Citrus Sinensis ID: 034460

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90----
Protein Sequence
MLTIDHLSLTDSVNVSVGEKEERLMMTGMHTVADIFCVGCGSIVGWKYETAHEKSQKYKEGKSVLERFKVSGPDGSNYWVSHEAHVGGSDADDA
Secondary Structure (PSIPRED)
ccccccccccccccccccccccEEEEcccEEEEEEEcccccccEEEEEEHHcccccccccccEEEEEccEEccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccEEEEEcccEEEEEcccHHHHHHHcccccHHHEEEHccccEEEEEEEEccHcccccccccEEEEEEEEEcccccccEEcccccccccccccc
Coil and Loop (DISEMBL)
mltidhlsltdsvnvsvgeKEERLMMTGMHTVADIFCVGCGSIVGWKYETAHEKSQKYKEGKSVLERFkvsgpdgsnywvsheahvggsdadda
Flexible Loop (DISEMBL)
mltidhlsltdsvnvsvGEKEERLMMTGMHTVADIFCVGCGSIVGWKYETaheksqkykegksvLERFKvsgpdgsnywvsheahvggsdadda
Low Complexity Region (SEG)
MLTIDHLSLTDSVNVSVGEKEERLMMTGMHTVADIFCVGCGSIVGWKYETAHEKSQKYKEGKSVLERFKVSGPDGSNYWVSHEAHVGGSDADDA
Disordered region (IsUnstruct)
**********************RLMMTGMHTVADIFCVGCGSIVGWKYETA**************************YWV**************
Disordered Region (DISOPRED)
MLTIDHLSLTDSVNVSVGEKEERLMMTGMHTVADIFCVGCGSIVGWKYETAHEKSQKYKEGKSVLERFKVSGPDGSNYW***************
Disordered Region (DISEMBL)
MLTIDHLSLTDSVNVSVGEKEERLMMTGMHTVADIFCVGCGSIVGWKYETA*********GKSVLERFKVSGPDGSNYWVSHEAHVGGSDADDA
Disordered Region (DISPRO)
MLTIDHLSLTDSVNVSVGEKEERLMMTGMHTVADIFCVGCGSIVGWKYETAHEKSQKYKEGKSVLERFKVSGPDGS******************
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
oooooooooooooohhhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MLTIDHLSLTDSVNVSVGEKEERLMMTGMHTVADIFCVGCGSIVGWKYETAHEKSQKYKEGKSVLERFKVSGPDGSNYWVSHEAHVGGSDADDA
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	94	2.2.26 [Sep-21-2011]
P59234	129	Protein yippee-like OS=So	N/A	no	0.904	0.658	0.8	7e-36
Q9C777	129	Protein yippee-like At3g1	no	no	0.914	0.666	0.697	1e-30
Q9LY56	121	Protein yippee-like At3g5	no	no	0.829	0.644	0.674	8e-26
Q9SR97	128	Protein yippee-like At3g0	no	no	0.904	0.664	0.623	7e-25
Q9FN32	129	Protein yippee-like At5g5	no	no	0.914	0.666	0.558	2e-20
Q9T096	106	Protein yippee-like At4g2	no	no	0.702	0.622	0.530	4e-15
Q8S5M8	119	Putative yippee-like prot	no	no	0.617	0.487	0.551	6e-15
Q5XID5	127	Protein yippee-like 4 OS=	yes	no	0.574	0.425	0.611	1e-14
Q65Z93	127	Protein yippee-like 4 OS=	yes	no	0.574	0.425	0.611	1e-14
Q96NS1	127	Protein yippee-like 4 OS=	yes	no	0.574	0.425	0.611	1e-14

>sp|P59234|YIPL_SOLTU Protein yippee-like OS=Solanum tuberosum PE=2 SV=1

 Score =  149 bits (375), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 68/85 (80%), Positives = 75/85 (88%)

Query: 9   LTDSVNVSVGEKEERLMMTGMHTVADIFCVGCGSIVGWKYETAHEKSQKYKEGKSVLERF 68
            +  VNV+ GE E R+MMTGMHTVADIFCV CGSIVGWKYETAHEKSQKYKEGKSVLERF
Sbjct: 44  FSKVVNVTSGEIENRMMMTGMHTVADIFCVCCGSIVGWKYETAHEKSQKYKEGKSVLERF 103

Query: 69  KVSGPDGSNYWVSHEAHVGGSDADD 93
           K++GPDGS+YW SH+ HV GSDADD
Sbjct: 104 KITGPDGSHYWASHDTHVAGSDADD 128

Solanum tuberosum (taxid: 4113)

>sp|Q9C777|YIPL3_ARATH Protein yippee-like At3g11230 OS=Arabidopsis thaliana GN=At3g11230 PE=2 SV=1

 Score =  131 bits (330), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 60/86 (69%), Positives = 69/86 (80%)

Query: 9   LTDSVNVSVGEKEERLMMTGMHTVADIFCVGCGSIVGWKYETAHEKSQKYKEGKSVLERF 68
            +  VNV  G+KE+R+MMTGMHTV DI+CV CGS VGWKYE A EK+QKYKEGKSVLER+
Sbjct: 44  FSKVVNVYAGKKEDRMMMTGMHTVVDIYCVKCGSYVGWKYEFAFEKNQKYKEGKSVLERY 103

Query: 69  KVSGPDGSNYWVSHEAHVGGSDADDA 94
           KV GPDG+NYWV+ E   G SD DDA
Sbjct: 104 KVWGPDGNNYWVAQEVEAGDSDTDDA 129

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LY56|YIPL4_ARATH Protein yippee-like At3g55890 OS=Arabidopsis thaliana GN=At3g55890 PE=2 SV=1

 Score =  115 bits (288), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 58/86 (67%), Positives = 65/86 (75%), Gaps = 8/86 (9%)

Query: 9   LTDSVNVSVGEKEERLMMTGMHTVADIFCVGCGSIVGWKYETAHEKSQKYKEGKSVLERF 68
             + VNVSVGEKE+R+M+TG+H V DIFCVGCGS VGWKYE AHEKSQKYKEGKSVLE +
Sbjct: 44  FNNVVNVSVGEKEDRMMITGLHNVVDIFCVGCGSNVGWKYEFAHEKSQKYKEGKSVLELY 103

Query: 69  KVSGPDGSNYWVSHEAHVGGSDADDA 94
           K+SGP  SN  V        SD DDA
Sbjct: 104 KISGPHDSNDLV--------SDGDDA 121

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SR97|YIPL1_ARATH Protein yippee-like At3g08990 OS=Arabidopsis thaliana GN=At3g08990 PE=2 SV=2

 Score =  112 bits (280), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 53/85 (62%), Positives = 66/85 (77%)

Query: 9   LTDSVNVSVGEKEERLMMTGMHTVADIFCVGCGSIVGWKYETAHEKSQKYKEGKSVLERF 68
             + VNV+VGEKE R+M+TG HTVADIFCV CGS+VGWKYE A++KSQKYKEGK +LERF
Sbjct: 44  FDNVVNVTVGEKEHRVMITGWHTVADIFCVSCGSLVGWKYEIAYDKSQKYKEGKFILERF 103

Query: 69  KVSGPDGSNYWVSHEAHVGGSDADD 93
           KV GP G  Y ++    + GSD ++
Sbjct: 104 KVLGPYGGGYDMNQNEPMTGSDDEE 128

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FN32|YIPL7_ARATH Protein yippee-like At5g53940 OS=Arabidopsis thaliana GN=At5g53940 PE=2 SV=1

 Score = 97.8 bits (242), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 48/86 (55%), Positives = 60/86 (69%)

Query: 9   LTDSVNVSVGEKEERLMMTGMHTVADIFCVGCGSIVGWKYETAHEKSQKYKEGKSVLERF 68
              SVN+S+G  EERLM++GMHTVADIFC  CG  VGWKYE+AHEK+QKYKEGK VLER 
Sbjct: 44  FNRSVNISMGPLEERLMLSGMHTVADIFCCCCGQNVGWKYESAHEKAQKYKEGKFVLERG 103

Query: 69  KVSGPDGSNYWVSHEAHVGGSDADDA 94
           ++      +  V  + H   SD +D+
Sbjct: 104 RIVDEIDLSTEVYIDTHGSTSDTEDS 129

Arabidopsis thaliana (taxid: 3702)

>sp|Q9T096|YIPL6_ARATH Protein yippee-like At4g27745 OS=Arabidopsis thaliana GN=At4g27745 PE=3 SV=2

 Score = 80.1 bits (196), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 35/66 (53%), Positives = 48/66 (72%)

Query: 9   LTDSVNVSVGEKEERLMMTGMHTVADIFCVGCGSIVGWKYETAHEKSQKYKEGKSVLERF 68
            + ++N+ VG KE+R ++TG+HTVADI CV C   +GWKYE A+E SQKYKEGK + E+ 
Sbjct: 40  FSHAMNIVVGPKEDRNLLTGLHTVADISCVDCNEPLGWKYERAYETSQKYKEGKFIFEKA 99

Query: 69  KVSGPD 74
           K+   D
Sbjct: 100 KIVKED 105

Arabidopsis thaliana (taxid: 3702)

>sp|Q8S5M8|YIPL_ORYSJ Putative yippee-like protein Os10g0369500 OS=Oryza sativa subsp. japonica GN=Os10g0369500 PE=3 SV=1

 Score = 79.3 bits (194), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 32/58 (55%), Positives = 47/58 (81%)

Query: 13  VNVSVGEKEERLMMTGMHTVADIFCVGCGSIVGWKYETAHEKSQKYKEGKSVLERFKV 70
           VN+S+G  E+R +MTG+HTV DI+C  C  I+GW+YE A+E+S+KYKEGK +LE+ ++
Sbjct: 57  VNISLGPNEDRYLMTGLHTVKDIYCSCCQQILGWRYEKAYEESEKYKEGKFILEKARM 114

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q5XID5|YPEL4_RAT Protein yippee-like 4 OS=Rattus norvegicus GN=Ypel4 PE=2 SV=1

 Score = 78.6 bits (192), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 33/54 (61%), Positives = 42/54 (77%)

Query: 13  VNVSVGEKEERLMMTGMHTVADIFCVGCGSIVGWKYETAHEKSQKYKEGKSVLE 66
           VNV  G  E+RL++TG+H+VADIFC  C + +GWKYE A E SQKYKEGK ++E
Sbjct: 63  VNVGCGPAEQRLLLTGLHSVADIFCESCKTTLGWKYEQAFETSQKYKEGKYIIE 116

Rattus norvegicus (taxid: 10116)

>sp|Q65Z93|YPEL4_MOUSE Protein yippee-like 4 OS=Mus musculus GN=Ypel4 PE=2 SV=1

 Score = 78.6 bits (192), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 33/54 (61%), Positives = 42/54 (77%)

Query: 13  VNVSVGEKEERLMMTGMHTVADIFCVGCGSIVGWKYETAHEKSQKYKEGKSVLE 66
           VNV  G  E+RL++TG+H+VADIFC  C + +GWKYE A E SQKYKEGK ++E
Sbjct: 63  VNVGCGPAEQRLLLTGLHSVADIFCESCKTTLGWKYEQAFETSQKYKEGKYIIE 116

Mus musculus (taxid: 10090)

>sp|Q96NS1|YPEL4_HUMAN Protein yippee-like 4 OS=Homo sapiens GN=YPEL4 PE=2 SV=1

 Score = 78.2 bits (191), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 33/54 (61%), Positives = 42/54 (77%)

Query: 13  VNVSVGEKEERLMMTGMHTVADIFCVGCGSIVGWKYETAHEKSQKYKEGKSVLE 66
           VNV  G  E+RL++TG+H+VADIFC  C + +GWKYE A E SQKYKEGK ++E
Sbjct: 63  VNVGCGPAEQRLLLTGLHSVADIFCESCKTTLGWKYEQAFETSQKYKEGKYIIE 116

Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	94
255571913	129	fad NAD binding oxidoreductases, putativ	0.872	0.635	0.902	9e-38
225448392	129	PREDICTED: protein yippee-like isoform 1	0.872	0.635	0.902	2e-37
388508556	129	unknown [Lotus japonicus]	0.872	0.635	0.841	9e-37
388513849	129	unknown [Lotus japonicus]	0.872	0.635	0.841	1e-36
351722006	129	uncharacterized protein LOC100305552 [Gl	0.872	0.635	0.878	2e-36
356539955	129	PREDICTED: protein yippee-like [Glycine	0.914	0.666	0.837	1e-35
356501150	132	PREDICTED: protein yippee-like isoform 1	0.914	0.651	0.820	2e-35
224109330	130	predicted protein [Populus trichocarpa]	0.872	0.630	0.879	2e-35
15225631	130	yippee-like protein [Arabidopsis thalian	0.872	0.630	0.867	5e-35
297823923	130	yippee family protein [Arabidopsis lyrat	0.861	0.623	0.865	8e-35

>gi|255571913|ref|XP_002526899.1| fad NAD binding oxidoreductases, putative [Ricinus communis] gi|223533798|gb|EEF35530.1| fad NAD binding oxidoreductases, putative [Ricinus communis]

 Score =  160 bits (405), Expect = 9e-38,   Method: Compositional matrix adjust.
 Identities = 74/82 (90%), Positives = 80/82 (97%)

Query: 13  VNVSVGEKEERLMMTGMHTVADIFCVGCGSIVGWKYETAHEKSQKYKEGKSVLERFKVSG 72
           VNVSVG  EER+M+TG+HTVADIFCVGCGSIVGWKYETAHEKSQKYKEGKSVLERFKVSG
Sbjct: 48  VNVSVGVNEERMMLTGLHTVADIFCVGCGSIVGWKYETAHEKSQKYKEGKSVLERFKVSG 107

Query: 73  PDGSNYWVSHEAHVGGSDADDA 94
           PDGS+YW++HEAHVGGSDADDA
Sbjct: 108 PDGSSYWINHEAHVGGSDADDA 129

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225448392|ref|XP_002273048.1| PREDICTED: protein yippee-like isoform 1 [Vitis vinifera] gi|225448394|ref|XP_002273272.1| PREDICTED: protein yippee-like isoform 2 [Vitis vinifera] gi|297736625|emb|CBI25496.3| unnamed protein product [Vitis vinifera]

 Score =  159 bits (402), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 74/82 (90%), Positives = 79/82 (96%)

Query: 13  VNVSVGEKEERLMMTGMHTVADIFCVGCGSIVGWKYETAHEKSQKYKEGKSVLERFKVSG 72
           VNVSVG  EER+MMTGMHTVADIFCVGCGSIVGW+YETAHEK+QKYKEGKSVLERFKVSG
Sbjct: 48  VNVSVGVHEERMMMTGMHTVADIFCVGCGSIVGWRYETAHEKAQKYKEGKSVLERFKVSG 107

Query: 73  PDGSNYWVSHEAHVGGSDADDA 94
           PDGSNYW++ EAHVGGSDADDA
Sbjct: 108 PDGSNYWITPEAHVGGSDADDA 129

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388508556|gb|AFK42344.1| unknown [Lotus japonicus]

 Score =  157 bits (396), Expect = 9e-37,   Method: Compositional matrix adjust.
 Identities = 69/82 (84%), Positives = 81/82 (98%)

Query: 13  VNVSVGEKEERLMMTGMHTVADIFCVGCGSIVGWKYETAHEKSQKYKEGKSVLERFKVSG 72
           VN+S+GEKE+R+MMTG+HTVADIFCVGCGS+VGWKYETAH+K QKYKEGKSVLER+K+SG
Sbjct: 48  VNISLGEKEDRMMMTGLHTVADIFCVGCGSMVGWKYETAHDKGQKYKEGKSVLERYKMSG 107

Query: 73  PDGSNYWVSHEAHVGGSDADDA 94
           PDGSNYW+SHEA++GGSDADDA
Sbjct: 108 PDGSNYWISHEANIGGSDADDA 129

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388513849|gb|AFK44986.1| unknown [Lotus japonicus]

 Score =  157 bits (396), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 69/82 (84%), Positives = 81/82 (98%)

Query: 13  VNVSVGEKEERLMMTGMHTVADIFCVGCGSIVGWKYETAHEKSQKYKEGKSVLERFKVSG 72
           VN+S+GEKE+R+MMTG+HTVADIFCVGCGS+VGWKYETAH+K QKYKEGKSVLER+K+SG
Sbjct: 48  VNISLGEKEDRMMMTGLHTVADIFCVGCGSMVGWKYETAHDKGQKYKEGKSVLERYKMSG 107

Query: 73  PDGSNYWVSHEAHVGGSDADDA 94
           PDGSNYW+SHEA++GGSDADDA
Sbjct: 108 PDGSNYWISHEANIGGSDADDA 129

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351722006|ref|NP_001236973.1| uncharacterized protein LOC100305552 [Glycine max] gi|255625885|gb|ACU13287.1| unknown [Glycine max]

 Score =  155 bits (393), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 72/82 (87%), Positives = 80/82 (97%)

Query: 13  VNVSVGEKEERLMMTGMHTVADIFCVGCGSIVGWKYETAHEKSQKYKEGKSVLERFKVSG 72
           VNVS+GE E+R MMTG+HTVADIFCVGCGSIVGWKYETA+EK+QKYKEGKSVLER+KVSG
Sbjct: 48  VNVSIGEMEDRPMMTGLHTVADIFCVGCGSIVGWKYETAYEKNQKYKEGKSVLERYKVSG 107

Query: 73  PDGSNYWVSHEAHVGGSDADDA 94
           PDGSNYW+S+EAHVGGSDADDA
Sbjct: 108 PDGSNYWISNEAHVGGSDADDA 129

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356539955|ref|XP_003538458.1| PREDICTED: protein yippee-like [Glycine max]

 Score =  153 bits (387), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 72/86 (83%), Positives = 80/86 (93%)

Query: 9   LTDSVNVSVGEKEERLMMTGMHTVADIFCVGCGSIVGWKYETAHEKSQKYKEGKSVLERF 68
             + VNVSVGE E+R MMTG+HTVADIFCVGCGSIVGWKYETA+EK+QKYKEGKSVLER+
Sbjct: 44  FNNVVNVSVGEMEDRPMMTGLHTVADIFCVGCGSIVGWKYETAYEKNQKYKEGKSVLERY 103

Query: 69  KVSGPDGSNYWVSHEAHVGGSDADDA 94
           KVSGPDGSNY +S+EAHVGGSDADDA
Sbjct: 104 KVSGPDGSNYLISNEAHVGGSDADDA 129

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356501150|ref|XP_003519391.1| PREDICTED: protein yippee-like isoform 1 [Glycine max] gi|356501152|ref|XP_003519392.1| PREDICTED: protein yippee-like isoform 2 [Glycine max]

 Score =  153 bits (386), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 73/89 (82%), Positives = 80/89 (89%), Gaps = 3/89 (3%)

Query: 9   LTDSVNVSVGEKEERLMMTGMHTVADIFCVGCGSIVGWKYETAHEKSQKYKEGKSVLERF 68
            +  VNV+VG  E+R M+TGMHTVADIFCVGCGSIVGW+YETAHEKSQKYKEGKSVLER+
Sbjct: 44  FSKVVNVTVGVNEDRQMLTGMHTVADIFCVGCGSIVGWRYETAHEKSQKYKEGKSVLERY 103

Query: 69  KVSGPDG---SNYWVSHEAHVGGSDADDA 94
           KVSGPDG   +NYWVSHEAHVGGSDADDA
Sbjct: 104 KVSGPDGNNNNNYWVSHEAHVGGSDADDA 132

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224109330|ref|XP_002315161.1| predicted protein [Populus trichocarpa] gi|118481839|gb|ABK92856.1| unknown [Populus trichocarpa] gi|222864201|gb|EEF01332.1| predicted protein [Populus trichocarpa]

 Score =  152 bits (385), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 73/83 (87%), Positives = 79/83 (95%), Gaps = 1/83 (1%)

Query: 13  VNVSVGEKEERLMMTGMHTVADIFCVGCGSIVGWKYETAHEKSQKYKEGKSVLERFKVSG 72
           VNV VGEKEER+M+TG+HTVADIFCVGCGSIVGWKYETAHEKSQKYKEGKSVLERFKVSG
Sbjct: 48  VNVFVGEKEERIMITGLHTVADIFCVGCGSIVGWKYETAHEKSQKYKEGKSVLERFKVSG 107

Query: 73  PDGSNYWVSHE-AHVGGSDADDA 94
           PDGS+YWV+HE  H+GGSDADD 
Sbjct: 108 PDGSHYWVNHEHHHIGGSDADDV 130

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15225631|ref|NP_181540.1| yippee-like protein [Arabidopsis thaliana] gi|21553745|gb|AAM62838.1| Yippee-like protein [Arabidopsis thaliana] gi|25054939|gb|AAN71946.1| unknown protein [Arabidopsis thaliana] gi|222424197|dbj|BAH20057.1| AT2G40110 [Arabidopsis thaliana] gi|330254686|gb|AEC09780.1| yippee-like protein [Arabidopsis thaliana]

 Score =  151 bits (382), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 72/83 (86%), Positives = 76/83 (91%), Gaps = 1/83 (1%)

Query: 13  VNVSVGEKEERLMMTGMHTVADIFCVGCGSIVGWKYETAHEKSQKYKEGKSVLERFKVSG 72
            NVS+GE EERLMMTG HTVADIFCV CGSIVGWKYETAHEK+QKYKEGKSVLERFK+SG
Sbjct: 48  ANVSIGETEERLMMTGKHTVADIFCVSCGSIVGWKYETAHEKNQKYKEGKSVLERFKISG 107

Query: 73  PDGSNYWV-SHEAHVGGSDADDA 94
           PDGSNYWV SH  H+GGSDADDA
Sbjct: 108 PDGSNYWVSSHGRHIGGSDADDA 130

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297823923|ref|XP_002879844.1| yippee family protein [Arabidopsis lyrata subsp. lyrata] gi|297325683|gb|EFH56103.1| yippee family protein [Arabidopsis lyrata subsp. lyrata]

 Score =  150 bits (379), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 71/82 (86%), Positives = 76/82 (92%), Gaps = 1/82 (1%)

Query: 14  NVSVGEKEERLMMTGMHTVADIFCVGCGSIVGWKYETAHEKSQKYKEGKSVLERFKVSGP 73
           NVS+GE EERLMMTG HTVADIFCV CGSIVGW+YETAHEK+QKYKEGKSVLERFK+SGP
Sbjct: 49  NVSIGETEERLMMTGKHTVADIFCVSCGSIVGWRYETAHEKNQKYKEGKSVLERFKISGP 108

Query: 74  DGSNYWV-SHEAHVGGSDADDA 94
           DGSNYWV SH  H+GGSDADDA
Sbjct: 109 DGSNYWVSSHGRHIGGSDADDA 130

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	94
TAIR|locus:2047736	130	AT2G40110 "AT2G40110" [Arabido	0.861	0.623	0.878	1.7e-36
TAIR|locus:2074708	162	AT3G11230 "AT3G11230" [Arabido	0.872	0.506	0.731	3.8e-30
TAIR|locus:2095269	128	AT3G08990 "AT3G08990" [Arabido	0.861	0.632	0.654	2.2e-25
TAIR|locus:2082053	121	AT3G55890 "AT3G55890" [Arabido	0.734	0.570	0.782	2.2e-25
TAIR|locus:2154674	129	AT5G53940 [Arabidopsis thalian	0.882	0.643	0.578	1e-20
DICTYBASE|DDB_G0267990	129	ypel "yippee-like protein" [Di	0.744	0.542	0.5	2.3e-16
TAIR|locus:1009023354	106	AT4G27745 "AT4G27745" [Arabido	0.670	0.594	0.555	9.8e-16
UNIPROTKB|Q96NS1	127	YPEL4 "Protein yippee-like 4"	0.574	0.425	0.611	8.8e-15
MGI|MGI:3605071	127	Ypel4 "yippee-like 4 (Drosophi	0.574	0.425	0.611	8.8e-15
RGD|1560142	127	Ypel4 "yippee-like 4 (Drosophi	0.574	0.425	0.611	8.8e-15

TAIR|locus:2047736 AT2G40110 "AT2G40110" [Arabidopsis thaliana (taxid:3702)]

 Score = 393 (143.4 bits), Expect = 1.7e-36, P = 1.7e-36
 Identities = 72/82 (87%), Positives = 76/82 (92%)

Query:    14 NVSVGEKEERLMMTGMHTVADIFCVGCGSIVGWKYETAHEKSQKYKEGKSVLERFKVSGP 73
             NVS+GE EERLMMTG HTVADIFCV CGSIVGWKYETAHEK+QKYKEGKSVLERFK+SGP
Sbjct:    49 NVSIGETEERLMMTGKHTVADIFCVSCGSIVGWKYETAHEKNQKYKEGKSVLERFKISGP 108

Query:    74 DGSNYWVS-HEAHVGGSDADDA 94
             DGSNYWVS H  H+GGSDADDA
Sbjct:   109 DGSNYWVSSHGRHIGGSDADDA 130

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2074708 AT3G11230 "AT3G11230" [Arabidopsis thaliana (taxid:3702)]

 Score = 333 (122.3 bits), Expect = 3.8e-30, P = 3.8e-30
 Identities = 60/82 (73%), Positives = 68/82 (82%)

Query:    13 VNVSVGEKEERLMMTGMHTVADIFCVGCGSIVGWKYETAHEKSQKYKEGKSVLERFKVSG 72
             VNV  G+KE+R+MMTGMHTV DI+CV CGS VGWKYE A EK+QKYKEGKSVLER+KV G
Sbjct:    81 VNVYAGKKEDRMMMTGMHTVVDIYCVKCGSYVGWKYEFAFEKNQKYKEGKSVLERYKVWG 140

Query:    73 PDGSNYWVSHEAHVGGSDADDA 94
             PDG+NYWV+ E   G SD DDA
Sbjct:   141 PDGNNYWVAQEVEAGDSDTDDA 162

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2095269 AT3G08990 "AT3G08990" [Arabidopsis thaliana (taxid:3702)]

 Score = 288 (106.4 bits), Expect = 2.2e-25, P = 2.2e-25
 Identities = 53/81 (65%), Positives = 65/81 (80%)

Query:    13 VNVSVGEKEERLMMTGMHTVADIFCVGCGSIVGWKYETAHEKSQKYKEGKSVLERFKVSG 72
             VNV+VGEKE R+M+TG HTVADIFCV CGS+VGWKYE A++KSQKYKEGK +LERFKV G
Sbjct:    48 VNVTVGEKEHRVMITGWHTVADIFCVSCGSLVGWKYEIAYDKSQKYKEGKFILERFKVLG 107

Query:    73 PDGSNYWVSHEAHVGGSDADD 93
             P G  Y ++    + GSD ++
Sbjct:   108 PYGGGYDMNQNEPMTGSDDEE 128

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2082053 AT3G55890 "AT3G55890" [Arabidopsis thaliana (taxid:3702)]

 Score = 288 (106.4 bits), Expect = 2.2e-25, P = 2.2e-25
 Identities = 54/69 (78%), Positives = 60/69 (86%)

Query:    13 VNVSVGEKEERLMMTGMHTVADIFCVGCGSIVGWKYETAHEKSQKYKEGKSVLERFKVSG 72
             VNVSVGEKE+R+M+TG+H V DIFCVGCGS VGWKYE AHEKSQKYKEGKSVLE +K+SG
Sbjct:    48 VNVSVGEKEDRMMITGLHNVVDIFCVGCGSNVGWKYEFAHEKSQKYKEGKSVLELYKISG 107

Query:    73 PDGSNYWVS 81
             P  SN  VS
Sbjct:   108 PHDSNDLVS 116

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0006635 "fatty acid beta-oxidation" evidence=RCA

GO:0009830 "cell wall modification involved in abscission" evidence=RCA

TAIR|locus:2154674 AT5G53940 [Arabidopsis thaliana (taxid:3702)]

 Score = 244 (91.0 bits), Expect = 1.0e-20, P = 1.0e-20
 Identities = 48/83 (57%), Positives = 60/83 (72%)

Query:    12 SVNVSVGEKEERLMMTGMHTVADIFCVGCGSIVGWKYETAHEKSQKYKEGKSVLERFKVS 71
             SVN+S+G  EERLM++GMHTVADIFC  CG  VGWKYE+AHEK+QKYKEGK VLER ++ 
Sbjct:    47 SVNISMGPLEERLMLSGMHTVADIFCCCCGQNVGWKYESAHEKAQKYKEGKFVLERGRIV 106

Query:    72 GPDGSNYWVSHEAHVGGSDADDA 94
                  +  V  + H   SD +D+
Sbjct:   107 DEIDLSTEVYIDTHGSTSDTEDS 129

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

DICTYBASE|DDB_G0267990 ypel "yippee-like protein" [Dictyostelium discoideum (taxid:44689)]

 Score = 203 (76.5 bits), Expect = 2.3e-16, P = 2.3e-16
 Identities = 36/72 (50%), Positives = 49/72 (68%)

Query:    14 NVSVGEKEERLMMTGMHTVADIFCVGCGSIVGWKYETAHEKSQKYKEGKSVLERFKVSGP 73
             N++VG  E+R + TGMH VADI+C+ CG  +GWKYE A E+SQKYK GK +LE+ K+   
Sbjct:    50 NITVGPSEDRTLTTGMHIVADIYCIDCGETLGWKYEFAKEESQKYKVGKYILEKAKIQKE 109

Query:    74 DGSNYWVSHEAH 85
                N+   H+ H
Sbjct:   110 --VNFGTQHQPH 119

GO:0008150 "biological_process" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0003674 "molecular_function" evidence=ND

TAIR|locus:1009023354 AT4G27745 "AT4G27745" [Arabidopsis thaliana (taxid:3702)]

 Score = 197 (74.4 bits), Expect = 9.8e-16, P = 9.8e-16
 Identities = 35/63 (55%), Positives = 47/63 (74%)

Query:    12 SVNVSVGEKEERLMMTGMHTVADIFCVGCGSIVGWKYETAHEKSQKYKEGKSVLERFKVS 71
             ++N+ VG KE+R ++TG+HTVADI CV C   +GWKYE A+E SQKYKEGK + E+ K+ 
Sbjct:    43 AMNIVVGPKEDRNLLTGLHTVADISCVDCNEPLGWKYERAYETSQKYKEGKFIFEKAKIV 102

Query:    72 GPD 74
               D
Sbjct:   103 KED 105

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|Q96NS1 YPEL4 "Protein yippee-like 4" [Homo sapiens (taxid:9606)]

 Score = 188 (71.2 bits), Expect = 8.8e-15, P = 8.8e-15
 Identities = 33/54 (61%), Positives = 42/54 (77%)

Query:    13 VNVSVGEKEERLMMTGMHTVADIFCVGCGSIVGWKYETAHEKSQKYKEGKSVLE 66
             VNV  G  E+RL++TG+H+VADIFC  C + +GWKYE A E SQKYKEGK ++E
Sbjct:    63 VNVGCGPAEQRLLLTGLHSVADIFCESCKTTLGWKYEQAFETSQKYKEGKYIIE 116

GO:0005730 "nucleolus" evidence=IEA

MGI|MGI:3605071 Ypel4 "yippee-like 4 (Drosophila)" [Mus musculus (taxid:10090)]

 Score = 188 (71.2 bits), Expect = 8.8e-15, P = 8.8e-15
 Identities = 33/54 (61%), Positives = 42/54 (77%)

Query:    13 VNVSVGEKEERLMMTGMHTVADIFCVGCGSIVGWKYETAHEKSQKYKEGKSVLE 66
             VNV  G  E+RL++TG+H+VADIFC  C + +GWKYE A E SQKYKEGK ++E
Sbjct:    63 VNVGCGPAEQRLLLTGLHSVADIFCESCKTTLGWKYEQAFETSQKYKEGKYIIE 116

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0005634 "nucleus" evidence=IEA

GO:0008150 "biological_process" evidence=ND

RGD|1560142 Ypel4 "yippee-like 4 (Drosophila)" [Rattus norvegicus (taxid:10116)]

 Score = 188 (71.2 bits), Expect = 8.8e-15, P = 8.8e-15
 Identities = 33/54 (61%), Positives = 42/54 (77%)

Query:    13 VNVSVGEKEERLMMTGMHTVADIFCVGCGSIVGWKYETAHEKSQKYKEGKSVLE 66
             VNV  G  E+RL++TG+H+VADIFC  C + +GWKYE A E SQKYKEGK ++E
Sbjct:    63 VNVGCGPAEQRLLLTGLHSVADIFCESCKTTLGWKYEQAFETSQKYKEGKYIIE 116

GO:0005730 "nucleolus" evidence=IEA

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Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P59234	YIPL_SOLTU	No assigned EC number	0.8	0.9042	0.6589	N/A	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00029268001 SubName- Full=Chromosome chr13 scaffold_48, whole genome shotgun sequence; (129 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	94
pfam03226	109	pfam03226, Yippee, Yippee putative zinc-binding pr	3e-37

>gnl|CDD|217436 pfam03226, Yippee, Yippee putative zinc-binding protein

 Score =  120 bits (303), Expect = 3e-37
 Identities = 39/61 (63%), Positives = 49/61 (80%)

Query: 13  VNVSVGEKEERLMMTGMHTVADIFCVGCGSIVGWKYETAHEKSQKYKEGKSVLERFKVSG 72
           VNV  GE E+R M+TG+HTV DIFCVGCG+ +GWKYE A+E+SQKYKEGK +LER  ++ 
Sbjct: 49  VNVVEGEPEDRQMLTGLHTVRDIFCVGCGTTLGWKYEFAYEESQKYKEGKFILERALITK 108

Query: 73  P 73
            
Sbjct: 109 I 109

Length = 109

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	94
KOG3399	122	consensus Predicted Yippee-type zinc-binding prote	100.0
PF03226	96	Yippee-Mis18: Yippee zinc-binding/DNA-binding /Mis	99.9
PF11648	123	RIG-I_C-RD: C-terminal domain of RIG-I; InterPro:	81.61

>KOG3399 consensus Predicted Yippee-type zinc-binding protein [General function prediction only]

Probab=100.00  E-value=1.4e-38  Score=225.41  Aligned_cols=80  Identities=54%  Similarity=0.830  Sum_probs=77.8

Q ss_pred             cccccccccccccCcCCccceEeeeeceEEeeeeeeecCCceeeeeeeecccccCcccceEEEEecceeCCCCCcceeee
Q 034460            3 TIDHLSLTDSVNVSVGEKEERLMMTGMHTVADIFCVGCGSIVGWKYETAHEKSQKYKEGKSVLERFKVSGPDGSNYWVSH   82 (94)
Q Consensus         3 t~~~~lf~~vvNv~~g~~e~r~m~TG~H~V~DI~C~~C~~~lGWkY~~A~e~sQKYKEGKfILE~~~i~~~~g~~~~~~~   82 (94)
                      +|+||||++|+||+.|+.|+|.|+||+|+|+||+|..|++.|||||+.|||+||||||||||||+++|.+++|.+.|..+
T Consensus        40 ~G~AyLf~~vvNv~~ge~e~R~mlTG~h~V~di~C~~C~~~~GWkYe~a~e~sQkyKEGk~ilE~~~i~~~~g~~~~~~~  119 (122)
T KOG3399|consen   40 TGRAYLFNRVVNVIIGETEQRVMLTGLHTVADIFCVLCGTGLGWKYEHAYEKSQKYKEGKFILELAEIFKPEGWDLEVGA  119 (122)
T ss_pred             CCcchhhhhhhhheechHHHHHHHHhHHhhcchhhhhcCCCcceeeeeccCchhhhcCcchHHHHHHhcCCCCchhhcCC
Confidence            68999999999999999999999999999999999999999999999999999999999999999999999999998844

>PF03226 Yippee-Mis18: Yippee zinc-binding/DNA-binding /Mis18, centromere assembly; InterPro: IPR004910 This entry represents the Yippee-like (YPEL) family of putative zinc-binding proteins which is highly conserved among eukaryotes

Probab=99.90  E-value=2.1e-24  Score=143.07  Aligned_cols=64  Identities=53%  Similarity=0.900  Sum_probs=60.7

Q ss_pred             ccccccccccccCcCCccceEeeeec----eEEeeeeeeecCCceeeeeeeecccccCcccceEEEEeccee
Q 034460            4 IDHLSLTDSVNVSVGEKEERLMMTGM----HTVADIFCVGCGSIVGWKYETAHEKSQKYKEGKSVLERFKVS   71 (94)
Q Consensus         4 ~~~~lf~~vvNv~~g~~e~r~m~TG~----H~V~DI~C~~C~~~lGWkY~~A~e~sQKYKEGKfILE~~~i~   71 (94)
                      +++|||+   ||..+++++|.|+||.    |+|+||+|++|++.|||||++|+++ |+||||+||||++.|.
T Consensus        26 ~~a~l~~---~v~~~~~~~~~~~t~~~~~~~~~~~l~C~~C~~~lGwkY~~a~~~-~~~k~g~file~~~i~   93 (96)
T PF03226_consen   26 GKAYLFN---NVSNGVPVDRELMTGETGGDHTVRDLFCSGCNTILGWKYESAPEE-QKYKEGKFILEKASIS   93 (96)
T ss_pred             ccEEEEe---eeeecccccceEEEeeCCCCEEEEEeEcccCChhHCcEEEEcCHh-HhhhCCEEEEEhhHEE
Confidence            5899998   8888888999999999    9999999999999999999999999 9999999999999885

The first protein in this family to be characterised, the Yippee protein from Drosophila, was identified by yeast interaction trap screen as a protein that physically interacts with moth hemolin []. It was subsequently found to be a member of a highly conserved family of proteins found in diverse eukaryotes including plants, animals and fungi []. Mammals contain five members of this family, YPEL1 to YPEL5, while other organisms tend to contain only two or three members. The mammalian proteins all appear to localise in the nucleus. YPEL1-4 are located in an unknown structure located on or close to the mitotic apparatus in the mitotic phase, whereas in the interphase they are located in the nuclei and nucleoli. In contrast, YPEL5 is localised to the centrosome and nucleus during interphase and at the mitotic spindle during mitosis, suggesting a function distinct from that of YPEL1-4. The localisation of the YPEL proteins suggests a novel, thopugh still unknown, function involved in cell division.

>PF11648 RIG-I_C-RD: C-terminal domain of RIG-I; InterPro: IPR021673 This family of proteins represents the regulatory domain RD of RIG-I, a protein which initiates a signalling cascade that provides essential antiviral protection for the host

Probab=81.61  E-value=1.6  Score=30.52  Aligned_cols=40  Identities=18%  Similarity=0.190  Sum_probs=30.7

Q ss_pred             cccccccCcCCccceEeeeeceEEeeeeeeecCCceeeee
Q 034460            9 LTDSVNVSVGEKEERLMMTGMHTVADIFCVGCGSIVGWKY   48 (94)
Q Consensus         9 f~~vvNv~~g~~e~r~m~TG~H~V~DI~C~~C~~~lGWkY   48 (94)
                      |...+.+...|++.....-+-+....|+|..|+..+|-.+
T Consensus        35 F~~~~~~~~~~~~~~~~~~d~~~~~~I~C~~C~~~wG~~m   74 (123)
T PF11648_consen   35 FWERYIVRPHPKPLQKSFGDWEPNGKIHCKNCGQDWGIMM   74 (123)
T ss_dssp             HHCTEEEEECSSCTSEEESSSEEEEEEEETSTSBEEEEEE
T ss_pred             ceeeEEeccCCccccceecceEeCCEEEcCCCChHhhhhe
Confidence            4466677777766444455788999999999999999755

The RD domain binds viral RNA, activating the RIG-I ATPase by RNA-dependent dimerisation. The structure of RD contains a zinc-binding domain and is thought to confer ligand specificity []. ; GO: 0016817 hydrolase activity, acting on acid anhydrides; PDB: 2RQB_A 3GA3_A 2W4R_D 3EQT_A 2RQA_A 2RMJ_A 3NCU_A 2QFD_C 2QFB_D 3TMI_A ....

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00