Citrus Sinensis ID: 034437

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-----
Protein Sequence
MALNNGIRSVSKLLASSQSLVPSSVNRAFHSTGVKRMGGHGHDEPYYLHAKHMYNLDRMKHQGLKMSLAVFSAFSIGVGVPIYAVIFQQRKTASG
Secondary Structure (PSIPRED)
ccccHHHHHHHHHHHHccccccccccccEEccccccccccccccccEEHHHHHccccHHccccEEEEEEEEEEEEEcccccEEEEEEEEEccccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHHHHHHccHHHccccccccccccccHccccccccccEEEEHHHHccHHHHHHccccEEHHHHHHHHHccEEEEEEEEEEEcccccc
Coil and Loop (DISEMBL)
MALNNGIRSVSKLLASSqslvpssvnrafhstgvkrmgghghdepyylhaKHMYNLDRMKHQGLKMSLAVFSAFSIGVGVPIYAVIFQQRKTASG
Flexible Loop (DISEMBL)
MALNNGIRSVSKLLASSQSLVPSSVNRAFHSTGVKRMGGHGHDEPYYLHAKHMYNLDRMKHQGLKMSLAVFSAFSIGVGVPIYAVIFQQRKTASG
Low Complexity Region (SEG)
MALNNGIRSVSKLLASSQSLVPSSVNRAFHSTGVKRMGGHGHDEPYYLHAKHMYNLDRMKHQGLKMSLAVFSAFSIGVGVPIYAVIFQQRKTASG
Disordered region (IsUnstruct)
****************************************GHDEPYYLHAKHMYNLDRMKHQGLKMSLAVFSAFSIGVGVPIYAVIFQ*******
Disordered Region (DISOPRED)
****************************************GHDEPYYLHAKHMYNLDRMKHQGLKMSLAVFSAFSIGVGVPIYAVIF*QR*****
Disordered Region (DISEMBL)
********SVSKLLASSQSLVPSSVNRAFHSTGVKRMGGHGHDEPYYLHAKHMYNLDRMKHQGLKMSLAVFSAFSIGVGVPIYAVIFQQRKTASG
Disordered Region (DISPRO)
*****************************************HDEPYYLHAKHMYNLDRMKHQGLKMSLAVFSAFSIGVGVPIYAVIFQQRK****
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MALNNGIRSVSKLLASSQSLVPSSVNRAFHSTGVKRMGGHGHDEPYYLHAKHMYNLDRMKHQGLKMSLAVFSAFSIGVGVPIYAVIFQQRKTASG
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	95
224145162	96	predicted protein [Populus trichocarpa]	1.0	0.989	0.781	1e-36
449441746	97	PREDICTED: uncharacterized protein LOC10	1.0	0.979	0.742	8e-36
224135947	98	predicted protein [Populus trichocarpa]	1.0	0.969	0.744	1e-35
449490108	97	PREDICTED: uncharacterized protein LOC10	1.0	0.979	0.742	2e-35
388497222	96	unknown [Lotus japonicus]	1.0	0.989	0.781	3e-34
351725731	96	uncharacterized protein LOC100500266 [Gl	0.989	0.979	0.789	8e-34
351722743	96	uncharacterized protein LOC100499985 [Gl	0.989	0.979	0.789	2e-33
18409974	97	uncharacterized protein [Arabidopsis tha	1.0	0.979	0.731	3e-33
388492200	96	unknown [Medicago truncatula]	1.0	0.989	0.770	2e-32
388510984	98	unknown [Lotus japonicus]	1.0	0.969	0.765	1e-31

>gi|224145162|ref|XP_002325548.1| predicted protein [Populus trichocarpa] gi|118481348|gb|ABK92617.1| unknown [Populus trichocarpa] gi|222862423|gb|EEE99929.1| predicted protein [Populus trichocarpa]

 Score =  156 bits (395), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 75/96 (78%), Positives = 85/96 (88%), Gaps = 1/96 (1%)

Query: 1  MALNNGIRSVSKLLASSQSLVPSSVNRAFHSTGVKRMGG-HGHDEPYYLHAKHMYNLDRM 59
          MALNNG+RS SKL  +S+SL+  SVNR  HSTGVKRMGG HGHDEP+YLHAKHMYNLDRM
Sbjct: 1  MALNNGLRSASKLFTASESLLSKSVNRGIHSTGVKRMGGGHGHDEPFYLHAKHMYNLDRM 60

Query: 60 KHQGLKMSLAVFSAFSIGVGVPIYAVIFQQRKTASG 95
          K+Q +KM +AVF+AFSIGV VPIYAVIFQQ+KTASG
Sbjct: 61 KYQKIKMPIAVFTAFSIGVLVPIYAVIFQQKKTASG 96

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449441746|ref|XP_004138643.1| PREDICTED: uncharacterized protein LOC101217188 [Cucumis sativus]

 Score =  154 bits (388), Expect = 8e-36,   Method: Compositional matrix adjust.
 Identities = 72/97 (74%), Positives = 84/97 (86%), Gaps = 2/97 (2%)

Query: 1  MALNNGIRSVSKLLASSQSLVPSSVNRAFHSTGVKRMGGH--GHDEPYYLHAKHMYNLDR 58
          M+L+NG++S +KLL SS+ L+  S NR FHSTGVKRMGGH  GHDEPYYLHAKHMYNLDR
Sbjct: 1  MSLSNGVKSCAKLLKSSEPLLEKSANRGFHSTGVKRMGGHAHGHDEPYYLHAKHMYNLDR 60

Query: 59 MKHQGLKMSLAVFSAFSIGVGVPIYAVIFQQRKTASG 95
          MK+Q L M+L V +AFSIGVGVPIYAV+FQQ+KTASG
Sbjct: 61 MKYQKLTMTLGVLTAFSIGVGVPIYAVVFQQKKTASG 97

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224135947|ref|XP_002327343.1| predicted protein [Populus trichocarpa] gi|222835713|gb|EEE74148.1| predicted protein [Populus trichocarpa]

 Score =  153 bits (387), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 73/98 (74%), Positives = 83/98 (84%), Gaps = 3/98 (3%)

Query: 1  MALNNGIRSVSKLLASSQSLVPSSVNRAFHSTGVKRMGG---HGHDEPYYLHAKHMYNLD 57
          MALNNG+RS  KL  +S+SL+  SVNR  HSTGVKRMGG   HGHDEP+YLHAKHMYNLD
Sbjct: 1  MALNNGLRSACKLFTASESLLSKSVNRCIHSTGVKRMGGGHAHGHDEPFYLHAKHMYNLD 60

Query: 58 RMKHQGLKMSLAVFSAFSIGVGVPIYAVIFQQRKTASG 95
          RMK+Q +KM LAV +AFSIGV VP+YAVIFQQ+KTASG
Sbjct: 61 RMKYQKIKMPLAVLTAFSIGVIVPVYAVIFQQKKTASG 98

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449490108|ref|XP_004158510.1| PREDICTED: uncharacterized protein LOC101229069 [Cucumis sativus]

 Score =  152 bits (385), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 72/97 (74%), Positives = 84/97 (86%), Gaps = 2/97 (2%)

Query: 1  MALNNGIRSVSKLLASSQSLVPSSVNRAFHSTGVKRMGGH--GHDEPYYLHAKHMYNLDR 58
          M+L+NG++S +KLL SS+ L+  S NR FHSTGVKRMGGH  GHDEPYYLHAKHMYNLDR
Sbjct: 1  MSLSNGVKSCAKLLKSSEPLLVKSANRGFHSTGVKRMGGHAHGHDEPYYLHAKHMYNLDR 60

Query: 59 MKHQGLKMSLAVFSAFSIGVGVPIYAVIFQQRKTASG 95
          MK+Q L M+L V +AFSIGVGVPIYAV+FQQ+KTASG
Sbjct: 61 MKYQKLTMTLGVLTAFSIGVGVPIYAVVFQQKKTASG 97

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388497222|gb|AFK36677.1| unknown [Lotus japonicus]

 Score =  149 bits (375), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 75/96 (78%), Positives = 89/96 (92%), Gaps = 1/96 (1%)

Query: 1  MALNNGIRSVSKLLASSQSLVPSSVNRAFHSTGVKRMGG-HGHDEPYYLHAKHMYNLDRM 59
          MAL NG+RS +KL+ASS+S + +SV+R FHSTG+KRMGG HGHDEPYY+HAKHMYNLDRM
Sbjct: 1  MALTNGLRSAAKLIASSESSLSNSVSRGFHSTGMKRMGGGHGHDEPYYMHAKHMYNLDRM 60

Query: 60 KHQGLKMSLAVFSAFSIGVGVPIYAVIFQQRKTASG 95
          K+QGLKMSLAVF+AFSIGV +P+YAVIFQQ+KTASG
Sbjct: 61 KYQGLKMSLAVFTAFSIGVAIPVYAVIFQQKKTASG 96

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351725731|ref|NP_001235567.1| uncharacterized protein LOC100500266 [Glycine max] gi|255629873|gb|ACU15287.1| unknown [Glycine max]

 Score =  147 bits (371), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 75/95 (78%), Positives = 86/95 (90%), Gaps = 1/95 (1%)

Query: 1  MALNNGIRSVSKLLASSQSLVPSSVNRAFHSTGVKRMGG-HGHDEPYYLHAKHMYNLDRM 59
          MA NN +RS +KL+ASS+S   +SV+R FHSTG+KRMGG HGHDEPYYLHAKHMYNLD+M
Sbjct: 1  MAFNNALRSAAKLVASSESSFSNSVSRGFHSTGMKRMGGGHGHDEPYYLHAKHMYNLDKM 60

Query: 60 KHQGLKMSLAVFSAFSIGVGVPIYAVIFQQRKTAS 94
          KHQGLKMSLAVF+AFSIGV VP+YAVIFQQ+KTAS
Sbjct: 61 KHQGLKMSLAVFTAFSIGVAVPVYAVIFQQKKTAS 95

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351722743|ref|NP_001235207.1| uncharacterized protein LOC100499985 [Glycine max] gi|255628315|gb|ACU14502.1| unknown [Glycine max]

 Score =  146 bits (369), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 75/95 (78%), Positives = 87/95 (91%), Gaps = 1/95 (1%)

Query: 1  MALNNGIRSVSKLLASSQSLVPSSVNRAFHSTGVKRMGG-HGHDEPYYLHAKHMYNLDRM 59
          MA +N +RS +KL+ASS+S + +SV+R FHSTG+KRMGG HGHDEPYYLHAKHMYNLDRM
Sbjct: 1  MAFSNALRSAAKLVASSESSLSNSVSRGFHSTGMKRMGGGHGHDEPYYLHAKHMYNLDRM 60

Query: 60 KHQGLKMSLAVFSAFSIGVGVPIYAVIFQQRKTAS 94
          KHQGLKMSLAVF+AFSIGV VP+YAVIFQQ+KTAS
Sbjct: 61 KHQGLKMSLAVFTAFSIGVAVPVYAVIFQQKKTAS 95

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18409974|ref|NP_565031.1| uncharacterized protein [Arabidopsis thaliana] gi|12322207|gb|AAG51143.1|AC069273_14 unknown protein [Arabidopsis thaliana] gi|18253029|gb|AAL62441.1| unknown protein [Arabidopsis thaliana] gi|22136474|gb|AAM91315.1| unknown protein [Arabidopsis thaliana] gi|332197143|gb|AEE35264.1| uncharacterized protein [Arabidopsis thaliana]

 Score =  145 bits (366), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 71/97 (73%), Positives = 83/97 (85%), Gaps = 2/97 (2%)

Query: 1  MALNNGIRSVSKLLASSQSLVPSSVNRAFHSTGVKRM--GGHGHDEPYYLHAKHMYNLDR 58
          MAL+  IRSVSK++ASS++ V  SV R+FHSTGVK+M  GGHG  + YYLHAKHMYNLDR
Sbjct: 1  MALSTSIRSVSKIIASSEASVSRSVTRSFHSTGVKKMSGGGHGGYDEYYLHAKHMYNLDR 60

Query: 59 MKHQGLKMSLAVFSAFSIGVGVPIYAVIFQQRKTASG 95
          MK+Q LKMSL VF+AFSIGVGVPI+AV+FQQRKT SG
Sbjct: 61 MKYQALKMSLGVFTAFSIGVGVPIFAVVFQQRKTQSG 97

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388492200|gb|AFK34166.1| unknown [Medicago truncatula]

 Score =  142 bits (359), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 74/96 (77%), Positives = 86/96 (89%), Gaps = 1/96 (1%)

Query: 1  MALNNGIRSVSKLLASSQSLVPSSVNRAFHSTGVKRMGG-HGHDEPYYLHAKHMYNLDRM 59
          MALNNG+RS +KL+ASS+S +  SV+R FHSTGVKRMGG HGH EP Y+HA HMYNLD+M
Sbjct: 1  MALNNGLRSAAKLIASSESSISKSVSRGFHSTGVKRMGGGHGHSEPEYMHAYHMYNLDKM 60

Query: 60 KHQGLKMSLAVFSAFSIGVGVPIYAVIFQQRKTASG 95
          K+QGLKMSLAVF+AFSIGV VP+YAVIFQQ+KTASG
Sbjct: 61 KYQGLKMSLAVFTAFSIGVAVPVYAVIFQQKKTASG 96

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388510984|gb|AFK43558.1| unknown [Lotus japonicus]

 Score =  140 bits (352), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 75/98 (76%), Positives = 83/98 (84%), Gaps = 3/98 (3%)

Query: 1  MALNNGIRSVSKLLASSQSLVP--SSVNRAFHSTGVKRMGG-HGHDEPYYLHAKHMYNLD 57
          MA NN  RS +KLL+SS   +   + V R FHSTGVKRMGG HGHDEPYY+HAKHMYNLD
Sbjct: 1  MAFNNTFRSAAKLLSSSGPSLSKSAPVGRGFHSTGVKRMGGGHGHDEPYYMHAKHMYNLD 60

Query: 58 RMKHQGLKMSLAVFSAFSIGVGVPIYAVIFQQRKTASG 95
          RMKHQGLKMSLAVF+AFSIGV VP+YAVIFQQ+KTASG
Sbjct: 61 RMKHQGLKMSLAVFTAFSIGVAVPVYAVIFQQKKTASG 98

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	95
TAIR|locus:2030311	97	AT1G72020 "AT1G72020" [Arabido	1.0	0.979	0.731	8.5e-33

TAIR|locus:2030311 AT1G72020 "AT1G72020" [Arabidopsis thaliana (taxid:3702)]

 Score = 358 (131.1 bits), Expect = 8.5e-33, P = 8.5e-33
 Identities = 71/97 (73%), Positives = 83/97 (85%)

Query:     1 MALNNGIRSVSKLLASSQSLVPSSVNRAFHSTGVKRM--GGHGHDEPYYLHAKHMYNLDR 58
             MAL+  IRSVSK++ASS++ V  SV R+FHSTGVK+M  GGHG  + YYLHAKHMYNLDR
Sbjct:     1 MALSTSIRSVSKIIASSEASVSRSVTRSFHSTGVKKMSGGGHGGYDEYYLHAKHMYNLDR 60

Query:    59 MKHQGLKMSLAVFSAFSIGVGVPIYAVIFQQRKTASG 95
             MK+Q LKMSL VF+AFSIGVGVPI+AV+FQQRKT SG
Sbjct:    61 MKYQALKMSLGVFTAFSIGVGVPIFAVVFQQRKTQSG 97


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.321   0.132   0.380    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0       95        95   0.00091  102 3  11 22  0.47    29
                                                     29  0.43    31


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  455 (48 KB)
  Total size of DFA:  90 KB (2069 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  10.12u 0.10s 10.22t   Elapsed:  00:00:00
  Total cpu time:  10.12u 0.10s 10.22t   Elapsed:  00:00:00
  Start:  Thu May  9 15:18:54 2013   End:  Thu May  9 15:18:54 2013

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=RCA

GO:0009853 "photorespiration" evidence=RCA

GO:0051788 "response to misfolded protein" evidence=RCA

GO:0080129 "proteasome core complex assembly" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: estExt_Genewise1_v1.C_LG_XIX2037 SubName- Full=Putative uncharacterized protein; (97 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	95
PF02935	65	COX7C: Cytochrome c oxidase subunit VIIc; InterPro	97.97
KOG4527	76	consensus Cytochrome c oxidase, subunit VIIc/COX8	96.73
cd00929	46	Cyt_c_Oxidase_VIIc Cytochrome c oxidase subunit VI	95.69

>PF02935 COX7C: Cytochrome c oxidase subunit VIIc; InterPro: IPR004202 Cytochrome c oxidase (1

Probab=97.97  E-value=3.4e-07  Score=58.99  Aligned_cols=55  Identities=25%  Similarity=0.393  Sum_probs=34.6

Q ss_pred             ccccccceeccccccccCCCCCCccchhhhhhcccccccccchhhhhhhhhhhhcccccceEEEEEeeecc
Q 034437           22 PSSVNRAFHSTGVKRMGGHGHDEPYYLHAKHMYNLDRMKHQGLKMSLAVFSAFSIGVGVPIYAVIFQQRKT   92 (95)
Q Consensus        22 ~~~~sR~fhsTg~krmggHgHdeP~YiHAkhMYnl~~mK~qklk~~lav~~a~~iGv~vPv~Av~FQqkKT   92 (95)
                      ..+..|++|+    --+|-+++.|        +|.   ++ |..+++..++++++|+++|+++|.+|.+|+
T Consensus        11 ~~~~~R~~~~----~~~gp~~NLP--------F~~---~n-K~~~~~~~~~f~g~GF~~PF~~~~~Ql~Ks   65 (65)
T PF02935_consen   11 FTSAVRSSHS----YPEGPYSNLP--------FNV---KN-KWPFAVKFWGFFGSGFAAPFLIVRWQLKKS   65 (65)
T ss_dssp             --------------S--STTTSSS--------S-----SS-HHHHHHHHHHHHHHHHHHHHHHHHHHHTT-
T ss_pred             HHHHHHccCC----CCCCCCCccc--------ccC---cc-hhHHHHHHHHHHHHHHHhHHHHHHHHHhcC
Confidence            3345566655    1136668888        665   44 788889999999999999999999999985

9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. This entry represents cytochrome C subunit 7C. The yeast member of this family is called cytochrome C subunit 8P.; GO: 0004129 cytochrome-c oxidase activity; PDB: 3ABL_Y 3ABM_L 2EIM_L 3ASO_L 3AG3_Y 3AG1_Y 1OCC_Y 2DYS_Y 2OCC_L 1V54_L ....

>KOG4527 consensus Cytochrome c oxidase, subunit VIIc/COX8 [Energy production and conversion]

Probab=96.73  E-value=0.00082  Score=46.04  Aligned_cols=31  Identities=29%  Similarity=0.400  Sum_probs=27.6

Q ss_pred             chhhhhhhhhhhhcccccceEEEEEeeeccc
Q 034437           63 GLKMSLAVFSAFSIGVGVPIYAVIFQQRKTA   93 (95)
Q Consensus        63 klk~~lav~~a~~iGv~vPv~Av~FQqkKT~   93 (95)
                      |..++..-+++++||+++|+++|-.|.+|++
T Consensus        45 Kw~~aak~~~ffaigFa~PFlvv~~QL~K~~   75 (76)
T KOG4527|consen   45 KWTYAAKHFGFFAIGFAVPFLVVRHQLLKSG   75 (76)
T ss_pred             hHHHHHHHHHHHHHhccCcceeehhhhhhcc
Confidence            4447888899999999999999999999985

>cd00929 Cyt_c_Oxidase_VIIc Cytochrome c oxidase subunit VIIc

Probab=95.69  E-value=0.0011  Score=41.04  Aligned_cols=42  Identities=21%  Similarity=0.387  Sum_probs=30.5

Q ss_pred             cCCCCCCccchhhhhhcccccccccchhhhhhhhhhhhcccccceEEEEEeeec
Q 034437           38 GGHGHDEPYYLHAKHMYNLDRMKHQGLKMSLAVFSAFSIGVGVPIYAVIFQQRK   91 (95)
Q Consensus        38 ggHgHdeP~YiHAkhMYnl~~mK~qklk~~lav~~a~~iGv~vPv~Av~FQqkK   91 (95)
                      +|-|++.|        ++++   +++ .+.+-.+.++++|+++|+++|..|++|
T Consensus         5 egp~sNLP--------F~~~---nk~-~~~~~~~~ffg~GF~~PF~i~~~Ql~K   46 (46)
T cd00929           5 EGPGSNLP--------FSVT---NKW-RLTALFHLFFGSGFSAPFIVVRHQLLK   46 (46)
T ss_pred             CCCCCCCC--------cccC---ccc-hHHHHHHHHHHHHHhhhHHHHHHHhhC
Confidence            46677889        5544   333 233334459999999999999999987

Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. The VIIc subunit is found only in eukaryotes and its specific function remains unclear. Peroxide inactivation of bovine CcO coincides with the direct oxidation of tryptophan (W19) within subunit VIIc, along with other structural changes in other subunits.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	95
2y69_L	63	Cytochrome C oxidase subunit 7C; electron transpor	97.79
1v54_L	47	VIIIA, cytochrome C oxidase polypeptide VIIC; oxid	96.98

>2y69_L Cytochrome C oxidase subunit 7C; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}

Probab=97.79  E-value=7.3e-07  Score=57.02  Aligned_cols=54  Identities=26%  Similarity=0.448  Sum_probs=33.1

Q ss_pred             ccceecccccccc----CCCCCCccchhhhhhcccccccccchhhhhhhhhhhhcccccceEEEEEeeecc
Q 034437           26 NRAFHSTGVKRMG----GHGHDEPYYLHAKHMYNLDRMKHQGLKMSLAVFSAFSIGVGVPIYAVIFQQRKT   92 (95)
Q Consensus        26 sR~fhsTg~krmg----gHgHdeP~YiHAkhMYnl~~mK~qklk~~lav~~a~~iGv~vPv~Av~FQqkKT   92 (95)
                      .|.| +|.+.|++    |.|++.|        |++.    .|.++.+-.++++++|+++|++++.+|++|.
T Consensus         6 ~R~f-~ts~~r~sh~~eGp~sNLP--------F~~~----nk~~~~~~~~~f~g~GF~~PF~i~~~Ql~K~   63 (63)
T 2y69_L            6 IRRF-TTSVVRRSHYEEGPGKNIP--------FSVE----NKWRLLAMMTLFFGSGFAAPFFIVRHQLLKK   63 (63)
T ss_dssp             -------------CCCCSTTTSSS--------SCCS----SHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHh-hccHHHhcCCCCCCCCcCC--------cCCc----chhHHHHHHHHHHHHHHhhhHHHHHHHHhcC
Confidence            4667 66666664    4567788        5543    4555777778999999999999999999983

>1v54_L VIIIA, cytochrome C oxidase polypeptide VIIC; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: f.23.6.1 PDB: 1oco_L* 1occ_L* 1ocz_L* 1ocr_L* 1v55_L* 2dyr_L* 2dys_L* 2eij_L* 2eik_L* 2eil_L* 2eim_L* 2ein_L* 2occ_L* 2ybb_W* 2zxw_L* 3abk_L* 3abl_L* 3abm_L* 3ag1_L* 3ag2_L* ...

Probab=96.98  E-value=2.8e-05  Score=47.22  Aligned_cols=43  Identities=21%  Similarity=0.418  Sum_probs=33.7

Q ss_pred             cCCCCCCccchhhhhhcccccccccchhhhhhhhhhhhcccccceEEEEEeeecc
Q 034437           38 GGHGHDEPYYLHAKHMYNLDRMKHQGLKMSLAVFSAFSIGVGVPIYAVIFQQRKT   92 (95)
Q Consensus        38 ggHgHdeP~YiHAkhMYnl~~mK~qklk~~lav~~a~~iGv~vPv~Av~FQqkKT   92 (95)
                      +|.+++.|        +++.    .|..+.+...+++++|+++|++++.+|++|.
T Consensus         5 egp~sNLP--------F~~~----nk~~~~~~~~~f~g~GF~~PF~i~~~Ql~K~   47 (47)
T 1v54_L            5 EGPGKNIP--------FSVE----NKWRLLAMMTLFFGSGFAAPFFIVRHQLLKK   47 (47)
T ss_dssp             CSTTTSSS--------SCCS----SHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             CCCCCcCC--------cCCC----cccHHHHHHHHHHHHHHHhHHHHHHHHHhcC
Confidence            36678888        5433    4455667778899999999999999999983

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00