Citrus Sinensis ID: 034461

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90----
Protein Sequence
MPSCCEICCEILIAILLPPLGVCLKHGCCTVEFCICLLLTILGYVPGIIYALYAIVFVDRDEYFDEYRRPLKVPYTFTFSAFCLPSSHFSDQLH
Secondary Structure (PSIPRED)
ccccHHHHHHHHHHHHccccEEEEHHccccHHHHHHHHHHHHHHHHHHEEEEEEEEEEcccccccccccccccccccEEEEEEEcccccccccc
Secondary Structure Prediction (SSPRO)
ccccHHHHHHHHHHHHcccHHHHEEcccccHHHHHHHHHHHHHHcccEEEEEEEEEEcccccccccccccccccEEEEEEEEEccccccccccc
Coil and Loop (DISEMBL)
MPSCCEICCEILIAIllpplgvclkhgcctvEFCICLLLTILGYVPGIIYALYAIVFVdrdeyfdeyrrplkvpytftfsafclpsshfsdqlh
Flexible Loop (DISEMBL)
MPSCCEICCEILIAILLPPLGVCLKHGCCTVEFCICLLLTILGYVPGIIYALYAIVFVDRDEYFDEYRRPLKVPYTFTFSAfclpsshfsdqlh
Low Complexity Region (SEG)
MPScceicceiliaillpplGVCLKHGCCTVEFCICLLLTILGYVPGIIYALYAIVFVDRDEYFDEYRRPLKVPYTFTFSAFCLPSSHFSDQLH
Disordered region (IsUnstruct)
***CCEICCEILIAILLPPLGVCLKHGCCTVEFCICLLLTILGYVPGIIYALYAIVFVDRDEYFDEYRRPLKVPYTFTFSAFCLP*********
Disordered Region (DISOPRED)
***CCEICCEILIAILLPPLGVCLKHGCCTVEFCICLLLTILGYVPGIIYALYAIVFVDRD***********VPYTFTF***************
Disordered Region (DISEMBL)
MPSCCEICCEILIAILLPPLGVCLKHGCCTVEFCICLLLTILGYVPGIIYALYAIVFVDRDEYFDEYRRPLKVPYTFTFSAFCLPSSHFSDQLH
Disordered Region (DISPRO)
**SCCEICCEILIAILLPPLGVCLKHGCCTVEFCICLLLTILGYVPGIIYALYAIVFVDRDEYFDEYRRPLKVPYTFTFSAFCLPS********
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooo
Transmembrane Helix (MEMSAT)
oooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MPSCCEICCEILIAILLPPLGVCLKHGCCTVEFCICLLLTILGYVPGIIYALYAIVFVDRDEYFDEYRRPLKVPYTFTFSAFCLPSSHFSDQLH
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	94	2.2.26 [Sep-21-2011]
Q9SUI0	74	UPF0057 membrane protein	no	no	0.755	0.959	0.802	3e-26
O82232	75	UPF0057 membrane protein	no	no	0.755	0.946	0.788	7e-26
Q9M095	73	UPF0057 membrane protein	no	no	0.755	0.972	0.722	4e-20
Q9LRI7	72	Hydrophobic protein OSR8	yes	no	0.617	0.805	0.724	4e-17
Q0DKW8	55	Hydrophobic protein LTI6B	no	no	0.5	0.854	0.75	1e-10
A2Y075	55	Hydrophobic protein LTI6B	N/A	no	0.5	0.854	0.75	1e-10
Q9ZNQ7	54	Hydrophobic protein RCI2A	no	no	0.478	0.833	0.695	8e-10
Q9ZNS6	54	Hydrophobic protein RCI2B	no	no	0.478	0.833	0.695	1e-09
Q9ARD5	54	Low temperature-induced p	N/A	no	0.489	0.851	0.638	1e-09
Q8H5T6	56	Hydrophobic protein LTI6A	no	no	0.574	0.964	0.563	2e-09

>sp|Q9SUI0|RC24_ARATH UPF0057 membrane protein At4g30660 OS=Arabidopsis thaliana GN=At4g30660 PE=2 SV=1

 Score =  116 bits (291), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 57/71 (80%), Positives = 63/71 (88%)

Query: 1  MPSCCEICCEILIAILLPPLGVCLKHGCCTVEFCICLLLTILGYVPGIIYALYAIVFVDR 60
          MPS CEI CEI+IAILLPPLGVC + GCCTVEF ICL+LTILGYVPGIIYA+Y IVF  R
Sbjct: 1  MPSNCEILCEIIIAILLPPLGVCFRKGCCTVEFLICLVLTILGYVPGIIYAIYVIVFQHR 60

Query: 61 DEYFDEYRRPL 71
          +EYFDEYRRP+
Sbjct: 61 EEYFDEYRRPI 71

Arabidopsis thaliana (taxid: 3702)

>sp|O82232|RC22_ARATH UPF0057 membrane protein At2g24040 OS=Arabidopsis thaliana GN=At2g24040 PE=3 SV=1

 Score =  115 bits (288), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 56/71 (78%), Positives = 64/71 (90%)

Query: 1  MPSCCEICCEILIAILLPPLGVCLKHGCCTVEFCICLLLTILGYVPGIIYALYAIVFVDR 60
          M S CE+CCEI IAILLPP+GVCL+HGCCTVEF ICL+LT LGY+PGIIYA+YAI F+ R
Sbjct: 1  MASSCELCCEIFIAILLPPVGVCLRHGCCTVEFFICLILTCLGYLPGIIYAIYAICFLHR 60

Query: 61 DEYFDEYRRPL 71
          DEYFDEYRRP+
Sbjct: 61 DEYFDEYRRPI 71

Arabidopsis thaliana (taxid: 3702)

>sp|Q9M095|RC23_ARATH UPF0057 membrane protein At4g30650 OS=Arabidopsis thaliana GN=At4g30650 PE=3 SV=1

 Score = 96.7 bits (239), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 52/72 (72%), Positives = 56/72 (77%), Gaps = 1/72 (1%)

Query: 1  MPSCCEICCEILIAILLPPLGVCLKHGCCTVEFCICLLLTILGYVPGIIYALYAIVFVDR 60
          M S  E+ CEILIAILLPPLGVCLK GCCTVEF ICL+LTILGY+PGIIYALY IVF +R
Sbjct: 1  MASNMEVFCEILIAILLPPLGVCLKRGCCTVEFLICLVLTILGYIPGIIYALYVIVFQNR 60

Query: 61 DEYFDEYRRPLK 72
           E   E   PL 
Sbjct: 61 -EGSTELGAPLN 71

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LRI7|OSR8_ORYSJ Hydrophobic protein OSR8 OS=Oryza sativa subsp. japonica GN=OSR8 PE=3 SV=1

 Score = 86.7 bits (213), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 42/58 (72%), Positives = 51/58 (87%)

Query: 10 EILIAILLPPLGVCLKHGCCTVEFCICLLLTILGYVPGIIYALYAIVFVDRDEYFDEY 67
          EIL+AI+LPPLGV L+ GCC++EFCICLLLTILGYVPGIIYA+Y +V +D D+Y  EY
Sbjct: 11 EILLAIILPPLGVFLRFGCCSMEFCICLLLTILGYVPGIIYAVYVLVALDSDQYQREY 68

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q0DKW8|LTI6B_ORYSJ Hydrophobic protein LTI6B OS=Oryza sativa subsp. japonica GN=LTI6B PE=2 SV=1

 Score = 65.1 bits (157), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 36/48 (75%), Positives = 40/48 (83%), Gaps = 1/48 (2%)

Query: 8  CCEILIAILLPPLGVCLKHGCCTVEFCICLLLTILGYVPGIIYALYAI 55
          C +ILIAI+LPPLGV LK GC   EF ICLLLT LGY+PGIIYA+YAI
Sbjct: 7  CIDILIAIILPPLGVFLKFGCGH-EFWICLLLTFLGYIPGIIYAIYAI 53

Plays a role in the regulation of membrane potential. Could mediate a proton leak.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|A2Y075|LTI6B_ORYSI Hydrophobic protein LTI6B OS=Oryza sativa subsp. indica GN=LTI6B PE=3 SV=2

 Score = 65.1 bits (157), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 36/48 (75%), Positives = 40/48 (83%), Gaps = 1/48 (2%)

Query: 8  CCEILIAILLPPLGVCLKHGCCTVEFCICLLLTILGYVPGIIYALYAI 55
          C +ILIAI+LPPLGV LK GC   EF ICLLLT LGY+PGIIYA+YAI
Sbjct: 7  CIDILIAIILPPLGVFLKFGCGH-EFWICLLLTFLGYIPGIIYAIYAI 53

Plays a role in the regulation of membrane potential. Could mediate a proton leak.

Oryza sativa subsp. indica (taxid: 39946)

>sp|Q9ZNQ7|RCI2A_ARATH Hydrophobic protein RCI2A OS=Arabidopsis thaliana GN=RCI2A PE=2 SV=1

 Score = 62.4 bits (150), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 32/46 (69%), Positives = 40/46 (86%), Gaps = 1/46 (2%)

Query: 10 EILIAILLPPLGVCLKHGCCTVEFCICLLLTILGYVPGIIYALYAI 55
          +I+IAILLPPLGV L+ GC  VEF ICL+LT+LGY+PGIIYA+Y +
Sbjct: 8  DIIIAILLPPLGVFLRFGC-GVEFWICLVLTLLGYIPGIIYAIYVL 52

Arabidopsis thaliana (taxid: 3702)

>sp|Q9ZNS6|RCI2B_ARATH Hydrophobic protein RCI2B OS=Arabidopsis thaliana GN=RCI2B PE=2 SV=1

 Score = 62.0 bits (149), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 32/46 (69%), Positives = 39/46 (84%), Gaps = 1/46 (2%)

Query: 10 EILIAILLPPLGVCLKHGCCTVEFCICLLLTILGYVPGIIYALYAI 55
          EI++AI+LPPLGV LK GC  VEF ICL+LT+ GY+PGI+YALY I
Sbjct: 8  EIILAIILPPLGVFLKFGC-KVEFWICLILTLFGYLPGILYALYII 52

Arabidopsis thaliana (taxid: 3702)

>sp|Q9ARD5|LT02_HORVU Low temperature-induced protein lt101.2 OS=Hordeum vulgare GN=LT101.2 PE=2 SV=1

 Score = 61.6 bits (148), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 30/47 (63%), Positives = 41/47 (87%), Gaps = 1/47 (2%)

Query: 10 EILIAILLPPLGVCLKHGCCTVEFCICLLLTILGYVPGIIYALYAIV 56
          E+++AI+LPP+GV L++G   VEF ICLLLT+LGY+PGIIYA+Y +V
Sbjct: 8  EVILAIILPPVGVFLRYGLA-VEFWICLLLTLLGYIPGIIYAVYVLV 53

Hordeum vulgare (taxid: 4513)

>sp|Q8H5T6|LTI6A_ORYSJ Hydrophobic protein LTI6A OS=Oryza sativa subsp. japonica GN=LTI6A PE=2 SV=1

 Score = 61.2 bits (147), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 31/55 (56%), Positives = 39/55 (70%), Gaps = 1/55 (1%)

Query: 1  MPSCCEICCEILIAILLPPLGVCLKHGCCTVEFCICLLLTILGYVPGIIYALYAI 55
          M      C +I++AI+LPPLGV  K GC  +EF ICLLLT  GY+PGIIYA++ I
Sbjct: 1  MADSTATCIDIILAIILPPLGVFFKFGC-GIEFWICLLLTFFGYLPGIIYAVWVI 54

Plays a role in the regulation of membrane potential. Could mediate a proton leak.

Oryza sativa subsp. japonica (taxid: 39947)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	94
357480027	244	Stress-induced hydrophobic peptide [Medi	0.925	0.356	0.747	3e-31
118483765	75	unknown [Populus trichocarpa]	0.787	0.986	0.891	8e-30
224088316	73	stress-induced hydrophobic peptide [Popu	0.755	0.972	0.915	3e-29
313586571	75	stress-induced hydrophobic peptide 1 [He	0.797	1.0	0.88	5e-29
449457875	75	PREDICTED: UPF0057 membrane protein At4g	0.787	0.986	0.878	7e-29
388495520	77	unknown [Medicago truncatula]	0.755	0.922	0.873	9e-29
255577047	75	Hydrophobic protein OSR8, putative [Rici	0.797	1.0	0.866	1e-28
388503944	77	unknown [Medicago truncatula]	0.755	0.922	0.859	2e-28
356500671	75	PREDICTED: UPF0057 membrane protein At4g	0.797	1.0	0.813	4e-28
388498092	78	unknown [Lotus japonicus] gi|388505686|g	0.787	0.948	0.824	7e-28

>gi|357480027|ref|XP_003610299.1| Stress-induced hydrophobic peptide [Medicago truncatula] gi|355511354|gb|AES92496.1| Stress-induced hydrophobic peptide [Medicago truncatula]

 Score =  138 bits (348), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 65/87 (74%), Positives = 75/87 (86%)

Query: 1  MPSCCEICCEILIAILLPPLGVCLKHGCCTVEFCICLLLTILGYVPGIIYALYAIVFVDR 60
          MPS CEICCEI+IA+LLPPLGVCL+HGCCTVEF ICLLLTILGY+PGIIYALYAI+F+DR
Sbjct: 1  MPSRCEICCEIMIAVLLPPLGVCLRHGCCTVEFIICLLLTILGYLPGIIYALYAIIFIDR 60

Query: 61 DEYFDEYRRPLKVPYTFTFSAFCLPSS 87
          D+YFDEYRRPL   +     +  +PSS
Sbjct: 61 DQYFDEYRRPLYNSFVAFHVSTIVPSS 87

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|118483765|gb|ABK93775.1| unknown [Populus trichocarpa]

 Score =  134 bits (337), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 66/74 (89%), Positives = 70/74 (94%)

Query: 1  MPSCCEICCEILIAILLPPLGVCLKHGCCTVEFCICLLLTILGYVPGIIYALYAIVFVDR 60
          MPS CEICCEILIAILLPPLGVC +HGCC+VEFCICLLLTILGYVPGIIYALYAIVF+DR
Sbjct: 1  MPSRCEICCEILIAILLPPLGVCFRHGCCSVEFCICLLLTILGYVPGIIYALYAIVFIDR 60

Query: 61 DEYFDEYRRPLKVP 74
          +EYFDEYRRPL  P
Sbjct: 61 NEYFDEYRRPLYAP 74

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224088316|ref|XP_002308410.1| stress-induced hydrophobic peptide [Populus trichocarpa] gi|222854386|gb|EEE91933.1| stress-induced hydrophobic peptide [Populus trichocarpa]

 Score =  132 bits (332), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 65/71 (91%), Positives = 69/71 (97%)

Query: 1  MPSCCEICCEILIAILLPPLGVCLKHGCCTVEFCICLLLTILGYVPGIIYALYAIVFVDR 60
          MPS CEICCEILIAILLPPLGVC +HGCC+VEFCICLLLTILGYVPGIIYALYAIVF+DR
Sbjct: 1  MPSRCEICCEILIAILLPPLGVCFRHGCCSVEFCICLLLTILGYVPGIIYALYAIVFIDR 60

Query: 61 DEYFDEYRRPL 71
          +EYFDEYRRPL
Sbjct: 61 NEYFDEYRRPL 71

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|313586571|gb|ADR71296.1| stress-induced hydrophobic peptide 1 [Hevea brasiliensis]

 Score =  131 bits (330), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 66/75 (88%), Positives = 69/75 (92%)

Query: 1  MPSCCEICCEILIAILLPPLGVCLKHGCCTVEFCICLLLTILGYVPGIIYALYAIVFVDR 60
          MP+ CEICCEILIAILLPPLGVC +HGCC+VEFCICLLLTILGYVPGIIYALYAIVFVDR
Sbjct: 1  MPTRCEICCEILIAILLPPLGVCFRHGCCSVEFCICLLLTILGYVPGIIYALYAIVFVDR 60

Query: 61 DEYFDEYRRPLKVPY 75
          DEYFDE RRPL   Y
Sbjct: 61 DEYFDESRRPLYSSY 75

Source: Hevea brasiliensis

Species: Hevea brasiliensis

Genus: Hevea

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449457875|ref|XP_004146673.1| PREDICTED: UPF0057 membrane protein At4g30660-like [Cucumis sativus] gi|449503159|ref|XP_004161863.1| PREDICTED: UPF0057 membrane protein At4g30660-like [Cucumis sativus]

 Score =  130 bits (328), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 65/74 (87%), Positives = 69/74 (93%)

Query: 1  MPSCCEICCEILIAILLPPLGVCLKHGCCTVEFCICLLLTILGYVPGIIYALYAIVFVDR 60
          MPS CEI CEILIAIL+PPLGVCL+HGCCTVEFCICLLLT LGYVPGIIYALYAIVF+DR
Sbjct: 1  MPSRCEIFCEILIAILIPPLGVCLRHGCCTVEFCICLLLTFLGYVPGIIYALYAIVFIDR 60

Query: 61 DEYFDEYRRPLKVP 74
          +EYFDEYRRPL  P
Sbjct: 61 NEYFDEYRRPLYAP 74

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388495520|gb|AFK35826.1| unknown [Medicago truncatula]

 Score =  130 bits (327), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 62/71 (87%), Positives = 69/71 (97%)

Query: 1  MPSCCEICCEILIAILLPPLGVCLKHGCCTVEFCICLLLTILGYVPGIIYALYAIVFVDR 60
          MPS CEICCEI+IA+LLPPLGVCL+HGCCTVEF ICLLLTILGY+PGIIYALYAI+F+DR
Sbjct: 1  MPSRCEICCEIMIAVLLPPLGVCLRHGCCTVEFIICLLLTILGYLPGIIYALYAIIFIDR 60

Query: 61 DEYFDEYRRPL 71
          D+YFDEYRRPL
Sbjct: 61 DQYFDEYRRPL 71

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255577047|ref|XP_002529408.1| Hydrophobic protein OSR8, putative [Ricinus communis] gi|223531156|gb|EEF33004.1| Hydrophobic protein OSR8, putative [Ricinus communis]

 Score =  130 bits (326), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 65/75 (86%), Positives = 69/75 (92%)

Query: 1  MPSCCEICCEILIAILLPPLGVCLKHGCCTVEFCICLLLTILGYVPGIIYALYAIVFVDR 60
          MPS CEI CEILIAILLPPLGVCL+HGCC+VEF ICLLLTILGYVPGIIYALYAIVFV+R
Sbjct: 1  MPSKCEILCEILIAILLPPLGVCLRHGCCSVEFWICLLLTILGYVPGIIYALYAIVFVNR 60

Query: 61 DEYFDEYRRPLKVPY 75
          DE+FDEYRRPL   Y
Sbjct: 61 DEFFDEYRRPLYAAY 75

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388503944|gb|AFK40038.1| unknown [Medicago truncatula]

 Score =  129 bits (324), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 61/71 (85%), Positives = 68/71 (95%)

Query: 1  MPSCCEICCEILIAILLPPLGVCLKHGCCTVEFCICLLLTILGYVPGIIYALYAIVFVDR 60
          MPS CEICCEI+IA+LLPPLGVC +HGCCTVEF ICLLLTILGY+PGIIYALYAI+F+DR
Sbjct: 1  MPSRCEICCEIMIAVLLPPLGVCFRHGCCTVEFIICLLLTILGYLPGIIYALYAIIFIDR 60

Query: 61 DEYFDEYRRPL 71
          D+YFDEYRRPL
Sbjct: 61 DQYFDEYRRPL 71

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356500671|ref|XP_003519155.1| PREDICTED: UPF0057 membrane protein At4g30660 [Glycine max] gi|255628505|gb|ACU14597.1| unknown [Glycine max]

 Score =  128 bits (322), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 61/75 (81%), Positives = 69/75 (92%)

Query: 1  MPSCCEICCEILIAILLPPLGVCLKHGCCTVEFCICLLLTILGYVPGIIYALYAIVFVDR 60
          MP+ CEICCEI+IAIL+PPLGVC +HGCC+VEF ICLLLTILGY+PGIIYALYAI+FVDR
Sbjct: 1  MPTRCEICCEIMIAILIPPLGVCFRHGCCSVEFIICLLLTILGYIPGIIYALYAIIFVDR 60

Query: 61 DEYFDEYRRPLKVPY 75
          D+YFDEYRRPL   Y
Sbjct: 61 DQYFDEYRRPLYAQY 75

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388498092|gb|AFK37112.1| unknown [Lotus japonicus] gi|388505686|gb|AFK40909.1| unknown [Lotus japonicus]

 Score =  127 bits (320), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 61/74 (82%), Positives = 68/74 (91%)

Query: 1  MPSCCEICCEILIAILLPPLGVCLKHGCCTVEFCICLLLTILGYVPGIIYALYAIVFVDR 60
          MPS C ICCE+LIA+LLPPLGVCL+HGCCTVEF ICLLLTILGY+PGIIYALYAI+F+DR
Sbjct: 1  MPSRCAICCELLIAVLLPPLGVCLRHGCCTVEFIICLLLTILGYIPGIIYALYAIIFIDR 60

Query: 61 DEYFDEYRRPLKVP 74
          D+YFDE RRPL  P
Sbjct: 61 DQYFDESRRPLYAP 74

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	94
TAIR|locus:1006230338	77	AT4G28088 "AT4G28088" [Arabido	0.542	0.662	0.843	1.5e-21
TAIR|locus:2061501	75	AT2G24040 [Arabidopsis thalian	0.542	0.68	0.803	2.7e-20
TAIR|locus:2131964	74	AT4G30660 "AT4G30660" [Arabido	0.542	0.689	0.784	4e-19
TAIR|locus:2118741	73	AT4G30650 "AT4G30650" [Arabido	0.436	0.561	0.804	1.8e-14
TAIR|locus:505006307	54	AT2G38905 "AT2G38905" [Arabido	0.372	0.648	0.722	4.7e-09
TAIR|locus:2074509	54	RCI2A "AT3G05880" [Arabidopsis	0.361	0.629	0.657	8.7e-08
TAIR|locus:2074419	54	RCI2B "RARE-COLD-INDUCIBLE 2B"	0.361	0.629	0.685	8.7e-08
WB|WBGene00020737	57	T23F2.4 [Caenorhabditis elegan	0.372	0.614	0.638	6.1e-07
UNIPROTKB|Q8H5T6	56	LTI6A "Hydrophobic protein LTI	0.361	0.607	0.628	1.3e-06
WB|WBGene00020736	57	T23F2.3 [Caenorhabditis elegan	0.372	0.614	0.611	1.3e-06

TAIR|locus:1006230338 AT4G28088 "AT4G28088" [Arabidopsis thaliana (taxid:3702)]

 Score = 252 (93.8 bits), Expect = 1.5e-21, P = 1.5e-21
 Identities = 43/51 (84%), Positives = 49/51 (96%)

Query:    21 GVCLKHGCCTVEFCICLLLTILGYVPGIIYALYAIVFVDRDEYFDEYRRPL 71
             GVCL+HGCCT EF ICL+LT+LGYVPGIIYALYAIV+VDRD++FDEYRRPL
Sbjct:    21 GVCLRHGCCTTEFMICLILTLLGYVPGIIYALYAIVYVDRDQFFDEYRRPL 71

GO:0008150 "biological_process" evidence=ND

GO:0016021 "integral to membrane" evidence=IEA

TAIR|locus:2061501 AT2G24040 [Arabidopsis thaliana (taxid:3702)]

 Score = 240 (89.5 bits), Expect = 2.7e-20, P = 2.7e-20
 Identities = 41/51 (80%), Positives = 47/51 (92%)

Query:    21 GVCLKHGCCTVEFCICLLLTILGYVPGIIYALYAIVFVDRDEYFDEYRRPL 71
             GVCL+HGCCTVEF ICL+LT LGY+PGIIYA+YAI F+ RDEYFDEYRRP+
Sbjct:    21 GVCLRHGCCTVEFFICLILTCLGYLPGIIYAIYAICFLHRDEYFDEYRRPI 71

GO:0005576 "extracellular region" evidence=ISM

GO:0009409 "response to cold" evidence=ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0042538 "hyperosmotic salinity response" evidence=ISS

TAIR|locus:2131964 AT4G30660 "AT4G30660" [Arabidopsis thaliana (taxid:3702)]

 Score = 229 (85.7 bits), Expect = 4.0e-19, P = 4.0e-19
 Identities = 40/51 (78%), Positives = 45/51 (88%)

Query:    21 GVCLKHGCCTVEFCICLLLTILGYVPGIIYALYAIVFVDRDEYFDEYRRPL 71
             GVC + GCCTVEF ICL+LTILGYVPGIIYA+Y IVF  R+EYFDEYRRP+
Sbjct:    21 GVCFRKGCCTVEFLICLVLTILGYVPGIIYAIYVIVFQHREEYFDEYRRPI 71

GO:0009409 "response to cold" evidence=ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0042538 "hyperosmotic salinity response" evidence=ISS

GO:0006333 "chromatin assembly or disassembly" evidence=RCA

GO:0042631 "cellular response to water deprivation" evidence=RCA

TAIR|locus:2118741 AT4G30650 "AT4G30650" [Arabidopsis thaliana (taxid:3702)]

 Score = 185 (70.2 bits), Expect = 1.8e-14, P = 1.8e-14
 Identities = 33/41 (80%), Positives = 37/41 (90%)

Query:    21 GVCLKHGCCTVEFCICLLLTILGYVPGIIYALYAIVFVDRD 61
             GVCLK GCCTVEF ICL+LTILGY+PGIIYALY IVF +R+
Sbjct:    21 GVCLKRGCCTVEFLICLVLTILGYIPGIIYALYVIVFQNRE 61

GO:0009409 "response to cold" evidence=ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0042538 "hyperosmotic salinity response" evidence=ISS

GO:0050832 "defense response to fungus" evidence=IEP

TAIR|locus:505006307 AT2G38905 "AT2G38905" [Arabidopsis thaliana (taxid:3702)]

 Score = 134 (52.2 bits), Expect = 4.7e-09, P = 4.7e-09
 Identities = 26/36 (72%), Positives = 31/36 (86%)

Query:    21 GVCLKHGCCTVEFCICLLLTILGYVPGIIYALYAIV 56
             GV L++GC  VEF ICLLLTILGY+PGIIYA+Y +V
Sbjct:    19 GVFLRYGC-GVEFWICLLLTILGYIPGIIYAIYVLV 53

GO:0009409 "response to cold" evidence=ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0042538 "hyperosmotic salinity response" evidence=ISS

TAIR|locus:2074509 RCI2A "AT3G05880" [Arabidopsis thaliana (taxid:3702)]

 Score = 122 (48.0 bits), Expect = 8.7e-08, P = 8.7e-08
 Identities = 23/35 (65%), Positives = 29/35 (82%)

Query:    21 GVCLKHGCCTVEFCICLLLTILGYVPGIIYALYAI 55
             GV L+ GC  VEF ICL+LT+LGY+PGIIYA+Y +
Sbjct:    19 GVFLRFGC-GVEFWICLVLTLLGYIPGIIYAIYVL 52

GO:0003674 "molecular_function" evidence=ND

GO:0016021 "integral to membrane" evidence=IEA;ISS

GO:0042538 "hyperosmotic salinity response" evidence=IGI;TAS

GO:0009737 "response to abscisic acid stimulus" evidence=TAS

GO:0006096 "glycolysis" evidence=RCA

GO:0006833 "water transport" evidence=RCA

GO:0006972 "hyperosmotic response" evidence=RCA

GO:0007030 "Golgi organization" evidence=RCA

GO:0009266 "response to temperature stimulus" evidence=RCA

GO:0009651 "response to salt stress" evidence=RCA

GO:0046686 "response to cadmium ion" evidence=RCA

GO:0009409 "response to cold" evidence=TAS

TAIR|locus:2074419 RCI2B "RARE-COLD-INDUCIBLE 2B" [Arabidopsis thaliana (taxid:3702)]

 Score = 122 (48.0 bits), Expect = 8.7e-08, P = 8.7e-08
 Identities = 24/35 (68%), Positives = 28/35 (80%)

Query:    21 GVCLKHGCCTVEFCICLLLTILGYVPGIIYALYAI 55
             GV LK GC  VEF ICL+LT+ GY+PGI+YALY I
Sbjct:    19 GVFLKFGC-KVEFWICLILTLFGYLPGILYALYII 52

GO:0016021 "integral to membrane" evidence=IEA;ISS

GO:0009409 "response to cold" evidence=IMP

WB|WBGene00020737 T23F2.4 [Caenorhabditis elegans (taxid:6239)]

 Score = 114 (45.2 bits), Expect = 6.1e-07, P = 6.1e-07
 Identities = 23/36 (63%), Positives = 27/36 (75%)

Query:    21 GVCLKHGCCTVEFCICLLLTILGYVPGIIYALYAIV 56
             GV L+ GC T    IC+LLTILGY+PGIIYA Y I+
Sbjct:    21 GVFLEKGC-THHLAICILLTILGYIPGIIYACYIIL 55

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|Q8H5T6 LTI6A "Hydrophobic protein LTI6A" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 111 (44.1 bits), Expect = 1.3e-06, P = 1.3e-06
 Identities = 22/35 (62%), Positives = 26/35 (74%)

Query:    21 GVCLKHGCCTVEFCICLLLTILGYVPGIIYALYAI 55
             GV  K GC  +EF ICLLLT  GY+PGIIYA++ I
Sbjct:    21 GVFFKFGC-GIEFWICLLLTFFGYLPGIIYAVWVI 54

GO:0005886 "plasma membrane" evidence=ISS

GO:0009409 "response to cold" evidence=IEP

GO:0009414 "response to water deprivation" evidence=IEP

GO:0009651 "response to salt stress" evidence=IEP

GO:0009737 "response to abscisic acid stimulus" evidence=IEP

WB|WBGene00020736 T23F2.3 [Caenorhabditis elegans (taxid:6239)]

 Score = 111 (44.1 bits), Expect = 1.3e-06, P = 1.3e-06
 Identities = 22/36 (61%), Positives = 26/36 (72%)

Query:    21 GVCLKHGCCTVEFCICLLLTILGYVPGIIYALYAIV 56
             GV L+ GC      IC+LLTILGY+PGIIYA Y I+
Sbjct:    21 GVFLEKGC-DYHLAICILLTILGYIPGIIYACYVIL 55

GO:0016021 "integral to membrane" evidence=IEA

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Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9LRI7	OSR8_ORYSJ	No assigned EC number	0.7241	0.6170	0.8055	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: gw1.VI.330.1 SubName- Full=Putative uncharacterized protein; (73 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	94
pfam01679	51	pfam01679, Pmp3, Proteolipid membrane potential mo	6e-15
COG0401	56	COG0401, COG0401, Uncharacterized homolog of Blt10	1e-11

>gnl|CDD|201919 pfam01679, Pmp3, Proteolipid membrane potential modulator

 Score = 62.4 bits (153), Expect = 6e-15
 Identities = 28/50 (56%), Positives = 36/50 (72%), Gaps = 1/50 (2%)

Query: 8  CCEILIAILLPPLGVCLKHGCCTVEFCICLLLTILGYVPGIIYALYAIVF 57
             I++AI LPPL V LK GC   +F I +LLT+LGY+PGII+ALY I+ 
Sbjct: 3  ILLIILAIFLPPLAVFLKRGC-GKDFLINILLTLLGYIPGIIHALYIILK 51

Pmp3 is an evolutionarily conserved proteolipid in the plasma membrane which, in S. pombe, is transcriptionally regulated by the Spc1 stress MAPK (mitogen-activated protein kinases) pathway. It functions to modulate the membrane potential, particularly to resist high cellular cation concentration. In eukaryotic organisms, stress-activated mitogen-activated protein kinases play crucial roles in transmitting environmental signals that will regulate gene expression for allowing the cell to adapt to cellular stress. Pmp3-like proteins are highly conserved in bacteria, yeast, nematode and plants. Length = 51

>gnl|CDD|223478 COG0401, COG0401, Uncharacterized homolog of Blt101 [Function unknown]

 Score = 54.2 bits (131), Expect = 1e-11
 Identities = 27/45 (60%), Positives = 35/45 (77%)

Query: 11 ILIAILLPPLGVCLKHGCCTVEFCICLLLTILGYVPGIIYALYAI 55
          I++AI LPPLGV L+ G    +F I +LLT+LGY+PGII+ALY I
Sbjct: 9  IVLAIFLPPLGVFLRRGFGGKDFLINILLTLLGYIPGIIHALYVI 53

Length = 56

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	94
KOG1773	63	consensus Stress responsive protein [General funct	99.94
COG0401	56	Uncharacterized homolog of Blt101 [Function unknow	99.91
PF01679	51	Pmp3: Proteolipid membrane potential modulator; In	99.87
PF14373	43	Imm_superinfect: Superinfection immunity protein	86.47

>KOG1773 consensus Stress responsive protein [General function prediction only]

Probab=99.94  E-value=4.8e-27  Score=150.96  Aligned_cols=61  Identities=49%  Similarity=0.921  Sum_probs=59.7

Q ss_pred             CCcchHHHHHHHHHhccchheeehhhcCCChhHHHHHHHHHHHhhhhhhhhheeEEeeCcc
Q 034461            1 MPSCCEICCEILIAILLPPLGVCLKHGCCTVEFCICLLLTILGYVPGIIYALYAIVFVDRD   61 (94)
Q Consensus         1 M~~~~~~ill~ILai~lPPlaV~l~~G~~~~~~~InllLtllg~iPGiIhA~yvi~~~~~~   61 (94)
                      |++++++++++++|+++||+||++++|+|++|++||++||++||+||+|||+|++.+++|+
T Consensus         1 m~~~~~~~~~iilai~lPP~aV~l~~g~C~~~~~InilL~~L~~iPgiIhA~yii~~~~r~   61 (63)
T KOG1773|consen    1 MATDCDDILLIILAIFLPPLAVFLRRGGCTVDVLINILLTLLGFIPGIIHAIYIIFFRGRE   61 (63)
T ss_pred             CCCcHHHHHHHHHHHHcCchheeeecCCCchhhHHHHHHHHHHHhHHHHhhEEEEEEecCC
Confidence            8899999999999999999999999999999999999999999999999999999999987

>COG0401 Uncharacterized homolog of Blt101 [Function unknown]

Probab=99.91  E-value=5e-25  Score=138.76  Aligned_cols=55  Identities=49%  Similarity=0.790  Sum_probs=52.4

Q ss_pred             chHHHHHHHHHhccchheeehhhcCCChhHHHHHHHHHHHhhhhhhhhheeEEee
Q 034461            4 CCEICCEILIAILLPPLGVCLKHGCCTVEFCICLLLTILGYVPGIIYALYAIVFV   58 (94)
Q Consensus         4 ~~~~ill~ILai~lPPlaV~l~~G~~~~~~~InllLtllg~iPGiIhA~yvi~~~   58 (94)
                      +..|++++++|+|+||+||++++|.|++|+++|++||++||+||+|||+|++.++
T Consensus         2 ~~~d~~~iilaiflPP~~VfL~~G~~~~df~iNiLLtlLg~~PGiiHA~yvi~~~   56 (56)
T COG0401           2 TLMDFIRIVLAIFLPPLGVFLRRGFGGKDFLINILLTLLGYIPGIIHALYVILRD   56 (56)
T ss_pred             cHHHHHHHHHHHHcCchhhhhhccCCcHHHHHHHHHHHHHhhhhhHhheEEEEeC
Confidence            4789999999999999999999999999999999999999999999999999864

>PF01679 Pmp3: Proteolipid membrane potential modulator; InterPro: IPR000612 Proteolipid membrane potential modulator is an evolutionarily conserved proteolipid in the plasma membrane which, in S

Probab=99.87  E-value=8.7e-23  Score=125.96  Aligned_cols=50  Identities=54%  Similarity=0.931  Sum_probs=48.1

Q ss_pred             HHHHHHHHhccchheeehhhcCCChhHHHHHHHHHHHhhhhhhhhheeEEe
Q 034461            7 ICCEILIAILLPPLGVCLKHGCCTVEFCICLLLTILGYVPGIIYALYAIVF   57 (94)
Q Consensus         7 ~ill~ILai~lPPlaV~l~~G~~~~~~~InllLtllg~iPGiIhA~yvi~~   57 (94)
                      |++++++|+++||+||++++| |++|+++|++||++||+||++||+|++++
T Consensus         2 ~~~~~ilai~lPPlaV~~~~g-~~~~~~inl~Ltl~g~iPg~ihA~y~i~~   51 (51)
T PF01679_consen    2 DILLIILAIFLPPLAVFLKKG-CSKDFWINLLLTLLGWIPGVIHALYVIYK   51 (51)
T ss_pred             cHHHHHHHHHcccHHHHHHcC-CchhhHHHHHHHHHHHHHHHHHeeEEEeC
Confidence            689999999999999999999 99999999999999999999999999864

pombe, is transcriptionally regulated by the Spc1 stress MAPK (mitogen-activated protein kinases) pathway. It functions to modulate the membrane potential, particularly to resist high cellular cation concentration. In eukaryotic organisms, stress-activated mitogen-activated protein kinases play crucial roles in transmitting environmental signals that will regulate gene expression for allowing the cell to adapt to cellular stress. Pmp3-like proteins are highly conserved in bacteria, yeast, nematode and plants. Proteins in this entry include the PMP3 as well as several other proteins that have been shown [] to be evolutionary related. These are small proteins of from 52 to 140 amino-acid resiudes that contain two transmembrane domains and belong to the UPF0057 (PMP3) protein family.; GO: 0016021 integral to membrane

>PF14373 Imm_superinfect: Superinfection immunity protein

Probab=86.47  E-value=0.71  Score=27.63  Aligned_cols=23  Identities=43%  Similarity=0.658  Sum_probs=19.7

Q ss_pred             ChhHHHHHHH--HHHHhhhhhhhhh
Q 034461           30 TVEFCICLLL--TILGYVPGIIYAL   52 (94)
Q Consensus        30 ~~~~~InllL--tllg~iPGiIhA~   52 (94)
                      ..=+++|++|  |++||+-+.++|+
T Consensus        18 ~~I~~~Nl~lGWT~iGWv~aLiwA~   42 (43)
T PF14373_consen   18 WAIFLLNLLLGWTGIGWVAALIWAL   42 (43)
T ss_pred             hhhHhHHHHHHhHHHHHHHHHHHhc
Confidence            3457889999  9999999999886

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00