Citrus Sinensis ID: 034431

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-----
Protein Sequence
MPAHMQQHALRFTRSLVDDYYSESSAPKTSRPNPTHLARALKKEFDDAYGPAWHCVVGKSFGSFVTHSPAGFLYFSIDSLSVLLFKTEVQLVKES
Secondary Structure (PSIPRED)
ccHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHcccccccEEEEEEccccEEEEEccccEEEEEEccEEEEEEEccccccccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHHcccEEEEEEcEEEEEEEEEcccEEEEEEccEEEEEEEccccccccc
Coil and Loop (DISEMBL)
MPAHMQQHALRFTRSLVDdyysessapktsrpnpTHLARALKKEfddaygpawhcvvgksfgsfvthspagflYFSIDSLSVLLFKTEVQLVKES
Flexible Loop (DISEMBL)
MPAHMQQHALRFTRSLVDDYYSEssapktsrpnptHLARALKKEFDDAYGPAWHCVVGKSFGSFVTHSPAGFLYFSIDSLSVLLFKTEVQLVKES
Low Complexity Region (SEG)
MPAHMQQHALRFTRSLVDDYYSESSAPKTSRPNPTHLARALKKEFDDAYGPAWHCVVGKSFGSFVTHSPAGFLYFSIDSLSVLLFKTEVQLVKES
Disordered region (IsUnstruct)
****************************************LKKEFDDAYGPAWHCVVGKSFGSFVTHSPAGFLYFSIDSLSVLLFKTEVQL****
Disordered Region (DISOPRED)
MPAHMQQHALRFTRSLVDDYYSESSAPKTSRPNPTHLARALKKEFDDAYGPAWHCVVGKSFGSFVTHSPAGFLYFSIDSLSVLLFKTEVQLV***
Disordered Region (DISEMBL)
MPAHMQQHALRFTRSLVDD****************HLARALKKEFDDAYGPAWHCVVGKSFGSFVTHSPAGFLYFSIDSLSVLLFKTEVQLVKES
Disordered Region (DISPRO)
*P**MQQHALRFTRSLVDDYYSESSAPKTSRPNPTHLARALKKEFDDAYGPAWHCVVGKSFGSFVTHSPAGFLYFSIDSLSVLLFKTEVQ*****
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MPAHMQQHALRFTRSLVDDYYSESSAPKTSRPNPTHLARALKKEFDDAYGPAWHCVVGKSFGSFVTHSPAGFLYFSIDSLSVLLFKTEVQLVKES
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	95	2.2.26 [Sep-21-2011]
Q86A88	91	Dynein light chain, cytop	yes	no	0.789	0.824	0.465	4e-15
O02414	89	Dynein light chain LC6, f	N/A	no	0.8	0.853	0.390	4e-13
O94111	94	Dynein light chain, cytop	yes	no	0.810	0.819	0.386	8e-13
Q24117	89	Dynein light chain 1, cyt	yes	no	0.8	0.853	0.379	1e-12
Q78P75	89	Dynein light chain 2, cyt	yes	no	0.8	0.853	0.379	1e-12
Q9D0M5	89	Dynein light chain 2, cyt	yes	no	0.8	0.853	0.379	1e-12
Q96FJ2	89	Dynein light chain 2, cyt	yes	no	0.8	0.853	0.379	1e-12
Q3MHR3	89	Dynein light chain 2, cyt	yes	no	0.8	0.853	0.379	1e-12
P63170	89	Dynein light chain 1, cyt	no	no	0.8	0.853	0.367	1e-12
P63169	89	Dynein light chain 1, cyt	yes	no	0.8	0.853	0.367	1e-12

>sp|Q86A88|DYL_DICDI Dynein light chain, cytoplasmic OS=Dictyostelium discoideum GN=dlcB PE=3 SV=1

 Score = 80.1 bits (196), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 40/86 (46%), Positives = 48/86 (55%), Gaps = 11/86 (12%)

Query: 1  MPAHMQQHALRFTRSLVDDYYSESSAPKTSRPNPTHLARALKKEFDDAYGPAWHCVVGKS 60
          MP  MQQ A   T    ++   E             +A  +KKEFD  Y P WHC+VGKS
Sbjct: 15 MPDFMQQDATECTIKAFEETNIERD-----------IAMIIKKEFDKKYSPTWHCIVGKS 63

Query: 61 FGSFVTHSPAGFLYFSIDSLSVLLFK 86
          FGSFVTH    F+YF+I+  SVLLFK
Sbjct: 64 FGSFVTHETKNFIYFNINKHSVLLFK 89

Acts as a non-catalytic accessory component of a dynein complex.
Dictyostelium discoideum (taxid: 44689)

>sp|O02414|DYL1_HELCR Dynein light chain LC6, flagellar outer arm OS=Heliocidaris crassispina PE=3 SV=1

 Score = 73.6 bits (179), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 34/87 (39%), Positives = 49/87 (56%), Gaps = 11/87 (12%)

Query: 1  MPAHMQQHALRFTRSLVDDYYSESSAPKTSRPNPTHLARALKKEFDDAYGPAWHCVVGKS 60
          MP  MQQ A+      ++ +  E             +A  +KKEFD  Y P WHC+VG++
Sbjct: 13 MPEDMQQDAVDCATQALEKFNIEKD-----------IAAYIKKEFDKKYNPTWHCIVGRN 61

Query: 61 FGSFVTHSPAGFLYFSIDSLSVLLFKT 87
          FGS+VTH    F+YF +  ++VLLFK+
Sbjct: 62 FGSYVTHETKHFIYFYLGQVAVLLFKS 88

Anthocidaris crassispina (taxid: 7629)

>sp|O94111|DYL1_EMENI Dynein light chain, cytoplasmic OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) GN=nudG PE=3 SV=1

 Score = 72.4 bits (176), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 34/88 (38%), Positives = 49/88 (55%), Gaps = 11/88 (12%)

Query: 1  MPAHMQQHALRFTRSLVDDYYSESSAPKTSRPNPTHLARALKKEFDDAYGPAWHCVVGKS 60
          M   MQQ A+      ++ Y+ E             +A+ +K+EFD   G  WHCVVG++
Sbjct: 18 MSEDMQQEAVEVAIEAMEKYHIEKD-----------IAQYIKREFDSRKGATWHCVVGRN 66

Query: 61 FGSFVTHSPAGFLYFSIDSLSVLLFKTE 88
          FGSFVTH    F+YF +   ++LLFKT+
Sbjct: 67 FGSFVTHETKHFIYFYLGHCAILLFKTQ 94

Acts as one of several non-catalytic accessory components of the cytoplasmic dynein complex that are thought to be involved in linking dynein to cargos and to adapter proteins that regulate dynein function. Cytoplasmic dynein acts as a motor for the intracellular retrograde motility of vesicles and organelles along microtubules. May play a role in changing or maintaining the spatial distribution of cytoskeletal structures.

Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) (taxid: 227321)

>sp|Q24117|DYL1_DROME Dynein light chain 1, cytoplasmic OS=Drosophila melanogaster GN=ctp PE=1 SV=1

 Score = 72.0 bits (175), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 33/87 (37%), Positives = 48/87 (55%), Gaps = 11/87 (12%)

Query: 1  MPAHMQQHALRFTRSLVDDYYSESSAPKTSRPNPTHLARALKKEFDDAYGPAWHCVVGKS 60
          M   MQQ A+      ++ Y  E             +A  +KKEFD  Y P WHC+VG++
Sbjct: 13 MSEEMQQDAVDCATQALEKYNIEKD-----------IAAYIKKEFDKKYNPTWHCIVGRN 61

Query: 61 FGSFVTHSPAGFLYFSIDSLSVLLFKT 87
          FGS+VTH    F+YF +  +++LLFK+
Sbjct: 62 FGSYVTHETRHFIYFYLGQVAILLFKS 88

Acts as a non-catalytic accessory component of a dynein complex.

Drosophila melanogaster (taxid: 7227)

>sp|Q78P75|DYL2_RAT Dynein light chain 2, cytoplasmic OS=Rattus norvegicus GN=Dynll2 PE=1 SV=1

 Score = 71.6 bits (174), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 33/87 (37%), Positives = 48/87 (55%), Gaps = 11/87 (12%)

Query: 1  MPAHMQQHALRFTRSLVDDYYSESSAPKTSRPNPTHLARALKKEFDDAYGPAWHCVVGKS 60
          M   MQQ A+      ++ Y  E             +A  +KKEFD  Y P WHC+VG++
Sbjct: 13 MSEDMQQDAVDCATQAMEKYNIEKD-----------IAAYIKKEFDKKYNPTWHCIVGRN 61

Query: 61 FGSFVTHSPAGFLYFSIDSLSVLLFKT 87
          FGS+VTH    F+YF +  +++LLFK+
Sbjct: 62 FGSYVTHETKHFIYFYLGQVAILLFKS 88

Acts as one of several non-catalytic accessory components of the cytoplasmic dynein 1 complex that are thought to be involved in linking dynein to cargos and to adapter proteins that regulate dynein function. Cytoplasmic dynein 1 acts as a motor for the intracellular retrograde motility of vesicles and organelles along microtubules. May play a role in changing or maintaining the spatial distribution of cytoskeletal structures.

Rattus norvegicus (taxid: 10116)

>sp|Q9D0M5|DYL2_MOUSE Dynein light chain 2, cytoplasmic OS=Mus musculus GN=Dynll2 PE=1 SV=1

 Score = 71.6 bits (174), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 33/87 (37%), Positives = 48/87 (55%), Gaps = 11/87 (12%)

Query: 1  MPAHMQQHALRFTRSLVDDYYSESSAPKTSRPNPTHLARALKKEFDDAYGPAWHCVVGKS 60
          M   MQQ A+      ++ Y  E             +A  +KKEFD  Y P WHC+VG++
Sbjct: 13 MSEDMQQDAVDCATQAMEKYNIEKD-----------IAAYIKKEFDKKYNPTWHCIVGRN 61

Query: 61 FGSFVTHSPAGFLYFSIDSLSVLLFKT 87
          FGS+VTH    F+YF +  +++LLFK+
Sbjct: 62 FGSYVTHETKHFIYFYLGQVAILLFKS 88

Acts as one of several non-catalytic accessory components of the cytoplasmic dynein 1 complex that are thought to be involved in linking dynein to cargos and to adapter proteins that regulate dynein function. Cytoplasmic dynein 1 acts as a motor for the intracellular retrograde motility of vesicles and organelles along microtubules. May play a role in changing or maintaining the spatial distribution of cytoskeletal structures.

Mus musculus (taxid: 10090)

>sp|Q96FJ2|DYL2_HUMAN Dynein light chain 2, cytoplasmic OS=Homo sapiens GN=DYNLL2 PE=1 SV=1

 Score = 71.6 bits (174), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 33/87 (37%), Positives = 48/87 (55%), Gaps = 11/87 (12%)

Query: 1  MPAHMQQHALRFTRSLVDDYYSESSAPKTSRPNPTHLARALKKEFDDAYGPAWHCVVGKS 60
          M   MQQ A+      ++ Y  E             +A  +KKEFD  Y P WHC+VG++
Sbjct: 13 MSEDMQQDAVDCATQAMEKYNIEKD-----------IAAYIKKEFDKKYNPTWHCIVGRN 61

Query: 61 FGSFVTHSPAGFLYFSIDSLSVLLFKT 87
          FGS+VTH    F+YF +  +++LLFK+
Sbjct: 62 FGSYVTHETKHFIYFYLGQVAILLFKS 88

Acts as one of several non-catalytic accessory components of the cytoplasmic dynein 1 complex that are thought to be involved in linking dynein to cargos and to adapter proteins that regulate dynein function. Cytoplasmic dynein 1 acts as a motor for the intracellular retrograde motility of vesicles and organelles along microtubules. May play a role in changing or maintaining the spatial distribution of cytoskeletal structures.

Homo sapiens (taxid: 9606)

>sp|Q3MHR3|DYL2_BOVIN Dynein light chain 2, cytoplasmic OS=Bos taurus GN=DYNLL2 PE=3 SV=1

 Score = 71.6 bits (174), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 33/87 (37%), Positives = 48/87 (55%), Gaps = 11/87 (12%)

Query: 1  MPAHMQQHALRFTRSLVDDYYSESSAPKTSRPNPTHLARALKKEFDDAYGPAWHCVVGKS 60
          M   MQQ A+      ++ Y  E             +A  +KKEFD  Y P WHC+VG++
Sbjct: 13 MSEDMQQDAVDCATQAMEKYNIEKD-----------IAAYIKKEFDKKYNPTWHCIVGRN 61

Query: 61 FGSFVTHSPAGFLYFSIDSLSVLLFKT 87
          FGS+VTH    F+YF +  +++LLFK+
Sbjct: 62 FGSYVTHETKHFIYFYLGQVAILLFKS 88

Acts as one of several non-catalytic accessory components of the cytoplasmic dynein 1 complex that are thought to be involved in linking dynein to cargos and to adapter proteins that regulate dynein function. Cytoplasmic dynein 1 acts as a motor for the intracellular retrograde motility of vesicles and organelles along microtubules. May be involved in some aspects of dynein-related intracellular transport and motility. May play a role in changing or maintaining the spatial distribution of cytoskeletal structures.

Bos taurus (taxid: 9913)

>sp|P63170|DYL1_RAT Dynein light chain 1, cytoplasmic OS=Rattus norvegicus GN=Dynll1 PE=1 SV=1

 Score = 71.6 bits (174), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 32/87 (36%), Positives = 48/87 (55%), Gaps = 11/87 (12%)

Query: 1  MPAHMQQHALRFTRSLVDDYYSESSAPKTSRPNPTHLARALKKEFDDAYGPAWHCVVGKS 60
          M   MQQ ++      ++ Y  E             +A  +KKEFD  Y P WHC+VG++
Sbjct: 13 MSEEMQQDSVECATQALEKYNIEKD-----------IAAHIKKEFDKKYNPTWHCIVGRN 61

Query: 61 FGSFVTHSPAGFLYFSIDSLSVLLFKT 87
          FGS+VTH    F+YF +  +++LLFK+
Sbjct: 62 FGSYVTHETKHFIYFYLGQVAILLFKS 88

Regulates apoptotic activities of BCL2L11 by sequestering it to microtubules. Upon apoptotic stimuli the BCL2L11-DYNLL1 complex dissociates from cytoplasmic dynein and translocates to mitochondria and sequesters BCL2 thus neutralizing its antiapoptotic activity.

Rattus norvegicus (taxid: 10116)

>sp|P63169|DYL1_RABIT Dynein light chain 1, cytoplasmic OS=Oryctolagus cuniculus GN=DYNLL1 PE=1 SV=1

 Score = 71.6 bits (174), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 32/87 (36%), Positives = 48/87 (55%), Gaps = 11/87 (12%)

Query: 1  MPAHMQQHALRFTRSLVDDYYSESSAPKTSRPNPTHLARALKKEFDDAYGPAWHCVVGKS 60
          M   MQQ ++      ++ Y  E             +A  +KKEFD  Y P WHC+VG++
Sbjct: 13 MSEEMQQDSVECATQALEKYNIEKD-----------IAAHIKKEFDKKYNPTWHCIVGRN 61

Query: 61 FGSFVTHSPAGFLYFSIDSLSVLLFKT 87
          FGS+VTH    F+YF +  +++LLFK+
Sbjct: 62 FGSYVTHETKHFIYFYLGQVAILLFKS 88

Regulates apoptotic activities of BCL2L11 by sequestering it to microtubules. Upon apoptotic stimuli the BCL2L11-DYNLL1 complex dissociates from cytoplasmic dynein and translocates to mitochondria and sequesters BCL2 thus neutralizing its antiapoptotic activity.

Oryctolagus cuniculus (taxid: 9986)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	95
225461427	135	PREDICTED: dynein light chain, cytoplasm	0.926	0.651	0.702	2e-32
302143018	204	unnamed protein product [Vitis vinifera]	0.926	0.431	0.702	2e-32
224128346	118	predicted protein [Populus trichocarpa]	0.968	0.779	0.712	2e-30
224117200	133	predicted protein [Populus trichocarpa]	0.968	0.691	0.723	4e-30
224151853	103	predicted protein [Populus trichocarpa]	0.968	0.893	0.723	8e-30
356544034	152	PREDICTED: dynein light chain, cytoplasm	0.936	0.585	0.648	1e-27
224139220	154	predicted protein [Populus trichocarpa]	0.936	0.577	0.617	3e-26
224074651	160	predicted protein [Populus trichocarpa]	0.915	0.543	0.634	7e-26
225466127	153	PREDICTED: dynein light chain [Vitis vin	0.926	0.575	0.621	6e-25
255539787	159	axonemal dynein light chain, putative [R	0.905	0.540	0.591	1e-24

>gi|225461427|ref|XP_002282291.1| PREDICTED: dynein light chain, cytoplasmic-like [Vitis vinifera]

 Score =  143 bits (360), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 66/94 (70%), Positives = 75/94 (79%), Gaps = 6/94 (6%)

Query: 1   MPAHMQQHALRFTRSLVDDYYSESSAPKTSRPNPTHLARALKKEFDDAYGPAWHCVVGKS 60
           MP  MQ HALR++RSLVD      + P  +RPNP+H+ARALKKEFD  YGPAWHCV G S
Sbjct: 45  MPPAMQDHALRYSRSLVD------AIPDATRPNPSHIARALKKEFDSVYGPAWHCVAGTS 98

Query: 61  FGSFVTHSPAGFLYFSIDSLSVLLFKTEVQLVKE 94
           FGSFVTHSP GF+YFSIDSL +LLFKTEV+LV E
Sbjct: 99  FGSFVTHSPGGFVYFSIDSLYILLFKTEVKLVTE 132

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|302143018|emb|CBI20313.3| unnamed protein product [Vitis vinifera]

 Score =  142 bits (359), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 66/94 (70%), Positives = 75/94 (79%), Gaps = 6/94 (6%)

Query: 1   MPAHMQQHALRFTRSLVDDYYSESSAPKTSRPNPTHLARALKKEFDDAYGPAWHCVVGKS 60
           MP  MQ HALR++RSLVD      + P  +RPNP+H+ARALKKEFD  YGPAWHCV G S
Sbjct: 114 MPPAMQDHALRYSRSLVD------AIPDATRPNPSHIARALKKEFDSVYGPAWHCVAGTS 167

Query: 61  FGSFVTHSPAGFLYFSIDSLSVLLFKTEVQLVKE 94
           FGSFVTHSP GF+YFSIDSL +LLFKTEV+LV E
Sbjct: 168 FGSFVTHSPGGFVYFSIDSLYILLFKTEVKLVTE 201

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224128346|ref|XP_002329139.1| predicted protein [Populus trichocarpa] gi|222869808|gb|EEF06939.1| predicted protein [Populus trichocarpa]

 Score =  135 bits (341), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 67/94 (71%), Positives = 75/94 (79%), Gaps = 2/94 (2%)

Query: 1   MPAHMQQHALRFTRSLVDDYYSESSAPKTSRPNPTHLARALKKEFDDAYGPAWHCVVGKS 60
           MP  MQ+ ALR+ RS +DD  S SSAPK  RPNPT LARALKKEFD  YG AWHCV G S
Sbjct: 19  MPVDMQERALRYARSFLDDP-SISSAPK-HRPNPTLLARALKKEFDSVYGVAWHCVAGNS 76

Query: 61  FGSFVTHSPAGFLYFSIDSLSVLLFKTEVQLVKE 94
           FGSFVTHSP GF+YFSIDSL ++LFKTEV++V E
Sbjct: 77  FGSFVTHSPGGFMYFSIDSLFIVLFKTEVKMVTE 110

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224117200|ref|XP_002317506.1| predicted protein [Populus trichocarpa] gi|222860571|gb|EEE98118.1| predicted protein [Populus trichocarpa]

 Score =  135 bits (339), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 68/94 (72%), Positives = 73/94 (77%), Gaps = 2/94 (2%)

Query: 1   MPAHMQQHALRFTRSLVDDYYSESSAPKTSRPNPTHLARALKKEFDDAYGPAWHCVVGKS 60
           MP  MQ+ ALR+ RS +D   S SSA    RPN T LARALKKEFD AYG AWHCVVGKS
Sbjct: 31  MPVDMQERALRYARSFLDK--SPSSAAPKPRPNLTLLARALKKEFDSAYGVAWHCVVGKS 88

Query: 61  FGSFVTHSPAGFLYFSIDSLSVLLFKTEVQLVKE 94
           FGSFVTHS  GF+YFSIDSL +LLFKTEVQLV E
Sbjct: 89  FGSFVTHSQGGFIYFSIDSLFILLFKTEVQLVTE 122

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224151853|ref|XP_002337161.1| predicted protein [Populus trichocarpa] gi|222838380|gb|EEE76745.1| predicted protein [Populus trichocarpa]

 Score =  134 bits (337), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 68/94 (72%), Positives = 73/94 (77%), Gaps = 2/94 (2%)

Query: 1  MPAHMQQHALRFTRSLVDDYYSESSAPKTSRPNPTHLARALKKEFDDAYGPAWHCVVGKS 60
          MP  MQ+ ALR+ RS +D   S SSA    RPN T LARALKKEFD AYG AWHCVVGKS
Sbjct: 1  MPVDMQERALRYARSFLDK--SPSSAAPKPRPNLTLLARALKKEFDSAYGVAWHCVVGKS 58

Query: 61 FGSFVTHSPAGFLYFSIDSLSVLLFKTEVQLVKE 94
          FGSFVTHS  GF+YFSIDSL +LLFKTEVQLV E
Sbjct: 59 FGSFVTHSQGGFIYFSIDSLFILLFKTEVQLVTE 92

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356544034|ref|XP_003540461.1| PREDICTED: dynein light chain, cytoplasmic-like [Glycine max]

 Score =  127 bits (318), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 61/94 (64%), Positives = 74/94 (78%), Gaps = 5/94 (5%)

Query: 1   MPAHMQQHALRFTRSLVDDYYSESSAPKTSRPNPTHLARALKKEFDDAYGPAWHCVVGKS 60
           MP+HMQ+HALR TRSL   ++     P + +P+ T +ARALKKEFD  YG AWHCV+GKS
Sbjct: 60  MPSHMQEHALRHTRSLFPLHH-----PPSPKPSNTLIARALKKEFDSKYGLAWHCVIGKS 114

Query: 61  FGSFVTHSPAGFLYFSIDSLSVLLFKTEVQLVKE 94
           FGSFV+H+  GF+YFSIDSLSVLLFKTEV LV +
Sbjct: 115 FGSFVSHTGGGFIYFSIDSLSVLLFKTEVHLVTQ 148

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224139220|ref|XP_002326798.1| predicted protein [Populus trichocarpa] gi|222834120|gb|EEE72597.1| predicted protein [Populus trichocarpa]

 Score =  122 bits (306), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 58/94 (61%), Positives = 71/94 (75%), Gaps = 5/94 (5%)

Query: 1   MPAHMQQHALRFTRSLVDDYYSESSAPKTSRPNPTHLARALKKEFDDAYGPAWHCVVGKS 60
           MP  MQ+ A R TR+L+D    ES      +PNP+H+A  LKKEFD+ YG AWHCVVGKS
Sbjct: 57  MPDAMQERAFRCTRTLLDATSLESK-----KPNPSHIAMCLKKEFDEIYGLAWHCVVGKS 111

Query: 61  FGSFVTHSPAGFLYFSIDSLSVLLFKTEVQLVKE 94
           FGSF+T S  GF+YFS+D+LS+LLFKTEVQ VK+
Sbjct: 112 FGSFITCSSGGFVYFSVDNLSILLFKTEVQPVKK 145

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224074651|ref|XP_002304408.1| predicted protein [Populus trichocarpa] gi|222841840|gb|EEE79387.1| predicted protein [Populus trichocarpa]

 Score =  121 bits (303), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 59/93 (63%), Positives = 70/93 (75%), Gaps = 6/93 (6%)

Query: 1   MPAHMQQHALRFTRSLVDDYYSESSAPKTSRPNPTHLARALKKEFDDAYGPAWHCVVGKS 60
           MP  MQ+HA RF+R+L+D    ES       PNPTH+A +LKKEFD  YG AWHC+VGKS
Sbjct: 64  MPGAMQEHAFRFSRALLDANNLESK-----NPNPTHIAMSLKKEFDAMYGIAWHCIVGKS 118

Query: 61  FGSFVTHSPAGFLYFSIDSLSVLLFKTEVQLVK 93
           +GSFVTHS  GF+YFS+D+LS  LFKTEVQ VK
Sbjct: 119 YGSFVTHSSGGFVYFSVDNLS-FLFKTEVQPVK 150

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225466127|ref|XP_002268204.1| PREDICTED: dynein light chain [Vitis vinifera] gi|296084214|emb|CBI24602.3| unnamed protein product [Vitis vinifera]

 Score =  118 bits (295), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 59/95 (62%), Positives = 68/95 (71%), Gaps = 7/95 (7%)

Query: 1   MPAHMQQHALRFTRSLVDDYYSESSAPKTSRPNPTHLARALKKEFDDAYGPAWHCVVGKS 60
           M A MQ+ A R+ RSL+D       A   + P PTHLA  LKKEFD  YGPAWHC+VGKS
Sbjct: 64  MSAAMQERAFRYARSLLD-------AHSDNVPTPTHLAMRLKKEFDALYGPAWHCIVGKS 116

Query: 61  FGSFVTHSPAGFLYFSIDSLSVLLFKTEVQLVKES 95
           FGSFVTHS  GF+YFSID LS LLFKTEV+ + +S
Sbjct: 117 FGSFVTHSSGGFVYFSIDKLSFLLFKTEVRPIIKS 151

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255539787|ref|XP_002510958.1| axonemal dynein light chain, putative [Ricinus communis] gi|223550073|gb|EEF51560.1| axonemal dynein light chain, putative [Ricinus communis]

 Score =  117 bits (293), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 55/93 (59%), Positives = 66/93 (70%), Gaps = 7/93 (7%)

Query: 1   MPAHMQQHALRFTRSLVDDYYSESSAPKTSRPNPTHLARALKKEFDDAYGPAWHCVVGKS 60
           MP  MQ+ A R TR+++D    +         NPTH+A  LKKEFD  YGPAWHC+VGKS
Sbjct: 58  MPGAMQERAFRCTRAVLDANLEKKL-------NPTHIAMCLKKEFDAVYGPAWHCIVGKS 110

Query: 61  FGSFVTHSPAGFLYFSIDSLSVLLFKTEVQLVK 93
           FGSFVTHS  GF+YFS+D LS LLFKTEV+ V+
Sbjct: 111 FGSFVTHSSGGFVYFSVDKLSFLLFKTEVRPVR 143

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	95
TAIR|locus:2147725	209	AT5G20110 "AT5G20110" [Arabido	0.852	0.387	0.555	7.2e-20
UNIPROTKB|Q4W5W8	313	vfPIP "Dynein light chain" [Vi	0.852	0.258	0.571	4e-19
TAIR|locus:2028045	129	AT1G23220 "AT1G23220" [Arabido	0.863	0.635	0.511	8.3e-19
DICTYBASE|DDB_G0274815	91	dlcB "cytoplasmic dynein light	0.526	0.549	0.64	3e-14
WB|WBGene00043067	186	dlc-5 [Caenorhabditis elegans	0.831	0.424	0.422	3e-14
TAIR|locus:2131764	103	AT4G27360 "AT4G27360" [Arabido	0.589	0.543	0.571	4.9e-14
GENEDB_PFALCIPARUM|PFL0660w	93	PFL0660w "dynein light chain 1	0.536	0.548	0.549	1.2e-12
UNIPROTKB|Q8I5R9	93	PFL0660w "Dynein light chain 1	0.536	0.548	0.549	1.2e-12
FB|FBgn0026141	89	Cdlc2 "Cytoplasmic dynein ligh	0.536	0.573	0.509	2.4e-12
FB|FBgn0011760	89	ctp "cut up" [Drosophila melan	0.536	0.573	0.509	2.4e-12

TAIR|locus:2147725 AT5G20110 "AT5G20110" [Arabidopsis thaliana (taxid:3702)]

 Score = 236 (88.1 bits), Expect = 7.2e-20, P = 7.2e-20
 Identities = 50/90 (55%), Positives = 57/90 (63%)

Query:     1 MPAHMQQHALRFTRSLVDDYYSESSAPKTSRPNPTHLARALKKEFDDAYGPAWHCVVGKS 60
             MP  MQ HA R  R  +D     SS          H+A  LKKEFD  YGPAWHC+VG S
Sbjct:   124 MPGFMQAHAFRCARMTLDSLEKFSSK---------HMAFNLKKEFDKGYGPAWHCIVGSS 174

Query:    61 FGSFVTHSPAGFLYFSIDSLSVLLFKTEVQ 90
             FGSFVTHS   F+YFS+D L VLLFKT+V+
Sbjct:   175 FGSFVTHSTGCFIYFSMDKLYVLLFKTKVR 204

GO:0003777 "microtubule motor activity" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISM

GO:0005875 "microtubule associated complex" evidence=IEA;ISS

GO:0007017 "microtubule-based process" evidence=IEA;ISS

UNIPROTKB|Q4W5W8 vfPIP "Dynein light chain" [Vicia faba (taxid:3906)]

 Score = 229 (85.7 bits), Expect = 4.0e-19, P = 4.0e-19
 Identities = 52/91 (57%), Positives = 57/91 (62%)

Query:     1 MPAHMQQHALRFTRSLVDDYYSESSAPKTSRPNPTHLARALKKEFDDAYGPAWHCVVGKS 60
             MP  MQ HA+   R   D    E    KT       LA +LKKEFD  YGPAWHC+VG S
Sbjct:   229 MPPFMQIHAVDCARKAFDSM--EKFTSKT-------LASSLKKEFDGVYGPAWHCIVGTS 279

Query:    61 FGSFVTHSPAGFLYFSIDS-LSVLLFKTEVQ 90
             FGSFVTHS  GFLYFS+D  L +LLFKT VQ
Sbjct:   280 FGSFVTHSVGGFLYFSMDQKLYILLFKTAVQ 310

GO:0005515 "protein binding" evidence=IPI

TAIR|locus:2028045 AT1G23220 "AT1G23220" [Arabidopsis thaliana (taxid:3702)]

 Score = 226 (84.6 bits), Expect = 8.3e-19, P = 8.3e-19
 Identities = 46/90 (51%), Positives = 58/90 (64%)

Query:     1 MPAHMQQHALRFTRSLVDDYYSESSAPKTSRPNPTHLARALKKEFDDAYGPAWHCVVGKS 60
             MP   Q  A   +R +++      + P   + +   LA ALKK+FD AYGPAWHC+VG S
Sbjct:    43 MPLPQQNRAFSLSREILN------ATP--GKADNKRLAHALKKDFDSAYGPAWHCIVGTS 94

Query:    61 FGSFVTHSPAGFLYFSIDSLSVLLFKTEVQ 90
             FGS+VTHS  GFLYF ID + VLLFKT V+
Sbjct:    95 FGSYVTHSTGGFLYFQIDKVYVLLFKTAVE 124

GO:0003777 "microtubule motor activity" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISM

GO:0005875 "microtubule associated complex" evidence=IEA;ISS

GO:0007017 "microtubule-based process" evidence=IEA;ISS

DICTYBASE|DDB_G0274815 dlcB "cytoplasmic dynein light chain" [Dictyostelium discoideum (taxid:44689)]

 Score = 183 (69.5 bits), Expect = 3.0e-14, P = 3.0e-14
 Identities = 32/50 (64%), Positives = 38/50 (76%)

Query:    37 LARALKKEFDDAYGPAWHCVVGKSFGSFVTHSPAGFLYFSIDSLSVLLFK 86
             +A  +KKEFD  Y P WHC+VGKSFGSFVTH    F+YF+I+  SVLLFK
Sbjct:    40 IAMIIKKEFDKKYSPTWHCIVGKSFGSFVTHETKNFIYFNINKHSVLLFK 89

GO:0007017 "microtubule-based process" evidence=IEA

GO:0005875 "microtubule associated complex" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA;ISS

GO:0030286 "dynein complex" evidence=IEA

GO:0005874 "microtubule" evidence=IEA

GO:0005856 "cytoskeleton" evidence=IEA

GO:0003774 "motor activity" evidence=IEA

GO:0044351 "macropinocytosis" evidence=RCA

WB|WBGene00043067 dlc-5 [Caenorhabditis elegans (taxid:6239)]

 Score = 183 (69.5 bits), Expect = 3.0e-14, P = 3.0e-14
 Identities = 38/90 (42%), Positives = 49/90 (54%)

Query:     1 MPAHMQQHALRFTRSLVDDYYSESSAPKTSRPNPTHLARALKKEFDDAYGPAWHCVVGKS 60
             MP HM+Q A       +  Y+ E             +AR LK  FD  YGP WHC+ GK 
Sbjct:    65 MPRHMEQEACSLAAKSIMTYHLEHD-----------IARHLKMAFDREYGPDWHCICGKH 113

Query:    61 FGSFVTHSPAGFLYFSIDSLSVLLFKTEVQ 90
             FGSFVT  P  F+YF I +++ +LFKT +Q
Sbjct:   114 FGSFVTFEPDSFIYFRIGTIAFMLFKTSLQ 143

GO:0005875 "microtubule associated complex" evidence=IEA

GO:0007017 "microtubule-based process" evidence=IEA

TAIR|locus:2131764 AT4G27360 "AT4G27360" [Arabidopsis thaliana (taxid:3702)]

 Score = 181 (68.8 bits), Expect = 4.9e-14, P = 4.9e-14
 Identities = 32/56 (57%), Positives = 41/56 (73%)

Query:    34 PTHLARALKKEFDDAYGPAWHCVVGKSFGSFVTHSPAGFLYFSIDSLSVLLFKTEV 89
             PT +AR +KKEFD +YG  W C+VG  FGSFVTH    F++FS+ SL++LLFK  V
Sbjct:    37 PTQIARFIKKEFDRSYGSGWQCIVGTHFGSFVTHCSGCFIHFSVGSLTILLFKGSV 92

GO:0003777 "microtubule motor activity" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISM

GO:0005875 "microtubule associated complex" evidence=IEA;ISS

GO:0007017 "microtubule-based process" evidence=IEA;ISS

GENEDB_PFALCIPARUM|PFL0660w PFL0660w "dynein light chain 1, putative" [Plasmodium falciparum (taxid:5833)]

 Score = 168 (64.2 bits), Expect = 1.2e-12, P = 1.2e-12
 Identities = 28/51 (54%), Positives = 38/51 (74%)

Query:    37 LARALKKEFDDAYGPAWHCVVGKSFGSFVTHSPAGFLYFSIDSLSVLLFKT 87
             +A  +KKEFD  Y P WHCVVG++FGS+VTH    F+YF I  +++LLFK+
Sbjct:    42 IAAHIKKEFDRKYDPTWHCVVGRNFGSYVTHETKNFIYFYIGQVAILLFKS 92

GO:0005868 "cytoplasmic dynein complex" evidence=ISS

GO:0007018 "microtubule-based movement" evidence=ISS

UNIPROTKB|Q8I5R9 PFL0660w "Dynein light chain 1, putative" [Plasmodium falciparum 3D7 (taxid:36329)]

 Score = 168 (64.2 bits), Expect = 1.2e-12, P = 1.2e-12
 Identities = 28/51 (54%), Positives = 38/51 (74%)

Query:    37 LARALKKEFDDAYGPAWHCVVGKSFGSFVTHSPAGFLYFSIDSLSVLLFKT 87
             +A  +KKEFD  Y P WHCVVG++FGS+VTH    F+YF I  +++LLFK+
Sbjct:    42 IAAHIKKEFDRKYDPTWHCVVGRNFGSYVTHETKNFIYFYIGQVAILLFKS 92

GO:0005868 "cytoplasmic dynein complex" evidence=ISS

GO:0007018 "microtubule-based movement" evidence=ISS

FB|FBgn0026141 Cdlc2 "Cytoplasmic dynein light chain 2" [Drosophila melanogaster (taxid:7227)]

 Score = 165 (63.1 bits), Expect = 2.4e-12, P = 2.4e-12
 Identities = 26/51 (50%), Positives = 38/51 (74%)

Query:    37 LARALKKEFDDAYGPAWHCVVGKSFGSFVTHSPAGFLYFSIDSLSVLLFKT 87
             +A  +KKEFD  Y P WHC+VG++FGS+VTH    F+YF +  +++LLFK+
Sbjct:    38 IAAFIKKEFDKKYNPTWHCIVGRNFGSYVTHETRHFIYFYLGQVAILLFKS 88

GO:0005856 "cytoskeleton" evidence=NAS

GO:0003774 "motor activity" evidence=ISS

GO:0005868 "cytoplasmic dynein complex" evidence=ISS

GO:0042623 "ATPase activity, coupled" evidence=ISS

GO:0007018 "microtubule-based movement" evidence=ISS

GO:0030286 "dynein complex" evidence=ISS

GO:0005737 "cytoplasm" evidence=NAS

GO:0007017 "microtubule-based process" evidence=IEA

FB|FBgn0011760 ctp "cut up" [Drosophila melanogaster (taxid:7227)]

 Score = 165 (63.1 bits), Expect = 2.4e-12, P = 2.4e-12
 Identities = 26/51 (50%), Positives = 38/51 (74%)

Query:    37 LARALKKEFDDAYGPAWHCVVGKSFGSFVTHSPAGFLYFSIDSLSVLLFKT 87
             +A  +KKEFD  Y P WHC+VG++FGS+VTH    F+YF +  +++LLFK+
Sbjct:    38 IAAYIKKEFDKKYNPTWHCIVGRNFGSYVTHETRHFIYFYLGQVAILLFKS 88

GO:0005856 "cytoskeleton" evidence=NAS

GO:0048477 "oogenesis" evidence=IMP

GO:0035220 "wing disc development" evidence=IMP

GO:0022416 "chaeta development" evidence=IMP

GO:0005737 "cytoplasm" evidence=IDA

GO:0005868 "cytoplasmic dynein complex" evidence=ISS;NAS

GO:0003777 "microtubule motor activity" evidence=NAS

GO:0007018 "microtubule-based movement" evidence=ISS

GO:0030286 "dynein complex" evidence=ISS

GO:0042623 "ATPase activity, coupled" evidence=ISS

GO:0007476 "imaginal disc-derived wing morphogenesis" evidence=IMP

GO:0007283 "spermatogenesis" evidence=IMP

GO:0008407 "chaeta morphogenesis" evidence=IMP

GO:0007291 "sperm individualization" evidence=IMP

GO:0007290 "spermatid nucleus elongation" evidence=IMP

GO:0051017 "actin filament bundle assembly" evidence=IMP

GO:0005515 "protein binding" evidence=IPI

GO:0045505 "dynein intermediate chain binding" evidence=IPI

GO:0042803 "protein homodimerization activity" evidence=IDA

GO:0035071 "salivary gland cell autophagic cell death" evidence=IMP

GO:0006914 "autophagy" evidence=IMP

GO:0022008 "neurogenesis" evidence=IMP

GO:0034454 "microtubule anchoring at centrosome" evidence=IMP

GO:0000132 "establishment of mitotic spindle orientation" evidence=IMP

GO:0005814 "centriole" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
O94111	DYL1_EMENI	No assigned EC number	0.3863	0.8105	0.8191	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00027663001 SubName- Full=Chromosome chr19 scaffold_4, whole genome shotgun sequence; (204 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	95
pfam01221	86	pfam01221, Dynein_light, Dynein light chain type 1	1e-31
PLN03058	128	PLN03058, PLN03058, dynein light chain type 1 fami	9e-29
PTZ00059	90	PTZ00059, PTZ00059, dynein light chain; Provisiona	4e-21

>gnl|CDD|189895 pfam01221, Dynein_light, Dynein light chain type 1

 Score =  105 bits (264), Expect = 1e-31
 Identities = 37/87 (42%), Positives = 49/87 (56%), Gaps = 11/87 (12%)

Query: 1  MPAHMQQHALRFTRSLVDDYYSESSAPKTSRPNPTHLARALKKEFDDAYGPAWHCVVGKS 60
          MP  MQ+ A+      ++ +  E             +A  +KKEFD  YGP WHC+VGK+
Sbjct: 10 MPEEMQEDAIECAAEALEKFNVE-----------KDIAAHIKKEFDKKYGPTWHCIVGKN 58

Query: 61 FGSFVTHSPAGFLYFSIDSLSVLLFKT 87
          FGS+VTH    F+YF I  L+ LLFKT
Sbjct: 59 FGSYVTHETKHFIYFYIGQLAFLLFKT 85

Length = 86

>gnl|CDD|166697 PLN03058, PLN03058, dynein light chain type 1 family protein; Provisional

 Score =  100 bits (249), Expect = 9e-29
 Identities = 48/90 (53%), Positives = 59/90 (65%), Gaps = 8/90 (8%)

Query: 1   MPAHMQQHALRFTRSLVDDYYSESSAPKTSRPNPTHLARALKKEFDDAYGPAWHCVVGKS 60
           MP  +Q  A    R ++D      + P   + +   LA ALKKEFD AYGPAWHC+VG S
Sbjct: 43  MPLVLQNRAFSCARDILD------AMP--GKLDSKRLALALKKEFDSAYGPAWHCIVGTS 94

Query: 61  FGSFVTHSPAGFLYFSIDSLSVLLFKTEVQ 90
           FGS+VTHS  GFLYFSID + +LLFKT V+
Sbjct: 95  FGSYVTHSTGGFLYFSIDKVYILLFKTAVE 124

Length = 128

>gnl|CDD|185421 PTZ00059, PTZ00059, dynein light chain; Provisional

 Score = 79.5 bits (196), Expect = 4e-21
 Identities = 32/87 (36%), Positives = 48/87 (55%), Gaps = 11/87 (12%)

Query: 1  MPAHMQQHALRFTRSLVDDYYSESSAPKTSRPNPTHLARALKKEFDDAYGPAWHCVVGKS 60
          M   MQQ A+      ++ +  E             +A  +KKEFD  Y P WHC+VG++
Sbjct: 14 MSEDMQQDAIDCANQALEKFNIEKD-----------IAAYIKKEFDKKYNPTWHCIVGRN 62

Query: 61 FGSFVTHSPAGFLYFSIDSLSVLLFKT 87
          FGS+VTH    F+YF +  +++LLFK+
Sbjct: 63 FGSYVTHETKHFIYFYLGQVAILLFKS 89

Length = 90

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	95
KOG3430	90	consensus Dynein light chain type 1 [Cytoskeleton]	100.0
PLN03058	128	dynein light chain type 1 family protein; Provisio	100.0
PTZ00059	90	dynein light chain; Provisional	100.0
PF01221	89	Dynein_light: Dynein light chain type 1 ; InterPro	100.0
PF04155	76	Ground-like: Ground-like domain; InterPro: IPR0072	97.22
PF05075	345	DUF684: Protein of unknown function (DUF684); Inte	82.02

>KOG3430 consensus Dynein light chain type 1 [Cytoskeleton]

Probab=100.00  E-value=2.3e-37  Score=197.02  Aligned_cols=78  Identities=45%  Similarity=0.939  Sum_probs=75.1

Q ss_pred             CCHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCHHHHHHHHHHHhhhcCCCceEEEEccceeeeEEEcCCcEEEEEeCCE
Q 034431            1 MPAHMQQHALRFTRSLVDDYYSESSAPKTSRPNPTHLARALKKEFDDAYGPAWHCVVGKSFGSFVTHSPAGFLYFSIDSL   80 (95)
Q Consensus         1 M~~emq~~~i~~~~~a~~~~~~~~~~~~~~~~~~~~iA~~IK~~lD~~yg~~WhcIVG~~Fgs~vth~~~~~i~f~~~~~   80 (95)
                      ||++||++|++++++|+++|++          +.++||..||++||++||++||||||++|||+|||++++||||++|.+
T Consensus        13 M~~~mq~~a~~~a~~al~~f~~----------~~k~iA~~iKkefDkkyG~~WhcivG~~FGs~vThe~g~Fiyf~~g~l   82 (90)
T KOG3430|consen   13 MPEEMQQEAIELARQALEKFNV----------IEKDIAAFIKKEFDKKYGPTWHCIVGRNFGSYVTHETGHFIYFYLGVL   82 (90)
T ss_pred             CChHHHHHHHHHHHHHHHHcCC----------ChHHHHHHHHHHHhhhcCCccEEEEcCCcceEEEeecCcEEEEEeceE
Confidence            9999999999999999999984          379999999999999999999999999999999999999999999999


Q ss_pred             EEEEEeeC
Q 034431           81 SVLLFKTE   88 (95)
Q Consensus        81 ~iLl~ks~   88 (95)
                      +|||||+.
T Consensus        83 ~illfK~~   90 (90)
T KOG3430|consen   83 AILLFKCA   90 (90)
T ss_pred             EEEEEecC
Confidence            99999974

>PLN03058 dynein light chain type 1 family protein; Provisional

Probab=100.00  E-value=7.7e-37  Score=206.94  Aligned_cols=85  Identities=55%  Similarity=0.976  Sum_probs=79.5

Q ss_pred             CCHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCHHHHHHHHHHHhhhcCCCceEEEEccceeeeEEEcCCcEEEEEeCCE
Q 034431            1 MPAHMQQHALRFTRSLVDDYYSESSAPKTSRPNPTHLARALKKEFDDAYGPAWHCVVGKSFGSFVTHSPAGFLYFSIDSL   80 (95)
Q Consensus         1 M~~emq~~~i~~~~~a~~~~~~~~~~~~~~~~~~~~iA~~IK~~lD~~yg~~WhcIVG~~Fgs~vth~~~~~i~f~~~~~   80 (95)
                      ||++||++|+++|.+|+++|+.        ..++++||.+||++||++|||+||||||++|||+|||++++||||++|++
T Consensus        43 M~~emQ~~ave~a~~Al~k~~~--------~~~ekdIA~~IKk~fDkkYG~tWHCIVGk~FGs~VTHe~~~fIyF~ig~~  114 (128)
T PLN03058         43 MPLVLQNRAFSCARDILDAMPG--------KLDSKRLALALKKEFDSAYGPAWHCIVGTSFGSYVTHSTGGFLYFSIDKV  114 (128)
T ss_pred             CCHHHHHHHHHHHHHHHHHccc--------cCCHHHHHHHHHHHHhhhhCCceEEEECCcEEEEEEEcCCcEEEEEECCE
Confidence            9999999999999999999752        12479999999999999999999999999999999999999999999999


Q ss_pred             EEEEEeeCCcccc
Q 034431           81 SVLLFKTEVQLVK   93 (95)
Q Consensus        81 ~iLl~ks~~~~~~   93 (95)
                      +|||||++.+|+.
T Consensus       115 aiLLfKt~~~~~~  127 (128)
T PLN03058        115 YILLFKTAVEPLD  127 (128)
T ss_pred             EEEEEeccCccCC
Confidence            9999999999874

>PTZ00059 dynein light chain; Provisional

Probab=100.00  E-value=1e-36  Score=195.48  Aligned_cols=77  Identities=40%  Similarity=0.865  Sum_probs=74.4

Q ss_pred             CCHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCHHHHHHHHHHHhhhcCCCceEEEEccceeeeEEEcCCcEEEEEeCCE
Q 034431            1 MPAHMQQHALRFTRSLVDDYYSESSAPKTSRPNPTHLARALKKEFDDAYGPAWHCVVGKSFGSFVTHSPAGFLYFSIDSL   80 (95)
Q Consensus         1 M~~emq~~~i~~~~~a~~~~~~~~~~~~~~~~~~~~iA~~IK~~lD~~yg~~WhcIVG~~Fgs~vth~~~~~i~f~~~~~   80 (95)
                      ||++||++|++++.+|+++|+.           +++||++||++||++|||+||||||++|||++||++++||||+++++
T Consensus        14 M~~emq~~a~~~~~~Al~~~~~-----------~kdiA~~IK~~fD~~yg~~WhciVG~~Fgs~vthe~~~~i~F~~~~~   82 (90)
T PTZ00059         14 MSEDMQQDAIDCANQALEKFNI-----------EKDIAAYIKKEFDKKYNPTWHCIVGRNFGSYVTHETKHFIYFYLGQV   82 (90)
T ss_pred             CCHHHHHHHHHHHHHHHHHcCc-----------hHHHHHHHHHHHHhhcCCCCEEEEecCeeEEEEEeCCcEEEEEECCE
Confidence            8999999999999999999864           68999999999999999999999999999999999999999999999


Q ss_pred             EEEEEeeC
Q 034431           81 SVLLFKTE   88 (95)
Q Consensus        81 ~iLl~ks~   88 (95)
                      +|||||++
T Consensus        83 ~vLlfK~~   90 (90)
T PTZ00059         83 AILLFKSG   90 (90)
T ss_pred             EEEEEecC
Confidence            99999985

>PF01221 Dynein_light: Dynein light chain type 1 ; InterPro: IPR001372 Dynein is a multisubunit microtubule-dependent motor enzyme that acts as the force generating protein of eukaryotic cilia and flagella

Probab=100.00  E-value=3.5e-35  Score=187.26  Aligned_cols=77  Identities=47%  Similarity=0.964  Sum_probs=72.0

Q ss_pred             CCHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCHHHHHHHHHHHhhhcCCCceEEEEccceeeeEEEcCCcEEEEEeCCE
Q 034431            1 MPAHMQQHALRFTRSLVDDYYSESSAPKTSRPNPTHLARALKKEFDDAYGPAWHCVVGKSFGSFVTHSPAGFLYFSIDSL   80 (95)
Q Consensus         1 M~~emq~~~i~~~~~a~~~~~~~~~~~~~~~~~~~~iA~~IK~~lD~~yg~~WhcIVG~~Fgs~vth~~~~~i~f~~~~~   80 (95)
                      ||++||++|+++|.+|++++++           ++++|++||+.||++|||+||||||++|||++||+++++++|+++++
T Consensus        13 M~~~~~~~~~~~~~~a~~~~~~-----------~~eiA~~iK~~lD~~yG~~Wh~IVG~~Fg~~~th~~~~~~~f~~~~~   81 (89)
T PF01221_consen   13 MPEEMQEEAIELAKEALKKYQD-----------EKEIAEFIKQELDKKYGPTWHCIVGKSFGSSVTHEPGTFLYFKIGNI   81 (89)
T ss_dssp             S-HHHHHHHHHHHHHHHHHCSS-----------HHHHHHHHHHHHHHHHSS-EEEEEESEEEEEEEEETTEEEEEEETTE
T ss_pred             CCHHHHHHHHHHHHHHHHHCCc-----------HHHHHHHHHHHHhcccCCceEEEECCcEEEEEEEcCCcEEEEEECCE
Confidence            8999999999999999999764           78999999999999999999999999999999999999999999999


Q ss_pred             EEEEEeeC
Q 034431           81 SVLLFKTE   88 (95)
Q Consensus        81 ~iLl~ks~   88 (95)
                      .|||||++
T Consensus        82 ~~li~kt~   89 (89)
T PF01221_consen   82 AFLIFKTQ   89 (89)
T ss_dssp             EEEEEEE-
T ss_pred             EEEEEecC
Confidence            99999985

The cytoplasmic isoform of dynein acts as a motor for the intracellular retrograde motility of vesicles and organelles along microtubules. Dynein is composed of a number of ATP-binding large subunits (see IPR004273 from INTERPRO), intermediate size subunits and small subunits. Among the small subunits, there is a family of highly conserved proteins which make up this family [, ]. Both type 1 (DLC1) and 2 (DLC2) dynein light chains have a similar two-layer alpha-beta core structure consisting of beta-alpha(2)-beta-X-beta(2) [, ].; GO: 0007017 microtubule-based process, 0005875 microtubule associated complex; PDB: 1F95_A 1F96_A 1F3C_A 3P8M_B 2XQQ_C 1RE6_A 1CMI_A 1PWK_A 1PWJ_A 4DS1_C ....

>PF04155 Ground-like: Ground-like domain; InterPro: IPR007284 This group of proteins contain one or more copies of the ground-like domain, which are specific to Caenorhabditis elegans and Caenorhabditis briggsae

Probab=97.22  E-value=0.0064  Score=37.30  Aligned_cols=53  Identities=15%  Similarity=0.280  Sum_probs=45.1

Q ss_pred             CHHHHHHHHHHHhhhcCCCceEEEEc-cceeeeEEEcCCcEEEEEeCCEEEEEEe
Q 034431           33 NPTHLARALKKEFDDAYGPAWHCVVG-KSFGSFVTHSPAGFLYFSIDSLSVLLFK   86 (95)
Q Consensus        33 ~~~~iA~~IK~~lD~~yg~~WhcIVG-~~Fgs~vth~~~~~i~f~~~~~~iLl~k   86 (95)
                      +...+++.|.+.+.++||..+-||++ ++|....... ..|--...++...++|+
T Consensus        23 ~~~~s~~~Iq~~~e~~f~~~f~vIcs~~~Fsy~~~~~-~~~C~~~~~g~~c~af~   76 (76)
T PF04155_consen   23 NLSISKRAIQKAAEKRFGGSFEVICSEGDFSYSTHTD-DLYCKVEKNGVTCLAFA   76 (76)
T ss_pred             CHHHHHHHHHHHHHHHhCCCEEEEEeCCCceeEEecc-cceeeeeeCCEEEEEEC
Confidence            47899999999999999999999996 6676665555 77777889999999985

It has been proposed that the ground-like domain containing proteins may bind and modulate the activity of Patched-like membrane molecules, reminiscent of the modulating activities of neuropeptides [].

>PF05075 DUF684: Protein of unknown function (DUF684); InterPro: IPR007767 This family contains uncharacterised proteins from Caenorhabditis elegans

Probab=82.02  E-value=21  Score=27.55  Aligned_cols=55  Identities=9%  Similarity=0.204  Sum_probs=37.6

Q ss_pred             HHHHHHHHHHHhhhcCC-CceEEEEcc------ceeee--EEEcCCcEEEE-EeCCEEEEEEeeC
Q 034431           34 PTHLARALKKEFDDAYG-PAWHCVVGK------SFGSF--VTHSPAGFLYF-SIDSLSVLLFKTE   88 (95)
Q Consensus        34 ~~~iA~~IK~~lD~~yg-~~WhcIVG~------~Fgs~--vth~~~~~i~f-~~~~~~iLl~ks~   88 (95)
                      -.+.|..||+.||+-.- -.+-+||-.      +...+  ..+....+|.. .-|+..|+||||.
T Consensus       188 n~eKAd~Ik~~Le~ilTnDsFYIiVfd~~~~~~~~~~y~~~~~~~dq~I~s~~rGgcNv~VYRS~  252 (345)
T PF05075_consen  188 NEEKADEIKKKLEKILTNDSFYIIVFDDCSGYDNHYYYGFYDNNEDQYIESFNRGGCNVFVYRSK  252 (345)
T ss_pred             hHHHHHHHHHHHHhhCCCCcEEEEEecccccCCccceeeeccCcccCEEEEEeCCCeEEEEEeeC
Confidence            57899999999999653 467888811      11112  13445566654 5788999999993

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	95
3rjs_A	89	Crystal Structure Of Dynein Light Chain 8a (Dlc8) F		5e-14
1rhw_A	89	The Solution Structure Of The Ph-Induced Monomer Of		9e-14
2pg1_A	91	Structural Analysis Of A Cytoplasmic Dynein Light C		1e-13
1cmi_A	85	Structure Of The Human PinLC8 DIMER WITH A BOUND PE		1e-13
1pwj_A	89	Structure Of The Monomeric 8-Kda Dynein Light Chain		1e-13
1f3c_A	89	Refined Solution Structure Of 8kda Dynein Light Cha		1e-13
3brl_A	89	Crystal Structure Of Lc8 S88e SWA Length = 89		1e-13
3p8m_A	92	Human Dynein Light Chain (Dynll2) In Complex With A		1e-13
1re6_A	94	Localisation Of Dynein Light Chains 1 And 2 And The		1e-13
1yo3_A	102	1.65 Angstrom Structure Of The Dynein Light Chain 1		2e-13
3dvh_A	91	Lc8 Point Mutant K36p Length = 91		2e-13
1pwk_A	91	Structure Of The Monomeric 8-Kda Dynein Light Chain		2e-12
4ds1_A	97	The Structure Of A Yeast Dyn2-Nup159 Complex And Th		1e-10

>pdb|3RJS|A Chain A, Crystal Structure Of Dynein Light Chain 8a (Dlc8) From Toxoplasma Gondii At 1.5 A Resolution Length = 89

Iteration: 1
 Score = 72.4 bits (176), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 35/87 (40%), Positives = 49/87 (56%), Gaps = 11/87 (12%)
Query: 1  MPAHMQQHALRFTRSLVDDYYSESSAPKTSRPNPTHLARALKKEFDDAYGPAWHCVVGKS 60
          MP  +QQ A+      ++ Y  E             +A  +KKEFD  + P WHCVVG++
Sbjct: 13 MPEDLQQDAIDCANQALEKYNIEKD-----------IAAFIKKEFDRKHNPTWHCVVGRN 61
Query: 61 FGSFVTHSPAGFLYFSIDSLSVLLFKT 87
          FGS+VTH    F+YF I  ++VLLFK+
Sbjct: 62 FGSYVTHETHHFIYFYIGQVAVLLFKS 88

>pdb|1RHW|A Chain A, The Solution Structure Of The Ph-Induced Monomer Of Dynein Light Chain Lc8 From Drosophila Length = 89

Iteration: 1
 Score = 72.0 bits (175), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 33/87 (37%), Positives = 48/87 (55%), Gaps = 11/87 (12%)
Query: 1  MPAHMQQHALRFTRSLVDDYYSESSAPKTSRPNPTHLARALKKEFDDAYGPAWHCVVGKS 60
          M   MQQ A+      ++ Y  E             +A  +KKEFD  Y P WHC+VG++
Sbjct: 13 MSEEMQQDAVDCATQALEKYNIEKD-----------IAAYIKKEFDKKYNPTWHCIVGRN 61
Query: 61 FGSFVTHSPAGFLYFSIDSLSVLLFKT 87
          FGS+VTH    F+YF +  +++LLFK+
Sbjct: 62 FGSYVTHETRHFIYFYLGQVAILLFKS 88

>pdb|2PG1|A Chain A, Structural Analysis Of A Cytoplasmic Dynein Light Chain- Intermediate Chain Complex Length = 91

Iteration: 1
 Score = 71.6 bits (174), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 33/87 (37%), Positives = 48/87 (55%), Gaps = 11/87 (12%)
Query: 1  MPAHMQQHALRFTRSLVDDYYSESSAPKTSRPNPTHLARALKKEFDDAYGPAWHCVVGKS 60
          M   MQQ A+      ++ Y  E             +A  +KKEFD  Y P WHC+VG++
Sbjct: 15 MSEEMQQDAVDCATQALEKYNIEKD-----------IAAYIKKEFDKKYNPTWHCIVGRN 63
Query: 61 FGSFVTHSPAGFLYFSIDSLSVLLFKT 87
          FGS+VTH    F+YF +  +++LLFK+
Sbjct: 64 FGSYVTHETRHFIYFYLGQVAILLFKS 90

>pdb|1CMI|A Chain A, Structure Of The Human PinLC8 DIMER WITH A BOUND PEPTIDE Length = 85

Iteration: 1
 Score = 71.6 bits (174), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 32/87 (36%), Positives = 48/87 (55%), Gaps = 11/87 (12%)
Query: 1  MPAHMQQHALRFTRSLVDDYYSESSAPKTSRPNPTHLARALKKEFDDAYGPAWHCVVGKS 60
          M   MQQ ++      ++ Y  E             +A  +KKEFD  Y P WHC+VG++
Sbjct: 9  MSEEMQQDSVECATQALEKYNIEKD-----------IAAHIKKEFDKKYNPTWHCIVGRN 57
Query: 61 FGSFVTHSPAGFLYFSIDSLSVLLFKT 87
          FGS+VTH    F+YF +  +++LLFK+
Sbjct: 58 FGSYVTHETKHFIYFYLGQVAILLFKS 84

>pdb|1PWJ|A Chain A, Structure Of The Monomeric 8-Kda Dynein Light Chain And Mechanism Of Domain Swapped Dimer Assembly Length = 89

Iteration: 1
 Score = 71.6 bits (174), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 33/87 (37%), Positives = 48/87 (55%), Gaps = 11/87 (12%)
Query: 1  MPAHMQQHALRFTRSLVDDYYSESSAPKTSRPNPTHLARALKKEFDDAYGPAWHCVVGKS 60
          M   MQQ A+      ++ Y  E             +A  +KKEFD  Y P WHC+VG++
Sbjct: 13 MSEDMQQDAVDCATQAMEKYNIEKD-----------IAAYIKKEFDKKYNPTWHCIVGRN 61
Query: 61 FGSFVTHSPAGFLYFSIDSLSVLLFKT 87
          FGS+VTH    F+YF +  +++LLFK+
Sbjct: 62 FGSYVTHETKHFIYFYLGQVAILLFKS 88

>pdb|1F3C|A Chain A, Refined Solution Structure Of 8kda Dynein Light Chain (Dlc8) Length = 89

Iteration: 1
 Score = 71.6 bits (174), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 32/87 (36%), Positives = 48/87 (55%), Gaps = 11/87 (12%)
Query: 1  MPAHMQQHALRFTRSLVDDYYSESSAPKTSRPNPTHLARALKKEFDDAYGPAWHCVVGKS 60
          M   MQQ ++      ++ Y  E             +A  +KKEFD  Y P WHC+VG++
Sbjct: 13 MSEEMQQDSVECATQALEKYNIEKD-----------IAAHIKKEFDKKYNPTWHCIVGRN 61
Query: 61 FGSFVTHSPAGFLYFSIDSLSVLLFKT 87
          FGS+VTH    F+YF +  +++LLFK+
Sbjct: 62 FGSYVTHETKHFIYFYLGQVAILLFKS 88

>pdb|3BRL|A Chain A, Crystal Structure Of Lc8 S88e SWA Length = 89

Iteration: 1
 Score = 71.6 bits (174), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 33/86 (38%), Positives = 47/86 (54%), Gaps = 11/86 (12%)
Query: 1  MPAHMQQHALRFTRSLVDDYYSESSAPKTSRPNPTHLARALKKEFDDAYGPAWHCVVGKS 60
          M   MQQ A+      ++ Y  E             +A  +KKEFD  Y P WHC+VG++
Sbjct: 13 MSEEMQQDAVDCATQALEKYNIEKD-----------IAAYIKKEFDKKYNPTWHCIVGRN 61
Query: 61 FGSFVTHSPAGFLYFSIDSLSVLLFK 86
          FGS+VTH    F+YF +  +++LLFK
Sbjct: 62 FGSYVTHETRHFIYFYLGQVAILLFK 87

>pdb|3P8M|A Chain A, Human Dynein Light Chain (Dynll2) In Complex With An In Vitro Evolved Peptide Dimerized By Leucine Zipper Length = 92

Iteration: 1
 Score = 71.2 bits (173), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 33/87 (37%), Positives = 48/87 (55%), Gaps = 11/87 (12%)
Query: 1  MPAHMQQHALRFTRSLVDDYYSESSAPKTSRPNPTHLARALKKEFDDAYGPAWHCVVGKS 60
          M   MQQ A+      ++ Y  E             +A  +KKEFD  Y P WHC+VG++
Sbjct: 16 MSEDMQQDAVDCATQAMEKYNIEKD-----------IAAYIKKEFDKKYNPTWHCIVGRN 64
Query: 61 FGSFVTHSPAGFLYFSIDSLSVLLFKT 87
          FGS+VTH    F+YF +  +++LLFK+
Sbjct: 65 FGSYVTHETKHFIYFYLGQVAILLFKS 91

>pdb|1RE6|A Chain A, Localisation Of Dynein Light Chains 1 And 2 And Their Pro- Apoptotic Ligands Length = 94

Iteration: 1
 Score = 71.2 bits (173), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 33/87 (37%), Positives = 48/87 (55%), Gaps = 11/87 (12%)
Query: 1  MPAHMQQHALRFTRSLVDDYYSESSAPKTSRPNPTHLARALKKEFDDAYGPAWHCVVGKS 60
          M   MQQ A+      ++ Y  E             +A  +KKEFD  Y P WHC+VG++
Sbjct: 18 MSEDMQQDAVDCATQAMEKYNIEKD-----------IAAYIKKEFDKKYNPTWHCIVGRN 66
Query: 61 FGSFVTHSPAGFLYFSIDSLSVLLFKT 87
          FGS+VTH    F+YF +  +++LLFK+
Sbjct: 67 FGSYVTHETKHFIYFYLGQVAILLFKS 93

>pdb|1YO3|A Chain A, 1.65 Angstrom Structure Of The Dynein Light Chain 1 From Plasmodium Falciparum Length = 102

Iteration: 1
 Score = 70.9 bits (172), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 28/51 (54%), Positives = 38/51 (74%)
Query: 37  LARALKKEFDDAYGPAWHCVVGKSFGSFVTHSPAGFLYFSIDSLSVLLFKT 87
           +A  +KKEFD  Y P WHCVVG++FGS+VTH    F+YF I  +++LLFK+
Sbjct: 51  IAAHIKKEFDRKYDPTWHCVVGRNFGSYVTHETKNFIYFYIGQVAILLFKS 101

>pdb|3DVH|A Chain A, Lc8 Point Mutant K36p Length = 91

Iteration: 1
 Score = 70.5 bits (171), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 34/87 (39%), Positives = 50/87 (57%), Gaps = 11/87 (12%)
Query: 1  MPAHMQQHALRFTRSLVDDYYSESSAPKTSRPNPTHLARALKKEFDDAYGPAWHCVVGKS 60
          M   MQQ A+      ++ Y  E        P+   +A  +KKEFD  Y P WHC+VG++
Sbjct: 15 MSEEMQQDAVDCATQALEKYNIE--------PD---IAAYIKKEFDKKYNPTWHCIVGRN 63
Query: 61 FGSFVTHSPAGFLYFSIDSLSVLLFKT 87
          FGS+VTH    F+YF +  +++LLFK+
Sbjct: 64 FGSYVTHETRHFIYFYLGQVAILLFKS 90

>pdb|1PWK|A Chain A, Structure Of The Monomeric 8-Kda Dynein Light Chain And Mechanism Of Domain Swapped Dimer Assembly Length = 91

Iteration: 1
 Score = 67.4 bits (163), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 34/89 (38%), Positives = 48/89 (53%), Gaps = 13/89 (14%)
Query: 1  MPAHMQQHALRFTRSLVDDYYSESSAPKTSRPNPTHLARALKKEFDDAYGPAWHCVVGKS 60
          M   MQQ A+      ++ Y  E             +A  +KKEFD  Y P WHC+VG+S
Sbjct: 13 MSEDMQQDAVDCATQAMEKYNIEKD-----------IAAYIKKEFDKKYNPTWHCIVGRS 61
Query: 61 --FGSFVTHSPAGFLYFSIDSLSVLLFKT 87
            FGS+VTH    F+YF +  +++LLFK+
Sbjct: 62 GNFGSYVTHETKHFIYFYLGQVAILLFKS 90

>pdb|4DS1|A Chain A, The Structure Of A Yeast Dyn2-Nup159 Complex And The Molecular Basis For The Dynein Light Chain - Nuclear Pore Interaction Length = 97

Iteration: 1
 Score = 61.2 bits (147), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 30/83 (36%), Positives = 45/83 (54%), Gaps = 11/83 (13%)
Query: 5  MQQHALRFTRSLVDDYYSESSAPKTSRPNPTHLARALKKEFDDAYGPAWHCVVGKSFGSF 64
          +++  L  ++  +D Y  E             +A  +KK+ D  YG  WH +VGK+FGS+
Sbjct: 25 LKEDILTISKDALDKYQLERD-----------IAGTVKKQLDVKYGNTWHVIVGKNFGSY 73
Query: 65 VTHSPAGFLYFSIDSLSVLLFKT 87
          VTH    F+YF I  L+ L+FKT
Sbjct: 74 VTHEKGHFVYFYIGPLAFLVFKT 96

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	95
4ds1_A	97	Dynein light chain 1, cytoplasmic; dynein light ch	2e-29
1yo3_A	102	Dynein light chain 1; structural genomics consorti	4e-28

>4ds1_A Dynein light chain 1, cytoplasmic; dynein light chain fold, peptide binding, nucle structural protein-transport protein complex; 1.85A {Saccharomyces cerevisiae} Length = 97

 Score = 99.8 bits (249), Expect = 2e-29
 Identities = 29/87 (33%), Positives = 45/87 (51%), Gaps = 11/87 (12%)

Query: 1  MPAHMQQHALRFTRSLVDDYYSESSAPKTSRPNPTHLARALKKEFDDAYGPAWHCVVGKS 60
          +   +++  L  ++  +D Y                +A  +KK+ D  YG  WH +VGK+
Sbjct: 21 ITDKLKEDILTISKDALDKY-----------QLERDIAGTVKKQLDVKYGNTWHVIVGKN 69

Query: 61 FGSFVTHSPAGFLYFSIDSLSVLLFKT 87
          FGS+VTH    F+YF I  L+ L+FKT
Sbjct: 70 FGSYVTHEKGHFVYFYIGPLAFLVFKT 96

>1yo3_A Dynein light chain 1; structural genomics consortium, microtub malaria, SGC, transport protein; 1.65A {Plasmodium falciparum} PDB: 1f3c_A 1f95_A 1f96_A 1rhw_A 2p1k_A 2p2t_A 3bri_A 3e2b_A 3fm7_E 3glw_A 3dvt_A 2pg1_A 3p8m_A 1pwj_A 2xqq_A 3brl_A 1re6_A 1cmi_A 3dvh_A 3dvp_A ... Length = 102

 Score = 96.8 bits (241), Expect = 4e-28
 Identities = 33/87 (37%), Positives = 45/87 (51%), Gaps = 11/87 (12%)

Query: 1   MPAHMQQHALRFTRSLVDDYYSESSAPKTSRPNPTHLARALKKEFDDAYGPAWHCVVGKS 60
           M   MQ  A+      +  Y                +A  +KKEFD  Y P WHCVVG++
Sbjct: 26  MTEEMQIDAIDCANQALQKY-----------NVEKDIAAHIKKEFDRKYDPTWHCVVGRN 74

Query: 61  FGSFVTHSPAGFLYFSIDSLSVLLFKT 87
           FGS+VTH    F+YF I  +++LLFK+
Sbjct: 75  FGSYVTHETKNFIYFYIGQVAILLFKS 101

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	95
3rjs_A	89	Dynein light chain motor protein; parasite, LC8, D	100.0
4ds1_A	97	Dynein light chain 1, cytoplasmic; dynein light ch	100.0
1yo3_A	102	Dynein light chain 1; structural genomics consorti	100.0

>3rjs_A Dynein light chain motor protein; parasite, LC8, DLC8, TGDLC8, LIG PIN, DLC1, dynll1, transport protein; 1.50A {Toxoplasma gondii} PDB: 1pwj_A 2xqq_A 1re6_A 3p8m_A 3dvt_A 2pg1_A 1rhw_A 2p1k_A 2p2t_A 3bri_A 3e2b_A 3fm7_E 3glw_A 3brl_A 3dvh_A 3dvp_A 1pwk_A 1f3c_A 1f95_A 1f96_A ...

Probab=100.00  E-value=6.8e-39  Score=204.31  Aligned_cols=77  Identities=44%  Similarity=0.860  Sum_probs=74.7

Q ss_pred             CCHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCHHHHHHHHHHHhhhcCCCceEEEEccceeeeEEEcCCcEEEEEeCCE
Q 034431            1 MPAHMQQHALRFTRSLVDDYYSESSAPKTSRPNPTHLARALKKEFDDAYGPAWHCVVGKSFGSFVTHSPAGFLYFSIDSL   80 (95)
Q Consensus         1 M~~emq~~~i~~~~~a~~~~~~~~~~~~~~~~~~~~iA~~IK~~lD~~yg~~WhcIVG~~Fgs~vth~~~~~i~f~~~~~   80 (95)
                      ||++||++|+++|.+|+++|+.           +++||++||++||++|||+||||||++|||+|||++++||||++|++
T Consensus        13 M~~emq~~a~~~a~~al~~~~~-----------ek~iA~~IK~~fD~kyg~~WhciVG~~Fgs~vthe~~~fiyF~~g~~   81 (89)
T 3rjs_A           13 MPEDLQQDAIDCANQALEKYNI-----------EKDIAAFIKKEFDRKHNPTWHCVVGRNFGSYVTHETHHFIYFYIGQV   81 (89)
T ss_dssp             SCHHHHHHHHHHHHHHHHHCCS-----------HHHHHHHHHHHHHHHHCSCCEEEEESSCCCCCCEEEEEEEEEEETTE
T ss_pred             CCHHHHHHHHHHHHHHHHHCCc-----------HHHHHHHHHHHHhcccCCCCEEEEecCeeEEEEEcCCcEEEEEECCE
Confidence            9999999999999999999874           68999999999999999999999999999999999999999999999


Q ss_pred             EEEEEeeC
Q 034431           81 SVLLFKTE   88 (95)
Q Consensus        81 ~iLl~ks~   88 (95)
                      +|||||++
T Consensus        82 ~iLlfKtg   89 (89)
T 3rjs_A           82 AVLLFKSG   89 (89)
T ss_dssp             EEEEEEEC
T ss_pred             EEEEEecC
Confidence            99999986

>4ds1_A Dynein light chain 1, cytoplasmic; dynein light chain fold, peptide binding, nucle structural protein-transport protein complex; 1.85A {Saccharomyces cerevisiae}

Probab=100.00  E-value=3e-38  Score=204.23  Aligned_cols=77  Identities=38%  Similarity=0.773  Sum_probs=74.7

Q ss_pred             CCHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCHHHHHHHHHHHhhhcCCCceEEEEccceeeeEEEcCCcEEEEEeCCE
Q 034431            1 MPAHMQQHALRFTRSLVDDYYSESSAPKTSRPNPTHLARALKKEFDDAYGPAWHCVVGKSFGSFVTHSPAGFLYFSIDSL   80 (95)
Q Consensus         1 M~~emq~~~i~~~~~a~~~~~~~~~~~~~~~~~~~~iA~~IK~~lD~~yg~~WhcIVG~~Fgs~vth~~~~~i~f~~~~~   80 (95)
                      ||++||++|+++|.+|+++|++           +++||++||++||++|||+||||||++|||+|||++++||||++|++
T Consensus        21 M~~emq~~a~~~a~~al~~~~~-----------ek~iA~~IK~~fDkkyG~~WhcIVG~~Fgs~vThe~~~fiyF~~g~~   89 (97)
T 4ds1_A           21 ITDKLKEDILTISKDALDKYQL-----------ERDIAGTVKKQLDVKYGNTWHVIVGKNFGSYVTHEKGHFVYFYIGPL   89 (97)
T ss_dssp             ECHHHHHHHHHHHHHHHHHCSS-----------HHHHHHHHHHHHHHHHCSCEEEEEEEEEEEEEEECTTEEEEEEETTE
T ss_pred             CCHHHHHHHHHHHHHHHHHcCC-----------HHHHHHHHHHHHhCccCCCCEEEEccCccEEEEEcCCcEEEEEECCE
Confidence            8999999999999999999864           78999999999999999999999999999999999999999999999


Q ss_pred             EEEEEeeC
Q 034431           81 SVLLFKTE   88 (95)
Q Consensus        81 ~iLl~ks~   88 (95)
                      +|||||++
T Consensus        90 aiLlfKtg   97 (97)
T 4ds1_A           90 AFLVFKTA   97 (97)
T ss_dssp             EEEEEECC
T ss_pred             EEEEEecC
Confidence            99999986

>1yo3_A Dynein light chain 1; structural genomics consortium, microtub malaria, SGC, transport protein; 1.65A {Plasmodium falciparum} PDB: 1f3c_A 1f95_A 1f96_A 1rhw_A 2p1k_A 2p2t_A 3bri_A 3e2b_A 3fm7_E 3glw_A 3dvt_A 2pg1_A 3p8m_A 1pwj_A 2xqq_A 3brl_A 1re6_A 1cmi_A 3dvh_A 3dvp_A ...

Probab=100.00  E-value=8.6e-38  Score=203.74  Aligned_cols=77  Identities=43%  Similarity=0.867  Sum_probs=74.6

Q ss_pred             CCHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCHHHHHHHHHHHhhhcCCCceEEEEccceeeeEEEcCCcEEEEEeCCE
Q 034431            1 MPAHMQQHALRFTRSLVDDYYSESSAPKTSRPNPTHLARALKKEFDDAYGPAWHCVVGKSFGSFVTHSPAGFLYFSIDSL   80 (95)
Q Consensus         1 M~~emq~~~i~~~~~a~~~~~~~~~~~~~~~~~~~~iA~~IK~~lD~~yg~~WhcIVG~~Fgs~vth~~~~~i~f~~~~~   80 (95)
                      ||++||++|+++|.+|+++|++           +++||++||++||++|||+||||||++|||+|||++++||||++|++
T Consensus        26 M~~emq~~a~~~a~~Al~k~~~-----------ekdiA~~IK~~fDkkyG~~WHcIVG~~FGs~vThe~~~fiyF~~g~~   94 (102)
T 1yo3_A           26 MTEEMQIDAIDCANQALQKYNV-----------EKDIAAHIKKEFDRKYDPTWHCVVGRNFGSYVTHETKNFIYFYIGQV   94 (102)
T ss_dssp             SCHHHHHHHHHHHHHHHHHCSS-----------HHHHHHHHHHHHHHHHCSCEEEEESSSCCCEEESCCCEEEEEEETTE
T ss_pred             CCHHHHHHHHHHHHHHHHHcCc-----------HHHHHHHHHHHHhhhcCCCCEEEEccCeeEEEEEeCCcEEEEEECCE
Confidence            9999999999999999999864           78999999999999999999999999999999999999999999999


Q ss_pred             EEEEEeeC
Q 034431           81 SVLLFKTE   88 (95)
Q Consensus        81 ~iLl~ks~   88 (95)
                      +|||||++
T Consensus        95 aiLlfKt~  102 (102)
T 1yo3_A           95 AILLFKSG  102 (102)
T ss_dssp             EEEEEECC
T ss_pred             EEEEEecC
Confidence            99999985

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	95
d3e2ba1	87	d.39.1.1 (A:3-89) Dynein light chain 1 (DLC1) {Fru	3e-28

>d3e2ba1 d.39.1.1 (A:3-89) Dynein light chain 1 (DLC1) {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 87

class: Alpha and beta proteins (a+b)
fold: DLC
superfamily: DLC
family: DLC
domain: Dynein light chain 1 (DLC1)
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 95.6 bits (238), Expect = 3e-28
 Identities = 33/87 (37%), Positives = 48/87 (55%), Gaps = 11/87 (12%)

Query: 1  MPAHMQQHALRFTRSLVDDYYSESSAPKTSRPNPTHLARALKKEFDDAYGPAWHCVVGKS 60
          M   MQQ A+      ++ Y  E             +A  +KKEFD  Y P WHC+VG++
Sbjct: 11 MSEEMQQDAVDCATQALEKYNIE-----------KDIAAYIKKEFDKKYNPTWHCIVGRN 59

Query: 61 FGSFVTHSPAGFLYFSIDSLSVLLFKT 87
          FGS+VTH    F+YF +  +++LLFK+
Sbjct: 60 FGSYVTHETRHFIYFYLGQVAILLFKS 86

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	95
d3e2ba1	87	Dynein light chain 1 (DLC1) {Fruit fly (Drosophila	100.0
d2nn6d2	89	Exosome complex exonuclease RRP46 {Human (Homo sap	81.24

>d3e2ba1 d.39.1.1 (A:3-89) Dynein light chain 1 (DLC1) {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a+b)
fold: DLC
superfamily: DLC
family: DLC
domain: Dynein light chain 1 (DLC1)
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=100.00  E-value=4.1e-38  Score=198.46  Aligned_cols=77  Identities=42%  Similarity=0.869  Sum_probs=74.8

Q ss_pred             CCHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCHHHHHHHHHHHhhhcCCCceEEEEccceeeeEEEcCCcEEEEEeCCE
Q 034431            1 MPAHMQQHALRFTRSLVDDYYSESSAPKTSRPNPTHLARALKKEFDDAYGPAWHCVVGKSFGSFVTHSPAGFLYFSIDSL   80 (95)
Q Consensus         1 M~~emq~~~i~~~~~a~~~~~~~~~~~~~~~~~~~~iA~~IK~~lD~~yg~~WhcIVG~~Fgs~vth~~~~~i~f~~~~~   80 (95)
                      ||+|||++|+++|.+|+++|++           .+++|++||++||++|||+||||||++|||++||++++|+||++|++
T Consensus        11 M~~em~~~a~~~~~~al~~~~~-----------~~diA~~IK~~~D~kyg~~WhcIVG~~Fgs~vthe~~~~i~F~~g~~   79 (87)
T d3e2ba1          11 MSEEMQQDAVDCATQALEKYNI-----------EKDIAAYIKKEFDKKYNPTWHCIVGRNFGSYVTHETRHFIYFYLGQV   79 (87)
T ss_dssp             ECHHHHHHHHHHHHHHHHHCCS-----------HHHHHHHHHHHHHHHHCSCEEEEEESSCEEEEEEETTEEEEEEETTE
T ss_pred             CCHHHHHHHHHHHHHHHHHcCc-----------HHHHHHHHHHHHHHhhCCccEEEECCCeeEEEEecCCcEEEEEECCE
Confidence            8999999999999999999874           68999999999999999999999999999999999999999999999


Q ss_pred             EEEEEeeC
Q 034431           81 SVLLFKTE   88 (95)
Q Consensus        81 ~iLl~ks~   88 (95)
                      +|||||+|
T Consensus        80 ~~Ll~Ktg   87 (87)
T d3e2ba1          80 AILLFKSG   87 (87)
T ss_dssp             EEEEEECC
T ss_pred             EEEEEecC
Confidence            99999986

>d2nn6d2 d.101.1.1 (D:147-235) Exosome complex exonuclease RRP46 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ribonuclease PH domain 2-like
superfamily: Ribonuclease PH domain 2-like
family: Ribonuclease PH domain 2-like
domain: Exosome complex exonuclease RRP46
species: Human (Homo sapiens) [TaxId: 9606]

Probab=81.24  E-value=1.5  Score=24.35  Aligned_cols=34  Identities=12%  Similarity=0.192  Sum_probs=25.9

Q ss_pred             CCHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCHHHHHHHHHHHhhhcCCC
Q 034431            1 MPAHMQQHALRFTRSLVDDYYSESSAPKTSRPNPTHLARALKKEFDDAYGP   51 (95)
Q Consensus         1 M~~emq~~~i~~~~~a~~~~~~~~~~~~~~~~~~~~iA~~IK~~lD~~yg~   51 (95)
                      |+++.-.++++.|+++..+                 |.+.+|+.|.++++.
T Consensus        55 ~s~~~~~~~l~~a~~~~~~-----------------I~~~~r~~l~k~~~k   88 (89)
T d2nn6d2          55 YSDTELQQCLAAAQAASQH-----------------VFRFYRESLQRRYSK   88 (89)
T ss_dssp             CCHHHHHHHHHHHHHHHHH-----------------HHHHHHHHHHHHTCC
T ss_pred             cCHHHHHHHHHHHHHHHHH-----------------HHHHHHHHHHHHhcC
Confidence            4667777888888888765                 778888888887765