Citrus Sinensis ID: 034455

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90----
Protein Sequence
MPTRCEIFCEILLAVLLPPVGVCLRHGCCSVEFCICLLLTILGYVPGIIYALYAIVFVDRDEYFDEYRRPLKVPYTFTFSAFCLPSSHFSDQLH
Secondary Structure (PSIPRED)
cccHHHHHHHHHHHHHccccEEEEEEccccHHHHHHHHHHHHHHHcHHEEEEEEEEEEccccccccccccccccccEEEEEEEccccccccccc
Secondary Structure Prediction (SSPRO)
ccccHHHHHHHHHHHHcccHHHHEEcccccHHHHHHHHHHHHHHcccEEEEEEEEEEcccccccccccccccccEEEEEEEEEccccccccccc
Coil and Loop (DISEMBL)
MPTRCEIFCEILLAVllppvgvclrhgccsvEFCICLLLTILGYVPGIIYALYAIVFVdrdeyfdeyrrplkvpytftfsafclpsshfsdqlh
Flexible Loop (DISEMBL)
MPTRCEIFCEILLAVLLPPVGVCLRHGCCSVEFCICLLLTILGYVPGIIYALYAIVFVDRDEYFDEYRRPLKVPYTFTFSAfclpsshfsdqlh
Low Complexity Region (SEG)
MPTRCEIFCEILLAVLLPPVGVCLRHGCCSVEFCICLLLTILGYVPGIIYALYAIVFVDRDEYFDEYRRPLKVPYTFTFSAFCLPSSHFSDQLH
Disordered region (IsUnstruct)
****CEIFCEILLAVLLPPVGVCLRHGCCSVEFCICLLLTILGYVPGIIYALYAIVFVDRDEYFDEYRRPLKVPYTFTFSAFCLP*********
Disordered Region (DISOPRED)
***RCEIFCEILLAVLLPPVGVCLRHGCCSVEFCICLLLTILGYVPGIIYALYAIVFVDR***********KVPYTFTFS**************
Disordered Region (DISEMBL)
MPTRCEIFCEILLAVLLPPVGVCLRHGCCSVEFCICLLLTILGYVPGIIYALYAIVFVDRDEYFDEYRRPLKVPYTFTFSAFCLPSSHFSDQLH
Disordered Region (DISPRO)
**TRCEIFCEILLAVLLPPVGVCLRHGCCSVEFCICLLLTILGYVPGIIYALYAIVFVDRDEYFDEYRRPLKVPYTFTFSAFCLPS********
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooo
Transmembrane Helix (MEMSAT)
ooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooHHHHHHHHHHHHHHHHHHHiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSSSSSSSSoooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MPTRCEIFCEILLAVLLPPVGVCLRHGCCSVEFCICLLLTILGYVPGIIYALYAIVFVDRDEYFDEYRRPLKVPYTFTFSAFCLPSSHFSDQLH
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	94	2.2.26 [Sep-21-2011]
Q9SUI0	74	UPF0057 membrane protein	no	no	0.755	0.959	0.746	9e-26
O82232	75	UPF0057 membrane protein	no	no	0.755	0.946	0.746	8e-25
Q9M095	73	UPF0057 membrane protein	no	no	0.755	0.972	0.652	8e-20
Q9LRI7	72	Hydrophobic protein OSR8	yes	no	0.691	0.902	0.707	8e-19
Q9ARD5	54	Low temperature-induced p	N/A	no	0.510	0.888	0.673	3e-11
Q9ZNQ7	54	Hydrophobic protein RCI2A	no	no	0.5	0.870	0.645	3e-10
Q9ZNS6	54	Hydrophobic protein RCI2B	no	no	0.5	0.870	0.645	5e-10
P68179	54	Low temperature-induced p	N/A	no	0.489	0.851	0.680	9e-10
P68178	54	Salt stress-induced hydro	N/A	no	0.489	0.851	0.680	9e-10
Q4HXT6	57	Plasma membrane proteolip	yes	no	0.585	0.964	0.571	3e-09

>sp|Q9SUI0|RC24_ARATH UPF0057 membrane protein At4g30660 OS=Arabidopsis thaliana GN=At4g30660 PE=2 SV=1

 Score =  115 bits (287), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 53/71 (74%), Positives = 63/71 (88%)

Query: 1  MPTRCEIFCEILLAVLLPPVGVCLRHGCCSVEFCICLLLTILGYVPGIIYALYAIVFVDR 60
          MP+ CEI CEI++A+LLPP+GVC R GCC+VEF ICL+LTILGYVPGIIYA+Y IVF  R
Sbjct: 1  MPSNCEILCEIIIAILLPPLGVCFRKGCCTVEFLICLVLTILGYVPGIIYAIYVIVFQHR 60

Query: 61 DEYFDEYRRPL 71
          +EYFDEYRRP+
Sbjct: 61 EEYFDEYRRPI 71

Arabidopsis thaliana (taxid: 3702)

>sp|O82232|RC22_ARATH UPF0057 membrane protein At2g24040 OS=Arabidopsis thaliana GN=At2g24040 PE=3 SV=1

 Score =  112 bits (279), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 53/71 (74%), Positives = 63/71 (88%)

Query: 1  MPTRCEIFCEILLAVLLPPVGVCLRHGCCSVEFCICLLLTILGYVPGIIYALYAIVFVDR 60
          M + CE+ CEI +A+LLPPVGVCLRHGCC+VEF ICL+LT LGY+PGIIYA+YAI F+ R
Sbjct: 1  MASSCELCCEIFIAILLPPVGVCLRHGCCTVEFFICLILTCLGYLPGIIYAIYAICFLHR 60

Query: 61 DEYFDEYRRPL 71
          DEYFDEYRRP+
Sbjct: 61 DEYFDEYRRPI 71

Arabidopsis thaliana (taxid: 3702)

>sp|Q9M095|RC23_ARATH UPF0057 membrane protein At4g30650 OS=Arabidopsis thaliana GN=At4g30650 PE=3 SV=1

 Score = 95.5 bits (236), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 47/72 (65%), Positives = 57/72 (79%), Gaps = 1/72 (1%)

Query: 1  MPTRCEIFCEILLAVLLPPVGVCLRHGCCSVEFCICLLLTILGYVPGIIYALYAIVFVDR 60
          M +  E+FCEIL+A+LLPP+GVCL+ GCC+VEF ICL+LTILGY+PGIIYALY IVF +R
Sbjct: 1  MASNMEVFCEILIAILLPPLGVCLKRGCCTVEFLICLVLTILGYIPGIIYALYVIVFQNR 60

Query: 61 DEYFDEYRRPLK 72
           E   E   PL 
Sbjct: 61 -EGSTELGAPLN 71

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LRI7|OSR8_ORYSJ Hydrophobic protein OSR8 OS=Oryza sativa subsp. japonica GN=OSR8 PE=3 SV=1

 Score = 92.4 bits (228), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 46/65 (70%), Positives = 54/65 (83%)

Query: 4  RCEIFCEILLAVLLPPVGVCLRHGCCSVEFCICLLLTILGYVPGIIYALYAIVFVDRDEY 63
          RC  F EILLA++LPP+GV LR GCCS+EFCICLLLTILGYVPGIIYA+Y +V +D D+Y
Sbjct: 5  RCCTFLEILLAIILPPLGVFLRFGCCSMEFCICLLLTILGYVPGIIYAVYVLVALDSDQY 64

Query: 64 FDEYR 68
            EY 
Sbjct: 65 QREYH 69

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q9ARD5|LT02_HORVU Low temperature-induced protein lt101.2 OS=Hordeum vulgare GN=LT101.2 PE=2 SV=1

 Score = 67.0 bits (162), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 33/49 (67%), Positives = 43/49 (87%), Gaps = 1/49 (2%)

Query: 8  FCEILLAVLLPPVGVCLRHGCCSVEFCICLLLTILGYVPGIIYALYAIV 56
          F E++LA++LPPVGV LR+G  +VEF ICLLLT+LGY+PGIIYA+Y +V
Sbjct: 6  FIEVILAIILPPVGVFLRYGL-AVEFWICLLLTLLGYIPGIIYAVYVLV 53

Hordeum vulgare (taxid: 4513)

>sp|Q9ZNQ7|RCI2A_ARATH Hydrophobic protein RCI2A OS=Arabidopsis thaliana GN=RCI2A PE=2 SV=1

 Score = 63.5 bits (153), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 31/48 (64%), Positives = 41/48 (85%), Gaps = 1/48 (2%)

Query: 8  FCEILLAVLLPPVGVCLRHGCCSVEFCICLLLTILGYVPGIIYALYAI 55
          F +I++A+LLPP+GV LR GC  VEF ICL+LT+LGY+PGIIYA+Y +
Sbjct: 6  FVDIIIAILLPPLGVFLRFGC-GVEFWICLVLTLLGYIPGIIYAIYVL 52

Arabidopsis thaliana (taxid: 3702)

>sp|Q9ZNS6|RCI2B_ARATH Hydrophobic protein RCI2B OS=Arabidopsis thaliana GN=RCI2B PE=2 SV=1

 Score = 62.8 bits (151), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 31/48 (64%), Positives = 40/48 (83%), Gaps = 1/48 (2%)

Query: 8  FCEILLAVLLPPVGVCLRHGCCSVEFCICLLLTILGYVPGIIYALYAI 55
          F EI+LA++LPP+GV L+ GC  VEF ICL+LT+ GY+PGI+YALY I
Sbjct: 6  FVEIILAIILPPLGVFLKFGC-KVEFWICLILTLFGYLPGILYALYII 52

Arabidopsis thaliana (taxid: 3702)

>sp|P68179|LT01_HORVU Low temperature-induced protein lt101.1 OS=Hordeum vulgare GN=LT101.1 PE=2 SV=1

 Score = 62.0 bits (149), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 32/47 (68%), Positives = 40/47 (85%), Gaps = 1/47 (2%)

Query: 10 EILLAVLLPPVGVCLRHGCCSVEFCICLLLTILGYVPGIIYALYAIV 56
          E++LA++LPPVGV LR+    VEF ICLLLTILGY+PGIIYA+Y +V
Sbjct: 8  EVILAIILPPVGVFLRYKL-GVEFWICLLLTILGYIPGIIYAVYVLV 53

Hordeum vulgare (taxid: 4513)

>sp|P68178|ESI3_LOPEL Salt stress-induced hydrophobic peptide ESI3 OS=Lophopyrum elongatum GN=ESI3 PE=2 SV=1

 Score = 62.0 bits (149), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 32/47 (68%), Positives = 40/47 (85%), Gaps = 1/47 (2%)

Query: 10 EILLAVLLPPVGVCLRHGCCSVEFCICLLLTILGYVPGIIYALYAIV 56
          E++LA++LPPVGV LR+    VEF ICLLLTILGY+PGIIYA+Y +V
Sbjct: 8  EVILAIILPPVGVFLRYKL-GVEFWICLLLTILGYIPGIIYAVYVLV 53

Lophopyrum elongatum (taxid: 4588)

>sp|Q4HXT6|PMP3_GIBZE Plasma membrane proteolipid 3 OS=Gibberella zeae (strain PH-1 / ATCC MYA-4620 / FGSC 9075 / NRRL 31084) GN=PMP3 PE=3 SV=2

 Score = 60.5 bits (145), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 32/56 (57%), Positives = 42/56 (75%), Gaps = 1/56 (1%)

Query: 1  MPTRCEIFCEILLAVLLPPVGVCLRHGCCSVEFCICLLLTILGYVPGIIYALYAIV 56
          MP      C+I+LA++LPPVGV L  GC + +F I +LLTILGY+PGII+ALY I+
Sbjct: 1  MPFTASDICKIILAIILPPVGVFLERGCGA-DFFINILLTILGYIPGIIHALYIIL 55

Plays a role in the regulation of membrane potential. Could mediate a proton leak.

Gibberella zeae (strain PH-1 / ATCC MYA-4620 / FGSC 9075 / NRRL 31084) (taxid: 229533)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	94
357480027	244	Stress-induced hydrophobic peptide [Medi	0.925	0.356	0.724	4e-30
449457875	75	PREDICTED: UPF0057 membrane protein At4g	0.787	0.986	0.851	5e-30
118483765	75	unknown [Populus trichocarpa]	0.787	0.986	0.864	1e-29
313586571	75	stress-induced hydrophobic peptide 1 [He	0.797	1.0	0.88	2e-29
255577047	75	Hydrophobic protein OSR8, putative [Rici	0.797	1.0	0.84	4e-29
224088316	73	stress-induced hydrophobic peptide [Popu	0.755	0.972	0.887	5e-29
356500671	75	PREDICTED: UPF0057 membrane protein At4g	0.797	1.0	0.813	2e-28
388495520	77	unknown [Medicago truncatula]	0.755	0.922	0.845	5e-28
388503944	77	unknown [Medicago truncatula]	0.755	0.922	0.830	1e-27
388498092	78	unknown [Lotus japonicus] gi|388505686|g	0.787	0.948	0.797	3e-27

>gi|357480027|ref|XP_003610299.1| Stress-induced hydrophobic peptide [Medicago truncatula] gi|355511354|gb|AES92496.1| Stress-induced hydrophobic peptide [Medicago truncatula]

 Score =  135 bits (339), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 63/87 (72%), Positives = 75/87 (86%)

Query: 1  MPTRCEIFCEILLAVLLPPVGVCLRHGCCSVEFCICLLLTILGYVPGIIYALYAIVFVDR 60
          MP+RCEI CEI++AVLLPP+GVCLRHGCC+VEF ICLLLTILGY+PGIIYALYAI+F+DR
Sbjct: 1  MPSRCEICCEIMIAVLLPPLGVCLRHGCCTVEFIICLLLTILGYLPGIIYALYAIIFIDR 60

Query: 61 DEYFDEYRRPLKVPYTFTFSAFCLPSS 87
          D+YFDEYRRPL   +     +  +PSS
Sbjct: 61 DQYFDEYRRPLYNSFVAFHVSTIVPSS 87

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449457875|ref|XP_004146673.1| PREDICTED: UPF0057 membrane protein At4g30660-like [Cucumis sativus] gi|449503159|ref|XP_004161863.1| PREDICTED: UPF0057 membrane protein At4g30660-like [Cucumis sativus]

 Score =  134 bits (338), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 63/74 (85%), Positives = 71/74 (95%)

Query: 1  MPTRCEIFCEILLAVLLPPVGVCLRHGCCSVEFCICLLLTILGYVPGIIYALYAIVFVDR 60
          MP+RCEIFCEIL+A+L+PP+GVCLRHGCC+VEFCICLLLT LGYVPGIIYALYAIVF+DR
Sbjct: 1  MPSRCEIFCEILIAILIPPLGVCLRHGCCTVEFCICLLLTFLGYVPGIIYALYAIVFIDR 60

Query: 61 DEYFDEYRRPLKVP 74
          +EYFDEYRRPL  P
Sbjct: 61 NEYFDEYRRPLYAP 74

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|118483765|gb|ABK93775.1| unknown [Populus trichocarpa]

 Score =  133 bits (334), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 64/74 (86%), Positives = 70/74 (94%)

Query: 1  MPTRCEIFCEILLAVLLPPVGVCLRHGCCSVEFCICLLLTILGYVPGIIYALYAIVFVDR 60
          MP+RCEI CEIL+A+LLPP+GVC RHGCCSVEFCICLLLTILGYVPGIIYALYAIVF+DR
Sbjct: 1  MPSRCEICCEILIAILLPPLGVCFRHGCCSVEFCICLLLTILGYVPGIIYALYAIVFIDR 60

Query: 61 DEYFDEYRRPLKVP 74
          +EYFDEYRRPL  P
Sbjct: 61 NEYFDEYRRPLYAP 74

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|313586571|gb|ADR71296.1| stress-induced hydrophobic peptide 1 [Hevea brasiliensis]

 Score =  132 bits (333), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 66/75 (88%), Positives = 69/75 (92%)

Query: 1  MPTRCEIFCEILLAVLLPPVGVCLRHGCCSVEFCICLLLTILGYVPGIIYALYAIVFVDR 60
          MPTRCEI CEIL+A+LLPP+GVC RHGCCSVEFCICLLLTILGYVPGIIYALYAIVFVDR
Sbjct: 1  MPTRCEICCEILIAILLPPLGVCFRHGCCSVEFCICLLLTILGYVPGIIYALYAIVFVDR 60

Query: 61 DEYFDEYRRPLKVPY 75
          DEYFDE RRPL   Y
Sbjct: 61 DEYFDESRRPLYSSY 75

Source: Hevea brasiliensis

Species: Hevea brasiliensis

Genus: Hevea

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255577047|ref|XP_002529408.1| Hydrophobic protein OSR8, putative [Ricinus communis] gi|223531156|gb|EEF33004.1| Hydrophobic protein OSR8, putative [Ricinus communis]

 Score =  131 bits (330), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 63/75 (84%), Positives = 70/75 (93%)

Query: 1  MPTRCEIFCEILLAVLLPPVGVCLRHGCCSVEFCICLLLTILGYVPGIIYALYAIVFVDR 60
          MP++CEI CEIL+A+LLPP+GVCLRHGCCSVEF ICLLLTILGYVPGIIYALYAIVFV+R
Sbjct: 1  MPSKCEILCEILIAILLPPLGVCLRHGCCSVEFWICLLLTILGYVPGIIYALYAIVFVNR 60

Query: 61 DEYFDEYRRPLKVPY 75
          DE+FDEYRRPL   Y
Sbjct: 61 DEFFDEYRRPLYAAY 75

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224088316|ref|XP_002308410.1| stress-induced hydrophobic peptide [Populus trichocarpa] gi|222854386|gb|EEE91933.1| stress-induced hydrophobic peptide [Populus trichocarpa]

 Score =  131 bits (330), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 63/71 (88%), Positives = 69/71 (97%)

Query: 1  MPTRCEIFCEILLAVLLPPVGVCLRHGCCSVEFCICLLLTILGYVPGIIYALYAIVFVDR 60
          MP+RCEI CEIL+A+LLPP+GVC RHGCCSVEFCICLLLTILGYVPGIIYALYAIVF+DR
Sbjct: 1  MPSRCEICCEILIAILLPPLGVCFRHGCCSVEFCICLLLTILGYVPGIIYALYAIVFIDR 60

Query: 61 DEYFDEYRRPL 71
          +EYFDEYRRPL
Sbjct: 61 NEYFDEYRRPL 71

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356500671|ref|XP_003519155.1| PREDICTED: UPF0057 membrane protein At4g30660 [Glycine max] gi|255628505|gb|ACU14597.1| unknown [Glycine max]

 Score =  129 bits (324), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 61/75 (81%), Positives = 69/75 (92%)

Query: 1  MPTRCEIFCEILLAVLLPPVGVCLRHGCCSVEFCICLLLTILGYVPGIIYALYAIVFVDR 60
          MPTRCEI CEI++A+L+PP+GVC RHGCCSVEF ICLLLTILGY+PGIIYALYAI+FVDR
Sbjct: 1  MPTRCEICCEIMIAILIPPLGVCFRHGCCSVEFIICLLLTILGYIPGIIYALYAIIFVDR 60

Query: 61 DEYFDEYRRPLKVPY 75
          D+YFDEYRRPL   Y
Sbjct: 61 DQYFDEYRRPLYAQY 75

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388495520|gb|AFK35826.1| unknown [Medicago truncatula]

 Score =  128 bits (321), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 60/71 (84%), Positives = 69/71 (97%)

Query: 1  MPTRCEIFCEILLAVLLPPVGVCLRHGCCSVEFCICLLLTILGYVPGIIYALYAIVFVDR 60
          MP+RCEI CEI++AVLLPP+GVCLRHGCC+VEF ICLLLTILGY+PGIIYALYAI+F+DR
Sbjct: 1  MPSRCEICCEIMIAVLLPPLGVCLRHGCCTVEFIICLLLTILGYLPGIIYALYAIIFIDR 60

Query: 61 DEYFDEYRRPL 71
          D+YFDEYRRPL
Sbjct: 61 DQYFDEYRRPL 71

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388503944|gb|AFK40038.1| unknown [Medicago truncatula]

 Score =  126 bits (317), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 59/71 (83%), Positives = 68/71 (95%)

Query: 1  MPTRCEIFCEILLAVLLPPVGVCLRHGCCSVEFCICLLLTILGYVPGIIYALYAIVFVDR 60
          MP+RCEI CEI++AVLLPP+GVC RHGCC+VEF ICLLLTILGY+PGIIYALYAI+F+DR
Sbjct: 1  MPSRCEICCEIMIAVLLPPLGVCFRHGCCTVEFIICLLLTILGYLPGIIYALYAIIFIDR 60

Query: 61 DEYFDEYRRPL 71
          D+YFDEYRRPL
Sbjct: 61 DQYFDEYRRPL 71

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388498092|gb|AFK37112.1| unknown [Lotus japonicus] gi|388505686|gb|AFK40909.1| unknown [Lotus japonicus]

 Score =  125 bits (314), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 59/74 (79%), Positives = 68/74 (91%)

Query: 1  MPTRCEIFCEILLAVLLPPVGVCLRHGCCSVEFCICLLLTILGYVPGIIYALYAIVFVDR 60
          MP+RC I CE+L+AVLLPP+GVCLRHGCC+VEF ICLLLTILGY+PGIIYALYAI+F+DR
Sbjct: 1  MPSRCAICCELLIAVLLPPLGVCLRHGCCTVEFIICLLLTILGYIPGIIYALYAIIFIDR 60

Query: 61 DEYFDEYRRPLKVP 74
          D+YFDE RRPL  P
Sbjct: 61 DQYFDESRRPLYAP 74

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	94
TAIR|locus:1006230338	77	AT4G28088 "AT4G28088" [Arabido	0.755	0.922	0.760	1.2e-28
TAIR|locus:2131964	74	AT4G30660 "AT4G30660" [Arabido	0.755	0.959	0.746	8.2e-28
TAIR|locus:2061501	75	AT2G24040 [Arabidopsis thalian	0.755	0.946	0.746	1e-27
TAIR|locus:2118741	73	AT4G30650 "AT4G30650" [Arabido	0.648	0.835	0.704	2.4e-21
TAIR|locus:505006307	54	AT2G38905 "AT2G38905" [Arabido	0.531	0.925	0.745	1.3e-15
TAIR|locus:2074509	54	RCI2A "AT3G05880" [Arabidopsis	0.5	0.870	0.645	4.4e-13
TAIR|locus:2074419	54	RCI2B "RARE-COLD-INDUCIBLE 2B"	0.5	0.870	0.645	1.2e-12
UNIPROTKB|G4NIV3	57	MGG_04105 "Plasma membrane pro	0.585	0.964	0.535	3.5e-11
UNIPROTKB|Q8H5T6	56	LTI6A "Hydrophobic protein LTI	0.478	0.803	0.586	9.4e-11
WB|WBGene00020736	57	T23F2.3 [Caenorhabditis elegan	0.585	0.964	0.535	9.4e-11

TAIR|locus:1006230338 AT4G28088 "AT4G28088" [Arabidopsis thaliana (taxid:3702)]

 Score = 319 (117.4 bits), Expect = 1.2e-28, P = 1.2e-28
 Identities = 54/71 (76%), Positives = 65/71 (91%)

Query:     1 MPTRCEIFCEILLAVLLPPVGVCLRHGCCSVEFCICLLLTILGYVPGIIYALYAIVFVDR 60
             M   CEI CEI++A+L+PP+GVCLRHGCC+ EF ICL+LT+LGYVPGIIYALYAIV+VDR
Sbjct:     1 MANGCEICCEIMIAILIPPLGVCLRHGCCTTEFMICLILTLLGYVPGIIYALYAIVYVDR 60

Query:    61 DEYFDEYRRPL 71
             D++FDEYRRPL
Sbjct:    61 DQFFDEYRRPL 71

GO:0008150 "biological_process" evidence=ND

GO:0016021 "integral to membrane" evidence=IEA

TAIR|locus:2131964 AT4G30660 "AT4G30660" [Arabidopsis thaliana (taxid:3702)]

 Score = 311 (114.5 bits), Expect = 8.2e-28, P = 8.2e-28
 Identities = 53/71 (74%), Positives = 63/71 (88%)

Query:     1 MPTRCEIFCEILLAVLLPPVGVCLRHGCCSVEFCICLLLTILGYVPGIIYALYAIVFVDR 60
             MP+ CEI CEI++A+LLPP+GVC R GCC+VEF ICL+LTILGYVPGIIYA+Y IVF  R
Sbjct:     1 MPSNCEILCEIIIAILLPPLGVCFRKGCCTVEFLICLVLTILGYVPGIIYAIYVIVFQHR 60

Query:    61 DEYFDEYRRPL 71
             +EYFDEYRRP+
Sbjct:    61 EEYFDEYRRPI 71

GO:0009409 "response to cold" evidence=ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0042538 "hyperosmotic salinity response" evidence=ISS

GO:0006333 "chromatin assembly or disassembly" evidence=RCA

GO:0042631 "cellular response to water deprivation" evidence=RCA

TAIR|locus:2061501 AT2G24040 [Arabidopsis thaliana (taxid:3702)]

 Score = 310 (114.2 bits), Expect = 1.0e-27, P = 1.0e-27
 Identities = 53/71 (74%), Positives = 63/71 (88%)

Query:     1 MPTRCEIFCEILLAVLLPPVGVCLRHGCCSVEFCICLLLTILGYVPGIIYALYAIVFVDR 60
             M + CE+ CEI +A+LLPPVGVCLRHGCC+VEF ICL+LT LGY+PGIIYA+YAI F+ R
Sbjct:     1 MASSCELCCEIFIAILLPPVGVCLRHGCCTVEFFICLILTCLGYLPGIIYAIYAICFLHR 60

Query:    61 DEYFDEYRRPL 71
             DEYFDEYRRP+
Sbjct:    61 DEYFDEYRRPI 71

GO:0005576 "extracellular region" evidence=ISM

GO:0009409 "response to cold" evidence=ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0042538 "hyperosmotic salinity response" evidence=ISS

TAIR|locus:2118741 AT4G30650 "AT4G30650" [Arabidopsis thaliana (taxid:3702)]

 Score = 250 (93.1 bits), Expect = 2.4e-21, P = 2.4e-21
 Identities = 43/61 (70%), Positives = 54/61 (88%)

Query:     1 MPTRCEIFCEILLAVLLPPVGVCLRHGCCSVEFCICLLLTILGYVPGIIYALYAIVFVDR 60
             M +  E+FCEIL+A+LLPP+GVCL+ GCC+VEF ICL+LTILGY+PGIIYALY IVF +R
Sbjct:     1 MASNMEVFCEILIAILLPPLGVCLKRGCCTVEFLICLVLTILGYIPGIIYALYVIVFQNR 60

Query:    61 D 61
             +
Sbjct:    61 E 61

GO:0009409 "response to cold" evidence=ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0042538 "hyperosmotic salinity response" evidence=ISS

GO:0050832 "defense response to fungus" evidence=IEP

TAIR|locus:505006307 AT2G38905 "AT2G38905" [Arabidopsis thaliana (taxid:3702)]

 Score = 196 (74.1 bits), Expect = 1.3e-15, P = 1.3e-15
 Identities = 38/51 (74%), Positives = 44/51 (86%)

Query:     6 EIFCEILLAVLLPPVGVCLRHGCCSVEFCICLLLTILGYVPGIIYALYAIV 56
             E F EI+LA+LLPPVGV LR+GC  VEF ICLLLTILGY+PGIIYA+Y +V
Sbjct:     4 ETFLEIILAILLPPVGVFLRYGC-GVEFWICLLLTILGYIPGIIYAIYVLV 53

GO:0009409 "response to cold" evidence=ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0042538 "hyperosmotic salinity response" evidence=ISS

TAIR|locus:2074509 RCI2A "AT3G05880" [Arabidopsis thaliana (taxid:3702)]

 Score = 172 (65.6 bits), Expect = 4.4e-13, P = 4.4e-13
 Identities = 31/48 (64%), Positives = 41/48 (85%)

Query:     8 FCEILLAVLLPPVGVCLRHGCCSVEFCICLLLTILGYVPGIIYALYAI 55
             F +I++A+LLPP+GV LR GC  VEF ICL+LT+LGY+PGIIYA+Y +
Sbjct:     6 FVDIIIAILLPPLGVFLRFGC-GVEFWICLVLTLLGYIPGIIYAIYVL 52

GO:0003674 "molecular_function" evidence=ND

GO:0016021 "integral to membrane" evidence=IEA;ISS

GO:0042538 "hyperosmotic salinity response" evidence=IGI;TAS

GO:0009737 "response to abscisic acid stimulus" evidence=TAS

GO:0006096 "glycolysis" evidence=RCA

GO:0006833 "water transport" evidence=RCA

GO:0006972 "hyperosmotic response" evidence=RCA

GO:0007030 "Golgi organization" evidence=RCA

GO:0009266 "response to temperature stimulus" evidence=RCA

GO:0009651 "response to salt stress" evidence=RCA

GO:0046686 "response to cadmium ion" evidence=RCA

GO:0009409 "response to cold" evidence=TAS

TAIR|locus:2074419 RCI2B "RARE-COLD-INDUCIBLE 2B" [Arabidopsis thaliana (taxid:3702)]

 Score = 168 (64.2 bits), Expect = 1.2e-12, P = 1.2e-12
 Identities = 31/48 (64%), Positives = 40/48 (83%)

Query:     8 FCEILLAVLLPPVGVCLRHGCCSVEFCICLLLTILGYVPGIIYALYAI 55
             F EI+LA++LPP+GV L+ GC  VEF ICL+LT+ GY+PGI+YALY I
Sbjct:     6 FVEIILAIILPPLGVFLKFGC-KVEFWICLILTLFGYLPGILYALYII 52

GO:0016021 "integral to membrane" evidence=IEA;ISS

GO:0009409 "response to cold" evidence=IMP

UNIPROTKB|G4NIV3 MGG_04105 "Plasma membrane proteolipid 3" [Magnaporthe oryzae 70-15 (taxid:242507)]

 Score = 154 (59.3 bits), Expect = 3.5e-11, P = 3.5e-11
 Identities = 30/56 (53%), Positives = 40/56 (71%)

Query:     1 MPTRCEIFCEILLAVLLPPVGVCLRHGCCSVEFCICLLLTILGYVPGIIYALYAIV 56
             MP      C+I+LAV+LPP+GV +  GC   +  I +LLTILGY+PGII+ALY I+
Sbjct:     1 MPFTASDICKIILAVILPPLGVFMERGC-GADLLINILLTILGYIPGIIHALYIIL 55

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0043581 "mycelium development" evidence=IEP

UNIPROTKB|Q8H5T6 LTI6A "Hydrophobic protein LTI6A" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 150 (57.9 bits), Expect = 9.4e-11, P = 9.4e-11
 Identities = 27/46 (58%), Positives = 37/46 (80%)

Query:    10 EILLAVLLPPVGVCLRHGCCSVEFCICLLLTILGYVPGIIYALYAI 55
             +I+LA++LPP+GV  + GC  +EF ICLLLT  GY+PGIIYA++ I
Sbjct:    10 DIILAIILPPLGVFFKFGC-GIEFWICLLLTFFGYLPGIIYAVWVI 54

GO:0005886 "plasma membrane" evidence=ISS

GO:0009409 "response to cold" evidence=IEP

GO:0009414 "response to water deprivation" evidence=IEP

GO:0009651 "response to salt stress" evidence=IEP

GO:0009737 "response to abscisic acid stimulus" evidence=IEP

WB|WBGene00020736 T23F2.3 [Caenorhabditis elegans (taxid:6239)]

 Score = 150 (57.9 bits), Expect = 9.4e-11, P = 9.4e-11
 Identities = 30/56 (53%), Positives = 36/56 (64%)

Query:     1 MPTRCEIFCEILLAVLLPPVGVCLRHGCCSVEFCICLLLTILGYVPGIIYALYAIV 56
             M   C    + + AVLLPP+GV L  GC      IC+LLTILGY+PGIIYA Y I+
Sbjct:     1 MALTCTDIPKFICAVLLPPIGVFLEKGC-DYHLAICILLTILGYIPGIIYACYVIL 55

GO:0016021 "integral to membrane" evidence=IEA

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Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9LRI7	OSR8_ORYSJ	No assigned EC number	0.7076	0.6914	0.9027	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: gw1.VI.330.1 SubName- Full=Putative uncharacterized protein; (73 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	94
pfam01679	51	pfam01679, Pmp3, Proteolipid membrane potential mo	3e-15
COG0401	56	COG0401, COG0401, Uncharacterized homolog of Blt10	7e-12

>gnl|CDD|201919 pfam01679, Pmp3, Proteolipid membrane potential modulator

 Score = 63.2 bits (155), Expect = 3e-15
 Identities = 26/50 (52%), Positives = 36/50 (72%), Gaps = 1/50 (2%)

Query: 8  FCEILLAVLLPPVGVCLRHGCCSVEFCICLLLTILGYVPGIIYALYAIVF 57
             I+LA+ LPP+ V L+ GC   +F I +LLT+LGY+PGII+ALY I+ 
Sbjct: 3  ILLIILAIFLPPLAVFLKRGC-GKDFLINILLTLLGYIPGIIHALYIILK 51

Pmp3 is an evolutionarily conserved proteolipid in the plasma membrane which, in S. pombe, is transcriptionally regulated by the Spc1 stress MAPK (mitogen-activated protein kinases) pathway. It functions to modulate the membrane potential, particularly to resist high cellular cation concentration. In eukaryotic organisms, stress-activated mitogen-activated protein kinases play crucial roles in transmitting environmental signals that will regulate gene expression for allowing the cell to adapt to cellular stress. Pmp3-like proteins are highly conserved in bacteria, yeast, nematode and plants. Length = 51

>gnl|CDD|223478 COG0401, COG0401, Uncharacterized homolog of Blt101 [Function unknown]

 Score = 54.6 bits (132), Expect = 7e-12
 Identities = 28/48 (58%), Positives = 36/48 (75%)

Query: 8  FCEILLAVLLPPVGVCLRHGCCSVEFCICLLLTILGYVPGIIYALYAI 55
          F  I+LA+ LPP+GV LR G    +F I +LLT+LGY+PGII+ALY I
Sbjct: 6  FIRIVLAIFLPPLGVFLRRGFGGKDFLINILLTLLGYIPGIIHALYVI 53

Length = 56

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	94
KOG1773	63	consensus Stress responsive protein [General funct	99.94
COG0401	56	Uncharacterized homolog of Blt101 [Function unknow	99.92
PF01679	51	Pmp3: Proteolipid membrane potential modulator; In	99.87
PF14373	43	Imm_superinfect: Superinfection immunity protein	87.18

>KOG1773 consensus Stress responsive protein [General function prediction only]

Probab=99.94  E-value=3e-27  Score=152.29  Aligned_cols=61  Identities=49%  Similarity=0.949  Sum_probs=59.7

Q ss_pred             CCcchHHHHHHHHHHhcccceeeecccCCchhHHHHHHHHHHHhhhhhhhheeeEEeeCcc
Q 034455            1 MPTRCEIFCEILLAVLLPPVGVCLRHGCCSVEFCICLLLTILGYVPGIIYALYAIVFVDRD   61 (94)
Q Consensus         1 M~~~~~~i~liiLAi~lPPLaV~l~~G~~~~~~~InllLTllGwiPGiIHA~yvi~~~~~~   61 (94)
                      |++|+++++++++|+++||+||++++|+|++|++||++||++||+||+|||+|++.+++|+
T Consensus         1 m~~~~~~~~~iilai~lPP~aV~l~~g~C~~~~~InilL~~L~~iPgiIhA~yii~~~~r~   61 (63)
T KOG1773|consen    1 MATDCDDILLIILAIFLPPLAVFLRRGGCTVDVLINILLTLLGFIPGIIHAIYIIFFRGRE   61 (63)
T ss_pred             CCCcHHHHHHHHHHHHcCchheeeecCCCchhhHHHHHHHHHHHhHHHHhhEEEEEEecCC
Confidence            8999999999999999999999999999999999999999999999999999999999887

>COG0401 Uncharacterized homolog of Blt101 [Function unknown]

Probab=99.92  E-value=2.7e-25  Score=140.42  Aligned_cols=56  Identities=50%  Similarity=0.830  Sum_probs=52.8

Q ss_pred             cchHHHHHHHHHHhcccceeeecccCCchhHHHHHHHHHHHhhhhhhhheeeEEee
Q 034455            3 TRCEIFCEILLAVLLPPVGVCLRHGCCSVEFCICLLLTILGYVPGIIYALYAIVFV   58 (94)
Q Consensus         3 ~~~~~i~liiLAi~lPPLaV~l~~G~~~~~~~InllLTllGwiPGiIHA~yvi~~~   58 (94)
                      ++..|++++++|+|+||+||++++|.|++|+++|++||++||+||+|||+|++.++
T Consensus         1 ~~~~d~~~iilaiflPP~~VfL~~G~~~~df~iNiLLtlLg~~PGiiHA~yvi~~~   56 (56)
T COG0401           1 MTLMDFIRIVLAIFLPPLGVFLRRGFGGKDFLINILLTLLGYIPGIIHALYVILRD   56 (56)
T ss_pred             CcHHHHHHHHHHHHcCchhhhhhccCCcHHHHHHHHHHHHHhhhhhHhheEEEEeC
Confidence            36789999999999999999999998899999999999999999999999999764

>PF01679 Pmp3: Proteolipid membrane potential modulator; InterPro: IPR000612 Proteolipid membrane potential modulator is an evolutionarily conserved proteolipid in the plasma membrane which, in S

Probab=99.87  E-value=4.8e-23  Score=127.37  Aligned_cols=50  Identities=52%  Similarity=0.934  Sum_probs=48.0

Q ss_pred             HHHHHHHHHhcccceeeecccCCchhHHHHHHHHHHHhhhhhhhheeeEEe
Q 034455            7 IFCEILLAVLLPPVGVCLRHGCCSVEFCICLLLTILGYVPGIIYALYAIVF   57 (94)
Q Consensus         7 ~i~liiLAi~lPPLaV~l~~G~~~~~~~InllLTllGwiPGiIHA~yvi~~   57 (94)
                      |++++++|+++||+||++++| |++|+++|++||++||+||++||+|++++
T Consensus         2 ~~~~~ilai~lPPlaV~~~~g-~~~~~~inl~Ltl~g~iPg~ihA~y~i~~   51 (51)
T PF01679_consen    2 DILLIILAIFLPPLAVFLKKG-CSKDFWINLLLTLLGWIPGVIHALYVIYK   51 (51)
T ss_pred             cHHHHHHHHHcccHHHHHHcC-CchhhHHHHHHHHHHHHHHHHHeeEEEeC
Confidence            689999999999999999999 99999999999999999999999999864

pombe, is transcriptionally regulated by the Spc1 stress MAPK (mitogen-activated protein kinases) pathway. It functions to modulate the membrane potential, particularly to resist high cellular cation concentration. In eukaryotic organisms, stress-activated mitogen-activated protein kinases play crucial roles in transmitting environmental signals that will regulate gene expression for allowing the cell to adapt to cellular stress. Pmp3-like proteins are highly conserved in bacteria, yeast, nematode and plants. Proteins in this entry include the PMP3 as well as several other proteins that have been shown [] to be evolutionary related. These are small proteins of from 52 to 140 amino-acid resiudes that contain two transmembrane domains and belong to the UPF0057 (PMP3) protein family.; GO: 0016021 integral to membrane

>PF14373 Imm_superinfect: Superinfection immunity protein

Probab=87.18  E-value=0.62  Score=27.94  Aligned_cols=23  Identities=43%  Similarity=0.661  Sum_probs=19.8

Q ss_pred             chhHHHHHHH--HHHHhhhhhhhhe
Q 034455           30 SVEFCICLLL--TILGYVPGIIYAL   52 (94)
Q Consensus        30 ~~~~~InllL--TllGwiPGiIHA~   52 (94)
                      ..=+++|++|  |++||+-+.++|+
T Consensus        18 ~~I~~~Nl~lGWT~iGWv~aLiwA~   42 (43)
T PF14373_consen   18 WAIFLLNLLLGWTGIGWVAALIWAL   42 (43)
T ss_pred             hhhHhHHHHHHhHHHHHHHHHHHhc
Confidence            4457899999  9999999999886

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00