Citrus Sinensis ID: 034429

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-----
Protein Sequence
METSAASGGPGGLGGGPAPFLIKTYDMVDDSSTDEIVSWSDNKNSFVVWNPPEFARLLLPTYFKHNNFSSFIRQLNTYVQIIINKSFLWNHDNAV
Secondary Structure (PSIPRED)
ccccccccccccccccccHHHHHHHHHHccccccccEEEccccccEEEcccHHHHHHHccccccccccHHHHHHHHccccEEccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccccccccccccccHHHHHHHHHccHHHccccEEccccccEEEccHHHHHHHcHHHHcccccHHHHHHHHHHcEEEcccccccccccccc
Coil and Loop (DISEMBL)
metsaasggpgglgggpapfliktydmvddsstdeivswsdnknsfvvwnppefarlllptyfkhnnfssFIRQLNTYVQIIINKSflwnhdnav
Flexible Loop (DISEMBL)
metsaasggpgglgggPAPFLIKTYDMVDDSSTDEIVSWSDNKNSFVVWNPPEFARLLLPTYFKHNNFSSFIRQLNTYVQIIINKsflwnhdnav
Low Complexity Region (SEG)
METsaasggpgglgggpapFLIKTYDMVDDSSTDEIVSWSDNKNSFVVWNPPEFARLLLPTYFKHNNFSSFIRQLNTYVQIIINKSFLWNHDNAV
Disordered region (IsUnstruct)
******************PFLIKTYDMVDDSSTDEIVSWSDNKNSFVVWNPPEFARLLLPTYFKHNNFSSFIRQLNTYVQIIINKSFLWNH****
Disordered Region (DISOPRED)
********************LIKTYDMVDDSSTDEIVSWSDNKNSFVVWNPPEFARLLLPTYFKHNNFSSFIRQLNTYVQIIINKSFL*******
Disordered Region (DISEMBL)
***********GLGGGPAPFLIKTYDMVDDSSTDEIVSWSDNKNSFVVWNPPEFARLLLPTYFKHNNFSSFIRQLNTYVQIIINKSFLWNHDNAV
Disordered Region (DISPRO)
**************GGPAPFLIKTYDMVDDSSTDEIVSWSDNKNSFVVWNPPEFARLLLPTYFKHNNFSSFIRQLNTYVQIIINKSFLWN*****
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
METSAASGGPGGLGGGPAPFLIKTYDMVDDSSTDEIVSWSDNKNSFVVWNPPEFARLLLPTYFKHNNFSSFIRQLNTYVQIIINKSFLWNHDNAV
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	95	2.2.26 [Sep-21-2011]
Q94BZ5	466	Heat stress transcription	yes	no	0.621	0.126	0.847	1e-24
Q7XHZ0	310	Heat stress transcription	yes	no	0.652	0.2	0.741	5e-24
Q40152	527	Heat shock factor protein	N/A	no	0.621	0.111	0.813	9e-24
Q9LQM7	485	Heat stress transcription	no	no	0.663	0.129	0.777	1e-23
P41153	527	Heat shock factor protein	N/A	no	0.621	0.111	0.813	1e-23
Q84T61	506	Heat stress transcription	no	no	0.705	0.132	0.701	3e-23
P41151	495	Heat stress transcription	no	no	0.652	0.125	0.758	4e-23
Q9C635	348	Heat stress transcription	no	no	0.715	0.195	0.691	4e-23
Q6K6S5	475	Heat stress transcription	no	no	0.652	0.130	0.777	5e-23
Q6F388	357	Heat stress transcription	no	no	0.8	0.212	0.641	5e-23

>sp|Q94BZ5|HSFA5_ARATH Heat stress transcription factor A-5 OS=Arabidopsis thaliana GN=HSFA5 PE=2 SV=1

 Score =  112 bits (279), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 50/59 (84%), Positives = 55/59 (93%)

Query: 20 FLIKTYDMVDDSSTDEIVSWSDNKNSFVVWNPPEFARLLLPTYFKHNNFSSFIRQLNTY 78
          FL+KTY+MVDDSSTD+IVSWS N NSF+VWN  EF+RLLLPTYFKHNNFSSFIRQLNTY
Sbjct: 24 FLVKTYEMVDDSSTDQIVSWSANNNSFIVWNHAEFSRLLLPTYFKHNNFSSFIRQLNTY 82

Transcriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Arabidopsis thaliana (taxid: 3702)

>sp|Q7XHZ0|HFB4B_ORYSJ Heat stress transcription factor B-4b OS=Oryza sativa subsp. japonica GN=HSFB4B PE=2 SV=1

 Score =  109 bits (273), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 46/62 (74%), Positives = 51/62 (82%)

Query: 17 PAPFLIKTYDMVDDSSTDEIVSWSDNKNSFVVWNPPEFARLLLPTYFKHNNFSSFIRQLN 76
          PAPFL KTY +VDD  TD IVSW ++  +FVVW PPEFAR LLP YFKHNNFSSF+RQLN
Sbjct: 32 PAPFLTKTYQLVDDPCTDHIVSWGEDDTTFVVWRPPEFARDLLPNYFKHNNFSSFVRQLN 91

Query: 77 TY 78
          TY
Sbjct: 92 TY 93

Transcriptional activator that specifically binds DNA of heat shock promoter elements (HSE).

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q40152|HSF8_SOLLC Heat shock factor protein HSF8 OS=Solanum lycopersicum GN=HSF8 PE=3 SV=1

 Score =  108 bits (270), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 48/59 (81%), Positives = 53/59 (89%)

Query: 20 FLIKTYDMVDDSSTDEIVSWSDNKNSFVVWNPPEFARLLLPTYFKHNNFSSFIRQLNTY 78
          FL+KTYDMVDD STD+IVSWS   NSFVVW+PPEFA+ LLP YFKHNNFSSF+RQLNTY
Sbjct: 40 FLVKTYDMVDDPSTDKIVSWSPTNNSFVVWDPPEFAKDLLPKYFKHNNFSSFVRQLNTY 98

DNA-binding protein that specifically binds heat shock promoter elements (HSE) and activates transcription.

Solanum lycopersicum (taxid: 4081)

>sp|Q9LQM7|HFA1D_ARATH Heat stress transcription factor A-1d OS=Arabidopsis thaliana GN=HSFA1D PE=2 SV=2

 Score =  108 bits (270), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 49/63 (77%), Positives = 52/63 (82%)

Query: 16 GPAPFLIKTYDMVDDSSTDEIVSWSDNKNSFVVWNPPEFARLLLPTYFKHNNFSSFIRQL 75
           P PFL KTYDMVDD +TD IVSWS N NSF+VW PPEFAR LLP  FKHNNFSSF+RQL
Sbjct: 34 APPPFLSKTYDMVDDHNTDSIVSWSANNNSFIVWKPPEFARDLLPKNFKHNNFSSFVRQL 93

Query: 76 NTY 78
          NTY
Sbjct: 94 NTY 96

Transcriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).

Arabidopsis thaliana (taxid: 3702)

>sp|P41153|HSF8_SOLPE Heat shock factor protein HSF8 OS=Solanum peruvianum GN=HSF8 PE=2 SV=1

 Score =  108 bits (270), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 48/59 (81%), Positives = 53/59 (89%)

Query: 20  FLIKTYDMVDDSSTDEIVSWSDNKNSFVVWNPPEFARLLLPTYFKHNNFSSFIRQLNTY 78
           FL+KTYDMVDD STD+IVSWS   NSFVVW+PPEFA+ LLP YFKHNNFSSF+RQLNTY
Sbjct: 42  FLVKTYDMVDDPSTDKIVSWSPTNNSFVVWDPPEFAKDLLPKYFKHNNFSSFVRQLNTY 100

DNA-binding protein that specifically binds heat shock promoter elements (HSE) and activates transcription.

Solanum peruvianum (taxid: 4082)

>sp|Q84T61|HSFA1_ORYSJ Heat stress transcription factor A-1 OS=Oryza sativa subsp. japonica GN=HSFA1 PE=2 SV=1

 Score =  106 bits (265), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 47/67 (70%), Positives = 54/67 (80%)

Query: 12 GLGGGPAPFLIKTYDMVDDSSTDEIVSWSDNKNSFVVWNPPEFARLLLPTYFKHNNFSSF 71
          G+   P PFL+KTY+MVDD +TD +VSW    NSFVVWN PEFAR LLP YFKH+NFSSF
Sbjct: 30 GVATAPPPFLMKTYEMVDDPATDAVVSWGPGNNSFVVWNTPEFARDLLPKYFKHSNFSSF 89

Query: 72 IRQLNTY 78
          +RQLNTY
Sbjct: 90 VRQLNTY 96

Transcriptional regulator that specifically binds DNA of heat shock promoter elements (HSE).

Oryza sativa subsp. japonica (taxid: 39947)

>sp|P41151|HFA1A_ARATH Heat stress transcription factor A-1a OS=Arabidopsis thaliana GN=HSFA1A PE=1 SV=2

 Score =  106 bits (265), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 47/62 (75%), Positives = 53/62 (85%)

Query: 17  PAPFLIKTYDMVDDSSTDEIVSWSDNKNSFVVWNPPEFARLLLPTYFKHNNFSSFIRQLN 76
           P PFL KTYDMV+D +TD IVSWS   NSF+VW+PPEF+R LLP YFKHNNFSSF+RQLN
Sbjct: 50  PPPFLSKTYDMVEDPATDAIVSWSPTNNSFIVWDPPEFSRDLLPKYFKHNNFSSFVRQLN 109

Query: 77  TY 78
           TY
Sbjct: 110 TY 111

Transcriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).

Arabidopsis thaliana (taxid: 3702)

>sp|Q9C635|HSFB4_ARATH Heat stress transcription factor B-4 OS=Arabidopsis thaliana GN=HSFB4 PE=2 SV=1

 Score =  106 bits (264), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 47/68 (69%), Positives = 53/68 (77%)

Query: 11 GGLGGGPAPFLIKTYDMVDDSSTDEIVSWSDNKNSFVVWNPPEFARLLLPTYFKHNNFSS 70
          G     PAPFL KTY +VDD +TD +VSW D+  +FVVW PPEFAR LLP YFKHNNFSS
Sbjct: 26 GQGKAVPAPFLTKTYQLVDDPATDHVVSWGDDDTTFVVWRPPEFARDLLPNYFKHNNFSS 85

Query: 71 FIRQLNTY 78
          F+RQLNTY
Sbjct: 86 FVRQLNTY 93

Transcriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).

Arabidopsis thaliana (taxid: 3702)

>sp|Q6K6S5|HSFA5_ORYSJ Heat stress transcription factor A-5 OS=Oryza sativa subsp. japonica GN=HSFA5 PE=2 SV=1

 Score =  106 bits (264), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 49/63 (77%), Positives = 54/63 (85%), Gaps = 1/63 (1%)

Query: 17 PAPFLIKTYDMVDDSSTDEIVSWSDNKN-SFVVWNPPEFARLLLPTYFKHNNFSSFIRQL 75
          PAPFL+KTY+MVDD STD +VSWSD  + SFVVWN PEFA  LLP YFKH+NFSSFIRQL
Sbjct: 19 PAPFLLKTYEMVDDPSTDAVVSWSDASDASFVVWNHPEFAARLLPAYFKHSNFSSFIRQL 78

Query: 76 NTY 78
          NTY
Sbjct: 79 NTY 81

Transcriptional regulator that specifically binds DNA of heat shock promoter elements (HSE).

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q6F388|HFA2E_ORYSJ Heat stress transcription factor A-2e OS=Oryza sativa subsp. japonica GN=HSFA2E PE=2 SV=1

 Score =  106 bits (264), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 52/81 (64%), Positives = 58/81 (71%), Gaps = 5/81 (6%)

Query: 3  TSAASGGP-----GGLGGGPAPFLIKTYDMVDDSSTDEIVSWSDNKNSFVVWNPPEFARL 57
          T  A+G P     G   GGP PFL KTYDMVDD +TD +VSWS   NSFVVW+P  F  +
Sbjct: 17 TGVANGQPPRPMDGLADGGPPPFLTKTYDMVDDPTTDAVVSWSATNNSFVVWDPHLFGNV 76

Query: 58 LLPTYFKHNNFSSFIRQLNTY 78
          LLP YFKHNNFSSF+RQLNTY
Sbjct: 77 LLPRYFKHNNFSSFVRQLNTY 97

Transcriptional activator expressed upon environmental stress that specifically binds DNA of heat shock promoter elements (HSE). Involved in heat stress response.

Oryza sativa subsp. japonica (taxid: 39947)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	95
224129188	485	predicted protein [Populus trichocarpa]	0.778	0.152	0.878	7e-32
356512441	479	PREDICTED: heat stress transcription fac	0.747	0.148	0.833	8e-29
356525203	477	PREDICTED: heat stress transcription fac	0.736	0.146	0.816	7e-28
359477939	488	PREDICTED: heat stress transcription fac	0.631	0.122	0.883	2e-25
357444513	329	Heat stress transcription factor A-5 [Me	0.789	0.227	0.706	2e-25
255563602	491	DNA binding protein, putative [Ricinus c	0.621	0.120	0.898	3e-25
357454759	444	Heat stress transcription factor A-5 [Me	0.768	0.164	0.739	3e-25
298205240	3442	unnamed protein product [Vitis vinifera]	0.642	0.017	0.868	4e-25
357454757	419	Heat stress transcription factor A-5 [Me	0.673	0.152	0.828	5e-25
449433171	467	PREDICTED: heat stress transcription fac	0.621	0.126	0.898	6e-25

>gi|224129188|ref|XP_002328912.1| predicted protein [Populus trichocarpa] gi|222839342|gb|EEE77679.1| predicted protein [Populus trichocarpa]

 Score =  140 bits (354), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 65/74 (87%), Positives = 66/74 (89%)

Query: 5  AASGGPGGLGGGPAPFLIKTYDMVDDSSTDEIVSWSDNKNSFVVWNPPEFARLLLPTYFK 64
          A S      GGGPAPFLIKTYDMVDDSSTDEIVSWS NKNSFVVWNPPEFARLLLPT+FK
Sbjct: 3  AGSSPSAAAGGGPAPFLIKTYDMVDDSSTDEIVSWSSNKNSFVVWNPPEFARLLLPTFFK 62

Query: 65 HNNFSSFIRQLNTY 78
          HNNFSSFIRQLNTY
Sbjct: 63 HNNFSSFIRQLNTY 76

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356512441|ref|XP_003524927.1| PREDICTED: heat stress transcription factor A-5-like [Glycine max]

 Score =  130 bits (328), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 60/72 (83%), Positives = 64/72 (88%), Gaps = 1/72 (1%)

Query: 8  GGPGGLG-GGPAPFLIKTYDMVDDSSTDEIVSWSDNKNSFVVWNPPEFARLLLPTYFKHN 66
          G P   G GGPAPFL+KTYDMVDD+ST++IVSWS   NSFVVWNPPEFARLLLPTYFKHN
Sbjct: 3  GAPQSAGAGGPAPFLLKTYDMVDDASTNDIVSWSSTNNSFVVWNPPEFARLLLPTYFKHN 62

Query: 67 NFSSFIRQLNTY 78
          NFSSFIRQLNTY
Sbjct: 63 NFSSFIRQLNTY 74

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356525203|ref|XP_003531216.1| PREDICTED: heat stress transcription factor A-5-like [Glycine max]

 Score =  127 bits (320), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 58/71 (81%), Positives = 63/71 (88%), Gaps = 1/71 (1%)

Query: 8  GGPGGLGGGPAPFLIKTYDMVDDSSTDEIVSWSDNKNSFVVWNPPEFARLLLPTYFKHNN 67
          G P    GGPAPFL+KTY+MVDD+ST++IVSWS   NSFVVWNPPEFARLLLPTYFKHNN
Sbjct: 3  GAPQS-AGGPAPFLLKTYEMVDDASTNDIVSWSSTNNSFVVWNPPEFARLLLPTYFKHNN 61

Query: 68 FSSFIRQLNTY 78
          FSSFIRQLNTY
Sbjct: 62 FSSFIRQLNTY 72

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359477939|ref|XP_002265319.2| PREDICTED: heat stress transcription factor A-5-like [Vitis vinifera]

 Score =  119 bits (299), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 53/60 (88%), Positives = 57/60 (95%)

Query: 19 PFLIKTYDMVDDSSTDEIVSWSDNKNSFVVWNPPEFARLLLPTYFKHNNFSSFIRQLNTY 78
          PFL+KTY+MVDDSSTDEIVSWS  K+SFVVWNPPEFAR+LLP YFKHNNFSSFIRQLNTY
Sbjct: 20 PFLLKTYEMVDDSSTDEIVSWSSTKSSFVVWNPPEFARVLLPMYFKHNNFSSFIRQLNTY 79

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357444513|ref|XP_003592534.1| Heat stress transcription factor A-5 [Medicago truncatula] gi|355481582|gb|AES62785.1| Heat stress transcription factor A-5 [Medicago truncatula]

 Score =  119 bits (298), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 53/75 (70%), Positives = 61/75 (81%)

Query: 4  SAASGGPGGLGGGPAPFLIKTYDMVDDSSTDEIVSWSDNKNSFVVWNPPEFARLLLPTYF 63
          S+     G  GG  APF+ KTYDMVDD +TDEIVSWS +  SF+VWNPPEF+R+LLP+YF
Sbjct: 7  SSLVAAAGRSGGDMAPFIQKTYDMVDDPTTDEIVSWSSDNKSFIVWNPPEFSRILLPSYF 66

Query: 64 KHNNFSSFIRQLNTY 78
          KHNNFSSFIRQLNTY
Sbjct: 67 KHNNFSSFIRQLNTY 81

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255563602|ref|XP_002522803.1| DNA binding protein, putative [Ricinus communis] gi|223538041|gb|EEF39654.1| DNA binding protein, putative [Ricinus communis]

 Score =  119 bits (297), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 53/59 (89%), Positives = 57/59 (96%)

Query: 20 FLIKTYDMVDDSSTDEIVSWSDNKNSFVVWNPPEFARLLLPTYFKHNNFSSFIRQLNTY 78
          FL+KTYDMVDD++TD+IVSWS  KNSFVVWNPPEFARLLLPTYFKHNNFSSFIRQLNTY
Sbjct: 21 FLLKTYDMVDDTATDDIVSWSSAKNSFVVWNPPEFARLLLPTYFKHNNFSSFIRQLNTY 79

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357454759|ref|XP_003597660.1| Heat stress transcription factor A-5 [Medicago truncatula] gi|355486708|gb|AES67911.1| Heat stress transcription factor A-5 [Medicago truncatula]

 Score =  119 bits (297), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 54/73 (73%), Positives = 62/73 (84%)

Query: 6   ASGGPGGLGGGPAPFLIKTYDMVDDSSTDEIVSWSDNKNSFVVWNPPEFARLLLPTYFKH 65
           +S G G  GG P PF+ KTYDMVDDS+TD+I+SWS   NSF+VWNPPEFA +LLPTYFKH
Sbjct: 43  SSFGGGRNGGNPTPFVQKTYDMVDDSATDDIISWSPMNNSFIVWNPPEFAGVLLPTYFKH 102

Query: 66  NNFSSFIRQLNTY 78
           NNF+SFIRQLNTY
Sbjct: 103 NNFASFIRQLNTY 115

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|298205240|emb|CBI17299.3| unnamed protein product [Vitis vinifera]

 Score =  118 bits (296), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 53/61 (86%), Positives = 58/61 (95%)

Query: 19 PFLIKTYDMVDDSSTDEIVSWSDNKNSFVVWNPPEFARLLLPTYFKHNNFSSFIRQLNTY 78
          PFL+KTY+MVDDSSTDEIVSWS  K+SFVVWNPPEFAR+LLP YFKHNNFSSFIRQLNTY
Sbjct: 20 PFLLKTYEMVDDSSTDEIVSWSSTKSSFVVWNPPEFARVLLPMYFKHNNFSSFIRQLNTY 79

Query: 79 V 79
          +
Sbjct: 80 M 80

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357454757|ref|XP_003597659.1| Heat stress transcription factor A-5 [Medicago truncatula] gi|355486707|gb|AES67910.1| Heat stress transcription factor A-5 [Medicago truncatula]

 Score =  118 bits (295), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 53/64 (82%), Positives = 58/64 (90%)

Query: 15  GGPAPFLIKTYDMVDDSSTDEIVSWSDNKNSFVVWNPPEFARLLLPTYFKHNNFSSFIRQ 74
           GGPAPF+ KTYDMVDDS+TD+IVSWS   NSFVVWNPPEFA +LLPTYFKHNNFSSFI Q
Sbjct: 137 GGPAPFVQKTYDMVDDSATDDIVSWSSTNNSFVVWNPPEFAYVLLPTYFKHNNFSSFIHQ 196

Query: 75  LNTY 78
           L+TY
Sbjct: 197 LDTY 200

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449433171|ref|XP_004134371.1| PREDICTED: heat stress transcription factor A-5-like [Cucumis sativus]

 Score =  117 bits (294), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 53/59 (89%), Positives = 57/59 (96%)

Query: 20 FLIKTYDMVDDSSTDEIVSWSDNKNSFVVWNPPEFARLLLPTYFKHNNFSSFIRQLNTY 78
          FLIKTYDMVDDSSTDEIVSW+ +K SFVVWNPPEFARLLLPT+FKH+NFSSFIRQLNTY
Sbjct: 18 FLIKTYDMVDDSSTDEIVSWTSSKKSFVVWNPPEFARLLLPTFFKHSNFSSFIRQLNTY 76

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	95
TAIR|locus:2129276	466	AT-HSFA5 "AT4G13980" [Arabidop	0.621	0.126	0.847	8.8e-24
TAIR|locus:2005495	495	HSF1 "AT4G17750" [Arabidopsis	0.621	0.119	0.762	5.2e-22
TAIR|locus:2117139	401	HSF A4A "AT4G18880" [Arabidops	0.621	0.147	0.779	6.7e-22
TAIR|locus:2028326	485	HSFA1D "AT1G32330" [Arabidopsi	0.621	0.121	0.796	2.3e-21
TAIR|locus:2825726	348	HSFB4 "AT1G46264" [Arabidopsis	0.621	0.169	0.728	4.9e-21
TAIR|locus:2075447	468	HSFA1E "AT3G02990" [Arabidopsi	0.621	0.126	0.762	5.5e-21
TAIR|locus:2149050	481	HSF3 "AT5G16820" [Arabidopsis	0.621	0.122	0.745	1e-20
TAIR|locus:2172003	345	RHA1 "AT5G45710" [Arabidopsis	0.621	0.171	0.711	1.9e-19
TAIR|locus:2174043	299	HSFB2A "AT5G62020" [Arabidopsi	0.621	0.197	0.627	5.1e-19
TAIR|locus:2115015	284	HSF4 "AT4G36990" [Arabidopsis	0.621	0.207	0.694	6.5e-19

TAIR|locus:2129276 AT-HSFA5 "AT4G13980" [Arabidopsis thaliana (taxid:3702)]

 Score = 277 (102.6 bits), Expect = 8.8e-24, P = 8.8e-24
 Identities = 50/59 (84%), Positives = 55/59 (93%)

Query:    20 FLIKTYDMVDDSSTDEIVSWSDNKNSFVVWNPPEFARLLLPTYFKHNNFSSFIRQLNTY 78
             FL+KTY+MVDDSSTD+IVSWS N NSF+VWN  EF+RLLLPTYFKHNNFSSFIRQLNTY
Sbjct:    24 FLVKTYEMVDDSSTDQIVSWSANNNSFIVWNHAEFSRLLLPTYFKHNNFSSFIRQLNTY 82

GO:0003677 "DNA binding" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0000956 "nuclear-transcribed mRNA catabolic process" evidence=RCA

TAIR|locus:2005495 HSF1 "AT4G17750" [Arabidopsis thaliana (taxid:3702)]

 Score = 253 (94.1 bits), Expect = 5.2e-22, Sum P(2) = 5.2e-22
 Identities = 45/59 (76%), Positives = 51/59 (86%)

Query:    20 FLIKTYDMVDDSSTDEIVSWSDNKNSFVVWNPPEFARLLLPTYFKHNNFSSFIRQLNTY 78
             FL KTYDMV+D +TD IVSWS   NSF+VW+PPEF+R LLP YFKHNNFSSF+RQLNTY
Sbjct:    53 FLSKTYDMVEDPATDAIVSWSPTNNSFIVWDPPEFSRDLLPKYFKHNNFSSFVRQLNTY 111

GO:0003677 "DNA binding" evidence=ISS;IDA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0009408 "response to heat" evidence=IEP;RCA

TAIR|locus:2117139 HSF A4A "AT4G18880" [Arabidopsis thaliana (taxid:3702)]

 Score = 257 (95.5 bits), Expect = 6.7e-22, P = 6.7e-22
 Identities = 46/59 (77%), Positives = 52/59 (88%)

Query:    20 FLIKTYDMVDDSSTDEIVSWSDNKNSFVVWNPPEFARLLLPTYFKHNNFSSFIRQLNTY 78
             FL KTY+MVDDSS+D IVSWS +  SF+VWNPPEF+R LLP +FKHNNFSSFIRQLNTY
Sbjct:    16 FLTKTYEMVDDSSSDSIVSWSQSNKSFIVWNPPEFSRDLLPRFFKHNNFSSFIRQLNTY 74

GO:0003677 "DNA binding" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0010200 "response to chitin" evidence=IEP;RCA

GO:0002679 "respiratory burst involved in defense response" evidence=RCA

GO:0009408 "response to heat" evidence=RCA

GO:0035556 "intracellular signal transduction" evidence=RCA

TAIR|locus:2028326 HSFA1D "AT1G32330" [Arabidopsis thaliana (taxid:3702)]

 Score = 256 (95.2 bits), Expect = 2.3e-21, P = 2.3e-21
 Identities = 47/59 (79%), Positives = 50/59 (84%)

Query:    20 FLIKTYDMVDDSSTDEIVSWSDNKNSFVVWNPPEFARLLLPTYFKHNNFSSFIRQLNTY 78
             FL KTYDMVDD +TD IVSWS N NSF+VW PPEFAR LLP  FKHNNFSSF+RQLNTY
Sbjct:    38 FLSKTYDMVDDHNTDSIVSWSANNNSFIVWKPPEFARDLLPKNFKHNNFSSFVRQLNTY 96

GO:0003677 "DNA binding" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0009408 "response to heat" evidence=IEP

GO:0009407 "toxin catabolic process" evidence=RCA

TAIR|locus:2825726 HSFB4 "AT1G46264" [Arabidopsis thaliana (taxid:3702)]

 Score = 247 (92.0 bits), Expect = 4.9e-21, P = 4.9e-21
 Identities = 43/59 (72%), Positives = 49/59 (83%)

Query:    20 FLIKTYDMVDDSSTDEIVSWSDNKNSFVVWNPPEFARLLLPTYFKHNNFSSFIRQLNTY 78
             FL KTY +VDD +TD +VSW D+  +FVVW PPEFAR LLP YFKHNNFSSF+RQLNTY
Sbjct:    35 FLTKTYQLVDDPATDHVVSWGDDDTTFVVWRPPEFARDLLPNYFKHNNFSSFVRQLNTY 93

GO:0003677 "DNA binding" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0008356 "asymmetric cell division" evidence=IMP

GO:0009408 "response to heat" evidence=RCA

TAIR|locus:2075447 HSFA1E "AT3G02990" [Arabidopsis thaliana (taxid:3702)]

 Score = 252 (93.8 bits), Expect = 5.5e-21, P = 5.5e-21
 Identities = 45/59 (76%), Positives = 49/59 (83%)

Query:    20 FLIKTYDMVDDSSTDEIVSWSDNKNSFVVWNPPEFARLLLPTYFKHNNFSSFIRQLNTY 78
             FL KTYDMVDD  TD++VSWS   NSFVVWN PEFA+  LP YFKHNNFSSF+RQLNTY
Sbjct:    24 FLSKTYDMVDDPLTDDVVSWSSGNNSFVVWNVPEFAKQFLPKYFKHNNFSSFVRQLNTY 82

GO:0003677 "DNA binding" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0009408 "response to heat" evidence=RCA

GO:0010162 "seed dormancy process" evidence=RCA

TAIR|locus:2149050 HSF3 "AT5G16820" [Arabidopsis thaliana (taxid:3702)]

 Score = 250 (93.1 bits), Expect = 1.0e-20, P = 1.0e-20
 Identities = 44/59 (74%), Positives = 51/59 (86%)

Query:    20 FLIKTYDMVDDSSTDEIVSWSDNKNSFVVWNPPEFARLLLPTYFKHNNFSSFIRQLNTY 78
             FL KTYDMVDD  T+E+VSWS   NSFVVW+ PEF+++LLP YFKHNNFSSF+RQLNTY
Sbjct:    28 FLSKTYDMVDDPLTNEVVSWSSGNNSFVVWSAPEFSKVLLPKYFKHNNFSSFVRQLNTY 86

GO:0003677 "DNA binding" evidence=ISS;IDA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS;IMP

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0009408 "response to heat" evidence=IEP;IMP;RCA

TAIR|locus:2172003 RHA1 "AT5G45710" [Arabidopsis thaliana (taxid:3702)]

 Score = 232 (86.7 bits), Expect = 1.9e-19, P = 1.9e-19
 Identities = 42/59 (71%), Positives = 50/59 (84%)

Query:    20 FLIKTYDMVDDSSTDEIVSWSDNKNSFVVWNPPEFARLLLPTYFKHNNFSSFIRQLNTY 78
             FL KTY+MVDDSS+D +V+WS+N  SF+V NP EF+R LLP +FKH NFSSFIRQLNTY
Sbjct:    14 FLTKTYEMVDDSSSDSVVAWSENNKSFIVKNPAEFSRDLLPRFFKHKNFSSFIRQLNTY 72

GO:0003677 "DNA binding" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0009408 "response to heat" evidence=IEP

GO:0009733 "response to auxin stimulus" evidence=RCA;IMP

GO:0009958 "positive gravitropism" evidence=IMP

GO:0048364 "root development" evidence=IMP

GO:0048527 "lateral root development" evidence=RCA;IMP

GO:0048530 "fruit morphogenesis" evidence=IMP

GO:0007165 "signal transduction" evidence=RCA

GO:0009407 "toxin catabolic process" evidence=RCA

GO:0009414 "response to water deprivation" evidence=RCA

GO:0009723 "response to ethylene stimulus" evidence=RCA

GO:0009738 "abscisic acid mediated signaling pathway" evidence=RCA

GO:0009753 "response to jasmonic acid stimulus" evidence=RCA

GO:0042538 "hyperosmotic salinity response" evidence=RCA

GO:0048193 "Golgi vesicle transport" evidence=RCA

TAIR|locus:2174043 HSFB2A "AT5G62020" [Arabidopsis thaliana (taxid:3702)]

 Score = 228 (85.3 bits), Expect = 5.1e-19, P = 5.1e-19
 Identities = 37/59 (62%), Positives = 53/59 (89%)

Query:    20 FLIKTYDMVDDSSTDEIVSWSDNKNSFVVWNPPEFARLLLPTYFKHNNFSSFIRQLNTY 78
             FL KT+++V+DSS D+++SW+++ +SF+VWNP +FA+ LLP +FKHNNFSSF+RQLNTY
Sbjct:    24 FLTKTFNLVEDSSIDDVISWNEDGSSFIVWNPTDFAKDLLPKHFKHNNFSSFVRQLNTY 82

GO:0003677 "DNA binding" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0010200 "response to chitin" evidence=IEP;RCA

GO:0002679 "respiratory burst involved in defense response" evidence=RCA

GO:0035556 "intracellular signal transduction" evidence=RCA

TAIR|locus:2115015 HSF4 "AT4G36990" [Arabidopsis thaliana (taxid:3702)]

 Score = 227 (85.0 bits), Expect = 6.5e-19, P = 6.5e-19
 Identities = 41/59 (69%), Positives = 48/59 (81%)

Query:    20 FLIKTYDMVDDSSTDEIVSWSDNKNSFVVWNPPEFARLLLPTYFKHNNFSSFIRQLNTY 78
             FL KTY +VDD STD++VSW++   +FVVW   EFA+ LLP YFKHNNFSSFIRQLNTY
Sbjct:    15 FLSKTYQLVDDHSTDDVVSWNEEGTAFVVWKTAEFAKDLLPQYFKHNNFSSFIRQLNTY 73

GO:0003677 "DNA binding" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=IDA

GO:0006984 "ER-nucleus signaling pathway" evidence=RCA

GO:0009407 "toxin catabolic process" evidence=RCA

GO:0009414 "response to water deprivation" evidence=RCA

GO:0009737 "response to abscisic acid stimulus" evidence=RCA

GO:0010583 "response to cyclopentenone" evidence=RCA

GO:0030968 "endoplasmic reticulum unfolded protein response" evidence=RCA

GO:0034976 "response to endoplasmic reticulum stress" evidence=RCA

GO:0042538 "hyperosmotic salinity response" evidence=RCA

GO:0009408 "response to heat" evidence=IEP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q94BZ5	HSFA5_ARATH	No assigned EC number	0.8474	0.6210	0.1266	yes	no
Q7XHZ0	HFB4B_ORYSJ	No assigned EC number	0.7419	0.6526	0.2	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: eugene3.00880024 hypothetical protein (486 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	95
pfam00447	96	pfam00447, HSF_DNA-bind, HSF-type DNA-binding	2e-35
smart00415	105	smart00415, HSF, heat shock factor	9e-35
COG5169	282	COG5169, HSF1, Heat shock transcription factor [Tr	1e-20

>gnl|CDD|215924 pfam00447, HSF_DNA-bind, HSF-type DNA-binding

 Score =  115 bits (290), Expect = 2e-35
 Identities = 37/60 (61%), Positives = 51/60 (85%)

Query: 19 PFLIKTYDMVDDSSTDEIVSWSDNKNSFVVWNPPEFARLLLPTYFKHNNFSSFIRQLNTY 78
          PFL K Y++++D S D+I+SWS++ NSF++W+P EFA+ +LP YFKHNNFSSF+RQLN Y
Sbjct: 1  PFLHKLYEILEDPSYDDIISWSEDGNSFIIWDPEEFAKQVLPKYFKHNNFSSFVRQLNMY 60

Length = 96

>gnl|CDD|214654 smart00415, HSF, heat shock factor

 Score =  114 bits (287), Expect = 9e-35
 Identities = 41/63 (65%), Positives = 50/63 (79%)

Query: 16 GPAPFLIKTYDMVDDSSTDEIVSWSDNKNSFVVWNPPEFARLLLPTYFKHNNFSSFIRQL 75
           P PFL K Y +V+D STD+I+SWS +  SFV+W+P EFA+ LLP YFKHNNFSSF+RQL
Sbjct: 1  QPPPFLTKLYLLVEDPSTDKIISWSPSGKSFVIWDPEEFAKNLLPRYFKHNNFSSFVRQL 60

Query: 76 NTY 78
          N Y
Sbjct: 61 NMY 63

Length = 105

>gnl|CDD|227497 COG5169, HSF1, Heat shock transcription factor [Transcription]

 Score = 82.5 bits (204), Expect = 1e-20
 Identities = 27/62 (43%), Positives = 43/62 (69%)

Query: 17 PAPFLIKTYDMVDDSSTDEIVSWSDNKNSFVVWNPPEFARLLLPTYFKHNNFSSFIRQLN 76
          P  F+ K Y ++++    +++ WS +  SFV+ +P EF +++LP YFKH NF+SF+RQLN
Sbjct: 10 PKEFVHKLYQILEEPEYYKLIQWSPDGRSFVILDPEEFTKVILPRYFKHGNFASFVRQLN 69

Query: 77 TY 78
           Y
Sbjct: 70 KY 71

Length = 282

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	95
smart00415	105	HSF heat shock factor.	99.97
PF00447	103	HSF_DNA-bind: HSF-type DNA-binding; InterPro: IPR0	99.97
COG5169	282	HSF1 Heat shock transcription factor [Transcriptio	99.97
KOG0627	304	consensus Heat shock transcription factor [Transcr	99.96
PF00178	85	Ets: Ets-domain; InterPro: IPR000418 Transcription	97.71
smart00413	87	ETS erythroblast transformation specific domain. v	97.23
KOG3806	177	consensus Predicted transcription factor [Transcri	96.88
KOG3805	361	consensus ERG and related ETS transcription factor	89.79
PF07676	39	PD40: WD40-like Beta Propeller Repeat; InterPro: I	88.37

>smart00415 HSF heat shock factor

Probab=99.97  E-value=2.2e-32  Score=180.74  Aligned_cols=79  Identities=54%  Similarity=0.973  Sum_probs=74.3

Q ss_pred             CCCcHHHHHHHhccCCCCCceeEEecCCCeEEEeCchhhHHhhcccccCCcCchhhhhccccCCceEeccC---------
Q 034429           16 GPAPFLIKTYDMVDDSSTDEIVSWSDNKNSFVVWNPPEFARLLLPTYFKHNNFSSFIRQLNTYVQIIINKS---------   86 (95)
Q Consensus        16 ~~~~F~~kL~~ml~~~~~~~iI~W~~~G~sfiI~d~~~f~~~vLp~~F~~~~~~SF~RqLn~YGF~kv~~~---------   86 (95)
                      +++.|+.|||+||+|+++++||+|++||++|+|+|++.|++.|||+||+|++|+||+||||+|||+|+...         
T Consensus         1 ~~~~F~~kL~~~l~~~~~~~iI~W~~~G~~f~I~d~~~f~~~vLp~~Fk~~~~~SF~RqLn~yGF~k~~~~~~~~~~~~~   80 (105)
T smart00415        1 QPPPFLTKLYLLVEDPSTDKIISWSPSGKSFVIWDPEEFAKNLLPRYFKHNNFSSFVRQLNMYGFRKVDPEFQGILYNFT   80 (105)
T ss_pred             CCCcHHHHHHHHHhCCCCCCEEEECCCCCEEEEcCHHHHHHHHHHHhcCCCCHHHHHHHHHhcCCEEeccccccccccCC
Confidence            46899999999999999999999999999999999999999999999999999999999999999999873         


Q ss_pred             -CCCccCCC
Q 034429           87 -FLWNHDNA   94 (95)
Q Consensus        87 -~~~~~~~~   94 (95)
                       ..|+|.|.
T Consensus        81 ~~~~~F~h~   89 (105)
T smart00415       81 SDQWEFANP   89 (105)
T ss_pred             CCceEEECc
Confidence             57888775

>PF00447 HSF_DNA-bind: HSF-type DNA-binding; InterPro: IPR000232 Heat shock factor (HSF) is a transcriptional activator of heat shock genes []: it binds specifically to heat shock promoter elements, which are palindromic sequences rich with repetitive purine and pyrimidine motifs []

Probab=99.97  E-value=6.7e-33  Score=181.88  Aligned_cols=76  Identities=41%  Similarity=0.823  Sum_probs=67.8

Q ss_pred             cHHHHHHHhccCCCCCceeEEecCCCeEEEeCchhhHHhhcccccCCcCchhhhhccccCCceEeccCCC--------Cc
Q 034429           19 PFLIKTYDMVDDSSTDEIVSWSDNKNSFVVWNPPEFARLLLPTYFKHNNFSSFIRQLNTYVQIIINKSFL--------WN   90 (95)
Q Consensus        19 ~F~~kL~~ml~~~~~~~iI~W~~~G~sfiI~d~~~f~~~vLp~~F~~~~~~SF~RqLn~YGF~kv~~~~~--------~~   90 (95)
                      +|+.|||+||++++++++|+|++||++|||+|+++|+++|||+||+|++|+||+||||+|||+|+.....        |+
T Consensus         1 ~F~~kL~~~l~~~~~~~~I~W~~~G~~fiI~d~~~f~~~vLp~~F~~~~~~SF~RQLn~yGF~k~~~~~~~~~~~~~~~~   80 (103)
T PF00447_consen    1 KFLSKLYEMLEDPENSDIIRWSPDGDSFIIHDPEEFEKEVLPKYFKHSNFSSFVRQLNMYGFKKVSSDSNQSSLSSNIWE   80 (103)
T ss_dssp             HHHHHHHHHHCTTTTTTTCEECTTSSEEEES-HHHHHHHTHHHHSST--HHHHHHHHHHTTEEECC-SSCTTSSTTTTEE
T ss_pred             ChHHHHHHHHcCCCCCCEEEEeCCCCEEEEeecHHHhhhccccccCccccceeeeEeeeeeeEEEecCccccccCCCCeE
Confidence            5999999999999999999999999999999999999999999999999999999999999999998753        77


Q ss_pred             cCCC
Q 034429           91 HDNA   94 (95)
Q Consensus        91 ~~~~   94 (95)
                      |.|+
T Consensus        81 f~h~   84 (103)
T PF00447_consen   81 FYHP   84 (103)
T ss_dssp             EEET
T ss_pred             ECCc
Confidence            7774

Under normal conditions, HSF is a homo-trimeric cytoplasmic protein, but heat shock activation results in relocalisation to the nucleus []. Each HSF monomer contains one C-terminal and three N-terminal leucine zipper repeats []. Point mutations in these regions result in disruption of cellular localisation, rendering the protein constitutively nuclear []. Two sequences flanking the N-terminal zippers fit the consensus of a bi- partite nuclear localisation signal (NLS). Interaction between the N- and C-terminal zippers may result in a structure that masks the NLS sequences: following activation of HSF, these may then be unmasked, resulting in relocalisation of the protein to the nucleus []. The DNA-binding component of HSF lies to the N terminus of the first NLS region, and is referred to as the HSF domain.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 1FBQ_B 1FYL_B 1FBS_A 1FYM_B 3HTS_B 2HTS_A 3HSF_A 1FBU_B 1FYK_A 2LDU_A ....

>COG5169 HSF1 Heat shock transcription factor [Transcription]

Probab=99.97  E-value=3.8e-31  Score=200.57  Aligned_cols=85  Identities=36%  Similarity=0.736  Sum_probs=77.8

Q ss_pred             CCCCCCCCCcHHHHHHHhccCCCCCceeEEecCCCeEEEeCchhhHHhhcccccCCcCchhhhhccccCCceEec-cC--
Q 034429           10 PGGLGGGPAPFLIKTYDMVDDSSTDEIVSWSDNKNSFVVWNPPEFARLLLPTYFKHNNFSSFIRQLNTYVQIIIN-KS--   86 (95)
Q Consensus        10 ~~~~~~~~~~F~~kL~~ml~~~~~~~iI~W~~~G~sfiI~d~~~f~~~vLp~~F~~~~~~SF~RqLn~YGF~kv~-~~--   86 (95)
                      .++...++..|+.|||.||++|++.++|+|+|||++|+|.|++.|.+.|||+||+|++|+||+||||+|||+||. .+  
T Consensus         3 ~s~~~~~~~~FV~KLy~iLe~~e~~k~I~Ws~~G~sfvI~~~~~F~~~iLpr~FKh~NfaSFVRQLN~YgFhKv~h~~~~   82 (282)
T COG5169           3 MSSRWSQPKEFVHKLYQILEEPEYYKLIQWSPDGRSFVILDPEEFTKVILPRYFKHGNFASFVRQLNKYGFHKVSHKSGQ   82 (282)
T ss_pred             CCcCCCchhHHHHHHHHHhcCcccCCceEECCCCCEEEEeCcchhhhhhhhhhhcccCHHHHHHHHHhcCcEeccCCccc
Confidence            355677788999999999999999999999999999999999999999999999999999999999999999999 32  


Q ss_pred             ------CCCccCCC
Q 034429           87 ------FLWNHDNA   94 (95)
Q Consensus        87 ------~~~~~~~~   94 (95)
                            ..|||.|.
T Consensus        83 ~~~~n~~~wef~~~   96 (282)
T COG5169          83 RSYYNENVWEFGNK   96 (282)
T ss_pred             ccccchhheeecCc
Confidence                  34998874

>KOG0627 consensus Heat shock transcription factor [Transcription]

Probab=99.96  E-value=1.5e-30  Score=196.94  Aligned_cols=82  Identities=61%  Similarity=1.053  Sum_probs=77.4

Q ss_pred             CCCCCCcHHHHHHHhccCCCCCceeEEecCCCeEEEeCchhhHHhhcccccCCcCchhhhhccccCCceEec-cCCCCcc
Q 034429           13 LGGGPAPFLIKTYDMVDDSSTDEIVSWSDNKNSFVVWNPPEFARLLLPTYFKHNNFSSFIRQLNTYVQIIIN-KSFLWNH   91 (95)
Q Consensus        13 ~~~~~~~F~~kL~~ml~~~~~~~iI~W~~~G~sfiI~d~~~f~~~vLp~~F~~~~~~SF~RqLn~YGF~kv~-~~~~~~~   91 (95)
                      ....+++|+.|||+||+||+++++|+|+++|++|||+|+.+|.+.+||+||+|+||+||+||||+|||+|+. ....|||
T Consensus         8 ~~~~~~~Fl~K~y~~v~Dps~~~iisWs~~g~sFvv~d~~~F~~~~Lp~~FKh~NfsSFvRQLN~YgFrKv~~~~~~wEF   87 (304)
T KOG0627|consen    8 EASGPPPFLEKLYEMVEDPSTDEIISWSPSGNSFVIWNPEEFAKVLLPLYFKHNNFSSFVRQLNMYGFRKVDFKSDRWEF   87 (304)
T ss_pred             ccCCCCcHHHHHHHHhcCCCCCCceEECCCCCccccCCHHHHHHHHhHHhccccCccceeeeecccceeecCCCCCceee
Confidence            344899999999999999999999999999999999999999999999999999999999999999999999 4558999


Q ss_pred             CCC
Q 034429           92 DNA   94 (95)
Q Consensus        92 ~~~   94 (95)
                      .|.
T Consensus        88 ~n~   90 (304)
T KOG0627|consen   88 SNP   90 (304)
T ss_pred             cCh
Confidence            885

>PF00178 Ets: Ets-domain; InterPro: IPR000418 Transcription factors are protein molecules that bind to specific DNA sequences in the genome, resulting in the induction or inhibition of gene transcription []

Probab=97.71  E-value=2.4e-05  Score=50.26  Aligned_cols=59  Identities=22%  Similarity=0.440  Sum_probs=45.4

Q ss_pred             HHHHHHHhccCCCCCceeEEec-CCCeEEEeCchhhHHhhc-ccccCCcCchhhhhccccC
Q 034429           20 FLIKTYDMVDDSSTDEIVSWSD-NKNSFVVWNPPEFARLLL-PTYFKHNNFSSFIRQLNTY   78 (95)
Q Consensus        20 F~~kL~~ml~~~~~~~iI~W~~-~G~sfiI~d~~~f~~~vL-p~~F~~~~~~SF~RqLn~Y   78 (95)
                      +-.=|.++|+|+++.++|+|++ ++..|.|.|++++++.=- -+-=..-+|.++.|-|..|
T Consensus         4 Lw~FLl~LL~d~~~~~~I~Wt~~~~~eFki~d~~~vA~lWG~~k~~~~m~yeklsR~LR~y   64 (85)
T PF00178_consen    4 LWQFLLELLEDPSNSDIIAWTGKRGGEFKIVDPEAVARLWGKHKNRPNMNYEKLSRALRYY   64 (85)
T ss_dssp             HHHHHHHHHHSGGGTTTEEEEETSTTEEEESSHHHHHHHHHHHTTSTT-SHHHHHHHHHHH
T ss_pred             HHHHHHHHhcCccCCCeeEeeccCCCeEEecCHHHHHHHHHHHcCCccccHHHHHHHHHHH
Confidence            4455788999999999999999 999999999999986311 1112345789999988776

The ets oncogene is such a factor, possessing a region of 85-90 amino acids known as the ETS (erythroblast transformation specific) domain [, , ]. This domain is rich in positively-charged and aromatic residues, and binds to purine-rich segments of DNA. The ETS domain has been identified in other transcription factors such as PU.1, human erg, human elf-1, human elk-1, GA binding protein, and a number of others [, , ]. It is generally localized at the C terminus of the protein, with the exception of ELF-1, ELK-1, ELK-3, ELK-4 and ERF where it is found at the N terminus. NMR-analysis of the structure of the Ets domains revealed that it contains three alpha-helixes (1-3) and four-stranded beta-sheets (1-4) arranged in the order alpha1-beta1-beta2-alpha2-alpha3-beta3-beta4 forming a winged helix-turn-helix (wHTH) topology []. The third alpha-helix is responsive to contact to the major groove of the DNA. Different members of the Ets family proteins display distinct DNA binding specificities. The Ets domains and the flanking amino acid sequences of the proteins influence the binding affinity, and the alteration of a single amino acid in the Ets domain can change its DNA binding specificities. Avian leukemia virus E26 is a replication defective retrovirus that induces a mixed erythroid/myeloid leukemia in chickens.This virus carries two distinct oncogenes: v-myb and v-ets. The ets portion of this oncogene is required for the induction of erythroblastosis. V-ets and c-ets-1, its cellular progenitor, have been shown [] to be nuclear DNA-binding proteins. Ets-1 differs slightly from v-ets at its carboxy-terminal region. In most species where it has been sequenced, c-ets-1 exists in various isoforms generated by alternative splicing and differential phosphorylation.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1DUX_F 4AVP_B 1HBX_G 1BC7_C 1K6O_A 1BC8_C 1PUE_E 1FLI_A 2DAO_A 1WWX_A ....

>smart00413 ETS erythroblast transformation specific domain

Probab=97.23  E-value=0.00051  Score=44.50  Aligned_cols=59  Identities=25%  Similarity=0.428  Sum_probs=44.9

Q ss_pred             HHHHHHhccCCCCCceeEEec-CCCeEEEeCchhhHHhhccc-ccCCcCchhhhhccccCC
Q 034429           21 LIKTYDMVDDSSTDEIVSWSD-NKNSFVVWNPPEFARLLLPT-YFKHNNFSSFIRQLNTYV   79 (95)
Q Consensus        21 ~~kL~~ml~~~~~~~iI~W~~-~G~sfiI~d~~~f~~~vLp~-~F~~~~~~SF~RqLn~YG   79 (95)
                      .+=|.++|.||++.++|+|++ ++..|.+.|+++.++.=-.+ -=..-+|..+.|-|.+|-
T Consensus         5 w~FL~~LL~d~~~~~~I~W~~k~~g~Fkl~~~~~vA~lWG~~Knk~~M~YeklSRaLRyyy   65 (87)
T smart00413        5 WQFLLDLLLDPENGDIIRWTDRDGGEFKLVDPEEVARLWGQRKNKPNMNYEKLSRALRYYY   65 (87)
T ss_pred             HHHHHHHHcCccCCCeEEeeCCCCCEEEecCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHH
Confidence            455889999999999999998 68899999998877642211 113357888889888764

variation of the helix-turn-helix motif

>KOG3806 consensus Predicted transcription factor [Transcription]

Probab=96.88  E-value=0.0029  Score=45.70  Aligned_cols=69  Identities=23%  Similarity=0.402  Sum_probs=51.3

Q ss_pred             CCCCCCCCCcHHHHHHHhccCCCCCceeEEec-CCCeEEEeCchhhHHhhcccc-cCCcCchhhhhccccC
Q 034429           10 PGGLGGGPAPFLIKTYDMVDDSSTDEIVSWSD-NKNSFVVWNPPEFARLLLPTY-FKHNNFSSFIRQLNTY   78 (95)
Q Consensus        10 ~~~~~~~~~~F~~kL~~ml~~~~~~~iI~W~~-~G~sfiI~d~~~f~~~vLp~~-F~~~~~~SF~RqLn~Y   78 (95)
                      .+..+++.....+=|.++|+|+++.++|.|+. +|--|.+.|+++.++.=-.+= =-.=||.-.-|-|.+|
T Consensus        61 ~s~~~sg~iqLwqFLleLl~d~~~~~~I~Wtg~~g~EFkl~dp~eVArlWG~rK~kp~MNYdKLSRaLRyy  131 (177)
T KOG3806|consen   61 ESTSGSGQIQLWQFLLELLQDESNAHIIAWTGKDGLEFKLVDPDEVARLWGARKNKPNMNYDKLSRALRYY  131 (177)
T ss_pred             ccCCCCchhhHHHHHHHHHhCcccCCeeEEeCCCCceEEecCHHHHHHHHhhhhCCCCCCHHHHHHHHHHH
Confidence            34445557777888889999999999999998 788899999999887533221 1224677777777665

>KOG3805 consensus ERG and related ETS transcription factors [Transcription]

Probab=89.79  E-value=0.69  Score=36.52  Aligned_cols=70  Identities=20%  Similarity=0.287  Sum_probs=49.6

Q ss_pred             CCCCCCCcHHHHHHHhccCCC-CCceeEEec-CCCeEEEeCchhhHHhhccc-ccCCcCchhhhhccccCCce
Q 034429           12 GLGGGPAPFLIKTYDMVDDSS-TDEIVSWSD-NKNSFVVWNPPEFARLLLPT-YFKHNNFSSFIRQLNTYVQI   81 (95)
Q Consensus        12 ~~~~~~~~F~~kL~~ml~~~~-~~~iI~W~~-~G~sfiI~d~~~f~~~vLp~-~F~~~~~~SF~RqLn~YGF~   81 (95)
                      |.+...-..-+-|.++|..|. +.++|+|-+ |-..|-|.+.+++++.=--+ .=+.-||.-..|-|..||=+
T Consensus       267 g~~kk~IhLwQFLkELL~sP~~~~~~IrWVDkdKGiFkiess~~lArlWG~RKNR~~MnYdKlsRslRqYyKk  339 (361)
T KOG3805|consen  267 GKGKKKIHLWQFLKELLYSPEQMGSCIRWVDKDKGIFKIESSEKLARLWGIRKNRKAMNYDKLSRSLRQYYKK  339 (361)
T ss_pred             CCCcceeeHHHHHHHHHhChhhhchheEeeccCCceEEeecHHHHHHHhhhhcccccccHHHHHHHHHHHhhc
Confidence            334556667777889999997 899999965 66778888876665532111 12446788888999888754

>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=88.37  E-value=0.19  Score=26.48  Aligned_cols=24  Identities=13%  Similarity=0.291  Sum_probs=17.4

Q ss_pred             HhccCCCCCceeEEecCCCeEEEe
Q 034429           26 DMVDDSSTDEIVSWSDNKNSFVVW   49 (95)
Q Consensus        26 ~ml~~~~~~~iI~W~~~G~sfiI~   49 (95)
                      .+++.+..+....|+|||+.|+-.
T Consensus         3 ~~t~~~~~~~~p~~SpDGk~i~f~   26 (39)
T PF07676_consen    3 QLTNSPGDDGSPAWSPDGKYIYFT   26 (39)
T ss_dssp             EES-SSSSEEEEEE-TTSSEEEEE
T ss_pred             CcccCCccccCEEEecCCCEEEEE
Confidence            456777777888999999988764

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	95
2ldu_A	125	Solution Nmr Structure Of Heat Shock Factor Protein		8e-13
1hks_A	106	Solution Structure Of The Dna-Binding Domain Of Dro		2e-12
3hts_B	102	Heat Shock Transcription FactorDNA COMPLEX Length =		2e-11
1fym_A	92	Serendipitous Crystal Structure Containing The Heat		3e-11
1fbu_A	90	Heat Shock Transcription Factor Dna Binding Domain		4e-11
1fyk_A	92	Serendipitous Crystal Structure Containing The Heat		3e-10
1fbs_A	90	Heat Shock Transcription Factor Dna Binding Domain		3e-10
1fbq_A	90	Heat Shock Transcription Factor Dna Binding Domain		3e-10

>pdb|2LDU|A Chain A, Solution Nmr Structure Of Heat Shock Factor Protein 1 Dna Binding Domain From Homo Sapiens, Northeast Structural Genomics Consortium Target Hr3023c Length = 125

Iteration: 1
 Score = 68.6 bits (166), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 30/59 (50%), Positives = 42/59 (71%)
Query: 20 FLIKTYDMVDDSSTDEIVSWSDNKNSFVVWNPPEFARLLLPTYFKHNNFSSFIRQLNTY 78
          FL K + +V D  TD ++ WS + NSF V++  +FA+ +LP YFKHNN +SF+RQLN Y
Sbjct: 20 FLTKLWTLVSDPDTDALICWSPSGNSFHVFDQGQFAKEVLPKYFKHNNMASFVRQLNMY 78

>pdb|1HKS|A Chain A, Solution Structure Of The Dna-Binding Domain Of Drosophila Heat Shock Transcription Factor Length = 106

Iteration: 1
 Score = 67.4 bits (163), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 29/59 (49%), Positives = 42/59 (71%)
Query: 20 FLIKTYDMVDDSSTDEIVSWSDNKNSFVVWNPPEFARLLLPTYFKHNNFSSFIRQLNTY 78
          FL K + +VDD+ T+ ++ W+ +  SFV+ N  +FA+ LLP  +KHNN +SFIRQLN Y
Sbjct: 7  FLAKLWRLVDDADTNRLICWTKDGQSFVIQNQAQFAKELLPLNYKHNNMASFIRQLNMY 65

>pdb|3HTS|B Chain B, Heat Shock Transcription FactorDNA COMPLEX Length = 102

Iteration: 1
 Score = 63.9 bits (154), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 34/77 (44%), Positives = 49/77 (63%), Gaps = 4/77 (5%)
Query: 20 FLIKTYDMVDDSSTDEIVSWSDNKNSFVVWNPPEFARLLLPTYFKHNNFSSFIRQLNTY- 78
          F+ K + MV+D S ++ + WS +  S VV N   F + +LP YFKH+NF+SF+RQLN Y 
Sbjct: 15 FVNKLWSMVNDKSNEKFIHWSTSGESIVVPNRERFVQEVLPKYFKHSNFASFVRQLNMYG 74
Query: 79 ---VQIIINKSFLWNHD 92
             VQ + + S L N+D
Sbjct: 75 WHKVQDVKSGSMLSNND 91

>pdb|1FYM|A Chain A, Serendipitous Crystal Structure Containing The Heat Shock Transcription Factor's Dna Binding Domain And Cognate Dna In A Tail-To-Tail Orientation Length = 92

Iteration: 1
 Score = 63.2 bits (152), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 34/77 (44%), Positives = 49/77 (63%), Gaps = 4/77 (5%)
Query: 20 FLIKTYDMVDDSSTDEIVSWSDNKNSFVVWNPPEFARLLLPTYFKHNNFSSFIRQLNTY- 78
          F+ K + MV+D S ++ + WS +  S VV N   F + +LP YFKH+NF+SF+RQLN Y 
Sbjct: 5  FVNKLWSMVNDKSNEKFIHWSTSGESIVVPNRERFVQEVLPKYFKHSNFASFVRQLNMYG 64
Query: 79 ---VQIIINKSFLWNHD 92
             VQ + + S L N+D
Sbjct: 65 WHKVQDVKSGSMLSNND 81

>pdb|1FBU|A Chain A, Heat Shock Transcription Factor Dna Binding Domain Length = 90

Iteration: 1
 Score = 62.8 bits (151), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 34/77 (44%), Positives = 49/77 (63%), Gaps = 4/77 (5%)
Query: 20 FLIKTYDMVDDSSTDEIVSWSDNKNSFVVWNPPEFARLLLPTYFKHNNFSSFIRQLNTY- 78
          F+ K + MV+D S ++ + WS +  S VV N   F + +LP YFKH+NF+SF+RQLN Y 
Sbjct: 3  FVNKLWSMVNDKSNEKFIHWSTSGESIVVPNRERFVQEVLPKYFKHSNFASFVRQLNMYG 62
Query: 79 ---VQIIINKSFLWNHD 92
             VQ + + S L N+D
Sbjct: 63 WHKVQDVKSGSMLSNND 79

>pdb|1FYK|A Chain A, Serendipitous Crystal Structure Containing The Heat Shock Transcription Factor's Dna Binding Domain And Cognate Dna That Is Translationally Disordered Length = 92

Iteration: 1
 Score = 60.1 bits (144), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 33/77 (42%), Positives = 48/77 (62%), Gaps = 4/77 (5%)
Query: 20 FLIKTYDMVDDSSTDEIVSWSDNKNSFVVWNPPEFARLLLPTYFKHNNFSSFIRQLNTY- 78
          F+ K +  V+D S ++ + WS +  S VV N   F + +LP YFKH+NF+SF+RQLN Y 
Sbjct: 5  FVNKLWSXVNDKSNEKFIHWSTSGESIVVPNRERFVQEVLPKYFKHSNFASFVRQLNXYG 64
Query: 79 ---VQIIINKSFLWNHD 92
             VQ + + S L N+D
Sbjct: 65 WHKVQDVKSGSXLSNND 81

>pdb|1FBS|A Chain A, Heat Shock Transcription Factor Dna Binding Domain Containing The P237a Mutation Length = 90

Iteration: 1
 Score = 60.1 bits (144), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 33/77 (42%), Positives = 48/77 (62%), Gaps = 4/77 (5%)
Query: 20 FLIKTYDMVDDSSTDEIVSWSDNKNSFVVWNPPEFARLLLPTYFKHNNFSSFIRQLNTY- 78
          F+ K + MV+D S ++ + WS +  S VV N   F + +L  YFKH+NF+SF+RQLN Y 
Sbjct: 3  FVNKLWSMVNDKSNEKFIHWSTSGESIVVPNRERFVQEVLAKYFKHSNFASFVRQLNMYG 62
Query: 79 ---VQIIINKSFLWNHD 92
             VQ + + S L N+D
Sbjct: 63 WHKVQDVKSGSMLSNND 79

>pdb|1FBQ|A Chain A, Heat Shock Transcription Factor Dna Binding Domain Containing The P237k Mutation Length = 90

Iteration: 1
 Score = 60.1 bits (144), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 33/77 (42%), Positives = 48/77 (62%), Gaps = 4/77 (5%)
Query: 20 FLIKTYDMVDDSSTDEIVSWSDNKNSFVVWNPPEFARLLLPTYFKHNNFSSFIRQLNTY- 78
          F+ K + MV+D S ++ + WS +  S VV N   F + +L  YFKH+NF+SF+RQLN Y 
Sbjct: 3  FVNKLWSMVNDKSNEKFIHWSTSGESIVVPNRERFVQEVLKKYFKHSNFASFVRQLNMYG 62
Query: 79 ---VQIIINKSFLWNHD 92
             VQ + + S L N+D
Sbjct: 63 WHKVQDVKSGSMLSNND 79

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	95
1hks_A	106	Heat-shock transcription factor; transcription reg	6e-37
3hts_B	102	Heat shock transcription factor; transcription reg	1e-35
2ldu_A	125	Heat shock factor protein 1; structural genomics,	2e-34

>1hks_A Heat-shock transcription factor; transcription regulation; NMR {Drosophila melanogaster} SCOP: a.4.5.22 PDB: 1hkt_A Length = 106

 Score =  119 bits (300), Expect = 6e-37
 Identities = 31/65 (47%), Positives = 44/65 (67%)

Query: 14 GGGPAPFLIKTYDMVDDSSTDEIVSWSDNKNSFVVWNPPEFARLLLPTYFKHNNFSSFIR 73
          G G   FL K + +VDD+ T+ ++ W+ +  SFV+ N  +FA+ LLP  +KHNN +SFIR
Sbjct: 1  GSGVPAFLAKLWRLVDDADTNRLICWTKDGQSFVIQNQAQFAKELLPLNYKHNNMASFIR 60

Query: 74 QLNTY 78
          QLN Y
Sbjct: 61 QLNMY 65

>3hts_B Heat shock transcription factor; transcription regulation, DNA-binding protein, complex (WING helix_TURN_ helix-DNA); 1.75A {Kluyveromyces lactis} SCOP: a.4.5.22 PDB: 2hts_A 1fyk_A* 1fym_A 1fyl_A 3hsf_A 1fbu_A 1fbs_A 1fbq_A Length = 102

 Score =  116 bits (291), Expect = 1e-35
 Identities = 29/73 (39%), Positives = 41/73 (56%)

Query: 6  ASGGPGGLGGGPAPFLIKTYDMVDDSSTDEIVSWSDNKNSFVVWNPPEFARLLLPTYFKH 65
           S            F+ K + MV+D S ++ + WS +  S VV N   F + +LP YFKH
Sbjct: 1  GSRRASVGSMARPAFVNKLWSMVNDKSNEKFIHWSTSGESIVVPNRERFVQEVLPKYFKH 60

Query: 66 NNFSSFIRQLNTY 78
          +NF+SF+RQLN Y
Sbjct: 61 SNFASFVRQLNMY 73

>2ldu_A Heat shock factor protein 1; structural genomics, northeast structural genomics consortiu DNA-binding, PSI-biology, protein structure initiative; NMR {Homo sapiens} Length = 125

 Score =  113 bits (284), Expect = 2e-34
 Identities = 30/63 (47%), Positives = 42/63 (66%)

Query: 16 GPAPFLIKTYDMVDDSSTDEIVSWSDNKNSFVVWNPPEFARLLLPTYFKHNNFSSFIRQL 75
              FL K + +V D  TD ++ WS + NSF V++  +FA+ +LP YFKHNN +SF+RQL
Sbjct: 16 NVPAFLTKLWTLVSDPDTDALICWSPSGNSFHVFDQGQFAKEVLPKYFKHNNMASFVRQL 75

Query: 76 NTY 78
          N Y
Sbjct: 76 NMY 78

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	95
3hts_B	102	Heat shock transcription factor; transcription reg	100.0
1hks_A	106	Heat-shock transcription factor; transcription reg	100.0
2ldu_A	125	Heat shock factor protein 1; structural genomics,	100.0
4avp_A	106	ETS translocation variant 1; transcription, transc	96.7
1wwx_A	107	E74-like factor 5 ESE-2B; DNA binding, transcripti	96.68
2dao_A	118	Transcription factor ETV6; ETS domain, structural	96.66
1fli_A	98	FLI-1; transcription/DNA; NMR {Homo sapiens} SCOP:	96.64
2ypr_A	102	Protein FEV; transcription; 2.64A {Homo sapiens} P	96.5
1bc8_C	93	SAP-1, protein (SAP-1 ETS domain); DNA-binding dom	96.44
1awc_A	110	Protein (GA binding protein alpha); complex (trans	96.43
1gvj_A	146	C-ETS-1 protein, P54; transcription, autoinhibitio	96.16
2nny_A	171	C-ETS-1 protein, P54; protein-DNA complex, transcr	96.14
1yo5_C	97	SAM pointed domain containing ETS transcription fa	95.99
3jtg_A	103	ETS-related transcription factor ELF-3; ELF3, prot	95.78
1hbx_G	157	ETS-domain protein ELK-4; gene regulation, transcr	95.18
1pue_E	89	Protein (transcription factor PU.1 (TF PU.1)); com	94.64
2lf8_A	128	Transcription factor ETV6; auto-inhibition; NMR {M	92.3

>3hts_B Heat shock transcription factor; transcription regulation, DNA-binding protein, complex (WING helix_TURN_ helix-DNA); 1.75A {Kluyveromyces lactis} SCOP: a.4.5.22 PDB: 2hts_A 1fyk_A* 1fym_A 1fyl_A 3hsf_A 1fbu_A 1fbs_A 1fbq_A

Probab=100.00  E-value=2.4e-37  Score=203.92  Aligned_cols=86  Identities=35%  Similarity=0.595  Sum_probs=75.4

Q ss_pred             CCCCCCCCCCcHHHHHHHhccCCCCCceeEEecCCCeEEEeCchhhHHhhcccccCCcCchhhhhccccCCceEecc---
Q 034429            9 GPGGLGGGPAPFLIKTYDMVDDSSTDEIVSWSDNKNSFVVWNPPEFARLLLPTYFKHNNFSSFIRQLNTYVQIIINK---   85 (95)
Q Consensus         9 ~~~~~~~~~~~F~~kL~~ml~~~~~~~iI~W~~~G~sfiI~d~~~f~~~vLp~~F~~~~~~SF~RqLn~YGF~kv~~---   85 (95)
                      -++.+...+++|+.|||+||+||++++||+|+++|++|+|+|+++|+++|||+||+|++|+||+||||+|||+|+.+   
T Consensus         4 ~~s~~~~~~p~F~~KL~~ml~d~~~~~iI~W~~~G~sfiI~d~~~F~~~VLp~yFkh~nfsSFvRQLN~YGF~Kv~~~~~   83 (102)
T 3hts_B            4 RASVGSMARPAFVNKLWSMVNDKSNEKFIHWSTSGESIVVPNRERFVQEVLPKYFKHSNFASFVRQLNMYGWHKVQDVKS   83 (102)
T ss_dssp             ------CCSCHHHHHHHHHHHCGGGTTTSEECTTSCSEEESCHHHHHHHTHHHHCSSCCHHHHHHHHHHTTEEECC----
T ss_pred             ccCCCCCCCCcHHHHHHHHhcCCCCCCEEEEeCCCCEEEEcCHHHHHHHHHHHhcCCCcHHHHHHHhhcCCceEeecccc
Confidence            34556788999999999999999999999999999999999999999999999999999999999999999999982   


Q ss_pred             -------CCCCccCCC
Q 034429           86 -------SFLWNHDNA   94 (95)
Q Consensus        86 -------~~~~~~~~~   94 (95)
                             +..|||.|.
T Consensus        84 g~~~~~~~~~wEF~n~   99 (102)
T 3hts_B           84 GSMLSNNDSRWEFENE   99 (102)
T ss_dssp             -----CCSCCEEEEEC
T ss_pred             CcccCCCcCCeEecCC
Confidence                   357999874

>1hks_A Heat-shock transcription factor; transcription regulation; NMR {Drosophila melanogaster} SCOP: a.4.5.22 PDB: 1hkt_A

Probab=100.00  E-value=2.5e-36  Score=199.42  Aligned_cols=80  Identities=39%  Similarity=0.654  Sum_probs=74.8

Q ss_pred             CCCCcHHHHHHHhccCCCCCceeEEecCCCeEEEeCchhhHHhhcccccCCcCchhhhhccccCCceEecc---------
Q 034429           15 GGPAPFLIKTYDMVDDSSTDEIVSWSDNKNSFVVWNPPEFARLLLPTYFKHNNFSSFIRQLNTYVQIIINK---------   85 (95)
Q Consensus        15 ~~~~~F~~kL~~ml~~~~~~~iI~W~~~G~sfiI~d~~~f~~~vLp~~F~~~~~~SF~RqLn~YGF~kv~~---------   85 (95)
                      .++++|+.|||+||+||++++||+|+++|++|+|+|+++|+++|||+||+|+||+||+||||+|||+|+..         
T Consensus         2 ~~~p~F~~KL~~mv~d~~~~~iI~W~~~G~sFvI~d~~~F~~~vLp~yFkh~n~~SFvRQLN~YGF~Kv~~~~~~~~~~~   81 (106)
T 1hks_A            2 SGVPAFLAKLWRLVDDADTNRLICWTKDGQSFVIQNQAQFAKELLPLNYKHNNMASFIRQLNMYGFHKITSIDNGGLRFD   81 (106)
T ss_dssp             TTCCTTHHHHHHHHSSSTTTTTSEESTTTSCEECSCCSTTTTTTSTTTTSCCCHHHHHHHHHHHCCCCSSCSSSCCSSCT
T ss_pred             CCcCcHHHHHHHHhcCCCCCCEEEEeCCCCEEEECCHHHHHHHHhHHhcCCCcHHHHHHhhhcCCCeEEecccccCccCC
Confidence            46789999999999999999999999999999999999999999999999999999999999999999975         


Q ss_pred             CCCCccCCC
Q 034429           86 SFLWNHDNA   94 (95)
Q Consensus        86 ~~~~~~~~~   94 (95)
                      ...|||.|.
T Consensus        82 ~~~~ef~h~   90 (106)
T 1hks_A           82 RDEIEFSHP   90 (106)
T ss_dssp             TSTTEECCT
T ss_pred             CCceEEECc
Confidence            246898885

>2ldu_A Heat shock factor protein 1; structural genomics, northeast structural genomics consortiu DNA-binding, PSI-biology, protein structure initiative; NMR {Homo sapiens}

Probab=100.00  E-value=2.9e-35  Score=199.64  Aligned_cols=83  Identities=36%  Similarity=0.585  Sum_probs=76.7

Q ss_pred             CCCCCCCcHHHHHHHhccCCCCCceeEEecCCCeEEEeCchhhHHhhcccccCCcCchhhhhccccCCceEecc------
Q 034429           12 GLGGGPAPFLIKTYDMVDDSSTDEIVSWSDNKNSFVVWNPPEFARLLLPTYFKHNNFSSFIRQLNTYVQIIINK------   85 (95)
Q Consensus        12 ~~~~~~~~F~~kL~~ml~~~~~~~iI~W~~~G~sfiI~d~~~f~~~vLp~~F~~~~~~SF~RqLn~YGF~kv~~------   85 (95)
                      ......++|+.|||+||+||++++||+|+++|++|+|+|+++|+++|||+||+|+||+||+||||+|||+|+..      
T Consensus        12 ~~~~~~~~F~~KL~~ml~d~~~~~iI~W~~~G~sFvV~d~~~F~~~vLp~yFkh~nfsSFvRQLN~YGF~Kv~~~~~~~~   91 (125)
T 2ldu_A           12 AGPSNVPAFLTKLWTLVSDPDTDALICWSPSGNSFHVFDQGQFAKEVLPKYFKHNNMASFVRQLNMYGFRKVVHIEQGGL   91 (125)
T ss_dssp             CSSCCCCHHHHHHHHHHHCTTTTTTEEECTTSSEEEECCHHHHHHHHHHHHSSCCCHHHHHHHHHHTTCEEEECSCCSSS
T ss_pred             ccCCCCCcHHHHHHHHhhCCCCCCEEEEcCCCCEEEEeCHHHHHHHHhHHhcCCCcHHHHHHHhcccCceEEeecccccc
Confidence            35677899999999999999999999999999999999999999999999999999999999999999999963      


Q ss_pred             ----CCCCccCCC
Q 034429           86 ----SFLWNHDNA   94 (95)
Q Consensus        86 ----~~~~~~~~~   94 (95)
                          ...|||.|.
T Consensus        92 ~~~~~~~~eF~H~  104 (125)
T 2ldu_A           92 VKPERDDTEFQHP  104 (125)
T ss_dssp             SSCSSCCEEEECT
T ss_pred             ccCCCCccEEECc
Confidence                246888885

>4avp_A ETS translocation variant 1; transcription, transcriptional activation and repression, DN binding protein, E twenty-SIX, erwing sarcoma; 1.82A {Homo sapiens} PDB: 4b06_A

Probab=96.70  E-value=0.0013  Score=43.09  Aligned_cols=79  Identities=18%  Similarity=0.283  Sum_probs=55.2

Q ss_pred             CCCCCCcHHHHHHHhccCCCCCceeEEecCCCeEEEeCchhhHHhhccc-ccCCcCchhhhhccccC---Cc-eEeccC-
Q 034429           13 LGGGPAPFLIKTYDMVDDSSTDEIVSWSDNKNSFVVWNPPEFARLLLPT-YFKHNNFSSFIRQLNTY---VQ-IIINKS-   86 (95)
Q Consensus        13 ~~~~~~~F~~kL~~ml~~~~~~~iI~W~~~G~sfiI~d~~~f~~~vLp~-~F~~~~~~SF~RqLn~Y---GF-~kv~~~-   86 (95)
                      .+.+.....+=|.++|+|+++.++|+|.+.+..|.+.|+++.++.=-.+ -=..-+|..+.|-|.+|   |. +||... 
T Consensus         7 ~~~g~i~LwqFL~~LL~d~~~~~~I~W~~~~~~Fkl~dp~~VA~lWG~rKnkp~M~YeKlSRaLRyYY~kgii~Kv~G~r   86 (106)
T 4avp_A            7 QRRGSLQLWQFLVALLDDPSNSHFIAWTGRGMEFKLIEPEEVARRWGIQKNRPAMNYDKLSRSLRYYYEKGIMQKVAGER   86 (106)
T ss_dssp             ----CCCHHHHHHHHHHCGGGTTTEEECSSTTEEEESSHHHHHHHHHHHTTCTTCCHHHHHHHHHHHHHHTSEEECTTCS
T ss_pred             CCCCcEeHHHHHHHHHcCccCCCCCcccCCCceEEecCHHHHHHHHHhccCCCCcCHHHHHHHHHHHHhcCeEEecCCCe
Confidence            4455567778888999999999999999988899999998887642221 11456889999999887   43 355443 


Q ss_pred             CCCcc
Q 034429           87 FLWNH   91 (95)
Q Consensus        87 ~~~~~   91 (95)
                      .++.|
T Consensus        87 ~vYkF   91 (106)
T 4avp_A           87 YVYKF   91 (106)
T ss_dssp             SEEEE
T ss_pred             EEEEe
Confidence            24554

>1wwx_A E74-like factor 5 ESE-2B; DNA binding, transcriptional activation and repression, structural genomics; NMR {Homo sapiens} SCOP: a.4.5.21

Probab=96.68  E-value=0.0027  Score=41.59  Aligned_cols=68  Identities=16%  Similarity=0.250  Sum_probs=49.9

Q ss_pred             CCCCCCCcHHHHHHHhccCCC-CCceeEEec-CCCeEEEeCchhhHHhhccc-ccCCcCchhhhhccccCC
Q 034429           12 GLGGGPAPFLIKTYDMVDDSS-TDEIVSWSD-NKNSFVVWNPPEFARLLLPT-YFKHNNFSSFIRQLNTYV   79 (95)
Q Consensus        12 ~~~~~~~~F~~kL~~ml~~~~-~~~iI~W~~-~G~sfiI~d~~~f~~~vLp~-~F~~~~~~SF~RqLn~YG   79 (95)
                      +++++.....+=|.++|.||+ +.++|+|.. +...|.+.|+++.++.=-.+ -=..-+|..+-|-|.+|-
T Consensus         3 sg~~g~i~LwqFL~eLL~d~~~~~~~I~W~~~~~g~Fkl~d~e~VArlWG~rKnkp~MnYeKlSRaLRyYY   73 (107)
T 1wwx_A            3 SGSSGSSHLWEFVRDLLLSPEENCGILEWEDREQGIFRVVKSEALAKMWGQRKKNDRMTYEKLSRALRYYY   73 (107)
T ss_dssp             CCCCSSCCHHHHHHHHHHCTTTCCSCCEEEETTTTEEECSCHHHHHHHHHHHHTCTTCCHHHHHHHHHHHH
T ss_pred             CCCCCcEEHHHHHHHHHcCcccCCCcEEeecCCCCEEEecCHHHHHHHHHhcCCCCCcCHHHHHHHHHHHH
Confidence            345667778888999999885 568999987 46789999998887742221 113468888888888773

>2dao_A Transcription factor ETV6; ETS domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=96.66  E-value=0.0018  Score=43.08  Aligned_cols=67  Identities=21%  Similarity=0.374  Sum_probs=51.0

Q ss_pred             CCCCCCCcHHHHHHHhccCCCCCceeEEec-CCCeEEEeCchhhHHhhccc-ccCCcCchhhhhccccC
Q 034429           12 GLGGGPAPFLIKTYDMVDDSSTDEIVSWSD-NKNSFVVWNPPEFARLLLPT-YFKHNNFSSFIRQLNTY   78 (95)
Q Consensus        12 ~~~~~~~~F~~kL~~ml~~~~~~~iI~W~~-~G~sfiI~d~~~f~~~vLp~-~F~~~~~~SF~RqLn~Y   78 (95)
                      ++..+....-+=|.++|+|+.+.++|+|.. ++..|.+.|+++.++.=-.+ -=..-+|..+-|-|.+|
T Consensus         3 ~~~~g~~~LwqFLleLL~d~~~~~~I~W~~~~~g~Fklvdp~~VArlWG~rKnkp~MnYeKLSRaLRyY   71 (118)
T 2dao_A            3 SGSSGCRLLWDYVYQLLSDSRYENFIRWEDKESKIFRIVDPNGLARLWGNHKNRTNMTYEKMSRALRHY   71 (118)
T ss_dssp             CCCCCCCCHHHHHHHHHHCGGGTTTEEEEEGGGTEEEESCHHHHHHHHHHHTTCSSCCHHHHHHHHHHH
T ss_pred             CccCcchHHHHHHHHHhCCcccCCceEeeCCCCCeEEEeCHHHHHHHHHhccCCCCcCHHHHHHHHHHH
Confidence            344556777888999999999999999987 55689999998877642222 11336888888999887

>1fli_A FLI-1; transcription/DNA; NMR {Homo sapiens} SCOP: a.4.5.21

Probab=96.64  E-value=0.0012  Score=42.63  Aligned_cols=63  Identities=19%  Similarity=0.327  Sum_probs=47.4

Q ss_pred             CCcHHHHHHHhccCCCCCceeEEecCCCeEEEeCchhhHHhhccc-ccCCcCchhhhhccccCC
Q 034429           17 PAPFLIKTYDMVDDSSTDEIVSWSDNKNSFVVWNPPEFARLLLPT-YFKHNNFSSFIRQLNTYV   79 (95)
Q Consensus        17 ~~~F~~kL~~ml~~~~~~~iI~W~~~G~sfiI~d~~~f~~~vLp~-~F~~~~~~SF~RqLn~YG   79 (95)
                      ....-+=|.++|+|+++.++|+|..++..|.+.|+++.++.=-.+ -=..-+|..+-|-|.+|-
T Consensus         5 ~~~LwqFL~~LL~d~~~~~~I~W~~~~g~Fklvd~e~VArlWG~rK~kp~MnYeklSRaLRyYY   68 (98)
T 1fli_A            5 QIQLWQFLLELLSDSANASCITWEGTNGEFKMTDPDEVARRWGERKSKPNMNYDKLSRALRYYY   68 (98)
T ss_dssp             SCCSHHHHHHHHHTCSSCSSEECTTSSSSCEECCHHHHHHHHHHHTCCTTCSSHHHHHHHHHHH
T ss_pred             ceeHHHHHHHHhcCcccCCCeEEeCCCCEEEEcCHHHHHHHHHhccCCCCcCHHHHHHHHHHHH
Confidence            345566677888999999999999988899999998888742221 113467888888888764

>2ypr_A Protein FEV; transcription; 2.64A {Homo sapiens} PDB: 1fli_A

Probab=96.50  E-value=0.002  Score=41.83  Aligned_cols=76  Identities=16%  Similarity=0.305  Sum_probs=54.0

Q ss_pred             CCCcHHHHHHHhccCCCCCceeEEecCCCeEEEeCchhhHHhhccc-ccCCcCchhhhhccccCC---c-eEeccC-CCC
Q 034429           16 GPAPFLIKTYDMVDDSSTDEIVSWSDNKNSFVVWNPPEFARLLLPT-YFKHNNFSSFIRQLNTYV---Q-IIINKS-FLW   89 (95)
Q Consensus        16 ~~~~F~~kL~~ml~~~~~~~iI~W~~~G~sfiI~d~~~f~~~vLp~-~F~~~~~~SF~RqLn~YG---F-~kv~~~-~~~   89 (95)
                      +.....+=|.++|+|+++.++|+|+..+..|.+.|+++.++.=-.+ -=..-+|..+.|-|.+|-   . +||... .++
T Consensus         6 g~i~LwqFLl~LL~d~~~~~~I~W~~~~g~Fkl~dp~~VArlWG~rKnkp~MnYeKlSRaLRyYY~k~ii~Kv~Gkr~vY   85 (102)
T 2ypr_A            6 GQIQLWQFLLELLADRANAGCIAWEGGHGEFKLTDPDEVARRWGERKSKPNMNYDKLSRALRYYYDKNIMSKVHGKRYAY   85 (102)
T ss_dssp             SSCCHHHHHHHHHTCGGGTTTCEECSSTTEEECSSHHHHHHHHHHHTTCTTCCHHHHHHHHTHHHHTTSEEECSSCSSEE
T ss_pred             CcEeHHHHHHHHhcCCCCCCcccccCCCceEEecChHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCcEEecCCCeEEE
Confidence            3455677788999999999999999888999999998887642211 114568899999988873   3 355533 344


Q ss_pred             cc
Q 034429           90 NH   91 (95)
Q Consensus        90 ~~   91 (95)
                      .|
T Consensus        86 kF   87 (102)
T 2ypr_A           86 RF   87 (102)
T ss_dssp             EE
T ss_pred             Ee
Confidence            44

>1bc8_C SAP-1, protein (SAP-1 ETS domain); DNA-binding domain, winged helix-turn-helix, DNA-binding specificity, transcription/DNA complex; HET: DNA; 1.93A {Homo sapiens} SCOP: a.4.5.21 PDB: 1bc7_C* 1k6o_A 1dux_C*

Probab=96.44  E-value=0.002  Score=41.29  Aligned_cols=63  Identities=17%  Similarity=0.324  Sum_probs=48.6

Q ss_pred             CCcHHHHHHHhccCCCCCceeEEecCCCeEEEeCchhhHHhhccc-ccCCcCchhhhhccccCC
Q 034429           17 PAPFLIKTYDMVDDSSTDEIVSWSDNKNSFVVWNPPEFARLLLPT-YFKHNNFSSFIRQLNTYV   79 (95)
Q Consensus        17 ~~~F~~kL~~ml~~~~~~~iI~W~~~G~sfiI~d~~~f~~~vLp~-~F~~~~~~SF~RqLn~YG   79 (95)
                      ....-+=|.++|+|+++.++|+|...+..|.+.|+++.++.=-.+ -=..-+|....|-|.+|-
T Consensus         4 ~i~Lw~FL~~LL~d~~~~~~I~W~~~~g~Fkl~d~~~VArlWG~rKnk~~MnYeklSRaLRyYY   67 (93)
T 1bc8_C            4 AITLWQFLLQLLQKPQNKHMICWTSNDGQFKLLQAEEVARLWGIRKNKPNMNYDKLSRALRYYY   67 (93)
T ss_dssp             CCCHHHHHHHHTTCGGGTTTSEECSSSSEEECTTHHHHHHHHHHHHTCTTCCHHHHHHHHHHHH
T ss_pred             cccHHHHHHHHhcCcccCCceEEeCCCCEEEecCHHHHHHHHHhcCCCCCcCHHHHHHHHHHHH
Confidence            455667788999999999999999877799999998887742221 114468888999988873

>1awc_A Protein (GA binding protein alpha); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: a.4.5.21

Probab=96.43  E-value=0.0017  Score=42.77  Aligned_cols=59  Identities=17%  Similarity=0.293  Sum_probs=45.6

Q ss_pred             HHHHHhccCCCCCceeEEecCCCeEEEeCchhhHHhhccc-ccCCcCchhhhhccccCCc
Q 034429           22 IKTYDMVDDSSTDEIVSWSDNKNSFVVWNPPEFARLLLPT-YFKHNNFSSFIRQLNTYVQ   80 (95)
Q Consensus        22 ~kL~~ml~~~~~~~iI~W~~~G~sfiI~d~~~f~~~vLp~-~F~~~~~~SF~RqLn~YGF   80 (95)
                      +=|.++|+|+++.++|+|...+..|.+.|+++.++.=-.+ -=..-+|....|-|.+|-=
T Consensus         5 qFLleLL~d~~~~~~I~W~~~~geFkl~d~e~VArlWG~rKnkp~MnYeKlSRaLRyYY~   64 (110)
T 1awc_A            5 QFLLELLTDKDARDCISWVGDEGEFKLNQPELVAQKWGQRKNKPTMNYEKLSRALRYYYD   64 (110)
T ss_dssp             HHHHHHHTCTTTTTTSEECSSSSEEECSSHHHHHHHHHHHHTCTTCCHHHHHHHHHGGGG
T ss_pred             HHHHHHhcCcccCCceEEeCCCCEEEecCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHh
Confidence            4578899999999999999988899999998887643322 1133578889999988743

>1gvj_A C-ETS-1 protein, P54; transcription, autoinhibition, ETS domain; 1.53A {Homo sapiens} SCOP: a.4.5.21 PDB: 1md0_A 1r36_A 1k78_B 1k79_A* 1k7a_A* 2stt_A* 2stw_A*

Probab=96.16  E-value=0.0034  Score=43.15  Aligned_cols=68  Identities=24%  Similarity=0.390  Sum_probs=52.9

Q ss_pred             CCCCCcHHHHHHHhccCCCCCceeEEecCCCeEEEeCchhhHHhhccc-ccCCcCchhhhhccccCCce
Q 034429           14 GGGPAPFLIKTYDMVDDSSTDEIVSWSDNKNSFVVWNPPEFARLLLPT-YFKHNNFSSFIRQLNTYVQI   81 (95)
Q Consensus        14 ~~~~~~F~~kL~~ml~~~~~~~iI~W~~~G~sfiI~d~~~f~~~vLp~-~F~~~~~~SF~RqLn~YGF~   81 (95)
                      +++....-+=|.++|+|+...++|+|...+..|.+.|+++.++.=-.+ -=..-+|..+.|-|.+|-=+
T Consensus        36 ~sg~i~LwqFLleLL~d~~~~~~I~Wt~~~~eFklvdpe~VArlWG~rKnkp~MnYeKLSRaLRyYY~k  104 (146)
T 1gvj_A           36 GSGPIQLWQFLLELLTDKSCQSFISWTGDGWEFKLSDPDEVARRWGKRKNKPKMNYEKLSRGLRYYYDK  104 (146)
T ss_dssp             TCCSCCHHHHHHHHHTCGGGTTTSEECSSTTEEECSSHHHHHHHHHHHHTCTTCCHHHHHHHHHHHHHT
T ss_pred             CCCceeHHHHHHHHhcCcccCCceEeeCCCCEEEeCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHhc
Confidence            446778888899999999999999999999999999999888743222 11335788888999887433

>2nny_A C-ETS-1 protein, P54; protein-DNA complex, transcription/DNA complex; 2.58A {Homo sapiens} PDB: 3ri4_A 3mfk_A 1mdm_B

Probab=96.14  E-value=0.004  Score=43.75  Aligned_cols=68  Identities=24%  Similarity=0.400  Sum_probs=53.0

Q ss_pred             CCCCCcHHHHHHHhccCCCCCceeEEecCCCeEEEeCchhhHHhhccc-ccCCcCchhhhhccccCCce
Q 034429           14 GGGPAPFLIKTYDMVDDSSTDEIVSWSDNKNSFVVWNPPEFARLLLPT-YFKHNNFSSFIRQLNTYVQI   81 (95)
Q Consensus        14 ~~~~~~F~~kL~~ml~~~~~~~iI~W~~~G~sfiI~d~~~f~~~vLp~-~F~~~~~~SF~RqLn~YGF~   81 (95)
                      +++.....+=|.++|+|+...++|+|...+..|.+.|+++.++.=-.+ -=..-+|..+-|-|.+|-=+
T Consensus        61 ~sg~i~LwqFLleLL~d~~~~~~I~Wt~~~~eFklvdpe~VArlWG~rKnkp~MnYeKLSRaLRyYY~k  129 (171)
T 2nny_A           61 GSGPIQLWQFLLELLTDKSSQSFISWTGDGWEFKLSDPDEVARRWGKRKNKPKMNYEKLSRGLRYYYDK  129 (171)
T ss_dssp             TCSSCCHHHHHHHHHTCTGGGGTCEECSSTTEEECSSHHHHHHHHHHHHTCTTCCHHHHHHHHHGGGTT
T ss_pred             CCCceeHHHHHHHHhcCcccCCceEeeCCCCEEEeCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHhc
Confidence            446677888899999999999999999999999999999888743222 11335788888999887544

>1yo5_C SAM pointed domain containing ETS transcription factor; protein-DNA complex, double helix, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.4.5.21

Probab=95.99  E-value=0.0038  Score=40.19  Aligned_cols=68  Identities=16%  Similarity=0.274  Sum_probs=49.7

Q ss_pred             CCCCCcHHHHHHHhccCCC-CCceeEEec-CCCeEEEeCchhhHHhhccc-ccCCcCchhhhhccccCCce
Q 034429           14 GGGPAPFLIKTYDMVDDSS-TDEIVSWSD-NKNSFVVWNPPEFARLLLPT-YFKHNNFSSFIRQLNTYVQI   81 (95)
Q Consensus        14 ~~~~~~F~~kL~~ml~~~~-~~~iI~W~~-~G~sfiI~d~~~f~~~vLp~-~F~~~~~~SF~RqLn~YGF~   81 (95)
                      +++....-+=|.++|+||+ +.++|+|.+ +...|.+.|+++.++.=-.+ -=..-+|..+.|-|.+|-=+
T Consensus         7 ~~~~i~LwqFL~eLL~d~~~~~~~I~W~~~~~g~Fkl~d~~~VArlWG~rKnkp~MnYeklSRaLRyYY~~   77 (97)
T 1yo5_C            7 GSQPIHLWQFLKELLLKPHSYGRFIRWLNKEKGIFKIEDSAQVARLWGIRKNRPAMNYDKLSRSIRQYYKK   77 (97)
T ss_dssp             --CCCCHHHHHHHHHHCHHHHTTTEEEEETTTTEEEESCHHHHHHHHHHHHTCTTCCHHHHHHHHHHTTTT
T ss_pred             CCCeeEHHHHHHHHhcCcccCCCceEeecCCCCEEEecCHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHhc
Confidence            3356677888899999985 589999985 57789999998887742221 11346889999999888643

>3jtg_A ETS-related transcription factor ELF-3; ELF3, protein-DNA complex, type II TGF-beta receptor, activa alternative splicing, cytoplasm; HET: DNA; 2.20A {Mus musculus} SCOP: a.4.5.21

Probab=95.78  E-value=0.0079  Score=39.06  Aligned_cols=60  Identities=12%  Similarity=0.244  Sum_probs=43.8

Q ss_pred             cHHHHHHHhccCCC-CCceeEEecC-CCeEEEeCchhhHHhhccc-ccCCcCchhhhhccccC
Q 034429           19 PFLIKTYDMVDDSS-TDEIVSWSDN-KNSFVVWNPPEFARLLLPT-YFKHNNFSSFIRQLNTY   78 (95)
Q Consensus        19 ~F~~kL~~ml~~~~-~~~iI~W~~~-G~sfiI~d~~~f~~~vLp~-~F~~~~~~SF~RqLn~Y   78 (95)
                      ...+=|.++|.|++ +.++|+|.+. ...|.+.|+++.++.=-.+ -=..-+|..+.|-|.+|
T Consensus         6 ~LwqFL~~LL~d~~~~~~~I~W~~~~~g~Fkl~dp~~VArlWG~rKnkp~MnYeKlSRaLRyY   68 (103)
T 3jtg_A            6 HLWEFIRDILIHPELNEGLMKWENRHEGVFKFLRSEAVAQLWGQKKKNSNMTYEKLSRAMRYY   68 (103)
T ss_dssp             SHHHHHHHHHTCGGGCSSCEEEEETTTTEEEESSHHHHHHHHHHHTTCTTCCHHHHHHHHHHH
T ss_pred             cHHHHHHHHHcCcccCCCccccccCCCceEEecCHHHHHHHHHhccCCCCcCHHHHHHHHHHH
Confidence            45566778899987 6789999984 4589999998887642111 11456888999888877

>1hbx_G ETS-domain protein ELK-4; gene regulation, transcription complex; 3.15A {Homo sapiens} SCOP: a.4.5.21

Probab=95.18  E-value=0.0087  Score=41.53  Aligned_cols=63  Identities=17%  Similarity=0.324  Sum_probs=48.3

Q ss_pred             CCcHHHHHHHhccCCCCCceeEEecCCCeEEEeCchhhHHhhccc-ccCCcCchhhhhccccCC
Q 034429           17 PAPFLIKTYDMVDDSSTDEIVSWSDNKNSFVVWNPPEFARLLLPT-YFKHNNFSSFIRQLNTYV   79 (95)
Q Consensus        17 ~~~F~~kL~~ml~~~~~~~iI~W~~~G~sfiI~d~~~f~~~vLp~-~F~~~~~~SF~RqLn~YG   79 (95)
                      .....+=|.++|.|+++.++|+|...+..|.+.|+++.++.=-.+ -=..-+|..+-|-|.+|-
T Consensus         5 ~i~LWqFLleLL~d~~~~~~I~Wt~~~geFklvdpe~VArLWG~rKnkp~MnYeKLSRALRyYY   68 (157)
T 1hbx_G            5 AITLWQFLLQLLQKPQNKHMICWTSNDGQFKLLQAEEVARLWGIRKNKPNMNYDKLSRALRYYY   68 (157)
T ss_dssp             CCCHHHHTTTSSSCGGGTTTEEECSSSSCEEETTHHHHHHHHHHGGGCTTCCHHHHHHHHHHHH
T ss_pred             cccHHHHHHHHhcCcccCCceEEeCCCCEEEecCcHHHHHHHHhccCCCCcCHHHHHHHHHHHH
Confidence            445667788999999999999999877899999998888753221 113467888888888763

>1pue_E Protein (transcription factor PU.1 (TF PU.1)); complex (transcription regulating/DNA), oncogene, transforming protein, DNA- binding, activator; HET: DNA; 2.10A {Mus musculus} SCOP: a.4.5.21

Probab=94.64  E-value=0.024  Score=35.88  Aligned_cols=59  Identities=15%  Similarity=0.227  Sum_probs=42.3

Q ss_pred             HHHHHHhccCCCCCceeEEecCC-CeEEEe--CchhhHHhhcccc--cCCcCchhhhhccccCC
Q 034429           21 LIKTYDMVDDSSTDEIVSWSDNK-NSFVVW--NPPEFARLLLPTY--FKHNNFSSFIRQLNTYV   79 (95)
Q Consensus        21 ~~kL~~ml~~~~~~~iI~W~~~G-~sfiI~--d~~~f~~~vLp~~--F~~~~~~SF~RqLn~YG   79 (95)
                      -+=|.++|+|+++.++|+|.+.+ ..|.+.  |+++.++.=-.+=  =..-+|..+.|-|.+|-
T Consensus         5 wqFL~~LL~d~~~~~~I~W~~~~~g~Fk~~~~~~e~VArlWG~rK~Nk~~MnYeKlSRaLRyYY   68 (89)
T 1pue_E            5 YQFLLDLLRSGDMKDSIWWVDKDKGTFQFSSKHKEALAHRWGIQKGNRKKMTYEKMARALRNYG   68 (89)
T ss_dssp             HHHHHHHHHHTCCTTTEEEEETTTTEEEECTTTHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHH
T ss_pred             HHHHHHHhcCcccCCceEeecCCCcEEEEecCChHHHHHHhhcccCCCCCcCHHHHHHHHHHHH
Confidence            45578899999999999998744 567764  6777776422221  12568999999998873

>2lf8_A Transcription factor ETV6; auto-inhibition; NMR {Mus musculus}

Probab=92.30  E-value=0.016  Score=38.97  Aligned_cols=63  Identities=21%  Similarity=0.415  Sum_probs=43.4

Q ss_pred             cHHHHHHHhccCCCCCceeEEecC-CCeEEEeCchhhHHhhccc-ccCCcCchhhhhccccCCce
Q 034429           19 PFLIKTYDMVDDSSTDEIVSWSDN-KNSFVVWNPPEFARLLLPT-YFKHNNFSSFIRQLNTYVQI   81 (95)
Q Consensus        19 ~F~~kL~~ml~~~~~~~iI~W~~~-G~sfiI~d~~~f~~~vLp~-~F~~~~~~SF~RqLn~YGF~   81 (95)
                      ..-+=|.++|+|+++.++|+|... +..|.+.|+++.++.=-.+ -=..-+|..+-|-|.+|-=+
T Consensus         6 ~LWqFLleLL~d~~~~~~I~Wt~k~~geFklvdpe~VArlWG~rKnkp~MnYeKLSRALRyYY~k   70 (128)
T 2lf8_A            6 LLWDYVYQLLSDSRYENFIRWEDKESKIFRIVDPNGLARLWGNHKNRTNMTYEKMSRALRHYYKL   70 (128)
Confidence            344557788999999999999874 4589999998766532221 11225677788888777543

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	95
d1hksa_	106	a.4.5.22 (A:) Heat-shock transcription factor {Dro	5e-29
d2htsa_	92	a.4.5.22 (A:) Heat-shock transcription factor {Mil	1e-28

>d1hksa_ a.4.5.22 (A:) Heat-shock transcription factor {Drosophila melanogaster [TaxId: 7227]} Length = 106

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: Heat-shock transcription factor
domain: Heat-shock transcription factor
species: Drosophila melanogaster [TaxId: 7227]

 Score = 98.1 bits (244), Expect = 5e-29
 Identities = 31/65 (47%), Positives = 44/65 (67%)

Query: 14 GGGPAPFLIKTYDMVDDSSTDEIVSWSDNKNSFVVWNPPEFARLLLPTYFKHNNFSSFIR 73
          G G   FL K + +VDD+ T+ ++ W+ +  SFV+ N  +FA+ LLP  +KHNN +SFIR
Sbjct: 1  GSGVPAFLAKLWRLVDDADTNRLICWTKDGQSFVIQNQAQFAKELLPLNYKHNNMASFIR 60

Query: 74 QLNTY 78
          QLN Y
Sbjct: 61 QLNMY 65

>d2htsa_ a.4.5.22 (A:) Heat-shock transcription factor {Milk yeast (Kluyveromyces lactis) [TaxId: 28985]} Length = 92

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: Heat-shock transcription factor
domain: Heat-shock transcription factor
species: Milk yeast (Kluyveromyces lactis) [TaxId: 28985]

 Score = 96.9 bits (241), Expect = 1e-28
 Identities = 28/63 (44%), Positives = 40/63 (63%)

Query: 16 GPAPFLIKTYDMVDDSSTDEIVSWSDNKNSFVVWNPPEFARLLLPTYFKHNNFSSFIRQL 75
              F+ K + MV+D S ++ + WS +  S VV N   F + +LP YFKH+NF+SF+RQL
Sbjct: 1  ARPAFVNKLWSMVNDKSNEKFIHWSTSGESIVVPNRERFVQEVLPKYFKHSNFASFVRQL 60

Query: 76 NTY 78
          N Y
Sbjct: 61 NMY 63

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	95
d2htsa_	92	Heat-shock transcription factor {Milk yeast (Kluyv	100.0
d1hksa_	106	Heat-shock transcription factor {Drosophila melano	99.98
d1flia_	98	Fli-1 {Human (Homo sapiens) [TaxId: 9606]}	96.94
d1awca_	110	GA binding protein (GABP) alpha {Mouse (Mus muscul	96.86
d1duxc_	86	Elk-1 {Human (Homo sapiens) [TaxId: 9606]}	96.73
d1gvja_	142	ETS-1 transcription factor, residues 331-440 {Huma	96.4
d1hbxg_	155	Serum response factor accessory protein 1a, SAP-1	96.19
d1puee_	88	Transcription factor PU.1, residues 171-259 {Mouse	95.93
d1wwxa1	94	E74-like factor 5 ese-2b {Human (Homo sapiens) [Ta	95.44
d1yo5c1	88	Sam pointed domain containing ets transcription SP	95.2
d1pp7u_	114	39 kda initiator binding protein, IBP39, N-termina	90.74

>d2htsa_ a.4.5.22 (A:) Heat-shock transcription factor {Milk yeast (Kluyveromyces lactis) [TaxId: 28985]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: Heat-shock transcription factor
domain: Heat-shock transcription factor
species: Milk yeast (Kluyveromyces lactis) [TaxId: 28985]

Probab=100.00  E-value=1.9e-35  Score=190.01  Aligned_cols=77  Identities=39%  Similarity=0.704  Sum_probs=72.0

Q ss_pred             CCcHHHHHHHhccCCCCCceeEEecCCCeEEEeCchhhHHhhcccccCCcCchhhhhccccCCceEeccC----------
Q 034429           17 PAPFLIKTYDMVDDSSTDEIVSWSDNKNSFVVWNPPEFARLLLPTYFKHNNFSSFIRQLNTYVQIIINKS----------   86 (95)
Q Consensus        17 ~~~F~~kL~~ml~~~~~~~iI~W~~~G~sfiI~d~~~f~~~vLp~~F~~~~~~SF~RqLn~YGF~kv~~~----------   86 (95)
                      .|+|+.|||+||+|+++++||+|++||++|+|+|+++|+++|||+||+|++|+||+||||+|||+|+...          
T Consensus         2 ~P~F~~kL~~~l~~~~~~~iI~W~~~G~~f~I~d~~~f~~~vLp~~F~~~~~~SF~RQLn~yGF~kv~~~~~~~~~~~~~   81 (92)
T d2htsa_           2 RPAFVNKLWSMVNDKSNEKFIHWSTSGESIVVPNRERFVQEVLPKYFKHSNFASFVRQLNMYGWHKVQDVKSGSMLSNND   81 (92)
T ss_dssp             CCHHHHHHHHHHHCGGGTTTCEECTTSSSEEESCHHHHHHHTHHHHCTTCCHHHHHHHHHHTTEECCCCSCTTC----CC
T ss_pred             CCChHHHHHHHHcCcCCCCEEEEeCCCCEEEEeCHHHHHHHHHHHhcCCCCHHHHHHHHHhCCeEEeecCCCCCcccCCC
Confidence            5789999999999999999999999999999999999999999999999999999999999999998752          


Q ss_pred             CCCccCC
Q 034429           87 FLWNHDN   93 (95)
Q Consensus        87 ~~~~~~~   93 (95)
                      ..|||.|
T Consensus        82 ~~~eF~h   88 (92)
T d2htsa_          82 SRWEFEN   88 (92)
T ss_dssp             CCEEEEE
T ss_pred             CCEEEec
Confidence            4578776

>d1hksa_ a.4.5.22 (A:) Heat-shock transcription factor {Drosophila melanogaster [TaxId: 7227]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: Heat-shock transcription factor
domain: Heat-shock transcription factor
species: Drosophila melanogaster [TaxId: 7227]

Probab=99.98  E-value=3.3e-34  Score=187.43  Aligned_cols=72  Identities=44%  Similarity=0.787  Sum_probs=68.7

Q ss_pred             CCCCCcHHHHHHHhccCCCCCceeEEecCCCeEEEeCchhhHHhhcccccCCcCchhhhhccccCCceEecc
Q 034429           14 GGGPAPFLIKTYDMVDDSSTDEIVSWSDNKNSFVVWNPPEFARLLLPTYFKHNNFSSFIRQLNTYVQIIINK   85 (95)
Q Consensus        14 ~~~~~~F~~kL~~ml~~~~~~~iI~W~~~G~sfiI~d~~~f~~~vLp~~F~~~~~~SF~RqLn~YGF~kv~~   85 (95)
                      ++++|+|+.|||+||+|+++++||+|++||++|+|+|+++|+++|||+||+|++|+||+||||+|||+|+.+
T Consensus         1 g~~vp~F~~KL~~ml~~~~~~~iI~W~~~G~~fiI~d~~~f~~~vLp~~Fk~~~~~SF~RQLn~yGF~kv~~   72 (106)
T d1hksa_           1 GSGVPAFLAKLWRLVDDADTNRLICWTKDGQSFVIQNQAQFAKELLPLNYKHNNMASFIRQLNMYGFHKITS   72 (106)
T ss_dssp             CTTCCTTHHHHHHHHSSSTTTTTSEESTTTSCEECSCCSTTTTTTSTTTTSCCCHHHHHHHHHHHCCCCSSC
T ss_pred             CCCCCcHHHHHHHHHhCcCCCCEEEEcCCCCEEEEcCHHHHHHHHhhhhccccCHHHHHHHHHHCCCEEeec
Confidence            356788999999999999999999999999999999999999999999999999999999999999999865

>d1flia_ a.4.5.21 (A:) Fli-1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: ets domain
domain: Fli-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.94  E-value=0.00024  Score=44.42  Aligned_cols=63  Identities=19%  Similarity=0.327  Sum_probs=46.5

Q ss_pred             CCcHHHHHHHhccCCCCCceeEEecCCCeEEEeCchhhHHhhccc-ccCCcCchhhhhccccCC
Q 034429           17 PAPFLIKTYDMVDDSSTDEIVSWSDNKNSFVVWNPPEFARLLLPT-YFKHNNFSSFIRQLNTYV   79 (95)
Q Consensus        17 ~~~F~~kL~~ml~~~~~~~iI~W~~~G~sfiI~d~~~f~~~vLp~-~F~~~~~~SF~RqLn~YG   79 (95)
                      ...--+=|.++|+|+++.++|+|+..+..|.+.|+++.++.=-.+ -=..-+|..+.|-|.+|-
T Consensus         5 ~~~Lw~FL~~LL~d~~~~~~I~W~~~~geFkl~~~~~VA~lWG~~Knk~~M~YeklSRaLRyYY   68 (98)
T d1flia_           5 QIQLWQFLLELLSDSANASCITWEGTNGEFKMTDPDEVARRWGERKSKPNMNYDKLSRALRYYY   68 (98)
T ss_dssp             SCCSHHHHHHHHHTCSSCSSEECTTSSSSCEECCHHHHHHHHHHHTCCTTCSSHHHHHHHHHHH
T ss_pred             cccHHHHHHHHhcCcccCCceEEECCCCEEEeCCHHHHHHHHHHhhcCCCccHHHHHHHHHHHH
Confidence            345566678899999999999998877789999998887642221 112247888888887763

>d1awca_ a.4.5.21 (A:) GA binding protein (GABP) alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: ets domain
domain: GA binding protein (GABP) alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.86  E-value=0.00026  Score=45.08  Aligned_cols=58  Identities=17%  Similarity=0.293  Sum_probs=44.8

Q ss_pred             HHHHHhccCCCCCceeEEecCCCeEEEeCchhhHHhhccc-ccCCcCchhhhhccccCC
Q 034429           22 IKTYDMVDDSSTDEIVSWSDNKNSFVVWNPPEFARLLLPT-YFKHNNFSSFIRQLNTYV   79 (95)
Q Consensus        22 ~kL~~ml~~~~~~~iI~W~~~G~sfiI~d~~~f~~~vLp~-~F~~~~~~SF~RqLn~YG   79 (95)
                      +=|.++|+|+++.++|+|++++.-|.+.|+++.++.=-.+ -=..-+|..+.|-|.+|-
T Consensus         5 ~FL~~LL~d~~~~~~I~Wt~~~geFkl~d~e~VA~lWG~~Knk~~M~YeklSRaLRyYY   63 (110)
T d1awca_           5 QFLLELLTDKDARDCISWVGDEGEFKLNQPELVAQKWGQRKNKPTMNYEKLSRALRYYY   63 (110)
T ss_dssp             HHHHHHHTCTTTTTTSEECSSSSEEECSSHHHHHHHHHHHHTCTTCCHHHHHHHHHGGG
T ss_pred             HHHHHHHcCcccCCCcEEECCCCEEEeCCHHHHHHHHHHhhCCCcccHHHHHHHHHHHH
Confidence            4477899999999999999988899999999887642211 113468888888888874

>d1duxc_ a.4.5.21 (C:) Elk-1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: ets domain
domain: Elk-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.73  E-value=0.00027  Score=43.23  Aligned_cols=56  Identities=21%  Similarity=0.386  Sum_probs=42.0

Q ss_pred             HHHHhccCCCCCceeEEec-CCCeEEEeCchhhHHhhccc-ccCCcCchhhhhccccC
Q 034429           23 KTYDMVDDSSTDEIVSWSD-NKNSFVVWNPPEFARLLLPT-YFKHNNFSSFIRQLNTY   78 (95)
Q Consensus        23 kL~~ml~~~~~~~iI~W~~-~G~sfiI~d~~~f~~~vLp~-~F~~~~~~SF~RqLn~Y   78 (95)
                      =|.++|+|+++.++|+|++ ++..|.+.|+++.++.=-.+ -=..-+|..+-|-|.+|
T Consensus         6 FL~~LL~d~~~~~~I~Wt~k~~g~Fklv~~~~VA~lWG~~Knk~~MnYeklSRaLRyy   63 (86)
T d1duxc_           6 FLLQLLREQGNGHIISWTSRDGGEFKLVDAEEVARLWGLRKNKTNMNYDKLSRALRYY   63 (86)
T ss_dssp             HHHHHHHHCSSSSSCEEEETTTTEEECTTHHHHHHHHHHTTTCSCCCHHHHHHHHHHH
T ss_pred             HHHHHhcCCCCCCceEeccCCCCEEEecCHHHHHHHHHhccCCCCCCHHHHHHHHHHH
Confidence            3667888999999999998 68899999998888742211 11335788888888765

>d1gvja_ a.4.5.21 (A:) ETS-1 transcription factor, residues 331-440 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: ets domain
domain: ETS-1 transcription factor, residues 331-440
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.40  E-value=0.00098  Score=44.02  Aligned_cols=64  Identities=23%  Similarity=0.392  Sum_probs=48.3

Q ss_pred             CCCCcHHHHHHHhccCCCCCceeEEecCCCeEEEeCchhhHHhhccc-ccCCcCchhhhhccccC
Q 034429           15 GGPAPFLIKTYDMVDDSSTDEIVSWSDNKNSFVVWNPPEFARLLLPT-YFKHNNFSSFIRQLNTY   78 (95)
Q Consensus        15 ~~~~~F~~kL~~ml~~~~~~~iI~W~~~G~sfiI~d~~~f~~~vLp~-~F~~~~~~SF~RqLn~Y   78 (95)
                      ++....-+=|.++|+|+++.++|+|.+++..|.+.|+++.++.=-.+ -=..-+|..+.|-|.+|
T Consensus        37 ~g~i~LWqFLleLL~d~~~~~~I~Wt~~~~eFkl~d~e~VA~lWG~~Knk~~MnYeKmSRALRyY  101 (142)
T d1gvja_          37 SGPIQLWQFLLELLTDKSCQSFISWTGDGWEFKLSDPDEVARRWGKRKNKPKMNYEKLSRGLRYY  101 (142)
T ss_dssp             CCSCCHHHHHHHHHTCGGGTTTSEECSSTTEEECSSHHHHHHHHHHHHTCTTCCHHHHHHHHHHH
T ss_pred             CCeeeHHHHHHHHHcCCccCCccEEECCCCeEEeCCHHHHHHHHHhhcCCCCccHHHHhHHHHHH
Confidence            44556777788999999999999999988889999999987642211 11335788888888765

>d1hbxg_ a.4.5.21 (G:) Serum response factor accessory protein 1a, SAP-1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: ets domain
domain: Serum response factor accessory protein 1a, SAP-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.19  E-value=0.00055  Score=45.87  Aligned_cols=58  Identities=19%  Similarity=0.349  Sum_probs=44.3

Q ss_pred             HHHHHHhccCCCCCceeEEecCCCeEEEeCchhhHHhhccc-ccCCcCchhhhhccccC
Q 034429           21 LIKTYDMVDDSSTDEIVSWSDNKNSFVVWNPPEFARLLLPT-YFKHNNFSSFIRQLNTY   78 (95)
Q Consensus        21 ~~kL~~ml~~~~~~~iI~W~~~G~sfiI~d~~~f~~~vLp~-~F~~~~~~SF~RqLn~Y   78 (95)
                      -+=|.++|+|+++.++|+|...+.-|.+.|+++.++.=-.+ -=..-+|..+-|-|.+|
T Consensus         7 w~FL~~LL~d~~~~~~I~Wt~~~geFkl~~~~~VA~lWG~rKnk~~M~YeklSRaLRyY   65 (155)
T d1hbxg_           7 WQFLLQLLQKPQNKHMICWTSNDGQFKLLQAEEVARLWGIRKNKPNMNYDKLSRALRYY   65 (155)
T ss_dssp             HHHTTTSSSCGGGTTTEEECSSSSCEEETTHHHHHHHHHHGGGCTTCCHHHHHHHHHHH
T ss_pred             HHHHHHHHcCccCCCceEEECCCCEEEeCCHHHHHHHHHhhcCCCCccHHHHHHHHHHH
Confidence            34567889999999999999988899999999988752221 11336788888888775

>d1puee_ a.4.5.21 (E:) Transcription factor PU.1, residues 171-259 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: ets domain
domain: Transcription factor PU.1, residues 171-259
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.93  E-value=0.001  Score=40.71  Aligned_cols=57  Identities=16%  Similarity=0.261  Sum_probs=38.4

Q ss_pred             HHHHHhccCCCCCceeEEecCCC-eEEEe--CchhhHHhhccc--ccCCcCchhhhhccccC
Q 034429           22 IKTYDMVDDSSTDEIVSWSDNKN-SFVVW--NPPEFARLLLPT--YFKHNNFSSFIRQLNTY   78 (95)
Q Consensus        22 ~kL~~ml~~~~~~~iI~W~~~G~-sfiI~--d~~~f~~~vLp~--~F~~~~~~SF~RqLn~Y   78 (95)
                      +=|.++|+||++.++|+|.+.+. .|-+.  ++++.++.=--+  .=..=+|..+.|-|.+|
T Consensus         6 qFL~~LL~d~~~~~~I~Wt~~~~g~F~fv~~~~e~VA~lWG~~K~Nr~~MnYeklSRaLRyY   67 (88)
T d1puee_           6 QFLLDLLRSGDMKDSIWWVDKDKGTFQFSSKHKEALAHRWGIQKGNRKKMTYEKMARALRNY   67 (88)
T ss_dssp             HHHHHHHHHTCCTTTEEEEETTTTEEEECTTTHHHHHHHHHHHHTCSSCCCHHHHHHHHHHH
T ss_pred             HHHHHHHcCccCCCceEeeCCCCceEEEEeCCHHHHHHHHHhhcCCCCCCcHHHHHHHHHHH
Confidence            44778899999999999987664 45554  466666532111  11234889999988776

>d1wwxa1 a.4.5.21 (A:8-101) E74-like factor 5 ese-2b {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: ets domain
domain: E74-like factor 5 ese-2b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.44  E-value=0.0048  Score=38.01  Aligned_cols=57  Identities=18%  Similarity=0.276  Sum_probs=39.3

Q ss_pred             HHHHHhccCCC-CCceeEEec-CCCeEEEeCchhhHHhhcc-cccCCcCchhhhhccccC
Q 034429           22 IKTYDMVDDSS-TDEIVSWSD-NKNSFVVWNPPEFARLLLP-TYFKHNNFSSFIRQLNTY   78 (95)
Q Consensus        22 ~kL~~ml~~~~-~~~iI~W~~-~G~sfiI~d~~~f~~~vLp-~~F~~~~~~SF~RqLn~Y   78 (95)
                      +=|.++|.||+ +.++|+|.+ +..-|.+.|+++.++.=-- +-=..-+|..+-|-|.+|
T Consensus         6 qFL~~LL~d~~~~~~~I~Wt~k~~g~Fkl~d~~~VA~lWG~~K~~~~M~YeklSRaLRyY   65 (94)
T d1wwxa1           6 EFVRDLLLSPEENCGILEWEDREQGIFRVVKSEALAKMWGQRKKNDRMTYEKLSRALRYY   65 (94)
T ss_dssp             HHHHHHHHCTTTCCSCCEEEETTTTEEECSCHHHHHHHHHHHHTCTTCCHHHHHHHHHHH
T ss_pred             HHHHHHHcCCccCCCeEEEEcCCCcEEEEcCHHHHHHHHHhhcCCCCCcHHHHHHHHHHH
Confidence            34678888874 578999998 4457999999987764111 111235788888888766

>d1yo5c1 a.4.5.21 (C:247-334) Sam pointed domain containing ets transcription SPDEF {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: ets domain
domain: Sam pointed domain containing ets transcription SPDEF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.20  E-value=0.0031  Score=38.45  Aligned_cols=61  Identities=15%  Similarity=0.234  Sum_probs=43.6

Q ss_pred             HHHHHHhccCC-CCCceeEEecCCC-eEEEeCchhhHHhhccc-ccCCcCchhhhhccccCCce
Q 034429           21 LIKTYDMVDDS-STDEIVSWSDNKN-SFVVWNPPEFARLLLPT-YFKHNNFSSFIRQLNTYVQI   81 (95)
Q Consensus        21 ~~kL~~ml~~~-~~~~iI~W~~~G~-sfiI~d~~~f~~~vLp~-~F~~~~~~SF~RqLn~YGF~   81 (95)
                      -+=|.++|.|| .+.++|+|.+.+. -|.+.|+++.++.=-.+ -=..-+|..+.|-|.+|-=+
T Consensus         6 w~FL~~LL~d~~~~~~~I~Wt~~~~g~Fkl~~~~~VA~lWG~~Knk~~M~YeklSRALRyYY~~   69 (88)
T d1yo5c1           6 WQFLKELLLKPHSYGRFIRWLNKEKGIFKIEDSAQVARLWGIRKNRPAMNYDKLSRSIRQYYKK   69 (88)
T ss_dssp             HHHHHHHHHCHHHHTTTEEEEETTTTEEEESCHHHHHHHHHHHHTCTTCCHHHHHHHHHHTTTT
T ss_pred             HHHHHHHHcCccccCCCeEEECCCCceEEecCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhc
Confidence            34577888887 4689999987665 79999999987642211 11345889999999888643

>d1pp7u_ a.4.5.44 (U:) 39 kda initiator binding protein, IBP39, N-terminal domain {Trichomonas vaginalis [TaxId: 5722]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: 39 kda initiator binding protein, IBP39, N-terminal domain
domain: 39 kda initiator binding protein, IBP39, N-terminal domain
species: Trichomonas vaginalis [TaxId: 5722]

Probab=90.74  E-value=0.074  Score=33.44  Aligned_cols=65  Identities=11%  Similarity=0.169  Sum_probs=46.2

Q ss_pred             CCCCCcHHHHHHHhcc----CCCCC--ceeEEecCCCeEEEeCchhhHHhhcccccCCcCchhhhhccccCCceEeccC
Q 034429           14 GGGPAPFLIKTYDMVD----DSSTD--EIVSWSDNKNSFVVWNPPEFARLLLPTYFKHNNFSSFIRQLNTYVQIIINKS   86 (95)
Q Consensus        14 ~~~~~~F~~kL~~ml~----~~~~~--~iI~W~~~G~sfiI~d~~~f~~~vLp~~F~~~~~~SF~RqLn~YGF~kv~~~   86 (95)
                      +..-..|+.|||.+|.    +|...  --|.|.+|+. |.| +...|.+- |--     +-.|...-|..+||.++..+
T Consensus        24 ~~~~~rF~~KL~naL~~t~~~P~~~~~iGv~Wi~d~~-f~V-nk~~fa~l-Lgi-----K~ntlN~Nfr~~gF~q~~~d   94 (114)
T d1pp7u_          24 RDPNSRFPRKLHMLLTYLASNPQLEEEIGLSWISDTE-FKM-KKKNVALV-MGI-----KLNTLNVNLRDLAFEQLQHD   94 (114)
T ss_dssp             SSGGGSHHHHHHHHHHHHTTCHHHHHHHTEEESSSSC-EEE-CHHHHHHH-HTC-----CHHHHHHHHHHTTCEEEEEE
T ss_pred             CCccCCchHHHHHHHHHHHhChhhhhccceEEecCCE-EEE-ehHHHHHH-HCC-----ChhhhcCcccccCceeeecC
Confidence            3446889999999997    33221  2478999986 555 88888864 432     34677778888999988774