Citrus Sinensis ID: 034493

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90---
Protein Sequence
MVLFYQIPFHLVTRLWDTYLAEGDALPDFLVYIFASFLLTWSDKLQKLDFQEMVMFLQHLPTHAWTHQELEMVLSRAYMWHSMFNNCPSHLAS
Secondary Structure (PSIPRED)
cccccccccHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHccHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHccccccccc
Secondary Structure Prediction (SSPRO)
cccHEEcccHHEEEEHHHHccccccHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHccHHHccc
Coil and Loop (DISEMBL)
mvlfyqipFHLVTRLWDTylaegdalPDFLVYIFASFLLTWSDKLQKLDFQEMVMFLQhlpthawtHQELEMVLSRAYMWHSMfnncpshlas
Flexible Loop (DISEMBL)
MVLFYQIPFHLVTRLWDTYLAEGDALPDFLVYIFASFLLTWSDKLQKLDFQEMVMFLQHLPTHAWTHQELEMVLSRAYMWHSMFNNCPSHLAS
Low Complexity Region (SEG)
MVLFYQIPFHLVTRLWDTYLAEGDALPDFLVYIFASFLLTWSDKLQKLDFQEMVMFLQHLPTHAWTHQELEMVLSRAYMWHSMFNNCPSHLAS
Disordered region (IsUnstruct)
*VLFYQIPFHLVTRLWDTYLAEGDALPDFLVYIFASFLLTWSDKLQKLDFQEMVMFLQHLPTHAWTHQELEMVLSRAYMWHSMFNNC******
Disordered Region (DISOPRED)
MVLFYQ*PFHLVTRLWDTYLAEGDALPDFLVYIFASFLLTWSDKLQKLDFQEMVMFLQHLPTHAWTHQELEMVLSRAYMWHSMFN***S****
Disordered Region (DISEMBL)
MVLFYQIPFHLVTRLWDTYLAEGDALPDFLVYIFASFLLTWSDKLQKLDFQEMVMFLQHLPTHAWTHQELEMVLSRAYMWHSMFNNCPSHLAS
Disordered Region (DISPRO)
MVLFYQIPFHLVTRLWDTYLAEGDALPDFLVYIFASFLLTWSDKLQKLDFQEMVMFLQHLPTHAWTHQELEMVLSRAYMWHSMFNNC******
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MVLFYQIPFHLVTRLWDTYLAEGDALPDFLVYIFASFLLTWSDKLQKLDFQEMVMFLQHLPTHAWTHQELEMVLSRAYMWHSMFNNCPSHLAS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	93	2.2.26 [Sep-21-2011]
O59737	514	GTPase-activating protein	yes	no	0.967	0.175	0.384	2e-17
Q8WUA7	517	TBC1 domain family member	yes	no	0.956	0.172	0.377	7e-14
Q8R5A6	516	TBC1 domain family member	yes	no	0.956	0.172	0.377	2e-13
Q95KI1	497	TBC1 domain family member	N/A	no	0.956	0.179	0.366	2e-13
Q08484	637	GTPase-activating protein	yes	no	0.795	0.116	0.418	3e-13
Q9NU19	505	TBC1 domain family member	no	no	0.956	0.176	0.377	5e-13
Q95LL3	505	TBC1 domain family member	N/A	no	0.956	0.176	0.377	5e-13

>sp|O59737|GYP1_SCHPO GTPase-activating protein gyp1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=gyp1 PE=3 SV=1

 Score = 87.4 bits (215), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 35/91 (38%), Positives = 66/91 (72%), Gaps = 1/91 (1%)

Query: 2   VLFYQIPFHLVTRLWDTYLAEG-DALPDFLVYIFASFLLTWSDKLQKLDFQEMVMFLQHL 60
           +L  ++    + R+WDTY+AEG     +F +Y+ A+FL+ WS +LQK++FQ++++FLQ +
Sbjct: 422 LLMRELSISNIIRMWDTYMAEGVQGFSEFHLYVCAAFLVKWSSELQKMEFQDILIFLQSI 481

Query: 61  PTHAWTHQELEMVLSRAYMWHSMFNNCPSHL 91
           PT  W+ +++E++LS A++W S+++   +HL
Sbjct: 482 PTKDWSTKDIEILLSEAFLWKSLYSGAGAHL 512

Stimulates specifically the GTPase activity of ypt1. Functions on the Golgi as a negative regulator of ypt1.
Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|Q8WUA7|TB22A_HUMAN TBC1 domain family member 22A OS=Homo sapiens GN=TBC1D22A PE=1 SV=2

 Score = 75.9 bits (185), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 34/90 (37%), Positives = 57/90 (63%), Gaps = 1/90 (1%)

Query: 2   VLFYQIPFHLVTRLWDTYLAEGDALPDFLVYIFASFLLTWSDK-LQKLDFQEMVMFLQHL 60
           +L  ++P     RLWDTY +E D    F +Y+ A+FL+ W  + L++ DFQE+++FLQ+L
Sbjct: 425 LLMREVPLRCTIRLWDTYQSEPDGFSHFHLYVCAAFLVRWRKEILEEKDFQELLLFLQNL 484

Query: 61  PTHAWTHQELEMVLSRAYMWHSMFNNCPSH 90
           PT  W  +++ ++L+ AY     F + P+H
Sbjct: 485 PTAHWDDEDISLLLAEAYRLKFAFADAPNH 514

May act as a GTPase-activating protein for Rab family protein(s).

Homo sapiens (taxid: 9606)

>sp|Q8R5A6|TB22A_MOUSE TBC1 domain family member 22A OS=Mus musculus GN=Tbc1d22a PE=2 SV=3

 Score = 74.3 bits (181), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 34/90 (37%), Positives = 57/90 (63%), Gaps = 1/90 (1%)

Query: 2   VLFYQIPFHLVTRLWDTYLAEGDALPDFLVYIFASFLLTWSDK-LQKLDFQEMVMFLQHL 60
           +L  ++P     RLWDTY +E +    F +Y+ A+FL+ W  + L++ DFQE+++FLQ+L
Sbjct: 424 LLMRELPLRCTIRLWDTYQSEPEGFSHFHLYVCAAFLVRWRREILEERDFQELLLFLQNL 483

Query: 61  PTHAWTHQELEMVLSRAYMWHSMFNNCPSH 90
           PT  W  Q++ ++L+ AY     F + P+H
Sbjct: 484 PTARWDDQDVSLLLAEAYRLKFAFADAPNH 513

May act as a GTPase-activating protein for Rab family protein(s).

Mus musculus (taxid: 10090)

>sp|Q95KI1|TB22A_MACFA TBC1 domain family member 22A (Fragment) OS=Macaca fascicularis GN=TBC1D22A PE=2 SV=2

 Score = 73.9 bits (180), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 33/90 (36%), Positives = 57/90 (63%), Gaps = 1/90 (1%)

Query: 2   VLFYQIPFHLVTRLWDTYLAEGDALPDFLVYIFASFLLTWSDK-LQKLDFQEMVMFLQHL 60
           +L  ++P     RLWDTY +E +    F +Y+ A+FL+ W  + L++ DFQE+++FLQ+L
Sbjct: 405 LLMREVPLRCTIRLWDTYQSEPEGFSHFHLYVCAAFLVRWRKEILEEKDFQELLLFLQNL 464

Query: 61  PTHAWTHQELEMVLSRAYMWHSMFNNCPSH 90
           PT  W  +++ ++L+ AY     F + P+H
Sbjct: 465 PTAHWDDEDISLLLAEAYRLKFAFADAPNH 494

May act as a GTPase-activating protein for Rab family protein(s).

Macaca fascicularis (taxid: 9541)

>sp|Q08484|GYP1_YEAST GTPase-activating protein GYP1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=GYP1 PE=1 SV=1

 Score = 73.9 bits (180), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 31/74 (41%), Positives = 51/74 (68%)

Query: 17  DTYLAEGDALPDFLVYIFASFLLTWSDKLQKLDFQEMVMFLQHLPTHAWTHQELEMVLSR 76
           D+      +L +F V++ A+FL+ WSD+L ++DFQE + FLQ+ PT  WT  ++EM+LS 
Sbjct: 562 DSGKMRQSSLNEFHVFVCAAFLIKWSDQLMEMDFQETITFLQNPPTKDWTETDIEMLLSE 621

Query: 77  AYMWHSMFNNCPSH 90
           A++W S++ +  SH
Sbjct: 622 AFIWQSLYKDATSH 635

Stimulates specifically the GTPase activity of YPT1. Functions on the Golgi as a negative regulator of YPT1.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

>sp|Q9NU19|TB22B_HUMAN TBC1 domain family member 22B OS=Homo sapiens GN=TBC1D22B PE=1 SV=3

 Score = 72.8 bits (177), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 34/90 (37%), Positives = 56/90 (62%), Gaps = 1/90 (1%)

Query: 2   VLFYQIPFHLVTRLWDTYLAEGDALPDFLVYIFASFLLTWSDK-LQKLDFQEMVMFLQHL 60
           +L  ++P     RLWDTY +E +    F +Y+ A+FL+ W  + L + DFQ ++M LQ+L
Sbjct: 413 LLMRELPLRCTIRLWDTYQSEPEGFSHFHLYVCAAFLIKWRKEILDEEDFQGLLMLLQNL 472

Query: 61  PTHAWTHQELEMVLSRAYMWHSMFNNCPSH 90
           PT  W ++E+ ++L+ AY    MF + P+H
Sbjct: 473 PTIHWGNEEIGLLLAEAYRLKYMFADAPNH 502

May act as a GTPase-activating protein for Rab family protein(s).

Homo sapiens (taxid: 9606)

>sp|Q95LL3|TB22B_MACFA TBC1 domain family member 22B OS=Macaca fascicularis GN=TBC1D22B PE=2 SV=1

 Score = 72.8 bits (177), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 34/90 (37%), Positives = 56/90 (62%), Gaps = 1/90 (1%)

Query: 2   VLFYQIPFHLVTRLWDTYLAEGDALPDFLVYIFASFLLTWSDK-LQKLDFQEMVMFLQHL 60
           +L  ++P     RLWDTY +E +    F +Y+ A+FL+ W  + L + DFQ ++M LQ+L
Sbjct: 413 LLMRELPLRCTIRLWDTYQSEPEGFSHFHLYVCAAFLIKWRKEILDEEDFQGLLMLLQNL 472

Query: 61  PTHAWTHQELEMVLSRAYMWHSMFNNCPSH 90
           PT  W ++E+ ++L+ AY    MF + P+H
Sbjct: 473 PTIHWGNEEIGLLLAEAYRLKYMFADAPNH 502

May act as a GTPase-activating protein for Rab family protein(s).

Macaca fascicularis (taxid: 9541)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	93
255578898	430	conserved hypothetical protein [Ricinus	0.989	0.213	0.902	4e-43
356545411	446	PREDICTED: LOW QUALITY PROTEIN: TBC1 dom	0.989	0.206	0.880	9e-43
225434032	448	PREDICTED: TBC1 domain family member 22B	0.989	0.205	0.880	5e-42
224095614	442	predicted protein [Populus trichocarpa]	0.989	0.208	0.869	1e-41
356556968	455	PREDICTED: GTPase-activating protein GYP	0.989	0.202	0.880	1e-41
449468862	456	PREDICTED: GTPase-activating protein GYP	0.989	0.201	0.847	3e-41
357454521	448	TBC1 domain family member 22A [Medicago	0.989	0.205	0.858	3e-41
357473087	466	TBC1 domain family member 22A [Medicago	0.978	0.195	0.857	4e-41
388519633	445	unknown [Lotus japonicus]	0.989	0.206	0.847	5e-41
356538869	448	PREDICTED: TBC1 domain family member 22B	0.989	0.205	0.858	5e-41

>gi|255578898|ref|XP_002530302.1| conserved hypothetical protein [Ricinus communis] gi|223530158|gb|EEF32069.1| conserved hypothetical protein [Ricinus communis]

 Score =  178 bits (451), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 83/92 (90%), Positives = 87/92 (94%)

Query: 2   VLFYQIPFHLVTRLWDTYLAEGDALPDFLVYIFASFLLTWSDKLQKLDFQEMVMFLQHLP 61
           +L  +IPFHLVTRLWDTYLAEGDALPDFLVYI+ASFLLTWSDKLQKLDFQEMVMFLQHLP
Sbjct: 339 LLIREIPFHLVTRLWDTYLAEGDALPDFLVYIYASFLLTWSDKLQKLDFQEMVMFLQHLP 398

Query: 62  THAWTHQELEMVLSRAYMWHSMFNNCPSHLAS 93
           T  WTHQELEMVLSRAYMWHSMFN+ PSHLAS
Sbjct: 399 TQNWTHQELEMVLSRAYMWHSMFNSSPSHLAS 430

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356545411|ref|XP_003541136.1| PREDICTED: LOW QUALITY PROTEIN: TBC1 domain family member 22B-like [Glycine max]

 Score =  177 bits (448), Expect = 9e-43,   Method: Compositional matrix adjust.
 Identities = 81/92 (88%), Positives = 87/92 (94%)

Query: 2   VLFYQIPFHLVTRLWDTYLAEGDALPDFLVYIFASFLLTWSDKLQKLDFQEMVMFLQHLP 61
           +L  +IPFHL+TRLWDTYLAEGDALPDFLVYIFASFLLTWSDKLQKLDFQE+VMFLQHLP
Sbjct: 355 LLIREIPFHLITRLWDTYLAEGDALPDFLVYIFASFLLTWSDKLQKLDFQELVMFLQHLP 414

Query: 62  THAWTHQELEMVLSRAYMWHSMFNNCPSHLAS 93
           T  WTHQELEMVLSRA+MWH+MFNN PSHLAS
Sbjct: 415 TENWTHQELEMVLSRAFMWHTMFNNSPSHLAS 446

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225434032|ref|XP_002273924.1| PREDICTED: TBC1 domain family member 22B [Vitis vinifera] gi|296084248|emb|CBI24636.3| unnamed protein product [Vitis vinifera]

 Score =  174 bits (442), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 81/92 (88%), Positives = 87/92 (94%)

Query: 2   VLFYQIPFHLVTRLWDTYLAEGDALPDFLVYIFASFLLTWSDKLQKLDFQEMVMFLQHLP 61
           +L  +IPF+LVTRLWDTYLAEGDALPDFLVYIFASFLLTWSD LQKLDFQE+VMFLQHLP
Sbjct: 357 LLIREIPFNLVTRLWDTYLAEGDALPDFLVYIFASFLLTWSDTLQKLDFQELVMFLQHLP 416

Query: 62  THAWTHQELEMVLSRAYMWHSMFNNCPSHLAS 93
           TH WTHQELEMVLSRAYMWH+MFN+ PSHLAS
Sbjct: 417 THNWTHQELEMVLSRAYMWHTMFNSSPSHLAS 448

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224095614|ref|XP_002310419.1| predicted protein [Populus trichocarpa] gi|222853322|gb|EEE90869.1| predicted protein [Populus trichocarpa]

 Score =  173 bits (439), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 80/92 (86%), Positives = 87/92 (94%)

Query: 2   VLFYQIPFHLVTRLWDTYLAEGDALPDFLVYIFASFLLTWSDKLQKLDFQEMVMFLQHLP 61
           +L  +IPF+LVTRLWDTYLAEGDALPDFLVYIFASFLLTWS++LQKLDFQE+VMFLQHLP
Sbjct: 351 LLIREIPFNLVTRLWDTYLAEGDALPDFLVYIFASFLLTWSEELQKLDFQELVMFLQHLP 410

Query: 62  THAWTHQELEMVLSRAYMWHSMFNNCPSHLAS 93
           T  WTHQELEMVLSRA+MWHSMFNN PSHLAS
Sbjct: 411 TQNWTHQELEMVLSRAFMWHSMFNNSPSHLAS 442

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356556968|ref|XP_003546791.1| PREDICTED: GTPase-activating protein GYP1-like [Glycine max]

 Score =  173 bits (439), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 81/92 (88%), Positives = 85/92 (92%)

Query: 2   VLFYQIPFHLVTRLWDTYLAEGDALPDFLVYIFASFLLTWSDKLQKLDFQEMVMFLQHLP 61
           +L  +IPFHLVTRLWDTYLAEGDALPDFLVYI ASFLLTWSDKLQKLDFQEMVMFLQHLP
Sbjct: 364 LLIREIPFHLVTRLWDTYLAEGDALPDFLVYISASFLLTWSDKLQKLDFQEMVMFLQHLP 423

Query: 62  THAWTHQELEMVLSRAYMWHSMFNNCPSHLAS 93
           T  WT QELEMVLSRA+MWHSMFNN PSHLA+
Sbjct: 424 TKNWTQQELEMVLSRAFMWHSMFNNSPSHLAN 455

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449468862|ref|XP_004152140.1| PREDICTED: GTPase-activating protein GYP1-like [Cucumis sativus] gi|449484756|ref|XP_004156971.1| PREDICTED: GTPase-activating protein GYP1-like [Cucumis sativus]

 Score =  172 bits (435), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 78/92 (84%), Positives = 85/92 (92%)

Query: 2   VLFYQIPFHLVTRLWDTYLAEGDALPDFLVYIFASFLLTWSDKLQKLDFQEMVMFLQHLP 61
           +L  +IPFHLVTRLWDTYLAEGD+LPDFLVYIFASFLLTWS++LQKLDFQE+VMFLQH+P
Sbjct: 365 LLIREIPFHLVTRLWDTYLAEGDSLPDFLVYIFASFLLTWSEQLQKLDFQELVMFLQHVP 424

Query: 62  THAWTHQELEMVLSRAYMWHSMFNNCPSHLAS 93
           T  WTHQELEMVLSRAYMWHSMFNN P HL S
Sbjct: 425 TQNWTHQELEMVLSRAYMWHSMFNNSPRHLVS 456

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357454521|ref|XP_003597541.1| TBC1 domain family member 22A [Medicago truncatula] gi|355486589|gb|AES67792.1| TBC1 domain family member 22A [Medicago truncatula] gi|388503286|gb|AFK39709.1| unknown [Medicago truncatula]

 Score =  172 bits (435), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 79/92 (85%), Positives = 86/92 (93%)

Query: 2   VLFYQIPFHLVTRLWDTYLAEGDALPDFLVYIFASFLLTWSDKLQKLDFQEMVMFLQHLP 61
           +L  +IPFHLVTRLWDTYLAEGDALPDFLVYIFASFLLTWSD++QKLDFQE+VMFLQHLP
Sbjct: 357 LLIREIPFHLVTRLWDTYLAEGDALPDFLVYIFASFLLTWSDEVQKLDFQELVMFLQHLP 416

Query: 62  THAWTHQELEMVLSRAYMWHSMFNNCPSHLAS 93
           T  WT QELEMVLSRA+MWHSMFNN PSHLA+
Sbjct: 417 TQNWTDQELEMVLSRAFMWHSMFNNSPSHLAA 448

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357473087|ref|XP_003606828.1| TBC1 domain family member 22A [Medicago truncatula] gi|355507883|gb|AES89025.1| TBC1 domain family member 22A [Medicago truncatula]

 Score =  171 bits (434), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 78/91 (85%), Positives = 85/91 (93%)

Query: 3   LFYQIPFHLVTRLWDTYLAEGDALPDFLVYIFASFLLTWSDKLQKLDFQEMVMFLQHLPT 62
           L+ QIPF L+TRLWDTYLAEGDALPDFLVYIFASFLLTWSDKLQ+L+FQE+VMFLQHLPT
Sbjct: 376 LYKQIPFDLITRLWDTYLAEGDALPDFLVYIFASFLLTWSDKLQRLEFQELVMFLQHLPT 435

Query: 63  HAWTHQELEMVLSRAYMWHSMFNNCPSHLAS 93
             WTHQ+LEMVLSRA+MWHSMFNN PSH AS
Sbjct: 436 QNWTHQDLEMVLSRAFMWHSMFNNSPSHFAS 466

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388519633|gb|AFK47878.1| unknown [Lotus japonicus]

 Score =  171 bits (433), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 78/92 (84%), Positives = 87/92 (94%)

Query: 2   VLFYQIPFHLVTRLWDTYLAEGDALPDFLVYIFASFLLTWSDKLQKLDFQEMVMFLQHLP 61
           +L  +IPF++VTRLWDTYLAEGDALPDFLVYIFASFLLTWSDKLQKLDFQ++VMFLQHLP
Sbjct: 354 LLIREIPFNMVTRLWDTYLAEGDALPDFLVYIFASFLLTWSDKLQKLDFQDLVMFLQHLP 413

Query: 62  THAWTHQELEMVLSRAYMWHSMFNNCPSHLAS 93
           T  WTHQELEMVLSRA+MWHSMFNN P+HLA+
Sbjct: 414 TQDWTHQELEMVLSRAFMWHSMFNNSPNHLAT 445

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356538869|ref|XP_003537923.1| PREDICTED: TBC1 domain family member 22B-like [Glycine max]

 Score =  171 bits (433), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 79/92 (85%), Positives = 86/92 (93%)

Query: 2   VLFYQIPFHLVTRLWDTYLAEGDALPDFLVYIFASFLLTWSDKLQKLDFQEMVMFLQHLP 61
           +L  +IPFHL+TRLWDTYLAEGDALPDFLVYIFASFLLTWSDKLQKL FQE+VMFLQHLP
Sbjct: 357 LLIREIPFHLITRLWDTYLAEGDALPDFLVYIFASFLLTWSDKLQKLHFQELVMFLQHLP 416

Query: 62  THAWTHQELEMVLSRAYMWHSMFNNCPSHLAS 93
           T  WTH+ELEMVLSRA+MWH+MFNN PSHLAS
Sbjct: 417 TENWTHRELEMVLSRAFMWHTMFNNSPSHLAS 448

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	93
TAIR|locus:2054477	440	AT2G30710 [Arabidopsis thalian	0.989	0.209	0.836	4.2e-40
CGD|CAL0001941	564	GYP1 [Candida albicans (taxid:	0.967	0.159	0.417	5e-18
POMBASE|SPBC530.01	514	gyp1 "GTPase activating protei	0.967	0.175	0.384	1.8e-17
DICTYBASE|DDB_G0269982	544	DDB_G0269982 "TBC domain prote	0.989	0.169	0.423	2.6e-17
SGD|S000005596	637	GYP1 "Cis-golgi GTPase-activat	0.709	0.103	0.454	4.2e-16
FB|FBgn0038855	546	CG5745 [Drosophila melanogaste	0.967	0.164	0.406	6.8e-16
UNIPROTKB|E2R0K8	517	TBC1D22A "Uncharacterized prot	0.956	0.172	0.377	9.4e-15
UNIPROTKB|B0QYI1	458	TBC1D22A "TBC1 domain family m	0.956	0.194	0.377	1.5e-14
UNIPROTKB|B0QYI3	470	TBC1D22A "TBC1 domain family,	0.956	0.189	0.377	1.6e-14
UNIPROTKB|Q8WUA7	517	TBC1D22A "TBC1 domain family m	0.956	0.172	0.377	2e-14

TAIR|locus:2054477 AT2G30710 [Arabidopsis thaliana (taxid:3702)]

 Score = 427 (155.4 bits), Expect = 4.2e-40, P = 4.2e-40
 Identities = 77/92 (83%), Positives = 86/92 (93%)

Query:     2 VLFYQIPFHLVTRLWDTYLAEGDALPDFLVYIFASFLLTWSDKLQKLDFQEMVMFLQHLP 61
             +L  +IPF+L+ RLWDTYLAEGDALPDFLVYI+ASFLLTWSD+L+KLDFQEMVMFLQHLP
Sbjct:   349 LLIREIPFNLINRLWDTYLAEGDALPDFLVYIYASFLLTWSDELKKLDFQEMVMFLQHLP 408

Query:    62 THAWTHQELEMVLSRAYMWHSMFNNCPSHLAS 93
             TH W+ QELEMVLSRAYMWHSMFNN P+HLAS
Sbjct:   409 THNWSDQELEMVLSRAYMWHSMFNNSPNHLAS 440

GO:0005097 "Rab GTPase activator activity" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=ISM

GO:0032313 "regulation of Rab GTPase activity" evidence=IEA

GO:0046686 "response to cadmium ion" evidence=RCA

CGD|CAL0001941 GYP1 [Candida albicans (taxid:5476)]

 Score = 227 (85.0 bits), Expect = 5.0e-18, P = 5.0e-18
 Identities = 38/91 (41%), Positives = 65/91 (71%)

Query:     2 VLFYQIPFHLVTRLWDTYLAEGD-ALPDFLVYIFASFLLTWSDKLQKLDFQEMVMFLQHL 60
             +L  ++P  L+ R+WDTYL+E       F  Y+ A+FL+ +S +L++ DFQE+++FLQ+ 
Sbjct:   473 LLMRELPMQLIIRMWDTYLSETPLGFNTFHTYVCAAFLIKFSSELKEKDFQEIILFLQNP 532

Query:    61 PTHAWTHQELEMVLSRAYMWHSMFNNCPSHL 91
             PT +WT +++E++LS AY+W S++ N  +HL
Sbjct:   533 PTSSWTEKDVELMLSEAYIWQSLYKNASAHL 563

GO:0005634 "nucleus" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0016192 "vesicle-mediated transport" evidence=IEA

GO:0005097 "Rab GTPase activator activity" evidence=IEA

POMBASE|SPBC530.01 gyp1 "GTPase activating protein Gyp1 (predicted)" [Schizosaccharomyces pombe (taxid:4896)]

 Score = 221 (82.9 bits), Expect = 1.8e-17, P = 1.8e-17
 Identities = 35/91 (38%), Positives = 66/91 (72%)

Query:     2 VLFYQIPFHLVTRLWDTYLAEG-DALPDFLVYIFASFLLTWSDKLQKLDFQEMVMFLQHL 60
             +L  ++    + R+WDTY+AEG     +F +Y+ A+FL+ WS +LQK++FQ++++FLQ +
Sbjct:   422 LLMRELSISNIIRMWDTYMAEGVQGFSEFHLYVCAAFLVKWSSELQKMEFQDILIFLQSI 481

Query:    61 PTHAWTHQELEMVLSRAYMWHSMFNNCPSHL 91
             PT  W+ +++E++LS A++W S+++   +HL
Sbjct:   482 PTKDWSTKDIEILLSEAFLWKSLYSGAGAHL 512

GO:0005097 "Rab GTPase activator activity" evidence=ISM

GO:0005634 "nucleus" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0005795 "Golgi stack" evidence=IEA

GO:0005829 "cytosol" evidence=IDA

GO:0016192 "vesicle-mediated transport" evidence=NAS

GO:0032313 "regulation of Rab GTPase activity" evidence=ISM

GO:0071276 "cellular response to cadmium ion" evidence=IMP

GO:0071585 "detoxification of cadmium ion" evidence=IMP

DICTYBASE|DDB_G0269982 DDB_G0269982 "TBC domain protein" [Dictyostelium discoideum (taxid:44689)]

 Score = 220 (82.5 bits), Expect = 2.6e-17, P = 2.6e-17
 Identities = 39/92 (42%), Positives = 62/92 (67%)

Query:     2 VLFYQIPFHLVTRLWDTYLAEGDALPDFLVYIFASFLLTWSDKLQKLDFQEMVMFLQHLP 61
             +L  +IPF LV R+WDTYL+E +    F VY+ A+FL+ WSD+L++ DF ++++FLQ  P
Sbjct:   441 LLMREIPFPLVIRMWDTYLSEKEGFSVFHVYVCAAFLVLWSDELKQRDFPDIMIFLQKPP 500

Query:    62 THAWTHQELEMVLSRAYMWHSMFNNCPSHLAS 93
             T  W  +++E + S A+ + S++    SHL S
Sbjct:   501 TQNWEERDIESLFSTAFYYRSLYEEAQSHLKS 532

GO:0032851 "positive regulation of Rab GTPase activity" evidence=IEA

GO:0032313 "regulation of Rab GTPase activity" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0005097 "Rab GTPase activator activity" evidence=IEA

SGD|S000005596 GYP1 "Cis-golgi GTPase-activating protein (GAP) for yeast Rabs" [Saccharomyces cerevisiae (taxid:4932)]

 Score = 184 (69.8 bits), Expect = 4.2e-16, Sum P(2) = 4.2e-16
 Identities = 30/66 (45%), Positives = 49/66 (74%)

Query:    25 ALPDFLVYIFASFLLTWSDKLQKLDFQEMVMFLQHLPTHAWTHQELEMVLSRAYMWHSMF 84
             +L +F V++ A+FL+ WSD+L ++DFQE + FLQ+ PT  WT  ++EM+LS A++W S++
Sbjct:   570 SLNEFHVFVCAAFLIKWSDQLMEMDFQETITFLQNPPTKDWTETDIEMLLSEAFIWQSLY 629

Query:    85 NNCPSH 90
              +  SH
Sbjct:   630 KDATSH 635

GO:0005795 "Golgi stack" evidence=IEA

GO:0005739 "mitochondrion" evidence=IDA

GO:0005794 "Golgi apparatus" evidence=IEA;IDA

GO:0032313 "regulation of Rab GTPase activity" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0005097 "Rab GTPase activator activity" evidence=IEA;ISS;IMP;IDA;IPI

GO:0005096 "GTPase activator activity" evidence=IEA

GO:0043547 "positive regulation of GTPase activity" evidence=IEA

GO:0032851 "positive regulation of Rab GTPase activity" evidence=IEA

GO:0016192 "vesicle-mediated transport" evidence=IDA

FB|FBgn0038855 CG5745 [Drosophila melanogaster (taxid:7227)]

 Score = 207 (77.9 bits), Expect = 6.8e-16, P = 6.8e-16
 Identities = 37/91 (40%), Positives = 60/91 (65%)

Query:     2 VLFYQIPFHLVTRLWDTYLAEGDALPDFLVYIFASFLLTWSDKL-QKLDFQEMVMFLQHL 60
             +L  ++P H   RLWDTYLAE D    F +Y+ A+FLL W ++L Q+ DFQ +++ LQ+L
Sbjct:   452 LLTRELPLHCTIRLWDTYLAESDGFALFHLYVCAAFLLHWKEQLMQQNDFQGLMLLLQNL 511

Query:    61 PTHAWTHQELEMVLSRAYMWHSMFNNCPSHL 91
             PTH W+ +++ ++L+ A+     + + P HL
Sbjct:   512 PTHNWSDRQINVLLAEAFRLKFTYADAPKHL 542

GO:0005096 "GTPase activator activity" evidence=ISS

GO:0032313 "regulation of Rab GTPase activity" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0005097 "Rab GTPase activator activity" evidence=IEA

GO:0006911 "phagocytosis, engulfment" evidence=IMP

UNIPROTKB|E2R0K8 TBC1D22A "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 196 (74.1 bits), Expect = 9.4e-15, P = 9.4e-15
 Identities = 34/90 (37%), Positives = 58/90 (64%)

Query:     2 VLFYQIPFHLVTRLWDTYLAEGDALPDFLVYIFASFLLTWSDK-LQKLDFQEMVMFLQHL 60
             +L  ++P H   RLWDTY +E +    F +Y+ A+FL+ W  + L++ DFQE+++FLQ+L
Sbjct:   425 LLMREVPLHCTIRLWDTYQSEPEGFSHFHLYVCAAFLVRWRKEILEEKDFQELLLFLQNL 484

Query:    61 PTHAWTHQELEMVLSRAYMWHSMFNNCPSH 90
             PT  W  +++ ++L+ AY     F + P+H
Sbjct:   485 PTAHWGDEDISLLLAEAYRLKFAFADAPNH 514

GO:0005622 "intracellular" evidence=IEA

GO:0005097 "Rab GTPase activator activity" evidence=IEA

UNIPROTKB|B0QYI1 TBC1D22A "TBC1 domain family member 22A" [Homo sapiens (taxid:9606)]

 Score = 193 (73.0 bits), Expect = 1.5e-14, P = 1.5e-14
 Identities = 34/90 (37%), Positives = 57/90 (63%)

Query:     2 VLFYQIPFHLVTRLWDTYLAEGDALPDFLVYIFASFLLTWSDK-LQKLDFQEMVMFLQHL 60
             +L  ++P     RLWDTY +E D    F +Y+ A+FL+ W  + L++ DFQE+++FLQ+L
Sbjct:   366 LLMREVPLRCTIRLWDTYQSEPDGFSHFHLYVCAAFLVRWRKEILEEKDFQELLLFLQNL 425

Query:    61 PTHAWTHQELEMVLSRAYMWHSMFNNCPSH 90
             PT  W  +++ ++L+ AY     F + P+H
Sbjct:   426 PTAHWDDEDISLLLAEAYRLKFAFADAPNH 455

GO:0005097 "Rab GTPase activator activity" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

UNIPROTKB|B0QYI3 TBC1D22A "TBC1 domain family, member 22A, isoform CRA_c" [Homo sapiens (taxid:9606)]

 Score = 193 (73.0 bits), Expect = 1.6e-14, P = 1.6e-14
 Identities = 34/90 (37%), Positives = 57/90 (63%)

Query:     2 VLFYQIPFHLVTRLWDTYLAEGDALPDFLVYIFASFLLTWSDK-LQKLDFQEMVMFLQHL 60
             +L  ++P     RLWDTY +E D    F +Y+ A+FL+ W  + L++ DFQE+++FLQ+L
Sbjct:   378 LLMREVPLRCTIRLWDTYQSEPDGFSHFHLYVCAAFLVRWRKEILEEKDFQELLLFLQNL 437

Query:    61 PTHAWTHQELEMVLSRAYMWHSMFNNCPSH 90
             PT  W  +++ ++L+ AY     F + P+H
Sbjct:   438 PTAHWDDEDISLLLAEAYRLKFAFADAPNH 467

GO:0005097 "Rab GTPase activator activity" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

UNIPROTKB|Q8WUA7 TBC1D22A "TBC1 domain family member 22A" [Homo sapiens (taxid:9606)]

 Score = 193 (73.0 bits), Expect = 2.0e-14, P = 2.0e-14
 Identities = 34/90 (37%), Positives = 57/90 (63%)

Query:     2 VLFYQIPFHLVTRLWDTYLAEGDALPDFLVYIFASFLLTWSDK-LQKLDFQEMVMFLQHL 60
             +L  ++P     RLWDTY +E D    F +Y+ A+FL+ W  + L++ DFQE+++FLQ+L
Sbjct:   425 LLMREVPLRCTIRLWDTYQSEPDGFSHFHLYVCAAFLVRWRKEILEEKDFQELLLFLQNL 484

Query:    61 PTHAWTHQELEMVLSRAYMWHSMFNNCPSH 90
             PT  W  +++ ++L+ AY     F + P+H
Sbjct:   485 PTAHWDDEDISLLLAEAYRLKFAFADAPNH 514

GO:0005097 "Rab GTPase activator activity" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0042803 "protein homodimerization activity" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00034614001 SubName- Full=Chromosome chr5 scaffold_72, whole genome shotgun sequence; (448 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	93
KOG1092	484	consensus Ypt/Rab-specific GTPase-activating prote	100.0
KOG4567	370	consensus GTPase-activating protein [General funct	99.91
KOG1091	625	consensus Ypt/Rab-specific GTPase-activating prote	99.23
KOG1093	725	consensus Predicted protein kinase (contains TBC a	98.59
PF00566	214	RabGAP-TBC: Rab-GTPase-TBC domain; InterPro: IPR00	98.31
KOG2224	781	consensus Uncharacterized conserved protein, conta	98.27
KOG2223	586	consensus Uncharacterized conserved protein, conta	98.17
COG5210	496	GTPase-activating protein [General function predic	98.04
KOG2197	488	consensus Ypt/Rab-specific GTPase-activating prote	97.46
KOG1102	397	consensus Rab6 GTPase activator GAPCenA and relate	96.45
KOG2058	436	consensus Ypt/Rab GTPase activating protein [Intra	96.1
KOG3636	669	consensus Uncharacterized conserved protein, conta	95.81
KOG2595	395	consensus Predicted GTPase activator protein [Sign	93.24
KOG2222	848	consensus Uncharacterized conserved protein, conta	87.37
KOG4436	948	consensus Predicted GTPase activator NB4S/EVI5 (co	82.9

>KOG1092 consensus Ypt/Rab-specific GTPase-activating protein GYP1 [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=7.1e-35  Score=229.74  Aligned_cols=91  Identities=48%  Similarity=0.975  Sum_probs=89.6

Q ss_pred             ccccccCchhHHHHHHhhhccCCCcchHHHHHHHHHHHHHHHHHhhCCHHHHHHHhcCCCCCCCChHHHHHHHHHHHHHH
Q 034493            2 VLFYQIPFHLVTRLWDTYLAEGDALPDFLVYIFASFLLTWSDKLQKLDFQEMVMFLQHLPTHAWTHQELEMVLSRAYMWH   81 (93)
Q Consensus         2 ll~rEf~l~~~lrLWDt~la~~~~~~~~~~yvc~A~L~~~r~~L~~~dF~~~~~~LQ~lp~~~w~~~di~~ll~~A~~~~   81 (93)
                      ||+||||++.+|||||||+|++++|++||+|||+|+|++||++|+++||+++|.||||+|+.+|++.||+.+|++|+.+|
T Consensus       394 LLmRE~pl~~~iRlWDTY~aE~dgf~~FhvYvcAAFL~kW~~eL~e~DFQ~~ilfLQnlPT~~W~d~eIellLseA~~~k  473 (484)
T KOG1092|consen  394 LLMREFPLRCTIRLWDTYLAEPDGFNEFHVYVCAAFLLKWSSELMENDFQELILFLQNLPTHNWSDREIELLLSEAFRLK  473 (484)
T ss_pred             HHHhhccchhHHHHHHHhhcCccchHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhcCCCCCccHHHHHHHHHHHHHHH
Confidence            78999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhccCCccccc
Q 034493           82 SMFNNCPSHLA   92 (93)
Q Consensus        82 ~~~~~~~~~~~   92 (93)
                      ++|+++++|++
T Consensus       474 ~~f~da~~H~~  484 (484)
T KOG1092|consen  474 SVFSDAPNHLR  484 (484)
T ss_pred             HHHccchhccC
Confidence            99999999974

>KOG4567 consensus GTPase-activating protein [General function prediction only]

Probab=99.91  E-value=8.8e-25  Score=168.09  Aligned_cols=77  Identities=30%  Similarity=0.526  Sum_probs=74.8

Q ss_pred             CccccccCchhHHHHHHhhhccCCCcchHHHHHHHHHHHHHHHHHhhCCHHHHHHHhcCCCCCCCChHHHHHHHHHHHHH
Q 034493            1 MVLFYQIPFHLVTRLWDTYLAEGDALPDFLVYIFASFLLTWSDKLQKLDFQEMVMFLQHLPTHAWTHQELEMVLSRAYMW   80 (93)
Q Consensus         1 ~ll~rEf~l~~~lrLWDt~la~~~~~~~~~~yvc~A~L~~~r~~L~~~dF~~~~~~LQ~lp~~~w~~~di~~ll~~A~~~   80 (93)
                      |||+||||+||||||||++|||+.+| ++++|||||||+..|+.|+++||+++|++|||+|+.|     |..+++-|..+
T Consensus       286 LLLsQEF~lpDvi~lWDsl~sD~~rf-d~Ll~iCcsmlil~Re~il~~DF~~nmkLLQ~yp~td-----i~~~l~~A~~L  359 (370)
T KOG4567|consen  286 LLLSQEFPLPDVIRLWDSLLSDPQRF-DFLLYICCSMLILVRERILEGDFTVNMKLLQNYPTTD-----ISKMLAVADSL  359 (370)
T ss_pred             HHHhccCCchhHHHHHHHHhcChhhh-HHHHHHHHHHHHHHHHHHHhcchHHHHHHHhcCCCCC-----HHHHHHHHHHH
Confidence            58999999999999999999999999 9999999999999999999999999999999999999     99999999999


Q ss_pred             HHh
Q 034493           81 HSM   83 (93)
Q Consensus        81 ~~~   83 (93)
                      |..
T Consensus       360 r~~  362 (370)
T KOG4567|consen  360 RDK  362 (370)
T ss_pred             Hhc
Confidence            965

>KOG1091 consensus Ypt/Rab-specific GTPase-activating protein GYP6 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.23  E-value=2.2e-11  Score=99.63  Aligned_cols=81  Identities=17%  Similarity=0.393  Sum_probs=75.9

Q ss_pred             CccccccCchhHHHHHH-hhhccCCCcchHHHHHHHHHHHHHHHHHhhCCHHHHHHHhcCCCCCCCChHHHHHHHHHHHH
Q 034493            1 MVLFYQIPFHLVTRLWD-TYLAEGDALPDFLVYIFASFLLTWSDKLQKLDFQEMVMFLQHLPTHAWTHQELEMVLSRAYM   79 (93)
Q Consensus         1 ~ll~rEf~l~~~lrLWD-t~la~~~~~~~~~~yvc~A~L~~~r~~L~~~dF~~~~~~LQ~lp~~~w~~~di~~ll~~A~~   79 (93)
                      |||-||||+.+++-+|| .++++..+. .+..|+.+|||..+|+.|+..+++.|++.|-|+|...    |++.++..|..
T Consensus       286 lLFGREfpL~dLLiVWD~~l~~d~pr~-~Lv~~m~VsmLL~IRd~Llss~~~tcL~~Lm~yP~~~----Dv~~~iekAl~  360 (625)
T KOG1091|consen  286 LLFGREFPLQDLLIVWDHVLIFDSPRG-ILVACMFVSMLLYIRDSLLSSEYQTCLQYLMNYPEII----DVDKFIEKALH  360 (625)
T ss_pred             HHHcchhHHHHHHHHhhhhhhccCchH-HHHHHHHHHHHHHHHHHHHHhcchhHHHHHhcCCCcC----cHHHHHHHHHH
Confidence            58999999999999999 899988877 9999999999999999999999999999999999764    69999999999


Q ss_pred             HHHhccC
Q 034493           80 WHSMFNN   86 (93)
Q Consensus        80 ~~~~~~~   86 (93)
                      +|+.|..
T Consensus       361 l~~~~~K  367 (625)
T KOG1091|consen  361 LQKLFPK  367 (625)
T ss_pred             HHHhccc
Confidence            9998877

>KOG1093 consensus Predicted protein kinase (contains TBC and RHOD domains) [General function prediction only]

Probab=98.59  E-value=8.6e-08  Score=79.37  Aligned_cols=78  Identities=19%  Similarity=0.441  Sum_probs=70.6

Q ss_pred             ccccccCchhHHHHHHhhhccCCCcchHHHHHHHHHHHHHHHHHhhCCHHHHHHHhcCCCCCCCChHHHHHHHHHHHHHH
Q 034493            2 VLFYQIPFHLVTRLWDTYLAEGDALPDFLVYIFASFLLTWSDKLQKLDFQEMVMFLQHLPTHAWTHQELEMVLSRAYMWH   81 (93)
Q Consensus         2 ll~rEf~l~~~lrLWDt~la~~~~~~~~~~yvc~A~L~~~r~~L~~~dF~~~~~~LQ~lp~~~w~~~di~~ll~~A~~~~   81 (93)
                      +|+-+||++..+.|||.+++.+.   .|.+.+++|++...|+.|+...|.+++.++-++|..+     |+.++++.+.+.
T Consensus       519 ~Fshvlpl~kil~LwD~lml~~~---SFplmi~vAil~~lR~~LLa~nfne~illf~d~pdld-----Id~~Ires~~l~  590 (725)
T KOG1093|consen  519 MFSHVLPLHKILHLWDNLMLGHS---SFPLMIGVAILIQLRDPLLACNFNECILLFSDLPDLD-----IDVCIRESYHLM  590 (725)
T ss_pred             HHHhhccHHHHHHHHHHHhcCCC---ccHHHHHHHHHHHhhhhhhhCCchhheeeeccCCccc-----HHHHHHHHhhhh
Confidence            46789999999999999999876   4589999999999999999999999999999999887     999999999888


Q ss_pred             HhccCC
Q 034493           82 SMFNNC   87 (93)
Q Consensus        82 ~~~~~~   87 (93)
                      ++=..+
T Consensus       591 e~tP~s  596 (725)
T KOG1093|consen  591 ETTPKS  596 (725)
T ss_pred             hCCCCC
Confidence            775544

>PF00566 RabGAP-TBC: Rab-GTPase-TBC domain; InterPro: IPR000195 Identification of a TBC domain in GYP6_YEAST and GYP7_YEAST, which are GTPase activator proteins of yeast Ypt6 and Ypt7, imply that these domains are GTPase activator proteins of Rab-like small GTPases []

Probab=98.31  E-value=7.7e-07  Score=62.13  Aligned_cols=42  Identities=36%  Similarity=0.624  Sum_probs=35.0

Q ss_pred             ccccccCchhHHHHHHhhhccCCCcchHHHHHHHHHHHHHHHHHh
Q 034493            2 VLFYQIPFHLVTRLWDTYLAEGDALPDFLVYIFASFLLTWSDKLQ   46 (93)
Q Consensus         2 ll~rEf~l~~~lrLWDt~la~~~~~~~~~~yvc~A~L~~~r~~L~   46 (93)
                      +|++++|.++++|||| ++.+++.  .+++++|+|++...|++|+
T Consensus       173 lF~~~l~~~~~~~lwD-~l~~g~~--~~l~~~~lail~~~~~~il  214 (214)
T PF00566_consen  173 LFSRSLPFDDVLRLWD-FLLEGYK--FFLFFIALAILKYLRDQIL  214 (214)
T ss_dssp             TTTTTS-HHHHHHHHH-HHHHCTT--HHHHHHHHHHHHHTHHHHH
T ss_pred             hcCCcCCHHHHHHHHH-HHHcCCC--cHHHHHHHHHHHHHHHHhC
Confidence            6899999999999999 6666552  3489999999999999985

; GO: 0005097 Rab GTPase activator activity, 0032313 regulation of Rab GTPase activity, 0005622 intracellular; PDB: 2G77_A 1FKM_A 3HZJ_A 3QYE_A 2QFZ_A 3QYB_A 2QQ8_A 3DZX_A 3QWL_A.

>KOG2224 consensus Uncharacterized conserved protein, contains TBC domain [Signal transduction mechanisms; General function prediction only]

Probab=98.27  E-value=1e-06  Score=71.78  Aligned_cols=81  Identities=20%  Similarity=0.343  Sum_probs=64.5

Q ss_pred             CccccccCchhHHHHHHhhhccCCCcchHHHHHHHHHHHHHHHHHh--hCCHHHHHHHhcCCCCCCCChHHHHHHHHHHH
Q 034493            1 MVLFYQIPFHLVTRLWDTYLAEGDALPDFLVYIFASFLLTWSDKLQ--KLDFQEMVMFLQHLPTHAWTHQELEMVLSRAY   78 (93)
Q Consensus         1 ~ll~rEf~l~~~lrLWDt~la~~~~~~~~~~yvc~A~L~~~r~~L~--~~dF~~~~~~LQ~lp~~~w~~~di~~ll~~A~   78 (93)
                      |.|.||||...+||+|+++||+- .-..||+|+|+|++..+.+...  +..=++++..+-|+....    |-+.||++|.
T Consensus       652 lcfkref~ea~airiweacwa~y-~tdyfhlficlaiiaiy~ddvi~q~l~~demllhf~nlam~m----dgelilrkar  726 (781)
T KOG2224|consen  652 LCFKREFPEAEAIRIWEACWAHY-LTDYFHLFICLAIIAIYADDVIAQNLAPDEMLLHFGNLAMHM----DGELILRKAR  726 (781)
T ss_pred             HHhhhcccHHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHhhhHHHHhhcCchhHHHhhhhhhhhc----CchhhHHHHH
Confidence            35789999999999999999973 2337899999999999998874  455588888888887543    3688999998


Q ss_pred             HHHHhccC
Q 034493           79 MWHSMFNN   86 (93)
Q Consensus        79 ~~~~~~~~   86 (93)
                      -+--.|-.
T Consensus       727 ~ll~qfr~  734 (781)
T KOG2224|consen  727 GLLHQFRL  734 (781)
T ss_pred             HHHHHHhh
Confidence            76655543

>KOG2223 consensus Uncharacterized conserved protein, contains TBC domain [Signal transduction mechanisms; General function prediction only]

Probab=98.17  E-value=1.8e-06  Score=69.99  Aligned_cols=59  Identities=31%  Similarity=0.634  Sum_probs=54.1

Q ss_pred             ccccccCchhHHHHHHhhhccCCCcchHHHHHHHHHHHHHHHHHhhCCHHHHHHHhcCCCCC
Q 034493            2 VLFYQIPFHLVTRLWDTYLAEGDALPDFLVYIFASFLLTWSDKLQKLDFQEMVMFLQHLPTH   63 (93)
Q Consensus         2 ll~rEf~l~~~lrLWDt~la~~~~~~~~~~yvc~A~L~~~r~~L~~~dF~~~~~~LQ~lp~~   63 (93)
                      |.+..+|++...||||.|.-|++   +|++-.++++++.+.++|+.|||..+.+||-.+|..
T Consensus       483 lyskslpldlacRIwDvy~rdge---eFlfr~~lgIlklyepkLl~mDf~~~~qfLtklp~d  541 (586)
T KOG2223|consen  483 LYSKSLPLDLACRIWDVYCRDGE---EFLFRTALGILKLYEPKLLVMDFIHVAQFLTKLPED  541 (586)
T ss_pred             HHhccCChHHhhhhhheeeecch---HHHHHHHHHHHHHccchHhhhhHHHHHHHHHhCccc
Confidence            46778999999999999999987   558889999999999999999999999999999964

>COG5210 GTPase-activating protein [General function prediction only]

Probab=98.04  E-value=9.4e-06  Score=65.28  Aligned_cols=47  Identities=28%  Similarity=0.502  Sum_probs=34.9

Q ss_pred             ccccccCchhHHHHHHhhhccCCCcchHHHHHHHHHHHHHHHHHhhCCHH
Q 034493            2 VLFYQIPFHLVTRLWDTYLAEGDALPDFLVYIFASFLLTWSDKLQKLDFQ   51 (93)
Q Consensus         2 ll~rEf~l~~~lrLWDt~la~~~~~~~~~~yvc~A~L~~~r~~L~~~dF~   51 (93)
                      +|+++||++.++||||++|+++.++ .  +-+.+|++...++++..++.+
T Consensus       386 lF~~~~p~e~~lriwD~lf~eg~~~-l--~~~~~~~l~~~~~~l~~~~~~  432 (496)
T COG5210         386 LFVREFPLEYALRIWDCLFLEGSSM-L--FQLALAILKLLRDKLLKLDSD  432 (496)
T ss_pred             HHHhcCCHHHHHHHHHHHHHhccHH-H--HHHHHHHHHhhhhhhhccCch
Confidence            5789999999999999999998765 4  445555666666666544443

>KOG2197 consensus Ypt/Rab-specific GTPase-activating protein GYP7 and related proteins [Signal transduction mechanisms]

Probab=97.46  E-value=0.00038  Score=56.71  Aligned_cols=79  Identities=20%  Similarity=0.273  Sum_probs=61.5

Q ss_pred             ccccccCchhHHHHHHhhhccCCCcchHHHHHHHHHHHHHHHHHh--hCCHHHHHHHhcCCCCCCCChHHHHHHHHHHHH
Q 034493            2 VLFYQIPFHLVTRLWDTYLAEGDALPDFLVYIFASFLLTWSDKLQ--KLDFQEMVMFLQHLPTHAWTHQELEMVLSRAYM   79 (93)
Q Consensus         2 ll~rEf~l~~~lrLWDt~la~~~~~~~~~~yvc~A~L~~~r~~L~--~~dF~~~~~~LQ~lp~~~w~~~di~~ll~~A~~   79 (93)
                      .+.|||..+++++||+..+++.... +||+|+|.|++..-++.|+  .++|.++++....++...    |...++..|..
T Consensus       365 ~frrEf~~ed~l~LWEvlw~~~~~~-~f~~~~~~~~l~~~~~~l~~~~~~~~e~l~~i~~~~~~~----d~~~~~~~A~~  439 (488)
T KOG2197|consen  365 PFRREFEFEDSLRLWEVLWTDLPSP-HFHLYVAPAILNKDPQTLMEQGKSFNEVLKHVNLLSEKA----DVLWVLVRAEA  439 (488)
T ss_pred             ccccccccccHHHHHHHHHhcCccc-hHHHHHHHhhhhcchHHHHhcCccchhHHhhcccccccc----hhhhHHHHHHH
Confidence            4679999999999999999986555 9999999999999888885  577888888666665442    36667777766


Q ss_pred             HHHhcc
Q 034493           80 WHSMFN   85 (93)
Q Consensus        80 ~~~~~~   85 (93)
                      .+..+.
T Consensus       440 ~~~~~k  445 (488)
T KOG2197|consen  440 LERQNK  445 (488)
T ss_pred             HHHHHH
Confidence            555443

>KOG1102 consensus Rab6 GTPase activator GAPCenA and related TBC domain proteins [General function prediction only]

Probab=96.45  E-value=0.009  Score=47.43  Aligned_cols=62  Identities=26%  Similarity=0.515  Sum_probs=54.5

Q ss_pred             ccccccCchhHHHHHHhhhccCCCcchHHHHHHHHHHHHHHHHHhhCCHHHHHHHhcCCCCCCCC
Q 034493            2 VLFYQIPFHLVTRLWDTYLAEGDALPDFLVYIFASFLLTWSDKLQKLDFQEMVMFLQHLPTHAWT   66 (93)
Q Consensus         2 ll~rEf~l~~~lrLWDt~la~~~~~~~~~~yvc~A~L~~~r~~L~~~dF~~~~~~LQ~lp~~~w~   66 (93)
                      +++..+|++.+.|+||.++.++   .....-+..|++....+.+.+++|...+.++++-+..+-.
T Consensus       312 ~f~~k~p~~~~~ri~d~~~~~g---~~i~~~~~~~l~~~~~~~~~~~~~e~~~~~l~~~~~~~~~  373 (397)
T KOG1102|consen  312 LFAAKFPLELVLRIWDALFVEG---VSILFRFSLALLKHKADDLLDLDFESLLSYLRVDLPKSYD  373 (397)
T ss_pred             eeeccccHHHHHHHhHHHHHhc---hHHHHHHHHHHhhhhhHHHhhccHHHHHHHHhcccHhhcC
Confidence            4567899999999999999998   3678889999999999999999999999999998765533

>KOG2058 consensus Ypt/Rab GTPase activating protein [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.10  E-value=0.01  Score=48.07  Aligned_cols=58  Identities=21%  Similarity=0.377  Sum_probs=44.5

Q ss_pred             cccccCchhHHHHHHhhhccCCCcchHHHHHHHHHHHHHHHHHh-hCCHHHHHHHhcCCCCC
Q 034493            3 LFYQIPFHLVTRLWDTYLAEGDALPDFLVYIFASFLLTWSDKLQ-KLDFQEMVMFLQHLPTH   63 (93)
Q Consensus         3 l~rEf~l~~~lrLWDt~la~~~~~~~~~~yvc~A~L~~~r~~L~-~~dF~~~~~~LQ~lp~~   63 (93)
                      ++--.|.+.++||||++|.+|.   ...+-+++|+++..++.++ ..+=.++...++.++..
T Consensus       327 f~d~lP~~t~LrIwD~~f~eGs---kvlfr~Alai~k~~ee~il~~~~~~~i~~~~~~~~~~  385 (436)
T KOG2058|consen  327 FVDILPSETVLRIWDCLFYEGS---KVLFRVALAILKKHEEEILKEDSSKEILRVLPDLTKR  385 (436)
T ss_pred             hcccccHHHHHHHHHHHHhccc---HHHHHHHHHHHHHhHHHHhcCCCHHHHHHHHHHHHHH
Confidence            4455788999999999999975   4566699999999999985 45556677777665543

>KOG3636 consensus Uncharacterized conserved protein, contains TBC and Rhodanese domains [General function prediction only]

Probab=95.81  E-value=0.019  Score=47.36  Aligned_cols=77  Identities=16%  Similarity=0.392  Sum_probs=58.6

Q ss_pred             ccccccCchhHHHHHHhhhccCCCcchHHHHHHHHHHHHHHHHHhh---CCHHHHHHHhcCCCCCCCChHHHHHHHHHHH
Q 034493            2 VLFYQIPFHLVTRLWDTYLAEGDALPDFLVYIFASFLLTWSDKLQK---LDFQEMVMFLQHLPTHAWTHQELEMVLSRAY   78 (93)
Q Consensus         2 ll~rEf~l~~~lrLWDt~la~~~~~~~~~~yvc~A~L~~~r~~L~~---~dF~~~~~~LQ~lp~~~w~~~di~~ll~~A~   78 (93)
                      ||+--...+.+..+||-|+-..+.|.  .+|..+-+|..-|++|++   ..-.++++||.|.|.. -+-.||+...+-|.
T Consensus       192 LFas~~Stev~~a~WdlY~qqaDPF~--vffLaliiLiNake~ILq~~sdsKEe~ikfLenmp~~-L~~eDvpDffsLAq  268 (669)
T KOG3636|consen  192 LFASSMSTEVCHALWDLYIQQADPFL--VFFLALIILINAKEEILQVKSDSKEEAIKFLENMPAQ-LSVEDVPDFFSLAQ  268 (669)
T ss_pred             HHHHhhhHHHHHHHHHHHHhcCCcee--hHHHHHHHhcccHHHHhhhccccHHHHHHHHHcCchh-cccccchhHHHHHH
Confidence            45556678899999999999998873  334556667778888854   4558999999999975 35667888888886


Q ss_pred             HHH
Q 034493           79 MWH   81 (93)
Q Consensus        79 ~~~   81 (93)
                      .+.
T Consensus       269 yY~  271 (669)
T KOG3636|consen  269 YYS  271 (669)
T ss_pred             HHh
Confidence            654

>KOG2595 consensus Predicted GTPase activator protein [Signal transduction mechanisms]

Probab=93.24  E-value=0.41  Score=38.26  Aligned_cols=68  Identities=19%  Similarity=0.413  Sum_probs=50.8

Q ss_pred             CchhHHHHHHhhhccCCCcchHHHHHHHHHHHHHHHHHhh--CCHHHHHHHhcCCCCCCCChHHHHHHHHHHHHHHH
Q 034493            8 PFHLVTRLWDTYLAEGDALPDFLVYIFASFLLTWSDKLQK--LDFQEMVMFLQHLPTHAWTHQELEMVLSRAYMWHS   82 (93)
Q Consensus         8 ~l~~~lrLWDt~la~~~~~~~~~~yvc~A~L~~~r~~L~~--~dF~~~~~~LQ~lp~~~w~~~di~~ll~~A~~~~~   82 (93)
                      ++..++|++|-++|.+.-   ..+|||+|++..-|..|++  .|.+-.=..|+.+|..-    -++.+|+++...-.
T Consensus       232 ~~~~vvRlfD~Flas~pl---~piyv~A~vvL~r~~eIl~~~~dms~~H~lLs~iPq~l----p~d~lik~s~~~i~  301 (395)
T KOG2595|consen  232 DIRIVVRLFDFFLASHPL---LPIYVYAAVVLYRRSEILKCDCDMSLLHGLLSTIPQDL----PYDTLIKESVLLIT  301 (395)
T ss_pred             hHHHHHHHHHHHHhcCcc---hhHHHHHHHhhhhHHHHHHHHhhhHHHHHHHHhCcccc----CHHHHHHHHHHHHh
Confidence            356899999999997542   6899999999999999865  44555566788888432    27888888754433

>KOG2222 consensus Uncharacterized conserved protein, contains TBC, SH3 and RUN domains [Signal transduction mechanisms; General function prediction only]

Probab=87.37  E-value=1.2  Score=37.55  Aligned_cols=72  Identities=14%  Similarity=0.343  Sum_probs=53.3

Q ss_pred             cccccCchhHHHHHHhhhccCCCcchHHHHHHHHHHHHHHHHHhh-----CCHHHHHHHhcCCCCCCCChHHHHHHHHHH
Q 034493            3 LFYQIPFHLVTRLWDTYLAEGDALPDFLVYIFASFLLTWSDKLQK-----LDFQEMVMFLQHLPTHAWTHQELEMVLSRA   77 (93)
Q Consensus         3 l~rEf~l~~~lrLWDt~la~~~~~~~~~~yvc~A~L~~~r~~L~~-----~dF~~~~~~LQ~lp~~~w~~~di~~ll~~A   77 (93)
                      |+.-|.+...+|+||-+|-++.-.   .+-+..+||+.-...|.+     ..-.++...|..+|..-   .|++.++.+|
T Consensus       341 f~nv~~~killriwd~~fy~g~i~---ifql~i~ilkmkeqdi~~iaettensa~if~als~ip~~v---tdve~l~~~~  414 (848)
T KOG2222|consen  341 FANVFHMKILLRIWDFFFYEGGIN---IFQLIIGILKMKEQDIKEIAETTENSADIFNALSDIPAEV---TDVEKLFEQA  414 (848)
T ss_pred             HHHHHHHHHHHHHHHhheecCcch---hHHHHHHHHHhhHHHHHHHHHhcccHHHHHHHHHhCCchh---hhHHHHHHHH
Confidence            445566788999999999886432   345777888877777754     46678889999999754   6799998888


Q ss_pred             HHH
Q 034493           78 YMW   80 (93)
Q Consensus        78 ~~~   80 (93)
                      -.+
T Consensus       415 ~~~  417 (848)
T KOG2222|consen  415 GEF  417 (848)
T ss_pred             hhc
Confidence            543

>KOG4436 consensus Predicted GTPase activator NB4S/EVI5 (contains TBC domain)/Calmodulin-binding protein Pollux (contains PTB and TBC domains) [General function prediction only]

Probab=82.90  E-value=3.6  Score=36.26  Aligned_cols=74  Identities=26%  Similarity=0.452  Sum_probs=56.9

Q ss_pred             ccccccCchhHHHHHHhhhccCCCcchHHHHHHHHHHHHHHHHHh-hCCHHHHHHHhcCCCCCCCChHHHHHHHHHHHH
Q 034493            2 VLFYQIPFHLVTRLWDTYLAEGDALPDFLVYIFASFLLTWSDKLQ-KLDFQEMVMFLQHLPTHAWTHQELEMVLSRAYM   79 (93)
Q Consensus         2 ll~rEf~l~~~lrLWDt~la~~~~~~~~~~yvc~A~L~~~r~~L~-~~dF~~~~~~LQ~lp~~~w~~~di~~ll~~A~~   79 (93)
                      +|+-.||+.-+-|+.|..|-.+-..   .+-+..++|...+..|+ ...|..|+.|+|+.-+.. ...+++.|+.+-+.
T Consensus       750 ~fasQf~lGfvarvfd~~flq~tev---ifK~a~~llsv~k~~l~e~dn~e~i~d~~k~~~p~~-~~~emeki~~qvf~  824 (948)
T KOG4436|consen  750 VFASQFPLGFVARVFDLIFLQGTEV---IFKVALSLLSVHKQLLLEKDNFEEIVDFLKTTLPKM-EHTEMEKIIKQVFE  824 (948)
T ss_pred             HHHhhCcchHHHHHHHHHHhhccch---hhhhHHHHHHhhHHHHHhhhhHHHHHHHHHHhhhhh-hHHHHHHHHHHHHh
Confidence            4677899999999999999986543   56688899988888885 466999999999964432 34556777766554

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	93
2qfz_A	345	Crystal Structure Of Human Tbc1 Domain Family Membe		7e-15
2g77_A	410	Crystal Structure Of Gyp1 Tbc Domain In Complex Wit		2e-14
3dzx_A	346	Crystal Structure Of The Rabgap Domain Of Human Tbc		4e-14
1fkm_A	396	Crystal Structure Of The YptRAB-Gap Domain Of Gyp1p		3e-13

>pdb|2QFZ|A Chain A, Crystal Structure Of Human Tbc1 Domain Family Member 22a Length = 345

Iteration: 1
 Score = 75.5 bits (184), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 34/90 (37%), Positives = 57/90 (63%), Gaps = 1/90 (1%)
Query: 2   VLFYQIPFHLVTRLWDTYLAEGDALPDFLVYIFASFLLTWSDK-LQKLDFQEMVMFLQHL 60
           +L  ++P     RLWDTY +E D    F +Y+ A+FL+ W  + L++ DFQE+++FLQ+L
Sbjct: 253 LLMREVPLRCTIRLWDTYQSEPDGFSHFHLYVCAAFLVRWRKEILEEKDFQELLLFLQNL 312
Query: 61  PTHAWTHQELEMVLSRAYMWHSMFNNCPSH 90
           PT  W  +++ ++L+ AY     F + P+H
Sbjct: 313 PTAHWDDEDISLLLAEAYRLKFAFADAPNH 342

>pdb|2G77|A Chain A, Crystal Structure Of Gyp1 Tbc Domain In Complex With Rab33 Gtpase Bound To Gdp And Alf3 Length = 410

Iteration: 1
 Score = 73.6 bits (179), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 31/74 (41%), Positives = 51/74 (68%)
Query: 17  DTYLAEGDALPDFLVYIFASFLLTWSDKLQKLDFQEMVMFLQHLPTHAWTHQELEMVLSR 76
           D+      +L +F V++ A+FL+ WSD+L ++DFQE + FLQ+ PT  WT  ++EM+LS 
Sbjct: 335 DSGKMRQSSLNEFHVFVCAAFLIKWSDQLMEMDFQETITFLQNPPTKDWTETDIEMLLSE 394
Query: 77  AYMWHSMFNNCPSH 90
           A++W S++ +  SH
Sbjct: 395 AFIWQSLYKDATSH 408

>pdb|3DZX|A Chain A, Crystal Structure Of The Rabgap Domain Of Human Tbc1d22b Length = 346

Iteration: 1
 Score = 72.8 bits (177), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 34/90 (37%), Positives = 56/90 (62%), Gaps = 1/90 (1%)
Query: 2   VLFYQIPFHLVTRLWDTYLAEGDALPDFLVYIFASFLLTWSDK-LQKLDFQEMVMFLQHL 60
           +L  ++P     RLWDTY +E +    F +Y+ A+FL+ W  + L + DFQ ++M LQ+L
Sbjct: 254 LLMRELPLRCTIRLWDTYQSEPEGFSHFHLYVCAAFLIKWRKEILDEEDFQGLLMLLQNL 313
Query: 61  PTHAWTHQELEMVLSRAYMWHSMFNNCPSH 90
           PT  W ++E+ ++L+ AY    MF + P+H
Sbjct: 314 PTIHWGNEEIGLLLAEAYRLKYMFADAPNH 343

>pdb|1FKM|A Chain A, Crystal Structure Of The YptRAB-Gap Domain Of Gyp1p Length = 396

Iteration: 1
 Score = 70.1 bits (170), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 29/66 (43%), Positives = 47/66 (71%)
Query: 25  ALPDFLVYIFASFLLTWSDKLQKLDFQEMVMFLQHLPTHAWTHQELEMVLSRAYMWHSMF 84
           +L +F V++ A+FL+ WSD+L + DFQE + FLQ+ PT  WT  ++E +LS A++W S++
Sbjct: 323 SLNEFHVFVCAAFLIKWSDQLXEXDFQETITFLQNPPTKDWTETDIEXLLSEAFIWQSLY 382
Query: 85  NNCPSH 90
            +  SH
Sbjct: 383 KDATSH 388

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	93
2qfz_A	345	TBC1 domain family member 22A; RAB-GAP, GTPase act	8e-21
1fkm_A	396	Protein (GYP1P), ORF YOR070C; GAP, YPT/RAB protein	1e-16
3qwl_A	294	TBC1 domain family member 7; RAB GTPase activation	3e-14
2qq8_A	334	TBC1 domain family member 14; structural genomics	3e-07
3qye_A	331	TBC1 domain family member 1; rabgap, RAB, myocytes	4e-05
3hzj_A	310	Rabgap1L, RAB GTPase-activating protein 1-like; st	1e-04

>2qfz_A TBC1 domain family member 22A; RAB-GAP, GTPase activator, structural genomics, structural genomics consortium, SGC, hydrolase activator; 2.10A {Homo sapiens} PDB: 3dzx_A Length = 345

 Score = 83.1 bits (205), Expect = 8e-21
 Identities = 33/86 (38%), Positives = 54/86 (62%), Gaps = 1/86 (1%)

Query: 7   IPFHLVTRLWDTYLAEGDALPDFLVYIFASFLLTWSDK-LQKLDFQEMVMFLQHLPTHAW 65
           +P     RLWDTY +E D    F +Y+ A+FL+ W  + L++ DFQE+++FLQ+LPT  W
Sbjct: 258 VPLRCTIRLWDTYQSEPDGFSHFHLYVCAAFLVRWRKEILEEKDFQELLLFLQNLPTAHW 317

Query: 66  THQELEMVLSRAYMWHSMFNNCPSHL 91
             +++ ++L+ AY     F + P+H 
Sbjct: 318 DDEDISLLLAEAYRLKFAFADAPNHY 343

>1fkm_A Protein (GYP1P), ORF YOR070C; GAP, YPT/RAB protein, vesicular trafficking, endocytosis, hydrolase, GTPase activation; 1.90A {Saccharomyces cerevisiae} SCOP: a.69.2.1 a.69.2.1 PDB: 2g77_A* Length = 396

 Score = 72.0 bits (176), Expect = 1e-16
 Identities = 31/88 (35%), Positives = 52/88 (59%)

Query: 4   FYQIPFHLVTRLWDTYLAEGDALPDFLVYIFASFLLTWSDKLQKLDFQEMVMFLQHLPTH 63
                      + D+      +L +F V++ A+FL+ WSD+L ++DFQE + FLQ+ PT 
Sbjct: 302 TALSNMTPNNAVEDSGKMRQSSLNEFHVFVCAAFLIKWSDQLMEMDFQETITFLQNPPTK 361

Query: 64  AWTHQELEMVLSRAYMWHSMFNNCPSHL 91
            WT  ++EM+LS A++W S++ +  SH 
Sbjct: 362 DWTETDIEMLLSEAFIWQSLYKDATSHW 389

>3qwl_A TBC1 domain family member 7; RAB GTPase activation, structural genomics consortium, TBC D SGC, hydrolase activator; 1.90A {Homo sapiens} Length = 294

 Score = 64.7 bits (157), Expect = 3e-14
 Identities = 19/94 (20%), Positives = 39/94 (41%), Gaps = 10/94 (10%)

Query: 1   MVLF-YQIPFHLVTRLWDTYLAEGDALPDFLVYIFASFLLTWSDKLQKL-DFQEMVMFLQ 58
              F   +P   + R+WD  ++        LV++    LLT+  K+  L   +++  FL+
Sbjct: 209 KRCFAGCLPESSLQRVWDKVVSGS---CKILVFVAVEILLTFKIKVMALNSAEKITKFLE 265

Query: 59  HLPTHAWTHQELEMVLSRAYMWHSMFNNCPSHLA 92
           ++P         + ++S+A          P H +
Sbjct: 266 NIP-----QDSSDAIVSKAIDLWHKHCGTPVHSS 294

>2qq8_A TBC1 domain family member 14; structural genomics consortium, RAB-GAP, SGC, GTPase activation, hydrolase activator; 2.00A {Homo sapiens} Length = 334

 Score = 45.2 bits (107), Expect = 3e-07
 Identities = 20/76 (26%), Positives = 32/76 (42%), Gaps = 4/76 (5%)

Query: 1   MVLF-YQIPFHLVTRLWDTYLAEGDALPDFLVYIFASFLLTWSDKLQKLDFQEMVMFLQH 59
             L+   +P  L  R+WD +  +G+   +FL       L  + D L K+DF  M  FL  
Sbjct: 235 FTLYSKSLPLDLACRIWDVFCRDGE---EFLFRTALGILKLFEDILTKMDFIHMAQFLTR 291

Query: 60  LPTHAWTHQELEMVLS 75
           LP      +    + +
Sbjct: 292 LPEDLPAEELFASIAT 307

>3qye_A TBC1 domain family member 1; rabgap, RAB, myocytes, hydrolase activator; 2.20A {Homo sapiens} PDB: 3qyb_A Length = 331

 Score = 39.4 bits (92), Expect = 4e-05
 Identities = 14/71 (19%), Positives = 29/71 (40%), Gaps = 5/71 (7%)

Query: 1   MVLF-YQIPFHLVTRLWDTYLAEGDALPDFLVYIFASFLLTWSDK-LQKLDFQEMVMFLQ 58
           + +F  Q P   V R++D    +G    + +  +  S L +     LQ  + + +V F++
Sbjct: 230 LTMFASQFPLGFVARVFDMIFLQG---TEVIFKVALSLLGSHKPLILQHENLETIVDFIK 286

Query: 59  HLPTHAWTHQE 69
               +    Q 
Sbjct: 287 STLPNLGLVQM 297

>3hzj_A Rabgap1L, RAB GTPase-activating protein 1-like; structural genomics consortium, SGC, alternative splicing, GTPase activation, phosphoprotein; 2.30A {Homo sapiens} Length = 310

 Score = 37.8 bits (88), Expect = 1e-04
 Identities = 17/80 (21%), Positives = 35/80 (43%), Gaps = 5/80 (6%)

Query: 1   MVLF-YQIPFHLVTRLWDTYLAEGDALPDFLVYIFASFLLTWSDKLQKLDFQEMVMFLQH 59
           + LF  + P  +V  + D  L EG    + + ++  + L T  + L + DF+  + F + 
Sbjct: 196 LTLFTAKFPLCMVFHIIDLLLCEG---LNIIFHVALALLKTSKEDLLQADFEGALKFFRV 252

Query: 60  -LPTHAWTHQELEMVLSRAY 78
            LP      +    ++ +A 
Sbjct: 253 QLPKRYRAEENARRLMEQAC 272

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	93
2qfz_A	345	TBC1 domain family member 22A; RAB-GAP, GTPase act	99.91
1fkm_A	396	Protein (GYP1P), ORF YOR070C; GAP, YPT/RAB protein	99.91
3qwl_A	294	TBC1 domain family member 7; RAB GTPase activation	99.81
3hzj_A	310	Rabgap1L, RAB GTPase-activating protein 1-like; st	99.64
3qye_A	331	TBC1 domain family member 1; rabgap, RAB, myocytes	99.61
2qq8_A	334	TBC1 domain family member 14; structural genomics	99.6
4hl4_A	292	TBC1 domain family member 20; rabgap, RAB1B, hydro	99.57

>2qfz_A TBC1 domain family member 22A; RAB-GAP, GTPase activator, structural genomics, structural genomics consortium, SGC, hydrolase activator; 2.10A {Homo sapiens} PDB: 3dzx_A

Probab=99.91  E-value=2.1e-24  Score=162.80  Aligned_cols=93  Identities=35%  Similarity=0.811  Sum_probs=80.8

Q ss_pred             CccccccCchhHHHHHHhhhccCCCcchHHHHHHHHHHHHHHHHHh-hCCHHHHHHHhcCCCCCCCChHHHHHHHHHHHH
Q 034493            1 MVLFYQIPFHLVTRLWDTYLAEGDALPDFLVYIFASFLLTWSDKLQ-KLDFQEMVMFLQHLPTHAWTHQELEMVLSRAYM   79 (93)
Q Consensus         1 ~ll~rEf~l~~~lrLWDt~la~~~~~~~~~~yvc~A~L~~~r~~L~-~~dF~~~~~~LQ~lp~~~w~~~di~~ll~~A~~   79 (93)
                      .+|+||||+++++||||.+|++++++..+++|||+|+|..+|++|+ .+||++++.+||++|+.+|++.|++.++++|+.
T Consensus       252 ~lF~~~~p~~~~lrlWD~~l~~g~~~~~~~~~v~~AiL~~~~~~ll~~~d~~~il~~L~~~p~~~~~~~di~~ll~~A~~  331 (345)
T 2qfz_A          252 NLLMREVPLRCTIRLWDTYQSEPDGFSHFHLYVCAAFLVRWRKEILEEKDFQELLLFLQNLPTAHWDDEDISLLLAEAYR  331 (345)
T ss_dssp             TTTTTTSCHHHHHHHHHHHTTSTTTTTTHHHHHHHHHHHHTHHHHHHCCCHHHHHHHHTSCSCTTCCHHHHHHHHHHHHH
T ss_pred             HHHcccCCHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHcCCCcCCchhHHHHHHHHHHH
Confidence            4789999999999999999999998877999999999999999987 599999999999999999999999999999999


Q ss_pred             HHHhccCCcccccC
Q 034493           80 WHSMFNNCPSHLAS   93 (93)
Q Consensus        80 ~~~~~~~~~~~~~~   93 (93)
                      ++.+|.++|+||.+
T Consensus       332 l~~~~~~~~~h~~~  345 (345)
T 2qfz_A          332 LKFAFADAPNHYKK  345 (345)
T ss_dssp             HHHHC---------
T ss_pred             HHHHHHhhHhhccC
Confidence            99999999999863

>1fkm_A Protein (GYP1P), ORF YOR070C; GAP, YPT/RAB protein, vesicular trafficking, endocytosis, hydrolase, GTPase activation; 1.90A {Saccharomyces cerevisiae} SCOP: a.69.2.1 a.69.2.1 PDB: 2g77_A*

Probab=99.91  E-value=1.6e-24  Score=167.49  Aligned_cols=91  Identities=43%  Similarity=0.910  Sum_probs=80.7

Q ss_pred             CccccccCchhHHHHHHhhhccC---------------------------------------------------C-----
Q 034493            1 MVLFYQIPFHLVTRLWDTYLAEG---------------------------------------------------D-----   24 (93)
Q Consensus         1 ~ll~rEf~l~~~lrLWDt~la~~---------------------------------------------------~-----   24 (93)
                      .||+||||+++++||||+||+++                                                   +     
T Consensus       239 ~LF~~~~p~~~vlrlWD~~l~eg~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~  318 (396)
T 1fkm_A          239 CLLMREFQMGTVIRMWDTYLSETSQEVTSSYSMSSNDIKPPVTPTEPRVASFVTPTKDFQSPTTALSNMTPNNAVEDSGK  318 (396)
T ss_dssp             TTTGGGSCHHHHHHHHHHHHHHHC--------------------------------------------------------
T ss_pred             HHHHhhCCHHHHHHHHHHHHHCCCccccchhhhhcccccCCccccccccccccccccccccccccccccccccccccchh
Confidence            47899999999999999999987                                                   3     


Q ss_pred             ----CcchHHHHHHHHHHHHHHHHHhhCCHHHHHHHhcCCCCCCCChHHHHHHHHHHHHHHHhccCCcccc
Q 034493           25 ----ALPDFLVYIFASFLLTWSDKLQKLDFQEMVMFLQHLPTHAWTHQELEMVLSRAYMWHSMFNNCPSHL   91 (93)
Q Consensus        25 ----~~~~~~~yvc~A~L~~~r~~L~~~dF~~~~~~LQ~lp~~~w~~~di~~ll~~A~~~~~~~~~~~~~~   91 (93)
                          ++.++++|||+|+|..+|++|+++||+++|++||++|+.+|++.|++.++++|+.++++|.++++|-
T Consensus       319 ~~~~~~~~~~~~v~~AlL~~~r~~Ll~~df~~~l~~L~~~p~~~~~~~di~~ll~~A~~l~~~~~~~~~~~  389 (396)
T 1fkm_A          319 MRQSSLNEFHVFVCAAFLIKWSDQLMEMDFQETITFLQNPPTKDWTETDIEMLLSEAFIWQSLYKDATSHW  389 (396)
T ss_dssp             ----CHHHHHHHHHHHHHHHTHHHHTTCCHHHHHHHHTSCSCTTCCHHHHHHHHHHHHHHHHHHC------
T ss_pred             ccccchHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHhcCCCCCcccccHHHHHHHHHHHHHHHhccHHHH
Confidence                4458999999999999999999999999999999999999999999999999999999999999993

>3qwl_A TBC1 domain family member 7; RAB GTPase activation, structural genomics consortium, TBC D SGC, hydrolase activator; 1.90A {Homo sapiens}

Probab=99.81  E-value=4.7e-20  Score=138.64  Aligned_cols=82  Identities=22%  Similarity=0.410  Sum_probs=76.9

Q ss_pred             CccccccCchhHHHHHHhhhccCCCcchHHHHHHHHHHHHHHHHHhhCCH-HHHHHHhcCCCCCCCChHHHHHHHHHHHH
Q 034493            1 MVLFYQIPFHLVTRLWDTYLAEGDALPDFLVYIFASFLLTWSDKLQKLDF-QEMVMFLQHLPTHAWTHQELEMVLSRAYM   79 (93)
Q Consensus         1 ~ll~rEf~l~~~lrLWDt~la~~~~~~~~~~yvc~A~L~~~r~~L~~~dF-~~~~~~LQ~lp~~~w~~~di~~ll~~A~~   79 (93)
                      .+|+||||+++++||||+||+++.   ++++|||+|+|+.+|++|+++|| ++++++||++|+.+     ++.++++|+.
T Consensus       210 ~lF~~~~p~~~vlRlWD~~~~~~~---~~l~~valAiL~~~r~~Ll~~~~~~~il~~Lq~lp~~d-----i~~ll~~A~~  281 (294)
T 3qwl_A          210 RCFAGCLPESSLQRVWDKVVSGSC---KILVFVAVEILLTFKIKVMALNSAEKITKFLENIPQDS-----SDAIVSKAID  281 (294)
T ss_dssp             STTTTTSCHHHHHHHHHHHHTTCS---THHHHHHHHHHHHTHHHHHHCCSHHHHHHHHTTCCSTT-----HHHHHHHHHH
T ss_pred             HHhccCCCHHHHHHHHHHHHhCCc---hHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHcCCccc-----HHHHHHHHHH
Confidence            378999999999999999999543   77999999999999999999999 88899999999987     9999999999


Q ss_pred             HHHhccCCccc
Q 034493           80 WHSMFNNCPSH   90 (93)
Q Consensus        80 ~~~~~~~~~~~   90 (93)
                      +...|.++|.|
T Consensus       282 l~~~~~~~~~~  292 (294)
T 3qwl_A          282 LWHKHCGTPVH  292 (294)
T ss_dssp             HHHHHHCCCCC
T ss_pred             HHHHcCCCCcc
Confidence            99999999998

>3hzj_A Rabgap1L, RAB GTPase-activating protein 1-like; structural genomics consortium, SGC, alternative splicing, GTPase activation, phosphoprotein; 2.30A {Homo sapiens}

Probab=99.64  E-value=1.1e-16  Score=118.92  Aligned_cols=77  Identities=19%  Similarity=0.356  Sum_probs=71.8

Q ss_pred             ccccccCchhHHHHHHhhhccCCCcchHHHHHHHHHHHHHHHHHhhCCHHHHHHHhc-CCCCCCCChHHHHHHHHHHHHH
Q 034493            2 VLFYQIPFHLVTRLWDTYLAEGDALPDFLVYIFASFLLTWSDKLQKLDFQEMVMFLQ-HLPTHAWTHQELEMVLSRAYMW   80 (93)
Q Consensus         2 ll~rEf~l~~~lrLWDt~la~~~~~~~~~~yvc~A~L~~~r~~L~~~dF~~~~~~LQ-~lp~~~w~~~di~~ll~~A~~~   80 (93)
                      +|+++||++.++||||.++++|.   .+++|||+|++...|+.|+++||++++++|| ++|...|++.|++.++++|+.+
T Consensus       198 lF~~~lp~~~~~riwD~~l~~g~---~~l~~v~lail~~~~~~Ll~~d~~~~l~~l~~~lp~~~~~~~d~~~ll~~A~~l  274 (310)
T 3hzj_A          198 LFTAKFPLCMVFHIIDLLLCEGL---NIIFHVALALLKTSKEDLLQADFEGALKFFRVQLPKRYRAEENARRLMEQACNI  274 (310)
T ss_dssp             TTTTTSCHHHHHHHHHHHHHHCT---THHHHHHHHHHHHTHHHHHTCCHHHHHHHHHTHHHHTTCSHHHHHHHHHHHHHS
T ss_pred             HHhccCCHHHHHHHHHHHHHCCc---HHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHhCcccccccccHHHHHHHHHhc
Confidence            68999999999999999999986   4589999999999999999999999999998 6898888999999999999887


Q ss_pred             H
Q 034493           81 H   81 (93)
Q Consensus        81 ~   81 (93)
                      +
T Consensus       275 ~  275 (310)
T 3hzj_A          275 K  275 (310)
T ss_dssp             C
T ss_pred             C
Confidence            4

>3qye_A TBC1 domain family member 1; rabgap, RAB, myocytes, hydrolase activator; 2.20A {Homo sapiens} PDB: 3qyb_A

Probab=99.61  E-value=8.3e-16  Score=115.00  Aligned_cols=77  Identities=14%  Similarity=0.296  Sum_probs=69.6

Q ss_pred             ccccccCchhHHHHHHhhhccCCCcchHHHHHHHHHHHHHHHHHhhC-CHHHHHHHhcCCCCCCCChHHHHHHHHHHHHH
Q 034493            2 VLFYQIPFHLVTRLWDTYLAEGDALPDFLVYIFASFLLTWSDKLQKL-DFQEMVMFLQHLPTHAWTHQELEMVLSRAYMW   80 (93)
Q Consensus         2 ll~rEf~l~~~lrLWDt~la~~~~~~~~~~yvc~A~L~~~r~~L~~~-dF~~~~~~LQ~lp~~~w~~~di~~ll~~A~~~   80 (93)
                      +|+++||++.++||||.+|++|..   +++|||+|+|...|+.|++. ||++++.+||+.++. |++.|++.++++|+.+
T Consensus       232 lF~~~lp~~~~lrlwD~~l~~g~~---~l~~valaiL~~~~~~ll~~~~~~~il~~l~~~~p~-~~~~di~~li~~A~~l  307 (331)
T 3qye_A          232 MFASQFPLGFVARVFDMIFLQGTE---VIFKVALSLLGSHKPLILQHENLETIVDFIKSTLPN-LGLVQMEKTINQVFEM  307 (331)
T ss_dssp             TTTTTSCHHHHHHHHHHHHHHCTT---HHHHHHHHHHHHTHHHHHTCCSHHHHHHHHHHTTTC-CCHHHHHHHHHHHHHC
T ss_pred             HhhhhCCHHHHHHHHHHHHHCCcH---HHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhhCCC-CCHHHHHHHHHHHHhC
Confidence            789999999999999999999764   69999999999999999886 999999999995543 7899999999999877


Q ss_pred             HH
Q 034493           81 HS   82 (93)
Q Consensus        81 ~~   82 (93)
                      +.
T Consensus       308 ~~  309 (331)
T 3qye_A          308 DI  309 (331)
T ss_dssp             CC
T ss_pred             Cc
Confidence            64

>2qq8_A TBC1 domain family member 14; structural genomics consortium, RAB-GAP, SGC, GTPase activation, hydrolase activator; 2.00A {Homo sapiens}

Probab=99.60  E-value=1.5e-15  Score=114.49  Aligned_cols=76  Identities=26%  Similarity=0.501  Sum_probs=68.6

Q ss_pred             CccccccCchhHHHHHHhhhccCCCcchHHHHHHHHHHHHHHHHHhhCCHHHHHHHhcCCCCCCCChHHHHHHHHHHHHH
Q 034493            1 MVLFYQIPFHLVTRLWDTYLAEGDALPDFLVYIFASFLLTWSDKLQKLDFQEMVMFLQHLPTHAWTHQELEMVLSRAYMW   80 (93)
Q Consensus         1 ~ll~rEf~l~~~lrLWDt~la~~~~~~~~~~yvc~A~L~~~r~~L~~~dF~~~~~~LQ~lp~~~w~~~di~~ll~~A~~~   80 (93)
                      .+|+++||++.++||||.+|+++.   .+++|||+|+|...++.|+++||++++.+||++|..    .|++.+++.|..+
T Consensus       236 tlF~~~lp~~~~lriWD~~l~eg~---~~l~~valaiL~~~~~~Ll~~d~~~il~~L~~lp~~----~d~~~l~~~a~~l  308 (334)
T 2qq8_A          236 TLYSKSLPLDLACRIWDVFCRDGE---EFLFRTALGILKLFEDILTKMDFIHMAQFLTRLPED----LPAEELFASIATI  308 (334)
T ss_dssp             TTTTTTSCHHHHHHHHHHHHHHCH---HHHHHHHHHHHHHTHHHHHTCCHHHHHHHHHSCCTT----CCHHHHHHHHHHC
T ss_pred             HHhcccCCHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhCCCc----CCHHHHHHHHHHc
Confidence            378999999999999999999874   779999999999999999999999999999999985    2389999999987


Q ss_pred             HHh
Q 034493           81 HSM   83 (93)
Q Consensus        81 ~~~   83 (93)
                      +-+
T Consensus       309 ~~~  311 (334)
T 2qq8_A          309 QMQ  311 (334)
T ss_dssp             CCE
T ss_pred             cCc
Confidence            644

>4hl4_A TBC1 domain family member 20; rabgap, RAB1B, hydrolase activator, catalytic domain, F GTPase-activating proteins, RAB GTP-binding protein, GTP HY; 2.20A {Homo sapiens} PDB: 4hlq_A*

Probab=99.57  E-value=7.1e-15  Score=108.72  Aligned_cols=77  Identities=23%  Similarity=0.299  Sum_probs=69.4

Q ss_pred             ccccccC-chhHHHHHHhhhccCCCcchHHHHHHHHHHHHHHHHHhhC--CHHHHHHHhcCCCC-CCCChHHHHHHHHHH
Q 034493            2 VLFYQIP-FHLVTRLWDTYLAEGDALPDFLVYIFASFLLTWSDKLQKL--DFQEMVMFLQHLPT-HAWTHQELEMVLSRA   77 (93)
Q Consensus         2 ll~rEf~-l~~~lrLWDt~la~~~~~~~~~~yvc~A~L~~~r~~L~~~--dF~~~~~~LQ~lp~-~~w~~~di~~ll~~A   77 (93)
                      +|++++| +++++||||.+++++.   .+++|||+|++...|++|++.  ||+.++.+||++|. .|     ++.++++|
T Consensus       211 lF~~~l~~~~~~~rlWD~~l~~g~---~~~~~v~~ail~~~~~~Ll~~~~d~~~l~~~l~~lp~~~d-----~~~li~~A  282 (292)
T 4hl4_A          211 WFGHVLSDFRHVVRLYDFFLACHP---LMPIYFAAVIVLYREQEVLDCDCDMASVHHLLSQIPQDLP-----YETLISRA  282 (292)
T ss_dssp             TTTTTSCCHHHHHHHHHHHHHSCT---THHHHHHHHHHHHTHHHHHTSCCSTTHHHHHHHSCCSSCC-----HHHHHHHH
T ss_pred             HHhhhcCcHHHHHHHHHHHHHcCC---cHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHhCCCCCC-----HHHHHHHH
Confidence            6889996 9999999999999975   579999999999999999874  89999999999994 44     99999999


Q ss_pred             HHHHHhccC
Q 034493           78 YMWHSMFNN   86 (93)
Q Consensus        78 ~~~~~~~~~   86 (93)
                      ..+.+.|..
T Consensus       283 ~~l~~~~pp  291 (292)
T 4hl4_A          283 GDLFVQFPP  291 (292)
T ss_dssp             HHHHHHSCC
T ss_pred             HHHHHHCCC
Confidence            999988764

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	93
d1fkma2	188	a.69.2.1 (A:443-630) Ypt/Rab-GAP domain of gyp1p {	6e-16

>d1fkma2 a.69.2.1 (A:443-630) Ypt/Rab-GAP domain of gyp1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 188

class: All alpha proteins
fold: Left-handed superhelix
superfamily: Ypt/Rab-GAP domain of gyp1p
family: Ypt/Rab-GAP domain of gyp1p
domain: Ypt/Rab-GAP domain of gyp1p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 66.8 bits (162), Expect = 6e-16
 Identities = 29/71 (40%), Positives = 49/71 (69%)

Query: 14  RLWDTYLAEGDALPDFLVYIFASFLLTWSDKLQKLDFQEMVMFLQHLPTHAWTHQELEMV 73
            + D+      +L +F V++ A+FL+ WSD+L ++DFQE + FLQ+ PT  WT  ++EM+
Sbjct: 117 AVEDSGKMRQSSLNEFHVFVCAAFLIKWSDQLMEMDFQETITFLQNPPTKDWTETDIEML 176

Query: 74  LSRAYMWHSMF 84
           LS A++W S++
Sbjct: 177 LSEAFIWQSLY 187

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	93
d1fkma2	188	Ypt/Rab-GAP domain of gyp1p {Baker's yeast (Saccha	99.93

>d1fkma2 a.69.2.1 (A:443-630) Ypt/Rab-GAP domain of gyp1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: Left-handed superhelix
superfamily: Ypt/Rab-GAP domain of gyp1p
family: Ypt/Rab-GAP domain of gyp1p
domain: Ypt/Rab-GAP domain of gyp1p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.93  E-value=5.3e-26  Score=158.64  Aligned_cols=85  Identities=44%  Similarity=0.947  Sum_probs=79.9

Q ss_pred             CccccccCchhHHHHHHhhhccCC--------------------------------------------------------
Q 034493            1 MVLFYQIPFHLVTRLWDTYLAEGD--------------------------------------------------------   24 (93)
Q Consensus         1 ~ll~rEf~l~~~lrLWDt~la~~~--------------------------------------------------------   24 (93)
                      .||+||||+++++||||++||+++                                                        
T Consensus        44 ~lf~~~~~~~~~~rlWD~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  123 (188)
T d1fkma2          44 CLLMREFQMGTVIRMWDTYLSETSQEVTSSYSMSSNDIKPPVTPTEPRVASFVTPTKDFQSPTTALSNMTPNNAVEDSGK  123 (188)
T ss_dssp             TTTGGGSCHHHHHHHHHHHHHHHC--------------------------------------------------------
T ss_pred             HHhhccCCHHHHHHHHHHHHhCCchhhhhhhhhhhhhhccccccccccchhhhhhccccccccccccccchhhhhhcccc
Confidence            479999999999999999999743                                                        


Q ss_pred             ----CcchHHHHHHHHHHHHHHHHHhhCCHHHHHHHhcCCCCCCCChHHHHHHHHHHHHHHHhcc
Q 034493           25 ----ALPDFLVYIFASFLLTWSDKLQKLDFQEMVMFLQHLPTHAWTHQELEMVLSRAYMWHSMFN   85 (93)
Q Consensus        25 ----~~~~~~~yvc~A~L~~~r~~L~~~dF~~~~~~LQ~lp~~~w~~~di~~ll~~A~~~~~~~~   85 (93)
                          +..++|+|+|+|+|..+|++|+++||+++|++|||+|+.+|++.|++.++++|+.+|++|.
T Consensus       124 ~~~~~~~~~~~~~c~A~L~~~r~~Ll~~df~~~l~~Lq~~P~~~~~~~di~~ll~~A~~~~~~~~  188 (188)
T d1fkma2         124 MRQSSLNEFHVFVCAAFLIKWSDQLMEMDFQETITFLQNPPTKDWTETDIEMLLSEAFIWQSLYK  188 (188)
T ss_dssp             ----CHHHHHHHHHHHHHHHTHHHHTTCCHHHHHHHHTSCSCTTCCHHHHHHHHHHHHHHHHHHC
T ss_pred             cccccchHHHHHHHHHHHHHHHHHHHHccHHHHHHHHhcCCCCCCCcccHHHHHHHHHHHHHHhC
Confidence                3468999999999999999999999999999999999999999999999999999999984