Citrus Sinensis ID: 034427

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-----
MASGSLSSTWTPKENKLFEKALALYDKETPDRWQNIAKAVGGGKTVEEVKKHYEILVDDLNRIEAGRVPIPNYKSPGSSYNAANEERILKNLKLQ
cccccccccccHHHHHHHHHHHHHccccccHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHccccccccccccccccccHHHHHHHHHcccc
cccccccccccHHHHHHHHHHHHHccccccHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHccccccccccccccccccccHHHHHHHcccc
masgslsstwtpkeNKLFEKALALYDKETPDRWQNIAKAVGGGKTVEEVKKHYEILVDDLnrieagrvpipnykspgssynaaNEERILKNLKLQ
masgslsstwtpkenKLFEKALALYDKETPDRWQNIAKavgggktveeVKKHYEILVDdlnrieagrvpipnykspgssynaaneerilknlklq
MASGSLSSTWTPKENKLFEKALALYDKETPDRWQNIAKAVGGGKTVEEVKKHYEILVDDLNRIEAGRVPIPNYKSPGSSYNAANEERILKNLKLQ
****************LFEKALALYDKETPDRWQNIAKAVGGGKTVEEVKKHYEILVDDLNRIEAGRVPI*************************
***********PKENKLFEKALALYDKETPDRWQNIAKAVGGGKTVEEVKKHYEILVDDLNRIEAGRVPIP*****************LKNLK**
**********TPKENKLFEKALALYDKETPDRWQNIAKAVGGGKTVEEVKKHYEILVDDLNRIEAGRVPIPNYKSPGSSYNAANEERILKNLKLQ
*********WTPKENKLFEKALALYDKETPDRWQNIAKAVGGGKTVEEVKKHYEILVDDLNRIEAGRVPIPNYKS********************
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooohhhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
oooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiii
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MASGSLSSTWTPKENKLFEKALALYDKETPDRWQNIAKAVGGGKTVEEVKKHYEILVDDLNRIEAGRVPIPNYKSPGSSYNAANEERILKNLKLQ
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query95 2.2.26 [Sep-21-2011]
Q1A17397 Protein RADIALIS-like 6 O yes no 0.978 0.958 0.622 1e-26
F4JVB8100 Protein RADIALIS-like 1 O no no 0.894 0.85 0.579 3e-25
Q58FS393 Transcription factor RADI N/A no 0.968 0.989 0.562 3e-23
Q6NNN081 Protein RADIALIS-like 3 O no no 0.736 0.864 0.633 2e-22
Q9SIJ5101 Protein RADIALIS-like 2 O no no 0.894 0.841 0.516 2e-20
Q8GW75100 Protein RADIALIS-like 5 O no no 0.863 0.82 0.551 2e-20
Q1G3C477 Protein RADIALIS-like 4 O no no 0.652 0.805 0.619 7e-17
Q8S9H7 307 Transcription factor DIVA N/A no 0.715 0.221 0.492 1e-12
P54103621 DnaJ homolog subfamily C yes no 0.684 0.104 0.378 7e-05
Q1RMH9621 DnaJ homolog subfamily C yes no 0.652 0.099 0.396 0.0001
>sp|Q1A173|RADL6_ARATH Protein RADIALIS-like 6 OS=Arabidopsis thaliana GN=RL6 PE=2 SV=1 Back     alignment and function desciption
 Score =  118 bits (295), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 61/98 (62%), Positives = 77/98 (78%), Gaps = 5/98 (5%)

Query: 1  MASGSLSST--WTPKENKLFEKALALYDKETPDRWQNIAKAVGGGKTVEEVKKHYEILVD 58
          MAS S SS   WT  +NK+FE+ALA+YDK+TPDRW N+AKAV GGKTVEEVK+HY+ILV+
Sbjct: 1  MASNSRSSISPWTFSQNKMFERALAVYDKDTPDRWHNVAKAV-GGKTVEEVKRHYDILVE 59

Query: 59 DLNRIEAGRVPIPNYKSPGSSYNAAN--EERILKNLKL 94
          DL  IE GRVP+PNYK+  S+  + N  + R +KNLK+
Sbjct: 60 DLINIETGRVPLPNYKTFESNSRSINDFDTRKMKNLKI 97
Probable transcription factor.
Arabidopsis thaliana (taxid: 3702)
>sp|F4JVB8|RADL1_ARATH Protein RADIALIS-like 1 OS=Arabidopsis thaliana GN=RL1 PE=2 SV=1 Back     alignment and function description
>sp|Q58FS3|RAD_ANTMA Transcription factor RADIALIS OS=Antirrhinum majus GN=RAD PE=1 SV=1 Back     alignment and function description
>sp|Q6NNN0|RADL3_ARATH Protein RADIALIS-like 3 OS=Arabidopsis thaliana GN=RL3 PE=2 SV=1 Back     alignment and function description
>sp|Q9SIJ5|RADL2_ARATH Protein RADIALIS-like 2 OS=Arabidopsis thaliana GN=RL2 PE=2 SV=1 Back     alignment and function description
>sp|Q8GW75|RADL5_ARATH Protein RADIALIS-like 5 OS=Arabidopsis thaliana GN=RL5 PE=3 SV=1 Back     alignment and function description
>sp|Q1G3C4|RADL4_ARATH Protein RADIALIS-like 4 OS=Arabidopsis thaliana GN=RL4 PE=2 SV=1 Back     alignment and function description
>sp|Q8S9H7|DIV_ANTMA Transcription factor DIVARICATA OS=Antirrhinum majus GN=DIVARICATA PE=2 SV=1 Back     alignment and function description
>sp|P54103|DNJC2_MOUSE DnaJ homolog subfamily C member 2 OS=Mus musculus GN=Dnajc2 PE=1 SV=2 Back     alignment and function description
>sp|Q1RMH9|DNJC2_BOVIN DnaJ homolog subfamily C member 2 OS=Bos taurus GN=DNAJC2 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query95
356544482100 PREDICTED: uncharacterized protein LOC10 0.978 0.93 0.68 3e-30
35947534696 PREDICTED: uncharacterized protein LOC10 0.989 0.979 0.690 5e-30
22408035592 predicted protein [Populus trichocarpa] 0.852 0.880 0.740 7e-29
35653879392 PREDICTED: dnaJ homolog subfamily C memb 0.905 0.934 0.677 9e-28
44946675396 PREDICTED: protein RADIALIS-like 6-like 0.957 0.947 0.65 2e-27
35995075096 MYB-related protein [Aegilops speltoides 0.989 0.979 0.583 3e-27
22410340776 predicted protein [Populus trichocarpa] 0.747 0.934 0.788 4e-27
25553865495 DNA binding protein, putative [Ricinus c 0.957 0.957 0.626 6e-26
25553685380 transcription factor, putative [Ricinus 0.778 0.925 0.733 7e-26
22413382285 predicted protein [Populus trichocarpa] 0.821 0.917 0.682 9e-26
>gi|356544482|ref|XP_003540679.1| PREDICTED: uncharacterized protein LOC100785292 [Glycine max] Back     alignment and taxonomy information
 Score =  135 bits (340), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 68/100 (68%), Positives = 80/100 (80%), Gaps = 7/100 (7%)

Query: 1  MASGSLS------STWTPKENKLFEKALALYDKETPDRWQNIAKAVGGGKTVEEVKKHYE 54
          MAS SLS      S+WTPK+NKLFEKALA YDK+TPDRWQN+AKAVGG K+ +EVK+HYE
Sbjct: 1  MASSSLSKQKASDSSWTPKQNKLFEKALAKYDKDTPDRWQNVAKAVGG-KSADEVKRHYE 59

Query: 55 ILVDDLNRIEAGRVPIPNYKSPGSSYNAANEERILKNLKL 94
          IL++DL  IE+G VP+P YKS GSS N   EER+LK LKL
Sbjct: 60 ILLEDLRHIESGHVPLPKYKSTGSSTNVEEEERLLKYLKL 99

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|359475346|ref|XP_003631666.1| PREDICTED: uncharacterized protein LOC100853961 [Vitis vinifera] gi|297741469|emb|CBI32600.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|224080355|ref|XP_002306110.1| predicted protein [Populus trichocarpa] gi|222849074|gb|EEE86621.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|356538793|ref|XP_003537885.1| PREDICTED: dnaJ homolog subfamily C member 2-like [Glycine max] Back     alignment and taxonomy information
>gi|449466753|ref|XP_004151090.1| PREDICTED: protein RADIALIS-like 6-like [Cucumis sativus] gi|449526345|ref|XP_004170174.1| PREDICTED: protein RADIALIS-like 6-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|359950750|gb|AEV91165.1| MYB-related protein [Aegilops speltoides] Back     alignment and taxonomy information
>gi|224103407|ref|XP_002313044.1| predicted protein [Populus trichocarpa] gi|222849452|gb|EEE86999.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|255538654|ref|XP_002510392.1| DNA binding protein, putative [Ricinus communis] gi|223551093|gb|EEF52579.1| DNA binding protein, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|255536853|ref|XP_002509493.1| transcription factor, putative [Ricinus communis] gi|223549392|gb|EEF50880.1| transcription factor, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|224133822|ref|XP_002327689.1| predicted protein [Populus trichocarpa] gi|222836774|gb|EEE75167.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query95
TAIR|locus:202518297 RL6 "RAD-like 6" [Arabidopsis 0.978 0.958 0.622 1.9e-26
TAIR|locus:2136283100 RL1 "RAD-like 1" [Arabidopsis 0.989 0.94 0.564 5.2e-26
TAIR|locus:2016417100 RL5 "RAD-like 5" [Arabidopsis 0.989 0.94 0.554 2.6e-24
TAIR|locus:211526081 RL3 "RAD-like 3" [Arabidopsis 0.831 0.975 0.621 4.2e-24
UNIPROTKB|Q58FS393 RAD "Transcription factor RADI 0.957 0.978 0.567 6.8e-24
TAIR|locus:2049374101 MEE3 "MATERNAL EFFECT EMBRYO A 0.989 0.930 0.519 6.1e-23
TAIR|locus:401071363177 RL4 "RAD-like 4" [Arabidopsis 0.778 0.961 0.618 8e-21
TAIR|locus:2154508 288 AT5G58900 [Arabidopsis thalian 0.768 0.253 0.552 1.3e-15
TAIR|locus:2074723 263 AT3G11280 [Arabidopsis thalian 0.768 0.277 0.513 2e-15
TAIR|locus:2042872 298 AT2G38090 [Arabidopsis thalian 0.684 0.218 0.575 3.7e-15
TAIR|locus:2025182 RL6 "RAD-like 6" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 298 (110.0 bits), Expect = 1.9e-26, P = 1.9e-26
 Identities = 61/98 (62%), Positives = 77/98 (78%)

Query:     1 MASGSLSST--WTPKENKLFEKALALYDKETPDRWQNIAKAVGGGKTVEEVKKHYEILVD 58
             MAS S SS   WT  +NK+FE+ALA+YDK+TPDRW N+AKAVGG KTVEEVK+HY+ILV+
Sbjct:     1 MASNSRSSISPWTFSQNKMFERALAVYDKDTPDRWHNVAKAVGG-KTVEEVKRHYDILVE 59

Query:    59 DLNRIEAGRVPIPNYKSPGSSYNAANE--ERILKNLKL 94
             DL  IE GRVP+PNYK+  S+  + N+   R +KNLK+
Sbjct:    60 DLINIETGRVPLPNYKTFESNSRSINDFDTRKMKNLKI 97
GO:0003677 "DNA binding" evidence=IEA
GO:0005634 "nucleus" evidence=ISM
GO:0009507 "chloroplast" evidence=ISM
GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS
GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS
TAIR|locus:2136283 RL1 "RAD-like 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2016417 RL5 "RAD-like 5" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2115260 RL3 "RAD-like 3" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|Q58FS3 RAD "Transcription factor RADIALIS" [Antirrhinum majus (taxid:4151)] Back     alignment and assigned GO terms
TAIR|locus:2049374 MEE3 "MATERNAL EFFECT EMBRYO ARREST 3" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:4010713631 RL4 "RAD-like 4" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2154508 AT5G58900 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2074723 AT3G11280 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2042872 AT2G38090 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q58FS3RAD_ANTMANo assigned EC number0.56250.96840.9892N/Ano
Q1A173RADL6_ARATHNo assigned EC number0.62240.97890.9587yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
GSVIVG00036374001
SubName- Full=Chromosome chr3 scaffold_8, whole genome shotgun sequence; (96 aa)
(Vitis vinifera)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query95
cd0016745 cd00167, SANT, 'SWI3, ADA2, N-CoR and TFIIIB' DNA- 3e-06
smart0071749 smart00717, SANT, SANT SWI3, ADA2, N-CoR and TFIII 6e-06
pfam0024947 pfam00249, Myb_DNA-binding, Myb-like DNA-binding d 4e-05
>gnl|CDD|238096 cd00167, SANT, 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains Back     alignment and domain information 
 Score = 40.3 bits (95), Expect = 3e-06
 Identities = 13/45 (28%), Positives = 27/45 (60%), Gaps = 4/45 (8%)

Query: 9  TWTPKENKLFEKALALYDKETPDRWQNIAKAVGGGKTVEEVKKHY 53
           WT +E++L  +A+  Y K   + W+ IAK +  G+T ++ ++ +
Sbjct: 1  PWTEEEDELLLEAVKKYGK---NNWEKIAKEL-PGRTPKQCRERW 41

Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is also found in regulatory transcriptional repressor complexes where it also binds DNA. Length = 45
>gnl|CDD|197842 smart00717, SANT, SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains Back     alignment and domain information
>gnl|CDD|215818 pfam00249, Myb_DNA-binding, Myb-like DNA-binding domain Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 95
PF0024948 Myb_DNA-binding: Myb-like DNA-binding domain; Inte 99.55
smart0071749 SANT SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-bindi 99.34
cd0016745 SANT 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding do 99.28
PF1392160 Myb_DNA-bind_6: Myb-like DNA-binding domain; PDB: 99.09
PLN03212 249 Transcription repressor MYB5; Provisional 98.96
PLN03212249 Transcription repressor MYB5; Provisional 98.8
PLN03091 459 hypothetical protein; Provisional 98.79
KOG0048 238 consensus Transcription factor, Myb superfamily [T 98.76
PLN03091 459 hypothetical protein; Provisional 98.65
TIGR0155757 myb_SHAQKYF myb-like DNA-binding domain, SHAQKYF c 98.59
KOG0048238 consensus Transcription factor, Myb superfamily [T 98.54
KOG0724 335 consensus Zuotin and related molecular chaperones 98.41
KOG0457 438 consensus Histone acetyltransferase complex SAGA/A 98.38
COG5259 531 RSC8 RSC chromatin remodeling complex subunit RSC8 98.19
KOG1279 506 consensus Chromatin remodeling factor subunit and 98.07
KOG0049 939 consensus Transcription factor, Myb superfamily [T 97.84
COG5114 432 Histone acetyltransferase complex SAGA/ADA, subuni 97.73
KOG4167 907 consensus Predicted DNA-binding protein, contains 97.61
PF1383790 Myb_DNA-bind_4: Myb/SANT-like DNA-binding domain; 97.47
PF1387378 Myb_DNA-bind_5: Myb/SANT-like DNA-binding domain 97.36
KOG0050 617 consensus mRNA splicing protein CDC5 (Myb superfam 97.07
KOG0051 607 consensus RNA polymerase I termination factor, Myb 96.54
KOG0050 617 consensus mRNA splicing protein CDC5 (Myb superfam 96.43
KOG0049 939 consensus Transcription factor, Myb superfamily [T 96.3
PF09111118 SLIDE: SLIDE; InterPro: IPR015195 The SLIDE domain 96.2
PF1277696 Myb_DNA-bind_3: Myb/SANT-like DNA-binding domain; 95.86
COG5147 512 REB1 Myb superfamily proteins, including transcrip 95.84
PLN03142 1033 Probable chromatin-remodeling complex ATPase chain 95.81
COG5118507 BDP1 Transcription initiation factor TFIIIB, Bdp1 95.24
TIGR02894161 DNA_bind_RsfA transcription factor, RsfA family. I 94.88
KOG0051607 consensus RNA polymerase I termination factor, Myb 94.73
KOG1194 534 consensus Predicted DNA-binding protein, contains 94.66
smart0059589 MADF subfamily of SANT domain. 93.95
KOG4468 782 consensus Polycomb-group transcriptional regulator 93.89
KOG4329445 consensus DNA-binding protein [General function pr 93.87
KOG3554 693 consensus Histone deacetylase complex, MTA1 compon 93.27
KOG4282 345 consensus Transcription factor GT-2 and related pr 93.19
PRK13923170 putative spore coat protein regulator protein YlbO 93.1
PF1054585 MADF_DNA_bdg: Alcohol dehydrogenase transcription 92.96
KOG2656 445 consensus DNA methyltransferase 1-associated prote 92.87
PF11035 344 SnAPC_2_like: Small nuclear RNA activating complex 92.57
COG5147 512 REB1 Myb superfamily proteins, including transcrip 92.36
PF0891465 Myb_DNA-bind_2: Rap1 Myb domain; InterPro: IPR0150 91.75
PF1340442 HTH_AsnC-type: AsnC-type helix-turn-helix domain; 90.97
PF05263130 DUF722: Protein of unknown function (DUF722); Inte 85.77
PF13325199 MCRS_N: N-terminal region of micro-spherule protei 84.34
KOG3841 455 consensus TEF-1 and related transcription factor, 82.57
PRK11179153 DNA-binding transcriptional regulator AsnC; Provis 82.13
cd0008659 homeodomain Homeodomain; DNA binding domains invol 82.0
PF0004657 Homeobox: Homeobox domain not present here.; Inter 81.37
>PF00249 Myb_DNA-binding: Myb-like DNA-binding domain; InterPro: IPR014778 The retroviral oncogene v-myb, and its cellular counterpart c-myb, encode nuclear DNA-binding proteins Back     alignment and domain information 
Probab=99.55  E-value=1.7e-14  Score=84.49  Aligned_cols=46  Identities=33%  Similarity=0.725  Sum_probs=41.9

Q ss_pred             CCCCHHHHHHHHHHHHhcCCCCChHHHHHHHHcCCCCCHHHHHHHHHHH
Q 034427            8 STWTPKENKLFEKALALYDKETPDRWQNIAKAVGGGKTVEEVKKHYEIL   56 (95)
Q Consensus         8 ~~WT~eEdklle~aL~~~~~~~~~rW~kIA~~vpggRT~~qv~~ry~~L   56 (95)
                      ..||.||+++|.+++.+|+.+   +|..||..||+|||..||+.||..+
T Consensus         2 ~~Wt~eE~~~l~~~v~~~g~~---~W~~Ia~~~~~~Rt~~qc~~~~~~~   47 (48)
T PF00249_consen    2 GPWTEEEDEKLLEAVKKYGKD---NWKKIAKRMPGGRTAKQCRSRYQNL   47 (48)
T ss_dssp             -SS-HHHHHHHHHHHHHSTTT---HHHHHHHHHSSSSTHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHhCCc---HHHHHHHHcCCCCCHHHHHHHHHhh
Confidence            579999999999999999886   8999999999889999999999986

These belong to the SANT domain family that specifically recognise the sequence YAAC(G/T)G [, ]. In myb, one of the most conserved regions consisting of three tandem repeats has been shown to be involved in DNA-binding [].; PDB: 1X41_A 2XAF_B 2XAG_B 2XAH_B 2UXN_B 2Y48_B 2XAQ_B 2X0L_B 2IW5_B 2XAJ_B ....
>smart00717 SANT SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains Back     alignment and domain information
>cd00167 SANT 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains Back     alignment and domain information
>PF13921 Myb_DNA-bind_6: Myb-like DNA-binding domain; PDB: 1A5J_A 1MBH_A 1GV5_A 1H89_C 1IDY_A 1MBK_A 1IDZ_A 1H88_C 1GVD_A 1MBG_A Back     alignment and domain information
>PLN03212 Transcription repressor MYB5; Provisional Back     alignment and domain information
>PLN03212 Transcription repressor MYB5; Provisional Back     alignment and domain information
>PLN03091 hypothetical protein; Provisional Back     alignment and domain information
>KOG0048 consensus Transcription factor, Myb superfamily [Transcription] Back     alignment and domain information
>PLN03091 hypothetical protein; Provisional Back     alignment and domain information
>TIGR01557 myb_SHAQKYF myb-like DNA-binding domain, SHAQKYF class Back     alignment and domain information
>KOG0048 consensus Transcription factor, Myb superfamily [Transcription] Back     alignment and domain information
>KOG0724 consensus Zuotin and related molecular chaperones (DnaJ superfamily), contains DNA-binding domains [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0457 consensus Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics] Back     alignment and domain information
>COG5259 RSC8 RSC chromatin remodeling complex subunit RSC8 [Chromatin structure and dynamics / Transcription] Back     alignment and domain information
>KOG1279 consensus Chromatin remodeling factor subunit and related transcription factors [Chromatin structure and dynamics] Back     alignment and domain information
>KOG0049 consensus Transcription factor, Myb superfamily [Transcription] Back     alignment and domain information
>COG5114 Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics] Back     alignment and domain information
>KOG4167 consensus Predicted DNA-binding protein, contains SANT and ELM2 domains [Transcription] Back     alignment and domain information
>PF13837 Myb_DNA-bind_4: Myb/SANT-like DNA-binding domain; PDB: 2EBI_A 2JMW_A Back     alignment and domain information
>PF13873 Myb_DNA-bind_5: Myb/SANT-like DNA-binding domain Back     alignment and domain information
>KOG0050 consensus mRNA splicing protein CDC5 (Myb superfamily) [RNA processing and modification; Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>KOG0051 consensus RNA polymerase I termination factor, Myb superfamily [Transcription] Back     alignment and domain information
>KOG0050 consensus mRNA splicing protein CDC5 (Myb superfamily) [RNA processing and modification; Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>KOG0049 consensus Transcription factor, Myb superfamily [Transcription] Back     alignment and domain information
>PF09111 SLIDE: SLIDE; InterPro: IPR015195 The SLIDE domain adopts a secondary structure comprising a main core of three alpha-helices Back     alignment and domain information
>PF12776 Myb_DNA-bind_3: Myb/SANT-like DNA-binding domain; InterPro: IPR024752 This domain, found in a range of uncharacterised proteins, may be related to Myb/SANT-like DNA binding domains Back     alignment and domain information
>COG5147 REB1 Myb superfamily proteins, including transcription factors and mRNA splicing factors [Transcription / RNA processing and modification / Cell division and chromosome partitioning] Back     alignment and domain information
>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional Back     alignment and domain information
>COG5118 BDP1 Transcription initiation factor TFIIIB, Bdp1 subunit [Transcription] Back     alignment and domain information
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family Back     alignment and domain information
>KOG0051 consensus RNA polymerase I termination factor, Myb superfamily [Transcription] Back     alignment and domain information
>KOG1194 consensus Predicted DNA-binding protein, contains Myb-like, SANT and ELM2 domains [Transcription] Back     alignment and domain information
>smart00595 MADF subfamily of SANT domain Back     alignment and domain information
>KOG4468 consensus Polycomb-group transcriptional regulator [Transcription] Back     alignment and domain information
>KOG4329 consensus DNA-binding protein [General function prediction only] Back     alignment and domain information
>KOG3554 consensus Histone deacetylase complex, MTA1 component [Chromatin structure and dynamics] Back     alignment and domain information
>KOG4282 consensus Transcription factor GT-2 and related proteins, contains trihelix DNA-binding/SANT domain [Transcription] Back     alignment and domain information
>PRK13923 putative spore coat protein regulator protein YlbO; Provisional Back     alignment and domain information
>PF10545 MADF_DNA_bdg: Alcohol dehydrogenase transcription factor Myb/SANT-like; InterPro: IPR006578 The MADF (myb/SANT-like domain in Adf-1) domain is an approximately 80-amino-acid module that directs sequence specific DNA binding to a site consisting of multiple tri-nucleotide repeats Back     alignment and domain information
>KOG2656 consensus DNA methyltransferase 1-associated protein-1 [Chromatin structure and dynamics; Transcription] Back     alignment and domain information
>PF11035 SnAPC_2_like: Small nuclear RNA activating complex subunit 2-like; InterPro: IPR021281 This family of proteins is SnAPC subunit 2-like Back     alignment and domain information
>COG5147 REB1 Myb superfamily proteins, including transcription factors and mRNA splicing factors [Transcription / RNA processing and modification / Cell division and chromosome partitioning] Back     alignment and domain information
>PF08914 Myb_DNA-bind_2: Rap1 Myb domain; InterPro: IPR015010 Rap1 Myb adopts a canonical three-helix bundle tertiary structure, with the second and third helices forming a helix-turn-helix variant motif Back     alignment and domain information
>PF13404 HTH_AsnC-type: AsnC-type helix-turn-helix domain; PDB: 2ZNY_E 2ZNZ_G 1RI7_A 2CYY_A 2E1C_A 2VC1_B 2QZ8_A 2W29_C 2IVM_B 2VBX_B Back     alignment and domain information
>PF05263 DUF722: Protein of unknown function (DUF722); InterPro: IPR007927 This entry is represented by Bacteriophage bIL285, Orf38 Back     alignment and domain information
>PF13325 MCRS_N: N-terminal region of micro-spherule protein Back     alignment and domain information
>KOG3841 consensus TEF-1 and related transcription factor, TEAD family [Transcription] Back     alignment and domain information
>PRK11179 DNA-binding transcriptional regulator AsnC; Provisional Back     alignment and domain information
>cd00086 homeodomain Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic developmental processes; may bind to DNA as monomers or as homo- and/or heterodimers, in a sequence-specific manner Back     alignment and domain information
>PF00046 Homeobox: Homeobox domain not present here Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query95
2cjj_A93 Crystal Structure Of The Myb Domain Of The Rad Tran 2e-24
4eef_G74 Crystal Structure Of The Designed Inhibitor Protein 1e-07
2m2e_A73 Solution Nmr Structure Of The Sant Domain Of Human 9e-06
>pdb|2CJJ|A Chain A, Crystal Structure Of The Myb Domain Of The Rad Transcription Factor From Antirrhinum Majus Length = 93 Back     alignment and structure 
Iteration: 1

 Score =  107 bits (266), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 54/96 (56%), Positives = 72/96 (75%), Gaps = 4/96 (4%)
Query: 1  MASGSLSST-WTPKENKLFEKALALYDKETPDRWQNIAKAVGGGKTVEEVKKHYEILVDD 59
          MAS   S   W+ KENK FE+ALA+YDK+TPDRW N+A+AV  G+T EEVKKHYEILV+D
Sbjct: 1  MASTRGSGRPWSAKENKAFERALAVYDKDTPDRWANVARAV-EGRTPEEVKKHYEILVED 59
Query: 60 LNRIEAGRVPIPNYKSPGSSYNAANEERILKNLKLQ 95
          +  IE+G+VP PNY++ G   N   +E+  +NLK++
Sbjct: 60 IKYIESGKVPFPNYRTTGG--NMKTDEKRFRNLKIR 93
>pdb|4EEF|G Chain G, Crystal Structure Of The Designed Inhibitor Protein F-Hb80.4 In Complex With The 1918 Influenza Virus Hemagglutinin. Length = 74 Back     alignment and structure
>pdb|2M2E|A Chain A, Solution Nmr Structure Of The Sant Domain Of Human Dnajc2, Northeast Structural Genomics Consortium Target Hr8254a Length = 73 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query95
2cjj_A93 Radialis; plant development, DNA-binding protein, 7e-38
4eef_G74 F-HB80.4, designed hemagglutinin binding protein; 5e-26
2cqr_A73 RSGI RUH-043, DNAJ homolog subfamily C member 1; m 6e-21
2cqq_A72 RSGI RUH-037, DNAJ homolog subfamily C member 1; m 3e-11
2elk_A58 SPCC24B10.08C protein; hypothetical protein, struc 4e-09
2yum_A75 ZZZ3 protein, zinc finger ZZ-type-containing prote 2e-07
2ltp_A89 Nuclear receptor corepressor 2; SMRT, TRAC, SGC, s 4e-07
2yus_A79 SWI/SNF-related matrix-associated actin- dependent 5e-07
2yqk_A63 Arginine-glutamic acid dipeptide repeats protein; 5e-07
2cu7_A72 KIAA1915 protein; nuclear protein, SANT domain, DN 6e-07
1x41_A60 Transcriptional adaptor 2-like, isoform B; transcr 9e-07
2crg_A70 Metastasis associated protein MTA3; transcription 2e-06
2eqr_A61 N-COR1, N-COR, nuclear receptor corepressor 1; SAN 3e-06
2iw5_B235 Protein corest, REST corepressor 1; oxidoreductase 2e-05
4a69_C94 Nuclear receptor corepressor 2; transcription, hyd 2e-05
>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3 Length = 93 Back     alignment and structure
 Score =  121 bits (304), Expect = 7e-38
 Identities = 53/96 (55%), Positives = 72/96 (75%), Gaps = 4/96 (4%)

Query: 1  MASGSLSST-WTPKENKLFEKALALYDKETPDRWQNIAKAVGGGKTVEEVKKHYEILVDD 59
          MAS   S   W+ KENK FE+ALA+YDK+TPDRW N+A+AV  G+T EEVKKHYEILV+D
Sbjct: 1  MASTRGSGRPWSAKENKAFERALAVYDKDTPDRWANVARAV-EGRTPEEVKKHYEILVED 59

Query: 60 LNRIEAGRVPIPNYKSPGSSYNAANEERILKNLKLQ 95
          +  IE+G+VP PNY++ G +     +E+  +NLK++
Sbjct: 60 IKYIESGKVPFPNYRTTGGNMK--TDEKRFRNLKIR 93
>4eef_G F-HB80.4, designed hemagglutinin binding protein; immunoglobulin, fusion of virus membrane with membrane, membrane fusion, sialic acid, virion; HET: NAG BMA; 2.70A {Artificial gene} Length = 74 Back     alignment and structure
>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3 Length = 73 Back     alignment and structure
>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3 Length = 72 Back     alignment and structure
>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe} Length = 58 Back     alignment and structure
>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 75 Back     alignment and structure
>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens} Length = 89 Back     alignment and structure
>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens} Length = 79 Back     alignment and structure
>2yqk_A Arginine-glutamic acid dipeptide repeats protein; structure genomics, SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 63 Back     alignment and structure
>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3 Length = 72 Back     alignment and structure
>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1 Length = 60 Back     alignment and structure
>2crg_A Metastasis associated protein MTA3; transcription factor, helix turn helix, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.3 Length = 70 Back     alignment and structure
>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 61 Back     alignment and structure
>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B* Length = 235 Back     alignment and structure
>4a69_C Nuclear receptor corepressor 2; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens} PDB: 1xc5_A Length = 94 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query95
2cjj_A93 Radialis; plant development, DNA-binding protein, 99.97
2cqq_A72 RSGI RUH-037, DNAJ homolog subfamily C member 1; m 99.93
4eef_G74 F-HB80.4, designed hemagglutinin binding protein; 99.83
1wgx_A73 KIAA1903 protein; MYB DNA-binding domain, human cD 99.83
2cqr_A73 RSGI RUH-043, DNAJ homolog subfamily C member 1; m 99.82
2yum_A75 ZZZ3 protein, zinc finger ZZ-type-containing prote 99.68
2yus_A79 SWI/SNF-related matrix-associated actin- dependent 99.63
2din_A66 Cell division cycle 5-like protein; MYB_DNA-bindin 99.55
1x41_A60 Transcriptional adaptor 2-like, isoform B; transcr 99.54
2elk_A58 SPCC24B10.08C protein; hypothetical protein, struc 99.54
1guu_A52 C-MYB, MYB proto-oncogene protein; transcription, 99.53
1gvd_A52 MYB proto-oncogene protein; transcription, transcr 99.49
2d9a_A60 B-MYB, MYB-related protein B; DNA binding, structu 99.49
2cu7_A72 KIAA1915 protein; nuclear protein, SANT domain, DN 99.47
2eqr_A61 N-COR1, N-COR, nuclear receptor corepressor 1; SAN 99.41
2dim_A70 Cell division cycle 5-like protein; MYB_DNA-bindin 99.4
3sjm_A64 Telomeric repeat-binding factor 2; human telomeric 99.37
1w0t_A53 Telomeric repeat binding factor 1; telomere, DNA-b 99.37
2k9n_A107 MYB24; R2R3 domain, DNA-binding, nucleus, DNA bind 99.34
1gv2_A105 C-MYB, MYB proto-oncogene protein; transcription, 99.34
2k9n_A107 MYB24; R2R3 domain, DNA-binding, nucleus, DNA bind 99.31
1ity_A69 TRF1; helix-turn-helix, telomeres, DNA binding, MY 99.3
3osg_A126 MYB21; transcription-DNA complex, MYB2, R2R3 domai 99.29
1h8a_C128 AMV V-MYB, MYB transforming protein; transcription 99.29
1gv2_A105 C-MYB, MYB proto-oncogene protein; transcription, 99.26
3osg_A126 MYB21; transcription-DNA complex, MYB2, R2R3 domai 99.24
2ltp_A89 Nuclear receptor corepressor 2; SMRT, TRAC, SGC, s 98.84
2llk_A73 Cyclin-D-binding MYB-like transcription factor 1; 99.19
3zqc_A131 MYB3; transcription-DNA complex, DNA-binding prote 99.18
1h8a_C128 AMV V-MYB, MYB transforming protein; transcription 99.16
2ckx_A83 NGTRF1, telomere binding protein TBP1; nuclear pro 99.16
1h89_C159 C-MYB, MYB proto-oncogene protein; transcription/D 99.12
2yqk_A63 Arginine-glutamic acid dipeptide repeats protein; 99.09
3zqc_A131 MYB3; transcription-DNA complex, DNA-binding prote 99.09
2crg_A70 Metastasis associated protein MTA3; transcription 99.08
1h89_C159 C-MYB, MYB proto-oncogene protein; transcription/D 99.04
2iw5_B235 Protein corest, REST corepressor 1; oxidoreductase 99.01
2aje_A105 Telomere repeat-binding protein; DNA-binding, Trp, 98.96
2roh_A122 RTBP1, telomere binding protein-1; plant, nucleus, 98.95
2juh_A121 Telomere binding protein TBP1; helix, nucleus, nuc 98.9
4a69_C94 Nuclear receptor corepressor 2; transcription, hyd 98.88
1x58_A62 Hypothetical protein 4930532D21RIK; MUS musculus a 98.76
1ign_A 246 Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, 98.71
2xag_B482 REST corepressor 1; amine oxidase, chromatin regul 98.59
3hm5_A93 DNA methyltransferase 1-associated protein 1; DNA 98.48
1ofc_X304 ISWI protein; nuclear protein, chromatin remodelin 98.38
1ug2_A95 2610100B20RIK gene product; hypothetical protein, 98.36
1fex_A59 TRF2-interacting telomeric RAP1 protein; helix tur 98.06
2lr8_A70 CAsp8-associated protein 2; structural genomics, n 97.21
4iej_A93 DNA methyltransferase 1-associated protein 1; DNA 97.71
2xag_B 482 REST corepressor 1; amine oxidase, chromatin regul 97.59
2ebi_A86 DNA binding protein GT-1; DNA-binding domain, phos 97.49
1irz_A64 ARR10-B; helix-turn-helix, DNA binding protein; NM 97.3
4b4c_A 211 Chromodomain-helicase-DNA-binding protein 1; chrom 97.13
1ofc_X304 ISWI protein; nuclear protein, chromatin remodelin 96.55
1ign_A246 Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, 96.32
2y9y_A 374 Imitation switch protein 1 (DEL_ATPase); transcrip 95.83
2y9y_A374 Imitation switch protein 1 (DEL_ATPase); transcrip 94.33
4b4c_A211 Chromodomain-helicase-DNA-binding protein 1; chrom 93.34
2xb0_X 270 Chromo domain-containing protein 1; hydrolase, DNA 90.99
2ecc_A76 Homeobox and leucine zipper protein homez; homeobo 87.49
2da6_A102 Hepatocyte nuclear factor 1-beta; homeobox domain, 85.27
2xb0_X270 Chromo domain-containing protein 1; hydrolase, DNA 84.27
>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3 Back     alignment and structure
Probab=99.97  E-value=3.4e-32  Score=180.93  Aligned_cols=92  Identities=58%  Similarity=1.009  Sum_probs=61.8

Q ss_pred             CCC-CCCCCCCCHHHHHHHHHHHHhcCCCCChHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCC
Q 034427            1 MAS-GSLSSTWTPKENKLFEKALALYDKETPDRWQNIAKAVGGGKTVEEVKKHYEILVDDLNRIEAGRVPIPNYKSPGSS   79 (95)
Q Consensus         1 ~~~-~~~~~~WT~eEdklle~aL~~~~~~~~~rW~kIA~~vpggRT~~qv~~ry~~L~~dV~~iesg~v~~P~y~~~~~~   79 (95)
                      |.| +++...||.|||++|++||++|+.++++||++||++|| |||++||++||+.|++||..||+|.+|+|+|.++|  
T Consensus         1 ~~~~~~~~~~WT~eEd~~L~~al~~~~~~~~~rW~~IA~~vp-GRT~~q~k~ry~~l~~dv~~iesg~vp~P~y~~~~--   77 (93)
T 2cjj_A            1 MASTRGSGRPWSAKENKAFERALAVYDKDTPDRWANVARAVE-GRTPEEVKKHYEILVEDIKYIESGKVPFPNYRTTG--   77 (93)
T ss_dssp             -------CCSCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHST-TCCHHHHHHHHHHHHHHHHHHHHSSCCC---------
T ss_pred             CCCCCCCCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcC-CCCHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCC--
Confidence            444 45677999999999999999999999999999999999 89999999999999999999999999999998765  


Q ss_pred             CccchHHHHHhhccCC
Q 034427           80 YNAANEERILKNLKLQ   95 (95)
Q Consensus        80 ~~~~~~~~~~~~~~~~   95 (95)
                      .+-.+++.|+++|+||
T Consensus        78 ~~~~~~~~~~~~~~~~   93 (93)
T 2cjj_A           78 GNMKTDEKRFRNLKIR   93 (93)
T ss_dssp             ----------------
T ss_pred             CCcccHHHHHhcccCC
Confidence            3333788999999997
>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3 Back     alignment and structure
>4eef_G F-HB80.4, designed hemagglutinin binding protein; immunoglobulin, fusion of virus membrane with membrane, membrane fusion, sialic acid, virion; HET: NAG BMA; 2.70A {Artificial gene} Back     alignment and structure
>1wgx_A KIAA1903 protein; MYB DNA-binding domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.4.1.3 Back     alignment and structure
>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3 Back     alignment and structure
>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens} Back     alignment and structure
>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1 Back     alignment and structure
>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe} Back     alignment and structure
>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A Back     alignment and structure
>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A Back     alignment and structure
>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus} Back     alignment and structure
>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3 Back     alignment and structure
>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>3sjm_A Telomeric repeat-binding factor 2; human telomeric repeat binding protein 2, telomere, telomeri homeodomain proteins amino acid sequence; HET: DNA; 1.35A {Homo sapiens} PDB: 1xg1_A 1vfc_A 1vf9_A 1w0u_A Back     alignment and structure
>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A Back     alignment and structure
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A Back     alignment and structure
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A Back     alignment and structure
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A Back     alignment and structure
>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A Back     alignment and structure
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A Back     alignment and structure
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3 Back     alignment and structure
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A Back     alignment and structure
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A Back     alignment and structure
>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens} Back     alignment and structure
>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens} Back     alignment and structure
>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis} Back     alignment and structure
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3 Back     alignment and structure
>2ckx_A NGTRF1, telomere binding protein TBP1; nuclear protein; 1.9A {Nicotiana tabacum} SCOP: a.4.1.3 PDB: 2qhb_A Back     alignment and structure
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C Back     alignment and structure
>2yqk_A Arginine-glutamic acid dipeptide repeats protein; structure genomics, SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis} Back     alignment and structure
>2crg_A Metastasis associated protein MTA3; transcription factor, helix turn helix, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.3 Back     alignment and structure
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C Back     alignment and structure
>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B* Back     alignment and structure
>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3 Back     alignment and structure
>2roh_A RTBP1, telomere binding protein-1; plant, nucleus, DNA binding protein; NMR {Oryza sativa} Back     alignment and structure
>2juh_A Telomere binding protein TBP1; helix, nucleus, nuclear protein; NMR {Nicotiana glutinosa} Back     alignment and structure
>4a69_C Nuclear receptor corepressor 2; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens} PDB: 1xc5_A Back     alignment and structure
>1x58_A Hypothetical protein 4930532D21RIK; MUS musculus adult MALE testis cDNA, riken FULL-length enriched library, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1 Back     alignment and structure
>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A Back     alignment and structure
>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B* Back     alignment and structure
>3hm5_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin, structural genomics consortium, SGC, activator, chromatin regulator; HET: DNA; 1.80A {Homo sapiens} Back     alignment and structure
>1ofc_X ISWI protein; nuclear protein, chromatin remodeling factor, ATPase, SANT domain, nucleosome recognition; HET: GLC G4D; 1.9A {Drosophila melanogaster} SCOP: a.4.1.3 a.4.1.13 a.187.1.1 PDB: 2nog_A Back     alignment and structure
>1ug2_A 2610100B20RIK gene product; hypothetical protein, MYB-like DNA binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.4.1.3 Back     alignment and structure
>1fex_A TRF2-interacting telomeric RAP1 protein; helix turn helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Synthetic} SCOP: a.4.1.3 Back     alignment and structure
>2lr8_A CAsp8-associated protein 2; structural genomics, northeast structural genomics consortiu PSI-biology, apoptosis; NMR {Homo sapiens} Back     alignment and structure
>4iej_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin regulator, repressor, structural joint center for structural genomics; HET: DNA; 1.45A {Homo sapiens} PDB: 3hm5_A* Back     alignment and structure
>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B* Back     alignment and structure
>2ebi_A DNA binding protein GT-1; DNA-binding domain, phosphorylation; HET: DNA; NMR {Arabidopsis thaliana} PDB: 2jmw_A* Back     alignment and structure
>1irz_A ARR10-B; helix-turn-helix, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.11 Back     alignment and structure
>4b4c_A Chromodomain-helicase-DNA-binding protein 1; chromatin-remodeling, histone acetylation COMP chromatin regulation, transcription; 1.62A {Homo sapiens} Back     alignment and structure
>1ofc_X ISWI protein; nuclear protein, chromatin remodeling factor, ATPase, SANT domain, nucleosome recognition; HET: GLC G4D; 1.9A {Drosophila melanogaster} SCOP: a.4.1.3 a.4.1.13 a.187.1.1 PDB: 2nog_A Back     alignment and structure
>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A Back     alignment and structure
>2y9y_A Imitation switch protein 1 (DEL_ATPase); transcription, nuclear protein complex, chromatin remodeling nucleosome remodeling; 3.25A {Saccharomyces cerevisiae} PDB: 2y9z_A Back     alignment and structure
>2y9y_A Imitation switch protein 1 (DEL_ATPase); transcription, nuclear protein complex, chromatin remodeling nucleosome remodeling; 3.25A {Saccharomyces cerevisiae} PDB: 2y9z_A Back     alignment and structure
>4b4c_A Chromodomain-helicase-DNA-binding protein 1; chromatin-remodeling, histone acetylation COMP chromatin regulation, transcription; 1.62A {Homo sapiens} Back     alignment and structure
>2xb0_X Chromo domain-containing protein 1; hydrolase, DNA-binding protein, transcription, chromatin REG; HET: GOL; 2.00A {Saccharomyces cerevisiae} PDB: 3ted_A Back     alignment and structure
>2ecc_A Homeobox and leucine zipper protein homez; homeobox domain, transcription factor, leucine zipper- containing factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1 Back     alignment and structure
>2da6_A Hepatocyte nuclear factor 1-beta; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2xb0_X Chromo domain-containing protein 1; hydrolase, DNA-binding protein, transcription, chromatin REG; HET: GOL; 2.00A {Saccharomyces cerevisiae} PDB: 3ted_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 95
d2cqqa159 a.4.1.3 (A:8-66) DnaJ homolog subfamily C member 1 7e-20
d2cjja163 a.4.1.3 (A:8-70) Radialis {Garden snapdragon (Anti 1e-18
d2cqra160 a.4.1.3 (A:7-66) DnaJ homolog subfamily C member 1 5e-08
d2crga157 a.4.1.3 (A:8-64) Metastasis associated protein MTA 9e-08
>d2cqqa1 a.4.1.3 (A:8-66) DnaJ homolog subfamily C member 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 59 Back     information, alignment and structure

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: DnaJ homolog subfamily C member 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 73.7 bits (181), Expect = 7e-20
 Identities = 15/62 (24%), Positives = 29/62 (46%), Gaps = 3/62 (4%)

Query: 7  SSTWTPKENKLFEKALALYDKETPDRWQNIAKAVGGGKTVEEVKKHYEILVDDLNRIEAG 66
          +  WT ++     +++  +   TP RW+ IA  +  G++V +V    + L D +     G
Sbjct: 1  APEWTEEDLSQLTRSMVKFPGGTPGRWEKIAHEL--GRSVTDVTTKAKQLKDSV-TCSPG 57

Query: 67 RV 68
           V
Sbjct: 58 MV 59
>d2cjja1 a.4.1.3 (A:8-70) Radialis {Garden snapdragon (Antirrhinum majus) [TaxId: 4151]} Length = 63 Back     information, alignment and structure
>d2cqra1 a.4.1.3 (A:7-66) DnaJ homolog subfamily C member 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 60 Back     information, alignment and structure
>d2crga1 a.4.1.3 (A:8-64) Metastasis associated protein MTA3 {Mouse (Mus musculus) [TaxId: 10090]} Length = 57 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query95
d2cjja163 Radialis {Garden snapdragon (Antirrhinum majus) [T 99.92
d2cqqa159 DnaJ homolog subfamily C member 1 {Human (Homo sap 99.83
d2cqra160 DnaJ homolog subfamily C member 1 {Human (Homo sap 99.75
d1x41a147 Transcriptional adaptor 2-like, TADA2L, isoform b 99.55
d1guua_50 c-Myb, DNA-binding domain {Mouse (Mus musculus) [T 99.49
d1gvda_52 c-Myb, DNA-binding domain {Mouse (Mus musculus) [T 99.48
d2cu7a165 MYSM1 (KIAA1915) {Human (Homo sapiens) [TaxId: 960 99.47
d1gv2a247 c-Myb, DNA-binding domain {Mouse (Mus musculus) [T 99.46
d2iw5b165 REST corepressor 1, CoREST {Human (Homo sapiens) [ 99.39
d1w0ua_55 Telomeric repeat binding factor 2, TRF2 {Human (Ho 99.34
d1w0ta_52 DNA-binding domain of human telomeric protein, hTR 99.34
d1igna186 DNA-binding domain of rap1 {Baker's yeast (Sacchar 99.31
d1xc5a168 Nuclear receptor corepressor 2 {Human (Homo sapien 99.25
d2ckxa183 Telomere binding protein TBP1 {Tobacco (Nicotiana 99.17
d1ug2a_95 2610100b20rik gene product {Mouse (Mus musculus) [ 99.06
d2crga157 Metastasis associated protein MTA3 {Mouse (Mus mus 99.02
d1wgxa_73 Hypothetical protein C14orf106 (KIAA1903) {Human ( 98.79
d1irza_64 Arr10-B {Thale cress (Arabidopsis thaliana) [TaxId 98.1
d1ofcx152 SANT domain of the nucleosome remodeling ATPase IS 97.91
d1fexa_59 Rap1 {Human (Homo sapiens) [TaxId: 9606]} 95.39
d2ecca176 Homeobox-leucine zipper protein Homez {Human (Homo 95.36
d1ofcx2128 SLIDE domain of the nucleosome remodeling ATPase I 93.55
d1x58a149 Hypothetical protein 4930532d21rik {Mouse (Mus mus 91.58
d1lvaa364 C-terminal fragment of elongation factor SelB {Moo 87.91
d1fs1b155 Cyclin A/CDK2-associated p45, Skp1 {Human (Homo sa 86.62
d2cg4a163 Regulatory protein AsnC {Escherichia coli [TaxId: 85.31
d1ig7a_58 Msx-1 homeodomain {Mouse (Mus musculus) [TaxId: 10 84.27
d2cyya160 Putative transcriptional regulator PH1519 {Archaeo 83.58
d2cfxa163 Transcriptional regulator LrpC {Bacillus subtilis 83.48
d1au7a158 Pit-1 POU homeodomain {Rat (Rattus norvegicus) [Ta 83.15
d1i1ga160 LprA {Archaeon Pyrococcus furiosus [TaxId: 2261]} 80.1
>d2cjja1 a.4.1.3 (A:8-70) Radialis {Garden snapdragon (Antirrhinum majus) [TaxId: 4151]} Back     information, alignment and structure
class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Radialis
species: Garden snapdragon (Antirrhinum majus) [TaxId: 4151]

Probab=99.92  E-value=2.1e-25  Score=136.33  Aligned_cols=62  Identities=66%  Similarity=1.162  Sum_probs=60.4

Q ss_pred             CCCCHHHHHHHHHHHHhcCCCCChHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHhcCCCCC
Q 034427            8 STWTPKENKLFEKALALYDKETPDRWQNIAKAVGGGKTVEEVKKHYEILVDDLNRIEAGRVPI   70 (95)
Q Consensus         8 ~~WT~eEdklle~aL~~~~~~~~~rW~kIA~~vpggRT~~qv~~ry~~L~~dV~~iesg~v~~   70 (95)
                      ++||.|||++|+.||.+|+.+.+++|.+||.+|| |||.+||++||+.|.+||+.||+|+|||
T Consensus         2 ~~WT~eEd~~L~~~v~~~~~~~~~~W~~Ia~~l~-gRt~~qc~~r~~~L~~dik~iesg~vpf   63 (63)
T d2cjja1           2 RPWSAKENKAFERALAVYDKDTPDRWANVARAVE-GRTPEEVKKHYEILVEDIKYIESGKVPF   63 (63)
T ss_dssp             CSCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHST-TCCHHHHHHHHHHHHHHHHHHHHSSCCC
T ss_pred             cCCCHHHHHHHHHHHHHHCCCCchHHHHHHHHcC-CCCHHHHHHHHHHHHHHhhccccCCCCC
Confidence            6799999999999999999999999999999999 9999999999999999999999999997
>d2cqqa1 a.4.1.3 (A:8-66) DnaJ homolog subfamily C member 1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2cqra1 a.4.1.3 (A:7-66) DnaJ homolog subfamily C member 1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1x41a1 a.4.1.1 (A:8-54) Transcriptional adaptor 2-like, TADA2L, isoform b {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1guua_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1gvda_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d2cu7a1 a.4.1.3 (A:8-72) MYSM1 (KIAA1915) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1gv2a2 a.4.1.3 (A:144-190) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d2iw5b1 a.4.1.3 (B:376-440) REST corepressor 1, CoREST {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1w0ua_ a.4.1.4 (A:) Telomeric repeat binding factor 2, TRF2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1w0ta_ a.4.1.4 (A:) DNA-binding domain of human telomeric protein, hTRF1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1igna1 a.4.1.6 (A:360-445) DNA-binding domain of rap1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1xc5a1 a.4.1.3 (A:413-480) Nuclear receptor corepressor 2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2ckxa1 a.4.1.3 (A:578-660) Telomere binding protein TBP1 {Tobacco (Nicotiana tabacum) [TaxId: 4097]} Back     information, alignment and structure
>d1ug2a_ a.4.1.3 (A:) 2610100b20rik gene product {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d2crga1 a.4.1.3 (A:8-64) Metastasis associated protein MTA3 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1wgxa_ a.4.1.3 (A:) Hypothetical protein C14orf106 (KIAA1903) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1irza_ a.4.1.11 (A:) Arr10-B {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d1ofcx1 a.4.1.3 (X:799-850) SANT domain of the nucleosome remodeling ATPase ISWI {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Back     information, alignment and structure
>d1fexa_ a.4.1.3 (A:) Rap1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2ecca1 a.4.1.1 (A:1-76) Homeobox-leucine zipper protein Homez {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ofcx2 a.4.1.13 (X:851-978) SLIDE domain of the nucleosome remodeling ATPase ISWI {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Back     information, alignment and structure
>d1x58a1 a.4.1.1 (A:8-56) Hypothetical protein 4930532d21rik {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1lvaa3 a.4.5.35 (A:511-574) C-terminal fragment of elongation factor SelB {Moorella thermoacetica [TaxId: 1525]} Back     information, alignment and structure
>d1fs1b1 a.157.1.1 (B:86-140) Cyclin A/CDK2-associated p45, Skp1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2cg4a1 a.4.5.32 (A:4-66) Regulatory protein AsnC {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1ig7a_ a.4.1.1 (A:) Msx-1 homeodomain {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d2cyya1 a.4.5.32 (A:5-64) Putative transcriptional regulator PH1519 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Back     information, alignment and structure
>d2cfxa1 a.4.5.32 (A:1-63) Transcriptional regulator LrpC {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d1au7a1 a.4.1.1 (A:103-160) Pit-1 POU homeodomain {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1i1ga1 a.4.5.32 (A:2-61) LprA {Archaeon Pyrococcus furiosus [TaxId: 2261]} Back     information, alignment and structure