Citrus Sinensis ID: 034518

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90--
Protein Sequence
MASFAAARSIFRSNSARNAAARLASQAKTKAAPSPFGVSAKKPLSLAALRSPVEMSFCVESMLPYHTATASALSTSLLSISQCGYGWLPEGL
Secondary Structure (PSIPRED)
cHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccHHccccHHHHHHHHcccHHHHHHHHHHHHHHHccccccccccccc
Secondary Structure Prediction (SSPRO)
cHHHHHHHHHHHcHHHHHHHHHHHHHcccccccccccccccccccHHHcccccEEEEEHHcccHHHHHHHHHHHHHHHHccccccccccccc
Coil and Loop (DISEMBL)
MASFAAARSIFRSNSARNAAARLASQaktkaapspfgvsakkplslaalrspveMSFCVESMLPYHTATASALSTSLLSIsqcgygwlpegl
Flexible Loop (DISEMBL)
masfaaarsifrsnsarNAAARLASQaktkaapspfgvsaKKPLSLAALRSPVEMSFCVESMLPYHTATASALSTSLLSISQCGYGWLPEGL
Low Complexity Region (SEG)
MasfaaarsifrsnsarnaaarlasqaKTKAAPSPFGVSAKKPLSLAALRSPVEMSFCVESMLPYHtatasalstsllsISQCGYGWLPEGL
Disordered region (IsUnstruct)
***********************************************ALRSPVEMSFCVESMLPYHTATASALSTSLLSISQCGYGWL****
Disordered Region (DISOPRED)
******A*******************************************SPVEMSFCVESMLPYHTATASALSTSLLSISQCGYGWLPEGL
Disordered Region (DISEMBL)
********SIFRSNSA*********************VSAKKPLSLAALRSPVEMSFCVESMLPYHTATASALSTSLLSISQCGYGWLPEGL
Disordered Region (DISPRO)
******************************************PLSLAALRSPVEMSFCVESMLPYHTATASALSTSLLSISQCGYGWLPE**
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MASFAAARSIFRSNSARNAAARLASQAKTKAAPSPFGVSAKKPLSLAALRSPVEMSFCVESMLPYHTATASALSTSLLSISQCGYGWLPEGL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	92
356543857	96	PREDICTED: uncharacterized protein LOC10	0.923	0.885	0.724	7e-25
356549900	92	PREDICTED: uncharacterized protein LOC10	0.923	0.923	0.712	1e-24
356549898	96	PREDICTED: uncharacterized protein LOC10	0.923	0.885	0.701	4e-24
356543859	95	PREDICTED: uncharacterized protein LOC10	0.913	0.884	0.720	6e-24
359485221	92	PREDICTED: uncharacterized protein LOC10	0.913	0.913	0.701	1e-23
359485215	92	PREDICTED: uncharacterized protein LOC10	0.913	0.913	0.689	2e-23
359485217	96	PREDICTED: uncharacterized protein LOC10	0.902	0.864	0.697	3e-23
225446443	96	PREDICTED: uncharacterized protein LOC10	0.891	0.854	0.694	2e-22
359485219	96	PREDICTED: uncharacterized protein LOC10	0.891	0.854	0.694	2e-22
388518391	93	unknown [Lotus japonicus]	0.923	0.913	0.632	5e-21

>gi|356543857|ref|XP_003540375.1| PREDICTED: uncharacterized protein LOC100788648 isoform 1 [Glycine max]

 Score =  117 bits (294), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 63/87 (72%), Positives = 71/87 (81%), Gaps = 2/87 (2%)

Query: 5  AAARSIFRSNSARNAAARLASQAKTKAAPSPFGVSAKKPLSLAALRSPVEMSFCVESMLP 64
          AAARSIFRS SAR AA RL S AK  AA SPF V++ KPLS + LR PVE+SFCVESMLP
Sbjct: 7  AAARSIFRSCSARRAAFRLGSDAK--AARSPFRVASNKPLSQSTLRCPVELSFCVESMLP 64

Query: 65 YHTATASALSTSLLSISQCGYGWLPEG 91
          YH+ATASAL TS+LS+S+  YGWLPEG
Sbjct: 65 YHSATASALMTSMLSVSRHSYGWLPEG 91

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356549900|ref|XP_003543328.1| PREDICTED: uncharacterized protein LOC100777625 isoform 2 [Glycine max]

 Score =  117 bits (292), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 62/87 (71%), Positives = 72/87 (82%), Gaps = 2/87 (2%)

Query: 5  AAARSIFRSNSARNAAARLASQAKTKAAPSPFGVSAKKPLSLAALRSPVEMSFCVESMLP 64
          AAARSIFRS S+R AA RL S+AK  AA SPF V++ +PLS + LR PVE+SFCVESMLP
Sbjct: 7  AAARSIFRSCSSRRAAFRLGSEAK--AARSPFRVASNQPLSQSTLRCPVELSFCVESMLP 64

Query: 65 YHTATASALSTSLLSISQCGYGWLPEG 91
          YHTATASAL TS+LS+S+  YGWLPEG
Sbjct: 65 YHTATASALMTSMLSVSRHSYGWLPEG 91

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356549898|ref|XP_003543327.1| PREDICTED: uncharacterized protein LOC100777625 isoform 1 [Glycine max]

 Score =  115 bits (287), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 61/87 (70%), Positives = 71/87 (81%), Gaps = 2/87 (2%)

Query: 5  AAARSIFRSNSARNAAARLASQAKTKAAPSPFGVSAKKPLSLAALRSPVEMSFCVESMLP 64
          AAARSIFRS S+R AA RL S+AK  AA SPF V++ +PLS + LR PVE+SFCVESMLP
Sbjct: 7  AAARSIFRSCSSRRAAFRLGSEAK--AARSPFRVASNQPLSQSTLRCPVELSFCVESMLP 64

Query: 65 YHTATASALSTSLLSISQCGYGWLPEG 91
          YHTATASAL TS+LS+S+  YGWLPE 
Sbjct: 65 YHTATASALMTSMLSVSRHSYGWLPED 91

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356543859|ref|XP_003540376.1| PREDICTED: uncharacterized protein LOC100788648 isoform 2 [Glycine max]

 Score =  114 bits (286), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 62/86 (72%), Positives = 70/86 (81%), Gaps = 2/86 (2%)

Query: 5  AAARSIFRSNSARNAAARLASQAKTKAAPSPFGVSAKKPLSLAALRSPVEMSFCVESMLP 64
          AAARSIFRS SAR AA RL S AK  AA SPF V++ KPLS + LR PVE+SFCVESMLP
Sbjct: 7  AAARSIFRSCSARRAAFRLGSDAK--AARSPFRVASNKPLSQSTLRCPVELSFCVESMLP 64

Query: 65 YHTATASALSTSLLSISQCGYGWLPE 90
          YH+ATASAL TS+LS+S+  YGWLPE
Sbjct: 65 YHSATASALMTSMLSVSRHSYGWLPE 90

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359485221|ref|XP_003633237.1| PREDICTED: uncharacterized protein LOC100243665 isoform 5 [Vitis vinifera]

 Score =  113 bits (283), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 61/87 (70%), Positives = 71/87 (81%), Gaps = 3/87 (3%)

Query: 6  AARSIFRSNSARNAAARLASQAKTKAAPSPFGVSAKKPLSLAALRSPVEMSFCVESMLPY 65
          AARSIFRS S RNAAAR+AS+AK  AA SP  +S+ KPLS    R PVE+S CVE+M+P+
Sbjct: 9  AARSIFRSTSVRNAAARVASEAK--AARSPLRISSNKPLSNRIFRCPVELS-CVETMVPF 65

Query: 66 HTATASALSTSLLSISQCGYGWLPEGL 92
          HTATASAL TS+LSIS+ GYGWLPEGL
Sbjct: 66 HTATASALMTSMLSISRRGYGWLPEGL 92

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359485215|ref|XP_003633234.1| PREDICTED: uncharacterized protein LOC100243665 isoform 2 [Vitis vinifera] gi|302143334|emb|CBI21895.3| unnamed protein product [Vitis vinifera]

 Score =  112 bits (281), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 60/87 (68%), Positives = 71/87 (81%), Gaps = 3/87 (3%)

Query: 6  AARSIFRSNSARNAAARLASQAKTKAAPSPFGVSAKKPLSLAALRSPVEMSFCVESMLPY 65
          AARSIFRS S RNAAAR+AS+AK  AA SP  +S+ KPLS    R PVE+S CVE+M+P+
Sbjct: 9  AARSIFRSTSVRNAAARVASEAK--AARSPLRISSNKPLSNRIFRCPVELS-CVETMVPF 65

Query: 66 HTATASALSTSLLSISQCGYGWLPEGL 92
          HTATASAL TS+LSIS+ GYGWLPEG+
Sbjct: 66 HTATASALMTSMLSISRRGYGWLPEGI 92

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359485217|ref|XP_003633235.1| PREDICTED: uncharacterized protein LOC100243665 isoform 3 [Vitis vinifera]

 Score =  112 bits (279), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 60/86 (69%), Positives = 70/86 (81%), Gaps = 3/86 (3%)

Query: 6  AARSIFRSNSARNAAARLASQAKTKAAPSPFGVSAKKPLSLAALRSPVEMSFCVESMLPY 65
          AARSIFRS S RNAAAR+AS+AK  AA SP  +S+ KPLS    R PVE+S CVE+M+P+
Sbjct: 9  AARSIFRSTSVRNAAARVASEAK--AARSPLRISSNKPLSNRIFRCPVELS-CVETMVPF 65

Query: 66 HTATASALSTSLLSISQCGYGWLPEG 91
          HTATASAL TS+LSIS+ GYGWLPEG
Sbjct: 66 HTATASALMTSMLSISRRGYGWLPEG 91

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225446443|ref|XP_002276788.1| PREDICTED: uncharacterized protein LOC100243665 isoform 1 [Vitis vinifera]

 Score =  109 bits (272), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 59/85 (69%), Positives = 69/85 (81%), Gaps = 3/85 (3%)

Query: 6  AARSIFRSNSARNAAARLASQAKTKAAPSPFGVSAKKPLSLAALRSPVEMSFCVESMLPY 65
          AARSIFRS S RNAAAR+AS+AK  AA SP  +S+ KPLS    R PVE+S CVE+M+P+
Sbjct: 9  AARSIFRSTSVRNAAARVASEAK--AARSPLRISSNKPLSNRIFRCPVELS-CVETMVPF 65

Query: 66 HTATASALSTSLLSISQCGYGWLPE 90
          HTATASAL TS+LSIS+ GYGWLPE
Sbjct: 66 HTATASALMTSMLSISRRGYGWLPE 90

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359485219|ref|XP_003633236.1| PREDICTED: uncharacterized protein LOC100243665 isoform 4 [Vitis vinifera]

 Score =  109 bits (272), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 59/85 (69%), Positives = 69/85 (81%), Gaps = 3/85 (3%)

Query: 6  AARSIFRSNSARNAAARLASQAKTKAAPSPFGVSAKKPLSLAALRSPVEMSFCVESMLPY 65
          AARSIFRS S RNAAAR+AS+AK  AA SP  +S+ KPLS    R PVE+S CVE+M+P+
Sbjct: 9  AARSIFRSTSVRNAAARVASEAK--AARSPLRISSNKPLSNRIFRCPVELS-CVETMVPF 65

Query: 66 HTATASALSTSLLSISQCGYGWLPE 90
          HTATASAL TS+LSIS+ GYGWLPE
Sbjct: 66 HTATASALMTSMLSISRRGYGWLPE 90

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388518391|gb|AFK47257.1| unknown [Lotus japonicus]

 Score =  105 bits (261), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 55/87 (63%), Positives = 70/87 (80%), Gaps = 2/87 (2%)

Query: 5  AAARSIFRSNSARNAAARLASQAKTKAAPSPFGVSAKKPLSLAALRSPVEMSFCVESMLP 64
          +AARS+FRS S+  AA RLAS+AK  AA SPF +++ KPLS ++LRSPV++SFCVESM+P
Sbjct: 4  SAARSMFRSFSSHRAAFRLASEAK--AARSPFRIASNKPLSQSSLRSPVQLSFCVESMMP 61

Query: 65 YHTATASALSTSLLSISQCGYGWLPEG 91
          +HTATASAL  S+L +S    GWLPEG
Sbjct: 62 FHTATASALMNSMLFVSSRSSGWLPEG 88

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	92
TAIR|locus:505006258	100	NFD6 "AT2G20585" [Arabidopsis	0.684	0.63	0.428	1.4e-09
TAIR|locus:505006152	95	AT1G28395 "AT1G28395" [Arabido	0.652	0.631	0.370	1e-06
TAIR|locus:4010713673	93	AT2G33847 [Arabidopsis thalian	0.554	0.548	0.411	1.5e-05

TAIR|locus:505006258 NFD6 "AT2G20585" [Arabidopsis thaliana (taxid:3702)]

 Score = 139 (54.0 bits), Expect = 1.4e-09, P = 1.4e-09
 Identities = 27/63 (42%), Positives = 37/63 (58%)

Query:    28 KTKAAPSPFGVSAKKPLSLAALRSPVEMSFCVESMLPYHXXXXXXXXXXXXXISQCGYGW 87
             + K+AP  F  +A++   L+ LR+PVE+SFCVES+LPYH             IS   YGW
Sbjct:    32 QAKSAPPLFRATARRSPLLSPLRNPVELSFCVESLLPYHSATASALMTSKLSISGQTYGW 91

Query:    88 LPE 90
             L +
Sbjct:    92 LSD 94

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:505006152 AT1G28395 "AT1G28395" [Arabidopsis thaliana (taxid:3702)]

 Score = 112 (44.5 bits), Expect = 1.0e-06, P = 1.0e-06
 Identities = 23/62 (37%), Positives = 34/62 (54%)

Query:    31 AAPSPFGVSAKKPLSLAALRSPVEMSFCVESMLPYHXXXXXXXXXXXXXISQCGYGWLPE 90
             +A + F +  + PL+    RSPVE+S CVE+MLPYH             +S+   GW+ +
Sbjct:    32 SARTAFRMPKQSPLTNRIFRSPVELSCCVETMLPYHTATASALLNSMLSVSR--RGWIVD 89

Query:    91 GL 92
             GL
Sbjct:    90 GL 91

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0005739 "mitochondrion" evidence=IDA

GO:0006164 "purine nucleotide biosynthetic process" evidence=RCA

TAIR|locus:4010713673 AT2G33847 [Arabidopsis thaliana (taxid:3702)]

 Score = 101 (40.6 bits), Expect = 1.5e-05, P = 1.5e-05
 Identities = 21/51 (41%), Positives = 27/51 (52%)

Query:    31 AAPSPFGVSAKKPLSLAALRSPVEMSFCVESMLPYHXXXXXXXXXXXXXIS 81
             +A S F +  + PLS    RSPVE+S CVE+MLPYH             +S
Sbjct:    29 SARSSFKLPKQSPLSHRIFRSPVELSCCVETMLPYHTATASALLNSMLSVS 79


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.319   0.133   0.422    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0       92        53   0.00091  102 3  11 22  0.44    27
                                                     29  0.50    26


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  3
  No. of states in DFA:  453 (48 KB)
  Total size of DFA:  79 KB (2064 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  6.40u 0.19s 6.59t   Elapsed:  00:00:01
  Total cpu time:  6.40u 0.19s 6.59t   Elapsed:  00:00:01
  Start:  Thu May  9 18:20:08 2013   End:  Thu May  9 18:20:09 2013

GO:0005634 "nucleus" evidence=ISM

GO:0005739 "mitochondrion" evidence=ISM

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Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: grail3.0058008001 hypothetical protein (91 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

No hit with probability above 80.00

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00