Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
ID Alignment Graph Length
Definition
E-value Query 93
PLN02487 569
PLN02487, PLN02487, zeta-carotene desaturase
1e-39 TIGR02732 474
TIGR02732, zeta_caro_desat, 9,9'-di-cis-zeta-carot
6e-34 COG3349 485
COG3349, COG3349, Uncharacterized conserved protei
3e-11 TIGR02731 453
TIGR02731, phytoene_desat, phytoene desaturase
5e-11 TIGR03467 411
TIGR03467, HpnE, squalene-associated FAD-dependent
5e-07 PLN02612 567
PLN02612, PLN02612, phytoene desaturase
1e-06 pfam01593 444
pfam01593, Amino_oxidase, Flavin containing amine
0.001
>gnl|CDD|215268 PLN02487, PLN02487, zeta-carotene desaturase
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Score = 137 bits (346), Expect = 1e-39
Identities = 53/70 (75%), Positives = 58/70 (82%)
Query: 1 MPLPNDEIIRRVAKQVLALFPSSQGLEVIWSSFVKIGQSLCGEGPGKDPFRRDQKTPVKN 60
MPL ND+I+ +V KQVL LFPSS+GLEV WSS VKIGQSL E PG DPFR DQKTP+ N
Sbjct: 460 MPLSNDKIVEKVHKQVLELFPSSRGLEVTWSSVVKIGQSLYREAPGMDPFRPDQKTPISN 519
Query: 61 FFLAGSYTKQ 70
FFLAGSYTKQ
Sbjct: 520 FFLAGSYTKQ 529
>gnl|CDD|131779 TIGR02732, zeta_caro_desat, 9,9'-di-cis-zeta-carotene desaturase
Back Show alignment and domain information
Score = 120 bits (303), Expect = 6e-34
Identities = 47/70 (67%), Positives = 55/70 (78%)
Query: 1 MPLPNDEIIRRVAKQVLALFPSSQGLEVIWSSFVKIGQSLCGEGPGKDPFRRDQKTPVKN 60
MP N+EI +RV KQV ALFPSS+ L++ WSS VK+ QSL E PG DPFR DQKTP+ N
Sbjct: 384 MPESNEEIAKRVDKQVRALFPSSKNLKLTWSSVVKLAQSLYREAPGMDPFRPDQKTPISN 443
Query: 61 FFLAGSYTKQ 70
FFLAGSYT+Q
Sbjct: 444 FFLAGSYTQQ 453
Carotene 7,8-desaturase, also called zeta-carotene desaturase, catalyzes multiple steps in the pathway from geranylgeranyl-PP to all-trans-lycopene in plants and cyanobacteria. A similar enzyme and pathway is found in the green sulfur bacterium Chlorobium tepidum. Length = 474
>gnl|CDD|225885 COG3349, COG3349, Uncharacterized conserved protein [Function unknown]
Back Show alignment and domain information
Score = 57.4 bits (139), Expect = 3e-11
Identities = 26/66 (39%), Positives = 36/66 (54%), Gaps = 1/66 (1%)
Query: 5 NDEIIRRVAKQVLALFPSSQGLEVIWSSFVKIGQSLCGEGPGKDPFRRDQKTPVKNFFLA 64
++ I+ K++ L PS + SS + QSL G PG +R +QKTP+ N LA
Sbjct: 375 DEAIVATFEKELYELVPS-LAEAKLKSSVLVNQQSLYGLAPGSYHYRPEQKTPIPNLLLA 433
Query: 65 GSYTKQ 70
G YTKQ
Sbjct: 434 GDYTKQ 439
>gnl|CDD|131778 TIGR02731, phytoene_desat, phytoene desaturase
Back Show alignment and domain information
Score = 56.8 bits (137), Expect = 5e-11
Identities = 26/71 (36%), Positives = 39/71 (54%), Gaps = 4/71 (5%)
Query: 4 PNDEIIRRVAKQVLALFPSSQGLE----VIWSSFVKIGQSLCGEGPGKDPFRRDQKTPVK 59
++EII ++ LFP+ + ++ VK +S+ PG+ +R QKTP+
Sbjct: 362 SDEEIIDATMAELAKLFPNHIKADSPAKILKYKVVKTPRSVYKTTPGRQQYRPHQKTPIP 421
Query: 60 NFFLAGSYTKQ 70
NFFLAG YTKQ
Sbjct: 422 NFFLAGDYTKQ 432
Plants and cyanobacteria (and, supposedly, Chlorobium tepidum) have a conserved pathway from two molecules geranylgeranyl-PP to one of all-trans-lycopene. Members of this family are the enzyme pytoene desaturase (also called phytoene dehydrogenase). This model does not include the region of the chloroplast transit peptide in plants. A closely related family, excluded by this model, is zeta-carotene desaturase, another enzyme in the same pathway [Biosynthesis of cofactors, prosthetic groups, and carriers, Other]. Length = 453
>gnl|CDD|234221 TIGR03467, HpnE, squalene-associated FAD-dependent desaturase
Back Show alignment and domain information
Score = 45.4 bits (108), Expect = 5e-07
Identities = 20/67 (29%), Positives = 34/67 (50%)
Query: 2 PLPNDEIIRRVAKQVLALFPSSQGLEVIWSSFVKIGQSLCGEGPGKDPFRRDQKTPVKNF 61
LP +E+ R+ ++ FP G + +W+ +K ++ PG + R +TP N
Sbjct: 321 DLPREELADRIVAELRRAFPRVAGAKPLWARVIKEKRATFAATPGLNRLRPGARTPWPNL 380
Query: 62 FLAGSYT 68
FLAG +T
Sbjct: 381 FLAGDWT 387
The sequences in this family are members of the pfam01593 superfamily of flavin-containing amine oxidases which include the phytoene desaturases. These sequences also include a FAD-dependent oxidoreductase domain, pfam01266. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of squalene, the condensation product of the polyisoprenoid farnesyl pyrophosphate. This gene and its association with hopene biosynthesis in Zymomonas mobilis has been noted in the literature where the gene symbol hpnE was assigned. This gene is also found in contexts where the downstream conversion of squalene to hopenes is not evidence. The precise nature of the reaction catalyzed by this enzyme is unknown at this time. Length = 411
>gnl|CDD|215330 PLN02612, PLN02612, phytoene desaturase
Back Show alignment and domain information
Score = 44.4 bits (105), Expect = 1e-06
Identities = 23/71 (32%), Positives = 40/71 (56%), Gaps = 5/71 (7%)
Query: 5 NDEIIRRVAKQVLALFP----SSQGL-EVIWSSFVKIGQSLCGEGPGKDPFRRDQKTPVK 59
+++II K++ LFP + Q +++ VK +S+ P +P R Q++P++
Sbjct: 454 DEDIIDATMKELAKLFPDEISADQSKAKILKYHVVKTPRSVYKTVPNCEPCRPLQRSPIE 513
Query: 60 NFFLAGSYTKQ 70
F+LAG YTKQ
Sbjct: 514 GFYLAGDYTKQ 524
>gnl|CDD|216593 pfam01593, Amino_oxidase, Flavin containing amine oxidoreductase
Back Show alignment and domain information
Score = 35.6 bits (82), Expect = 0.001
Identities = 15/77 (19%), Positives = 28/77 (36%), Gaps = 10/77 (12%)
Query: 3 LPNDEIIRRVAKQVLALFPSSQGLEVI------WSSFVKIGQSLCGEGPGKDP--FRRDQ 54
L ++E++ V + + L + + W + + P D +R
Sbjct: 348 LSDEELLEAVLRDLRKLLGPEDVPDPVNFLVSDWHT-DPYARGSYSYPPVGDDSRYRPAL 406
Query: 55 KTPV-KNFFLAGSYTKQ 70
+TPV F AG +T
Sbjct: 407 RTPVGPGLFFAGEHTSG 423
This family consists of various amine oxidases, including maze polyamine oxidase (PAO) and various flavin containing monoamine oxidases (MAO). The aligned region includes the flavin binding site of these enzymes. The family also contains phytoene dehydrogenases and related enzymes. In vertebrates MAO plays an important role regulating the intracellular levels of amines via there oxidation; these include various neurotransmitters, neurotoxins and trace amines. In lower eukaryotes such as aspergillus and in bacteria the main role of amine oxidases is to provide a source of ammonium. PAOs in plants, bacteria and protozoa oxidase spermidine and spermine to an aminobutyral, diaminopropane and hydrogen peroxide and are involved in the catabolism of polyamines. Other members of this family include tryptophan 2-monooxygenase, putrescine oxidase, corticosteroid binding proteins and antibacterial glycoproteins. Length = 444
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
ID Alignment Graph Length
Definition
Probability Query
93
PLN02487 569
zeta-carotene desaturase
99.88 TIGR02732 474
zeta_caro_desat carotene 7,8-desaturase. Carotene
99.87 PLN02612 567
phytoene desaturase
99.55 TIGR02731 453
phytoene_desat phytoene desaturase. Plants and cya
99.48 TIGR03467 419
HpnE squalene-associated FAD-dependent desaturase.
99.32 COG3349 485
Uncharacterized conserved protein [Function unknow
99.14 PRK07233 434
hypothetical protein; Provisional
99.11 PF01593 450
Amino_oxidase: Flavin containing amine oxidoreduct
98.37 PLN02268 435
probable polyamine oxidase
98.07 PRK07208 479
hypothetical protein; Provisional
98.02 PRK11883 451
protoporphyrinogen oxidase; Reviewed
97.9 TIGR00562 462
proto_IX_ox protoporphyrinogen oxidase. This prote
97.89 PLN02576 496
protoporphyrinogen oxidase
97.75 PLN02529 738
lysine-specific histone demethylase 1
97.59 TIGR02733 492
desat_CrtD C-3',4' desaturase CrtD. Members of thi
97.45 KOG0029 501
consensus Amine oxidase [Secondary metabolites bio
97.44 TIGR02730 493
carot_isom carotene isomerase. Members of this fam
97.33 PRK12416 463
protoporphyrinogen oxidase; Provisional
97.31 PLN03000 881
amine oxidase
97.27 TIGR02734 502
crtI_fam phytoene desaturase. Phytoene is converte
97.23 PLN02976 1713
amine oxidase
97.22 PLN02328 808
lysine-specific histone demethylase 1 homolog
97.13 PLN02676 487
polyamine oxidase
97.08 PLN02568 539
polyamine oxidase
96.25 KOG4254 561
consensus Phytoene desaturase [Coenzyme transport
95.5 COG1232 444
HemY Protoporphyrinogen oxidase [Coenzyme metaboli
95.37 COG1233 487
Phytoene dehydrogenase and related proteins [Secon
94.65 COG3380 331
Predicted NAD/FAD-dependent oxidoreductase [Genera
86.07 COG1231 450
Monoamine oxidase [Amino acid transport and metabo
84.93
>PLN02487 zeta-carotene desaturase
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Probab=99.88 E-value=7.7e-23 Score=165.62 Aligned_cols=81 Identities=65% Similarity=0.958 Sum_probs=77.2
Q ss_pred CCCCHHHHHHHHHHHHHHHCCCCCCCceeeEEEEEeCCceecCCCCCCCCCCCCCCCCCCEEEecCccccCcccceeccc
Q 034492 1 MPLPNDEIIRRVAKQVLALFPSSQGLEVIWSSFVKIGQSLCGEGPGKDPFRRDQKTPVKNFFLAGSYTKQIVWKEQLCLV 80 (93)
Q Consensus 1 ~~~~deel~~~v~~eL~~~~P~~~~a~v~~~~Vire~~Atf~~~PG~~~~RP~~~T~~~nLfLAGDwt~t~~pAt~~~~~ 80 (93)
+.+++|||+++++++|+++||.+..+.+++++|+|+++|+|.+.||++..||.++|+++|||||||||+|+||+|||++|
T Consensus 460 ~~~~~~ei~~~~~~~L~~~~p~~~~~~v~~~~vv~~~~at~~~~pg~~~~RP~~~T~~~nl~LAGD~t~~~yPat~EgAv 539 (569)
T PLN02487 460 MPLSNDKIVEKVHKQVLELFPSSRGLEVTWSSVVKIGQSLYREAPGMDPFRPDQKTPISNFFLAGSYTKQDYIDSMEGAT 539 (569)
T ss_pred cCCCHHHHHHHHHHHHHHhCcccccCceEEEEEEEccCceeccCCCccccCCCCCCCCCCEEEeCcccccCCcchHHHHH
Confidence 46899999999999999999998778899999999999999999999999999999999999999999999999999987
Q ss_pred c
Q 034492 81 D 81 (93)
Q Consensus 81 ~ 81 (93)
-
T Consensus 540 ~ 540 (569)
T PLN02487 540 L 540 (569)
T ss_pred H
Confidence 4
>TIGR02732 zeta_caro_desat carotene 7,8-desaturase
Back Show alignment and domain information
Probab=99.87 E-value=2e-22 Score=159.00 Aligned_cols=81 Identities=58% Similarity=0.841 Sum_probs=77.0
Q ss_pred CCCCHHHHHHHHHHHHHHHCCCCCCCceeeEEEEEeCCceecCCCCCCCCCCCCCCCCCCEEEecCccccCcccceeccc
Q 034492 1 MPLPNDEIIRRVAKQVLALFPSSQGLEVIWSSFVKIGQSLCGEGPGKDPFRRDQKTPVKNFFLAGSYTKQIVWKEQLCLV 80 (93)
Q Consensus 1 ~~~~deel~~~v~~eL~~~~P~~~~a~v~~~~Vire~~Atf~~~PG~~~~RP~~~T~~~nLfLAGDwt~t~~pAt~~~~~ 80 (93)
+++++|||+++++++|+++||.+..+++++++|+|+++|+|.+.||++.+||.++|+++|||||||||+|+||+||+++|
T Consensus 384 ~~~~~~~l~~~~~~~L~~~~p~~~~~~~~~~~v~~~~~a~~~~~pg~~~~~P~~~t~~~~l~lAGD~t~~~~pas~egAv 463 (474)
T TIGR02732 384 MPESNEEIAKRVDKQVRALFPSSKNLKLTWSSVVKLAQSLYREAPGMDPFRPDQKTPISNFFLAGSYTQQDYIDSMEGAT 463 (474)
T ss_pred cCCCHHHHHHHHHHHHHHhCccccCCceeEEEEEEecCceeccCCCCcccCCCCCCCCCCeEEeccccccCchHHHhHHH
Confidence 36899999999999999999987778899999999999999999999999999999999999999999999999999987
Q ss_pred c
Q 034492 81 D 81 (93)
Q Consensus 81 ~ 81 (93)
.
T Consensus 464 ~ 464 (474)
T TIGR02732 464 L 464 (474)
T ss_pred H
Confidence 4
Carotene 7,8-desaturase, also called zeta-carotene desaturase, catalyzes multiple steps in the pathway from geranylgeranyl-PP to all-trans-lycopene in plants and cyanobacteria. A similar enzyme and pathway is found in the green sulfur bacterium Chlorobium tepidum.
>PLN02612 phytoene desaturase
Back Show alignment and domain information
Probab=99.55 E-value=1e-14 Score=117.69 Aligned_cols=80 Identities=29% Similarity=0.431 Sum_probs=73.3
Q ss_pred CCCHHHHHHHHHHHHHHHCCCCC-----CCceeeEEEEEeCCceecCCCCCCCCCCCCCCCCCCEEEecCccccCcccce
Q 034492 2 PLPNDEIIRRVAKQVLALFPSSQ-----GLEVIWSSFVKIGQSLCGEGPGKDPFRRDQKTPVKNFFLAGSYTKQIVWKEQ 76 (93)
Q Consensus 2 ~~~deel~~~v~~eL~~~~P~~~-----~a~v~~~~Vire~~Atf~~~PG~~~~RP~~~T~~~nLfLAGDwt~t~~pAt~ 76 (93)
.+++|||++.++++|.++||... .++++.+++++.+++++...||....||.++||++|||||||||.++||++|
T Consensus 451 ~~sdeei~e~vl~~L~~lfp~~~~~~~~~~~i~~~~~v~~P~a~~~~~pg~~~~rp~~~tPi~~l~lAGd~t~~~~~~sm 530 (567)
T PLN02612 451 SRSDEDIIDATMKELAKLFPDEISADQSKAKILKYHVVKTPRSVYKTVPNCEPCRPLQRSPIEGFYLAGDYTKQKYLASM 530 (567)
T ss_pred cCCHHHHHHHHHHHHHHHCCcccccccCCceEEEEEEeccCCceEEeCCCCcccCccccCccCCEEEeecceeCCchhhH
Confidence 57999999999999999999652 3678888999999999999999999999999999999999999999999999
Q ss_pred ecccc
Q 034492 77 LCLVD 81 (93)
Q Consensus 77 ~~~~~ 81 (93)
++++-
T Consensus 531 eGAv~ 535 (567)
T PLN02612 531 EGAVL 535 (567)
T ss_pred HHHHH
Confidence 99874
>TIGR02731 phytoene_desat phytoene desaturase
Back Show alignment and domain information
Probab=99.48 E-value=9.1e-14 Score=107.85 Aligned_cols=80 Identities=34% Similarity=0.500 Sum_probs=72.0
Q ss_pred CCCHHHHHHHHHHHHHHHCCCC----CCCceeeEEEEEeCCceecCCCCCCCCCCCCCCCCCCEEEecCccccCccccee
Q 034492 2 PLPNDEIIRRVAKQVLALFPSS----QGLEVIWSSFVKIGQSLCGEGPGKDPFRRDQKTPVKNFFLAGSYTKQIVWKEQL 77 (93)
Q Consensus 2 ~~~deel~~~v~~eL~~~~P~~----~~a~v~~~~Vire~~Atf~~~PG~~~~RP~~~T~~~nLfLAGDwt~t~~pAt~~ 77 (93)
.+++||++++++++|.++||.. ....+++.+++++++++|.+.||....+|..++|++|||+||||++++||++|+
T Consensus 360 ~~~~ee~~~~v~~~L~~~~~~~~~~~~~~~~~~~~~~~~p~a~~~~~pg~~~~~~~~~~p~~~l~~AG~~~a~~~~g~~e 439 (453)
T TIGR02731 360 GRSDEEIIDATMAELAKLFPNHIKADSPAKILKYKVVKTPRSVYKTTPGRQQYRPHQKTPIPNFFLAGDYTKQKYLASME 439 (453)
T ss_pred cCCHHHHHHHHHHHHHHhCCcccCCCCCceEEEEEEEECCCceeccCCCChhhCccccCccCCEEEeehhccCcccccHH
Confidence 5799999999999999999852 244578889999999999999998888999999999999999999999999999
Q ss_pred cccc
Q 034492 78 CLVD 81 (93)
Q Consensus 78 ~~~~ 81 (93)
+++.
T Consensus 440 gAi~ 443 (453)
T TIGR02731 440 GAVL 443 (453)
T ss_pred HHHH
Confidence 9874
Plants and cyanobacteria (and, supposedly, Chlorobium tepidum) have a conserved pathway from two molecules geranylgeranyl-PP to one of all-trans-lycopene. Members of this family are the enzyme pytoene desaturase (also called phytoene dehydrogenase). This model does not include the region of the chloroplast transit peptide in plants. A closely related family, excluded by this model, is zeta-carotene desaturase, another enzyme in the same pathway.
>TIGR03467 HpnE squalene-associated FAD-dependent desaturase
Back Show alignment and domain information
Probab=99.32 E-value=4.2e-12 Score=95.74 Aligned_cols=80 Identities=26% Similarity=0.456 Sum_probs=71.6
Q ss_pred CCCHHHHHHHHHHHHHHHCCCCCCCceeeEEEEEeCCceecCCCCCCCCCCCCCCCCCCEEEecCccccCcccceecccc
Q 034492 2 PLPNDEIIRRVAKQVLALFPSSQGLEVIWSSFVKIGQSLCGEGPGKDPFRRDQKTPVKNFFLAGSYTKQIVWKEQLCLVD 81 (93)
Q Consensus 2 ~~~deel~~~v~~eL~~~~P~~~~a~v~~~~Vire~~Atf~~~PG~~~~RP~~~T~~~nLfLAGDwt~t~~pAt~~~~~~ 81 (93)
.+++|++++.++++|.++||......+.+.++.+.+++.+...||....+|...++++|||+||||++++||++|++++.
T Consensus 329 ~~~~e~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~l~~aGd~~~~~~~~~~egA~~ 408 (419)
T TIGR03467 329 DLPREELADRIVAELRRAFPRVAGAKPLWARVIKEKRATFAATPGLNRLRPGARTPWPNLFLAGDWTATGWPATMEGAVR 408 (419)
T ss_pred cCCHHHHHHHHHHHHHHhcCccccCCccceEEEEccCCccccCCcccccCCCCCCCcCCEEEecccccCCCcchHHHHHH
Confidence 57899999999999999999654456778899999999999999987779988899999999999999999999998864
The sequences in this family are members of the pfam01593 superfamily of flavin-containing amine oxidases which include the phytoene desaturases. These sequences also include a FAD-dependent oxidoreductase domain, pfam01266. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of squalene, the condensation product of the polyisoprenoid farnesyl pyrophosphate. This gene and its association with hopene biosynthesis in Zymomonas mobilis has been noted in the literature where the gene symbol hpnE was assigned. This gene is also found in contexts where the downstream conversion of squalene to hopenes is not evidence. The precise nature of the reaction catalyzed by this enzyme is unknown at this time.
>COG3349 Uncharacterized conserved protein [Function unknown]
Back Show alignment and domain information
Probab=99.14 E-value=4.6e-11 Score=95.98 Aligned_cols=78 Identities=33% Similarity=0.433 Sum_probs=72.2
Q ss_pred CCCHHHHHHHHHHHHHHHCCCCCCCceeeEEEEEeCCceecCCCCCCCCCCCCCCCCCCEEEecCccccCcccceeccc
Q 034492 2 PLPNDEIIRRVAKQVLALFPSSQGLEVIWSSFVKIGQSLCGEGPGKDPFRRDQKTPVKNFFLAGSYTKQIVWKEQLCLV 80 (93)
Q Consensus 2 ~~~deel~~~v~~eL~~~~P~~~~a~v~~~~Vire~~Atf~~~PG~~~~RP~~~T~~~nLfLAGDwt~t~~pAt~~~~~ 80 (93)
..++++++..+.+++..++|....++ .+++++++.++.....||++.+||.+.|+++||++||||+.+.|-.|||.++
T Consensus 372 ~~~~~~~~a~~e~~~~~~vP~~~~a~-~~~~~i~~~q~~~~~~pgs~~~rP~~~Tpv~N~~laGd~~~~~~~~smE~A~ 449 (485)
T COG3349 372 FESDEAIVATFEKELYELVPSLAEAK-LKSSVLVNQQSLYGLAPGSYHYRPEQKTPIPNLLLAGDYTKQPYLGSMEGAT 449 (485)
T ss_pred ccchhhHHHHHHHHhhhcCCchhccc-ccccceeccccccccCCCccccCCCCCCCccchhhccceeecCCcCccchhh
Confidence 45789999999999999999766666 7889999999999999999999999999999999999999999999999875
>PRK07233 hypothetical protein; Provisional
Back Show alignment and domain information
Probab=99.11 E-value=2e-10 Score=87.25 Aligned_cols=80 Identities=16% Similarity=0.123 Sum_probs=70.7
Q ss_pred CCCHHHHHHHHHHHHHHHCCCCCCCceeeEEEEEeCCceecCCCCCCCCCCCCCCCCCCEEEecCccccCcccceecccc
Q 034492 2 PLPNDEIIRRVAKQVLALFPSSQGLEVIWSSFVKIGQSLCGEGPGKDPFRRDQKTPVKNFFLAGSYTKQIVWKEQLCLVD 81 (93)
Q Consensus 2 ~~~deel~~~v~~eL~~~~P~~~~a~v~~~~Vire~~Atf~~~PG~~~~RP~~~T~~~nLfLAGDwt~t~~pAt~~~~~~ 81 (93)
.+++++++++++++|.+++|......+++.++.|+++|.+.+.||....+|..+++++|||+|||+....++.+|++++.
T Consensus 339 ~~~~~~~~~~~~~~L~~~~p~~~~~~~~~~~~~r~~~a~~~~~~g~~~~~~~~~~~~~~l~~aG~~~~~~~~~~~~~Ai~ 418 (434)
T PRK07233 339 QMSDEELLDRFLSYLRKMFPDFDRDDVRAVRISRAPYAQPIYEPGYLDKIPPYDTPIEGLYLAGMSQIYPEDRSINGSVR 418 (434)
T ss_pred cCCHHHHHHHHHHHHHHhCCCCChhheeeEEEEEeccccccccCchhhcCCCcccCcCCEEEeCCcccCCccCchhHHHH
Confidence 46889999999999999999765567899999999999999999988889999999999999999766677889988763
>PF01593 Amino_oxidase: Flavin containing amine oxidoreductase This is a subset of the Pfam family; InterPro: IPR002937 This entry consists of various amine oxidases, including maize polyamine oxidase (PAO) [], L-amino acid oxidases (LAO) and various flavin containing monoamine oxidases (MAO)
Back Show alignment and domain information
Probab=98.37 E-value=6.3e-08 Score=71.26 Aligned_cols=80 Identities=19% Similarity=0.258 Sum_probs=55.8
Q ss_pred CCCHHHHHHHHHHHHHHHCCCCCCCceeeEEEEEeCC-----ceecCCCCCCC--CCCCCCCCC-CCEEEecCccccCcc
Q 034492 2 PLPNDEIIRRVAKQVLALFPSSQGLEVIWSSFVKIGQ-----SLCGEGPGKDP--FRRDQKTPV-KNFFLAGSYTKQIVW 73 (93)
Q Consensus 2 ~~~deel~~~v~~eL~~~~P~~~~a~v~~~~Vire~~-----Atf~~~PG~~~--~RP~~~T~~-~nLfLAGDwt~t~~p 73 (93)
.+++|++++.++++|.+++|......+.+..+.+..+ .++.+.++... .+|..++++ +|||+||||++.+|+
T Consensus 353 ~~~~e~~~~~~~~~L~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aG~~~~~~~~ 432 (450)
T PF01593_consen 353 DLSDEEILERVLDDLRKILPGASIPDPIDITVTRWSRDPYPRGSYSYFPPGQSSQFRPALRTPIDPGLYFAGDWTSPGYP 432 (450)
T ss_dssp TSCHHHHHHHHHHHHHHHHTTGGGGEESEEEEEECTTSTTTSSSCECHCTTHHHHHHHHHHSCBTTTEEE-SGGGSSSST
T ss_pred ccchhhhHHHHHHHhhhccccccccccccccccccccccccccccccccccccccccccccCCcceEEEEeecccCCCCC
Confidence 5789999999999999999952223333444444333 33333333333 577788888 799999999999999
Q ss_pred cceecccc
Q 034492 74 KEQLCLVD 81 (93)
Q Consensus 74 At~~~~~~ 81 (93)
++|++++.
T Consensus 433 ~~~~gA~~ 440 (450)
T PF01593_consen 433 GGIEGAIL 440 (450)
T ss_dssp TSHHHHHH
T ss_pred CcHHHHHH
Confidence 99987753
The aligned region includes the flavin binding site of these enzymes. In vertebrates MAO plays an important role in regulating the intracellular levels of amines via their oxidation; these include various neurotransmitters, neurotoxins and trace amines []. In lower eukaryotes such as aspergillus and in bacteria the main role of amine oxidases is to provide a source of ammonium []. PAOs in plants, bacteria and protozoa oxidise spermidine and spermine to an aminobutyral, diaminopropane and hydrogen peroxide and are involved in the catabolism of polyamines []. Other members of this family include tryptophan 2-monooxygenase, putrescine oxidase, corticosteroid binding proteins and antibacterial glycoproteins.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2Z3Y_A 2UXN_A 2Y48_A 2HKO_A 2XAF_A 2X0L_A 2XAJ_A 2UXX_A 2V1D_A 2Z5U_A ....
>PLN02268 probable polyamine oxidase
Back Show alignment and domain information
Probab=98.07 E-value=3.4e-06 Score=65.21 Aligned_cols=78 Identities=18% Similarity=0.210 Sum_probs=56.5
Q ss_pred CCCHHHHHHHHHHHHHHHCCCCCCCceeeEEEEEeCCce-----ec-CCCCC-CCCCCCCCCCCCCEEEecCccccCccc
Q 034492 2 PLPNDEIIRRVAKQVLALFPSSQGLEVIWSSFVKIGQSL-----CG-EGPGK-DPFRRDQKTPVKNFFLAGSYTKQIVWK 74 (93)
Q Consensus 2 ~~~deel~~~v~~eL~~~~P~~~~a~v~~~~Vire~~At-----f~-~~PG~-~~~RP~~~T~~~nLfLAGDwt~t~~pA 74 (93)
.++++++++.++++|.++||.. ..+....+.+....- +. +.||. ...++..+.|+.+||+||++|++.|+.
T Consensus 337 ~~~~~e~~~~v~~~L~~~~~~~--~~p~~~~~~~W~~dp~~~G~~~~~~~g~~~~~~~~l~~p~~~l~FAGe~ts~~~~g 414 (435)
T PLN02268 337 KLSDEAAANFAMSQLKKMLPDA--TEPVQYLVSRWGSDPNSLGCYSYDLVGKPHDLYERLRAPVDNLFFAGEATSSDFPG 414 (435)
T ss_pred hCCHHHHHHHHHHHHHHHcCCC--CCccEEEecccCCCCCCCccCCCCCCCCCHHHHHHHhCCCCCeEEeeccCCCcccc
Confidence 4789999999999999999853 345555555433221 11 34564 223445567788999999999999999
Q ss_pred ceecccc
Q 034492 75 EQLCLVD 81 (93)
Q Consensus 75 t~~~~~~ 81 (93)
+|++|+.
T Consensus 415 ~~eGA~~ 421 (435)
T PLN02268 415 SVHGAYS 421 (435)
T ss_pred cHHHHHH
Confidence 9999874
>PRK07208 hypothetical protein; Provisional
Back Show alignment and domain information
Probab=98.02 E-value=2.1e-06 Score=67.10 Aligned_cols=75 Identities=11% Similarity=-0.001 Sum_probs=59.8
Q ss_pred CCCHHHHHHHHHHHHHHHCCCCCCCceeeEEEEEeCCceecCCCCCCCCCCC---CCCCCCCEEEecCccccCcccceec
Q 034492 2 PLPNDEIIRRVAKQVLALFPSSQGLEVIWSSFVKIGQSLCGEGPGKDPFRRD---QKTPVKNFFLAGSYTKQIVWKEQLC 78 (93)
Q Consensus 2 ~~~deel~~~v~~eL~~~~P~~~~a~v~~~~Vire~~Atf~~~PG~~~~RP~---~~T~~~nLfLAGDwt~t~~pAt~~~ 78 (93)
.+++|||++++.++|.++.+ .....++.++|.|.+++.+.+.+|.....+. ..++.+|||+||++....| .+|+.
T Consensus 368 ~~~deel~~~~~~~L~~l~~-~~~~~~~~~~v~r~~~a~P~y~~~~~~~~~~~~~~~~~~~~l~laGr~~~~~~-~~~d~ 445 (479)
T PRK07208 368 NMSDEDLIALAIQELARLGL-IRPADVEDGFVVRVPKAYPVYDGTYERNVEIIRDLLDHFPNLHLVGRNGMHRY-NNQDH 445 (479)
T ss_pred cCCHHHHHHHHHHHHHHcCC-CChhheeEEEEEEecCcccCCCchHHHHHHHHHHHHHhcCCceeecccccccc-CChhH
Confidence 47899999999999999855 3357799999999999999999988766553 2367899999999876555 45543
>PRK11883 protoporphyrinogen oxidase; Reviewed
Back Show alignment and domain information
Probab=97.90 E-value=9.6e-06 Score=62.22 Aligned_cols=65 Identities=11% Similarity=0.144 Sum_probs=51.2
Q ss_pred CCCHHHHHHHHHHHHHHHCCCCCCCceeeEEEEEeCCceecCCCCCCCC----CCCCCCCCCCEEEecCccc
Q 034492 2 PLPNDEIIRRVAKQVLALFPSSQGLEVIWSSFVKIGQSLCGEGPGKDPF----RRDQKTPVKNFFLAGSYTK 69 (93)
Q Consensus 2 ~~~deel~~~v~~eL~~~~P~~~~a~v~~~~Vire~~Atf~~~PG~~~~----RP~~~T~~~nLfLAGDwt~ 69 (93)
.++++++++.++++|+++++.. ..+.+..+.|.+.|.+.+.||.... ++.... ++|||+||||+.
T Consensus 362 ~~~~~~~~~~~~~~L~~~~g~~--~~~~~~~~~rw~~a~p~~~~~~~~~~~~l~~~l~~-~~~l~~aG~~~~ 430 (451)
T PRK11883 362 DATDEELVAFVLADLSKVMGIT--GDPEFTIVQRWKEAMPQYGVGHIERVAELRAGLPH-YPGLYVAGASFE 430 (451)
T ss_pred cCCHHHHHHHHHHHHHHHhCCC--CCceEEEEeecCccCCCCCccHHHHHHHHHHhhhh-CCCEEEECcccC
Confidence 4679999999999999999742 3455788889999999999987543 233333 779999999986
>TIGR00562 proto_IX_ox protoporphyrinogen oxidase
Back Show alignment and domain information
Probab=97.89 E-value=1.1e-05 Score=62.53 Aligned_cols=67 Identities=16% Similarity=0.194 Sum_probs=54.5
Q ss_pred CCCHHHHHHHHHHHHHHHCCCCCCCceeeEEEEEeCCceecCCCCCCCCCCC----CCCCCCCEEEecCcccc
Q 034492 2 PLPNDEIIRRVAKQVLALFPSSQGLEVIWSSFVKIGQSLCGEGPGKDPFRRD----QKTPVKNFFLAGSYTKQ 70 (93)
Q Consensus 2 ~~~deel~~~v~~eL~~~~P~~~~a~v~~~~Vire~~Atf~~~PG~~~~RP~----~~T~~~nLfLAGDwt~t 70 (93)
+++++|+++.+.++|.++++.. ..+.+..|.|.++|.+.+.+|....++. ..+..+||++||||...
T Consensus 369 ~~~~ee~~~~v~~~L~~~~gi~--~~p~~~~v~rw~~a~P~~~~g~~~~~~~i~~~l~~~~~~l~l~G~~~~g 439 (462)
T TIGR00562 369 DLSENEIINIVLRDLKKVLNIN--NEPEMLCVTRWHRAIPQYHVGHDQRLKEARELLESAYPGVFLTGNSFEG 439 (462)
T ss_pred CCCHHHHHHHHHHHHHHHhCCC--CCCcEEEEeEccccCCCCCCChHHHHHHHHHHHHhhCCCEEEeccccCC
Confidence 5789999999999999999743 3477889999999999999997655543 23556899999999863
This protein is a flavoprotein and has a beta-alpha-beta dinucleotide binding motif near the amino end.
>PLN02576 protoporphyrinogen oxidase
Back Show alignment and domain information
Probab=97.75 E-value=1.4e-05 Score=62.77 Aligned_cols=69 Identities=12% Similarity=0.128 Sum_probs=52.0
Q ss_pred CCCHHHHHHHHHHHHHHHCCCCCCCceeeEEEEEeCCceecCCCCCCCCCCCCCC---CC--CCEEEecCcccc
Q 034492 2 PLPNDEIIRRVAKQVLALFPSSQGLEVIWSSFVKIGQSLCGEGPGKDPFRRDQKT---PV--KNFFLAGSYTKQ 70 (93)
Q Consensus 2 ~~~deel~~~v~~eL~~~~P~~~~a~v~~~~Vire~~Atf~~~PG~~~~RP~~~T---~~--~nLfLAGDwt~t 70 (93)
.+++|++++.+.++|+++++......+....+.+.+.|.+.+.+|+....+..+. .. +||++||||+..
T Consensus 393 ~~s~ee~~~~~~~~L~~~~g~~~~~~p~~~~~~~w~~a~P~~~~g~~~~~~~~~~~l~~~~~~~l~~aG~~~~g 466 (496)
T PLN02576 393 SASEEELVEAVDRDLRKLLLKPGAPPPKVVGVRVWPKAIPQYLLGHLDVLEAAEKMEKDLGLPGLFLGGNYRGG 466 (496)
T ss_pred cCCHHHHHHHHHHHHHHHhCCCCCCCCcEEEEeEcCcccCCCCcCHHHHHHHHHHHHHhcCCCCEEEeccccCC
Confidence 4789999999999999999853212344556778889999999998655543333 22 799999999984
>PLN02529 lysine-specific histone demethylase 1
Back Show alignment and domain information
Probab=97.59 E-value=0.00015 Score=61.25 Aligned_cols=80 Identities=10% Similarity=0.004 Sum_probs=49.9
Q ss_pred CCCHHHHHHHHHHHHHHHCCC--CCCCceeeEEEEEeCCcee-----cC-CCCCCC-CCCCCCCC-CCCEEEecCccccC
Q 034492 2 PLPNDEIIRRVAKQVLALFPS--SQGLEVIWSSFVKIGQSLC-----GE-GPGKDP-FRRDQKTP-VKNFFLAGSYTKQI 71 (93)
Q Consensus 2 ~~~deel~~~v~~eL~~~~P~--~~~a~v~~~~Vire~~Atf-----~~-~PG~~~-~RP~~~T~-~~nLfLAGDwt~t~ 71 (93)
.++++++++.++.+|+++|+. .....+....+.+....-| ++ .||... .+.....+ ..+||+|||+|+..
T Consensus 496 ~lsdeeii~~vl~~L~~ifgp~~~~vp~Pi~~v~t~W~~DP~s~GsYS~~~~g~~~~d~~~La~pv~grL~FAGEaTs~~ 575 (738)
T PLN02529 496 NTDPSTLLHRVLSVLRGIYNPKGINVPDPIQTICTRWGSDPLSYGSYSHVRVQSSGSDYDILAESVSGRLFFAGEATTRQ 575 (738)
T ss_pred cCCHHHHHHHHHHHHHHHhCccccccCCceEEEEccCCcCCCCCCCcccCCCCCchhHHHHHhCCCCCCEEEEEHHHhCC
Confidence 478899999999999999963 1112444444444332222 21 222111 11111223 46899999999999
Q ss_pred cccceecccc
Q 034492 72 VWKEQLCLVD 81 (93)
Q Consensus 72 ~pAt~~~~~~ 81 (93)
||+||++|+.
T Consensus 576 ~pgtVeGAi~ 585 (738)
T PLN02529 576 YPATMHGAFL 585 (738)
T ss_pred CCeEeHHHHH
Confidence 9999999875
>TIGR02733 desat_CrtD C-3',4' desaturase CrtD
Back Show alignment and domain information
Probab=97.45 E-value=0.00035 Score=55.07 Aligned_cols=73 Identities=15% Similarity=0.213 Sum_probs=46.5
Q ss_pred HHHHHHHHHHHHHHHCCCCCCCceeeEEEEE----------eCCceecCCCCCC---CCCCCCCCCCCCEEEecCcccc-
Q 034492 5 NDEIIRRVAKQVLALFPSSQGLEVIWSSFVK----------IGQSLCGEGPGKD---PFRRDQKTPVKNFFLAGSYTKQ- 70 (93)
Q Consensus 5 deel~~~v~~eL~~~~P~~~~a~v~~~~Vir----------e~~Atf~~~PG~~---~~RP~~~T~~~nLfLAGDwt~t- 70 (93)
.+++.+++++.|.+.+|... ..|+...|.. ..-+.+-...... ..+|..+|+++||||||+||..
T Consensus 393 k~~~~~~il~~le~~~p~l~-~~i~~~~v~TP~t~~~~~~~~~G~~~G~~~~~~q~~~~~~~~~t~i~gLyl~G~~~~pG 471 (492)
T TIGR02733 393 KKQYTQTIIERLGHYFDLLE-ENWVHVELATPRTFERWTGRPQGIVGGLGQRPSTFGPFGLSSRTPVKGLWLCGDSIHPG 471 (492)
T ss_pred HHHHHHHHHHHHHHHCCCcc-ccEEEEEccCCchHHHHhCCCCcEECCCCcCccccCCcCCCCCCCCCCeEEecCccCCC
Confidence 35688899999999999753 5565555432 1123332222111 1356668999999999999986
Q ss_pred -Ccccceec
Q 034492 71 -IVWKEQLC 78 (93)
Q Consensus 71 -~~pAt~~~ 78 (93)
|+|-.+++
T Consensus 472 ~Gv~g~~~s 480 (492)
T TIGR02733 472 EGTAGVSYS 480 (492)
T ss_pred CcHHHHHHH
Confidence 46655444
Members of this family are slr1293, a carotenoid biosynthesis protein which was shown to be the C-3',4' desaturase (CrtD) of myxoxanthophyll biosynthesis in Synechocystis sp. strain PCC 6803, and close homologs (presumed to be functionally equivalent) from other cyanobacteria, where myxoxanthophyll biosynthesis is either known or expected. This enzyme can act on neurosporene and so presumably catalyzes the first step that is committed to myxoxanthophyll.
>KOG0029 consensus Amine oxidase [Secondary metabolites biosynthesis, transport and catabolism]
Back Show alignment and domain information
Probab=97.44 E-value=0.00019 Score=58.15 Aligned_cols=80 Identities=20% Similarity=0.202 Sum_probs=56.1
Q ss_pred CCCHHHHHHHHHHHHHHHCCCCCCCceeeEEEEEeCC-----ceecC-CCCCCCCC-CCCCCCCCC-EEEecCccccCcc
Q 034492 2 PLPNDEIIRRVAKQVLALFPSSQGLEVIWSSFVKIGQ-----SLCGE-GPGKDPFR-RDQKTPVKN-FFLAGSYTKQIVW 73 (93)
Q Consensus 2 ~~~deel~~~v~~eL~~~~P~~~~a~v~~~~Vire~~-----Atf~~-~PG~~~~R-P~~~T~~~n-LfLAGDwt~t~~p 73 (93)
.+++++++..++..|+++|+.......++..|.+.-. -++.+ .+|....+ .....++.| +|+||++|.+.||
T Consensus 359 ~~~~~~~~~~~~~~l~k~f~~~~~~~p~~~~vt~w~~d~~~~gsys~~~~~~~~~~y~~l~~pi~~~~ffage~t~~~~~ 438 (501)
T KOG0029|consen 359 TLSDSEIVKKAMKLLRKVFGSEEVPDPLDALVTRWGTDPLSGGSYSYVAVGSDGDDYDRLAEPIKNRVFFAGEATSRKYP 438 (501)
T ss_pred cCCHHHHHHHHHHHHHHHhccCcCCCccceeeeeecccccCCccccccCCCCChhHHHHHhccccCcEEecchhhcccCC
Confidence 4789999999999999999933334445555554322 22222 22332223 445678888 9999999999999
Q ss_pred cceecccc
Q 034492 74 KEQLCLVD 81 (93)
Q Consensus 74 At~~~~~~ 81 (93)
.||.+++.
T Consensus 439 ~tm~GA~~ 446 (501)
T KOG0029|consen 439 GTMHGAYL 446 (501)
T ss_pred CchHHHHH
Confidence 99999875
>TIGR02730 carot_isom carotene isomerase
Back Show alignment and domain information
Probab=97.33 E-value=0.00031 Score=55.61 Aligned_cols=72 Identities=7% Similarity=0.062 Sum_probs=45.0
Q ss_pred HHHHHHHHHHHHHHHCCCCCCCceeeEEEEEeCCc--eecCCCC-C---C-------CCC-CCCCCCCCCEEEecCcccc
Q 034492 5 NDEIIRRVAKQVLALFPSSQGLEVIWSSFVKIGQS--LCGEGPG-K---D-------PFR-RDQKTPVKNFFLAGSYTKQ 70 (93)
Q Consensus 5 deel~~~v~~eL~~~~P~~~~a~v~~~~Vire~~A--tf~~~PG-~---~-------~~R-P~~~T~~~nLfLAGDwt~t 70 (93)
.+++.++++..|.+.+|... ..|+...+.. |.. .|...+| . . ..+ |..+|+++||||||+||..
T Consensus 393 k~~~~~~il~~l~~~~p~l~-~~I~~~~~~T-P~t~~r~~~~~~G~~G~~~~~~~~~~~~~~~~~t~i~gLyl~G~~~~p 470 (493)
T TIGR02730 393 KEADAERIIDRLEKIFPGLD-SAIDYKEVGT-PRTHRRFLGRDSGTYGPIPRRTLPGLLPMPFNRTAIPGLYCVGDSCFP 470 (493)
T ss_pred HHHHHHHHHHHHHHHCCChh-hcEEEEEeeC-chhHHHHhCCCCcccCCcccccccccccCCCCCCCCCCeEEecCcCCC
Confidence 45688999999999999753 5555555432 111 1111111 1 0 112 6678999999999999975
Q ss_pred --Ccccceec
Q 034492 71 --IVWKEQLC 78 (93)
Q Consensus 71 --~~pAt~~~ 78 (93)
|+|..|++
T Consensus 471 G~Gv~g~~~s 480 (493)
T TIGR02730 471 GQGLNAVAFS 480 (493)
T ss_pred CCCHHHHHHH
Confidence 56665454
Members of this family, including sll0033 (crtH) of Synechocystis sp. PCC 6803, catalyze a cis-trans isomerization of carotenes to the all-trans lycopene, a reaction that can also occur non-enzymatically in light through photoisomerization.
>PRK12416 protoporphyrinogen oxidase; Provisional
Back Show alignment and domain information
Probab=97.31 E-value=0.00024 Score=55.47 Aligned_cols=68 Identities=10% Similarity=0.032 Sum_probs=51.8
Q ss_pred CCCHHHHHHHHHHHHHHHCCCCCCCceeeEEEEEeCCceecCCCCCCCC----CCCCCCCCCCEEEecCccccC
Q 034492 2 PLPNDEIIRRVAKQVLALFPSSQGLEVIWSSFVKIGQSLCGEGPGKDPF----RRDQKTPVKNFFLAGSYTKQI 71 (93)
Q Consensus 2 ~~~deel~~~v~~eL~~~~P~~~~a~v~~~~Vire~~Atf~~~PG~~~~----RP~~~T~~~nLfLAGDwt~t~ 71 (93)
.+++||+++.++++|+++|+.. ..+...+|.+.+++.+...+|.... ++..+.+.+|||+||||+...
T Consensus 370 ~~~dee~~~~~~~~L~~~lG~~--~~p~~~~v~~W~~a~P~y~~~~~~~~~~~~~~l~~~~~~l~~aG~~~~g~ 441 (463)
T PRK12416 370 NYSEEELVRVALYDIEKSLGIK--GEPEVVEVTNWKDLMPKYHLEHNQAVQSLQEKMMNLYPNIYLAGASYYGV 441 (463)
T ss_pred cCCHHHHHHHHHHHHHHHhCCC--CCceEEEEEEccccCCCcCcCHHHHHHHHHHHHHhhCCCeEEeccccccc
Confidence 4689999999999999999743 4677788999888888887774222 122234468999999998754
>PLN03000 amine oxidase
Back Show alignment and domain information
Probab=97.27 E-value=0.0007 Score=58.30 Aligned_cols=78 Identities=13% Similarity=0.124 Sum_probs=53.0
Q ss_pred CCCHHHHHHHHHHHHHHHCCC--CCCCceeeEEEEEeCCceecCCCCCCCC-CCCC--------CCCC--CCEEEecCcc
Q 034492 2 PLPNDEIIRRVAKQVLALFPS--SQGLEVIWSSFVKIGQSLCGEGPGKDPF-RRDQ--------KTPV--KNFFLAGSYT 68 (93)
Q Consensus 2 ~~~deel~~~v~~eL~~~~P~--~~~a~v~~~~Vire~~Atf~~~PG~~~~-RP~~--------~T~~--~nLfLAGDwt 68 (93)
.++++++++.++.+|+++|+. .....++...+.+....-|.. |++.. .|+. ..|+ .+||+||+.|
T Consensus 520 ~lSdeE~ve~vl~~Lrkifg~~~~~vp~Pv~~ivtrW~~DPysr--GSYS~~~pG~~~~~~d~LaePv~~GRIfFAGEaT 597 (881)
T PLN03000 520 TMPPTDAVTRVLHILRGIYEPQGINVPDPLQTVCTRWGGDPFSL--GSYSNVAVGASGDDYDILAESVGDGRLFFAGEAT 597 (881)
T ss_pred cCCHHHHHHHHHHHHHHHhCccccccCCceEEEEccCCCCCCCC--ccccCCCCCCchHHHHHHhCcCCCCcEEEeehHH
Confidence 478999999999999999963 112345556566544433332 33222 2333 2354 3799999999
Q ss_pred ccCcccceecccc
Q 034492 69 KQIVWKEQLCLVD 81 (93)
Q Consensus 69 ~t~~pAt~~~~~~ 81 (93)
...||+||++|+.
T Consensus 598 s~~~~GTVhGAie 610 (881)
T PLN03000 598 TRRYPATMHGAFV 610 (881)
T ss_pred hCCCCeeHHHHHH
Confidence 9999999999874
>TIGR02734 crtI_fam phytoene desaturase
Back Show alignment and domain information
Probab=97.23 E-value=0.00061 Score=53.77 Aligned_cols=73 Identities=14% Similarity=0.045 Sum_probs=47.1
Q ss_pred HHHHHHHHHHHHHHH-CCCCCCCceeeEEEEE----------eCCceecCCCC---CCCCCCC-CCCCCCCEEEecCccc
Q 034492 5 NDEIIRRVAKQVLAL-FPSSQGLEVIWSSFVK----------IGQSLCGEGPG---KDPFRRD-QKTPVKNFFLAGSYTK 69 (93)
Q Consensus 5 deel~~~v~~eL~~~-~P~~~~a~v~~~~Vir----------e~~Atf~~~PG---~~~~RP~-~~T~~~nLfLAGDwt~ 69 (93)
.+++.+++++.|.+. +|... ..|+...+.. ..-+.+-..+. ....||. .+|+++||||||+||.
T Consensus 391 k~~~~~~il~~l~~~~~p~l~-~~i~~~~~~TP~t~~~~~~~~~G~~~G~~~~~~q~~~~rp~~~~t~i~gLyl~G~~~~ 469 (502)
T TIGR02734 391 GPRYRDRILAYLEERAIPGLR-DRIVVERTFTPADFRDRYNAWLGSAFSLEHTLTQSAWFRPHNRDRKIDNLYLVGAGTH 469 (502)
T ss_pred HHHHHHHHHHHHHHhcCCChh-HheEEEEEcCHHHHHHhcCCCCccccchhhchhhcccCCCCCCCCCCCCEEEeCCCCC
Confidence 456889999999997 99763 4555555432 11233322211 1225775 4789999999999998
Q ss_pred c--Ccccceec
Q 034492 70 Q--IVWKEQLC 78 (93)
Q Consensus 70 t--~~pAt~~~ 78 (93)
. |.|..+++
T Consensus 470 pG~Gv~g~~~s 480 (502)
T TIGR02734 470 PGAGVPGVLGS 480 (502)
T ss_pred CCCCHHHHHHH
Confidence 6 57765554
Phytoene is converted to lycopene by desaturation at four (two symmetrical pairs of) sites. This is achieved by two enzymes (crtP and crtQ) in cyanobacteria (Gloeobacter being an exception) and plants, but by a single enzyme in most other bacteria and in fungi. This single enzyme is called the bacterial-type phytoene desaturase, or CrtI. Most members of this family, part of the larger Pfam family pfam01593, which also contains amino oxidases, are CrtI itself; it is likely that all members act on either phytoene or on related compounds such as dehydrosqualene, for carotenoid biosynthesis.
>PLN02976 amine oxidase
Back Show alignment and domain information
Probab=97.22 E-value=0.00037 Score=62.92 Aligned_cols=80 Identities=15% Similarity=0.076 Sum_probs=55.0
Q ss_pred CCCHHHHHHHHHHHHHHHCCCCCCCceeeEEEEEeCCceec------CCCCCCC-CCCCCCCCCCC-EEEecCccccCcc
Q 034492 2 PLPNDEIIRRVAKQVLALFPSSQGLEVIWSSFVKIGQSLCG------EGPGKDP-FRRDQKTPVKN-FFLAGSYTKQIVW 73 (93)
Q Consensus 2 ~~~deel~~~v~~eL~~~~P~~~~a~v~~~~Vire~~Atf~------~~PG~~~-~RP~~~T~~~n-LfLAGDwt~t~~p 73 (93)
.++++++++.++.+|+++|+......+....+.+....-|. ..||... .+.....|+.| ||+||+.|...||
T Consensus 1086 sLSDEE~Ve~ALe~LrKlFG~~~iPdPv~~vvTrWssDPySrGSYSy~~PGs~~~d~d~LAePVggRLFFAGEATS~~~p 1165 (1713)
T PLN02976 1086 SMSSSDHVNHALMVLRKLFGEALVPDPVASVVTDWGRDPFSYGAYSYVAIGASGEDYDILGRPVENCLFFAGEATCKEHP 1165 (1713)
T ss_pred hCCHHHHHHHHHHHHHHHcCcccccCcceeEEecCCCCCCcCccccCCCCCCCchHHHHHhCCCCCcEEEEehhhhCCCc
Confidence 47899999999999999998533345666666654333222 2344322 12222356666 9999999999999
Q ss_pred cceecccc
Q 034492 74 KEQLCLVD 81 (93)
Q Consensus 74 At~~~~~~ 81 (93)
.||.+|+.
T Consensus 1166 GTVHGAIe 1173 (1713)
T PLN02976 1166 DTVGGAMM 1173 (1713)
T ss_pred chHHHHHH
Confidence 99999874
>PLN02328 lysine-specific histone demethylase 1 homolog
Back Show alignment and domain information
Probab=97.13 E-value=0.0012 Score=56.36 Aligned_cols=80 Identities=15% Similarity=0.078 Sum_probs=52.8
Q ss_pred CCCHHHHHHHHHHHHHHHCCCC--CCCceeeEEEEEeCCceecC------CCCCCC-CCCCCCCCC--CCEEEecCcccc
Q 034492 2 PLPNDEIIRRVAKQVLALFPSS--QGLEVIWSSFVKIGQSLCGE------GPGKDP-FRRDQKTPV--KNFFLAGSYTKQ 70 (93)
Q Consensus 2 ~~~deel~~~v~~eL~~~~P~~--~~a~v~~~~Vire~~Atf~~------~PG~~~-~RP~~~T~~--~nLfLAGDwt~t 70 (93)
.++++++++.++++|+++|+.. ....+....+.+....-|.. .||... ..+....++ .+||+||++|..
T Consensus 576 ~lsdeE~v~~vL~~Lr~ifgp~~~~vp~P~~~~vtrW~~DP~s~GSYS~~~pG~~~~~~~~LaePv~~GRL~FAGEaTs~ 655 (808)
T PLN02328 576 TLSPVESVKRVLQILRGIFHPKGIVVPDPVQAVCTRWGKDCFTYGSYSYVAVGSSGDDYDILAESVGDGRVFFAGEATNK 655 (808)
T ss_pred cCCHHHHHHHHHHHHHHHhCcccccccCcceEEEecCCCCCCcCCCCCCCCCCCchhHHHHHhccCCCCCEEEEEhhHhC
Confidence 4789999999999999999631 12345566666655443332 233321 111112233 479999999999
Q ss_pred Ccccceecccc
Q 034492 71 IVWKEQLCLVD 81 (93)
Q Consensus 71 ~~pAt~~~~~~ 81 (93)
.|+++|++|+.
T Consensus 656 ~~~GtVhGAi~ 666 (808)
T PLN02328 656 QYPATMHGAFL 666 (808)
T ss_pred CCCeEhHHHHH
Confidence 99999999864
>PLN02676 polyamine oxidase
Back Show alignment and domain information
Probab=97.08 E-value=0.0018 Score=51.94 Aligned_cols=79 Identities=11% Similarity=-0.030 Sum_probs=52.9
Q ss_pred CCCHHHHHHHHHHHHHHHCCCCCCCceeeEEEEE---eCCce--e-cCCCCCCC-CCCCCCCCCCCEEEecCccccCccc
Q 034492 2 PLPNDEIIRRVAKQVLALFPSSQGLEVIWSSFVK---IGQSL--C-GEGPGKDP-FRRDQKTPVKNFFLAGSYTKQIVWK 74 (93)
Q Consensus 2 ~~~deel~~~v~~eL~~~~P~~~~a~v~~~~Vir---e~~At--f-~~~PG~~~-~RP~~~T~~~nLfLAGDwt~t~~pA 74 (93)
.+++++.++.++++|+++|+.. ...+....+.. ++.+. + .+.||... .++.-+.|+.+||+||+.|+..|+.
T Consensus 375 ~~s~e~~~~~vl~~L~~~~g~~-~~~p~~~~~~~W~~dp~s~Gsys~~~pG~~~~~~~~L~~P~gri~FAGe~ts~~~~g 453 (487)
T PLN02676 375 QQPDSETKAEIMEVLRKMFGPN-IPEATDILVPRWWSNRFFKGSYSNWPIGVSRYEFDQIRAPVGRVYFTGEHTSEKYNG 453 (487)
T ss_pred hCCHHHHHHHHHHHHHHHhCCC-CCCcceEEecccCCCCCCCcccCCCCCCCChhHHHHHhCCCCceEEecccccccccc
Confidence 4788999999999999999732 23344443332 22211 1 13455432 2233346778999999999999999
Q ss_pred ceecccc
Q 034492 75 EQLCLVD 81 (93)
Q Consensus 75 t~~~~~~ 81 (93)
+|++|+.
T Consensus 454 ~~eGA~~ 460 (487)
T PLN02676 454 YVHGAYL 460 (487)
T ss_pred chHHHHH
Confidence 9999875
>PLN02568 polyamine oxidase
Back Show alignment and domain information
Probab=96.25 E-value=0.011 Score=48.28 Aligned_cols=80 Identities=16% Similarity=0.118 Sum_probs=49.7
Q ss_pred CCCHHHHHHHHHHHHHHHCCCCCC---------------------CceeeEEEEEe---CCce--e-cCCCCCCCC-CCC
Q 034492 2 PLPNDEIIRRVAKQVLALFPSSQG---------------------LEVIWSSFVKI---GQSL--C-GEGPGKDPF-RRD 53 (93)
Q Consensus 2 ~~~deel~~~v~~eL~~~~P~~~~---------------------a~v~~~~Vire---~~At--f-~~~PG~~~~-RP~ 53 (93)
.++++++++.++..|+++|+.... ..+....+.+. +.+. + .+.||+... +-.
T Consensus 402 ~l~~~~~~~~~~~~L~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~t~W~~dp~~~GsYs~~~~g~~~~~~~~ 481 (539)
T PLN02568 402 KLSDEEIIRGVQTTLSSFLKRRVAGLGSQSHPLCNGGASSNDGSRWKFVKVLKSKWGTDPLFLGSYSYVAVGSSGDDLDR 481 (539)
T ss_pred cCCHHHHHHHHHHHHHHHcCCcccCcccccccccccccccccccCCCCceEEeCCCCCCCccCCccCCCcCCCChhHHHH
Confidence 478999999999999999973211 23444433332 2221 1 123454321 111
Q ss_pred CCCCC-------------CCEEEecCccccCcccceecccc
Q 034492 54 QKTPV-------------KNFFLAGSYTKQIVWKEQLCLVD 81 (93)
Q Consensus 54 ~~T~~-------------~nLfLAGDwt~t~~pAt~~~~~~ 81 (93)
-+.|+ .+||+||.-|+..|+.||.+|..
T Consensus 482 La~P~~~~~~~~~~~~~~~~l~FAGEat~~~~~~Tv~GA~~ 522 (539)
T PLN02568 482 MAEPLPRISDHDQAGGPPLQLLFAGEATHRTHYSTTHGAYF 522 (539)
T ss_pred HhCccccccccccccCCCccEEEeecccCCCccchHHHHHH
Confidence 12233 36999999999999999999864
>KOG4254 consensus Phytoene desaturase [Coenzyme transport and metabolism]
Back Show alignment and domain information
Probab=95.50 E-value=0.055 Score=44.44 Aligned_cols=65 Identities=18% Similarity=0.142 Sum_probs=44.0
Q ss_pred HHHHHHHHHHHHHHHCCCCCCCceeeEEEE---------EeCC-ceecCCCCC---CCCCCCC-----CCCCCCEEEecC
Q 034492 5 NDEIIRRVAKQVLALFPSSQGLEVIWSSFV---------KIGQ-SLCGEGPGK---DPFRRDQ-----KTPVKNFFLAGS 66 (93)
Q Consensus 5 deel~~~v~~eL~~~~P~~~~a~v~~~~Vi---------re~~-Atf~~~PG~---~~~RP~~-----~T~~~nLfLAGD 66 (93)
+++.++++++.+.+++|.+.. .|+...|. ..++ ..|..+-|. +-.||-. +|||+||||+||
T Consensus 444 K~~~ae~~~~~ie~l~Pgfss-sv~~~dvgTP~t~qr~l~~~~Gn~~~~~~~ld~g~l~~Pv~~~s~y~tPI~~LYlcGs 522 (561)
T KOG4254|consen 444 KEAFAERVFSVIEKLAPGFSS-SVESYDVGTPPTHQRFLGRPGGNIFHGAMGLDQGYLHRPVMAWSNYSTPIPGLYLCGS 522 (561)
T ss_pred HHHHHHHHHHHHHHHcCCccc-eEEEEecCCCchhhHHhcCCCCcccCcccccccccccCCccccccCCCCCCceEEecC
Confidence 567899999999999998753 34444332 2222 334422232 2348888 999999999999
Q ss_pred cccc
Q 034492 67 YTKQ 70 (93)
Q Consensus 67 wt~t 70 (93)
-+.+
T Consensus 523 ~afP 526 (561)
T KOG4254|consen 523 GAFP 526 (561)
T ss_pred CCCC
Confidence 8765
>COG1232 HemY Protoporphyrinogen oxidase [Coenzyme metabolism]
Back Show alignment and domain information
Probab=95.37 E-value=0.0077 Score=48.46 Aligned_cols=74 Identities=9% Similarity=0.110 Sum_probs=56.8
Q ss_pred CCCHHHHHHHHHHHHHHHCCCCCCCceeeEEEEEeCCceecCCCCCCCCCCCCCCC----CCCEEEecCccccCccccee
Q 034492 2 PLPNDEIIRRVAKQVLALFPSSQGLEVIWSSFVKIGQSLCGEGPGKDPFRRDQKTP----VKNFFLAGSYTKQIVWKEQL 77 (93)
Q Consensus 2 ~~~deel~~~v~~eL~~~~P~~~~a~v~~~~Vire~~Atf~~~PG~~~~RP~~~T~----~~nLfLAGDwt~t~~pAt~~ 77 (93)
.++||||++.++.+|.++++... ..++.+|.|.+++-+.+.+|...++...+.. .+|++++|-|-.- +-..-
T Consensus 355 ~~~dee~~~~~l~~L~~~~~~~~--~~~~~~v~r~~~~~PqY~vG~~~~~~~ir~~l~~~y~gi~~~G~~~~g--~g~~d 430 (444)
T COG1232 355 TMSDEELVAAVLDDLKKLGGING--DPVFVEVTRWKYAMPQYEVGHLDRLEPIRAALKGAYPGIKSVGRYGEG--VGLPD 430 (444)
T ss_pred ccCHHHHHHHHHHHHHHHcCcCc--chhheeeeeccccCCccchhHHHHHHHHHHhhccccCCeEEeccCCCC--CCchH
Confidence 46799999999999999999653 2338899999999999999988776544433 3689999976654 44444
Q ss_pred cc
Q 034492 78 CL 79 (93)
Q Consensus 78 ~~ 79 (93)
|.
T Consensus 431 ~I 432 (444)
T COG1232 431 CI 432 (444)
T ss_pred HH
Confidence 44
>COG1233 Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]
Back Show alignment and domain information
Probab=94.65 E-value=0.12 Score=41.47 Aligned_cols=68 Identities=18% Similarity=0.224 Sum_probs=39.6
Q ss_pred HHHHHHHHHHHHHCCCCCCCceeeEEEEE----eC-----Cc-eec---CCCCCCCCCCCC-CCCCCCEEEecCccccCc
Q 034492 7 EIIRRVAKQVLALFPSSQGLEVIWSSFVK----IG-----QS-LCG---EGPGKDPFRRDQ-KTPVKNFFLAGSYTKQIV 72 (93)
Q Consensus 7 el~~~v~~eL~~~~P~~~~a~v~~~~Vir----e~-----~A-tf~---~~PG~~~~RP~~-~T~~~nLfLAGDwt~t~~ 72 (93)
++.+. ..++.+.+|... ..++..++.. |+ +- .+. ........||.. +|+++||||+|++|+.|=
T Consensus 386 ~~~~~-~~~~~~~~p~~~-~~iv~~~~~tp~~~e~~~~~~~G~~~~~~~~~~q~~~~rp~~~~t~i~~LYl~Ga~t~PG~ 463 (487)
T COG1233 386 SLADA-IDALEELAPGLR-DRIVAREVLTPLDLERYLGLPGGDIFGGAHTLDQLGPFRPPPKSTPIKGLYLVGASTHPGG 463 (487)
T ss_pred HHHHH-HHHHhhcCCCcc-cceeEEEEeChHHHHHhcCCCCCcccchhcChhhhcCCCCCCCCCCcCceEEeCCcCCCCC
Confidence 34444 447889999764 4555555553 11 00 111 012233457765 599999999999998754
Q ss_pred ccce
Q 034492 73 WKEQ 76 (93)
Q Consensus 73 pAt~ 76 (93)
-=+|
T Consensus 464 Gv~g 467 (487)
T COG1233 464 GVPG 467 (487)
T ss_pred Ccch
Confidence 4433
>COG3380 Predicted NAD/FAD-dependent oxidoreductase [General function prediction only]
Back Show alignment and domain information
Probab=86.07 E-value=1.1 Score=34.89 Aligned_cols=67 Identities=10% Similarity=0.100 Sum_probs=42.5
Q ss_pred CCCCHHHHHHHHHHHHHHHCCCCCCCceeeEEEEEeCCceecCCCCCCCCCCCCCCCCCCEEEecCccccC
Q 034492 1 MPLPNDEIIRRVAKQVLALFPSSQGLEVIWSSFVKIGQSLCGEGPGKDPFRRDQKTPVKNFFLAGSYTKQI 71 (93)
Q Consensus 1 ~~~~deel~~~v~~eL~~~~P~~~~a~v~~~~Vire~~Atf~~~PG~~~~RP~~~T~~~nLfLAGDwt~t~ 71 (93)
+++++|..+..+...-.++++. ..+.+..+.+.+.+.|.+...-+. -|-...+--+|+.||||...+
T Consensus 245 ~~~~~e~~i~~l~aA~~~~~~~-~~~~p~~s~~H~WrYA~P~~~~~~---~~L~ad~~~~l~~cGDwc~Gg 311 (331)
T COG3380 245 LDHPAEQVIVALRAAAQELDGD-RLPEPDWSDAHRWRYAIPNDAVAG---PPLDADRELPLYACGDWCAGG 311 (331)
T ss_pred hcCCHHHHHHHHHHhhhhccCC-CCCcchHHHhhccccccccccccC---CccccCCCCceeeecccccCc
Confidence 3567777776666666666652 225566677788888776654432 222223344699999999874
>COG1231 Monoamine oxidase [Amino acid transport and metabolism]
Back Show alignment and domain information
Probab=84.93 E-value=2.1 Score=34.86 Aligned_cols=81 Identities=15% Similarity=0.101 Sum_probs=51.6
Q ss_pred CCCHHHHHHHHHHHHHHHCCCCCCCceeeEEEEE------eCCceecCCCCCCCC-CCCCCCCCCCEEEecCccccCccc
Q 034492 2 PLPNDEIIRRVAKQVLALFPSSQGLEVIWSSFVK------IGQSLCGEGPGKDPF-RRDQKTPVKNFFLAGSYTKQIVWK 74 (93)
Q Consensus 2 ~~~deel~~~v~~eL~~~~P~~~~a~v~~~~Vir------e~~Atf~~~PG~~~~-RP~~~T~~~nLfLAGDwt~t~~pA 74 (93)
.++.++.++.+..++.++||+...........+. ..-.+-...||+... =|...-+...+++||-=+.+.|+.
T Consensus 348 ~~~~~~r~~~vl~~l~~~~g~~a~~~f~~~~~~~W~~dpwt~G~~aa~~~g~~~~~~~~l~~p~gRIh~AgtEhas~~~G 427 (450)
T COG1231 348 ALPEAERRQKVLARLAKLFGDEAADPFDYGASVDWSKDPWTLGGTAAYPPGQRTKLYPTLPAPHGRIHFAGTEHASEFGG 427 (450)
T ss_pred cCCHHHHHHHHHHhHhhhCChhhccccccceeeecccCCcCCccccccCCcccccccccccCCCCceEEeeecccccccc
Confidence 5788999999999999999953222222212222 122233344554322 244445678899999556668999
Q ss_pred ceeccccC
Q 034492 75 EQLCLVDK 82 (93)
Q Consensus 75 t~~~~~~~ 82 (93)
.|++++..
T Consensus 428 w~eGAi~S 435 (450)
T COG1231 428 WLEGAIRS 435 (450)
T ss_pred hhHHHHHH
Confidence 99998864
Homologous Structure Templates
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
ID Alignment Graph Length
Definition
Probability Query 93
3ka7_A 425
Oxidoreductase; structural genomics, PSI-2, protei
99.0 1b37_A 472
Protein (polyamine oxidase); flavin-dependent amin
98.52 3qj4_A 342
Renalase; FAD/NAD(P)-binding rossmann fold superfa
98.51 1s3e_A 520
Amine oxidase [flavin-containing] B; human monoami
98.46 3nrn_A 421
Uncharacterized protein PF1083; alpha-beta protein
98.46 2yg5_A 453
Putrescine oxidase; oxidoreductase, flavin; HET: F
98.22 2z3y_A 662
Lysine-specific histone demethylase 1; chromatin,
98.17 2xag_A 852
Lysine-specific histone demethylase 1; amine oxida
98.1 2e1m_C 181
L-glutamate oxidase; L-amino acid oxidase, FAD, L-
98.03 3lov_A 475
Protoporphyrinogen oxidase; structural genomics, J
97.99 2vvm_A 495
Monoamine oxidase N; FAD, peroxisome, flavoprotein
97.94 4gut_A 776
Lysine-specific histone demethylase 1B; histone de
97.89 3i6d_A 470
Protoporphyrinogen oxidase; protein-inhibitor comp
97.89 1sez_A 504
Protoporphyrinogen oxidase, mitochondrial; FAD-bin
97.75 3nks_A 477
Protoporphyrinogen oxidase; FAD containing protein
97.74 4dgk_A 501
Phytoene dehydrogenase; the FAD/NAD(P)-binding ros
97.64 2jae_A 489
L-amino acid oxidase; oxidoreductase, dimerisation
97.56 1yvv_A 336
Amine oxidase, flavin-containing; oxidoreductase,
97.46 2ivd_A 478
PPO, PPOX, protoporphyrinogen oxidase; porphyrin b
97.29 4gde_A 513
UDP-galactopyranose mutase; flavin adenine dinucle
97.0 3k7m_X 431
6-hydroxy-L-nicotine oxidase; enantiomeric substra
96.51 2iid_A 498
L-amino-acid oxidase; flavoenzyme, FAD binding dom
96.49 1rsg_A 516
FMS1 protein; FAD binding motif, oxidoreductase; H
95.57 4dsg_A 484
UDP-galactopyranose mutase; rossmann fold, flavin
95.16 2b9w_A 424
Putative aminooxidase; isomerase, conjugated linol
94.65 3kkj_A 336
Amine oxidase, flavin-containing; oxidoreductase,
94.03
>3ka7_A Oxidoreductase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: FAD; 1.80A {Methanosarcina mazei}
Back Hide alignment and structure
Probab=99.00 E-value=8.5e-10 Score=82.10 Aligned_cols=71 Identities=14% Similarity=0.108 Sum_probs=59.5
Q ss_pred HHHHHHHHHHHHHHCCCCCCCceeeEEEEEeCCceecCCCCCCCCCCCCCCCCCCEEEecCccccCcccceeccc
Q 034492 6 DEIIRRVAKQVLALFPSSQGLEVIWSSFVKIGQSLCGEGPGKDPFRRDQKTPVKNFFLAGSYTKQIVWKEQLCLV 80 (93)
Q Consensus 6 eel~~~v~~eL~~~~P~~~~a~v~~~~Vire~~Atf~~~PG~~~~RP~~~T~~~nLfLAGDwt~t~~pAt~~~~~ 80 (93)
++++++++++|++++|.. .+.+ ..|.+.+.+.+.+.||. ..||.++||++||||||||+.+.++.+|+.++
T Consensus 343 ~~~~~~~~~~l~~~~p~~-~~~~--~~v~~~~~~~P~~~~~~-~~~~~~~~p~~gL~laG~~~~~~gg~gv~~~~ 413 (425)
T 3ka7_A 343 ESEIEMGLEDLKEIFPGK-RYEV--LLIQSYHDEWPVNRAAS-GTDPGNETPFSGLYVVGDGAKGKGGIEVEGVA 413 (425)
T ss_dssp HHHHHHHHHHHHHHSTTC-CEEE--EEEEEEBTTBCSBSSCT-TCCCCSBCSSBTEEECSTTSCCTTCCHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCC-ceEE--EEEEEECCCcccccccc-CCCCCCCCCcCCeEEeCCccCCCCCCccHHHH
Confidence 566799999999999972 2333 47778889999999984 57899999999999999999999998887654
>1b37_A Protein (polyamine oxidase); flavin-dependent amine oxidase, oxidoreductase; HET: NAG FCA MAN FAD; 1.90A {Zea mays} SCOP: c.3.1.2 d.16.1.5 PDB: 1b5q_A* 1h81_A* 1h82_A* 1h83_A* 1h84_A* 1h86_A* 3kpf_A* 3ku9_A* 3l1r_A*
Back Show alignment and structure
Probab=98.52 E-value=2e-08 Score=76.56 Aligned_cols=80 Identities=9% Similarity=0.037 Sum_probs=58.1
Q ss_pred CCCHHHHHHHHHHHHHHHCCCCCCCceeeEEEEEe---C--Cceec-CCCCCCC-CCCCCCCCCCCEEEecCccccCccc
Q 034492 2 PLPNDEIIRRVAKQVLALFPSSQGLEVIWSSFVKI---G--QSLCG-EGPGKDP-FRRDQKTPVKNFFLAGSYTKQIVWK 74 (93)
Q Consensus 2 ~~~deel~~~v~~eL~~~~P~~~~a~v~~~~Vire---~--~Atf~-~~PG~~~-~RP~~~T~~~nLfLAGDwt~t~~pA 74 (93)
.++++++++.++++|++++|......+++..+.+. + +..+. ..||... .++..++|++|||+|||+|+..|++
T Consensus 359 ~~~~~e~~~~~l~~L~~~~Pg~~~~~~~~~~~~~W~~~~~~~G~~~~~~~g~~~~~~~~l~~p~~~l~fAG~~t~~~~~g 438 (472)
T 1b37_A 359 QQSDEQTKAEIMQVLRKMFPGKDVPDATDILVPRWWSDRFYKGTFSNWPVGVNRYEYDQLRAPVGRVYFTGEHTSEHYNG 438 (472)
T ss_dssp TSCHHHHHHHHHHHHHHHCTTSCCCCCSEEECCCTTTCTTTSSSEEECBTTCCHHHHHHHHCCBTTEEECSGGGCTTTTT
T ss_pred hCCHHHHHHHHHHHHHHHcCCCCCCCCceEEecccCCCCCCCcccCCCCCCCChhHHHHHhccCCcEEEeecccCCCCCC
Confidence 36899999999999999998643344444443332 1 23333 4567642 3567788999999999999999999
Q ss_pred ceecccc
Q 034492 75 EQLCLVD 81 (93)
Q Consensus 75 t~~~~~~ 81 (93)
+|++++.
T Consensus 439 ~v~GA~~ 445 (472)
T 1b37_A 439 YVHGAYL 445 (472)
T ss_dssp SHHHHHH
T ss_pred chhHHHH
Confidence 9998853
>3qj4_A Renalase; FAD/NAD(P)-binding rossmann fold superfamily, flavin contain oxidoreductase, monoamine oxidase, NAD, extracellular, oxidoreductase; HET: FAD; 2.50A {Homo sapiens}
Back Show alignment and structure
Probab=98.51 E-value=2.2e-07 Score=67.67 Aligned_cols=72 Identities=14% Similarity=0.019 Sum_probs=55.9
Q ss_pred CCCCHHHHHHHHHHHHHHHCCCCCCCceeeEEEEEeCCceecCCCCCCCCCCCCCC--CCCCEEEecCccccCcccceec
Q 034492 1 MPLPNDEIIRRVAKQVLALFPSSQGLEVIWSSFVKIGQSLCGEGPGKDPFRRDQKT--PVKNFFLAGSYTKQIVWKEQLC 78 (93)
Q Consensus 1 ~~~~deel~~~v~~eL~~~~P~~~~a~v~~~~Vire~~Atf~~~PG~~~~RP~~~T--~~~nLfLAGDwt~t~~pAt~~~ 78 (93)
+++++|||++.+.++|.++++.. ..+.+.+|.|.++|.+.... ..+|+... ..+||+|||||+... +++.
T Consensus 255 ~~~~~~~~~~~~~~~l~~~~g~~--~~p~~~~v~rW~~a~p~~~~---~~~~~~~~~~~~~~l~laGd~~~g~---~v~~ 326 (342)
T 3qj4_A 255 LEHSIEDVQELVFQQLENILPGL--PQPIATKCQKWRHSQVTNAA---ANCPGQMTLHHKPFLACGGDGFTQS---NFDG 326 (342)
T ss_dssp TTSCHHHHHHHHHHHHHHHSCSC--CCCSEEEEEEETTCSBSSCC---SSSCSCEEEETTTEEEECSGGGSCS---SHHH
T ss_pred hcCCHHHHHHHHHHHHHHhccCC--CCCceeeecccccccccccc---CCCcceeEecCCccEEEEccccCCC---CccH
Confidence 36789999999999999999843 56788899999999875433 23676664 789999999999753 5554
Q ss_pred cc
Q 034492 79 LV 80 (93)
Q Consensus 79 ~~ 80 (93)
++
T Consensus 327 ai 328 (342)
T 3qj4_A 327 CI 328 (342)
T ss_dssp HH
T ss_pred HH
Confidence 43
>1s3e_A Amine oxidase [flavin-containing] B; human monoamine oxidase, inhibitor binding, rasagiline, enantioselectivity, oxidoreductase; HET: FAD RHP; 1.60A {Homo sapiens} SCOP: c.3.1.2 d.16.1.5 PDB: 1gos_A* 1oj9_A* 1ojb_A* 1ojc_A* 1ojd_A* 1s2q_A* 1s2y_A* 1oja_A* 1s3b_A* 2bk3_A* 2byb_A* 2c64_A* 2c65_A* 2c66_A* 2c67_A* 2c70_A* 2v5z_A* 2v60_A* 2v61_A* 2vrl_A* ...
Back Show alignment and structure
Probab=98.46 E-value=4.6e-08 Score=75.37 Aligned_cols=79 Identities=18% Similarity=0.177 Sum_probs=59.1
Q ss_pred CCCHHHHHHHHHHHHHHHCCCCCCCceeeEEEEEeCCceec-------CCCCCC-CCCCCCCCCCCCEEEecCccccCcc
Q 034492 2 PLPNDEIIRRVAKQVLALFPSSQGLEVIWSSFVKIGQSLCG-------EGPGKD-PFRRDQKTPVKNFFLAGSYTKQIVW 73 (93)
Q Consensus 2 ~~~deel~~~v~~eL~~~~P~~~~a~v~~~~Vire~~Atf~-------~~PG~~-~~RP~~~T~~~nLfLAGDwt~t~~p 73 (93)
.++++|+++.++++|+++||.....++.+..+.+..+..|. +.||.. ..+|..+++++|||+|||++++.|+
T Consensus 354 ~~~~~e~~~~vl~~L~~~~~~~~~~~p~~~~~~~W~~~~~~~G~~~~~~~~g~~~~~~~~l~~p~~~L~fAG~~t~~~~~ 433 (520)
T 1s3e_A 354 RLTKEERLKKLCELYAKVLGSLEALEPVHYEEKNWCEEQYSGGCYTTYFPPGILTQYGRVLRQPVDRIYFAGTETATHWS 433 (520)
T ss_dssp TSCHHHHHHHHHHHHHHHHTCGGGGCCSEEEEEEGGGCTTTCSSSCBCCCTTHHHHHGGGTTCCBTTEEECSGGGCSSST
T ss_pred cCCHHHHHHHHHHHHHHHhCccccCCccEEEEEeeCCCCCCCCCCccccCCCccccchHHHhCCCCCEEEeehhhcCcCc
Confidence 46899999999999999998532245666667665544332 455542 2356778899999999999999999
Q ss_pred cceeccc
Q 034492 74 KEQLCLV 80 (93)
Q Consensus 74 At~~~~~ 80 (93)
.+|++++
T Consensus 434 g~v~GAi 440 (520)
T 1s3e_A 434 GYMEGAV 440 (520)
T ss_dssp TSHHHHH
T ss_pred EEhHHHH
Confidence 9998865
>3nrn_A Uncharacterized protein PF1083; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: AMP; 2.10A {Pyrococcus furiosus}
Back Show alignment and structure
Probab=98.46 E-value=2.3e-07 Score=69.34 Aligned_cols=69 Identities=13% Similarity=0.106 Sum_probs=43.6
Q ss_pred CHHHHHHHHHHHHHHHCCCCCCCceeeEEEEEeCCceecCCCCCCCCCCCCCCCCCCEEEecCccccCcccceeccc
Q 034492 4 PNDEIIRRVAKQVLALFPSSQGLEVIWSSFVKIGQSLCGEGPGKDPFRRDQKTPVKNFFLAGSYTKQIVWKEQLCLV 80 (93)
Q Consensus 4 ~deel~~~v~~eL~~~~P~~~~a~v~~~~Vire~~Atf~~~PG~~~~RP~~~T~~~nLfLAGDwt~t~~pAt~~~~~ 80 (93)
+.+++++.+.++|.+++| .++++..+.++....++...+|.. .+ .++ +||||||||++..+..+|+.++
T Consensus 325 ~~~~~~~~~~~~L~~~~p---~~~~~~~~~~~~~~p~~~~~~~~~--~~--~~~-~gl~laGd~~~~~~g~~~~ga~ 393 (421)
T 3nrn_A 325 NVKKAIEKGWEELLEIFP---EGEPLLAQVYRDGNPVNRTRAGLH--IE--WPL-NEVLVVGDGYRPPGGIEVDGIA 393 (421)
T ss_dssp CHHHHHHHHHHHHHHHCT---TCEEEEEEEC-------------C--CC--CCC-SSEEECSTTCCCTTCCHHHHHH
T ss_pred cHHHHHHHHHHHHHHHcC---CCeEEEeeeccCCCCcccccCCCC--CC--CCC-CcEEEECCcccCCCceeeehHH
Confidence 345679999999999999 366666555555555555566663 33 788 9999999999988777776654
>2yg5_A Putrescine oxidase; oxidoreductase, flavin; HET: FAD; 1.90A {Rhodococcus erythropolis} PDB: 2yg6_A* 2yg3_A* 2yg4_A* 2yg7_A* 3rha_A*
Back Show alignment and structure
Probab=98.22 E-value=2.3e-07 Score=69.72 Aligned_cols=77 Identities=14% Similarity=0.060 Sum_probs=54.9
Q ss_pred CCHHHHHHHHHHHHHHHCCCCCCCceeeEEEEEeCCcee-------cCCCCCC-CCCCCCCCCCCCEEEecCccccCccc
Q 034492 3 LPNDEIIRRVAKQVLALFPSSQGLEVIWSSFVKIGQSLC-------GEGPGKD-PFRRDQKTPVKNFFLAGSYTKQIVWK 74 (93)
Q Consensus 3 ~~deel~~~v~~eL~~~~P~~~~a~v~~~~Vire~~Atf-------~~~PG~~-~~RP~~~T~~~nLfLAGDwt~t~~pA 74 (93)
++++++++.++++|+++||.. ..+++...+.+..+.-+ ...||.. ..+|..+++++|||+|||++++.||.
T Consensus 353 ~~~~~~~~~~l~~L~~~~~~~-~~~p~~~~~~~W~~~~~~~G~~~~~~~~g~~~~~~~~~~~p~~~l~~aG~~~~~~~~g 431 (453)
T 2yg5_A 353 LSAEERKATILASLARYLGPK-AEEPVVYYESDWGSEEWTRGCYAASFDLGGLHRYGADSRTPVGPIHFSCSDIAAEGYQ 431 (453)
T ss_dssp SCHHHHHHHHHHHHHHHHCGG-GGCCSEEEECCTTTCTTTCSSSCEEECTTHHHHHGGGTTCCBTTEEECCGGGCSTTTT
T ss_pred CCHHHHHHHHHHHHHHHhCcc-CCCccEEEEeecCCCCCCCCCCcCcCCCCccccchHHHhCCcCceEEeeccccccccc
Confidence 578999999999999999852 23444555554332211 2356632 23466788999999999999999999
Q ss_pred ceeccc
Q 034492 75 EQLCLV 80 (93)
Q Consensus 75 t~~~~~ 80 (93)
+|++++
T Consensus 432 ~v~gA~ 437 (453)
T 2yg5_A 432 HVDGAV 437 (453)
T ss_dssp SHHHHH
T ss_pred chHHHH
Confidence 988875
>2z3y_A Lysine-specific histone demethylase 1; chromatin, nucleosome, transcription, LSD1, alternative splicing, chromatin regulator, coiled coil; HET: F2N; 2.25A {Homo sapiens} SCOP: a.4.1.18 c.3.1.2 d.16.1.5 PDB: 2ejr_A* 2z5u_A* 3abt_A* 3abu_A* 2y48_A* 2v1d_A* 2h94_A* 2iw5_A* 2uxn_A* 2uxx_A* 2hko_A* 2dw4_A* 2x0l_A* 2l3d_A
Back Show alignment and structure
Probab=98.17 E-value=1.6e-06 Score=69.66 Aligned_cols=80 Identities=15% Similarity=0.095 Sum_probs=56.2
Q ss_pred CCCHHHHHHHHHHHHHHHCCCCCCCceeeEEEEEeCCce-----ec-CCCCCCC--------------CCCCCCCCCCCE
Q 034492 2 PLPNDEIIRRVAKQVLALFPSSQGLEVIWSSFVKIGQSL-----CG-EGPGKDP--------------FRRDQKTPVKNF 61 (93)
Q Consensus 2 ~~~deel~~~v~~eL~~~~P~~~~a~v~~~~Vire~~At-----f~-~~PG~~~--------------~RP~~~T~~~nL 61 (93)
.++++++++.++.+|+++|+......+....+.+..+.- +. +.||... .||+..++..+|
T Consensus 546 ~lsdee~~~~~l~~L~~~~g~~~~~~p~~~~v~~W~~dp~~~Gsys~~~pg~~~~~~~~l~~p~~~~~~~~~~~~~~grl 625 (662)
T 2z3y_A 546 NISDDVIVGRCLAILKGIFGSSAVPQPKETVVSRWRADPWARGSYSYVAAGSSGNDYDLMAQPITPGPSIPGAPQPIPRL 625 (662)
T ss_dssp TSCHHHHHHHHHHHHHHHHCTTSSCCCSEEEECCTTTCTTTSSSCEECBTTCCTHHHHHHHCCBCC---------CCCCE
T ss_pred hCCHHHHHHHHHHHHHHHhCCcccCCCceeEEEEECCCCCCCcccccCCCCCchhhHHHHhCcCccccccccccCCCCcE
Confidence 578999999999999999986544566677777655542 22 3455421 234456678899
Q ss_pred EEecCccccCcccceecccc
Q 034492 62 FLAGSYTKQIVWKEQLCLVD 81 (93)
Q Consensus 62 fLAGDwt~t~~pAt~~~~~~ 81 (93)
|+||++|+..|+++|++++.
T Consensus 626 ~FAGe~ts~~~~g~v~GAi~ 645 (662)
T 2z3y_A 626 FFAGEHTIRNYPATVHGALL 645 (662)
T ss_dssp EECSGGGCTTSTTSHHHHHH
T ss_pred EEEeccccCCCCcCHHHHHH
Confidence 99999999999999999874
>2xag_A Lysine-specific histone demethylase 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_A* 2xah_A* 2xaj_A* 2xaq_A* 2xas_A* 2com_A
Back Show alignment and structure
Probab=98.10 E-value=4.3e-06 Score=69.79 Aligned_cols=80 Identities=15% Similarity=0.096 Sum_probs=60.0
Q ss_pred CCCHHHHHHHHHHHHHHHCCCCCCCceeeEEEEEeCCc-----eec-CCCCCCC--------------CCCCCCCCCCCE
Q 034492 2 PLPNDEIIRRVAKQVLALFPSSQGLEVIWSSFVKIGQS-----LCG-EGPGKDP--------------FRRDQKTPVKNF 61 (93)
Q Consensus 2 ~~~deel~~~v~~eL~~~~P~~~~a~v~~~~Vire~~A-----tf~-~~PG~~~--------------~RP~~~T~~~nL 61 (93)
.++++++++.++.+|+++|+......+....+.+..+. .|. +.||... .||+..++..+|
T Consensus 717 ~lsdeel~~~~l~~L~~ifG~~~~~~P~~~~vtrW~~dp~s~GsYs~~~pG~~~~~~~~L~~P~~~~~~~p~~~~~~grL 796 (852)
T 2xag_A 717 NISDDVIVGRCLAILKGIFGSSAVPQPKETVVSRWRADPWARGSYSYVAAGSSGNDYDLMAQPITPGPSIPGAPQPIPRL 796 (852)
T ss_dssp GSCHHHHHHHHHHHHHHHHCTTTCCCCSEEEECCTTTCTTTSSSCEECBTTCCTTHHHHTTSCBCCCCSSTTCCCCCCCE
T ss_pred cCCHHHHHHHHHHHHHHHhCccccCCceEEEEEecCCCCCcCccccccCCCcchhhHHHHhCccccccccccccCCCCcE
Confidence 47899999999999999998654456677777776554 222 3456532 134556778899
Q ss_pred EEecCccccCcccceecccc
Q 034492 62 FLAGSYTKQIVWKEQLCLVD 81 (93)
Q Consensus 62 fLAGDwt~t~~pAt~~~~~~ 81 (93)
|+||++|+..|+++|++++.
T Consensus 797 ~FAGE~Ts~~~~gtveGAi~ 816 (852)
T 2xag_A 797 FFAGEHTIRNYPATVHGALL 816 (852)
T ss_dssp EECSGGGCTTSTTSHHHHHH
T ss_pred EEEehhHhCCCCcCHHHHHH
Confidence 99999999999999998874
>2e1m_C L-glutamate oxidase; L-amino acid oxidase, FAD, L-GOX, flavo oxidoreductase; HET: FAD; 2.80A {Streptomyces SP}
Back Show alignment and structure
Probab=98.03 E-value=2.2e-07 Score=64.44 Aligned_cols=77 Identities=10% Similarity=0.003 Sum_probs=53.1
Q ss_pred CCCHHHHHHHHHHHHHHHC-CCCCCCceeeE--EEEEeCCce-----ec-CCCCCCC-CCCCCCCCCCCEEEecCccccC
Q 034492 2 PLPNDEIIRRVAKQVLALF-PSSQGLEVIWS--SFVKIGQSL-----CG-EGPGKDP-FRRDQKTPVKNFFLAGSYTKQI 71 (93)
Q Consensus 2 ~~~deel~~~v~~eL~~~~-P~~~~a~v~~~--~Vire~~At-----f~-~~PG~~~-~RP~~~T~~~nLfLAGDwt~t~ 71 (93)
.++++|+++.++.+|.++| |+. ..+... .+.+..+.- +. +.||.+. .++....+..+||+||++|+.
T Consensus 53 ~l~~~e~~~~~l~~L~~~~g~~~--~~~~~~~~~~~~W~~dp~~~Ga~s~~~pg~~~~~~~~l~~p~grl~FAGe~ts~- 129 (181)
T 2e1m_C 53 SFDDAERYGYALENLQSVHGRRI--EVFYTGAGQTQSWLRDPYACGEAAVYTPHQMTAFHLDVVRPEGPVYFAGEHVSL- 129 (181)
T ss_dssp TSCTTTTHHHHHHHHHHHHCGGG--GGTEEEEEEEEESSSCTTTSSSEECCCTTHHHHHHHHHHSCBTTEEECSGGGTT-
T ss_pred cCCHHHHHHHHHHHHHHHhCCCc--HhhccCcceecccCCCCCCCCcccCcCCCchHHHHHHHhCCCCcEEEEEHHHcC-
Confidence 4788999999999999999 443 334344 444332222 22 4566542 244445677899999999996
Q ss_pred cccceecccc
Q 034492 72 VWKEQLCLVD 81 (93)
Q Consensus 72 ~pAt~~~~~~ 81 (93)
|+.+|++++.
T Consensus 130 ~~g~~eGAl~ 139 (181)
T 2e1m_C 130 KHAWIEGAVE 139 (181)
T ss_dssp STTSHHHHHH
T ss_pred CccCHHHHHH
Confidence 9999999874
>3lov_A Protoporphyrinogen oxidase; structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; HET: FAD; 2.06A {Exiguobacterium sibiricum}
Back Show alignment and structure
Probab=97.99 E-value=8.6e-07 Score=67.07 Aligned_cols=67 Identities=13% Similarity=0.113 Sum_probs=54.3
Q ss_pred CCCHHHHHHHHHHHHHHHCCCCCCCceeeEEEEEeCCceecCCCCCCCC----CCCCCCCCCCEEEecCcccc
Q 034492 2 PLPNDEIIRRVAKQVLALFPSSQGLEVIWSSFVKIGQSLCGEGPGKDPF----RRDQKTPVKNFFLAGSYTKQ 70 (93)
Q Consensus 2 ~~~deel~~~v~~eL~~~~P~~~~a~v~~~~Vire~~Atf~~~PG~~~~----RP~~~T~~~nLfLAGDwt~t 70 (93)
.+++|++++.++++|.++|+.. ..+....+.+.+++.+.+.||.... ++...++++|||+||||+..
T Consensus 374 ~~~~e~~~~~~~~~L~~~~g~~--~~p~~~~v~~w~~a~p~~~~g~~~~~~~~~~~l~~~~~~l~~aG~~~~g 444 (475)
T 3lov_A 374 HESDEVLQQAVLQDLEKICGRT--LEPKQVIISRLMDGLPAYTVGHADRIQRVREEVLAQYPGIYLAGLAYDG 444 (475)
T ss_dssp GSCHHHHHHHHHHHHHHHHSSC--CCCSEEEEEEEEEEEECCCTTHHHHHHHHHHHHHHHSTTEEECSTTTSC
T ss_pred CCCHHHHHHHHHHHHHHHhCCC--CCCeEEEEEEcccCCCCCCCChHHHHHHHHHHHHhhCCCEEEEccCCCC
Confidence 4689999999999999999863 4677889999999999999996322 33344677899999999863
>2vvm_A Monoamine oxidase N; FAD, peroxisome, flavoprotein, oxidoreductase, enantioselectivity, directed evolution variant; HET: FAD; 1.85A {Aspergillus niger} PDB: 2vvl_A* 2vvl_G*
Back Show alignment and structure
Probab=97.94 E-value=5.8e-07 Score=68.47 Aligned_cols=77 Identities=17% Similarity=0.034 Sum_probs=52.6
Q ss_pred CCHHHHHHHHHHHHHHHCCCCCCCceeeEEEEEeCC-----cee-cCCCCCC-CCCCCCCCCCCCEEEecCccccCcccc
Q 034492 3 LPNDEIIRRVAKQVLALFPSSQGLEVIWSSFVKIGQ-----SLC-GEGPGKD-PFRRDQKTPVKNFFLAGSYTKQIVWKE 75 (93)
Q Consensus 3 ~~deel~~~v~~eL~~~~P~~~~a~v~~~~Vire~~-----Atf-~~~PG~~-~~RP~~~T~~~nLfLAGDwt~t~~pAt 75 (93)
++++++++.++++|++++|.. ..+.+..+.+..+ ..+ .+.||.. ..++..+++.+|||+||||+++.|+++
T Consensus 389 ~~~~e~~~~~~~~L~~~~~~~--~~~~~~~~~~W~~dp~~~g~y~~~~~g~~~~~~~~l~~p~~~l~fAGe~t~~~~~g~ 466 (495)
T 2vvm_A 389 IQPDEDVRETLKAVGQLAPGT--FGVKRLVFHNWVKDEFAKGAWFFSRPGMVSECLQGLREKHGGVVFANSDWALGWRSF 466 (495)
T ss_dssp CCTTTCHHHHHHHHHTTSTTS--CCEEEEEECCTTTCTTTSSSSCCCCTTHHHHHHHHHHCCBTTEEECCGGGCSSSTTS
T ss_pred CCCHHHHHHHHHHHHHhcCCC--CCceEEEEeEcCCCCCCCCCccCcCCCcchhhHHHHhCcCCCEEEechhhhcCCceE
Confidence 345677889999999999862 4455554444322 122 2445543 124444567899999999999999999
Q ss_pred eecccc
Q 034492 76 QLCLVD 81 (93)
Q Consensus 76 ~~~~~~ 81 (93)
|++++.
T Consensus 467 veGAi~ 472 (495)
T 2vvm_A 467 IDGAIE 472 (495)
T ss_dssp HHHHHH
T ss_pred EEhHHH
Confidence 998864
>4gut_A Lysine-specific histone demethylase 1B; histone demethylase; HET: FAD PGE; 2.00A {Homo sapiens} PDB: 4gur_A* 4gus_A* 4guu_A* 4fwe_A* 4fwf_A* 4fwj_A* 4gu1_A*
Back Show alignment and structure
Probab=97.89 E-value=9.3e-06 Score=67.03 Aligned_cols=78 Identities=10% Similarity=0.058 Sum_probs=54.3
Q ss_pred CCCHHHHHHHHHHHHHHHCCCCCCCceeeEEEEEeCCceecCCCCCCCC-CCCC--------CCC-CCCEEEecCccccC
Q 034492 2 PLPNDEIIRRVAKQVLALFPSSQGLEVIWSSFVKIGQSLCGEGPGKDPF-RRDQ--------KTP-VKNFFLAGSYTKQI 71 (93)
Q Consensus 2 ~~~deel~~~v~~eL~~~~P~~~~a~v~~~~Vire~~Atf~~~PG~~~~-RP~~--------~T~-~~nLfLAGDwt~t~ 71 (93)
.++++|+++.++++|+++|+......+....+.+..+.-|.. |.+.. .|+. ..+ ..+||+||++|+..
T Consensus 677 ~lsdeel~~~~l~~L~~ifg~~~~~~P~~~~vt~W~~dp~s~--Gsys~~~~g~~~~~~~~L~~p~~grL~FAGE~Ts~~ 754 (776)
T 4gut_A 677 TLDDKQVLQQCMATLRELFKEQEVPDPTKYFVTRWSTDPWIQ--MAYSFVKTGGSGEAYDIIAEDIQGTVFFAGEATNRH 754 (776)
T ss_dssp TSCHHHHHHHHHHHHHHHTTTSCCCCCSEEEECCGGGCTTTC--CSEEEEBTTCCTHHHHHHHCCBTTTEEECSGGGCSS
T ss_pred cCCHHHHHHHHHHHHHHHhCcccccCcceEEEecCCCCCccC--CCCCccCCCCchhHHHHHhCcCCCcEEEEehhhcCC
Confidence 578999999999999999986444456666666544433332 32222 1222 123 37899999999999
Q ss_pred cccceecccc
Q 034492 72 VWKEQLCLVD 81 (93)
Q Consensus 72 ~pAt~~~~~~ 81 (93)
|+++|++|+.
T Consensus 755 ~~gtveGAi~ 764 (776)
T 4gut_A 755 FPQTVTGAYL 764 (776)
T ss_dssp SCSSHHHHHH
T ss_pred CCcCHHHHHH
Confidence 9999999874
>3i6d_A Protoporphyrinogen oxidase; protein-inhibitor complex, cytoplasm, FAD, flavoprotein, oxidoreductase, porphyrin biosynthesis; HET: FAD ACJ; 2.90A {Bacillus subtilis}
Back Show alignment and structure
Probab=97.89 E-value=1.6e-06 Score=64.66 Aligned_cols=66 Identities=14% Similarity=0.176 Sum_probs=53.5
Q ss_pred CCCHHHHHHHHHHHHHHHCCCCCCCceeeEEEEEeCCceecCCCCCCCC----CCCCCCCCCCEEEecCccc
Q 034492 2 PLPNDEIIRRVAKQVLALFPSSQGLEVIWSSFVKIGQSLCGEGPGKDPF----RRDQKTPVKNFFLAGSYTK 69 (93)
Q Consensus 2 ~~~deel~~~v~~eL~~~~P~~~~a~v~~~~Vire~~Atf~~~PG~~~~----RP~~~T~~~nLfLAGDwt~ 69 (93)
.++++++++.++++|.++|+.. ..+....+.+.+++.+.+.+|.... ++...++++|||+||||+.
T Consensus 377 ~~~~~~~~~~~~~~l~~~~g~~--~~p~~~~~~~w~~a~p~~~~g~~~~~~~~~~~l~~~~~~l~~aG~~~~ 446 (470)
T 3i6d_A 377 DLSDNDIINIVLEDLKKVMNIN--GEPEMTCVTRWHESMPQYHVGHKQRIKELREALASAYPGVYMTGASFE 446 (470)
T ss_dssp TSCHHHHHHHHHHHHGGGSCCC--SCCSEEEEEEEEEEEEECBTTHHHHHHHHHHHHHHHSTTEEECSTTTS
T ss_pred CCCHHHHHHHHHHHHHHHhCCC--CCceEEEEEEcCCccCCCCCCHHHHHHHHHHHHHhhCCCEEEEeecCC
Confidence 4789999999999999999863 5677788999999999999986422 3334456789999999875
>1sez_A Protoporphyrinogen oxidase, mitochondrial; FAD-binding, para-hydroxy-benzoate-hydroxylase fold (PHBH- fold), monotopic membrane-binding domain; HET: FAD OMN TON; 2.90A {Nicotiana tabacum} SCOP: c.3.1.2 d.16.1.5
Back Show alignment and structure
Probab=97.75 E-value=2.6e-06 Score=64.87 Aligned_cols=66 Identities=14% Similarity=0.144 Sum_probs=52.2
Q ss_pred CCCHHHHHHHHHHHHHHHCCCCCCCceeeEEEEEeCCceecCCCCCCCCCC---CCCCCCCCEEEecCccc
Q 034492 2 PLPNDEIIRRVAKQVLALFPSSQGLEVIWSSFVKIGQSLCGEGPGKDPFRR---DQKTPVKNFFLAGSYTK 69 (93)
Q Consensus 2 ~~~deel~~~v~~eL~~~~P~~~~a~v~~~~Vire~~Atf~~~PG~~~~RP---~~~T~~~nLfLAGDwt~ 69 (93)
.++++|+++.++++|+++++.. ..+....+.+.+++.+.+.+|....++ ...++++|||+||||+.
T Consensus 403 ~~~~ee~~~~v~~~L~~~~g~~--~~p~~~~~~~w~~~~p~~~~g~~~~~~~~~~~~~~~~~l~~aG~~~~ 471 (504)
T 1sez_A 403 KASRTELKEIVTSDLKQLLGAE--GEPTYVNHLYWSKAFPLYGHNYDSVLDAIDKMEKNLPGLFYAGNHRG 471 (504)
T ss_dssp TCCHHHHHHHHHHHHHHHHCBC--SCCSSEEEEEEEEEEECCCTTHHHHHHHHHHHHHHSTTEEECCSSSS
T ss_pred CCCHHHHHHHHHHHHHHHhCCC--CCCeEEEEeECCCCCCccCcCHHHHHHHHHHHHHhCCCEEEEeecCC
Confidence 4689999999999999999863 456677888888888888888643322 23467899999999987
>3nks_A Protoporphyrinogen oxidase; FAD containing protein, PPO, variegate porphyria disease, VP oxidoreductase-oxidoreductase inhibitor complex; HET: ACJ FAD; 1.90A {Homo sapiens}
Back Show alignment and structure
Probab=97.74 E-value=3.6e-06 Score=63.39 Aligned_cols=66 Identities=9% Similarity=-0.067 Sum_probs=51.6
Q ss_pred CCCHHHHHHHHHHHHHHHCCCCCCCceeeEEEEEeCCceecCCCCCCCCCCCCC----CCCCCEEEecCccc
Q 034492 2 PLPNDEIIRRVAKQVLALFPSSQGLEVIWSSFVKIGQSLCGEGPGKDPFRRDQK----TPVKNFFLAGSYTK 69 (93)
Q Consensus 2 ~~~deel~~~v~~eL~~~~P~~~~a~v~~~~Vire~~Atf~~~PG~~~~RP~~~----T~~~nLfLAGDwt~ 69 (93)
.++++++++.++++|.++++.. ..+...+|.+.++|.+.+.+|....+.... ...+|||+||||..
T Consensus 383 ~~~~~~~~~~~~~~L~~~~g~~--~~~~~~~v~rw~~a~p~~~~g~~~~~~~~~~~l~~~~~~l~l~G~~~~ 452 (477)
T 3nks_A 383 VLSQELFQQRAQEAAATQLGLK--EMPSHCLVHLHKNCIPQYTLGHWQKLESARQFLTAHRLPLTLAGASYE 452 (477)
T ss_dssp CCCHHHHHHHHHHHHHHHHCCC--SCCSEEEEEEEEEEEECCBTTHHHHHHHHHHHHHHTTCSEEECSTTTS
T ss_pred CCCHHHHHHHHHHHHHHHhCCC--CCCcEEEEEEcCCccCCCCCCHHHHHHHHHHHHHhcCCCEEEEccCCC
Confidence 3689999999999999999753 456788999999999999999754322211 22468999999974
>4dgk_A Phytoene dehydrogenase; the FAD/NAD(P)-binding rossmann fold, oxidoreductase; 2.35A {Pantoea ananatis}
Back Show alignment and structure
Probab=97.64 E-value=3.2e-05 Score=58.62 Aligned_cols=65 Identities=15% Similarity=0.230 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHHHH-CCCCCCCceeeEEEEE----e------CCceecCCCC---CCCCCCCCC-CCCCCEEEecCccc
Q 034492 5 NDEIIRRVAKQVLAL-FPSSQGLEVIWSSFVK----I------GQSLCGEGPG---KDPFRRDQK-TPVKNFFLAGSYTK 69 (93)
Q Consensus 5 deel~~~v~~eL~~~-~P~~~~a~v~~~~Vir----e------~~Atf~~~PG---~~~~RP~~~-T~~~nLfLAGDwt~ 69 (93)
.+++.++++++|.+. +|... ..|+..++.. + .-+.|...+. ....||.++ |+++|||||||||.
T Consensus 390 ~~~~~~~vl~~l~~~~~P~~~-~~i~~~~~~tP~~~~~~~~~~~G~~~g~~~~~~q~~~~RP~~~~t~i~gLyl~G~~t~ 468 (501)
T 4dgk_A 390 GPKLRDRIFAYLEQHYMPGLR-SQLVTHRMFTPFDFRDQLNAYHGSAFSVEPVLTQSAWFRPHNRDKTITNLYLVGAGTH 468 (501)
T ss_dssp HHHHHHHHHHHHHHHTCTTHH-HHEEEEEEECTTTTC------------------------------CCTTEEECCCH--
T ss_pred HHHHHHHHHHHHHHhhCCChH-HceEEEEECCHHHHHHHcCCCCccccChhcchhhccccCCCCCCCCCCCEEEECCCCC
Confidence 467788899999864 58653 4455555542 0 1122222222 122588664 89999999999997
Q ss_pred c
Q 034492 70 Q 70 (93)
Q Consensus 70 t 70 (93)
.
T Consensus 469 p 469 (501)
T 4dgk_A 469 P 469 (501)
T ss_dssp -
T ss_pred C
Confidence 4
>2jae_A L-amino acid oxidase; oxidoreductase, dimerisation mode, hydride transfer mechanism, GR2-family, flavoenzyme, FAD containing; HET: FAD; 1.25A {Rhodococcus opacus} PDB: 2jb1_A* 2jb2_A* 2jb3_A*
Back Show alignment and structure
Probab=97.56 E-value=2.1e-05 Score=59.72 Aligned_cols=78 Identities=13% Similarity=0.091 Sum_probs=51.0
Q ss_pred CCCHHHHHHHHHHHHHHHCCCCCCCceeeEEEEEeCCceecCC------------CCCC-CCCCCCCCCCCCEEEecCcc
Q 034492 2 PLPNDEIIRRVAKQVLALFPSSQGLEVIWSSFVKIGQSLCGEG------------PGKD-PFRRDQKTPVKNFFLAGSYT 68 (93)
Q Consensus 2 ~~~deel~~~v~~eL~~~~P~~~~a~v~~~~Vire~~Atf~~~------------PG~~-~~RP~~~T~~~nLfLAGDwt 68 (93)
.++++++++.++++|.+++|......+....+.+..+..+... ||.. ..++..+++.+|||+||+++
T Consensus 381 ~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~W~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~faG~~~ 460 (489)
T 2jae_A 381 SLTHRQRLAKAIAEGSEIHGEKYTRDISSSFSGSWRRTKYSESAWANWAGSGGSHGGAATPEYEKLLEPVDKIYFAGDHL 460 (489)
T ss_dssp TSCHHHHHHHHHHHHHHHHCGGGGSSEEEEEEEEGGGSTTTSCSSCEETTC-------CCHHHHHHTSCBTTEEECSGGG
T ss_pred cCCHHHHHHHHHHHHHHHcCcchhhhccccEEEEcCCCCCCCCcchhcccccCCCcccchhhHHHHhCCCCcEEEeEHHh
Confidence 4689999999999999999851124455555555555443211 3321 11334467889999999999
Q ss_pred ccCcccceeccc
Q 034492 69 KQIVWKEQLCLV 80 (93)
Q Consensus 69 ~t~~pAt~~~~~ 80 (93)
.. ++.+|.+++
T Consensus 461 ~~-~~~~v~gAi 471 (489)
T 2jae_A 461 SN-AIAWQHGAL 471 (489)
T ss_dssp BS-STTSHHHHH
T ss_pred cc-CccHHHHHH
Confidence 74 777777654
>2ivd_A PPO, PPOX, protoporphyrinogen oxidase; porphyrin biosynthesis, chlorophyll biosynthesis, oxidoreductase, HAEM biosynthesis, heme biosynthesis; HET: ACJ FAD TWN; 2.3A {Myxococcus xanthus} SCOP: c.3.1.2 d.16.1.5 PDB: 2ive_A*
Back Show alignment and structure
Probab=97.29 E-value=6.5e-05 Score=56.62 Aligned_cols=65 Identities=11% Similarity=0.060 Sum_probs=48.9
Q ss_pred CCCHHHHHHHHHHHHHHHCCCCCCCceeeEEEEEeCCceecCCCCCCCC----CCCCCCCCCCEEEecCccc
Q 034492 2 PLPNDEIIRRVAKQVLALFPSSQGLEVIWSSFVKIGQSLCGEGPGKDPF----RRDQKTPVKNFFLAGSYTK 69 (93)
Q Consensus 2 ~~~deel~~~v~~eL~~~~P~~~~a~v~~~~Vire~~Atf~~~PG~~~~----RP~~~T~~~nLfLAGDwt~ 69 (93)
.++++++++.++++|.+++|.. ..+...++.+.+++.+.+.||.... ++...+ ++|||+||||+.
T Consensus 383 ~~~~~~~~~~~~~~l~~~~~~~--~~p~~~~~~~w~~~~p~~~~g~~~~~~~~~~~~~~-~~~l~~aG~~~~ 451 (478)
T 2ivd_A 383 EQDEDALAALAREELKALAGVT--ARPSFTRVFRWPLGIPQYNLGHLERVAAIDAALQR-LPGLHLIGNAYK 451 (478)
T ss_dssp GSCHHHHHHHHHHHHHHHHCCC--SCCSEEEEEEESSCCBCCBTTHHHHHHHHHHHHHT-STTEEECSTTTS
T ss_pred CCCHHHHHHHHHHHHHHHhCCC--CCCcEEEEEECCCcccCCCcCHHHHHHHHHHHHhh-CCCEEEEccCCC
Confidence 3678999999999999999864 3566677888888877788886322 112223 789999999983
>4gde_A UDP-galactopyranose mutase; flavin adenine dinucleotide binding, nucleotide binding, MUT isomerase; HET: FDA; 2.20A {Aspergillus fumigatus} PDB: 3ute_A* 3utg_A* 3uth_A* 4gdc_A* 4gdd_A* 3utf_A* 3ukh_A* 3ukf_A* 3uka_A* 3ukl_A* 3ukk_A* 3ukq_A* 3ukp_A*
Back Show alignment and structure
Probab=97.00 E-value=0.00011 Score=55.42 Aligned_cols=74 Identities=8% Similarity=0.052 Sum_probs=58.6
Q ss_pred CCCHHHHHHHHHHHHHHHCCCCCCCceeeEEEEEeCCceecCCCCCCCC----CCCCCCCCCCEEEecCccccCcc-cce
Q 034492 2 PLPNDEIIRRVAKQVLALFPSSQGLEVIWSSFVKIGQSLCGEGPGKDPF----RRDQKTPVKNFFLAGSYTKQIVW-KEQ 76 (93)
Q Consensus 2 ~~~deel~~~v~~eL~~~~P~~~~a~v~~~~Vire~~Atf~~~PG~~~~----RP~~~T~~~nLfLAGDwt~t~~p-At~ 76 (93)
.+++|+|++.+.++|.++.+......++..+|.|.++|-+.+..|.... ++..+. +|||++|-+-.-.|. .+|
T Consensus 384 ~~~de~l~~~~~~~L~~~~~i~~~~~i~~~~v~r~~~ayP~y~~~~~~~~~~~~~~l~~--~~l~~~GR~g~~~Y~~~n~ 461 (513)
T 4gde_A 384 PVNQETILADCIQGLVNTEMLKPTDEIVSTYHRRFDHGYPTPTLEREGTLTQILPKLQD--KDIWSRGRFGSWRYEVGNQ 461 (513)
T ss_dssp CCCTTTHHHHHHHHHHHTTSSCTTCEEEEEEEEEEEEEEECCBTTHHHHHHHHHHHHHH--TTEEECSTTTTCCGGGCSH
T ss_pred CCCHHHHHHHHHHHHHHhcCCCCccceEEEEEEECCCeecccCHhHHHHHHHHHHHHhh--cCcEEecCCcccCcCCCCH
Confidence 4789999999999999999876667899999999999999999987543 333333 699999976655665 455
Q ss_pred e
Q 034492 77 L 77 (93)
Q Consensus 77 ~ 77 (93)
.
T Consensus 462 D 462 (513)
T 4gde_A 462 D 462 (513)
T ss_dssp H
T ss_pred H
Confidence 4
>3k7m_X 6-hydroxy-L-nicotine oxidase; enantiomeric substrates, flavoenzymes, nicotine degradation, oxidoreductase; HET: FAD GP7; 1.95A {Arthrobacter nicotinovorans} PDB: 3k7q_X* 3ng7_X* 3ngc_X* 3nh3_X* 3nho_X* 3nk0_X* 3nk1_X* 3nk2_X* 3nn0_X* 3nn6_X* 3k7t_A*
Back Show alignment and structure
Probab=96.51 E-value=0.0017 Score=48.04 Aligned_cols=68 Identities=15% Similarity=0.104 Sum_probs=46.7
Q ss_pred HHHHHHHHHCCCCCCCceeeEEEEEeCC------ceecCCCCCC-CCCCCCCCCCCCEEEecCccccCcccceecccc
Q 034492 11 RVAKQVLALFPSSQGLEVIWSSFVKIGQ------SLCGEGPGKD-PFRRDQKTPVKNFFLAGSYTKQIVWKEQLCLVD 81 (93)
Q Consensus 11 ~v~~eL~~~~P~~~~a~v~~~~Vire~~------Atf~~~PG~~-~~RP~~~T~~~nLfLAGDwt~t~~pAt~~~~~~ 81 (93)
++.+.|++++|+. .++...+.+... +-..+.||.. ..+|..+.|..+||+||..|++.|+.+|++++.
T Consensus 339 ~~~~~l~~~~~~~---~~~~~~~~~W~~d~~~~G~~~~~~~g~~~~~~~~l~~p~g~~~fAGe~t~~~~~g~~~GA~~ 413 (431)
T 3k7m_X 339 AVKDAVLYYLPEV---EVLGIDYHDWIADPLFEGPWVAPRVGQFSRVHKELGEPAGRIHFVGSDVSLEFPGYIEGALE 413 (431)
T ss_dssp HHHHHHHHHCTTC---EEEEEECCCTTTCTTTSSSSCCCCTTTTTTSSGGGGSCBTTEEECSGGGCSSSTTSHHHHHH
T ss_pred HHHHHHHHhcCCC---CccEeEecccCCCCCCCCCCCCcCCCCCcccHHHHhCCCCcEEEEehhhhccCCeEehHHHH
Confidence 4667889999863 243333333211 2222467763 456777788899999999999999999999874
>2iid_A L-amino-acid oxidase; flavoenzyme, FAD binding domain, reaction mechanism, sustrat binding, oxidoreductase; HET: NAG FUC PHE FAD; 1.80A {Calloselasma rhodostoma} SCOP: c.3.1.2 d.16.1.5 PDB: 1f8s_A* 1f8r_A* 1reo_A* 1tdk_A* 1tdn_A* 1tdo_A* 3kve_A* 4e0v_A*
Back Show alignment and structure
Probab=96.49 E-value=0.00015 Score=55.19 Aligned_cols=77 Identities=14% Similarity=0.052 Sum_probs=47.2
Q ss_pred CCCHHHHHHHHHHHHHHHCCCCCCCc----eeeEEEEEeCCcee------cCCCCCCC-CCCCCCCCCCCEEEecCcccc
Q 034492 2 PLPNDEIIRRVAKQVLALFPSSQGLE----VIWSSFVKIGQSLC------GEGPGKDP-FRRDQKTPVKNFFLAGSYTKQ 70 (93)
Q Consensus 2 ~~~deel~~~v~~eL~~~~P~~~~a~----v~~~~Vire~~Atf------~~~PG~~~-~RP~~~T~~~nLfLAGDwt~t 70 (93)
.++++++++.++++|.++++... .. .....+.+..+..+ ...||... .++...++.+|||+||+++..
T Consensus 383 ~~~~~~~~~~~l~~L~~~~g~~~-~~~~~~~~~~~~~~W~~~p~~~G~~~~~~~~~~~~~~~~l~~p~~~l~fAGe~t~~ 461 (498)
T 2iid_A 383 ALDFKDCADIVFNDLSLIHQLPK-KDIQSFCYPSVIQKWSLDKYAMGGITTFTPYQFQHFSDPLTASQGRIYFAGEYTAQ 461 (498)
T ss_dssp TSCHHHHHHHHHHHHHHHHTCCH-HHHHHHEEEEEEEEGGGCTTTCSSEECCCTTHHHHHHHHHHCCBTTEEECSGGGSS
T ss_pred cCCHHHHHHHHHHHHHHHcCCCh-hhhhhhcCccEEEecCCCCCCCceeeecCCcchHHHHHHHhCCCCcEEEEEccccc
Confidence 47899999999999999997321 11 12233444333222 12333221 133345678999999999976
Q ss_pred Ccccceeccc
Q 034492 71 IVWKEQLCLV 80 (93)
Q Consensus 71 ~~pAt~~~~~ 80 (93)
.+ .+|++++
T Consensus 462 ~~-g~~~GAi 470 (498)
T 2iid_A 462 AH-GWIDSTI 470 (498)
T ss_dssp SS-SCHHHHH
T ss_pred CC-cCHHHHH
Confidence 54 6777655
>1rsg_A FMS1 protein; FAD binding motif, oxidoreductase; HET: FAD; 1.90A {Saccharomyces cerevisiae} PDB: 1z6l_A* 3bi2_A* 3bi4_A* 3bi5_A* 3bnm_B* 3bnu_B* 3cn8_B* 3cnd_B* 3cnp_B* 3cns_A* 3cnt_B* 1yy5_A* 1xpq_A*
Back Show alignment and structure
Probab=95.57 E-value=0.018 Score=44.20 Aligned_cols=25 Identities=12% Similarity=-0.191 Sum_probs=22.4
Q ss_pred CCCCEEEecCccccCcccceecccc
Q 034492 57 PVKNFFLAGSYTKQIVWKEQLCLVD 81 (93)
Q Consensus 57 ~~~nLfLAGDwt~t~~pAt~~~~~~ 81 (93)
+..+||+||+.|+..|+++|++|+.
T Consensus 470 ~~~rl~FAGe~ts~~~~g~v~GA~~ 494 (516)
T 1rsg_A 470 QDSRIRFAGEHTIMDGAGCAYGAWE 494 (516)
T ss_dssp SSSSEEECSTTSCSTTBTSHHHHHH
T ss_pred CCCcEEEeccccccCCCccchhHHH
Confidence 5678999999999999999999874
>4dsg_A UDP-galactopyranose mutase; rossmann fold, flavin adenine dinucleotide, isomerase; HET: FAD UDP; 2.25A {Trypanosoma cruzi} PDB: 4dsh_A*
Back Show alignment and structure
Probab=95.16 E-value=0.0018 Score=49.94 Aligned_cols=69 Identities=10% Similarity=0.054 Sum_probs=50.5
Q ss_pred CCCHHHHHHHHHHHHHHHCCCCCCCceeeEEEEEeCCceecCCCCCCCC----CCCCCCCCCCEEEecCccccCc
Q 034492 2 PLPNDEIIRRVAKQVLALFPSSQGLEVIWSSFVKIGQSLCGEGPGKDPF----RRDQKTPVKNFFLAGSYTKQIV 72 (93)
Q Consensus 2 ~~~deel~~~v~~eL~~~~P~~~~a~v~~~~Vire~~Atf~~~PG~~~~----RP~~~T~~~nLfLAGDwt~t~~ 72 (93)
.+++|||++.+.++|.++..-.....+....|.|.+.+-+.+.+|.... |..... . ||+++|.+-.-.|
T Consensus 360 ~~~d~~l~~~a~~~L~~~~~~~~~~~~~~~~v~r~~~~yP~y~~~~~~~~~~~~~~l~~-~-~l~~~Gr~g~~~y 432 (484)
T 4dsg_A 360 PVNHSTLIEDCIVGCLASNLLLPEDLLVSKWHYRIEKGYPTPFIGRNNLLEKAQPELMS-R-CIYSRGRFGAWRY 432 (484)
T ss_dssp CCCTTSHHHHHHHHHHHTTSCCTTCCEEEEEEEEEEEEEECCBTTHHHHHHHHHHHHHH-T-TEEECSTTTTCCG
T ss_pred cCCHHHHHHHHHHHHHHcCCCCccceEEEEEEEEeCccccCCCccHHHHHHHHHHHHHh-C-CcEeecCCccccc
Confidence 4689999999999999986432224566678999999999999996533 232222 3 9999999665555
>2b9w_A Putative aminooxidase; isomerase, conjugated linoleic acid, FAD; HET: FAD 12P; 1.95A {Propionibacterium acnes} PDB: 2b9x_A* 2b9y_A* 2ba9_A* 2bab_A* 2bac_A*
Back Show alignment and structure
Probab=94.65 E-value=0.0043 Score=45.90 Aligned_cols=70 Identities=11% Similarity=-0.061 Sum_probs=40.2
Q ss_pred CCCHHHHHHHHHHHHHHHCCCCCCCceeeEEEEEeCCceecCC-----CCCCCCCCCCCCCCCCEEEecCccccCcccce
Q 034492 2 PLPNDEIIRRVAKQVLALFPSSQGLEVIWSSFVKIGQSLCGEG-----PGKDPFRRDQKTPVKNFFLAGSYTKQIVWKEQ 76 (93)
Q Consensus 2 ~~~deel~~~v~~eL~~~~P~~~~a~v~~~~Vire~~Atf~~~-----PG~~~~RP~~~T~~~nLfLAGDwt~t~~pAt~ 76 (93)
.++++++.+.+.++|.++.+.. ..+.... ... ..+.+. .|.. .++....+.+|||+||+|+..++ |
T Consensus 338 ~~~~~~~~~~v~~~l~~l~~~~--~~~~~~~-~w~--~~p~~~~~~~~~G~~-~~~~~~~~~~~l~~aG~~~~~g~---~ 408 (424)
T 2b9w_A 338 DKTQEECRQMVLDDMETFGHPV--EKIIEEQ-TWY--YFPHVSSEDYKAGWY-EKVEGMQGRRNTFYAGEIMSFGN---F 408 (424)
T ss_dssp CCCHHHHHHHHHHHHHHTTCCE--EEEEEEE-EEE--EEEECCHHHHHTTHH-HHHHHTTTGGGEEECSGGGSCSS---H
T ss_pred ccChHHHHHHHHHHHHHcCCcc--ccccccc-cee--eeeccCHHHHhccHH-HHHHHHhCCCCceEecccccccc---H
Confidence 4678999999999999854421 2222111 111 112111 1221 23334456789999999998654 6
Q ss_pred eccc
Q 034492 77 LCLV 80 (93)
Q Consensus 77 ~~~~ 80 (93)
+|++
T Consensus 409 e~a~ 412 (424)
T 2b9w_A 409 DEVC 412 (424)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7664
>3kkj_A Amine oxidase, flavin-containing; oxidoreductase, PSR10, Q888A4, X-RAY, structure, PSI, protein structure initiative; HET: FAD; 2.50A {Pseudomonas syringae PV}
Back Show alignment and structure
Probab=94.03 E-value=0.22 Score=31.83 Aligned_cols=61 Identities=7% Similarity=0.038 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHHHHCCCCCCCceeeEEEEEeCCceecCCCCCCCCCCCCCCCCCCEEEecCcccc
Q 034492 5 NDEIIRRVAKQVLALFPSSQGLEVIWSSFVKIGQSLCGEGPGKDPFRRDQKTPVKNFFLAGSYTKQ 70 (93)
Q Consensus 5 deel~~~v~~eL~~~~P~~~~a~v~~~~Vire~~Atf~~~PG~~~~RP~~~T~~~nLfLAGDwt~t 70 (93)
..+..+.....+...+... ...+....+.+.+.+...... ..+...+..+|+||||||+..
T Consensus 246 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~w~~a~~~~~~----~~~~~~~~~~~v~l~GDa~~g 306 (336)
T 3kkj_A 246 REQVIEHLHGAFAELIDCT-MPAPVFSLAHRWLYARPAGAH----EWGALSDADLGIYVCGDWCLS 306 (336)
T ss_dssp HHHHHHHHHHHHHTTCSSC-CCCCSEEEEEEEEEEEESSCC----CCSSEEETTTTEEECCGGGTT
T ss_pred chhhhhhhhhhhhhhccCC-cCcchheeccceeeccccccc----CccceeeCCCCEEEEecccCC
Confidence 3444555555566555432 244555566665555444322 123334677899999999753
Homologous Structure Domains
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
ID Alignment Graph Length
Definition
Probability Query 93
d2dw4a2 449
Lysine-specific histone demethylase 1, LSD1 {Human
98.25 d1b5qa1 347
Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]}
95.18 d2ivda2 108
Protoporphyrinogen oxidase {Myxococcus xanthus [Ta
94.79 d1seza2 112
Protoporphyrinogen oxidase {Tobacco (Nicotiana tab
94.44 d1seza1 373
Protoporphyrinogen oxidase {Tobacco (Nicotiana tab
89.33 d2v5za2 112
Monoamine oxidase B {Human (Homo sapiens) [TaxId:
88.71 d1b5qa2 112
Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]}
88.09 d2dw4a3 109
Lysine-specific histone demethylase 1, LSD1 {Human
87.27
>d2dw4a2 c.3.1.2 (A:274-654,A:764-831) Lysine-specific histone demethylase 1, LSD1 {Human (Homo sapiens) [TaxId: 9606]}
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class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Lysine-specific histone demethylase 1, LSD1
species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.25 E-value=9.3e-08 Score=63.15 Aligned_cols=41 Identities=15% Similarity=0.071 Sum_probs=27.3
Q ss_pred ecCCCCCCCCCCCCCCCCCCEEEecCccccCcccceecccc
Q 034492 41 CGEGPGKDPFRRDQKTPVKNFFLAGSYTKQIVWKEQLCLVD 81 (93)
Q Consensus 41 f~~~PG~~~~RP~~~T~~~nLfLAGDwt~t~~pAt~~~~~~ 81 (93)
+..+++....+|..+++++|||+|||||+++||++|++|+.
T Consensus 394 ~~~p~~~~~~~~~~~~~~~~l~fAGe~t~~~~~g~~~GA~~ 434 (449)
T d2dw4a2 394 MAQPITPGPSIPGAPQPIPRLFFAGEHTIRNYPATVHGALL 434 (449)
T ss_dssp HHCCBCC---------CCCCEEECSGGGCTTSCSSHHHHHH
T ss_pred hcCCccccccchhhcCCCCCEEEEcCCcCCCCceehHHHHH
Confidence 34556677789999999999999999999999999998763
>d1b5qa1 c.3.1.2 (A:5-293,A:406-463) Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]}
Back Show information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Polyamine oxidase
species: Maize (Zea mays) [TaxId: 4577]
Probab=95.18 E-value=0.0025 Score=39.63 Aligned_cols=26 Identities=15% Similarity=0.153 Sum_probs=22.0
Q ss_pred CCCCCCEEEecCccccCcccceeccc
Q 034492 55 KTPVKNFFLAGSYTKQIVWKEQLCLV 80 (93)
Q Consensus 55 ~T~~~nLfLAGDwt~t~~pAt~~~~~ 80 (93)
+++.+|+|+|||+++..+|.+++++.
T Consensus 303 ~~~~~~v~~~GD~~~~~~~~~~~gA~ 328 (347)
T d1b5qa1 303 RAPVGRVYFTGEHTSEHYNGYVHGAY 328 (347)
T ss_dssp HCCBTTEEECSGGGCSSCTTSHHHHH
T ss_pred ccccCCEEEEEccccCcCCCHHHHHH
Confidence 46789999999999999998887753
>d2ivda2 d.16.1.5 (A:307-414) Protoporphyrinogen oxidase {Myxococcus xanthus [TaxId: 34]}
Back Show information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: FAD-linked reductases, C-terminal domain
superfamily: FAD-linked reductases, C-terminal domain
family: L-aminoacid/polyamine oxidase
domain: Protoporphyrinogen oxidase
species: Myxococcus xanthus [TaxId: 34]
Probab=94.79 E-value=0.02 Score=34.84 Aligned_cols=38 Identities=8% Similarity=0.051 Sum_probs=32.1
Q ss_pred CCCHHHHHHHHHHHHHHHCCCCCCCceeeEEEEEeCCcee
Q 034492 2 PLPNDEIIRRVAKQVLALFPSSQGLEVIWSSFVKIGQSLC 41 (93)
Q Consensus 2 ~~~deel~~~v~~eL~~~~P~~~~a~v~~~~Vire~~Atf 41 (93)
.++||+|++.+.++|++++.-. +.+...+|.|.++|.+
T Consensus 70 ~~~d~~l~~~a~~dL~~~lgi~--~~P~~~~v~rw~~aiP 107 (108)
T d2ivda2 70 EQDEDALAALAREELKALAGVT--ARPSFTRVFRWPLGIP 107 (108)
T ss_dssp GSCHHHHHHHHHHHHHHHHCCC--SCCSEEEEEEESSCCB
T ss_pred cCCHHHHHHHHHHHHHHHhCCC--CCCcEEEeeECCCCcC
Confidence 5789999999999999999753 5677889999888753
>d1seza2 d.16.1.5 (A:330-441) Protoporphyrinogen oxidase {Tobacco (Nicotiana tabacum) [TaxId: 4097]}
Back Show information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: FAD-linked reductases, C-terminal domain
superfamily: FAD-linked reductases, C-terminal domain
family: L-aminoacid/polyamine oxidase
domain: Protoporphyrinogen oxidase
species: Tobacco (Nicotiana tabacum) [TaxId: 4097]
Probab=94.44 E-value=0.022 Score=34.87 Aligned_cols=39 Identities=10% Similarity=0.098 Sum_probs=32.7
Q ss_pred CCCCHHHHHHHHHHHHHHHCCCCCCCceeeEEEEEeCCcee
Q 034492 1 MPLPNDEIIRRVAKQVLALFPSSQGLEVIWSSFVKIGQSLC 41 (93)
Q Consensus 1 ~~~~deel~~~v~~eL~~~~P~~~~a~v~~~~Vire~~Atf 41 (93)
++++||+|++.+.++|++++.-. +++...+|.|.++|.+
T Consensus 73 ~~~~d~~l~~~a~~dl~~~lgi~--~~P~~~~v~rw~~aiP 111 (112)
T d1seza2 73 AKASRTELKEIVTSDLKQLLGAE--GEPTYVNHLYWSKAFP 111 (112)
T ss_dssp TTCCHHHHHHHHHHHHHHHHCBC--SCCSSEEEEEEEEEEE
T ss_pred ccCCHHHHHHHHHHHHHHHhCCC--CCccEEEEEECCcccC
Confidence 36789999999999999999753 5677788999888765
>d1seza1 c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen oxidase {Tobacco (Nicotiana tabacum) [TaxId: 4097]}
Back Show information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Tobacco (Nicotiana tabacum) [TaxId: 4097]
Probab=89.33 E-value=0.038 Score=34.95 Aligned_cols=15 Identities=20% Similarity=0.388 Sum_probs=12.9
Q ss_pred CCCCCCEEEecCccc
Q 034492 55 KTPVKNFFLAGSYTK 69 (93)
Q Consensus 55 ~T~~~nLfLAGDwt~ 69 (93)
.|++||||+||||+.
T Consensus 333 ~t~~pglf~aGd~~~ 347 (373)
T d1seza1 333 EKNLPGLFYAGNHRG 347 (373)
T ss_dssp HHHSTTEEECCSSSS
T ss_pred CCCCCCEEEEecCCC
Confidence 467899999999975
>d2v5za2 d.16.1.5 (A:290-401) Monoamine oxidase B {Human (Homo sapiens) [TaxId: 9606]}
Back Show information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: FAD-linked reductases, C-terminal domain
superfamily: FAD-linked reductases, C-terminal domain
family: L-aminoacid/polyamine oxidase
domain: Monoamine oxidase B
species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.71 E-value=0.19 Score=29.07 Aligned_cols=35 Identities=14% Similarity=0.189 Sum_probs=26.2
Q ss_pred CCCHHHHHHHHHHHHHHHCCCCCCCceeeEEEEEe
Q 034492 2 PLPNDEIIRRVAKQVLALFPSSQGLEVIWSSFVKI 36 (93)
Q Consensus 2 ~~~deel~~~v~~eL~~~~P~~~~a~v~~~~Vire 36 (93)
.++++|+++.++++|+++|+......+....+.+.
T Consensus 65 ~ls~~e~~~~~l~~L~~~~g~~~~~~~~~~~~~~W 99 (112)
T d2v5za2 65 RLTKEERLKKLCELYAKVLGSLEALEPVHYEEKNW 99 (112)
T ss_dssp TSCHHHHHHHHHHHHHHHHTCGGGGCCSEEEEEEG
T ss_pred hCCHHHHHHHHHHHHHHHhCccccCCccEEEEccc
Confidence 57999999999999999998643344555555543
>d1b5qa2 d.16.1.5 (A:294-405) Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]}
Back Show information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: FAD-linked reductases, C-terminal domain
superfamily: FAD-linked reductases, C-terminal domain
family: L-aminoacid/polyamine oxidase
domain: Polyamine oxidase
species: Maize (Zea mays) [TaxId: 4577]
Probab=88.09 E-value=0.27 Score=28.22 Aligned_cols=31 Identities=6% Similarity=0.112 Sum_probs=23.9
Q ss_pred CCCHHHHHHHHHHHHHHHCCCCCCCceeeEE
Q 034492 2 PLPNDEIIRRVAKQVLALFPSSQGLEVIWSS 32 (93)
Q Consensus 2 ~~~deel~~~v~~eL~~~~P~~~~a~v~~~~ 32 (93)
.++++++++.++.+|+++|+......+....
T Consensus 66 ~l~~~~~~~~~l~~L~~~~~~~~~~~~~~~~ 96 (112)
T d1b5qa2 66 QQSDEQTKAEIMQVLRKMFPGKDVPDATDIL 96 (112)
T ss_dssp TSCHHHHHHHHHHHHHHHCTTSCCCCCSEEE
T ss_pred hCCHHHHHHHHHHHHHHHhCcccccCCCEEE
Confidence 4789999999999999999864444454433
>d2dw4a3 d.16.1.5 (A:655-763) Lysine-specific histone demethylase 1, LSD1 {Human (Homo sapiens) [TaxId: 9606]}
Back Show information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: FAD-linked reductases, C-terminal domain
superfamily: FAD-linked reductases, C-terminal domain
family: L-aminoacid/polyamine oxidase
domain: Lysine-specific histone demethylase 1, LSD1
species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.27 E-value=0.34 Score=27.52 Aligned_cols=32 Identities=19% Similarity=0.166 Sum_probs=24.5
Q ss_pred CCCHHHHHHHHHHHHHHHCCCCCCCceeeEEE
Q 034492 2 PLPNDEIIRRVAKQVLALFPSSQGLEVIWSSF 33 (93)
Q Consensus 2 ~~~deel~~~v~~eL~~~~P~~~~a~v~~~~V 33 (93)
.++++++++.++.+|+++++......+....+
T Consensus 63 ~l~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~ 94 (109)
T d2dw4a3 63 NISDDVIVGRCLAILKGIFGSSAVPQPKETVV 94 (109)
T ss_dssp TSCHHHHHHHHHHHHHHHHCTTTCCCCSEEEE
T ss_pred hcCHHHHHHHHHHHHHHHhCccccCcccEEEE
Confidence 57899999999999999999654345544433
