4

Q ss_pred             EEEEeeeCCCCCceeeeeEEecCCchHHHHHHHHHhhc---CCceEEEEEcCccCCCcccHHHHHHHHhCC-CCEEEEEe
Q 034423           13 VVVHFRATGGAPILKQAKFKISGSDKFAKVIEFLCRHL---GRETLFVYVNSAFSPNPDELVIDLYNNFGF-DGKLIVNY   88 (95)
Q Consensus        13 V~v~~~~~g~~P~L~k~KflV~~~~t~~~~~~~LRk~L---~~~slFlyVnn~f~P~~d~~v~~LY~~~k~-dG~Lyi~Y   88 (95)
                      |.|.-.+.+++|+|+|+||+||+++||++|+.+|||||   ++++||||||| ++|++|++||+||++||| ||||||+|
T Consensus        33 VIvE~~~~~~~P~ldk~KflVp~~~tv~qf~~~iRkrl~l~~~~alFl~Vn~-~~p~~~~~m~~lY~~~kdeDGfLyv~Y  111 (118)
T 3rui_B           33 VICEKAEKSDIPEIDKRKYLVPADLTVGQFVYVIRKRIMLPPEKAIFIFVND-TLPPTAALMSAIYQEHKDKDGFLYVTY  111 (118)
T ss_dssp             EEEEECTTCCSCCCSCCEEEEETTSBHHHHHHHHHHHTTCCTTCCEEEEBTT-BCCCTTSBHHHHHHHHCCTTSCEEEEE
T ss_pred             EEEEeCCCCCCCccccceEEcCCCCCHHHHHHHHHHHhCcCCCccEEEEECC-ccCCccchHHHHHHHcCCCCCeEEEEE
Confidence            34444567899999999999999999999999999999   78999999999 599999999999999999 99999999


Q ss_pred             cCCcccC
Q 034423           89 ACSMAWG   95 (95)
Q Consensus        89 s~~~afG   95 (95)
                      |+++|||
T Consensus       112 s~~~~fG  118 (118)
T 3rui_B          112 SGENTFG  118 (118)
T ss_dssp             EECCCBC
T ss_pred             eccccCC
Confidence            9999999

>3h9d_A ATG8, microtubule-associated protein 1A/1B, light chain putative; autophagy, lipidation, ubiquitin-like, S protein; 2.30A {Trypanosoma brucei} SCOP: d.15.1.0

Probab=100.00  E-value=7e-34  Score=194.90  Aligned_cols=82  Identities=20%  Similarity=0.386  Sum_probs=74.9

Q ss_pred             EEEEeeeCCCCCceeeeeEEecCCchHHHHHHHHHhhc---CCceEEEEEcCccCCCcccHHHHHHHHhCC-CCEEEEEe
Q 034423           13 VVVHFRATGGAPILKQAKFKISGSDKFAKVIEFLCRHL---GRETLFVYVNSAFSPNPDELVIDLYNNFGF-DGKLIVNY   88 (95)
Q Consensus        13 V~v~~~~~g~~P~L~k~KflV~~~~t~~~~~~~LRk~L---~~~slFlyVnn~f~P~~d~~v~~LY~~~k~-dG~Lyi~Y   88 (95)
                      |+|.-.+.+++|+|+|+||+||+++||++|+.+||+||   ++++|||||||+ +|++|++||+||++||| ||||||+|
T Consensus        34 VIvEr~~~~~~P~Ldk~KflVp~~~tv~qf~~~iRkrl~l~~~~alFl~Vn~~-~p~~~~~m~~lY~~~kd~DGfLyv~Y  112 (119)
T 3h9d_A           34 IICEKVYNSDIGELDRCKFLVPSDLTVGQFVSVLRKRVQLEAESALFVYTNDT-VLPSSAQMADIYSKYKDEDGFLYMKY  112 (119)
T ss_dssp             EEEEECTTSSCCCCSSCEEEEETTCBHHHHHHHHHHHHTCCTTSCCEEEETTE-ECCTTSBHHHHHHHHCCTTSCEEEEE
T ss_pred             EEEEecCCCCCCccCcceEEcCCCCCHHHHHHHHHHHhCCCccceEEEEECCc-CCCccchHHHHHHHcCCCCCeEEEEE
Confidence            44444567899999999999999999999999999998   899999999997 99999999999999998 99999999


Q ss_pred             cCCcccC
Q 034423           89 ACSMAWG   95 (95)
Q Consensus        89 s~~~afG   95 (95)
                      |+++|||
T Consensus       113 s~e~~fG  119 (119)
T 3h9d_A          113 SGEATFG  119 (119)
T ss_dssp             ECC-CC-
T ss_pred             ecccccC
Confidence            9999999

>3m95_A Autophagy related protein ATG8; alpha slash beta, receptor, transport protein; 2.40A {Bombyx mori} SCOP: d.15.1.3

Probab=100.00  E-value=1.7e-33  Score=194.52  Aligned_cols=82  Identities=17%  Similarity=0.278  Sum_probs=75.7

Q ss_pred             EEEEeeeCCCCCceeeeeEEecCCchHHHHHHHHHhhc---CCceEEEEEcCccCCCcccHHHHHHHHhCC-CCEEEEEe
Q 034423           13 VVVHFRATGGAPILKQAKFKISGSDKFAKVIEFLCRHL---GRETLFVYVNSAFSPNPDELVIDLYNNFGF-DGKLIVNY   88 (95)
Q Consensus        13 V~v~~~~~g~~P~L~k~KflV~~~~t~~~~~~~LRk~L---~~~slFlyVnn~f~P~~d~~v~~LY~~~k~-dG~Lyi~Y   88 (95)
                      |+|.-.+.+++|+|+|+||+||+++||++|+.+||+||   +++|||||||| ++|++|++||+||++||| ||||||+|
T Consensus        39 VIvEr~~~s~lP~LdK~KflVp~~~tv~qf~~~IRkrl~L~~~~alFl~Vnn-~lPs~s~~m~~lY~~~kdeDGfLY~~Y  117 (125)
T 3m95_A           39 VIVEKAPKARLGDLDKKKYLVPSDLTVGQFYFLIRKRIHLRPEDALFFFVNN-VIPPTSATMGSLYQEHHDEDFFLYIAF  117 (125)
T ss_dssp             EEEEECTTCSSCCCSCCEEEEETTSBHHHHHHHHHHHTTCCTTSCCEEEBTT-BCCCTTSBHHHHHHHHCCTTSCEEEEE
T ss_pred             EEEEecCCCCCccccCCEEEcCCCCEeeeehhhhHhhcCCCccccEEEEECC-ccCCccchHHHHHHHcCCCCCeEEEEe
Confidence            44444567889999999999999999999999999999   88999999999 599999999999999998 99999999


Q ss_pred             cCCcccC
Q 034423           89 ACSMAWG   95 (95)
Q Consensus        89 s~~~afG   95 (95)
                      |+++|||
T Consensus       118 s~e~tfG  124 (125)
T 3m95_A          118 SDENVYG  124 (125)
T ss_dssp             ESSSCC-
T ss_pred             cCccccC
Confidence            9999999

>1eo6_A GATE-16, golgi-associated ATPase enhancer of 16 KD; ubiquitin fold, protein binding; 1.80A {Bos taurus} SCOP: d.15.1.3

Probab=99.98  E-value=1.5e-32  Score=187.33  Aligned_cols=85  Identities=18%  Similarity=0.316  Sum_probs=78.6

Q ss_pred             CCcEEEEeee--CCCCCceeeeeEEecCCchHHHHHHHHHhhc---CCceEEEEEcCccCCCcccHHHHHHHHhCC-CCE
Q 034423           10 TRKVVVHFRA--TGGAPILKQAKFKISGSDKFAKVIEFLCRHL---GRETLFVYVNSAFSPNPDELVIDLYNNFGF-DGK   83 (95)
Q Consensus        10 ~~KV~v~~~~--~g~~P~L~k~KflV~~~~t~~~~~~~LRk~L---~~~slFlyVnn~f~P~~d~~v~~LY~~~k~-dG~   83 (95)
                      +.+|-|.+..  .+++|+|+|+||+||.++||++|+.+|||||   ++++||+||||+ +|++|++|++||+||+| |||
T Consensus        26 P~~IPVIve~~~~s~~p~l~k~KflVp~~~tv~~f~~~iRk~l~l~~~~alfl~vn~~-~p~~~~~m~~LY~~~kd~DGf  104 (117)
T 1eo6_A           26 PDRVPVIVEKVSGSQIVDIDKRKYLVPSDITVAQFMWIIRKRIQLPSEKAIFLFVDKT-VPQSSLTMGQLYEKEKDEDGF  104 (117)
T ss_dssp             TTEEEEEEEECTTCSSCCCSCCEEEEETTSBHHHHHHHHHHHHTCCTTSCCEEEBTTB-CCCTTSBHHHHHHHHCCTTSC
T ss_pred             CCeEEEEEEecCCCCCCcccceEEEcCCCCCHHHHHHhhHHhhcCCCCCcEEEEECCE-ecCccchHHHHHHHhCCCCCE
Confidence            4577666665  4679999999999999999999999999999   889999999997 89999999999999999 999


Q ss_pred             EEEEecCCcccC
Q 034423           84 LIVNYACSMAWG   95 (95)
Q Consensus        84 Lyi~Ys~~~afG   95 (95)
                      |||+||+++|||
T Consensus       105 Lyi~Ys~~~~fG  116 (117)
T 1eo6_A          105 LYVAYSGENTFG  116 (117)
T ss_dssp             EEEEEECCCCCC
T ss_pred             EEEEEeCCccCC
Confidence            999999999999

>2zjd_A Microtubule-associated proteins 1A/1B light chain 3B precursor; autophagy, LC3, microtubule-associated protein 1 light chain 3, cytoplasm, cytoplasmic vesicle, lipoprotein; 1.56A {Homo sapiens} SCOP: d.15.1.3 PDB: 2z0e_B 2zzp_B 2z0d_B 1ugm_A 1v49_A 2k6q_A 3eci_A

Probab=99.97  E-value=2.7e-32  Score=189.45  Aligned_cols=85  Identities=20%  Similarity=0.364  Sum_probs=78.6

Q ss_pred             CCcEEEEeee--CCC-CCceeeeeEEecCCchHHHHHHHHHhhc---CCceEEE-EEcCccCCCcccHHHHHHHHhCC-C
Q 034423           10 TRKVVVHFRA--TGG-APILKQAKFKISGSDKFAKVIEFLCRHL---GRETLFV-YVNSAFSPNPDELVIDLYNNFGF-D   81 (95)
Q Consensus        10 ~~KV~v~~~~--~g~-~P~L~k~KflV~~~~t~~~~~~~LRk~L---~~~slFl-yVnn~f~P~~d~~v~~LY~~~k~-d   81 (95)
                      ++||-|.+..  .++ +|+|+|+||+||+++||++|+.+|||||   ++++||| ||||+ +|++|++||+||++||| |
T Consensus        33 P~kIPVIvEk~~~s~~~P~Ldk~KflVp~~~tv~qf~~~iRkrL~l~~~~alFl~~vn~~-~p~~~~~m~~lY~~~kdeD  111 (130)
T 2zjd_A           33 PTKIPVIIERYKGEKQLPVLDKTKFLVPDHVNMSELIKIIRRRLQLNANQAFFLLVNGHS-MVSVSTPISEVYESEKDED  111 (130)
T ss_dssp             TTEEEEEEEECTTCCSSCCCSCCEEEEETTCBHHHHHHHHHHHHTCCTTCCEEEEETTTE-ECCTTSBHHHHHHHHCCTT
T ss_pred             CCceEEEEEEcCCCCcCccccccEEEcCCCCcHHHHHHHHHHHhCCCCCceEEEEEECCc-cCCccchHHHHHHHhCCCC
Confidence            4577776654  466 9999999999999999999999999999   8899999 99997 99999999999999999 9


Q ss_pred             CEEEEEecCCcccC
Q 034423           82 GKLIVNYACSMAWG   95 (95)
Q Consensus        82 G~Lyi~Ys~~~afG   95 (95)
                      |||||+||+++|||
T Consensus       112 GfLyv~Ys~e~tfG  125 (130)
T 2zjd_A          112 GFLYMVYASQETFG  125 (130)
T ss_dssp             SCEEEEEEEHHHHH
T ss_pred             CEEEEEEeCCcccC
Confidence            99999999999998

>2r2q_A Gamma-aminobutyric acid receptor-associated protein-like 1; autophagy, ubiquitin homolog, structural genomics consortium, SGC, microtubule; 1.65A {Homo sapiens} PDB: 2l8j_A 1kjt_A 1kot_A 3d32_A 3dow_A 1gnu_A 1klv_A 1km7_A

Probab=99.96  E-value=2e-29  Score=169.99  Aligned_cols=80  Identities=20%  Similarity=0.297  Sum_probs=74.6

Q ss_pred             CCcEEEEeeeCC--CCCceeeeeEEecCCchHHHHHHHHHhhc---CCceEEEEEcCccCCCcccHHHHHHHHhCC-CCE
Q 034423           10 TRKVVVHFRATG--GAPILKQAKFKISGSDKFAKVIEFLCRHL---GRETLFVYVNSAFSPNPDELVIDLYNNFGF-DGK   83 (95)
Q Consensus        10 ~~KV~v~~~~~g--~~P~L~k~KflV~~~~t~~~~~~~LRk~L---~~~slFlyVnn~f~P~~d~~v~~LY~~~k~-dG~   83 (95)
                      ++||-|.+...+  ++|+|+|+||+||.++||++|+.+||+||   ++++||+||||+ +|++|++|++||++|+| |||
T Consensus        25 p~~IPVive~~~~~~~p~l~k~KflVp~~~tv~~~~~~iRk~l~l~~~~alfl~vn~~-~p~~~~~m~~LY~~~kd~DGf  103 (110)
T 2r2q_A           25 PDRVPVIVEKAPKARVPDLDKRKYLVPSDLTVGQFYFLIRKRIHLRPEDALFFFVNNT-IPPTSATMGQLYEDNHEEDYF  103 (110)
T ss_dssp             TTEEEEEEEECTTCCSCCCSCCEEEEETTCBHHHHHHHHHHHTTCCTTSCCEEEBTTB-CCCTTSBHHHHHHHHCCTTSC
T ss_pred             CCceEEEEEecCCCCCCccceeEEEeCCCCcHHHHHHHHHHHhcCCCCCcEEEEECCE-ecCccChHHHHHHHcCCCCCE
Confidence            468888887764  79999999999999999999999999999   889999999997 89999999999999999 999


Q ss_pred             EEEEecC
Q 034423           84 LIVNYAC   90 (95)
Q Consensus        84 Lyi~Ys~   90 (95)
                      |||+||+
T Consensus       104 Lyi~Ys~  110 (110)
T 2r2q_A          104 LYVAYSD  110 (110)
T ss_dssp             EEEEEEC
T ss_pred             EEEEEeC
Confidence            9999985

>1uh6_A Ubiquitin-like 5; beta-grAsp fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1

Probab=93.94  E-value=0.54  Score=30.40  Aligned_cols=80  Identities=13%  Similarity=0.096  Sum_probs=54.2

Q ss_pred             CCCCCCCCCcEEEEeeeCCCCCceeeeeEEecCCchHHHHHHHHHhhc--CCceEEEEEcCccCCCcccHHHHHHHHhCC
Q 034423            3 ATDSPSSTRKVVVHFRATGGAPILKQAKFKISGSDKFAKVIEFLCRHL--GRETLFVYVNSAFSPNPDELVIDLYNNFGF   80 (95)
Q Consensus         3 ~~~~~~~~~KV~v~~~~~g~~P~L~k~KflV~~~~t~~~~~~~LRk~L--~~~slFlyVnn~f~P~~d~~v~~LY~~~k~   80 (95)
                      |+.++...+++.|.++...+    ++-.+.|.++.|+++|-..|..+-  +.+..=|..++. ....+.++++ |.- ++
T Consensus        19 ~~~~~~~~~mm~I~VKtl~G----k~i~lev~p~dTV~~lK~~Ia~k~Gip~~qQrLi~~Gk-~L~D~~TL~d-ygI-~~   91 (100)
T 1uh6_A           19 PRGSEGAATMIEVVCNDRLG----KKVRVKCNTDDTIGDLKKLIAAQTGTRWNKIVLKKWYT-IFKDHVSLGD-YEI-HD   91 (100)
T ss_dssp             CCCCSSCCCEEEEEEECSSS----SCEEEEEETTSBHHHHHHHHHHHHCCCGGGCEEEETTE-ECCSSCBHHH-HTC-CT
T ss_pred             cccCCCCCCeEEEEEECCCC----CEEEEEeCCCCcHHHHHHHHHHHhCCCHHHEEEEECCE-ECCCCCCHHH-cCC-CC
Confidence            44455555679999887643    345588999999999999998887  545555556665 3455667775 221 23


Q ss_pred             CCEEEEEec
Q 034423           81 DGKLIVNYA   89 (95)
Q Consensus        81 dG~Lyi~Ys   89 (95)
                      +..|.+.|.
T Consensus        92 gstlhL~~~  100 (100)
T 1uh6_A           92 GMNLELYYQ  100 (100)
T ss_dssp             TEEEEEECC
T ss_pred             CCEEEEEeC
Confidence            568888883

>2dyo_A Autophagy protein 5; ubiquitin-fold, herix-bundle, protein turnover/protein turnover complex; 1.97A {Saccharomyces cerevisiae} PDB: 2dym_A

Probab=92.22  E-value=0.061  Score=41.02  Aligned_cols=51  Identities=16%  Similarity=0.197  Sum_probs=36.6

Q ss_pred             hHHHHH--HHHHhhc-CCceEEEEEcCccCCCcccHHHHHHHHhCC-CCEEEEEec
Q 034423           38 KFAKVI--EFLCRHL-GRETLFVYVNSAFSPNPDELVIDLYNNFGF-DGKLIVNYA   89 (95)
Q Consensus        38 t~~~~~--~~LRk~L-~~~slFlyVnn~f~P~~d~~v~~LY~~~k~-dG~Lyi~Ys   89 (95)
                      |+++++  ..+---+ ++.+..+.|++. .|+.|+.+..||++++- ||||||.=.
T Consensus       231 TLgd~L~~~~~lp~lf~~~~~~viihGI-~vpl~~pl~wl~~~l~~pDgFLhIvv~  285 (297)
T 2dyo_A          231 TLKDIEGDILDVKEGINGNDVMVICQGI-EIPWHMLLYDLYSKLRSFDGFLYITLV  285 (297)
T ss_dssp             BTGGGHHHHSCTTTC----CEEEEETTE-EECTTCBHHHHHHHHCCTTSCEEEEEE
T ss_pred             CHHHHHhhhhhccccCCCCCCeEEEeCc-cCCCCCcHHHHHHHhcCCCcEEEEEEE
Confidence            666665  3221112 445578999995 78899999999999998 999999754

>2k8h_A Small ubiquitin protein; SUMO, post-translational modifier, signaling protein; NMR {Trypanosoma brucei}

Probab=92.13  E-value=1.2  Score=29.00  Aligned_cols=62  Identities=19%  Similarity=0.342  Sum_probs=45.2

Q ss_pred             CCCCCcEEEEeeeCCCCCceeeeeEEecCCchHHHHHHHHHhhc--C-CceEEEEEcCccCCCcccHHHHH
Q 034423            7 PSSTRKVVVHFRATGGAPILKQAKFKISGSDKFAKVIEFLCRHL--G-RETLFVYVNSAFSPNPDELVIDL   74 (95)
Q Consensus         7 ~~~~~KV~v~~~~~g~~P~L~k~KflV~~~~t~~~~~~~LRk~L--~-~~slFlyVnn~f~P~~d~~v~~L   74 (95)
                      +...++|+|+++....-    .-.|.|..+.++..++...+++.  + ++--|+|=+.  ...++.+.++|
T Consensus        21 ~~~~~~I~IkVk~~~g~----~i~fkVk~~t~l~kL~~ay~ek~gi~~~~~rfiFdG~--~L~~~~Tp~dl   85 (110)
T 2k8h_A           21 KEETALVAVKVVNADGA----EMFFRIKSRTALKKLIDTYCKKQGISRNSVRFLFDGT--PIDETKTPEEL   85 (110)
T ss_dssp             CCCCCCEEEEEEETTSC----CEEEEECTTSSHHHHHHHHHHHHTCCSSSCEEESSSC--BCCSSSHHHHH
T ss_pred             CCCCCeEEEEEECCCCC----EEEEEECCCChHHHHHHHHHHHhCCCcccEEEEECCE--EcCCCCCHHHc
Confidence            33347899999874433    34799999999999999999888  3 4445555444  45677888887

>4gdk_B Autophagy protein 5; protein-protein conjugate, protein-protein complex, ubiquiti protein, E3 ligase, ubiquitin-like fold; 2.70A {Homo sapiens} PDB: 4gdl_B

Probab=91.81  E-value=0.3  Score=36.85  Aligned_cols=53  Identities=11%  Similarity=0.206  Sum_probs=39.4

Q ss_pred             CchHHHHHHHHHhhc-CC----ceEEEEEcCccCCCcccHHHHHHHHhCC-CCEEEEEec
Q 034423           36 SDKFAKVIEFLCRHL-GR----ETLFVYVNSAFSPNPDELVIDLYNNFGF-DGKLIVNYA   89 (95)
Q Consensus        36 ~~t~~~~~~~LRk~L-~~----~slFlyVnn~f~P~~d~~v~~LY~~~k~-dG~Lyi~Ys   89 (95)
                      ..|+++++.-+---+ ++    ....+.+++. .++.|+.+.+||++++- ||||||.=+
T Consensus       212 ~~TLg~~L~~~lP~lf~~~~~~~~~~viihGI-~~pl~~pl~~l~~~l~y~DgFLhI~v~  270 (275)
T 4gdk_B          212 LHTLGDLLKEVCPSAIDPEDGEKKNQVMIHGI-EPMLETPLQWLSEHLSYPDNFLHISII  270 (275)
T ss_dssp             BCBHHHHHHHHCGGGCC------CEEEEBTTB-CCCTTSBHHHHHHHSCCTTSCEEEEEE
T ss_pred             cccHHHHHHHhcccccCCCcccccceEEEeCC-cCCCCCCHHHHHHhccCCCceEEEEEE
Confidence            358887766553333 22    3466788884 78999999999999999 999998644

>3vqi_A ATG5; autophagy, E3-like, ubiquitin-fold, PRE-autoph structure, protein turnover, protein transport; HET: EPE; 2.50A {Kluyveromyces marxianus}

Probab=91.41  E-value=0.15  Score=38.47  Aligned_cols=48  Identities=17%  Similarity=0.180  Sum_probs=36.1

Q ss_pred             CchHHHHHHHHHhhcCC--ceEEEEEcCccCCCcccHHHHHHHHhCC-CCEEEEE
Q 034423           36 SDKFAKVIEFLCRHLGR--ETLFVYVNSAFSPNPDELVIDLYNNFGF-DGKLIVN   87 (95)
Q Consensus        36 ~~t~~~~~~~LRk~L~~--~slFlyVnn~f~P~~d~~v~~LY~~~k~-dG~Lyi~   87 (95)
                      ..|+++++   +..|++  ....+.+++. .++.|+.+.+||+++.- ||||||.
T Consensus       222 ~~TLg~~L---~~~lp~l~~~~~~iihGi-~vp~~~pl~~l~~~~~y~DgFLhiv  272 (274)
T 3vqi_A          222 ELSVAELL---DSIKLSSDGVKSVIIQGI-DVSIEDNIFELYDIFASIDGFLYLV  272 (274)
T ss_dssp             -CBHHHHH---HTTTCCC--CCEEEETTE-EEETTSBHHHHHHHHCCTTSCEEEE
T ss_pred             cccHHHHH---HHhccccccceEEEEeCc-cCCCCCcHHHHHHHccCCCceEEEE
Confidence            56776664   444653  2344889994 78999999999999998 9999985

>3v6c_B Ubiquitin; structural genomics, structural genomics consortium, SGC, UB protease, hydrolase-signaling protein complex; 1.70A {Homo sapiens} PDB: 3v6e_B

Probab=90.42  E-value=1.3  Score=26.83  Aligned_cols=69  Identities=9%  Similarity=0.132  Sum_probs=44.8

Q ss_pred             CCcEEEEeeeCCCCCceeeeeEEecCCchHHHHHHHHHhhc--CCceEEEEEcCccCCCcccHHHHHHHHhCC--CCEEE
Q 034423           10 TRKVVVHFRATGGAPILKQAKFKISGSDKFAKVIEFLCRHL--GRETLFVYVNSAFSPNPDELVIDLYNNFGF--DGKLI   85 (95)
Q Consensus        10 ~~KV~v~~~~~g~~P~L~k~KflV~~~~t~~~~~~~LRk~L--~~~slFlyVnn~f~P~~d~~v~~LY~~~k~--dG~Ly   85 (95)
                      ...+.|.++..++    +.-.+.|+.+.|++++...|.++.  +.+..-|+.++. ....+.++++    |+.  +..|+
T Consensus        15 ~~~m~i~Vk~~~g----~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~Gk-~L~D~~tL~~----~gi~~g~~i~   85 (91)
T 3v6c_B           15 RGSMQIFVNTLTG----THITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGK-QLEDGRTLSD----YNIQKESTLH   85 (91)
T ss_dssp             CCSEEEEEECTTS----CEEEEEECTTCBHHHHHHHHHHHHCCCGGGCEEEETTE-ECCTTCBTGG----GTCCTTCEEE
T ss_pred             CCeEEEEEEeCCC----CEEEEEECCCCCHHHHHHHHHhhhCCChhhEEEEECCe-ECCCcCcHHH----CCCCCCCEEE
Confidence            3667777775443    233578999999999999998887  444444555765 3455556554    443  55665


Q ss_pred             EE
Q 034423           86 VN   87 (95)
Q Consensus        86 i~   87 (95)
                      +.
T Consensus        86 l~   87 (91)
T 3v6c_B           86 LV   87 (91)
T ss_dssp             EE
T ss_pred             EE
Confidence            53

>1ip9_A BEM1 protein; ubiquitin alpha/beta roll, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 1ipg_A 2kfk_A

Probab=90.39  E-value=1.2  Score=28.48  Aligned_cols=49  Identities=10%  Similarity=0.198  Sum_probs=33.7

Q ss_pred             CCCCCCcEEEEeeeCCCCCceeeeeEEecCCchHHHHHHHHHhhcCCceEEEEE
Q 034423            6 SPSSTRKVVVHFRATGGAPILKQAKFKISGSDKFAKVIEFLCRHLGRETLFVYV   59 (95)
Q Consensus         6 ~~~~~~KV~v~~~~~g~~P~L~k~KflV~~~~t~~~~~~~LRk~L~~~slFlyV   59 (95)
                      ..++..++.|.|-=.+++=.|     .||.+.+++++-.-|+.||+.+..-+++
T Consensus         6 ~~pq~~~~KVK~yy~DDIiAI-----rvP~di~~~~L~dKi~~RLk~~~~~l~~   54 (85)
T 1ip9_A            6 STSGLKTTKIKFYYKDDIFAL-----MLKGDTTYKELRSKIAPRIDTDNFKLQT   54 (85)
T ss_dssp             CCCCCCCEEEEECBTTCCEEE-----EECSCCCHHHHHHHHHHHHTSSCEEEEE
T ss_pred             CCCccCceEEEEEecCcEEEE-----ECCCCCCHHHHHHHHHHHhcccceEEEE
Confidence            334445555555555676444     7999999999999999999544444444

>1wx7_A Ubiquilin 3; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.1

Probab=89.69  E-value=2.5  Score=26.39  Aligned_cols=72  Identities=6%  Similarity=0.094  Sum_probs=47.3

Q ss_pred             CCcEEEEeeeCCCCCceeeeeEEecCCchHHHHHHHHHhhc--CCceEEEEEcCccCCCcccHHHHHHHHhCCCCEEEEE
Q 034423           10 TRKVVVHFRATGGAPILKQAKFKISGSDKFAKVIEFLCRHL--GRETLFVYVNSAFSPNPDELVIDLYNNFGFDGKLIVN   87 (95)
Q Consensus        10 ~~KV~v~~~~~g~~P~L~k~KflV~~~~t~~~~~~~LRk~L--~~~slFlyVnn~f~P~~d~~v~~LY~~~k~dG~Lyi~   87 (95)
                      ...+.|.++..++     +..+.|+.+.|+++|...|.++.  +.+..-|+.++.. ...+.+++++  .-+++..|+|.
T Consensus        15 ~~~m~I~Vk~~~g-----~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~-L~D~~tL~~~--gi~~g~~i~l~   86 (106)
T 1wx7_A           15 PHLIKVTVKTPKD-----KEDFSVTDTCTIQQLKEEISQRFKAHPDQLVLIFAGKI-LKDPDSLAQC--GVRDGLTVHLV   86 (106)
T ss_dssp             SSEEEEEEECSSC-----EEEEEEETTCCHHHHHHHHHHHHTCCTTTEEEEETTEE-CCTTSCHHHH--TCCTTEEEEEE
T ss_pred             CceEEEEEEeCCC-----cEEEEECCCCcHHHHHHHHHHHHCcChhhEEEEECCEE-CCCcCcHHHc--CCCCCCEEEEE
Confidence            4678888776553     23688999999999999998887  4455556667653 3556666553  11224567665


Q ss_pred             ec
Q 034423           88 YA   89 (95)
Q Consensus        88 Ys   89 (95)
                      ..
T Consensus        87 ~~   88 (106)
T 1wx7_A           87 IK   88 (106)
T ss_dssp             EC
T ss_pred             Ec
Confidence            53

>2jxx_A Nfatc2-interacting protein; nuclear factor of activated T-cells, cytoplasmic 2- interacting protein, ubiquitin like homologue; NMR {Homo sapiens}

Probab=89.57  E-value=2.3  Score=27.22  Aligned_cols=65  Identities=11%  Similarity=0.219  Sum_probs=45.5

Q ss_pred             CCCCCCcEEEEeeeCCCCCceeeeeEEecCCchHHHHHHHHHhhc--CCceEEEEEcCccCCCcccHHHHH
Q 034423            6 SPSSTRKVVVHFRATGGAPILKQAKFKISGSDKFAKVIEFLCRHL--GRETLFVYVNSAFSPNPDELVIDL   74 (95)
Q Consensus         6 ~~~~~~KV~v~~~~~g~~P~L~k~KflV~~~~t~~~~~~~LRk~L--~~~slFlyVnn~f~P~~d~~v~~L   74 (95)
                      .++..++|+|+++...+-   +.-.|+|..+.+++.++..-+++.  +..++-++.++. .-.++++..+|
T Consensus        19 ~~~~~~~I~LkV~~~dg~---~~v~fkIk~~t~l~kLm~aY~~~~g~~~~~vrF~FDG~-rI~~~~TP~dL   85 (97)
T 2jxx_A           19 STETSQQLQLRVQGKEKH---QTLEVSLSRDSPLKTLMSHYEEAMGLSGRKLSFFFDGT-KLSGRELPADL   85 (97)
T ss_dssp             -CCSCSEEEEEEEESSSS---CEEEEEEETTSCHHHHHHHHHHHTTCSSSCCEEEETTE-ECCSCSCHHHH
T ss_pred             CCCCCCeEEEEEEcCCCC---EEEEEEECCCChHHHHHHHHHHHHCCCcccEEEEECCE-EcCCCCCHHHc
Confidence            334447899999874332   244699999999999999999888  334554444654 45667788777

>2eke_C Ubiquitin-like protein SMT3; UBC9, SUMO binding motif, SBM, ligase/protein binding complex; 1.90A {Saccharomyces cerevisiae} SCOP: d.15.1.1

Probab=88.28  E-value=1.2  Score=28.90  Aligned_cols=61  Identities=16%  Similarity=0.329  Sum_probs=42.3

Q ss_pred             CCCCCcEEEEeeeCCCCCceeeeeEEecCCchHHHHHHHHHhhc--CCce-EEEEEcCccCCCcccHHHHH
Q 034423            7 PSSTRKVVVHFRATGGAPILKQAKFKISGSDKFAKVIEFLCRHL--GRET-LFVYVNSAFSPNPDELVIDL   74 (95)
Q Consensus         7 ~~~~~KV~v~~~~~g~~P~L~k~KflV~~~~t~~~~~~~LRk~L--~~~s-lFlyVnn~f~P~~d~~v~~L   74 (95)
                      ++..++|+|+++. .+    +...|+|..+.++..++...+++.  +..+ -|+| ++. .-.++.|.++|
T Consensus        26 ~~~~~~I~IkV~~-~g----~~i~fkIk~tt~l~kL~~ay~ek~gi~~~~~rF~F-dG~-rl~~~~Tp~dl   89 (106)
T 2eke_C           26 VKPETHINLKVSD-GS----SEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLY-DGI-RIQADQTPEDL   89 (106)
T ss_dssp             CCCCSEEEEEEEC-SS----CEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEE-TTE-ECCTTCCTTTT
T ss_pred             CCCCCeEEEEEec-CC----cEEEEEeCCCCHHHHHHHHHHHHhCCCcccEEEEE-CCe-EcCCCCCHHHc
Confidence            3344789999886 32    356799999999999999999888  3344 4555 543 23455566655

>1wyw_B Ubiquitin-like protein SMT3C; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 1y8r_C* 2asq_A 2pe6_B 1a5r_A 2kqs_A 3kyc_D* 3rzw_C

Probab=86.47  E-value=3.2  Score=25.60  Aligned_cols=71  Identities=11%  Similarity=0.152  Sum_probs=47.4

Q ss_pred             CcEEEEeeeCCCCCceeeeeEEecCCchHHHHHHHHHhhc--CCceEEEEEcCccCCCcccHHHHHHHHhCCCCEEEEEe
Q 034423           11 RKVVVHFRATGGAPILKQAKFKISGSDKFAKVIEFLCRHL--GRETLFVYVNSAFSPNPDELVIDLYNNFGFDGKLIVNY   88 (95)
Q Consensus        11 ~KV~v~~~~~g~~P~L~k~KflV~~~~t~~~~~~~LRk~L--~~~slFlyVnn~f~P~~d~~v~~LY~~~k~dG~Lyi~Y   88 (95)
                      ..+.|.++...+    +...+.|..+.|++.+...|..+.  +.+..-|+.++. ....+.+++++  .-+++..|.+..
T Consensus        20 ~~m~I~Vk~~~g----~~~~l~v~~~~tv~~lK~~i~~~~gip~~~qrLif~Gk-~L~d~~tl~dy--~i~~g~~I~l~~   92 (97)
T 1wyw_B           20 EYIKLKVIGQDS----SEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQ-RIADNHTPKEL--GMEEEDVIEVYQ   92 (97)
T ss_dssp             CEEEEEEECTTC----CEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEETTE-ECCTTCCHHHH--TCCTTCEEEEEE
T ss_pred             CcEEEEEEeCCC----CEEEEEECCCCcHHHHHHHHHHHHCCChhhEEEEECCe-EcCCCCCHHHC--CCCCCCEEEEEE
Confidence            568888776433    234689999999999999998887  545555555665 34566677764  122355666654

>3a4r_A Nfatc2-interacting protein; ubiquitin fold, coiled coil, cytoplasm, methylation, nucleus, transcription; 1.00A {Mus musculus} PDB: 3a4s_C 3rd2_A

Probab=85.97  E-value=4  Score=24.49  Aligned_cols=59  Identities=10%  Similarity=0.222  Sum_probs=42.5

Q ss_pred             CcEEEEeeeCCCCCceeeeeEEecCCchHHHHHHHHHhhc--C-CceEEEEEcCccCCCcccHHHHH
Q 034423           11 RKVVVHFRATGGAPILKQAKFKISGSDKFAKVIEFLCRHL--G-RETLFVYVNSAFSPNPDELVIDL   74 (95)
Q Consensus        11 ~KV~v~~~~~g~~P~L~k~KflV~~~~t~~~~~~~LRk~L--~-~~slFlyVnn~f~P~~d~~v~~L   74 (95)
                      ++|+|+++...+-   +.-.|.|..+.+++.++...+++.  + ++--|+| ++. .-.++++.++|
T Consensus         6 ~~i~ikV~~~~g~---~~i~~~i~~~t~l~kl~~~y~~~~gi~~~~~rf~f-dG~-~l~~~~Tp~~l   67 (79)
T 3a4r_A            6 QELRLRVQGKEKH---QMLEISLSPDSPLKVLMSHYEEAMGLSGHKLSFFF-DGT-KLSGKELPADL   67 (79)
T ss_dssp             CCEEEEEECSSTT---CEEEEEECTTSCHHHHHHHHHHHHTCTTCCCEEEE-TTE-ECCSCCCHHHH
T ss_pred             CEEEEEEEeCCCC---EEEEEEECCCChHHHHHHHHHHHhCCCcccEEEEE-CCE-EcCCCCCHHHc
Confidence            5899998863331   134799999999999999999988  3 4444555 553 35667788877

>3mtn_B UBA80, ubcep1, ubiquitin variant UBV.21.4; ubiquitin-specific protease activity, hydrolase, ubiquitin B structural genomics consortium, SGC; 2.70A {Homo sapiens} SCOP: d.15.1.1

Probab=84.58  E-value=3.7  Score=23.78  Aligned_cols=70  Identities=11%  Similarity=0.104  Sum_probs=44.1

Q ss_pred             cEEEEeeeCCCCCceeeeeEEecCCchHHHHHHHHHhhc--CCceEEEEEcCccCCCcccHHHHHHHHhCCCCEEEEEe
Q 034423           12 KVVVHFRATGGAPILKQAKFKISGSDKFAKVIEFLCRHL--GRETLFVYVNSAFSPNPDELVIDLYNNFGFDGKLIVNY   88 (95)
Q Consensus        12 KV~v~~~~~g~~P~L~k~KflV~~~~t~~~~~~~LRk~L--~~~slFlyVnn~f~P~~d~~v~~LY~~~k~dG~Lyi~Y   88 (95)
                      ++.|.++...+    +...+.|+.+.|++++...|.++.  +.+..-|+.++. ....+.++++.  .-+++..|++..
T Consensus         3 ~m~i~vk~~~g----~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~qrL~~~g~-~L~d~~tL~~~--~i~~~~~l~l~~   74 (85)
T 3mtn_B            3 HMQIFVKTLTG----KTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGK-QLEDGRTLSDY--NIQKWSTLFLLL   74 (85)
T ss_dssp             CEEEEEECTTS----CEEEEEECTTCBHHHHHHHHHHHHCCCGGGCEEEETTE-ECCTTSBTGGG--TCCTTCEEEEEC
T ss_pred             eEEEEEEcCCC----CEEEEEECCCCCHHHHHHHHHHHHCcChHHEEEEECCE-ECCCCCCHHHc--CCCCCCEEEEEE
Confidence            34555554332    234578999999999999999888  555555666775 34455565542  112356777654

>4hcn_B Polyubiquitin, ubiquitin; ubiquitin/NEDD8 deamidase, NEDD8, protein binding; 2.60A {Saccharomyces cerevisiae}

Probab=84.30  E-value=1.2  Score=27.55  Aligned_cols=68  Identities=12%  Similarity=0.189  Sum_probs=43.2

Q ss_pred             CcEEEEeeeCCCCCceeeeeEEecCCchHHHHHHHHHhhc--CCceEEEEEcCccCCCcccHHHHHHHHhCC--CCEEEE
Q 034423           11 RKVVVHFRATGGAPILKQAKFKISGSDKFAKVIEFLCRHL--GRETLFVYVNSAFSPNPDELVIDLYNNFGF--DGKLIV   86 (95)
Q Consensus        11 ~KV~v~~~~~g~~P~L~k~KflV~~~~t~~~~~~~LRk~L--~~~slFlyVnn~f~P~~d~~v~~LY~~~k~--dG~Lyi   86 (95)
                      ..+.|.++...+    +.-.+.|+.+.|+++|...|.++.  +.+..-|+.++. ....+.++++    |+.  +..|++
T Consensus        21 ~~m~I~Vk~~~g----~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk-~L~D~~tL~~----~~i~~g~~i~l   91 (98)
T 4hcn_B           21 RPMQIFVKTLTG----KTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGK-QLEDGRTLSD----YNIQKESTLHL   91 (98)
T ss_dssp             -CCEEEEEETTC----CEEEEECCTTCBHHHHHHHHHHHHCCCGGGCEEEETTE-ECCTTCBSGG----GTCCTTEEEEE
T ss_pred             CeEEEEEEeCCC----CEEEEEECCCCcHHHHHHHHHHHhCCChhHEEEEECCE-ECCCCCcHHH----CCCCCCCEEEE
Confidence            567777765432    234578999999999999998887  444444556775 3455556554    443  445555


Q ss_pred             E
Q 034423           87 N   87 (95)
Q Consensus        87 ~   87 (95)
                      .
T Consensus        92 ~   92 (98)
T 4hcn_B           92 V   92 (98)
T ss_dssp             E
T ss_pred             E
Confidence            4

>2d07_B Ubiquitin-like protein SMT3B; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 2rpq_A 2awt_A 2io3_B 2iyd_B 1u4a_A 2k1f_A

Probab=83.93  E-value=2  Score=26.72  Aligned_cols=60  Identities=13%  Similarity=0.269  Sum_probs=41.9

Q ss_pred             CCcEEEEeeeCCCCCceeeeeEEecCCchHHHHHHHHHhhc--CCceEEEEEcCccCCCcccHHHHH
Q 034423           10 TRKVVVHFRATGGAPILKQAKFKISGSDKFAKVIEFLCRHL--GRETLFVYVNSAFSPNPDELVIDL   74 (95)
Q Consensus        10 ~~KV~v~~~~~g~~P~L~k~KflV~~~~t~~~~~~~LRk~L--~~~slFlyVnn~f~P~~d~~v~~L   74 (95)
                      .++|+|+++...+    +.-.|.|..+.++..++...+++.  +.+++-+..++. .-.++.+.++|
T Consensus        15 ~~~i~ikV~~~~g----~~i~~~v~~~t~l~kl~~~y~~~~gi~~~~~rf~fdG~-~l~~~~Tp~dl   76 (93)
T 2d07_B           15 NDHINLKVAGQDG----SVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQ-PINETDTPAQL   76 (93)
T ss_dssp             CCEEEEEEECTTS----CEEEEEEETTSCHHHHHHHHHHHHTCCGGGEEEEETTE-ECCTTCCTTTT
T ss_pred             CCeEEEEEECCCC----CEEEEEEccCCHHHHHHHHHHHHhCCCccceEEEECCE-EcCCCCCHHHc
Confidence            3689999886333    234799999999999999999988  444555544553 34555566554

>2io0_B Small ubiquitin-related modifier 2 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.30A {Homo sapiens} SCOP: d.15.1.1

Probab=83.46  E-value=2.2  Score=26.69  Aligned_cols=59  Identities=14%  Similarity=0.271  Sum_probs=41.2

Q ss_pred             CcEEEEeeeCCCCCceeeeeEEecCCchHHHHHHHHHhhc--CCceEEEEEcCccCCCcccHHHHH
Q 034423           11 RKVVVHFRATGGAPILKQAKFKISGSDKFAKVIEFLCRHL--GRETLFVYVNSAFSPNPDELVIDL   74 (95)
Q Consensus        11 ~KV~v~~~~~g~~P~L~k~KflV~~~~t~~~~~~~LRk~L--~~~slFlyVnn~f~P~~d~~v~~L   74 (95)
                      ++|+|+++...+    +.-.|+|.++.+++.++...+++.  +.+++-+..++. .-.++++.++|
T Consensus         4 ~~i~ikVk~~~g----~~v~~~vk~~t~l~kl~~~y~~~~gi~~~~~rf~FdG~-~l~~~~Tp~dl   64 (91)
T 2io0_B            4 DHINLKVAGQDG----SVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQ-PINETDTPAQL   64 (91)
T ss_dssp             CEEEEEEECTTS----CEEEEEEETTSCTHHHHHHHHHHTTCCSTTEEEEETTE-ECCTTCCTTTT
T ss_pred             CeEEEEEECCCC----CEEEEEECCCChHHHHHHHHHHHhCCCcccEEEEECCE-EcCCCCCHHHc
Confidence            578999886333    345799999999999999999988  434444444543 34556666655

>3dbh_I NEDD8; cell cycle, activating enzyme, apoptosis, membrane, UBL conjugation pathway, ATP-binding, ligase, nucleotide- binding, polymorphism; 2.85A {Homo sapiens} SCOP: d.15.1.1 PDB: 3dbr_I 3dbl_I

Probab=83.45  E-value=5  Score=23.52  Aligned_cols=70  Identities=13%  Similarity=0.140  Sum_probs=44.6

Q ss_pred             CcEEEEeeeCCCCCceeeeeEEecCCchHHHHHHHHHhhc--CCceEEEEEcCccCCCcccHHHHHHHHhCCCCEEEEE
Q 034423           11 RKVVVHFRATGGAPILKQAKFKISGSDKFAKVIEFLCRHL--GRETLFVYVNSAFSPNPDELVIDLYNNFGFDGKLIVN   87 (95)
Q Consensus        11 ~KV~v~~~~~g~~P~L~k~KflV~~~~t~~~~~~~LRk~L--~~~slFlyVnn~f~P~~d~~v~~LY~~~k~dG~Lyi~   87 (95)
                      ..+.|.++..++    +.-.+.|+.+.|++++...|..+.  +.+..-|+.++. ....+.++++.  .-+++..|++.
T Consensus        11 ~~m~i~vk~~~g----~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrL~~~G~-~L~d~~tL~~~--~i~~~~~i~l~   82 (88)
T 3dbh_I           11 GSMLIKVKTLTG----KEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGK-QMNDEKTAADY--KILGGSVLHLV   82 (88)
T ss_dssp             CCEEEEEECTTS----CEEEEEECTTCBHHHHHHHHHHHHCCCGGGCCEEETTE-ECCTTSBGGGG--TCCTTCEEEEC
T ss_pred             CcEEEEEEcCCC----CEEEEEECCCCCHHHHHHHHHHHHCcCHHHEEEEECCe-ECCCCCcHHHc--CCCCCCEEEEE
Confidence            456777765433    233578999999999999998887  444444555775 34456666653  12235566664

>2uyz_B Small ubiquitin-related modifier 1; sumoylation, cell division, nuclear protein, ubiquitin-like modifier, UBL conjugation pathway; 1.4A {Homo sapiens} SCOP: d.15.1.1 PDB: 2vrr_B 2iy0_B 2iy1_B 2g4d_B 2las_A 2io2_B 1z5s_B 3uip_B* 1tgz_B* 2bf8_B

Probab=82.57  E-value=5.2  Score=23.12  Aligned_cols=70  Identities=11%  Similarity=0.152  Sum_probs=44.4

Q ss_pred             cEEEEeeeCCCCCceeeeeEEecCCchHHHHHHHHHhhc--CCceEEEEEcCccCCCcccHHHHHHHHhCCCCEEEEEe
Q 034423           12 KVVVHFRATGGAPILKQAKFKISGSDKFAKVIEFLCRHL--GRETLFVYVNSAFSPNPDELVIDLYNNFGFDGKLIVNY   88 (95)
Q Consensus        12 KV~v~~~~~g~~P~L~k~KflV~~~~t~~~~~~~LRk~L--~~~slFlyVnn~f~P~~d~~v~~LY~~~k~dG~Lyi~Y   88 (95)
                      .+.|.++...+    +.-.+.|..+.|++.+...+..+.  +.+..-|+.++. ....+.+++++  .-+++..|++..
T Consensus         3 ~m~i~vk~~~g----~~~~~~v~~~~tv~~lk~~i~~~~gi~~~~qrL~~~G~-~L~d~~tl~~~--~i~~~~~i~l~~   74 (79)
T 2uyz_B            3 YIKLKVIGQDS----SEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQ-RIADNHTPKEL--GMEEEDVIEVYQ   74 (79)
T ss_dssp             EEEEEEECTTC----CEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEETTE-ECCTTCCHHHH--TCCTTEEEEEEE
T ss_pred             eEEEEEECCCC----CEEEEEECCCChHHHHHHHHHHHHCCCcccEEEEECCE-EeCCCCCHHHc--CCCCCCEEEEEE
Confidence            45666665332    234689999999999999998887  444555555665 34566677764  122244566543

>3rpf_C Molybdopterin converting factor, subunit 1 (MOAD); MCSG, PSI-biology, structural genomics, midwest center for S genomics, transferase; 1.90A {Helicobacter pylori}

Probab=82.54  E-value=1.3  Score=26.23  Aligned_cols=52  Identities=15%  Similarity=0.143  Sum_probs=35.6

Q ss_pred             cEEEEeeeCCCCCceeeeeEEecCCchHHHHHHHHHhhcCC-----ceEEEEEcCccCCCcccH
Q 034423           12 KVVVHFRATGGAPILKQAKFKISGSDKFAKVIEFLCRHLGR-----ETLFVYVNSAFSPNPDEL   70 (95)
Q Consensus        12 KV~v~~~~~g~~P~L~k~KflV~~~~t~~~~~~~LRk~L~~-----~slFlyVnn~f~P~~d~~   70 (95)
                      +|+|+|-+.  +-.   ..+.+ ...|+++++..|..+ +.     +.+-+.||+.+++..|+.
T Consensus         2 ~v~V~~fa~--l~~---~~~e~-~~~tv~~ll~~L~~~-~~l~~~l~~~~vavN~~~v~~~~~~   58 (74)
T 3rpf_C            2 MVEVRFFGP--IKE---ENFFI-KANDLKELRAILQEK-EGLKEWLGVCAIALNDHLIDNLNTP   58 (74)
T ss_dssp             EEEEEECTT--CCC---CCEEE-ECSSHHHHHHHHHTC-TTTTTTTTTCEEEESSSEECCTTCC
T ss_pred             EEEEEEEee--cce---eEEee-CCCcHHHHHHHHHHC-cCHHHHhhccEEEECCEEcCCCCcC
Confidence            577877542  222   34666 668999999999765 32     568899999875655543

>2io1_B Small ubiquitin-related modifier 3 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.60A {Homo sapiens} SCOP: d.15.1.1

Probab=81.80  E-value=2.2  Score=26.69  Aligned_cols=59  Identities=14%  Similarity=0.271  Sum_probs=41.3

Q ss_pred             CcEEEEeeeCCCCCceeeeeEEecCCchHHHHHHHHHhhc--CCceEEEEEcCccCCCcccHHHHH
Q 034423           11 RKVVVHFRATGGAPILKQAKFKISGSDKFAKVIEFLCRHL--GRETLFVYVNSAFSPNPDELVIDL   74 (95)
Q Consensus        11 ~KV~v~~~~~g~~P~L~k~KflV~~~~t~~~~~~~LRk~L--~~~slFlyVnn~f~P~~d~~v~~L   74 (95)
                      ++|+|+++.-.+    +.-.|+|.++.+++.++...+++.  +.+++-+..+.. .-.++++.+++
T Consensus         6 ~~i~ikVk~~~g----~~i~~~v~~~t~l~kl~~~y~~~~gi~~~~~rf~FdG~-~l~~~~Tp~dl   66 (94)
T 2io1_B            6 DHINLKVAGQDG----SVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQ-PINETDTPAQL   66 (94)
T ss_dssp             CEEEEEEECTTS----CEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEETTE-ECCTTCCTTTT
T ss_pred             CeEEEEEECCCC----CEEEEEECCCCHHHHHHHHHHHHhCCCcccEEEEECCE-EcCCCCCHHHc
Confidence            589999886333    244799999999999999999988  444544444543 34555666654

>1wx8_A Riken cDNA 4931431F19; ubiquitin-like domain, ubiquilin 1-like, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1

Probab=80.89  E-value=7.1  Score=23.55  Aligned_cols=68  Identities=10%  Similarity=0.216  Sum_probs=43.5

Q ss_pred             CCcEEEEeeeCCCCCceeeeeEEecCCchHHHHHHHHHhhc--CCceEEEEEcCccCCCcccHHHHHHHHhCC--CCEEE
Q 034423           10 TRKVVVHFRATGGAPILKQAKFKISGSDKFAKVIEFLCRHL--GRETLFVYVNSAFSPNPDELVIDLYNNFGF--DGKLI   85 (95)
Q Consensus        10 ~~KV~v~~~~~g~~P~L~k~KflV~~~~t~~~~~~~LRk~L--~~~slFlyVnn~f~P~~d~~v~~LY~~~k~--dG~Ly   85 (95)
                      ...+.|.++..|.     .-.+.|+.+.|++++...|..+.  +.+..-|+.+... ...+.++++    |+.  +..|+
T Consensus        15 ~~~m~i~Vk~~g~-----~~~~~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~Gk~-L~D~~tL~~----~gi~~g~~i~   84 (96)
T 1wx8_A           15 SRIIRVSVKTPQD-----CHEFFLAENSNVRRFKKQISKYLHCNADRLVLIFTGKI-LRDQDILSQ----RGILDGSTVH   84 (96)
T ss_dssp             SCEEEEEEECSSS-----EEEEEEETTCCHHHHHHHHHHHTCSCTTTBCCEETTEE-CCTTSCHHH----HTCCTTEEEE
T ss_pred             CCcEEEEEEECCe-----EEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEEECCEE-CCCcCCHHH----CCCCCCCEEE
Confidence            3677777776532     33578999999999999998888  3333334446653 355666665    444  34555


Q ss_pred             EE
Q 034423           86 VN   87 (95)
Q Consensus        86 i~   87 (95)
                      +.
T Consensus        85 l~   86 (96)
T 1wx8_A           85 VV   86 (96)
T ss_dssp             CC
T ss_pred             EE
Confidence            43

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	95
d1wz3a1	84	d.15.1.7 (A:10-93) Autophagy-related protein 12b (	8e-46
d2zjda1	119	d.15.1.3 (A:2-120) Microtubule-associated proteins	2e-10
d3d32a1	118	d.15.1.3 (A:1-118) GABA(A) receptor associated pro	1e-07

>d1wz3a1 d.15.1.7 (A:10-93) Autophagy-related protein 12b (APG12b) {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 84

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: APG12-like
domain: Autophagy-related protein 12b (APG12b)
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score =  139 bits (353), Expect = 8e-46
 Identities = 69/84 (82%), Positives = 77/84 (91%)

Query: 11 RKVVVHFRATGGAPILKQAKFKISGSDKFAKVIEFLCRHLGRETLFVYVNSAFSPNPDEL 70
          +K+VVH RATGGAPILKQ+KFK+SGSDKFA VI+FL R L  ++LFVYVNSAFSPNPDE 
Sbjct: 1  QKIVVHLRATGGAPILKQSKFKVSGSDKFANVIDFLRRQLHSDSLFVYVNSAFSPNPDES 60

Query: 71 VIDLYNNFGFDGKLIVNYACSMAW 94
          VIDLYNNFGFDGKL+VNYACSMAW
Sbjct: 61 VIDLYNNFGFDGKLVVNYACSMAW 84

>d2zjda1 d.15.1.3 (A:2-120) Microtubule-associated proteins 1A/1B light chain 3B {Human (Homo sapiens) [TaxId: 9606]} Length = 119

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: GABARAP-like
domain: Microtubule-associated proteins 1A/1B light chain 3B
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.9 bits (122), Expect = 2e-10
 Identities = 17/87 (19%), Positives = 37/87 (42%), Gaps = 4/87 (4%)

Query: 13  VVVHFRATGGAPILKQAKFKISGSDKFAKVIEFLCRHLGRE---TLFVYVNSAFSPNPDE 69
           ++  ++     P+L + KF +      +++I+ + R L        F+ VN     +   
Sbjct: 33  IIERYKGEKQLPVLDKTKFLVPDHVNMSELIKIIRRRLQLNANQAFFLLVNGHSMVSVST 92

Query: 70  LVIDLYNNFG-FDGKLIVNYACSMAWG 95
            + ++Y +    DG L + YA    +G
Sbjct: 93  PISEVYESEKDEDGFLYMVYASQETFG 119

>d3d32a1 d.15.1.3 (A:1-118) GABA(A) receptor associated protein GABARAP {Human (Homo sapiens) [TaxId: 9606]} Length = 118

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: GABARAP-like
domain: GABA(A) receptor associated protein GABARAP
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.6 bits (103), Expect = 1e-07
 Identities = 13/76 (17%), Positives = 27/76 (35%), Gaps = 5/76 (6%)

Query: 24  PILKQAKFKISGSDKFAKVIEFLCRHLG---RETLFVYVNSAFSPNPDELVIDLYNNFG- 79
             L + K+ +       +    + + +     + LF +VN+   P     +  LY     
Sbjct: 44  GDLDKKKYLVPSDLTVGQFYFLIRKRIHLRAEDALFFFVNNVIPPTS-ATMGQLYQEHHE 102

Query: 80  FDGKLIVNYACSMAWG 95
            D  L + Y+    +G
Sbjct: 103 EDFFLYIAYSDESVYG 118

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	95
d1wz3a1	84	Autophagy-related protein 12b (APG12b) {Thale cres	100.0
d2zjda1	119	Microtubule-associated proteins 1A/1B light chain	99.97
d3d32a1	118	GABA(A) receptor associated protein GABARAP {Human	99.97
d1eo6a_	116	Golgi-associated ATPase enhancer of 16 kD, Gate-16	99.96
d1wx8a1	83	4931431F19Rik {Mouse (Mus musculus) [TaxId: 10090]	91.74
d2uyzb1	77	SUMO-1 (smt3 homologue) {Human (Homo sapiens) [Tax	89.78
d1euvb_	79	SUMO-1 (smt3 homologue) {Baker's yeast (Saccharomy	89.56
d1j8ca_	103	Ubiquitin-like N-terminal domain of PLIC-2 {Human	86.58
d1m94a_	73	Ubiquitin-like modifier protein hub1 {Baker's yeas	84.52

>d1wz3a1 d.15.1.7 (A:10-93) Autophagy-related protein 12b (APG12b) {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: APG12-like
domain: Autophagy-related protein 12b (APG12b)
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=100.00  E-value=1.1e-39  Score=210.75  Aligned_cols=84  Identities=82%  Similarity=1.353  Sum_probs=83.1

Q ss_pred             CcEEEEeeeCCCCCceeeeeEEecCCchHHHHHHHHHhhcCCceEEEEEcCccCCCcccHHHHHHHHhCCCCEEEEEecC
Q 034423           11 RKVVVHFRATGGAPILKQAKFKISGSDKFAKVIEFLCRHLGRETLFVYVNSAFSPNPDELVIDLYNNFGFDGKLIVNYAC   90 (95)
Q Consensus        11 ~KV~v~~~~~g~~P~L~k~KflV~~~~t~~~~~~~LRk~L~~~slFlyVnn~f~P~~d~~v~~LY~~~k~dG~Lyi~Ys~   90 (95)
                      +||+|||+|+|+||+|+++||+|+++++|+.++.||||+|+.|+||+||||+|+|+||+.+|+||+||+.||.|+++||.
T Consensus         1 ~KV~v~fk~iG~aPilk~~~~kv~~~~~f~~vi~FLrk~Lk~dsvf~Yin~sFaPspDe~vg~Ly~~f~~~gkLvv~Y~~   80 (84)
T d1wz3a1           1 QKIVVHLRATGGAPILKQSKFKVSGSDKFANVIDFLRRQLHSDSLFVYVNSAFSPNPDESVIDLYNNFGFDGKLVVNYAC   80 (84)
T ss_dssp             CEEEEEEEECTTCCCCSCCEEEEETTSBTHHHHHHHHHHHTCSSCEEEEEEEECCCTTSBHHHHHHHHCBTTBEEEEEES
T ss_pred             CcEEEEEEecCCCcccccceEEECCCCchHHHHHHHHHHhcCCeEEEEEccccCCChhhHHHHHHHhcCCCCEEEEEEec
Confidence            59999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             Cccc
Q 034423           91 SMAW   94 (95)
Q Consensus        91 ~~af   94 (95)
                      ++||
T Consensus        81 t~Aw   84 (84)
T d1wz3a1          81 SMAW   84 (84)
T ss_dssp             CSCC
T ss_pred             cccC
Confidence            9998

>d2zjda1 d.15.1.3 (A:2-120) Microtubule-associated proteins 1A/1B light chain 3B {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: GABARAP-like
domain: Microtubule-associated proteins 1A/1B light chain 3B
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=1.4e-32  Score=186.61  Aligned_cols=77  Identities=22%  Similarity=0.405  Sum_probs=73.8

Q ss_pred             eCCCCCceeeeeEEecCCchHHHHHHHHHhhc---CCceEEEEEcCccCCCcccHHHHHHHHhCC-CCEEEEEecCCccc
Q 034423           19 ATGGAPILKQAKFKISGSDKFAKVIEFLCRHL---GRETLFVYVNSAFSPNPDELVIDLYNNFGF-DGKLIVNYACSMAW   94 (95)
Q Consensus        19 ~~g~~P~L~k~KflV~~~~t~~~~~~~LRk~L---~~~slFlyVnn~f~P~~d~~v~~LY~~~k~-dG~Lyi~Ys~~~af   94 (95)
                      ..+++|+|+++||+||.++|++||+.+||+||   +++|||+|||+.++|+++++||+||++||| ||||||+||+++||
T Consensus        39 ~~~~lp~Ldk~KfLVp~d~tv~qf~~~iRkrl~l~~~~alFlfvn~~~~p~~~~~i~~lY~~~kdeDGfLYi~Ys~entF  118 (119)
T d2zjda1          39 GEKQLPVLDKTKFLVPDHVNMSELIKIIRRRLQLNANQAFFLLVNGHSMVSVSTPISEVYESEKDEDGFLYMVYASQETF  118 (119)
T ss_dssp             TCCSSCCCSCCEEEEETTCBHHHHHHHHHHHHTCCTTCCEEEEETTTEECCTTSBHHHHHHHHCCTTSCEEEEEEEHHHH
T ss_pred             CCCcCccccceEEEEecCccHHHHHHHHHHHhCCCCcceEEEEEcCCccCCchhHHHHHHHHcCCCCCeEEEEEeccccC
Confidence            35679999999999999999999999999999   789999999988899999999999999998 99999999999999


Q ss_pred             C
Q 034423           95 G   95 (95)
Q Consensus        95 G   95 (95)
                      |
T Consensus       119 G  119 (119)
T d2zjda1         119 G  119 (119)
T ss_dssp             H
T ss_pred             C
Confidence            8

>d3d32a1 d.15.1.3 (A:1-118) GABA(A) receptor associated protein GABARAP {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: GABARAP-like
domain: GABA(A) receptor associated protein GABARAP
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=2.2e-31  Score=180.56  Aligned_cols=81  Identities=17%  Similarity=0.297  Sum_probs=74.6

Q ss_pred             EEEeeeCCCCCceeeeeEEecCCchHHHHHHHHHhhc---CCceEEEEEcCccCCCcccHHHHHHHHhCC-CCEEEEEec
Q 034423           14 VVHFRATGGAPILKQAKFKISGSDKFAKVIEFLCRHL---GRETLFVYVNSAFSPNPDELVIDLYNNFGF-DGKLIVNYA   89 (95)
Q Consensus        14 ~v~~~~~g~~P~L~k~KflV~~~~t~~~~~~~LRk~L---~~~slFlyVnn~f~P~~d~~v~~LY~~~k~-dG~Lyi~Ys   89 (95)
                      .|.-.+.+++|.|+++||+||.++|++||+.+||+||   +++||||||||+ +|+++++||+||++||| ||||||+||
T Consensus        34 Ive~~~~s~lp~ldk~KflVp~d~tv~qf~~~iRkrl~l~~~~alflfvn~~-~~~~~~ti~~lY~~~kdeDGfLYi~Ys  112 (118)
T d3d32a1          34 IVEKAPKARIGDLDKKKYLVPSDLTVGQFYFLIRKRIHLRAEDALFFFVNNV-IPPTSATMGQLYQEHHEEDFFLYIAYS  112 (118)
T ss_dssp             EEEECTTCCSCCCSCSEEEEETTCBHHHHHHHHHHHHTCCTTSCCEEEBTTB-CCCTTCBHHHHHHHHCCTTSCEEEEEE
T ss_pred             EEEEcCCCCCcccccceEEecCCccHHHHHHHHHHHhCCCccceEEEEECCc-ccCccccHHHHHHHhCCCCcEEEEEEe
Confidence            3333456789999999999999999999999999999   799999999997 58889999999999998 999999999


Q ss_pred             CCcccC
Q 034423           90 CSMAWG   95 (95)
Q Consensus        90 ~~~afG   95 (95)
                      +++|||
T Consensus       113 ~entFG  118 (118)
T d3d32a1         113 DESVYG  118 (118)
T ss_dssp             SCTTCC
T ss_pred             cccccC
Confidence            999999

>d1eo6a_ d.15.1.3 (A:) Golgi-associated ATPase enhancer of 16 kD, Gate-16 {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: GABARAP-like
domain: Golgi-associated ATPase enhancer of 16 kD, Gate-16
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.96  E-value=3.7e-30  Score=174.10  Aligned_cols=81  Identities=17%  Similarity=0.320  Sum_probs=75.0

Q ss_pred             EEEeeeCCCCCceeeeeEEecCCchHHHHHHHHHhhc---CCceEEEEEcCccCCCcccHHHHHHHHhCC-CCEEEEEec
Q 034423           14 VVHFRATGGAPILKQAKFKISGSDKFAKVIEFLCRHL---GRETLFVYVNSAFSPNPDELVIDLYNNFGF-DGKLIVNYA   89 (95)
Q Consensus        14 ~v~~~~~g~~P~L~k~KflV~~~~t~~~~~~~LRk~L---~~~slFlyVnn~f~P~~d~~v~~LY~~~k~-dG~Lyi~Ys   89 (95)
                      .|.-.+.+++|.|+++||+||.++|++||+..||+||   +++|||+||||+ +|+++.+||+||+.||| ||||||+||
T Consensus        32 Ive~~~~~~l~~ldk~KfLVP~dltv~qf~~vIRkrl~l~~~~alflfv~~~-l~~~s~~i~~lY~~~KdeDGfLYi~Ys  110 (116)
T d1eo6a_          32 IVEKVSGSQIVDIDKRKYLVPSDITVAQFMWIIRKRIQLPSEKAIFLFVDKT-VPQSSLTMGQLYEKEKDEDGFLYVAYS  110 (116)
T ss_dssp             EEEECTTCSSCCCSCCEEEEETTSBHHHHHHHHHHHHTCCTTSCCEEEBTTB-CCCTTSBHHHHHHHHCCTTSCEEEEEE
T ss_pred             EEEECCcCcCCcccCcEEeecCCCcHHHHHHHHHHHcCCCccceEEEEECCc-ccchhhhHHHHHHHcCCCCcEEEEEEe
Confidence            3333456789999999999999999999999999999   789999999997 89999999999999999 999999999


Q ss_pred             CCcccC
Q 034423           90 CSMAWG   95 (95)
Q Consensus        90 ~~~afG   95 (95)
                      +++|||
T Consensus       111 ~entFG  116 (116)
T d1eo6a_         111 GENTFG  116 (116)
T ss_dssp             CCCCCC
T ss_pred             ccccCC
Confidence            999999

>d1wx8a1 d.15.1.1 (A:8-90) 4931431F19Rik {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: 4931431F19Rik
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=91.74  E-value=0.4  Score=27.78  Aligned_cols=65  Identities=9%  Similarity=0.234  Sum_probs=44.4

Q ss_pred             CCCCCCCCCCCcEEEEeeeCCCCCceeeeeEEecCCchHHHHHHHHHhhc--CCceEEEEEcCccCCCcccHHHH
Q 034423            1 MAATDSPSSTRKVVVHFRATGGAPILKQAKFKISGSDKFAKVIEFLCRHL--GRETLFVYVNSAFSPNPDELVID   73 (95)
Q Consensus         1 ~~~~~~~~~~~KV~v~~~~~g~~P~L~k~KflV~~~~t~~~~~~~LRk~L--~~~slFlyVnn~f~P~~d~~v~~   73 (95)
                      |++.++.+  +.+.|..+..++     +..+.|.++.|+++|-..|..+.  +.+..-|+.++..+ ..+.++++
T Consensus         1 ~~g~~~~~--~~i~v~Vk~~~~-----~~~i~v~~~~tV~~lK~~I~~~~~v~~~~qrL~f~Gk~L-~d~~tL~~   67 (83)
T d1wx8a1           1 VSGREPSS--RIIRVSVKTPQD-----CHEFFLAENSNVRRFKKQISKYLHCNADRLVLIFTGKIL-RDQDILSQ   67 (83)
T ss_dssp             CCCSCCCS--CEEEEEEECSSS-----EEEEEEETTCCHHHHHHHHHHHTCSCTTTBCCEETTEEC-CTTSCHHH
T ss_pred             CCCCCCCC--CeEEEEEEcCCC-----cEEEEECCCChHHHHHHHHHHHhCCChhHEEEEEEhhcc-ccCCcHHH
Confidence            34444444  467777765443     45689999999999999999998  55555566677644 45556665

>d2uyzb1 d.15.1.1 (B:20-96) SUMO-1 (smt3 homologue) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: SUMO-1 (smt3 homologue)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.78  E-value=0.53  Score=26.85  Aligned_cols=59  Identities=12%  Similarity=0.189  Sum_probs=41.8

Q ss_pred             CcEEEEeeeCCCCCceeeeeEEecCCchHHHHHHHHHhhc--CCceEEEEEcCccCCCcccHHHHH
Q 034423           11 RKVVVHFRATGGAPILKQAKFKISGSDKFAKVIEFLCRHL--GRETLFVYVNSAFSPNPDELVIDL   74 (95)
Q Consensus        11 ~KV~v~~~~~g~~P~L~k~KflV~~~~t~~~~~~~LRk~L--~~~slFlyVnn~f~P~~d~~v~~L   74 (95)
                      ++|+|+++...+    +.-.|+|..+.+++.++....++.  +...+=+..|+. .-.++.+.++|
T Consensus         1 e~I~ikv~~~dg----~~v~f~v~~~t~l~kl~~~y~~~~~~~~~~~~f~fdG~-~l~~~~T~~~l   61 (77)
T d2uyzb1           1 EYIKLKVIGQDS----SEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQ-RIADNHTPKEL   61 (77)
T ss_dssp             CEEEEEEECTTC----CEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEETTE-ECCTTCCHHHH
T ss_pred             CEEEEEEECCCC----CEEEEEECCCChHHHHHHHHHHHhCCChhHEEEEECCE-ECCCCCCHHHc
Confidence            367888876443    234699999999999999998888  445555556664 34555677776

>d1euvb_ d.15.1.1 (B:) SUMO-1 (smt3 homologue) {Baker's yeast (Saccharomyces cerevisiae), smt3 [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: SUMO-1 (smt3 homologue)
species: Baker's yeast (Saccharomyces cerevisiae), smt3 [TaxId: 4932]

Probab=89.56  E-value=0.24  Score=28.47  Aligned_cols=58  Identities=14%  Similarity=0.228  Sum_probs=41.1

Q ss_pred             CcEEEEeeeCCCCCceeeeeEEecCCchHHHHHHHHHhhc--CCceEEEEEcCccCCCcccHHHHH
Q 034423           11 RKVVVHFRATGGAPILKQAKFKISGSDKFAKVIEFLCRHL--GRETLFVYVNSAFSPNPDELVIDL   74 (95)
Q Consensus        11 ~KV~v~~~~~g~~P~L~k~KflV~~~~t~~~~~~~LRk~L--~~~slFlyVnn~f~P~~d~~v~~L   74 (95)
                      ++|+|+.+..|+     ...|+|..+.+++.++..++++.  +.+.+-|.-|+. .-.++.+++++
T Consensus         3 ~~I~ikv~~~~~-----~~~f~v~~~~~~~~l~~~~~~~~~i~~~~~~l~f~G~-~l~~~~T~~~~   62 (79)
T d1euvb_           3 THINLKVSDGSS-----EIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGI-RIQADQTPEDL   62 (79)
T ss_dssp             SEEEEEEESSSC-----EEEEEEETTSCTHHHHHHHHHHTTCCGGGEEEEETTE-ECCTTCCTTTT
T ss_pred             cEEEEEECCCCe-----EEEEEECCCCcHHHHHHHHHHHhCCChHhEEEEECCE-EeCCCCCHHHC
Confidence            578898876432     24599999999999999999998  444555555765 34555566543

>d1j8ca_ d.15.1.1 (A:) Ubiquitin-like N-terminal domain of PLIC-2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like N-terminal domain of PLIC-2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.58  E-value=1.3  Score=26.48  Aligned_cols=57  Identities=9%  Similarity=0.267  Sum_probs=42.0

Q ss_pred             CcEEEEeeeCCCCCceeeeeEEecCCchHHHHHHHHHhhc--CCceEEEEEcCccCCCcccHHHH
Q 034423           11 RKVVVHFRATGGAPILKQAKFKISGSDKFAKVIEFLCRHL--GRETLFVYVNSAFSPNPDELVID   73 (95)
Q Consensus        11 ~KV~v~~~~~g~~P~L~k~KflV~~~~t~~~~~~~LRk~L--~~~slFlyVnn~f~P~~d~~v~~   73 (95)
                      .-|.|+++..+     ++..+.|+.+.|+++|-.-|..+.  +.+..-|+.++.. ...+.++++
T Consensus        31 ~~i~V~Vk~~~-----~~~~i~V~~~~tV~~LK~~I~~~~gi~~~~qrLi~~Gk~-L~D~~tL~~   89 (103)
T d1j8ca_          31 KIIKVTVKTPK-----EKEEFAVPENSSVQQFKEAISKRFKSQTDQLVLIFAGKI-LKDQDTLIQ   89 (103)
T ss_dssp             CCEEEEEECSS-----CEEEEEECTTCCHHHHHHHHHHHHCSCSSSEEEEETTEE-ESTTSCGGG
T ss_pred             CeEEEEEECCC-----ccEEEEECCCChHHHHHHHHHHHHCcCHHHeeeeeeeec-ccCCCcHHH
Confidence            46777776533     234689999999999999999998  6667777788863 455656554

>d1m94a_ d.15.1.1 (A:) Ubiquitin-like modifier protein hub1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like modifier protein hub1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=84.52  E-value=1.7  Score=24.27  Aligned_cols=57  Identities=12%  Similarity=0.199  Sum_probs=42.4

Q ss_pred             eeeeEEecCCchHHHHHHHHHhhc--CCceEEEEEcCccCCCcccHHHHHHHHhCC--CCEEEEEe
Q 034423           27 KQAKFKISGSDKFAKVIEFLCRHL--GRETLFVYVNSAFSPNPDELVIDLYNNFGF--DGKLIVNY   88 (95)
Q Consensus        27 ~k~KflV~~~~t~~~~~~~LRk~L--~~~slFlyVnn~f~P~~d~~v~~LY~~~k~--dG~Lyi~Y   88 (95)
                      +.-.+.|.++.|++++-..|..+.  +.+..-|+.++..+ ..+.++++    |+.  +..|.+.|
T Consensus        12 k~~~v~V~~~~tV~~lK~~I~~~~~i~~~~q~Li~~Gk~L-~d~~tL~~----y~I~~gstl~L~~   72 (73)
T d1m94a_          12 KKVRVKCLAEDSVGDFKKVLSLQIGTQPNKIVLQKGGSVL-KDHISLED----YEVHDQTNLELYY   72 (73)
T ss_dssp             EEEEEEECTTSBHHHHHHHHHHHHCCTTTSEEEESSSCEE-CTTSBHHH----HTCCTTEEEEEEE
T ss_pred             CEEEEEECCcCcHHHHHHHHHHhhcccccEEEEEEEeEEe-cccCcHHH----cCCCCCCEEEEEE
Confidence            345689999999999999998888  55666677777644 56667766    555  55777776