Citrus Sinensis ID: 034553

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-
Protein Sequence
MVLDCDCHNVKALYRRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQKSLKQLQAESNKRDAKFYANMFARVTKDSSVATKVGYFACD
Secondary Structure (PSIPRED)
cccccccccHHHHHHHHHHHHHHccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHccccccc
Secondary Structure Prediction (SSPRO)
cEEEccccHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccc
Coil and Loop (DISEMBL)
mvldcdchnVKALYRRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQKSLKQLQAESNKRDAKFYANMFARVtkdssvatkvgyfacd
Flexible Loop (DISEMBL)
MVLDCDCHNVKALYRRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQKSLKQLQAESNKRDAKFYANMFarvtkdssvatkvgyfacd
Low Complexity Region (SEG)
MVLDCDCHNVKALYRRAQVYMEIADLILAELDIKKAIEADPQNREVkllqkslkqlqAESNKRDAKFYANMFARVTKDSSVATKVGYFACD
Disordered region (IsUnstruct)
**LDCDCHNVKALYRRAQVYMEIADLILAELDIKKAI****************************KFYANMFARVTKDSSVATKVGYFA**
Disordered Region (DISOPRED)
MVLDCDCHNVKALYRRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQKS***********************************F***
Disordered Region (DISEMBL)
MVLDCDCHNVKALYRRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQKSLKQLQAESNKRDAKFYANMFARVTKDSSVATKVGYFACD
Disordered Region (DISPRO)
MVLDCDCHNVKALYRRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQKSLKQLQAESNKRDAKFYANMFARVTKD*************
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MVLDCDCHNVKALYRRAQVYMEIADLILAELDIKKAIExxxxxxxxxxxxxxxxxxxxxSNKRDAKFYANMFARVTKDSSVATKVGYFACD
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	91	2.2.26 [Sep-21-2011]
Q38931	551	Peptidyl-prolyl cis-trans	no	no	0.846	0.139	0.636	4e-21
Q43207	559	70 kDa peptidyl-prolyl is	N/A	no	0.912	0.148	0.614	2e-19
Q9FJL3	578	Peptidyl-prolyl cis-trans	no	no	0.813	0.128	0.608	2e-18
Q64378	456	Peptidyl-prolyl cis-trans	yes	no	0.780	0.155	0.410	1e-06
Q9VL78	439	FK506-binding protein 59	yes	no	0.846	0.175	0.389	2e-06
Q5RF88	457	Peptidyl-prolyl cis-trans	yes	no	0.857	0.170	0.320	2e-06
Q13451	457	Peptidyl-prolyl cis-trans	yes	no	0.857	0.170	0.320	2e-06
Q95L05	457	Peptidyl-prolyl cis-trans	N/A	no	0.857	0.170	0.320	2e-06
Q9XSI2	457	Peptidyl-prolyl cis-trans	N/A	no	0.857	0.170	0.320	4e-06
Q9XT11	457	Peptidyl-prolyl cis-trans	N/A	no	0.857	0.170	0.320	4e-06

>sp|Q38931|FKB62_ARATH Peptidyl-prolyl cis-trans isomerase FKBP62 OS=Arabidopsis thaliana GN=FKBP62 PE=1 SV=2

 Score = 99.8 bits (247), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 49/77 (63%), Positives = 62/77 (80%)

Query: 2   VLDCDCHNVKALYRRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQKSLKQLQAESN 61
           VL+ +  NVKALYRRAQ YME++DL LAE D+KKA+E DP NREVKL QK LK+   E N
Sbjct: 475 VLELESTNVKALYRRAQAYMELSDLDLAEFDVKKALEIDPNNREVKLEQKRLKEKMKEFN 534

Query: 62  KRDAKFYANMFARVTKD 78
           K++AKFY NMFA+++K+
Sbjct: 535 KKEAKFYGNMFAKLSKE 551

PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides (By similarity). Co-chaperone that positively modulates thermotolerance by interacting with HSP90.1 and increasing the HSFA2-mediated accumulation of chaperones of the small-HSPs family.
Arabidopsis thaliana (taxid: 3702)
EC: 5EC: .EC: 2EC: .EC: 1EC: .EC: 8

>sp|Q43207|FKB70_WHEAT 70 kDa peptidyl-prolyl isomerase OS=Triticum aestivum GN=FKBP70 PE=1 SV=1

 Score = 94.0 bits (232), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 51/83 (61%), Positives = 67/83 (80%)

Query: 2   VLDCDCHNVKALYRRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQKSLKQLQAESN 61
           VL+ D  NVKALYRRAQ Y ++ADL LAE+DIKKA+E DP+NR+VKL  K+LK+   E N
Sbjct: 476 VLELDSRNVKALYRRAQAYTQLADLELAEVDIKKALEIDPENRDVKLTYKTLKEKIKEIN 535

Query: 62  KRDAKFYANMFARVTKDSSVATK 84
           K+DAKFY+NMF+++TK S+  +K
Sbjct: 536 KKDAKFYSNMFSKMTKPSAEESK 558

PPIases accelerate the folding of proteins during protein synthesis.

Triticum aestivum (taxid: 4565)

EC: 5

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 8

>sp|Q9FJL3|FKB65_ARATH Peptidyl-prolyl cis-trans isomerase FKBP65 OS=Arabidopsis thaliana GN=FKBP65 PE=1 SV=1

 Score = 91.3 bits (225), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 45/74 (60%), Positives = 57/74 (77%)

Query: 2   VLDCDCHNVKALYRRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQKSLKQLQAESN 61
           VL+ D  NVKA+YRRA  Y+E ADL LAELDIKKA+E DP N+EVK+  K LK+   E N
Sbjct: 485 VLEMDSRNVKAMYRRAHAYLETADLDLAELDIKKALEIDPDNKEVKIEYKKLKEKVKEYN 544

Query: 62  KRDAKFYANMFARV 75
           K+DAKFY+NM +++
Sbjct: 545 KKDAKFYSNMLSKM 558

PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides. Co-chaperone that negatively modulates thermotolerance by interacting with FKBP62 and decreasing the HSFA2-mediated accumulation of chaperones of the small-HSPs family. Plays a positive role in tolerance to intracellular acid stress by maintaining the pH homeostasis.

Arabidopsis thaliana (taxid: 3702)

EC: 5

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 8

>sp|Q64378|FKBP5_MOUSE Peptidyl-prolyl cis-trans isomerase FKBP5 OS=Mus musculus GN=Fkbp5 PE=1 SV=1

 Score = 52.0 bits (123), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 30/73 (41%), Positives = 43/73 (58%), Gaps = 2/73 (2%)

Query: 3   LDCDCHNVKALYRRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQKSLKQLQA-ESN 61
           L  D  N K LYRR +  + + D   A+ D +K +  +PQNR  +L Q S+ Q +A E N
Sbjct: 344 LGLDSANEKGLYRRGEAQLLMNDFESAKGDFEKVLAVNPQNRAARL-QISMCQRKAKEHN 402

Query: 62  KRDAKFYANMFAR 74
           +RD + YANMF +
Sbjct: 403 ERDRRVYANMFKK 415

Interacts with functionally mature heterooligomeric progesterone receptor complexes along with HSP90 and TEBP.

Mus musculus (taxid: 10090)

EC: 5

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 8

>sp|Q9VL78|FKB59_DROME FK506-binding protein 59 OS=Drosophila melanogaster GN=FKBP59 PE=1 SV=1

 Score = 51.2 bits (121), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 30/77 (38%), Positives = 42/77 (54%)

Query: 2   VLDCDCHNVKALYRRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQKSLKQLQAESN 61
           VL  D +NVKALYRR Q  + I +L  A  D +K I+ +P N+         KQ   ES 
Sbjct: 323 VLALDKNNVKALYRRGQCNLTINELEDALEDFQKVIQLEPGNKAAANQVIICKQKLKESK 382

Query: 62  KRDAKFYANMFARVTKD 78
            ++ K YANMF ++  +
Sbjct: 383 NKEKKLYANMFTKLAAN 399

May have a role in phototransduction; inhibits or prevents Ca(2+) induced stimulation of the trpl ion channel.

Drosophila melanogaster (taxid: 7227)

EC: 5

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 8

>sp|Q5RF88|FKBP5_PONAB Peptidyl-prolyl cis-trans isomerase FKBP5 OS=Pongo abelii GN=FKBP5 PE=2 SV=1

 Score = 50.8 bits (120), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 25/78 (32%), Positives = 42/78 (53%)

Query: 3   LDCDCHNVKALYRRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQKSLKQLQAESNK 62
           L  D  N K LYRR +  + + +   A+ D +K +E +PQN+  +L     ++   E N+
Sbjct: 344 LGLDSANGKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQKKAKEHNE 403

Query: 63  RDAKFYANMFARVTKDSS 80
           RD + YANMF +  +  +
Sbjct: 404 RDRRIYANMFKKFAEQDA 421

Interacts with functionally mature heterooligomeric progesterone receptor complexes along with HSP90 and TEBP.

Pongo abelii (taxid: 9601)

EC: 5

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 8

>sp|Q13451|FKBP5_HUMAN Peptidyl-prolyl cis-trans isomerase FKBP5 OS=Homo sapiens GN=FKBP5 PE=1 SV=2

 Score = 50.8 bits (120), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 25/78 (32%), Positives = 42/78 (53%)

Query: 3   LDCDCHNVKALYRRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQKSLKQLQAESNK 62
           L  D  N K LYRR +  + + +   A+ D +K +E +PQN+  +L     ++   E N+
Sbjct: 344 LGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQKKAKEHNE 403

Query: 63  RDAKFYANMFARVTKDSS 80
           RD + YANMF +  +  +
Sbjct: 404 RDRRIYANMFKKFAEQDA 421

Interacts with functionally mature heterooligomeric progesterone receptor complexes along with HSP90 and TEBP.

Homo sapiens (taxid: 9606)

EC: 5

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 8

>sp|Q95L05|FKBP5_CHLAE Peptidyl-prolyl cis-trans isomerase FKBP5 OS=Chlorocebus aethiops GN=FKBP5 PE=2 SV=1

 Score = 50.8 bits (120), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 25/78 (32%), Positives = 42/78 (53%)

Query: 3   LDCDCHNVKALYRRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQKSLKQLQAESNK 62
           L  D  N K LYRR +  + + +   A+ D +K +E +PQN+  +L     ++   E N+
Sbjct: 344 LGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQKKAKEHNE 403

Query: 63  RDAKFYANMFARVTKDSS 80
           RD + YANMF +  +  +
Sbjct: 404 RDRRIYANMFKKFAEQDA 421

Interacts with functionally mature heterooligomeric progesterone receptor complexes along with HSP90 and TEBP. Interacts with the glucocorticoid receptor and modulates its response to glucocorticoids.

Chlorocebus aethiops (taxid: 9534)

EC: 5

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 8

>sp|Q9XSI2|FKBP5_SAGOE Peptidyl-prolyl cis-trans isomerase FKBP5 OS=Saguinus oedipus GN=FKBP5 PE=2 SV=2

 Score = 50.4 bits (119), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 25/78 (32%), Positives = 42/78 (53%)

Query: 3   LDCDCHNVKALYRRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQKSLKQLQAESNK 62
           L  D  N K LYRR +  + + +   A+ D +K +E +PQN+  +L     ++   E N+
Sbjct: 344 LGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQIVVCQKKAKEHNE 403

Query: 63  RDAKFYANMFARVTKDSS 80
           RD + YANMF +  +  +
Sbjct: 404 RDRRIYANMFKKFAEQDA 421

Interacts with functionally mature heterooligomeric progesterone receptor complexes along with HSP90 and TEBP (By similarity). Interacts with the glucocorticoid receptor and modulates its response to glucocorticoids.

Saguinus oedipus (taxid: 9490)

EC: 5

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 8

>sp|Q9XT11|FKBP5_AOTNA Peptidyl-prolyl cis-trans isomerase FKBP5 OS=Aotus nancymaae GN=FKBP5 PE=2 SV=2

 Score = 50.1 bits (118), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 25/78 (32%), Positives = 42/78 (53%)

Query: 3   LDCDCHNVKALYRRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQKSLKQLQAESNK 62
           L  D  N K LYRR +  + + +   A+ D +K +E +PQN+  +L     ++   E N+
Sbjct: 344 LGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQIFMCQKKAKEHNE 403

Query: 63  RDAKFYANMFARVTKDSS 80
           RD + YANMF +  +  +
Sbjct: 404 RDRRIYANMFKKFAEQDA 421

Interacts with functionally mature heterooligomeric progesterone receptor complexes along with HSP90 and TEBP (By similarity). Interacts with the glucocorticoid receptor and modulates its response to glucocorticoids.

Aotus nancymaae (taxid: 37293)

EC: 5

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 8

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	91
225458880	600	PREDICTED: 70 kDa peptidyl-prolyl isomer	0.912	0.138	0.759	3e-28
255538020	598	peptidylprolyl isomerase, putative [Rici	0.912	0.138	0.698	1e-25
224067192	573	predicted protein [Populus trichocarpa]	0.923	0.146	0.678	3e-25
356552270	582	PREDICTED: 70 kDa peptidyl-prolyl isomer	0.912	0.142	0.662	2e-23
356564113	583	PREDICTED: 70 kDa peptidyl-prolyl isomer	0.912	0.142	0.638	2e-22
357437549	609	70 kDa peptidyl-prolyl isomerase [Medica	0.835	0.124	0.671	8e-22
115477393	580	Os08g0525600 [Oryza sativa Japonica Grou	0.934	0.146	0.623	2e-21
297840663	584	hypothetical protein ARALYDRAFT_338459 [	0.791	0.123	0.694	9e-21
218201484	583	hypothetical protein OsI_29964 [Oryza sa	0.934	0.145	0.602	8e-20
302790984	567	hypothetical protein SELMODRAFT_443450 [	0.835	0.134	0.631	8e-20

>gi|225458880|ref|XP_002283423.1| PREDICTED: 70 kDa peptidyl-prolyl isomerase [Vitis vinifera] gi|302142176|emb|CBI19379.3| unnamed protein product [Vitis vinifera]

 Score =  129 bits (323), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 63/83 (75%), Positives = 73/83 (87%)

Query: 2   VLDCDCHNVKALYRRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQKSLKQLQAESN 61
           VLD + HNVKALYRRAQ YM+ ADL LA+LDIKKA+EADPQNREVKL+QK+LKQLQ ESN
Sbjct: 481 VLDIEFHNVKALYRRAQAYMKTADLDLAQLDIKKALEADPQNREVKLMQKNLKQLQGESN 540

Query: 62  KRDAKFYANMFARVTKDSSVATK 84
           KRDAK Y+NMFA +  D++VATK
Sbjct: 541 KRDAKLYSNMFAPMRNDTAVATK 563

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255538020|ref|XP_002510075.1| peptidylprolyl isomerase, putative [Ricinus communis] gi|223550776|gb|EEF52262.1| peptidylprolyl isomerase, putative [Ricinus communis]

 Score =  120 bits (300), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 58/83 (69%), Positives = 69/83 (83%)

Query: 2   VLDCDCHNVKALYRRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQKSLKQLQAESN 61
           VLD +  NVKALYRRAQ YM+ ADL+ AELDIKKA+E DP NREVK LQK+L+QLQ E +
Sbjct: 476 VLDVEFDNVKALYRRAQAYMQTADLVSAELDIKKALEIDPHNREVKSLQKTLRQLQVERD 535

Query: 62  KRDAKFYANMFARVTKDSSVATK 84
           KRDAK Y+NMFAR+TK ++V TK
Sbjct: 536 KRDAKLYSNMFARMTKRTAVVTK 558

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224067192|ref|XP_002302401.1| predicted protein [Populus trichocarpa] gi|222844127|gb|EEE81674.1| predicted protein [Populus trichocarpa]

 Score =  119 bits (297), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 57/84 (67%), Positives = 71/84 (84%)

Query: 2   VLDCDCHNVKALYRRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQKSLKQLQAESN 61
           VLD + +N+KALYRRAQ  ++  DL+ A++DIKKA+E DPQNREVKL+QK+LKQLQAESN
Sbjct: 480 VLDIEFYNIKALYRRAQALIQTTDLVSADMDIKKALEVDPQNREVKLIQKTLKQLQAESN 539

Query: 62  KRDAKFYANMFARVTKDSSVATKV 85
           KRDAK Y+NMFA +TK +S  TKV
Sbjct: 540 KRDAKLYSNMFADMTKQTSAITKV 563

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356552270|ref|XP_003544491.1| PREDICTED: 70 kDa peptidyl-prolyl isomerase-like [Glycine max]

 Score =  113 bits (282), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 55/83 (66%), Positives = 67/83 (80%)

Query: 2   VLDCDCHNVKALYRRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQKSLKQLQAESN 61
           VLD +  NVKA YRRAQ Y+E  D +LA++DIKKA+  DPQNREVK++QK LKQLQA+S+
Sbjct: 471 VLDVEFCNVKAFYRRAQAYIETGDYLLADVDIKKALVVDPQNREVKVIQKKLKQLQADSD 530

Query: 62  KRDAKFYANMFARVTKDSSVATK 84
           K+DAK Y NMFAR TKDS +A K
Sbjct: 531 KKDAKLYENMFARKTKDSPMAIK 553

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356564113|ref|XP_003550301.1| PREDICTED: 70 kDa peptidyl-prolyl isomerase-like [Glycine max]

 Score =  109 bits (273), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 53/83 (63%), Positives = 66/83 (79%)

Query: 2   VLDCDCHNVKALYRRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQKSLKQLQAESN 61
           VLD +  NVKA YRRAQ Y+E  D +LA++DIKKA+  DPQNR+VK++QK LKQLQA+S+
Sbjct: 472 VLDVEFCNVKAFYRRAQAYIETGDYLLADVDIKKALVVDPQNRDVKVIQKKLKQLQADSD 531

Query: 62  KRDAKFYANMFARVTKDSSVATK 84
           K+DAK Y NM AR TKD S+A K
Sbjct: 532 KKDAKLYENMLARKTKDPSMAIK 554

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357437549|ref|XP_003589050.1| 70 kDa peptidyl-prolyl isomerase [Medicago truncatula] gi|355478098|gb|AES59301.1| 70 kDa peptidyl-prolyl isomerase [Medicago truncatula]

 Score =  107 bits (267), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 51/76 (67%), Positives = 63/76 (82%)

Query: 2   VLDCDCHNVKALYRRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQKSLKQLQAESN 61
           VLD + HNVKALYRRAQ Y+E  D +LA++DIKKA+E DPQNREVK+L+  LKQLQA+S+
Sbjct: 471 VLDVEFHNVKALYRRAQAYIETEDFLLADVDIKKALEVDPQNREVKVLKMKLKQLQADSD 530

Query: 62  KRDAKFYANMFARVTK 77
           K+DAK Y +MFA  TK
Sbjct: 531 KKDAKLYESMFAPKTK 546

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|115477393|ref|NP_001062292.1| Os08g0525600 [Oryza sativa Japonica Group] gi|42761405|dbj|BAD11570.1| putative 70 kDa peptidylprolyl isomerase [Oryza sativa Japonica Group] gi|113624261|dbj|BAF24206.1| Os08g0525600 [Oryza sativa Japonica Group] gi|215737005|dbj|BAG95934.1| unnamed protein product [Oryza sativa Japonica Group]

 Score =  106 bits (264), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 53/85 (62%), Positives = 66/85 (77%)

Query: 2   VLDCDCHNVKALYRRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQKSLKQLQAESN 61
           VL+ D  NVKALYRRAQ YM++ADL LAE+DIKKA+E DP NR+VKL  K+LK+   E N
Sbjct: 481 VLELDSQNVKALYRRAQAYMQLADLELAEVDIKKALEIDPDNRDVKLTYKNLKEKVKEYN 540

Query: 62  KRDAKFYANMFARVTKDSSVATKVG 86
           K+DAKFY+NMFA++TK  +   K G
Sbjct: 541 KKDAKFYSNMFAKMTKQPAEDGKAG 565

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297840663|ref|XP_002888213.1| hypothetical protein ARALYDRAFT_338459 [Arabidopsis lyrata subsp. lyrata] gi|297334054|gb|EFH64472.1| hypothetical protein ARALYDRAFT_338459 [Arabidopsis lyrata subsp. lyrata]

 Score =  104 bits (259), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 50/72 (69%), Positives = 61/72 (84%)

Query: 2   VLDCDCHNVKALYRRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQKSLKQLQAESN 61
           VLD +  NVKALYRRAQ ++E+ DLI AE+DIKKA+EADP+NREVK L K+LK  +AES+
Sbjct: 484 VLDIEFQNVKALYRRAQSHIEVGDLISAEMDIKKALEADPENREVKSLYKTLKFAKAESD 543

Query: 62  KRDAKFYANMFA 73
           +RDAK YANMFA
Sbjct: 544 RRDAKLYANMFA 555

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|218201484|gb|EEC83911.1| hypothetical protein OsI_29964 [Oryza sativa Indica Group] gi|222640897|gb|EEE69029.1| hypothetical protein OsJ_28006 [Oryza sativa Japonica Group]

 Score =  100 bits (250), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 53/88 (60%), Positives = 66/88 (75%), Gaps = 3/88 (3%)

Query: 2   VLDCDCHNVKALYRRAQVYMEIADLILAELDIKKAIEADPQNRE---VKLLQKSLKQLQA 58
           VL+ D  NVKALYRRAQ YM++ADL LAE+DIKKA+E DP NR+   VKL  K+LK+   
Sbjct: 481 VLELDSQNVKALYRRAQAYMQLADLELAEVDIKKALEIDPDNRQVLDVKLTYKNLKEKVK 540

Query: 59  ESNKRDAKFYANMFARVTKDSSVATKVG 86
           E NK+DAKFY+NMFA++TK  +   K G
Sbjct: 541 EYNKKDAKFYSNMFAKMTKQPAEDGKAG 568

Source: Oryza sativa Indica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|302790984|ref|XP_002977259.1| hypothetical protein SELMODRAFT_443450 [Selaginella moellendorffii] gi|300155235|gb|EFJ21868.1| hypothetical protein SELMODRAFT_443450 [Selaginella moellendorffii]

 Score =  100 bits (250), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 48/76 (63%), Positives = 59/76 (77%)

Query: 2   VLDCDCHNVKALYRRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQKSLKQLQAESN 61
           VL+ +  NVKALYRRAQ Y   ADL LAE DIKKA+E DPQNR++++  KSLKQ Q E N
Sbjct: 462 VLELESQNVKALYRRAQAYTRTADLDLAEFDIKKALEIDPQNRDLRMEYKSLKQKQVEYN 521

Query: 62  KRDAKFYANMFARVTK 77
           K++AK Y NMFAR++K
Sbjct: 522 KKEAKLYGNMFARLSK 537

Source: Selaginella moellendorffii

Species: Selaginella moellendorffii

Genus: Selaginella

Family: Selaginellaceae

Order: Selaginellales

Class: Isoetopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	91
UNIPROTKB|Q7F1F2	580	OJ1191_A10.119 "cDNA clone:J03	0.934	0.146	0.564	4.4e-19
TAIR|locus:2037650	164	TPR6 "AT1G58450" [Arabidopsis	0.791	0.439	0.611	2.8e-18
UNIPROTKB|Q9XFE4	585	OSJNBa0091C07.4 "OSJNBa0091C07	0.835	0.129	0.578	1.1e-16
TAIR|locus:2090265	562	ROF1 "AT3G25230" [Arabidopsis	0.813	0.131	0.567	2.7e-16
TAIR|locus:2152561	578	ROF2 "AT5G48570" [Arabidopsis	0.813	0.128	0.554	1.3e-15
UNIPROTKB|Q6K5Q1	682	P0579G08.8 "Putative peptidylp	0.934	0.124	0.435	1.3e-12
UNIPROTKB|A8J0I6	569	FKB62 "Peptidyl-prolyl cis-tra	0.879	0.140	0.444	3.2e-11
UNIPROTKB|E1C4X2	449	FKBP5 "Uncharacterized protein	0.912	0.184	0.344	2.1e-07
UNIPROTKB|Q646T7	449	FKBP51 "Uncharacterized protei	0.912	0.184	0.344	2.1e-07
UNIPROTKB|B1N302	379	EHI_051870 "70 kDa peptidyl-pr	0.791	0.189	0.375	5.6e-07

UNIPROTKB|Q7F1F2 OJ1191_A10.119 "cDNA clone:J033121G16, full insert sequence" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 237 (88.5 bits), Expect = 4.4e-19, P = 4.4e-19
 Identities = 48/85 (56%), Positives = 59/85 (69%)

Query:     2 VLDCDCHNVKALYRRAQVYMEIADLILAELDIKKAIEADPQNREVXXXXXXXXXXXAESN 61
             VL+ D  NVKALYRRAQ YM++ADL LAE+DIKKA+E DP NR+V            E N
Sbjct:   481 VLELDSQNVKALYRRAQAYMQLADLELAEVDIKKALEIDPDNRDVKLTYKNLKEKVKEYN 540

Query:    62 KRDAKFYANMFARVTKDSSVATKVG 86
             K+DAKFY+NMFA++TK  +   K G
Sbjct:   541 KKDAKFYSNMFAKMTKQPAEDGKAG 565

GO:0000413 "protein peptidyl-prolyl isomerization" evidence=ISS

GO:0003755 "peptidyl-prolyl cis-trans isomerase activity" evidence=ISS

GO:0005528 "FK506 binding" evidence=ISS

GO:0016020 "membrane" evidence=ISS

GO:0018208 "peptidyl-proline modification" evidence=ISS

TAIR|locus:2037650 TPR6 "AT1G58450" [Arabidopsis thaliana (taxid:3702)]

 Score = 221 (82.9 bits), Expect = 2.8e-18, P = 2.8e-18
 Identities = 44/72 (61%), Positives = 53/72 (73%)

Query:     2 VLDCDCHNVKALYRRAQVYMEIADLILAELDIKKAIEADPQNREVXXXXXXXXXXXAESN 61
             VLD +  NVKALYRRAQ Y+E+ DLI AE+DI +A+EADP+NREV           AES+
Sbjct:    84 VLDIEFQNVKALYRRAQSYIEVGDLISAEMDINRALEADPENREVKSLYKAMKLSKAESD 143

Query:    62 KRDAKFYANMFA 73
             +RDAK YANMFA
Sbjct:   144 RRDAKLYANMFA 155

GO:0003755 "peptidyl-prolyl cis-trans isomerase activity" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISM

UNIPROTKB|Q9XFE4 OSJNBa0091C07.4 "OSJNBa0091C07.4 protein" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 215 (80.7 bits), Expect = 1.1e-16, P = 1.1e-16
 Identities = 44/76 (57%), Positives = 52/76 (68%)

Query:     2 VLDCDCHNVKALYRRAQVYMEIADLILAELDIKKAIEADPQNREVXXXXXXXXXXXAESN 61
             VL+ +  NVKALYRR Q Y+E+ADL LAELD+KKA+E DP NR+V            E N
Sbjct:   486 VLELESTNVKALYRRTQAYIELADLELAELDVKKALEIDPDNRDVKMVYKTLKEKIKEYN 545

Query:    62 KRDAKFYANMFARVTK 77
             KRDAKFY NMFA+  K
Sbjct:   546 KRDAKFYGNMFAKWRK 561

GO:0000413 "protein peptidyl-prolyl isomerization" evidence=ISS

GO:0003755 "peptidyl-prolyl cis-trans isomerase activity" evidence=ISS

GO:0005528 "FK506 binding" evidence=ISS

GO:0016020 "membrane" evidence=ISS

GO:0018208 "peptidyl-proline modification" evidence=ISS

TAIR|locus:2090265 ROF1 "AT3G25230" [Arabidopsis thaliana (taxid:3702)]

 Score = 211 (79.3 bits), Expect = 2.7e-16, P = 2.7e-16
 Identities = 42/74 (56%), Positives = 52/74 (70%)

Query:     2 VLDCDCHNVKALYRRAQVYMEIADLILAELDIKKAIEADPQNREVXXXXXXXXXXXAESN 61
             VL+ +  NVKALYRRAQ YME++DL LAE D+KKA+E DP NREV            E N
Sbjct:   475 VLELESTNVKALYRRAQAYMELSDLDLAEFDVKKALEIDPNNREVKLEQKRLKEKMKEFN 534

Query:    62 KRDAKFYANMFARV 75
             K++AKFY NMFA++
Sbjct:   535 KKEAKFYGNMFAKL 548

GO:0000413 "protein peptidyl-prolyl isomerization" evidence=IBA

GO:0003755 "peptidyl-prolyl cis-trans isomerase activity" evidence=ISS;IBA

GO:0005528 "FK506 binding" evidence=ISS;IBA

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0016020 "membrane" evidence=IBA

GO:0018208 "peptidyl-proline modification" evidence=IBA

GO:0005516 "calmodulin binding" evidence=ISS

GO:0046686 "response to cadmium ion" evidence=IEP

GO:0005515 "protein binding" evidence=IPI

GO:0005737 "cytoplasm" evidence=IDA

GO:0009408 "response to heat" evidence=RCA;IMP

GO:0070370 "cellular heat acclimation" evidence=IMP

GO:0005829 "cytosol" evidence=IDA

GO:0006457 "protein folding" evidence=RCA

GO:0006499 "N-terminal protein myristoylation" evidence=RCA

GO:0009644 "response to high light intensity" evidence=RCA

GO:0034976 "response to endoplasmic reticulum stress" evidence=RCA

GO:0042542 "response to hydrogen peroxide" evidence=RCA

GO:0006970 "response to osmotic stress" evidence=IMP

GO:0009845 "seed germination" evidence=IMP

GO:0032266 "phosphatidylinositol-3-phosphate binding" evidence=IDA

GO:0071944 "cell periphery" evidence=IDA

GO:0080025 "phosphatidylinositol-3,5-bisphosphate binding" evidence=IDA

GO:0009611 "response to wounding" evidence=IEP

TAIR|locus:2152561 ROF2 "AT5G48570" [Arabidopsis thaliana (taxid:3702)]

 Score = 205 (77.2 bits), Expect = 1.3e-15, P = 1.3e-15
 Identities = 41/74 (55%), Positives = 51/74 (68%)

Query:     2 VLDCDCHNVKALYRRAQVYMEIADLILAELDIKKAIEADPQNREVXXXXXXXXXXXAESN 61
             VL+ D  NVKA+YRRA  Y+E ADL LAELDIKKA+E DP N+EV            E N
Sbjct:   485 VLEMDSRNVKAMYRRAHAYLETADLDLAELDIKKALEIDPDNKEVKIEYKKLKEKVKEYN 544

Query:    62 KRDAKFYANMFARV 75
             K+DAKFY+NM +++
Sbjct:   545 KKDAKFYSNMLSKM 558

GO:0000413 "protein peptidyl-prolyl isomerization" evidence=IBA

GO:0003755 "peptidyl-prolyl cis-trans isomerase activity" evidence=ISS;IBA

GO:0005528 "FK506 binding" evidence=ISS;IBA

GO:0005634 "nucleus" evidence=ISM

GO:0006457 "protein folding" evidence=IEA;RCA

GO:0016020 "membrane" evidence=IBA

GO:0018208 "peptidyl-proline modification" evidence=IBA

GO:0005516 "calmodulin binding" evidence=ISS

GO:0005773 "vacuole" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0070370 "cellular heat acclimation" evidence=IMP

GO:0006499 "N-terminal protein myristoylation" evidence=RCA

GO:0009408 "response to heat" evidence=RCA

GO:0009644 "response to high light intensity" evidence=RCA

GO:0034976 "response to endoplasmic reticulum stress" evidence=RCA

GO:0042542 "response to hydrogen peroxide" evidence=RCA

UNIPROTKB|Q6K5Q1 P0579G08.8 "Putative peptidylprolyl isomerase" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 178 (67.7 bits), Expect = 1.3e-12, P = 1.3e-12
 Identities = 37/85 (43%), Positives = 50/85 (58%)

Query:     2 VLDCDCHNVKALYRRAQVYMEIADLILAELDIKKAIEADPQNREVXXXXXXXXXXXAESN 61
             VL+ D  NVKA YRRAQ +M + D  LAELDIKKA+E DP NR+V            E  
Sbjct:   531 VLELDSMNVKAFYRRAQAHMYLVDFDLAELDIKKALEIDPDNRDVKMGYRRLKEKVKEQK 590

Query:    62 KRDAKFYANMFARVTKDSSVATKVG 86
             +++ K Y NM ++++K     T+ G
Sbjct:   591 RKETKLYGNMISKLSKLEDSETEGG 615

GO:0000413 "protein peptidyl-prolyl isomerization" evidence=ISS

GO:0003755 "peptidyl-prolyl cis-trans isomerase activity" evidence=ISS

GO:0005528 "FK506 binding" evidence=ISS

GO:0016020 "membrane" evidence=ISS

GO:0018208 "peptidyl-proline modification" evidence=ISS

UNIPROTKB|A8J0I6 FKB62 "Peptidyl-prolyl cis-trans isomerase, FKBP-type" [Chlamydomonas reinhardtii (taxid:3055)]

 Score = 164 (62.8 bits), Expect = 3.2e-11, P = 3.2e-11
 Identities = 36/81 (44%), Positives = 50/81 (61%)

Query:     2 VLDCDCHNVKALYRRAQVYMEIADLILAELDIKKAIEADPQNREVXXXXXXXXXXXAESN 61
             VLD D  +VKALYRRAQ +M +AD   AE D+K+A+E +P + +V            E N
Sbjct:   453 VLDIDPTSVKALYRRAQAHMGMADFFEAEQDVKRALELEPDSADVLALQRRLKAAQREQN 512

Query:    62 KRDAKFYANMFARVTKDSSVA 82
             K++AK Y+ MFA   K ++VA
Sbjct:   513 KKEAKLYSKMFA-APKVAAVA 532

GO:0000413 "protein peptidyl-prolyl isomerization" evidence=ISS

GO:0003755 "peptidyl-prolyl cis-trans isomerase activity" evidence=ISS

GO:0005528 "FK506 binding" evidence=ISS

GO:0016020 "membrane" evidence=ISS

GO:0018208 "peptidyl-proline modification" evidence=ISS

UNIPROTKB|E1C4X2 FKBP5 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 127 (49.8 bits), Expect = 2.1e-07, P = 2.1e-07
 Identities = 30/87 (34%), Positives = 45/87 (51%)

Query:     3 LDCDCHNVKALYRRAQVYMEIADLILAELDIKKAIEADPQNREVXXXXXXXXXXXAESNK 62
             L  D  N K LYRR +  + + +  LA+ D +K +E +PQN+              E N+
Sbjct:   344 LGLDQDNEKGLYRRGEARLLMNEFELAKCDFQKVLEVNPQNKAARSQISICQKKTKEHNE 403

Query:    63 RDAKFYANMFA----RVTKDSSVATKV 85
             RD + YANMFA    R  K+++  T+V
Sbjct:   404 RDRRIYANMFAKFAERDAKEAASKTRV 430

GO:0006457 "protein folding" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0031072 "heat shock protein binding" evidence=IEA

UNIPROTKB|Q646T7 FKBP51 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 127 (49.8 bits), Expect = 2.1e-07, P = 2.1e-07
 Identities = 30/87 (34%), Positives = 45/87 (51%)

Query:     3 LDCDCHNVKALYRRAQVYMEIADLILAELDIKKAIEADPQNREVXXXXXXXXXXXAESNK 62
             L  D  N K LYRR +  + + +  LA+ D +K +E +PQN+              E N+
Sbjct:   344 LGLDQDNEKGLYRRGEARLLMNEFELAKCDFQKVLEVNPQNKAARSQISICQKKTKEHNE 403

Query:    63 RDAKFYANMFA----RVTKDSSVATKV 85
             RD + YANMFA    R  K+++  T+V
Sbjct:   404 RDRRIYANMFAKFAERDAKEAASKTRV 430

GO:0006457 "protein folding" evidence=IEA

GO:0018208 "peptidyl-proline modification" evidence=IBA

GO:0003755 "peptidyl-prolyl cis-trans isomerase activity" evidence=IBA

GO:0005528 "FK506 binding" evidence=IBA

GO:0016020 "membrane" evidence=IBA

GO:0000413 "protein peptidyl-prolyl isomerization" evidence=IBA

UNIPROTKB|B1N302 EHI_051870 "70 kDa peptidyl-prolyl isomerase, putative" [Entamoeba histolytica (taxid:5759)]

 Score = 122 (48.0 bits), Expect = 5.6e-07, P = 5.6e-07
 Identities = 27/72 (37%), Positives = 35/72 (48%)

Query:     2 VLDCDCHNVKALYRRAQVYMEIADLILAELDIKKAIEADPQNREVXXXXXXXXXXXAESN 61
             VL  D  N+KAL RR + Y+E   +  AE D  K +  DP N+EV            E  
Sbjct:   243 VLAVDAENLKALLRRGKAYLEKGQVEKAESDFNKVLSIDPNNKEVKYEMNGIKRKRMEEE 302

Query:    62 KRDAKFYANMFA 73
             K D + YA MF+
Sbjct:   303 KNDKRRYAKMFS 314

GO:0000413 "protein peptidyl-prolyl isomerization" evidence=ISS

GO:0003755 "peptidyl-prolyl cis-trans isomerase activity" evidence=ISS

GO:0005528 "FK506 binding" evidence=ISS

GO:0016020 "membrane" evidence=ISS

GO:0018208 "peptidyl-proline modification" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	91
KOG0543	397	consensus FKBP-type peptidyl-prolyl cis-trans isom	99.8
COG3063	250	PilF Tfp pilus assembly protein PilF [Cell motilit	99.43
KOG0545	329	consensus Aryl-hydrocarbon receptor-interacting pr	99.29
KOG0553	304	consensus TPR repeat-containing protein [General f	99.28
KOG4234	271	consensus TPR repeat-containing protein [General f	99.22
KOG0553	304	consensus TPR repeat-containing protein [General f	99.11
PRK15359	144	type III secretion system chaperone protein SscB;	99.02
PF00515	34	TPR_1: Tetratricopeptide repeat; InterPro: IPR0014	99.01
PF13414	69	TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A	98.97
KOG0548	539	consensus Molecular co-chaperone STI1 [Posttransla	98.94
PF13414	69	TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A	98.94
PLN03088	356	SGT1, suppressor of G2 allele of SKP1; Provisional	98.93
PRK15359	144	type III secretion system chaperone protein SscB;	98.91
PF13371	73	TPR_9: Tetratricopeptide repeat	98.89
PF07719	34	TPR_2: Tetratricopeptide repeat; InterPro: IPR0131	98.89
PF13432	65	TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL	98.88
PF14853	53	Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe	98.86
KOG0546	372	consensus HSP90 co-chaperone CPR7/Cyclophilin [Pos	98.82
PLN03088	356	SGT1, suppressor of G2 allele of SKP1; Provisional	98.82
PF13428	44	TPR_14: Tetratricopeptide repeat	98.82
PRK10370	198	formate-dependent nitrite reductase complex subuni	98.81
PRK11189	296	lipoprotein NlpI; Provisional	98.75
KOG0547	606	consensus Translocase of outer mitochondrial membr	98.74
KOG0548	539	consensus Molecular co-chaperone STI1 [Posttransla	98.74
PF14559	68	TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN	98.73
TIGR00990	615	3a0801s09 mitochondrial precursor proteins import	98.7
TIGR02552	135	LcrH_SycD type III secretion low calcium response	98.7
PF13431	34	TPR_17: Tetratricopeptide repeat	98.68
KOG0550	486	consensus Molecular chaperone (DnaJ superfamily) [	98.65
KOG0376	476	consensus Serine-threonine phosphatase 2A, catalyt	98.64
PLN02789	320	farnesyltranstransferase	98.62
TIGR02552	135	LcrH_SycD type III secretion low calcium response	98.61
COG3063	250	PilF Tfp pilus assembly protein PilF [Cell motilit	98.58
KOG0624	504	consensus dsRNA-activated protein kinase inhibitor	98.58
PRK12370	553	invasion protein regulator; Provisional	98.57
KOG0624	504	consensus dsRNA-activated protein kinase inhibitor	98.57
PRK15363	157	pathogenicity island 2 chaperone protein SscA; Pro	98.56
PF13432	65	TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL	98.54
PF13181	34	TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_	98.53
PLN02789	320	farnesyltranstransferase	98.52
PRK09782	987	bacteriophage N4 receptor, outer membrane subunit;	98.51
PLN03098	453	LPA1 LOW PSII ACCUMULATION1; Provisional	98.5
COG4235	287	Cytochrome c biogenesis factor [Posttranslational	98.48
TIGR00990	615	3a0801s09 mitochondrial precursor proteins import	98.46
KOG4626	966	consensus O-linked N-acetylglucosamine transferase	98.45
PRK10370	198	formate-dependent nitrite reductase complex subuni	98.43
PRK11189	296	lipoprotein NlpI; Provisional	98.43
KOG4648	536	consensus Uncharacterized conserved protein, conta	98.41
KOG1126	638	consensus DNA-binding cell division cycle control	98.41
PRK12370	553	invasion protein regulator; Provisional	98.4
PRK15179	694	Vi polysaccharide biosynthesis protein TviE; Provi	98.38
cd00189	100	TPR Tetratricopeptide repeat domain; typically con	98.38
PRK09782	987	bacteriophage N4 receptor, outer membrane subunit;	98.35
PRK15179	694	Vi polysaccharide biosynthesis protein TviE; Provi	98.35
COG5010	257	TadD Flp pilus assembly protein TadD, contains TPR	98.34
COG5010	257	TadD Flp pilus assembly protein TadD, contains TPR	98.29
PRK15174	656	Vi polysaccharide export protein VexE; Provisional	98.24
TIGR02795	119	tol_pal_ybgF tol-pal system protein YbgF. Members	98.22
KOG1155	559	consensus Anaphase-promoting complex (APC), Cdc23	98.2
TIGR02521	234	type_IV_pilW type IV pilus biogenesis/stability pr	98.18
PF13429	280	TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2	98.17
smart00028	34	TPR Tetratricopeptide repeats. Repeats present in	98.17
PF13174	33	TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_	98.17
TIGR02917	899	PEP_TPR_lipo putative PEP-CTERM system TPR-repeat	98.16
PF06552	186	TOM20_plant: Plant specific mitochondrial import r	98.14
KOG0547	606	consensus Translocase of outer mitochondrial membr	98.14
PF12895	84	Apc3: Anaphase-promoting complex, cyclosome, subun	98.08
PRK15174	656	Vi polysaccharide export protein VexE; Provisional	98.07
PRK10803	263	tol-pal system protein YbgF; Provisional	98.06
PRK15363	157	pathogenicity island 2 chaperone protein SscA; Pro	98.04
cd00189	100	TPR Tetratricopeptide repeat domain; typically con	98.01
KOG4626	966	consensus O-linked N-acetylglucosamine transferase	98.0
TIGR02521	234	type_IV_pilW type IV pilus biogenesis/stability pr	97.98
PRK10049	765	pgaA outer membrane protein PgaA; Provisional	97.98
TIGR02917	899	PEP_TPR_lipo putative PEP-CTERM system TPR-repeat	97.98
KOG1125	579	consensus TPR repeat-containing protein [General f	97.97
PRK02603	172	photosystem I assembly protein Ycf3; Provisional	97.96
CHL00033	168	ycf3 photosystem I assembly protein Ycf3	97.95
PF13176	36	TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_	97.94
PF14559	68	TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN	97.94
PRK10049	765	pgaA outer membrane protein PgaA; Provisional	97.94
TIGR03302	235	OM_YfiO outer membrane assembly lipoprotein YfiO.	97.93
KOG1128	777	consensus Uncharacterized conserved protein, conta	97.89
KOG1126	638	consensus DNA-binding cell division cycle control	97.83
PF13371	73	TPR_9: Tetratricopeptide repeat	97.82
KOG0550	486	consensus Molecular chaperone (DnaJ superfamily) [	97.82
KOG4234	271	consensus TPR repeat-containing protein [General f	97.81
TIGR03302	235	OM_YfiO outer membrane assembly lipoprotein YfiO.	97.81
KOG1155	559	consensus Anaphase-promoting complex (APC), Cdc23	97.79
PRK11906	458	transcriptional regulator; Provisional	97.78
PRK11447	1157	cellulose synthase subunit BcsC; Provisional	97.77
TIGR02795	119	tol_pal_ybgF tol-pal system protein YbgF. Members	97.76
KOG0543	397	consensus FKBP-type peptidyl-prolyl cis-trans isom	97.76
PF14561	90	TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S	97.75
KOG1174	564	consensus Anaphase-promoting complex (APC), subuni	97.74
KOG3364	149	consensus Membrane protein involved in organellar	97.74
PRK11447	1157	cellulose synthase subunit BcsC; Provisional	97.73
PRK02603	172	photosystem I assembly protein Ycf3; Provisional	97.73
PF13429	280	TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2	97.72
KOG0551	390	consensus Hsp90 co-chaperone CNS1 (contains TPR re	97.71
PRK11788	389	tetratricopeptide repeat protein; Provisional	97.7
COG4235	287	Cytochrome c biogenesis factor [Posttranslational	97.67
PF13424	78	TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15	97.65
PLN03098	453	LPA1 LOW PSII ACCUMULATION1; Provisional	97.65
KOG4162	799	consensus Predicted calmodulin-binding protein [Si	97.62
KOG2076	895	consensus RNA polymerase III transcription factor	97.6
KOG1173	611	consensus Anaphase-promoting complex (APC), Cdc16	97.58
COG4783	484	Putative Zn-dependent protease, contains TPR repea	97.54
PRK10153	517	DNA-binding transcriptional activator CadC; Provis	97.5
KOG1125	579	consensus TPR repeat-containing protein [General f	97.5
CHL00033	168	ycf3 photosystem I assembly protein Ycf3	97.42
PRK11788	389	tetratricopeptide repeat protein; Provisional	97.42
PRK10153	517	DNA-binding transcriptional activator CadC; Provis	97.41
KOG4555	175	consensus TPR repeat-containing protein [Function	97.37
TIGR00540	409	hemY_coli hemY protein. This is an uncharacterized	97.36
KOG4642	284	consensus Chaperone-dependent E3 ubiquitin protein	97.35
PRK14720	906	transcript cleavage factor/unknown domain fusion p	97.34
PRK10747	398	putative protoheme IX biogenesis protein; Provisio	97.31
KOG2076	895	consensus RNA polymerase III transcription factor	97.26
KOG4642	284	consensus Chaperone-dependent E3 ubiquitin protein	97.26
cd05804	355	StaR_like StaR_like; a well-conserved protein foun	97.22
PF12895	84	Apc3: Anaphase-promoting complex, cyclosome, subun	97.21
KOG1156	700	consensus N-terminal acetyltransferase [Chromatin	97.21
PF06552	186	TOM20_plant: Plant specific mitochondrial import r	97.2
PRK15331	165	chaperone protein SicA; Provisional	97.19
KOG4162	799	consensus Predicted calmodulin-binding protein [Si	97.18
PRK14574	822	hmsH outer membrane protein; Provisional	97.15
KOG1127	1238	consensus TPR repeat-containing protein [RNA proce	97.14
PF13431	34	TPR_17: Tetratricopeptide repeat	97.14
PF04733	290	Coatomer_E: Coatomer epsilon subunit; InterPro: IP	97.11
KOG4648	536	consensus Uncharacterized conserved protein, conta	97.09
COG4976	287	Predicted methyltransferase (contains TPR repeat)	97.09
COG1729	262	Uncharacterized protein conserved in bacteria [Fun	97.09
PF12569	517	NARP1: NMDA receptor-regulated protein 1 ; InterPr	97.07
KOG0376	476	consensus Serine-threonine phosphatase 2A, catalyt	97.07
PRK11906	458	transcriptional regulator; Provisional	97.04
PF10516	38	SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetrat	97.03
COG2956	389	Predicted N-acetylglucosaminyl transferase [Carboh	97.0
PF03704	146	BTAD: Bacterial transcriptional activator domain;	96.99
KOG3824	472	consensus Huntingtin interacting protein HYPE [Gen	96.93
PRK10803	263	tol-pal system protein YbgF; Provisional	96.92
COG4785	297	NlpI Lipoprotein NlpI, contains TPR repeats [Gener	96.91
KOG2003	840	consensus TPR repeat-containing protein [General f	96.9
KOG1308	377	consensus Hsp70-interacting protein Hip/Transient	96.87
KOG1308	377	consensus Hsp70-interacting protein Hip/Transient	96.87
cd05804	355	StaR_like StaR_like; a well-conserved protein foun	96.86
PRK10941	269	hypothetical protein; Provisional	96.86
COG4785	297	NlpI Lipoprotein NlpI, contains TPR repeats [Gener	96.84
PF12688	120	TPR_5: Tetratrico peptide repeat	96.84
PF07720	36	TPR_3: Tetratricopeptide repeat; InterPro: IPR0117	96.81
PF13525	203	YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M	96.79
PF13374	42	TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT	96.79
PRK10747	398	putative protoheme IX biogenesis protein; Provisio	96.78
PF13424	78	TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15	96.78
KOG2002	1018	consensus TPR-containing nuclear phosphoprotein th	96.76
PRK10866	243	outer membrane biogenesis protein BamD; Provisiona	96.75
KOG2002	1018	consensus TPR-containing nuclear phosphoprotein th	96.74
TIGR00540	409	hemY_coli hemY protein. This is an uncharacterized	96.74
KOG1129	478	consensus TPR repeat-containing protein [General f	96.72
PRK14574	822	hmsH outer membrane protein; Provisional	96.72
PRK15331	165	chaperone protein SicA; Provisional	96.69
PF09295	395	ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter	96.68
PRK10866	243	outer membrane biogenesis protein BamD; Provisiona	96.65
KOG1127	1238	consensus TPR repeat-containing protein [RNA proce	96.64
PF13512	142	TPR_18: Tetratricopeptide repeat	96.5
PRK14720	906	transcript cleavage factor/unknown domain fusion p	96.5
PF12688	120	TPR_5: Tetratrico peptide repeat	96.47
TIGR03504	44	FimV_Cterm FimV C-terminal domain. This protein is	96.43
PF13525	203	YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M	96.4
PF13512	142	TPR_18: Tetratricopeptide repeat	96.35
KOG1310	758	consensus WD40 repeat protein [General function pr	96.32
PF09976	145	TPR_21: Tetratricopeptide repeat; InterPro: IPR018	96.32
PF12569	517	NARP1: NMDA receptor-regulated protein 1 ; InterPr	96.24
KOG3060	289	consensus Uncharacterized conserved protein [Funct	96.19
KOG0551	390	consensus Hsp90 co-chaperone CNS1 (contains TPR re	96.16
KOG4555	175	consensus TPR repeat-containing protein [Function	96.12
KOG1174	564	consensus Anaphase-promoting complex (APC), subuni	96.12
KOG2796	366	consensus Uncharacterized conserved protein [Funct	96.12
PF14863	141	Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB	96.05
KOG3081	299	consensus Vesicle coat complex COPI, epsilon subun	95.99
KOG4507	886	consensus Uncharacterized conserved protein, conta	95.97
KOG0545	329	consensus Aryl-hydrocarbon receptor-interacting pr	95.93
COG2912	269	Uncharacterized conserved protein [Function unknow	95.87
COG4783	484	Putative Zn-dependent protease, contains TPR repea	95.82
PF07721	26	TPR_4: Tetratricopeptide repeat; InterPro: IPR0117	95.66
KOG2396	568	consensus HAT (Half-A-TPR) repeat-containing prote	95.3
PF09976	145	TPR_21: Tetratricopeptide repeat; InterPro: IPR018	95.26
KOG1173	611	consensus Anaphase-promoting complex (APC), Cdc16	95.24
KOG0495	913	consensus HAT repeat protein [RNA processing and m	95.2
PF09295	395	ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter	95.17
KOG2003	840	consensus TPR repeat-containing protein [General f	94.78
KOG3824	472	consensus Huntingtin interacting protein HYPE [Gen	94.67
KOG2053	932	consensus Mitochondrial inheritance and actin cyto	94.61
KOG1156	700	consensus N-terminal acetyltransferase [Chromatin	94.5
KOG1128	777	consensus Uncharacterized conserved protein, conta	94.44
PF08424	321	NRDE-2: NRDE-2, necessary for RNA interference; In	94.33
KOG1840	508	consensus Kinesin light chain [Cytoskeleton]	94.23
KOG3060	289	consensus Uncharacterized conserved protein [Funct	94.22
PF03704	146	BTAD: Bacterial transcriptional activator domain;	94.17
KOG0530	318	consensus Protein farnesyltransferase, alpha subun	94.13
KOG1129	478	consensus TPR repeat-containing protein [General f	94.12
COG1729	262	Uncharacterized protein conserved in bacteria [Fun	94.09
COG4105	254	ComL DNA uptake lipoprotein [General function pred	94.04
PF12862	94	Apc5: Anaphase-promoting complex subunit 5	93.25
COG3629	280	DnrI DNA-binding transcriptional activator of the	92.94
KOG3785	557	consensus Uncharacterized conserved protein [Funct	92.87
PF12968	144	DUF3856: Domain of Unknown Function (DUF3856); Int	92.86
KOG0495	913	consensus HAT repeat protein [RNA processing and m	92.72
PF05843	280	Suf: Suppressor of forked protein (Suf); InterPro:	92.13
COG5191	435	Uncharacterized conserved protein, contains HAT (H	91.99
PF09613	160	HrpB1_HrpK: Bacterial type III secretion protein (	91.99
smart00386	33	HAT HAT (Half-A-TPR) repeats. Present in several R	91.99
COG3118	304	Thioredoxin domain-containing protein [Posttransla	91.97
KOG2376	652	consensus Signal recognition particle, subunit Srp	91.91
KOG4151	748	consensus Myosin assembly protein/sexual cycle pro	91.85
KOG1840	508	consensus Kinesin light chain [Cytoskeleton]	91.53
PHA02537	230	M terminase endonuclease subunit; Provisional	91.51
COG3947	361	Response regulator containing CheY-like receiver a	91.33
COG4105	254	ComL DNA uptake lipoprotein [General function pred	91.0
COG3071	400	HemY Uncharacterized enzyme of heme biosynthesis [	90.98
PF02064	121	MAS20: MAS20 protein import receptor; InterPro: IP	90.51
COG4700	251	Uncharacterized protein conserved in bacteria cont	90.43
cd02682	75	MIT_AAA_Arch MIT: domain contained within Microtub	90.22
PRK10941	269	hypothetical protein; Provisional	89.13
cd02683	77	MIT_1 MIT: domain contained within Microtubule Int	88.86
PF10373	278	EST1_DNA_bind: Est1 DNA/RNA binding domain; InterP	88.61
PF04184	539	ST7: ST7 protein; InterPro: IPR007311 The ST7 (for	88.33
KOG0529	421	consensus Protein geranylgeranyltransferase type I	88.24
PF04733	290	Coatomer_E: Coatomer epsilon subunit; InterPro: IP	87.77
PF14938	282	SNAP: Soluble NSF attachment protein, SNAP; PDB: 1	87.63
COG3071	400	HemY Uncharacterized enzyme of heme biosynthesis [	87.44
KOG2053	932	consensus Mitochondrial inheritance and actin cyto	87.21
PF10255	404	Paf67: RNA polymerase I-associated factor PAF67; I	86.94
cd02681	76	MIT_calpain7_1 MIT: domain contained within Microt	86.84
COG2956	389	Predicted N-acetylglucosaminyl transferase [Carboh	86.67
COG3914	620	Spy Predicted O-linked N-acetylglucosamine transfe	85.86
KOG1914	656	consensus mRNA cleavage and polyadenylation factor	85.85
PF04910	360	Tcf25: Transcriptional repressor TCF25; InterPro:	85.6
PF09986	214	DUF2225: Uncharacterized protein conserved in bact	85.38
PF04212	69	MIT: MIT (microtubule interacting and transport) d	84.74
KOG1310	758	consensus WD40 repeat protein [General function pr	84.72
KOG2376	652	consensus Signal recognition particle, subunit Srp	84.39
PF02259	352	FAT: FAT domain; InterPro: IPR003151 The FAT domai	84.28
PF10602	177	RPN7: 26S proteasome subunit RPN7; InterPro: IPR01	84.26
COG4531	318	ZnuA ABC-type Zn2+ transport system, periplasmic c	83.79
KOG2610	491	consensus Uncharacterized conserved protein [Funct	83.52
COG5091	368	SGT1 Suppressor of G2 allele of skp1 and related p	83.28
PF15469	182	Sec5: Exocyst complex component Sec5	83.01
TIGR00985	148	3a0801s04tom mitochondrial import receptor subunit	83.01
PF05843	280	Suf: Suppressor of forked protein (Suf); InterPro:	82.79
PLN03081	697	pentatricopeptide (PPR) repeat-containing protein;	82.66
cd02678	75	MIT_VPS4 MIT: domain contained within Microtubule	82.29
cd02679	79	MIT_spastin MIT: domain contained within Microtubu	81.99
KOG4340	459	consensus Uncharacterized conserved protein [Funct	81.79
KOG4056	143	consensus Translocase of outer mitochondrial membr	81.66
TIGR02561	153	HrpB1_HrpK type III secretion protein HrpB1/HrpK.	81.57
PF12854	34	PPR_1: PPR repeat	81.36
smart00745	77	MIT Microtubule Interacting and Trafficking molecu	81.07
PF13041	50	PPR_2: PPR repeat family	80.9
PF08424	321	NRDE-2: NRDE-2, necessary for RNA interference; In	80.26

>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=99.80  E-value=4.6e-19  Score=123.50  Aligned_cols=78  Identities=38%  Similarity=0.592  Sum_probs=75.0

Q ss_pred             CcccccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCC
Q 034553            1 MVLDCDCHNVKALYRRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQKSLKQLQAESNKRDAKFYANMFARVTKD   78 (91)
Q Consensus         1 ~al~~~p~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~mf~~~~~~   78 (91)
                      ++|.++|+|+||+||||+|+..+|+|+.|+.+|+++++++|+|.+|..+|..+.++++++..+++.+|++||++.+..
T Consensus       282 kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~~~~~~kekk~y~~mF~k~~~~  359 (397)
T KOG0543|consen  282 KVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQKIREYEEKEKKMYANMFAKLAEE  359 (397)
T ss_pred             HHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccc
Confidence            478999999999999999999999999999999999999999999999999999999999999999999999998754

>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=99.43  E-value=9.3e-13  Score=86.90  Aligned_cols=81  Identities=25%  Similarity=0.359  Sum_probs=75.5

Q ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCchhhhhhhhcc
Q 034553           10 VKALYRRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQKSLKQLQAESNKRDAKFYANMFARVTKDSSVATKVGYFA   89 (91)
Q Consensus        10 ~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~mf~~~~~~~~~~~~~g~f~   89 (91)
                      .++...+|..|+..|++..|..-+++||++||++..++..+..+-+.+++-.-++ +.|++..+..++..+++|||||||
T Consensus        35 a~arlqLal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~-e~YrkAlsl~p~~GdVLNNYG~FL  113 (250)
T COG3063          35 AKARLQLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLAD-ESYRKALSLAPNNGDVLNNYGAFL  113 (250)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHH-HHHHHHHhcCCCccchhhhhhHHH
Confidence            4678889999999999999999999999999999999999999999999988775 479999999999999999999999


Q ss_pred             cC
Q 034553           90 CD   91 (91)
Q Consensus        90 ~~   91 (91)
                      |.
T Consensus       114 C~  115 (250)
T COG3063         114 CA  115 (250)
T ss_pred             Hh
Confidence            94

>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]

Probab=99.29  E-value=1.8e-11  Score=81.95  Aligned_cols=73  Identities=29%  Similarity=0.335  Sum_probs=68.2

Q ss_pred             cccccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 034553            2 VLDCDCHNVKALYRRAQVYMEIADLILAELDIKKAIEADPQNR-EVKLLQKSLKQLQAESNKRDAKFYANMFAR   74 (91)
Q Consensus         2 al~~~p~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~mf~~   74 (91)
                      +|..+|+|+|||||||.|+...-+..+|..||.++|+++|.-+ .+..+|+.++.++.+.++.++-.+++||+.
T Consensus       256 iL~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldpslasvVsrElr~le~r~~ek~~edr~~~~kmfs~  329 (329)
T KOG0545|consen  256 ILRHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPSLASVVSRELRLLENRMAEKQEEDRLRCRKMFSQ  329 (329)
T ss_pred             HHhcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcCC
Confidence            5788999999999999999999999999999999999999865 789999999999999999999999999973

>KOG0553 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.28  E-value=4.2e-12  Score=86.27  Aligned_cols=61  Identities=31%  Similarity=0.259  Sum_probs=56.7

Q ss_pred             CcccccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH
Q 034553            1 MVLDCDCHNVKALYRRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQKSLKQLQAESN   61 (91)
Q Consensus         1 ~al~~~p~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~   61 (91)
                      +||.+||.++|+|-|+|.|++.+|++++|++.|++||+|+|+|...+..|..++..+.+..
T Consensus       140 ~Al~iDp~yskay~RLG~A~~~~gk~~~A~~aykKaLeldP~Ne~~K~nL~~Ae~~l~e~~  200 (304)
T KOG0553|consen  140 SALSIDPHYSKAYGRLGLAYLALGKYEEAIEAYKKALELDPDNESYKSNLKIAEQKLNEPK  200 (304)
T ss_pred             HHHhcChHHHHHHHHHHHHHHccCcHHHHHHHHHhhhccCCCcHHHHHHHHHHHHHhcCCC
Confidence            3789999999999999999999999999999999999999999999999999999887765

>KOG4234 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.22  E-value=6.4e-11  Score=77.48  Aligned_cols=66  Identities=29%  Similarity=0.316  Sum_probs=61.9

Q ss_pred             CcccccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 034553            1 MVLDCDCHNVKALYRRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQKSLKQLQAESNKRDAK   66 (91)
Q Consensus         1 ~al~~~p~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~~~   66 (91)
                      +||+++|.+.+|+.|||.+|..+..|++|+.||++.++++|...+++..+.++...+.+..++-+.
T Consensus       159 Kaiel~pty~kAl~RRAeayek~ek~eealeDyKki~E~dPs~~ear~~i~rl~~~i~ernEkmKe  224 (271)
T KOG4234|consen  159 KAIELNPTYEKALERRAEAYEKMEKYEEALEDYKKILESDPSRREAREAIARLPPKINERNEKMKE  224 (271)
T ss_pred             hhHhcCchhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCcchHHHHHHHHhcCHHHHHHHHHHHH
Confidence            589999999999999999999999999999999999999999999999999999999888876553

>KOG0553 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.11  E-value=2.1e-10  Score=78.10  Aligned_cols=85  Identities=14%  Similarity=0.094  Sum_probs=74.9

Q ss_pred             CcccccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCch
Q 034553            1 MVLDCDCHNVKALYRRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQKSLKQLQAESNKRDAKFYANMFARVTKDSS   80 (91)
Q Consensus         1 ~al~~~p~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~mf~~~~~~~~   80 (91)
                      +||+++|.|+--|-.||.||.+||.|+.|++|++.|+.+||....+...|..+...++.+.++.. .|++.+...+....
T Consensus       106 ~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~~A~~-aykKaLeldP~Ne~  184 (304)
T KOG0553|consen  106 EAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYEEAIE-AYKKALELDPDNES  184 (304)
T ss_pred             HHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHHHHHH-HHHhhhccCCCcHH
Confidence            47999999999999999999999999999999999999999999999999999999999988865 48998888766554


Q ss_pred             hhhhhh
Q 034553           81 VATKVG   86 (91)
Q Consensus        81 ~~~~~g   86 (91)
                      ..++++
T Consensus       185 ~K~nL~  190 (304)
T KOG0553|consen  185 YKSNLK  190 (304)
T ss_pred             HHHHHH
Confidence            444443

>PRK15359 type III secretion system chaperone protein SscB; Provisional

Probab=99.02  E-value=1.9e-09  Score=66.69  Aligned_cols=84  Identities=12%  Similarity=0.019  Sum_probs=63.3

Q ss_pred             cccccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCchh
Q 034553            2 VLDCDCHNVKALYRRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQKSLKQLQAESNKRDAKFYANMFARVTKDSSV   81 (91)
Q Consensus         2 al~~~p~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~mf~~~~~~~~~   81 (91)
                      ++.++|.+..+|+.+|.++..+|++++|+..|+++++++|++..+...+..+....++..++. ..+.......+.....
T Consensus        50 al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~~~a~~~lg~~l~~~g~~~eAi-~~~~~Al~~~p~~~~~  128 (144)
T PRK15359         50 LVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDASHPEPVYQTGVCLKMMGEPGLAR-EAFQTAIKMSYADASW  128 (144)
T ss_pred             HHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHH-HHHHHHHHhCCCChHH
Confidence            567888888888888888888888888888888888888888888888888888887777764 3566666655544444


Q ss_pred             hhhhh
Q 034553           82 ATKVG   86 (91)
Q Consensus        82 ~~~~g   86 (91)
                      .++.|
T Consensus       129 ~~~~~  133 (144)
T PRK15359        129 SEIRQ  133 (144)
T ss_pred             HHHHH
Confidence            43333

>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=99.01  E-value=1e-09  Score=51.92  Aligned_cols=34  Identities=29%  Similarity=0.458  Sum_probs=31.3

Q ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCC
Q 034553           10 VKALYRRAQVYMEIADLILAELDIKKAIEADPQN   43 (91)
Q Consensus        10 ~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~   43 (91)
                      +++|+++|.++..+|++++|+..|+++++++|++
T Consensus         1 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~   34 (34)
T PF00515_consen    1 AEAYYNLGNAYFQLGDYEEALEYYQRALELDPDN   34 (34)
T ss_dssp             HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTH
T ss_pred             CHHHHHHHHHHHHhCCchHHHHHHHHHHHHCcCC
Confidence            4789999999999999999999999999999974

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....

>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A

Probab=98.97  E-value=4.5e-10  Score=60.80  Aligned_cols=65  Identities=23%  Similarity=0.206  Sum_probs=55.4

Q ss_pred             CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH-HHHHHHHHHHHHhhh
Q 034553            8 HNVKALYRRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQKSLKQLQA-ESNKRDAKFYANMFA   73 (91)
Q Consensus         8 ~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~-~~~~~~~~~~~~mf~   73 (91)
                      +++..|+.+|.+++..|+|++|+..|+++++++|++..+...+..+...++ ...+... .+.+..+
T Consensus         1 e~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~-~~~~al~   66 (69)
T PF13414_consen    1 ENAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIE-DFEKALK   66 (69)
T ss_dssp             TSHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHH-HHHHHHH
T ss_pred             CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHH-HHHHHHH
Confidence            368899999999999999999999999999999999999999999999998 6666533 4454443

...

>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]

Probab=98.94  E-value=1.9e-09  Score=77.84  Aligned_cols=53  Identities=19%  Similarity=0.192  Sum_probs=51.2

Q ss_pred             cccccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Q 034553            2 VLDCDCHNVKALYRRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQKSLK   54 (91)
Q Consensus         2 al~~~p~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~~~~~l~~~~   54 (91)
                      +++++|+++|+|+|.|.++..+|+|++|+..|.++|+++|+|+.+...|..+.
T Consensus        62 ~~~l~p~w~kgy~r~Gaa~~~lg~~~eA~~ay~~GL~~d~~n~~L~~gl~~a~  114 (539)
T KOG0548|consen   62 TRRLNPDWAKGYSRKGAALFGLGDYEEAILAYSEGLEKDPSNKQLKTGLAQAY  114 (539)
T ss_pred             HHhcCCchhhHHHHhHHHHHhcccHHHHHHHHHHHhhcCCchHHHHHhHHHhh
Confidence            57899999999999999999999999999999999999999999999998888

>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A

Probab=98.94  E-value=1.2e-08  Score=55.06  Aligned_cols=41  Identities=32%  Similarity=0.474  Sum_probs=39.1

Q ss_pred             CcccccCCCHHHHHHHHHHHHHhC-CHHHHHHHHHHHHHHCC
Q 034553            1 MVLDCDCHNVKALYRRAQVYMEIA-DLILAELDIKKAIEADP   41 (91)
Q Consensus         1 ~al~~~p~~~ka~~rrg~a~~~lg-~~~~A~~~~~~al~l~p   41 (91)
                      ++|+++|+++.+|+++|.++..+| ++++|+.+++++++++|
T Consensus        28 ~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P   69 (69)
T PF13414_consen   28 KAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP   69 (69)
T ss_dssp             HHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred             HHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence            368899999999999999999999 79999999999999998

...

>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional

Probab=98.93  E-value=4.3e-09  Score=73.60  Aligned_cols=59  Identities=20%  Similarity=0.265  Sum_probs=51.4

Q ss_pred             cccccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH
Q 034553            2 VLDCDCHNVKALYRRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQKSLKQLQAES   60 (91)
Q Consensus         2 al~~~p~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~   60 (91)
                      ||+++|+++.+|+++|.+++.+|+|++|+..|+++++++|++..+...+..+...+...
T Consensus        62 Al~l~P~~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~kl~~~  120 (356)
T PLN03088         62 AIELDPSLAKAYLRKGTACMKLEEYQTAKAALEKGASLAPGDSRFTKLIKECDEKIAEE  120 (356)
T ss_pred             HHHhCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhh
Confidence            67888999999999999999999999999999999999999998888888888888554

>PRK15359 type III secretion system chaperone protein SscB; Provisional

Probab=98.91  E-value=7.6e-09  Score=63.96  Aligned_cols=59  Identities=12%  Similarity=0.129  Sum_probs=53.1

Q ss_pred             CcccccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH
Q 034553            1 MVLDCDCHNVKALYRRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQKSLKQLQAE   59 (91)
Q Consensus         1 ~al~~~p~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~   59 (91)
                      +++.++|+++.+++++|.++..+|++++|+..|+++++++|++......+..+...+..
T Consensus        83 ~Al~l~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~~~l~~  141 (144)
T PRK15359         83 HALMLDASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQNAQIMVDT  141 (144)
T ss_pred             HHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHH
Confidence            36789999999999999999999999999999999999999999988887777666543

>PF13371 TPR_9: Tetratricopeptide repeat

Probab=98.89  E-value=3.8e-09  Score=57.62  Aligned_cols=51  Identities=20%  Similarity=0.341  Sum_probs=46.2

Q ss_pred             cccccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHH
Q 034553            2 VLDCDCHNVKALYRRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQKS   52 (91)
Q Consensus         2 al~~~p~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~~~~~l~~   52 (91)
                      ++.++|+++.+|+.+|.++..+|++++|+.+|+++++++|++..+......
T Consensus        21 ~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~~a~   71 (73)
T PF13371_consen   21 ALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARALRAM   71 (73)
T ss_pred             HHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHHHHHh
Confidence            578899999999999999999999999999999999999998877665544

>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=98.89  E-value=7.8e-09  Score=48.57  Aligned_cols=34  Identities=32%  Similarity=0.426  Sum_probs=31.4

Q ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCC
Q 034553           10 VKALYRRAQVYMEIADLILAELDIKKAIEADPQN   43 (91)
Q Consensus        10 ~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~   43 (91)
                      +++|+.+|.+++.+|++++|+..|+++++++|+|
T Consensus         1 a~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~   34 (34)
T PF07719_consen    1 AEAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN   34 (34)
T ss_dssp             HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred             CHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence            4789999999999999999999999999999986

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....

>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B

Probab=98.88  E-value=5e-09  Score=56.11  Aligned_cols=57  Identities=19%  Similarity=0.218  Sum_probs=27.9

Q ss_pred             HHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 034553           15 RRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQKSLKQLQAESNKRDAKFYANMF   72 (91)
Q Consensus        15 rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~mf   72 (91)
                      .+|.+++..|+|++|+..|+++++.+|++..++..+..+....++..++. ..+..+.
T Consensus         2 ~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~-~~~~~a~   58 (65)
T PF13432_consen    2 ALARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEAL-AYYERAL   58 (65)
T ss_dssp             HHHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHH-HHHHHHH
T ss_pred             hHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHH-HHHHHHH
Confidence            34455555555555555555555555555555555555555555544443 3344433

>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A

Probab=98.86  E-value=4.2e-08  Score=51.33  Aligned_cols=49  Identities=18%  Similarity=0.237  Sum_probs=42.9

Q ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH
Q 034553           11 KALYRRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQKSLKQLQAE   59 (91)
Q Consensus        11 ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~   59 (91)
                      +.+|..|.+++++|+|+.|...++.+|+++|+|..+......++.++..
T Consensus         2 d~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~L~~~i~~~i~k   50 (53)
T PF14853_consen    2 DCLYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQSLKELIEDKIQK   50 (53)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHhc
Confidence            4689999999999999999999999999999999999998888877653

>KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones]

Probab=98.82  E-value=1.7e-08  Score=70.18  Aligned_cols=72  Identities=26%  Similarity=0.385  Sum_probs=68.1

Q ss_pred             cccccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 034553            2 VLDCDCHNVKALYRRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQKSLKQLQAESNKRDAKFYANMFA   73 (91)
Q Consensus         2 al~~~p~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~mf~   73 (91)
                      +++.+++..++||||+.+++.+.++++|+.++..+....|++..+...+..+.+.++++.++++..+.+||+
T Consensus       301 ~~~~~~s~tka~~Rr~~~~~~~~~~~~a~~~~~~a~~~~p~d~~i~~~~~~~~~~~~~~~~~~~~~~~k~~s  372 (372)
T KOG0546|consen  301 ALRDERSKTKAHYRRGQAYKLLKNYDEALEDLKKAKQKAPNDKAIEEELENVRQKKKQYNRKQKKALSKMFS  372 (372)
T ss_pred             ccccChhhCcHHHHHHhHHHhhhchhhhHHHHHHhhccCcchHHHHHHHHHhhhHHHHHHHHHHHHHHhhcC
Confidence            466789999999999999999999999999999999999999999999999999999999999988999884

>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional

Probab=98.82  E-value=3.2e-08  Score=69.23  Aligned_cols=77  Identities=23%  Similarity=0.196  Sum_probs=66.3

Q ss_pred             CcccccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCC
Q 034553            1 MVLDCDCHNVKALYRRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQKSLKQLQAESNKRDAKFYANMFARVTKD   78 (91)
Q Consensus         1 ~al~~~p~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~mf~~~~~~   78 (91)
                      +||+++|+++.+|+.+|.+++.+|++++|+.++++++.++|++..+...+..+...++++.++.. .+.+.....+..
T Consensus        27 ~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~~~eA~~-~~~~al~l~P~~  103 (356)
T PLN03088         27 QAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEYQTAKA-ALEKGASLAPGD  103 (356)
T ss_pred             HHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCCHHHHHH-HHHHHHHhCCCC
Confidence            36889999999999999999999999999999999999999999999999999888888877644 456655554443

>PF13428 TPR_14: Tetratricopeptide repeat

Probab=98.82  E-value=1.8e-08  Score=50.51  Aligned_cols=43  Identities=21%  Similarity=0.188  Sum_probs=39.5

Q ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHH
Q 034553           10 VKALYRRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQKS   52 (91)
Q Consensus        10 ~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~~~~~l~~   52 (91)
                      +.+++.+|.++..+|++++|+..|+++++.+|+|.+++..+..
T Consensus         1 p~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~   43 (44)
T PF13428_consen    1 PAAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ   43 (44)
T ss_pred             CHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence            3578999999999999999999999999999999999887764

>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional

Probab=98.81  E-value=3.3e-08  Score=64.13  Aligned_cols=84  Identities=11%  Similarity=0.077  Sum_probs=64.5

Q ss_pred             cccccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH-HHHHHH--HHHHHHHHHHhhhcccCC
Q 034553            2 VLDCDCHNVKALYRRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQKSLK-QLQAES--NKRDAKFYANMFARVTKD   78 (91)
Q Consensus         2 al~~~p~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~~~~~l~~~~-~~~~~~--~~~~~~~~~~mf~~~~~~   78 (91)
                      +|+.+|+++.+|+.+|.++..+|++++|+..|+++++++|++.++...+..+. ...+..  .+. ...+.+.....+..
T Consensus        65 ~L~~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A-~~~l~~al~~dP~~  143 (198)
T PRK10370         65 KIRANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQT-REMIDKALALDANE  143 (198)
T ss_pred             HHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHH-HHHHHHHHHhCCCC
Confidence            57889999999999999999999999999999999999999999998888764 343332  232 34566666666655


Q ss_pred             chhhhhhh
Q 034553           79 SSVATKVG   86 (91)
Q Consensus        79 ~~~~~~~g   86 (91)
                      ......+|
T Consensus       144 ~~al~~LA  151 (198)
T PRK10370        144 VTALMLLA  151 (198)
T ss_pred             hhHHHHHH
Confidence            55544443

>PRK11189 lipoprotein NlpI; Provisional

Probab=98.75  E-value=6e-08  Score=66.15  Aligned_cols=72  Identities=10%  Similarity=-0.026  Sum_probs=52.5

Q ss_pred             cccccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 034553            2 VLDCDCHNVKALYRRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQKSLKQLQAESNKRDAKFYANMFAR   74 (91)
Q Consensus         2 al~~~p~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~mf~~   74 (91)
                      +|+++|+++.+|+.+|.++..+|++++|+..|+++++++|++..+...+..+....++..++.. .+.+....
T Consensus        90 Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~-~~~~al~~  161 (296)
T PRK11189         90 ALALRPDMADAYNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQD-DLLAFYQD  161 (296)
T ss_pred             HHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHH-HHHHHHHh
Confidence            5677888888888888888888888888888888888888888777777776666666555532 34444433

>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.74  E-value=4e-08  Score=71.05  Aligned_cols=80  Identities=20%  Similarity=0.150  Sum_probs=60.7

Q ss_pred             CcccccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCch
Q 034553            1 MVLDCDCHNVKALYRRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQKSLKQLQAESNKRDAKFYANMFARVTKDSS   80 (91)
Q Consensus         1 ~al~~~p~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~mf~~~~~~~~   80 (91)
                      +|.++||.|+..||.||+.++-+++|++|+.||+++..|+|++.-...++.-+.-+.....+.++ .|...-.+++.-.+
T Consensus       385 ~A~~ldp~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~pe~~~~~iQl~~a~Yr~~k~~~~m~-~Fee~kkkFP~~~E  463 (606)
T KOG0547|consen  385 KAEDLDPENPDVYYHRGQMRFLLQQYEEAIADFQKAISLDPENAYAYIQLCCALYRQHKIAESMK-TFEEAKKKFPNCPE  463 (606)
T ss_pred             HHHhcCCCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhcChhhhHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhCCCCch
Confidence            36789999999999999999999999999999999999999997666665555555554444332 35555555555544


Q ss_pred             h
Q 034553           81 V   81 (91)
Q Consensus        81 ~   81 (91)
                      +
T Consensus       464 v  464 (606)
T KOG0547|consen  464 V  464 (606)
T ss_pred             H
Confidence            4

>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]

Probab=98.74  E-value=2.1e-08  Score=72.61  Aligned_cols=56  Identities=21%  Similarity=0.199  Sum_probs=50.7

Q ss_pred             cccccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
Q 034553            2 VLDCDCHNVKALYRRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQKSLKQLQ   57 (91)
Q Consensus         2 al~~~p~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~   57 (91)
                      +|++||++++||+|.|.++..+.+|+.|++.|++++++||++.++...+.++...+
T Consensus       418 ~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~eale~dp~~~e~~~~~~rc~~a~  473 (539)
T KOG0548|consen  418 CIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEALELDPSNAEAIDGYRRCVEAQ  473 (539)
T ss_pred             HHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHh
Confidence            67889999999999999999999999999999999999999999999988888765

>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A

Probab=98.73  E-value=1.3e-08  Score=54.77  Aligned_cols=51  Identities=25%  Similarity=0.265  Sum_probs=41.0

Q ss_pred             cccccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHH
Q 034553            2 VLDCDCHNVKALYRRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQKS   52 (91)
Q Consensus         2 al~~~p~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~~~~~l~~   52 (91)
                      +++.+|++..+++..|.+++..|++++|...+++++..+|+++.+...+..
T Consensus        17 ~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~a~   67 (68)
T PF14559_consen   17 ALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLLAQ   67 (68)
T ss_dssp             HHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHHHH
T ss_pred             HHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHHhc
Confidence            467788888888888888888888888888888888888887777666554

...

>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

Probab=98.70  E-value=7.8e-08  Score=71.01  Aligned_cols=85  Identities=15%  Similarity=0.139  Sum_probs=57.7

Q ss_pred             cccccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCchh
Q 034553            2 VLDCDCHNVKALYRRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQKSLKQLQAESNKRDAKFYANMFARVTKDSSV   81 (91)
Q Consensus         2 al~~~p~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~mf~~~~~~~~~   81 (91)
                      +|+++|+++.+|+.+|.+++.+|++++|+.+|+++++++|++..+...+..+....+...++. ..+++.....+....+
T Consensus       391 al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~-~~~~~al~~~P~~~~~  469 (615)
T TIGR00990       391 ALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGSIASSM-ATFRRCKKNFPEAPDV  469 (615)
T ss_pred             HHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccCHHHHHHHHHHHHHCCCHHHHH-HHHHHHHHhCCCChHH
Confidence            466777778888888888888888888888888888888877777777777766666666553 3455555554544445


Q ss_pred             hhhhhh
Q 034553           82 ATKVGY   87 (91)
Q Consensus        82 ~~~~g~   87 (91)
                      .+.+|.
T Consensus       470 ~~~lg~  475 (615)
T TIGR00990       470 YNYYGE  475 (615)
T ss_pred             HHHHHH
Confidence            555543

>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD

Probab=98.70  E-value=3.8e-07  Score=54.77  Aligned_cols=72  Identities=19%  Similarity=0.055  Sum_probs=51.3

Q ss_pred             cccccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 034553            2 VLDCDCHNVKALYRRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQKSLKQLQAESNKRDAKFYANMFAR   74 (91)
Q Consensus         2 al~~~p~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~mf~~   74 (91)
                      ++.++|++..+.+.+|.+++..|++++|+..+++++.++|.+..+...+..+....++..++.. .+......
T Consensus         9 ~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~-~~~~~~~~   80 (135)
T TIGR02552         9 LLGLDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAID-AYALAAAL   80 (135)
T ss_pred             HHcCChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhc
Confidence            5677777777788888888888888888888888888888777777777777777766665533 33443333

ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.

>PF13431 TPR_17: Tetratricopeptide repeat

Probab=98.68  E-value=1.1e-08  Score=48.86  Aligned_cols=31  Identities=19%  Similarity=0.216  Sum_probs=28.9

Q ss_pred             CcccccCCCHHHHHHHHHHHHHhCCHHHHHH
Q 034553            1 MVLDCDCHNVKALYRRAQVYMEIADLILAEL   31 (91)
Q Consensus         1 ~al~~~p~~~ka~~rrg~a~~~lg~~~~A~~   31 (91)
                      +||+++|+|+.+|+.+|.++...|++++|++
T Consensus         4 kAie~~P~n~~a~~nla~~~~~~g~~~~A~~   34 (34)
T PF13431_consen    4 KAIELNPNNAEAYNNLANLYLNQGDYEEAIA   34 (34)
T ss_pred             HHHHHCCCCHHHHHHHHHHHHHCcCHHhhcC
Confidence            4799999999999999999999999999963

>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=98.65  E-value=5.1e-08  Score=69.25  Aligned_cols=63  Identities=24%  Similarity=0.303  Sum_probs=57.2

Q ss_pred             CcccccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
Q 034553            1 MVLDCDCHNVKALYRRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQKSLKQLQAESNKRD   64 (91)
Q Consensus         1 ~al~~~p~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~   64 (91)
                      +|+.+||..+|||.+||.+++.+++|++|++||+++.+++.+ .+++..+.+++..++..++++
T Consensus       312 ~Al~iD~syikall~ra~c~l~le~~e~AV~d~~~a~q~~~s-~e~r~~l~~A~~aLkkSkRkd  374 (486)
T KOG0550|consen  312 EALKIDSSYIKALLRRANCHLALEKWEEAVEDYEKAMQLEKD-CEIRRTLREAQLALKKSKRKD  374 (486)
T ss_pred             hhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc-cchHHHHHHHHHHHHHhhhhh
Confidence            478999999999999999999999999999999999999877 889999999999888877643

>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]

Probab=98.64  E-value=3.6e-08  Score=70.72  Aligned_cols=62  Identities=19%  Similarity=0.281  Sum_probs=58.6

Q ss_pred             CcccccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH
Q 034553            1 MVLDCDCHNVKALYRRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQKSLKQLQAESNK   62 (91)
Q Consensus         1 ~al~~~p~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~   62 (91)
                      +||+++|...|+|+|||.+.+.++.+.+|+.+|+....+.|+++.+...+.+++..+.++.-
T Consensus        63 kaie~dP~~~K~Y~rrg~a~m~l~~~~~A~~~l~~~~~l~Pnd~~~~r~~~Ec~~~vs~~~f  124 (476)
T KOG0376|consen   63 KAIELDPTYIKAYVRRGTAVMALGEFKKALLDLEKVKKLAPNDPDATRKIDECNKIVSEEKF  124 (476)
T ss_pred             hhhhcCchhhheeeeccHHHHhHHHHHHHHHHHHHhhhcCcCcHHHHHHHHHHHHHHHHHhh
Confidence            47899999999999999999999999999999999999999999999999999999988644

>PLN02789 farnesyltranstransferase

Probab=98.62  E-value=1.6e-07  Score=65.02  Aligned_cols=88  Identities=13%  Similarity=0.098  Sum_probs=73.1

Q ss_pred             cccccCCCHHHHHHHHHHHHHhC-CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH-HHHHHHHHHHhhhcccCCc
Q 034553            2 VLDCDCHNVKALYRRAQVYMEIA-DLILAELDIKKAIEADPQNREVKLLQKSLKQLQAES-NKRDAKFYANMFARVTKDS   79 (91)
Q Consensus         2 al~~~p~~~ka~~rrg~a~~~lg-~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~-~~~~~~~~~~mf~~~~~~~   79 (91)
                      +|+++|++..+|..||.++..+| ++++|+..++++++.+|++..++...+.+-..++.. ..++...+.++++..+..+
T Consensus        63 aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~~~~el~~~~kal~~dpkNy  142 (320)
T PLN02789         63 VIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDAANKELEFTRKILSLDAKNY  142 (320)
T ss_pred             HHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchhhHHHHHHHHHHHHhCcccH
Confidence            68899999999999999999999 689999999999999999999888877776666542 2345667889998888888


Q ss_pred             hhhhhhhhcc
Q 034553           80 SVATKVGYFA   89 (91)
Q Consensus        80 ~~~~~~g~f~   89 (91)
                      ++-++.||.+
T Consensus       143 ~AW~~R~w~l  152 (320)
T PLN02789        143 HAWSHRQWVL  152 (320)
T ss_pred             HHHHHHHHHH
Confidence            8888777654

>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD

Probab=98.61  E-value=2.6e-07  Score=55.52  Aligned_cols=75  Identities=11%  Similarity=-0.063  Sum_probs=63.3

Q ss_pred             cccccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccC
Q 034553            2 VLDCDCHNVKALYRRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQKSLKQLQAESNKRDAKFYANMFARVTK   77 (91)
Q Consensus         2 al~~~p~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~mf~~~~~   77 (91)
                      ++.++|.++.+++++|.+++.+|++++|+..++++++++|.+......+..+....++..++.. .+.......+.
T Consensus        43 ~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~-~~~~al~~~p~  117 (135)
T TIGR02552        43 LAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFHAAECLLALGEPESALK-ALDLAIEICGE  117 (135)
T ss_pred             HHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCCHHHHHH-HHHHHHHhccc
Confidence            4677999999999999999999999999999999999999999999999988888887776643 55666655443

ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.

>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=98.58  E-value=1.9e-07  Score=61.99  Aligned_cols=86  Identities=20%  Similarity=0.215  Sum_probs=68.9

Q ss_pred             CcccccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc--ccCC
Q 034553            1 MVLDCDCHNVKALYRRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQKSLKQLQAESNKRDAKFYANMFAR--VTKD   78 (91)
Q Consensus         1 ~al~~~p~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~mf~~--~~~~   78 (91)
                      +||++||++..+|.-+|.+|..+|+.+.|-+.|++|+.++|++.++.+...-.-=..++..++... +.+....  .+..
T Consensus        60 kAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC~qg~~~eA~q~-F~~Al~~P~Y~~~  138 (250)
T COG3063          60 KALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFLCAQGRPEEAMQQ-FERALADPAYGEP  138 (250)
T ss_pred             HHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHHHhCCChHHHHHH-HHHHHhCCCCCCc
Confidence            478999999999999999999999999999999999999999999999998877777777776443 3433322  2344


Q ss_pred             chhhhhhhh
Q 034553           79 SSVATKVGY   87 (91)
Q Consensus        79 ~~~~~~~g~   87 (91)
                      +++..|.|+
T Consensus       139 s~t~eN~G~  147 (250)
T COG3063         139 SDTLENLGL  147 (250)
T ss_pred             chhhhhhHH
Confidence            556666664

>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]

Probab=98.58  E-value=1.1e-07  Score=66.73  Aligned_cols=76  Identities=20%  Similarity=0.344  Sum_probs=65.1

Q ss_pred             cccccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCC
Q 034553            2 VLDCDCHNVKALYRRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQKSLKQLQAESNKRDAKFYANMFARVTKD   78 (91)
Q Consensus         2 al~~~p~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~mf~~~~~~   78 (91)
                      |++.||++..|+||||.+|+.+|+-..|+.|+.++|++.|+...++.+...+.-+.++..+++. -|+.++...++.
T Consensus        64 Ave~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQRg~vllK~Gele~A~~-DF~~vl~~~~s~  139 (504)
T KOG0624|consen   64 AVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARIQRGVVLLKQGELEQAEA-DFDQVLQHEPSN  139 (504)
T ss_pred             HHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHHHhchhhhhcccHHHHHH-HHHHHHhcCCCc
Confidence            6889999999999999999999999999999999999999999999888888888888887755 356666655443

>PRK12370 invasion protein regulator; Provisional

Probab=98.57  E-value=4.1e-07  Score=66.75  Aligned_cols=62  Identities=16%  Similarity=0.103  Sum_probs=39.7

Q ss_pred             cccccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
Q 034553            2 VLDCDCHNVKALYRRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQKSLKQLQAESNKR   63 (91)
Q Consensus         2 al~~~p~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~   63 (91)
                      |++++|+++.+|..+|.++...|++++|+..|+++++++|++..+...+..+....++..++
T Consensus       330 Al~ldP~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eA  391 (553)
T PRK12370        330 ATELDHNNPQALGLLGLINTIHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEA  391 (553)
T ss_pred             HHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHH
Confidence            45666666666666666666666666666666666666666666666666555555555444

>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]

Probab=98.57  E-value=1.5e-07  Score=66.05  Aligned_cols=61  Identities=31%  Similarity=0.320  Sum_probs=57.1

Q ss_pred             cccccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH
Q 034553            2 VLDCDCHNVKALYRRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQKSLKQLQAESNK   62 (91)
Q Consensus         2 al~~~p~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~   62 (91)
                      +|+++|+++.++..||.||+.-..|++|+.+|++|++++|+|..++..+.++++..++..+
T Consensus       333 vL~~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n~sn~~~reGle~Akrlkkqs~k  393 (504)
T KOG0624|consen  333 VLDIDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELNESNTRAREGLERAKRLKKQSGK  393 (504)
T ss_pred             HHhcCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHhcc
Confidence            6889999999999999999999999999999999999999999999999999888777644

>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional

Probab=98.56  E-value=4e-07  Score=57.32  Aligned_cols=72  Identities=6%  Similarity=-0.122  Sum_probs=59.5

Q ss_pred             ccccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 034553            3 LDCDCHNVKALYRRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQKSLKQLQAESNKRDAKFYANMFARV   75 (91)
Q Consensus         3 l~~~p~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~mf~~~   75 (91)
                      ..+||.+...|+.+|.++-.+|+|++|+..|.+++.++|+++.....+..+.-.+++...+.+ .++......
T Consensus        62 ~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~L~lG~~~~A~~-aF~~Ai~~~  133 (157)
T PRK15363         62 TIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAECYLACDNVCYAIK-ALKAVVRIC  133 (157)
T ss_pred             HHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHcCCHHHHHH-HHHHHHHHh
Confidence            467999999999999999999999999999999999999999888888888888877776633 455554443

>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B

Probab=98.54  E-value=4e-07  Score=48.59  Aligned_cols=43  Identities=26%  Similarity=0.260  Sum_probs=39.3

Q ss_pred             cccccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCH
Q 034553            2 VLDCDCHNVKALYRRAQVYMEIADLILAELDIKKAIEADPQNR   44 (91)
Q Consensus         2 al~~~p~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~   44 (91)
                      +++.+|+++.+++.+|.++..+|++++|+..|+++++++|+|+
T Consensus        23 ~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p   65 (65)
T PF13432_consen   23 ALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP   65 (65)
T ss_dssp             HHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred             HHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence            5788999999999999999999999999999999999999975

>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A

Probab=98.53  E-value=2.7e-07  Score=43.29  Aligned_cols=33  Identities=30%  Similarity=0.467  Sum_probs=30.8

Q ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCC
Q 034553           11 KALYRRAQVYMEIADLILAELDIKKAIEADPQN   43 (91)
Q Consensus        11 ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~   43 (91)
                      ++|+.+|.++..+|++++|+..|+++++++|+|
T Consensus         2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~n   34 (34)
T PF13181_consen    2 EAYYNLGKIYEQLGDYEEALEYFEKALELNPDN   34 (34)
T ss_dssp             HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT-
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence            689999999999999999999999999999964

...

>PLN02789 farnesyltranstransferase

Probab=98.52  E-value=6.3e-07  Score=62.13  Aligned_cols=86  Identities=13%  Similarity=0.040  Sum_probs=62.1

Q ss_pred             cccccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH---H---HHHHHHHHHHHHhhhcc
Q 034553            2 VLDCDCHNVKALYRRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQKSLKQLQ---A---ESNKRDAKFYANMFARV   75 (91)
Q Consensus         2 al~~~p~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~---~---~~~~~~~~~~~~mf~~~   75 (91)
                      +|++||.|..||..||.++..+|+|++|++.+.++++++|+|..++..+..+-..+   .   ...+++.....++....
T Consensus       134 al~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~~  213 (320)
T PLN02789        134 ILSLDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNSAWNQRYFVITRSPLLGGLEAMRDSELKYTIDAILAN  213 (320)
T ss_pred             HHHhCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchhHHHHHHHHHHhccccccccccHHHHHHHHHHHHHhC
Confidence            67889999999999999999999999999999999999999998888887765443   1   11233444555555555


Q ss_pred             cCCchhhhhhhh
Q 034553           76 TKDSSVATKVGY   87 (91)
Q Consensus        76 ~~~~~~~~~~g~   87 (91)
                      +...+.-+.+|.
T Consensus       214 P~N~SaW~Yl~~  225 (320)
T PLN02789        214 PRNESPWRYLRG  225 (320)
T ss_pred             CCCcCHHHHHHH
Confidence            554444444443

>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional

Probab=98.51  E-value=5.9e-07  Score=69.93  Aligned_cols=85  Identities=7%  Similarity=0.048  Sum_probs=55.1

Q ss_pred             cccccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCchh
Q 034553            2 VLDCDCHNVKALYRRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQKSLKQLQAESNKRDAKFYANMFARVTKDSSV   81 (91)
Q Consensus         2 al~~~p~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~mf~~~~~~~~~   81 (91)
                      +++++|+++.+++..|.++..+|++++|+..|+++++++|++..+...+..+....++..++.. .+++.+...+....+
T Consensus       635 AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~-~l~~Al~l~P~~a~i  713 (987)
T PRK09782        635 ALELEPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQH-YARLVIDDIDNQALI  713 (987)
T ss_pred             HHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHH-HHHHHHhcCCCCchh
Confidence            4566677777777777777777777777777777777777766666666666666666666543 456666665555555


Q ss_pred             hhhhhh
Q 034553           82 ATKVGY   87 (91)
Q Consensus        82 ~~~~g~   87 (91)
                      ...+|+
T Consensus       714 ~~~~g~  719 (987)
T PRK09782        714 TPLTPE  719 (987)
T ss_pred             hhhhhH
Confidence            555554

>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional

Probab=98.50  E-value=9.7e-07  Score=63.43  Aligned_cols=69  Identities=12%  Similarity=0.121  Sum_probs=56.4

Q ss_pred             cccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHH---HHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 034553            4 DCDCHNVKALYRRAQVYMEIADLILAELDIKKAIEADPQNREV---KLLQKSLKQLQAESNKRDAKFYANMFA   73 (91)
Q Consensus         4 ~~~p~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~~---~~~l~~~~~~~~~~~~~~~~~~~~mf~   73 (91)
                      .-+|+++.+|+.+|.+++.+|+|++|+..|+++++++|++.++   ...+.-+...+++..++.. .+++...
T Consensus        69 ~~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla-~LrrALe  140 (453)
T PLN03098         69 EADVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAAD-CLRTALR  140 (453)
T ss_pred             cCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHH-HHHHHHH
Confidence            3589999999999999999999999999999999999999865   7777777777777666533 3344333

>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]

Probab=98.48  E-value=5e-07  Score=61.67  Aligned_cols=56  Identities=20%  Similarity=0.130  Sum_probs=51.8

Q ss_pred             ccccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
Q 034553            3 LDCDCHNVKALYRRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQKSLKQLQA   58 (91)
Q Consensus         3 l~~~p~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~   58 (91)
                      |..||++++.|..+|.+|+.+|+++.|...|.+|++|.|+|.++...+.++-....
T Consensus       149 L~~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a  204 (287)
T COG4235         149 LQQNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQA  204 (287)
T ss_pred             HHhCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhc
Confidence            57899999999999999999999999999999999999999999998888766554

>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

Probab=98.46  E-value=1.2e-06  Score=64.79  Aligned_cols=76  Identities=17%  Similarity=0.221  Sum_probs=61.8

Q ss_pred             cccccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCC
Q 034553            2 VLDCDCHNVKALYRRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQKSLKQLQAESNKRDAKFYANMFARVTKD   78 (91)
Q Consensus         2 al~~~p~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~mf~~~~~~   78 (91)
                      +|+++|++..+|+.+|.++..+|++++|+..|+++++++|++..+...+..+....++..++.. .+.+.....+..
T Consensus       357 al~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~-~~~kal~l~P~~  432 (615)
T TIGR00990       357 SIELDPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGK-DYQKSIDLDPDF  432 (615)
T ss_pred             HHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHH-HHHHHHHcCccC
Confidence            5778899999999999999999999999999999999999999888888888888877777643 466666554443

>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=98.45  E-value=1.1e-06  Score=65.52  Aligned_cols=86  Identities=10%  Similarity=0.045  Sum_probs=73.5

Q ss_pred             CcccccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCch
Q 034553            1 MVLDCDCHNVKALYRRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQKSLKQLQAESNKRDAKFYANMFARVTKDSS   80 (91)
Q Consensus         1 ~al~~~p~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~mf~~~~~~~~   80 (91)
                      +||+++|+++.||...|.|+-.+|+..+|+..|+++|.+.|+.+++...|..+........++.+ .|.+.|.-+++-..
T Consensus       311 ral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~hadam~NLgni~~E~~~~e~A~~-ly~~al~v~p~~aa  389 (966)
T KOG4626|consen  311 RALELQPNFPDAYNNLANALKDKGSVTEAVDCYNKALRLCPNHADAMNNLGNIYREQGKIEEATR-LYLKALEVFPEFAA  389 (966)
T ss_pred             HHHhcCCCchHHHhHHHHHHHhccchHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhccchHHHH-HHHHHHhhChhhhh
Confidence            47889999999999999999999999999999999999999999999999999888877777643 67777777777777


Q ss_pred             hhhhhhh
Q 034553           81 VATKVGY   87 (91)
Q Consensus        81 ~~~~~g~   87 (91)
                      ..||+|-
T Consensus       390 a~nNLa~  396 (966)
T KOG4626|consen  390 AHNNLAS  396 (966)
T ss_pred             hhhhHHH
Confidence            7777664

>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional

Probab=98.43  E-value=1.5e-06  Score=56.37  Aligned_cols=76  Identities=16%  Similarity=0.113  Sum_probs=60.9

Q ss_pred             cccccCCCHHHHHHHHHHH-HHhCC--HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCC
Q 034553            2 VLDCDCHNVKALYRRAQVY-MEIAD--LILAELDIKKAIEADPQNREVKLLQKSLKQLQAESNKRDAKFYANMFARVTKD   78 (91)
Q Consensus         2 al~~~p~~~ka~~rrg~a~-~~lg~--~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~mf~~~~~~   78 (91)
                      +++++|+++..++..|.++ ...|+  +++|...++++++++|++..+...+..+....+++.++. ..++++....+..
T Consensus        99 Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai-~~~~~aL~l~~~~  177 (198)
T PRK10370         99 ALQLRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAI-ELWQKVLDLNSPR  177 (198)
T ss_pred             HHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHH-HHHHHHHhhCCCC
Confidence            6778888888888888875 56676  588888899999999888888888888888888888774 4677777766553

>PRK11189 lipoprotein NlpI; Provisional

Probab=98.43  E-value=2e-06  Score=58.68  Aligned_cols=82  Identities=11%  Similarity=0.067  Sum_probs=68.8

Q ss_pred             ccCC-CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCchhhh
Q 034553            5 CDCH-NVKALYRRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQKSLKQLQAESNKRDAKFYANMFARVTKDSSVAT   83 (91)
Q Consensus         5 ~~p~-~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~mf~~~~~~~~~~~   83 (91)
                      ++|. .+..|+.+|.++..+|++++|+.+|+++++++|++..+...+..+....++..++.. .+.+.....+.......
T Consensus        58 ~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~-~~~~Al~l~P~~~~a~~  136 (296)
T PRK11189         58 LTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYE-AFDSVLELDPTYNYAYL  136 (296)
T ss_pred             CCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHH-HHHHHHHhCCCCHHHHH
Confidence            4444 488999999999999999999999999999999999999999999999999888754 57777777666555655


Q ss_pred             hhhh
Q 034553           84 KVGY   87 (91)
Q Consensus        84 ~~g~   87 (91)
                      +.|.
T Consensus       137 ~lg~  140 (296)
T PRK11189        137 NRGI  140 (296)
T ss_pred             HHHH
Confidence            5554

>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]

Probab=98.41  E-value=3.8e-07  Score=64.15  Aligned_cols=56  Identities=25%  Similarity=0.297  Sum_probs=50.8

Q ss_pred             cccccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
Q 034553            2 VLDCDCHNVKALYRRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQKSLKQLQ   57 (91)
Q Consensus         2 al~~~p~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~   57 (91)
                      ||.+|-.++|||.|||.|...||...+|.+|++.+|+|+|++.+++..+..+....
T Consensus       157 AiaLd~~Y~KAYSRR~~AR~~Lg~~~EAKkD~E~vL~LEP~~~ELkK~~a~i~Sl~  212 (536)
T KOG4648|consen  157 AIALDKLYVKAYSRRMQARESLGNNMEAKKDCETVLALEPKNIELKKSLARINSLR  212 (536)
T ss_pred             HHHhhHHHHHHHHHHHHHHHHHhhHHHHHHhHHHHHhhCcccHHHHHHHHHhcchH
Confidence            57788899999999999999999999999999999999999988888887776633

>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]

Probab=98.41  E-value=6.2e-07  Score=66.33  Aligned_cols=75  Identities=21%  Similarity=0.304  Sum_probs=66.1

Q ss_pred             CcccccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccc
Q 034553            1 MVLDCDCHNVKALYRRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQKSLKQLQAESNKRDAKFYANMFARVT   76 (91)
Q Consensus         1 ~al~~~p~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~mf~~~~   76 (91)
                      .||..||.+-.|||..|.+|+++++++.|.-.|++|++++|.|..+.--+..+..+++..+++- ..+.+.+-..+
T Consensus       480 ~Al~~~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL-~~~~~A~~ld~  554 (638)
T KOG1126|consen  480 KALGVDPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKAL-QLYEKAIHLDP  554 (638)
T ss_pred             hhhcCCchhhHHHHhhhhheeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHH-HHHHHHHhcCC
Confidence            3789999999999999999999999999999999999999999999999999999999888763 35666655543

>PRK12370 invasion protein regulator; Provisional

Probab=98.40  E-value=1.5e-06  Score=63.81  Aligned_cols=87  Identities=15%  Similarity=0.158  Sum_probs=71.3

Q ss_pred             CcccccCCCHHHHHHHHHHHHHhC---------CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 034553            1 MVLDCDCHNVKALYRRAQVYMEIA---------DLILAELDIKKAIEADPQNREVKLLQKSLKQLQAESNKRDAKFYANM   71 (91)
Q Consensus         1 ~al~~~p~~~ka~~rrg~a~~~lg---------~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~m   71 (91)
                      +|+++||+++.+|..+|.++..++         ++++|+..++++++++|++..+...+..+....++..++. ..+.+.
T Consensus       286 ~Al~ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g~~~~A~-~~~~~A  364 (553)
T PRK12370        286 QCVNMSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHNNPQALGLLGLINTIHSEYIVGS-LLFKQA  364 (553)
T ss_pred             HHHhcCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHH-HHHHHH
Confidence            378999999999999999887554         3899999999999999999999999998888888777764 467777


Q ss_pred             hhcccCCchhhhhhhhc
Q 034553           72 FARVTKDSSVATKVGYF   88 (91)
Q Consensus        72 f~~~~~~~~~~~~~g~f   88 (91)
                      ....+........+|..
T Consensus       365 l~l~P~~~~a~~~lg~~  381 (553)
T PRK12370        365 NLLSPISADIKYYYGWN  381 (553)
T ss_pred             HHhCCCCHHHHHHHHHH
Confidence            77777666666666654

>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional

Probab=98.38  E-value=2.9e-06  Score=64.10  Aligned_cols=84  Identities=7%  Similarity=-0.033  Sum_probs=50.3

Q ss_pred             cccccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCchh
Q 034553            2 VLDCDCHNVKALYRRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQKSLKQLQAESNKRDAKFYANMFARVTKDSSV   81 (91)
Q Consensus         2 al~~~p~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~mf~~~~~~~~~   81 (91)
                      +++++|++..|+..++.++.+++.+++|+..+++++..+|++.++...+..+-..+++++++. ..|.+.....+...++
T Consensus       112 ~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~~~~~~~a~~l~~~g~~~~A~-~~y~~~~~~~p~~~~~  190 (694)
T PRK15179        112 IHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSSAREILLEAKSWDEIGQSEQAD-ACFERLSRQHPEFENG  190 (694)
T ss_pred             HHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhcchHHHH-HHHHHHHhcCCCcHHH
Confidence            455666666666666666666666666666666666666666666666666666666666653 3455555543333334


Q ss_pred             hhhhh
Q 034553           82 ATKVG   86 (91)
Q Consensus        82 ~~~~g   86 (91)
                      ...+|
T Consensus       191 ~~~~a  195 (694)
T PRK15179        191 YVGWA  195 (694)
T ss_pred             HHHHH
Confidence            33333

>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C

Probab=98.38  E-value=7.2e-06  Score=44.15  Aligned_cols=62  Identities=24%  Similarity=0.231  Sum_probs=47.0

Q ss_pred             cccccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
Q 034553            2 VLDCDCHNVKALYRRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQKSLKQLQAESNKR   63 (91)
Q Consensus         2 al~~~p~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~   63 (91)
                      +++..|.+..+++.+|.++...+++++|+..|++++.+.|.+..+...+..+....++....
T Consensus        26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a   87 (100)
T cd00189          26 ALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLGKYEEA   87 (100)
T ss_pred             HHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHHhHHHH
Confidence            45667777788888888888888888888888888888888777777776666666665444

>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional

Probab=98.35  E-value=2.5e-06  Score=66.48  Aligned_cols=86  Identities=15%  Similarity=0.218  Sum_probs=74.0

Q ss_pred             cccccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCchh
Q 034553            2 VLDCDCHNVKALYRRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQKSLKQLQAESNKRDAKFYANMFARVTKDSSV   81 (91)
Q Consensus         2 al~~~p~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~mf~~~~~~~~~   81 (91)
                      +++++|+ +.+++.+|.++..+|++++|+..|++++.++|++..+...+..+-...++..++. ..+.+.....+....+
T Consensus       602 AL~l~P~-~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi-~~l~~AL~l~P~~~~a  679 (987)
T PRK09782        602 SLNIAPS-ANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSR-EMLERAHKGLPDDPAL  679 (987)
T ss_pred             HHHhCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHH-HHHHHHHHhCCCCHHH
Confidence            6788996 9999999999999999999999999999999999999999998888887776663 4678888887877777


Q ss_pred             hhhhhhcc
Q 034553           82 ATKVGYFA   89 (91)
Q Consensus        82 ~~~~g~f~   89 (91)
                      ..++|+.+
T Consensus       680 ~~nLA~al  687 (987)
T PRK09782        680 IRQLAYVN  687 (987)
T ss_pred             HHHHHHHH
Confidence            87777643

>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional

Probab=98.35  E-value=2.9e-06  Score=64.11  Aligned_cols=76  Identities=7%  Similarity=0.025  Sum_probs=66.9

Q ss_pred             CcccccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccC
Q 034553            1 MVLDCDCHNVKALYRRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQKSLKQLQAESNKRDAKFYANMFARVTK   77 (91)
Q Consensus         1 ~al~~~p~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~mf~~~~~   77 (91)
                      ++++.+|++..+++.+|.++..+|+|++|+..|++++.-+|+++.++..+..+-+..++..++. ..|++.+...+.
T Consensus       145 ~~l~~~p~~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~-~~~~~a~~~~~~  220 (694)
T PRK15179        145 LYFSGGSSSAREILLEAKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRAR-DVLQAGLDAIGD  220 (694)
T ss_pred             HHhhcCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHH-HHHHHHHHhhCc
Confidence            3678999999999999999999999999999999999999999999999999999998888874 467777665543

>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]

Probab=98.34  E-value=4.1e-06  Score=56.33  Aligned_cols=81  Identities=14%  Similarity=0.110  Sum_probs=42.6

Q ss_pred             CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCchhhhhhh
Q 034553            7 CHNVKALYRRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQKSLKQLQAESNKRDAKFYANMFARVTKDSSVATKVG   86 (91)
Q Consensus         7 p~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~mf~~~~~~~~~~~~~g   86 (91)
                      |.....+.-.|+..+..|+|..|+..++++..++|+|.+++..+..+-..+++...++. .|.+.++..+....+.||.|
T Consensus        97 ~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~lgaaldq~Gr~~~Ar~-ay~qAl~L~~~~p~~~nNlg  175 (257)
T COG5010          97 PKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNLLGAALDQLGRFDEARR-AYRQALELAPNEPSIANNLG  175 (257)
T ss_pred             cccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCChhhhhHHHHHHHHccChhHHHH-HHHHHHHhccCCchhhhhHH
Confidence            33444444455555555555555555555555555555555555555555555555432 34555555555555555555


Q ss_pred             hc
Q 034553           87 YF   88 (91)
Q Consensus        87 ~f   88 (91)
                      ++
T Consensus       176 ms  177 (257)
T COG5010         176 MS  177 (257)
T ss_pred             HH
Confidence            43

>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]

Probab=98.29  E-value=2.6e-06  Score=57.23  Aligned_cols=65  Identities=9%  Similarity=0.016  Sum_probs=59.2

Q ss_pred             cccccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 034553            2 VLDCDCHNVKALYRRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQKSLKQLQAESNKRDAK   66 (91)
Q Consensus         2 al~~~p~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~~~   66 (91)
                      +..++|+++++|.-+|.+|.++|++++|...|.+++++.|+++.+.+.+.-.....++.+.++.-
T Consensus       126 A~~l~p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~l  190 (257)
T COG5010         126 AARLAPTDWEAWNLLGAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETL  190 (257)
T ss_pred             HhccCCCChhhhhHHHHHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHH
Confidence            57889999999999999999999999999999999999999999999998888887777776553

>PRK15174 Vi polysaccharide export protein VexE; Provisional

Probab=98.24  E-value=7.1e-06  Score=61.49  Aligned_cols=74  Identities=9%  Similarity=0.080  Sum_probs=57.5

Q ss_pred             cccccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccc
Q 034553            2 VLDCDCHNVKALYRRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQKSLKQLQAESNKRDAKFYANMFARVT   76 (91)
Q Consensus         2 al~~~p~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~mf~~~~   76 (91)
                      +++++|+++.++..+|.++..+|++++|+..++++++++|++..+...+..+....++..++.. .+.++....+
T Consensus       276 Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~~G~~~eA~~-~l~~al~~~P  349 (656)
T PRK15174        276 ALQFNSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYARALRQVGQYTAASD-EFVQLAREKG  349 (656)
T ss_pred             HHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHH-HHHHHHHhCc
Confidence            5678888888888888888888888888888888888888888888888887777777766533 4555555433

>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF

Probab=98.22  E-value=1.5e-05  Score=46.24  Aligned_cols=75  Identities=13%  Similarity=0.077  Sum_probs=55.1

Q ss_pred             ccccCCC---HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCC---HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccc
Q 034553            3 LDCDCHN---VKALYRRAQVYMEIADLILAELDIKKAIEADPQN---REVKLLQKSLKQLQAESNKRDAKFYANMFARVT   76 (91)
Q Consensus         3 l~~~p~~---~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~---~~~~~~l~~~~~~~~~~~~~~~~~~~~mf~~~~   76 (91)
                      ++.+|++   ..+++.+|.+++..|++++|+..|+.++..+|++   ..+...+..+....+...+.. ..+..+....+
T Consensus        29 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~-~~~~~~~~~~p  107 (119)
T TIGR02795        29 LKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGMSLQELGDKEKAK-ATLQQVIKRYP  107 (119)
T ss_pred             HHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHHHHHHhCChHHHH-HHHHHHHHHCc
Confidence            4556665   6789999999999999999999999999998885   456667777766666665553 35666666654


Q ss_pred             CC
Q 034553           77 KD   78 (91)
Q Consensus        77 ~~   78 (91)
                      ..
T Consensus       108 ~~  109 (119)
T TIGR02795       108 GS  109 (119)
T ss_pred             CC
Confidence            43

Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.

>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=98.20  E-value=9.8e-06  Score=58.63  Aligned_cols=72  Identities=15%  Similarity=0.148  Sum_probs=59.9

Q ss_pred             CcccccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 034553            1 MVLDCDCHNVKALYRRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQKSLKQLQAESNKRDAKFYANMFA   73 (91)
Q Consensus         1 ~al~~~p~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~mf~   73 (91)
                      +|++++|.+-+|||..|++|.-++-+.=|+-.|++|+++-|+|+-++..|+.|..++..-.++.+ -|++...
T Consensus       389 rAvdi~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiK-Cykrai~  460 (559)
T KOG1155|consen  389 RAVDINPRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIK-CYKRAIL  460 (559)
T ss_pred             HHHhcCchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHH-HHHHHHh
Confidence            37888999999999999999888888889999999999999999899999999888888777754 5565543

>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW

Probab=98.18  E-value=1.2e-05  Score=50.82  Aligned_cols=70  Identities=19%  Similarity=0.206  Sum_probs=54.5

Q ss_pred             cccccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 034553            2 VLDCDCHNVKALYRRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQKSLKQLQAESNKRDAKFYANMF   72 (91)
Q Consensus         2 al~~~p~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~mf   72 (91)
                      +++.+|++..+++.+|.++..+|++++|+..++++++++|.+..+...+..+....++..++.. .+.+..
T Consensus        57 ~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~A~~-~~~~~~  126 (234)
T TIGR02521        57 ALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFLCQQGKYEQAMQ-QFEQAI  126 (234)
T ss_pred             HHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcccHHHHHH-HHHHHH
Confidence            4567889999999999999999999999999999999999888877777777666666655432 344443

Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.

>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B

Probab=98.17  E-value=8.8e-06  Score=54.66  Aligned_cols=79  Identities=15%  Similarity=0.182  Sum_probs=52.4

Q ss_pred             CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCchhhhhhh
Q 034553            7 CHNVKALYRRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQKSLKQLQAESNKRDAKFYANMFARVTKDSSVATKVG   86 (91)
Q Consensus         7 p~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~mf~~~~~~~~~~~~~g   86 (91)
                      |.++..|+.+|.++...|++++|+..|+++++++|+|..+...+.-+....++..+. +...+..-...+........+|
T Consensus       143 ~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~P~~~~~~~~l~~~li~~~~~~~~-~~~l~~~~~~~~~~~~~~~~la  221 (280)
T PF13429_consen  143 PDSARFWLALAEIYEQLGDPDKALRDYRKALELDPDDPDARNALAWLLIDMGDYDEA-REALKRLLKAAPDDPDLWDALA  221 (280)
T ss_dssp             -T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHCTTCHHHHH-HHHHHHHHHH-HTSCCHCHHHH
T ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCChHHH-HHHHHHHHHHCcCHHHHHHHHH
Confidence            578889999999999999999999999999999999999888776655544444432 2233333333334444444444

>smart00028 TPR Tetratricopeptide repeats

Probab=98.17  E-value=4.8e-06  Score=36.90  Aligned_cols=33  Identities=36%  Similarity=0.507  Sum_probs=30.8

Q ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCC
Q 034553           11 KALYRRAQVYMEIADLILAELDIKKAIEADPQN   43 (91)
Q Consensus        11 ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~   43 (91)
                      .+|+++|.+++.+++++.|+..++++++++|++
T Consensus         2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~~   34 (34)
T smart00028        2 EALYNLGNAYLKLGDYDEALEYYEKALELDPNN   34 (34)
T ss_pred             hHHHHHHHHHHHHhhHHHHHHHHHHHHccCCCC
Confidence            578999999999999999999999999999864

Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.

>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A

Probab=98.17  E-value=6.9e-06  Score=37.86  Aligned_cols=33  Identities=30%  Similarity=0.411  Sum_probs=31.1

Q ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCC
Q 034553           11 KALYRRAQVYMEIADLILAELDIKKAIEADPQN   43 (91)
Q Consensus        11 ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~   43 (91)
                      .|+|+.|.++..+|++++|+..|+++++..|++
T Consensus         1 ~a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~s   33 (33)
T PF13174_consen    1 DALYRLARCYYKLGDYDEAIEYFQRLIKRYPDS   33 (33)
T ss_dssp             HHHHHHHHHHHHHCHHHHHHHHHHHHHHHSTTS
T ss_pred             CHHHHHHHHHHHccCHHHHHHHHHHHHHHCcCC
Confidence            489999999999999999999999999999974

>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein

Probab=98.16  E-value=1.1e-05  Score=59.81  Aligned_cols=85  Identities=12%  Similarity=0.105  Sum_probs=60.4

Q ss_pred             cccccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCchh
Q 034553            2 VLDCDCHNVKALYRRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQKSLKQLQAESNKRDAKFYANMFARVTKDSSV   81 (91)
Q Consensus         2 al~~~p~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~mf~~~~~~~~~   81 (91)
                      +++.+|+++.+++..|.++..+|++++|+..|+++++.+|++..+...+..+....+. .+ -...+.+++...+.....
T Consensus       762 ~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~-~~-A~~~~~~~~~~~~~~~~~  839 (899)
T TIGR02917       762 WLKTHPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYLELKD-PR-ALEYAEKALKLAPNIPAI  839 (899)
T ss_pred             HHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCc-HH-HHHHHHHHHhhCCCCcHH
Confidence            3566888888888888888888888888888888888888888877777766666555 22 234556666555555445


Q ss_pred             hhhhhhc
Q 034553           82 ATKVGYF   88 (91)
Q Consensus        82 ~~~~g~f   88 (91)
                      ...+|..
T Consensus       840 ~~~~~~~  846 (899)
T TIGR02917       840 LDTLGWL  846 (899)
T ss_pred             HHHHHHH
Confidence            5555443

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.

>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins

Probab=98.14  E-value=1.4e-05  Score=51.47  Aligned_cols=64  Identities=17%  Similarity=0.150  Sum_probs=52.0

Q ss_pred             cccccCCCHHHHHHHHHHHHHhCC-----------HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 034553            2 VLDCDCHNVKALYRRAQVYMEIAD-----------LILAELDIKKAIEADPQNREVKLLQKSLKQLQAESNKRDA   65 (91)
Q Consensus         2 al~~~p~~~ka~~rrg~a~~~lg~-----------~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~~   65 (91)
                      ||.++|+...|++..|.|+..++.           |+.|...|++|..++|+|...+..|....+.-.-..+-++
T Consensus        61 AL~I~P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~~~P~ne~Y~ksLe~~~kap~lh~e~~~  135 (186)
T PF06552_consen   61 ALKINPNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVDEDPNNELYRKSLEMAAKAPELHMEIHK  135 (186)
T ss_dssp             HHHH-TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHTHHHHHHHHHH
T ss_pred             HHhcCCchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHhhHHHHHHHHH
Confidence            789999999999999999988875           8999999999999999999999999888776666555444

Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.

>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.14  E-value=1e-05  Score=58.96  Aligned_cols=62  Identities=23%  Similarity=0.210  Sum_probs=48.2

Q ss_pred             CcccccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHH
Q 034553            1 MVLDCDCHNVKALYRRAQVYMEIADLILAELDIKKAIEAD-PQNREVKLLQKSLKQLQAESNK   62 (91)
Q Consensus         1 ~al~~~p~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~-p~~~~~~~~l~~~~~~~~~~~~   62 (91)
                      +||+++|+++||++||+.|+..+|++.+|+.|..-..-++ -+|..+.-.+.++-++.....-
T Consensus       174 kALEl~P~Y~KAl~RRA~A~E~lg~~~eal~D~tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka  236 (606)
T KOG0547|consen  174 KALELNPDYVKALLRRASAHEQLGKFDEALFDVTVLCILEGFQNASIEPMAERVLKKQAMKKA  236 (606)
T ss_pred             HHhhcCcHHHHHHHHHHHHHHhhccHHHHHHhhhHHHHhhhcccchhHHHHHHHHHHHHHHHH
Confidence            4789999999999999999999999999999988755554 3466666666666665555443

>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A

Probab=98.08  E-value=2.1e-06  Score=48.13  Aligned_cols=63  Identities=22%  Similarity=0.230  Sum_probs=52.9

Q ss_pred             cccccCC--CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 034553            2 VLDCDCH--NVKALYRRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQKSLKQLQAESNKRDA   65 (91)
Q Consensus         2 al~~~p~--~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~~   65 (91)
                      +++.+|.  +...++.+|.+++.+|+|++|+..+++ ++++|.+..+.-.+.++--.++++.++..
T Consensus        15 ~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~   79 (84)
T PF12895_consen   15 LLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIK   79 (84)
T ss_dssp             HHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred             HHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHH
Confidence            3556674  567788899999999999999999999 88999988888888999999988887643

>PRK15174 Vi polysaccharide export protein VexE; Provisional

Probab=98.07  E-value=1.6e-05  Score=59.60  Aligned_cols=85  Identities=11%  Similarity=0.001  Sum_probs=68.9

Q ss_pred             cccccCCCHHHHHHHHHHHHHhCCHHH----HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccC
Q 034553            2 VLDCDCHNVKALYRRAQVYMEIADLIL----AELDIKKAIEADPQNREVKLLQKSLKQLQAESNKRDAKFYANMFARVTK   77 (91)
Q Consensus         2 al~~~p~~~ka~~rrg~a~~~lg~~~~----A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~mf~~~~~   77 (91)
                      +++++|+++.+++.+|.++..+|++++    |+..|+++++++|++..+...+..+....++..++. ..+++.....+.
T Consensus       238 al~~~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~-~~l~~al~l~P~  316 (656)
T PRK15174        238 ALARGLDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSDNVRIVTLYADALIRTGQNEKAI-PLLQQSLATHPD  316 (656)
T ss_pred             HHhcCCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHH-HHHHHHHHhCCC
Confidence            567899999999999999999999986    899999999999999999999988888888777764 356676666655


Q ss_pred             Cchhhhhhhh
Q 034553           78 DSSVATKVGY   87 (91)
Q Consensus        78 ~~~~~~~~g~   87 (91)
                      ...+...+|.
T Consensus       317 ~~~a~~~La~  326 (656)
T PRK15174        317 LPYVRAMYAR  326 (656)
T ss_pred             CHHHHHHHHH
Confidence            5555555543

>PRK10803 tol-pal system protein YbgF; Provisional

Probab=98.06  E-value=3.6e-05  Score=52.17  Aligned_cols=76  Identities=11%  Similarity=0.083  Sum_probs=57.2

Q ss_pred             ccccCCC---HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCH---HHHHHHHHHHHHHHHHHHHHHHHHHHhhhccc
Q 034553            3 LDCDCHN---VKALYRRAQVYMEIADLILAELDIKKAIEADPQNR---EVKLLQKSLKQLQAESNKRDAKFYANMFARVT   76 (91)
Q Consensus         3 l~~~p~~---~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~---~~~~~l~~~~~~~~~~~~~~~~~~~~mf~~~~   76 (91)
                      |+..|++   +.++|.+|.+++..|++++|+..|+++++..|++.   ++.-.+..+...++...++ +..+..+....+
T Consensus       170 l~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~~~~~~g~~~~A-~~~~~~vi~~yP  248 (263)
T PRK10803        170 VKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGVIMQDKGDTAKA-KAVYQQVIKKYP  248 (263)
T ss_pred             HHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHHHHHHcCCHHHH-HHHHHHHHHHCc
Confidence            5667877   57999999999999999999999999999988864   5666666666666655554 345666666665


Q ss_pred             CCc
Q 034553           77 KDS   79 (91)
Q Consensus        77 ~~~   79 (91)
                      +..
T Consensus       249 ~s~  251 (263)
T PRK10803        249 GTD  251 (263)
T ss_pred             CCH
Confidence            543

>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional

Probab=98.04  E-value=8.5e-05  Score=46.86  Aligned_cols=73  Identities=19%  Similarity=0.063  Sum_probs=65.0

Q ss_pred             cccc-CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccc
Q 034553            3 LDCD-CHNVKALYRRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQKSLKQLQAESNKRDAKFYANMFARVT   76 (91)
Q Consensus         3 l~~~-p~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~mf~~~~   76 (91)
                      ..++ ++....+|..|.-++..|++++|...|+-+..+||.+...+-.|..+.+..+++.++- ..|...+....
T Consensus        27 ~~~~~~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI-~aY~~A~~L~~  100 (157)
T PRK15363         27 LDDDVTQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAI-YAYGRAAQIKI  100 (157)
T ss_pred             HCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHH-HHHHHHHhcCC
Confidence            3456 7788999999999999999999999999999999999999999999999999999884 46777776644

>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C

Probab=98.01  E-value=0.0002  Score=38.29  Aligned_cols=64  Identities=19%  Similarity=0.140  Sum_probs=51.5

Q ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccc
Q 034553           12 ALYRRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQKSLKQLQAESNKRDAKFYANMFARVT   76 (91)
Q Consensus        12 a~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~mf~~~~   76 (91)
                      +++.+|.++...|++++|+..+++++++.|++..+...+..+....+...++. ..+.......+
T Consensus         2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~-~~~~~~~~~~~   65 (100)
T cd00189           2 ALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEAL-EDYEKALELDP   65 (100)
T ss_pred             HHHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhCCC
Confidence            68899999999999999999999999999999888888888887777766653 34455444433

>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=98.00  E-value=2.1e-05  Score=58.94  Aligned_cols=62  Identities=18%  Similarity=0.096  Sum_probs=45.4

Q ss_pred             cccccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
Q 034553            2 VLDCDCHNVKALYRRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQKSLKQLQAESNKR   63 (91)
Q Consensus         2 al~~~p~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~   63 (91)
                      ||.+.|+++.+.+.+|.++..+|.+++|...|.+++++.|.-+++.+.|..+.+..+...++
T Consensus       346 aL~l~p~hadam~NLgni~~E~~~~e~A~~ly~~al~v~p~~aaa~nNLa~i~kqqgnl~~A  407 (966)
T KOG4626|consen  346 ALRLCPNHADAMNNLGNIYREQGKIEEATRLYLKALEVFPEFAAAHNNLASIYKQQGNLDDA  407 (966)
T ss_pred             HHHhCCccHHHHHHHHHHHHHhccchHHHHHHHHHHhhChhhhhhhhhHHHHHHhcccHHHH
Confidence            56777777777777777777777777777777777777777777777777666666555544

>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW

Probab=97.98  E-value=7.3e-05  Score=47.14  Aligned_cols=79  Identities=24%  Similarity=0.276  Sum_probs=62.5

Q ss_pred             CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCchhhhhhhhc
Q 034553            9 NVKALYRRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQKSLKQLQAESNKRDAKFYANMFARVTKDSSVATKVGYF   88 (91)
Q Consensus         9 ~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~mf~~~~~~~~~~~~~g~f   88 (91)
                      .+.+++.+|.++...|++++|+..++++++.+|++..+...+..+....++..++. ..+.+.....+........+|.+
T Consensus        30 ~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~-~~~~~al~~~~~~~~~~~~~~~~  108 (234)
T TIGR02521        30 AAKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAE-DSFRRALTLNPNNGDVLNNYGTF  108 (234)
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHH-HHHHHHHhhCCCCHHHHHHHHHH
Confidence            47889999999999999999999999999999999998888888888877776653 35666666555544455555543

Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.

>PRK10049 pgaA outer membrane protein PgaA; Provisional

Probab=97.98  E-value=4.6e-05  Score=58.04  Aligned_cols=73  Identities=21%  Similarity=0.047  Sum_probs=56.2

Q ss_pred             cccccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 034553            2 VLDCDCHNVKALYRRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQKSLKQLQAESNKRDAKFYANMFARV   75 (91)
Q Consensus         2 al~~~p~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~mf~~~   75 (91)
                      ++...|+++.+++.+|.++...|++++|+..++++++++|++..+...+..+....++..+++. .++.+....
T Consensus       385 al~~~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~-~~~~ll~~~  457 (765)
T PRK10049        385 LAYNAPGNQGLRIDYASVLQARGWPRAAENELKKAEVLEPRNINLEVEQAWTALDLQEWRQMDV-LTDDVVARE  457 (765)
T ss_pred             HHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHHH-HHHHHHHhC
Confidence            4567899999999999999999999999999999999999988777777777666666666543 344444443

>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein

Probab=97.98  E-value=3.7e-05  Score=57.08  Aligned_cols=87  Identities=15%  Similarity=0.088  Sum_probs=65.5

Q ss_pred             cccccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCchh
Q 034553            2 VLDCDCHNVKALYRRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQKSLKQLQAESNKRDAKFYANMFARVTKDSSV   81 (91)
Q Consensus         2 al~~~p~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~mf~~~~~~~~~   81 (91)
                      +++.+|+++.++...|.++..+|+ ++|+..+++++++.|++..+...+..+....+...++. ..++++....+....+
T Consensus       796 ~~~~~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~-~~~~~a~~~~~~~~~~  873 (899)
T TIGR02917       796 VVKKAPDNAVVLNNLAWLYLELKD-PRALEYAEKALKLAPNIPAILDTLGWLLVEKGEADRAL-PLLRKAVNIAPEAAAI  873 (899)
T ss_pred             HHHhCCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHH-HHHHHHHhhCCCChHH
Confidence            456778888888888888888888 77888888888888888888777777777777666664 3677777776666666


Q ss_pred             hhhhhhccc
Q 034553           82 ATKVGYFAC   90 (91)
Q Consensus        82 ~~~~g~f~~   90 (91)
                      ..+++..+|
T Consensus       874 ~~~l~~~~~  882 (899)
T TIGR02917       874 RYHLALALL  882 (899)
T ss_pred             HHHHHHHHH
Confidence            766666554

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.

>KOG1125 consensus TPR repeat-containing protein [General function prediction only]

Probab=97.97  E-value=4.5e-05  Score=56.13  Aligned_cols=70  Identities=14%  Similarity=0.085  Sum_probs=59.9

Q ss_pred             cccccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 034553            2 VLDCDCHNVKALYRRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQKSLKQLQAESNKRDAKFYANMF   72 (91)
Q Consensus         2 al~~~p~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~mf   72 (91)
                      |+..||.+++||.++|.+....++-..|+..++++++|+|+|.++...|.....-.....++-+ +..+|.
T Consensus       311 AVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~Al~-~L~~Wi  380 (579)
T KOG1125|consen  311 AVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQNQALK-MLDKWI  380 (579)
T ss_pred             HHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHHHHH-HHHHHH
Confidence            5788999999999999999999999999999999999999999999998877766666665533 455554

>PRK02603 photosystem I assembly protein Ycf3; Provisional

Probab=97.96  E-value=6.4e-05  Score=47.32  Aligned_cols=72  Identities=11%  Similarity=0.076  Sum_probs=48.9

Q ss_pred             ccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCC---HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccC
Q 034553            5 CDCHNVKALYRRAQVYMEIADLILAELDIKKAIEADPQN---REVKLLQKSLKQLQAESNKRDAKFYANMFARVTK   77 (91)
Q Consensus         5 ~~p~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~---~~~~~~l~~~~~~~~~~~~~~~~~~~~mf~~~~~   77 (91)
                      .+|....+++++|..+...|++++|+..|++++++.|+.   ..+...+..+....+...++.. .+.+.....+.
T Consensus        30 ~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~-~~~~al~~~p~  104 (172)
T PRK02603         30 KKAKEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALE-YYHQALELNPK  104 (172)
T ss_pred             cHhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHH-HHHHHHHhCcc
Confidence            345667778888888888888888888888888877653   3566666777766666666533 44555544333

>CHL00033 ycf3 photosystem I assembly protein Ycf3

Probab=97.95  E-value=7.6e-05  Score=46.72  Aligned_cols=56  Identities=11%  Similarity=0.011  Sum_probs=45.6

Q ss_pred             cccccCC---CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
Q 034553            2 VLDCDCH---NVKALYRRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQKSLKQLQ   57 (91)
Q Consensus         2 al~~~p~---~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~   57 (91)
                      ++.+.|+   .+.+|+..|.++..+|++++|+..|++++.++|.+......+..+...+
T Consensus        61 al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la~i~~~~  119 (168)
T CHL00033         61 AMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMAVICHYR  119 (168)
T ss_pred             HHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHh
Confidence            3445454   3458999999999999999999999999999999988777777777633

>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A

Probab=97.94  E-value=9.7e-06  Score=38.76  Aligned_cols=29  Identities=21%  Similarity=0.166  Sum_probs=25.2

Q ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHHHC
Q 034553           12 ALYRRAQVYMEIADLILAELDIKKAIEAD   40 (91)
Q Consensus        12 a~~rrg~a~~~lg~~~~A~~~~~~al~l~   40 (91)
                      +|..+|.++..+|+|++|+..|+++|.+.
T Consensus         1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l~   29 (36)
T PF13176_consen    1 ALNNLGRIYRQQGDYEKAIEYYEQALALA   29 (36)
T ss_dssp             HHHHHHHHHHHCT-HHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence            68899999999999999999999977654

>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A

Probab=97.94  E-value=4.8e-05  Score=40.53  Aligned_cols=54  Identities=19%  Similarity=0.265  Sum_probs=44.5

Q ss_pred             HHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 034553           20 YMEIADLILAELDIKKAIEADPQNREVKLLQKSLKQLQAESNKRDAKFYANMFAR   74 (91)
Q Consensus        20 ~~~lg~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~mf~~   74 (91)
                      ++..|+|++|+..|++++..+|+|.++...+..+....++..++.. .+.++...
T Consensus         1 ll~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~-~l~~~~~~   54 (68)
T PF14559_consen    1 LLKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEE-LLERLLKQ   54 (68)
T ss_dssp             HHHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHH-HHHCCHGG
T ss_pred             ChhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHH-HHHHHHHH
Confidence            4678999999999999999999999999999999999998887743 44544444

...

>PRK10049 pgaA outer membrane protein PgaA; Provisional

Probab=97.94  E-value=5.1e-05  Score=57.76  Aligned_cols=82  Identities=10%  Similarity=0.039  Sum_probs=52.6

Q ss_pred             cccccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCchh
Q 034553            2 VLDCDCHNVKALYRRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQKSLKQLQAESNKRDAKFYANMFARVTKDSSV   81 (91)
Q Consensus         2 al~~~p~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~mf~~~~~~~~~   81 (91)
                      +|+++|.++.+++..|.++...|++++|+..++++++.+|++.. ...+..+....+...++. ..+.++....+.....
T Consensus        75 al~~~P~~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~~P~~~~-~~~la~~l~~~g~~~~Al-~~l~~al~~~P~~~~~  152 (765)
T PRK10049         75 ALSLEPQNDDYQRGLILTLADAGQYDEALVKAKQLVSGAPDKAN-LLALAYVYKRAGRHWDEL-RAMTQALPRAPQTQQY  152 (765)
T ss_pred             HHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHCCCHHHHH-HHHHHHHHhCCCCHHH
Confidence            45667777777777777777777777777777777777777777 666666666655555543 3456666655554444


Q ss_pred             hhhh
Q 034553           82 ATKV   85 (91)
Q Consensus        82 ~~~~   85 (91)
                      ...+
T Consensus       153 ~~~l  156 (765)
T PRK10049        153 PTEY  156 (765)
T ss_pred             HHHH
Confidence            3333

>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO

Probab=97.93  E-value=9.8e-05  Score=48.17  Aligned_cols=44  Identities=16%  Similarity=0.099  Sum_probs=34.0

Q ss_pred             cccccCCCH---HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHH
Q 034553            2 VLDCDCHNV---KALYRRAQVYMEIADLILAELDIKKAIEADPQNRE   45 (91)
Q Consensus         2 al~~~p~~~---ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~   45 (91)
                      ++..+|+++   .+++.+|.+++..|++++|+..|+++++..|++..
T Consensus        59 ~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~  105 (235)
T TIGR03302        59 LESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPD  105 (235)
T ss_pred             HHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCc
Confidence            345666654   67788888888888888888888888888887665

Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).

>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]

Probab=97.89  E-value=3.9e-05  Score=57.83  Aligned_cols=62  Identities=8%  Similarity=0.062  Sum_probs=57.9

Q ss_pred             cccccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
Q 034553            2 VLDCDCHNVKALYRRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQKSLKQLQAESNKR   63 (91)
Q Consensus         2 al~~~p~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~   63 (91)
                      +++++|-....||++|.+..++++++.|.++|.+++.++|++.++++.+.....+++...++
T Consensus       511 sl~~nplq~~~wf~~G~~ALqlek~q~av~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra  572 (777)
T KOG1128|consen  511 SLEINPLQLGTWFGLGCAALQLEKEQAAVKAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRA  572 (777)
T ss_pred             HhhcCccchhHHHhccHHHHHHhhhHHHHHHHHHHhhcCCCchhhhhhhhHHHHHHhhhHHH
Confidence            47889999999999999999999999999999999999999999999999999888877664

>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]

Probab=97.83  E-value=0.00011  Score=54.78  Aligned_cols=45  Identities=20%  Similarity=0.136  Sum_probs=27.9

Q ss_pred             CcccccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHH
Q 034553            1 MVLDCDCHNVKALYRRAQVYMEIADLILAELDIKKAIEADPQNRE   45 (91)
Q Consensus         1 ~al~~~p~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~   45 (91)
                      +|+++||.|.--....|.++.++|+.++|+..|++|+.+||.|+.
T Consensus       514 kA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l  558 (638)
T KOG1126|consen  514 KAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPL  558 (638)
T ss_pred             hhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCch
Confidence            355666666666666666666666666666666666666666543

>PF13371 TPR_9: Tetratricopeptide repeat

Probab=97.82  E-value=0.00018  Score=38.74  Aligned_cols=59  Identities=17%  Similarity=0.144  Sum_probs=51.3

Q ss_pred             HHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccc
Q 034553           17 AQVYMEIADLILAELDIKKAIEADPQNREVKLLQKSLKQLQAESNKRDAKFYANMFARVT   76 (91)
Q Consensus        17 g~a~~~lg~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~mf~~~~   76 (91)
                      ..++...++|++|+..+++++.++|++..++..+..+....+...++. ..+.++....+
T Consensus         2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~-~~l~~~l~~~p   60 (73)
T PF13371_consen    2 KQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEAL-EDLERALELSP   60 (73)
T ss_pred             HHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHH-HHHHHHHHHCC
Confidence            467899999999999999999999999999999999999999988874 45677766644

>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=97.82  E-value=7.6e-05  Score=53.49  Aligned_cols=62  Identities=21%  Similarity=0.155  Sum_probs=50.6

Q ss_pred             cccccCCC----HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
Q 034553            2 VLDCDCHN----VKALYRRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQKSLKQLQAESNKR   63 (91)
Q Consensus         2 al~~~p~~----~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~   63 (91)
                      +|.+||+|    ++.|+.||.+...+|+..+|+.+++++++|||..-.+......+...+.+..++
T Consensus       275 al~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c~l~le~~e~A  340 (486)
T KOG0550|consen  275 ALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANCHLALEKWEEA  340 (486)
T ss_pred             hhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHH
Confidence            68889965    566999999999999999999999999999998766666666666666655544

>KOG4234 consensus TPR repeat-containing protein [General function prediction only]

Probab=97.81  E-value=0.00014  Score=48.19  Aligned_cols=68  Identities=15%  Similarity=0.104  Sum_probs=52.1

Q ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCc
Q 034553           11 KALYRRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQKSLKQLQAESNKRDAKFYANMFARVTKDS   79 (91)
Q Consensus        11 ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~mf~~~~~~~   79 (91)
                      -.|..||.|+++++.++.|+.++.++++|+|.+..+......+...+..+.++ -.-|+++....++..
T Consensus       135 Ily~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek~ek~eea-leDyKki~E~dPs~~  202 (271)
T KOG4234|consen  135 ILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEKMEKYEEA-LEDYKKILESDPSRR  202 (271)
T ss_pred             HHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHhhhhHHHH-HHHHHHHHHhCcchH
Confidence            35789999999999999999999999999999877766666666666555444 234677776666544

>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO

Probab=97.81  E-value=0.00024  Score=46.34  Aligned_cols=75  Identities=9%  Similarity=-0.016  Sum_probs=59.6

Q ss_pred             cccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCH---HHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCc
Q 034553            4 DCDCHNVKALYRRAQVYMEIADLILAELDIKKAIEADPQNR---EVKLLQKSLKQLQAESNKRDAKFYANMFARVTKDS   79 (91)
Q Consensus         4 ~~~p~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~---~~~~~l~~~~~~~~~~~~~~~~~~~~mf~~~~~~~   79 (91)
                      ..++..+.+++.+|.+++..|++++|+..|++++..+|+++   .+...+..+....++..++. ..+.++....++..
T Consensus        27 ~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~-~~~~~~l~~~p~~~  104 (235)
T TIGR03302        27 PVEEWPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAI-AAADRFIRLHPNHP  104 (235)
T ss_pred             CcccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHH-HHHHHHHHHCcCCC
Confidence            35677899999999999999999999999999999999876   45566677777777776663 46777777665443

Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).

>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=97.79  E-value=0.00026  Score=51.52  Aligned_cols=72  Identities=15%  Similarity=0.136  Sum_probs=63.7

Q ss_pred             CcccccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 034553            1 MVLDCDCHNVKALYRRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQKSLKQLQAESNKRDAKFYANMFA   73 (91)
Q Consensus         1 ~al~~~p~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~mf~   73 (91)
                      +|+.+.|+++.-|.-+|.+|.++++.++|+..|.+|+.+...+..+...|..+.+.++...++ .+.|.+...
T Consensus       423 kA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l~~LakLye~l~d~~eA-a~~yek~v~  494 (559)
T KOG1155|consen  423 KALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSALVRLAKLYEELKDLNEA-AQYYEKYVE  494 (559)
T ss_pred             HHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhHHHH-HHHHHHHHH
Confidence            467899999999999999999999999999999999999888889999999999999998886 345555443

>PRK11906 transcriptional regulator; Provisional

Probab=97.78  E-value=0.00013  Score=52.72  Aligned_cols=63  Identities=8%  Similarity=-0.048  Sum_probs=53.0

Q ss_pred             CcccccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
Q 034553            1 MVLDCDCHNVKALYRRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQKSLKQLQAESNKR   63 (91)
Q Consensus         1 ~al~~~p~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~   63 (91)
                      +|+++||.++.|++..|.++...++++.|...|++|+.++|+.+.+.-...-+.-..++..++
T Consensus       329 rAveld~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a  391 (458)
T PRK11906        329 YVSDITTVDGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEA  391 (458)
T ss_pred             HHHhcCCCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHH
Confidence            378999999999999999999999999999999999999999998777776655555444443

>PRK11447 cellulose synthase subunit BcsC; Provisional

Probab=97.77  E-value=0.00015  Score=57.41  Aligned_cols=57  Identities=12%  Similarity=0.099  Sum_probs=27.7

Q ss_pred             cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH
Q 034553            6 DCHNVKALYRRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQKSLKQLQAESNK   62 (91)
Q Consensus         6 ~p~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~   62 (91)
                      +|.++.+++.+|.++..+|++++|+..|+++++++|++..++..+..+....++..+
T Consensus       599 ~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~~g~~~e  655 (1157)
T PRK11447        599 QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPGNADARLGLIEVDIAQGDLAA  655 (1157)
T ss_pred             CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHH
Confidence            444444555555555555555555555555555555554444444444444444333

>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF

Probab=97.76  E-value=8.8e-05  Score=42.95  Aligned_cols=50  Identities=24%  Similarity=0.240  Sum_probs=42.3

Q ss_pred             cccccCCC---HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHH
Q 034553            2 VLDCDCHN---VKALYRRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQK   51 (91)
Q Consensus         2 al~~~p~~---~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~~~~~l~   51 (91)
                      ++..+|++   +.+++..|.++..+|++++|+..++++++..|++..+...+.
T Consensus        65 ~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~  117 (119)
T TIGR02795        65 VVKKYPKSPKAPDALLKLGMSLQELGDKEKAKATLQQVIKRYPGSSAAKLAQK  117 (119)
T ss_pred             HHHHCCCCCcccHHHHHHHHHHHHhCChHHHHHHHHHHHHHCcCChhHHHHHh
Confidence            34566764   678999999999999999999999999999999987665543

Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.

>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=97.76  E-value=0.00024  Score=50.56  Aligned_cols=73  Identities=12%  Similarity=0.120  Sum_probs=59.7

Q ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCchhhh
Q 034553           10 VKALYRRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQKSLKQLQAESNKRDAKFYANMFARVTKDSSVAT   83 (91)
Q Consensus        10 ~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~mf~~~~~~~~~~~   83 (91)
                      ..+|.+.+.++.++++|..|+..++++|+++|+|..+.-...++...+.++..+ +.-++++...-+....+.+
T Consensus       257 ~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A-~~df~ka~k~~P~Nka~~~  329 (397)
T KOG0543|consen  257 LACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLA-RDDFQKALKLEPSNKAARA  329 (397)
T ss_pred             HHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHH-HHHHHHHHHhCCCcHHHHH
Confidence            357899999999999999999999999999999998888888888888887776 3456777766666555544

>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B

Probab=97.75  E-value=0.00014  Score=41.74  Aligned_cols=62  Identities=13%  Similarity=0.112  Sum_probs=49.1

Q ss_pred             cccccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCC--HHHHHHHHHHHHHHHHHHHH
Q 034553            2 VLDCDCHNVKALYRRAQVYMEIADLILAELDIKKAIEADPQN--REVKLLQKSLKQLQAESNKR   63 (91)
Q Consensus         2 al~~~p~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~--~~~~~~l~~~~~~~~~~~~~   63 (91)
                      +++.+|++..+.|..|.+++..|++++|++.+-.++..+|+.  ..++..+-.+-..++....-
T Consensus        14 ~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~~~pl   77 (90)
T PF14561_consen   14 ALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGPGDPL   77 (90)
T ss_dssp             HHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-TT-HH
T ss_pred             HHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCCCChH
Confidence            467799999999999999999999999999999999998865  57888887777777765543

>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=97.74  E-value=0.00015  Score=52.24  Aligned_cols=89  Identities=12%  Similarity=0.064  Sum_probs=70.5

Q ss_pred             CcccccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCch
Q 034553            1 MVLDCDCHNVKALYRRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQKSLKQLQAESNKRDAKFYANMFARVTKDSS   80 (91)
Q Consensus         1 ~al~~~p~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~mf~~~~~~~~   80 (91)
                      ++|+.+|++..||.-+|.++..+++.++|+-.|+.|..|.|..-++...|-...-..+..+++- .+....+..++....
T Consensus       325 K~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~kEA~-~~An~~~~~~~~sA~  403 (564)
T KOG1174|consen  325 KCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRFKEAN-ALANWTIRLFQNSAR  403 (564)
T ss_pred             HHhccCcccchHHHhccHHHHhccchHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhchHHHHH-HHHHHHHHHhhcchh
Confidence            4789999999999999999999999999999999999999998888888877776666666653 244555556666666


Q ss_pred             hhhhhhhccc
Q 034553           81 VATKVGYFAC   90 (91)
Q Consensus        81 ~~~~~g~f~~   90 (91)
                      +.+=+|.-.|
T Consensus       404 ~LtL~g~~V~  413 (564)
T KOG1174|consen  404 SLTLFGTLVL  413 (564)
T ss_pred             hhhhhcceee
Confidence            6666664433

>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]

Probab=97.74  E-value=0.00016  Score=44.74  Aligned_cols=52  Identities=15%  Similarity=0.225  Sum_probs=46.0

Q ss_pred             CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH
Q 034553            8 HNVKALYRRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQKSLKQLQAE   59 (91)
Q Consensus         8 ~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~   59 (91)
                      .....+|..+..++++++|+.|+..++..|+.+|+|..+......++.++..
T Consensus        69 ~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa~~Lk~~ied~itk  120 (149)
T KOG3364|consen   69 RRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQALELKETIEDKITK  120 (149)
T ss_pred             cchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHhh
Confidence            3566789999999999999999999999999999999999888887776654

>PRK11447 cellulose synthase subunit BcsC; Provisional

Probab=97.73  E-value=0.00014  Score=57.59  Aligned_cols=73  Identities=12%  Similarity=0.090  Sum_probs=62.4

Q ss_pred             cccccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 034553            2 VLDCDCHNVKALYRRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQKSLKQLQAESNKRDAKFYANMFARV   75 (91)
Q Consensus         2 al~~~p~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~mf~~~   75 (91)
                      +++++|+++.+++.+|.++..+|++++|+..|+++++.+|++..+...+..+....++..++. +.+.++....
T Consensus       629 al~~~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~p~~~~~~~~la~~~~~~g~~~eA~-~~~~~al~~~  701 (1157)
T PRK11447        629 VLTREPGNADARLGLIEVDIAQGDLAAARAQLAKLPATANDSLNTQRRVALAWAALGDTAAAQ-RTFNRLIPQA  701 (1157)
T ss_pred             HHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHhCCCHHHHH-HHHHHHhhhC
Confidence            678899999999999999999999999999999999999999988888888887777776664 3566666543

>PRK02603 photosystem I assembly protein Ycf3; Provisional

Probab=97.73  E-value=0.00012  Score=46.05  Aligned_cols=58  Identities=16%  Similarity=0.117  Sum_probs=46.7

Q ss_pred             cccccCC---CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH
Q 034553            2 VLDCDCH---NVKALYRRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQKSLKQLQAE   59 (91)
Q Consensus         2 al~~~p~---~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~   59 (91)
                      +++++|+   ...+++.+|.++..+|++++|+..+++++.++|++......+..+...+++
T Consensus        61 al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~  121 (172)
T PRK02603         61 ALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAVIYHKRGE  121 (172)
T ss_pred             HHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCC
Confidence            3444444   357999999999999999999999999999999998877777666655443

>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B

Probab=97.72  E-value=3.3e-05  Score=51.88  Aligned_cols=55  Identities=13%  Similarity=0.117  Sum_probs=22.4

Q ss_pred             CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH
Q 034553            8 HNVKALYRRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQKSLKQLQAESNK   62 (91)
Q Consensus         8 ~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~   62 (91)
                      +++..+...|.++..+|++++|+..|+++++.+|+|+.+...+..+-...+...+
T Consensus       212 ~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d~~~~~~~a~~l~~~g~~~~  266 (280)
T PF13429_consen  212 DDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPDDPLWLLAYADALEQAGRKDE  266 (280)
T ss_dssp             TSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHT-------
T ss_pred             CHHHHHHHHHHHhcccccccccccccccccccccccccccccccccccccccccc
Confidence            3333444445555555555555555555555555555554444444444444443

>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]

Probab=97.71  E-value=5.9e-05  Score=52.78  Aligned_cols=44  Identities=18%  Similarity=0.215  Sum_probs=37.1

Q ss_pred             CcccccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCH
Q 034553            1 MVLDCDCHNVKALYRRAQVYMEIADLILAELDIKKAIEADPQNR   44 (91)
Q Consensus         1 ~al~~~p~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~   44 (91)
                      +|+.++|.+.||++|-|.|++.|..+.+|+..++.++.++-+..
T Consensus       144 ~al~~~P~h~Ka~~R~Akc~~eLe~~~~a~nw~ee~~~~d~e~K  187 (390)
T KOG0551|consen  144 AALKLKPTHLKAYIRGAKCLLELERFAEAVNWCEEGLQIDDEAK  187 (390)
T ss_pred             HHHhcCcchhhhhhhhhHHHHHHHHHHHHHHHHhhhhhhhHHHH
Confidence            47889999999999999999999998888888888777654433

>PRK11788 tetratricopeptide repeat protein; Provisional

Probab=97.70  E-value=0.00016  Score=50.05  Aligned_cols=61  Identities=20%  Similarity=0.136  Sum_probs=37.9

Q ss_pred             cccccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCH-HHHHHHHHHHHHHHHHHH
Q 034553            2 VLDCDCHNVKALYRRAQVYMEIADLILAELDIKKAIEADPQNR-EVKLLQKSLKQLQAESNK   62 (91)
Q Consensus         2 al~~~p~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~-~~~~~l~~~~~~~~~~~~   62 (91)
                      +++.+|++..+++.+|.++...|++++|+..++++++.+|.+. .+...+..+....+...+
T Consensus       206 al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~  267 (389)
T PRK11788        206 ALAADPQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAE  267 (389)
T ss_pred             HHhHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHH
Confidence            3456677777777777777777777777777777777776653 334444444444443333

>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]

Probab=97.67  E-value=0.00014  Score=49.81  Aligned_cols=51  Identities=22%  Similarity=0.160  Sum_probs=36.3

Q ss_pred             cccccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHH
Q 034553            2 VLDCDCHNVKALYRRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQKS   52 (91)
Q Consensus         2 al~~~p~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~~~~~l~~   52 (91)
                      +|.+||+|+.+.+..|..++..|+|.+|+...++.+.+.|.+..-+..+++
T Consensus       219 al~~D~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~~rr~~ie~  269 (287)
T COG4235         219 ALALDPANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLLPADDPRRSLIER  269 (287)
T ss_pred             HHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCCCCCchHHHHHH
Confidence            567777777777777777777777777777777777777766544444433

>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H

Probab=97.65  E-value=0.00014  Score=39.79  Aligned_cols=65  Identities=14%  Similarity=0.031  Sum_probs=48.2

Q ss_pred             CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH---CCC-C---HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 034553            7 CHNVKALYRRAQVYMEIADLILAELDIKKAIEA---DPQ-N---REVKLLQKSLKQLQAESNKRDAKFYANMF   72 (91)
Q Consensus         7 p~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l---~p~-~---~~~~~~l~~~~~~~~~~~~~~~~~~~~mf   72 (91)
                      |+-..++..+|.++..+|+|++|+..|++++++   -++ +   ..+...+..+....++..++.. .+.+.+
T Consensus         2 ~~~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~-~~~~al   73 (78)
T PF13424_consen    2 PDTANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALE-YYQKAL   73 (78)
T ss_dssp             HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHH-HHHHHH
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHH-HHHHHH
Confidence            455788999999999999999999999999987   222 2   2466777888888888777643 444444

...

>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional

Probab=97.65  E-value=6.7e-05  Score=54.15  Aligned_cols=39  Identities=15%  Similarity=0.069  Sum_probs=36.7

Q ss_pred             CcccccCCCHHH---HHHHHHHHHHhCCHHHHHHHHHHHHHH
Q 034553            1 MVLDCDCHNVKA---LYRRAQVYMEIADLILAELDIKKAIEA   39 (91)
Q Consensus         1 ~al~~~p~~~ka---~~rrg~a~~~lg~~~~A~~~~~~al~l   39 (91)
                      +||+++|++..+   ||.+|.+|..+|++++|+.++++|+++
T Consensus       100 rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel  141 (453)
T PLN03098        100 TALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD  141 (453)
T ss_pred             HHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            378999999976   999999999999999999999999998

>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]

Probab=97.62  E-value=8.7e-05  Score=56.25  Aligned_cols=62  Identities=23%  Similarity=0.253  Sum_probs=47.9

Q ss_pred             cccccCCCHHHHHHHHHHHHHhCCHHHHHH--HHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
Q 034553            2 VLDCDCHNVKALYRRAQVYMEIADLILAEL--DIKKAIEADPQNREVKLLQKSLKQLQAESNKR   63 (91)
Q Consensus         2 al~~~p~~~ka~~rrg~a~~~lg~~~~A~~--~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~   63 (91)
                      |+.+||+++....-.|.++...|+..-|..  .+..++++||.|.+++..+..+-+..+...++
T Consensus       710 Al~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~A  773 (799)
T KOG4162|consen  710 ALALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQA  773 (799)
T ss_pred             HHhcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHH
Confidence            466788888888888888888887777776  77778888888888888888887777776654

>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]

Probab=97.60  E-value=0.00017  Score=55.43  Aligned_cols=65  Identities=22%  Similarity=0.241  Sum_probs=56.0

Q ss_pred             CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 034553            8 HNVKALYRRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQKSLKQLQAESNKRDAKFYANMFA   73 (91)
Q Consensus         8 ~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~mf~   73 (91)
                      ++.-.|++.|.+++.+|.++.|++.|.+++.++|++.+++-.|..+...++...++. +....|+.
T Consensus       447 ~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~Ekal-EtL~~~~~  511 (895)
T KOG2076|consen  447 QNAFVWYKLARCYMELGEYEEAIEFYEKVLILAPDNLDARITLASLYQQLGNHEKAL-ETLEQIIN  511 (895)
T ss_pred             cchhhhHHHHHHHHHHhhHHHHHHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHH-HHHhcccC
Confidence            356689999999999999999999999999999999999999999999998887653 34555553

>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=97.58  E-value=0.00019  Score=52.99  Aligned_cols=56  Identities=18%  Similarity=0.064  Sum_probs=49.3

Q ss_pred             CcccccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Q 034553            1 MVLDCDCHNVKALYRRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQKSLKQL   56 (91)
Q Consensus         1 ~al~~~p~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~   56 (91)
                      ++|.+.|.++.+|--.|.++..+|+++.|++.|.++|.++|+|..+...|..+-..
T Consensus       480 ~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n~~~~~lL~~aie~  535 (611)
T KOG1173|consen  480 KALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALALKPDNIFISELLKLAIED  535 (611)
T ss_pred             HHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCccHHHHHHHHHHHHh
Confidence            36788999999999999999999999999999999999999998888877755443

>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]

Probab=97.54  E-value=0.0005  Score=49.95  Aligned_cols=65  Identities=12%  Similarity=-0.058  Sum_probs=58.5

Q ss_pred             cccccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 034553            2 VLDCDCHNVKALYRRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQKSLKQLQAESNKRDAK   66 (91)
Q Consensus         2 al~~~p~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~~~   66 (91)
                      ++.++|+..-..+..|.+++..|++.+|+..+++.+.-+|+|+..+..|.+....++...+....
T Consensus       366 al~l~P~~~~l~~~~a~all~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A  430 (484)
T COG4783         366 ALALDPNSPLLQLNLAQALLKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLA  430 (484)
T ss_pred             HHhcCCCccHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHH
Confidence            67889999889999999999999999999999999999999999999999999988887776554

>PRK10153 DNA-binding transcriptional activator CadC; Provisional

Probab=97.50  E-value=0.00076  Score=49.69  Aligned_cols=71  Identities=14%  Similarity=-0.025  Sum_probs=59.5

Q ss_pred             ccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccC
Q 034553            5 CDCHNVKALYRRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQKSLKQLQAESNKRDAKFYANMFARVTK   77 (91)
Q Consensus         5 ~~p~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~mf~~~~~   77 (91)
                      .+|..+.+|.-.|......|++++|...+++|+.++| +..+...+..+....++..++. ..|.+.+...+.
T Consensus       415 ~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~p-s~~a~~~lG~~~~~~G~~~eA~-~~~~~A~~L~P~  485 (517)
T PRK10153        415 ELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEM-SWLNYVLLGKVYELKGDNRLAA-DAYSTAFNLRPG  485 (517)
T ss_pred             cCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHcCCHHHHH-HHHHHHHhcCCC
Confidence            4778888999999999999999999999999999999 4788889999988888888774 467777766543

>KOG1125 consensus TPR repeat-containing protein [General function prediction only]

Probab=97.50  E-value=0.00023  Score=52.55  Aligned_cols=63  Identities=10%  Similarity=-0.076  Sum_probs=45.6

Q ss_pred             cccccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
Q 034553            2 VLDCDCHNVKALYRRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQKSLKQLQAESNKRD   64 (91)
Q Consensus         2 al~~~p~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~   64 (91)
                      ||..+|++..-|.|+|.++..-.+.++|+..|++||+|.|+..-++..|...-.-++.++++-
T Consensus       456 AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~  518 (579)
T KOG1125|consen  456 ALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAV  518 (579)
T ss_pred             HHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHH
Confidence            567777777777777777777777777777777777777777666666666666666665553

>CHL00033 ycf3 photosystem I assembly protein Ycf3

Probab=97.42  E-value=0.0016  Score=40.64  Aligned_cols=67  Identities=12%  Similarity=0.053  Sum_probs=51.7

Q ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCH---HHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccC
Q 034553           10 VKALYRRAQVYMEIADLILAELDIKKAIEADPQNR---EVKLLQKSLKQLQAESNKRDAKFYANMFARVTK   77 (91)
Q Consensus        10 ~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~---~~~~~l~~~~~~~~~~~~~~~~~~~~mf~~~~~   77 (91)
                      ..+|+..|.++..+|++++|+..|++++.+.|+..   .+...+..+....+...++.. .+.+.....+.
T Consensus        35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~-~~~~Al~~~~~  104 (168)
T CHL00033         35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALE-YYFQALERNPF  104 (168)
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHH-HHHHHHHhCcC
Confidence            56679999999999999999999999999977633   477778888877777777643 45555554433

>PRK11788 tetratricopeptide repeat protein; Provisional

Probab=97.42  E-value=0.00072  Score=46.86  Aligned_cols=36  Identities=11%  Similarity=0.046  Sum_probs=19.5

Q ss_pred             ccccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Q 034553            3 LDCDCHNVKALYRRAQVYMEIADLILAELDIKKAIE   38 (91)
Q Consensus         3 l~~~p~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~   38 (91)
                      ++.+|+++.+++.+|.++...|++++|+..+++++.
T Consensus        62 l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~   97 (389)
T PRK11788         62 LKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLS   97 (389)
T ss_pred             HhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhc
Confidence            444555555555555555555555555555555544

>PRK10153 DNA-binding transcriptional activator CadC; Provisional

Probab=97.41  E-value=0.00022  Score=52.44  Aligned_cols=44  Identities=18%  Similarity=0.116  Sum_probs=40.6

Q ss_pred             CcccccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHH
Q 034553            1 MVLDCDCHNVKALYRRAQVYMEIADLILAELDIKKAIEADPQNRE   45 (91)
Q Consensus         1 ~al~~~p~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~   45 (91)
                      +|++++| +..+|..+|.++...|++++|++.|++|+.++|.++.
T Consensus       445 rAl~L~p-s~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~pt  488 (517)
T PRK10153        445 KAIDLEM-SWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGENT  488 (517)
T ss_pred             HHHHcCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCch
Confidence            4788999 5889999999999999999999999999999999764

>KOG4555 consensus TPR repeat-containing protein [Function unknown]

Probab=97.37  E-value=0.00087  Score=41.74  Aligned_cols=42  Identities=26%  Similarity=0.082  Sum_probs=38.0

Q ss_pred             CcccccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCC
Q 034553            1 MVLDCDCHNVKALYRRAQVYMEIADLILAELDIKKAIEADPQ   42 (91)
Q Consensus         1 ~al~~~p~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~   42 (91)
                      ++|.+-|.++-+|.+|++++--.|+.++|++|+++++++...
T Consensus        68 qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~  109 (175)
T KOG4555|consen   68 QALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGD  109 (175)
T ss_pred             HHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCc
Confidence            357788999999999999999999999999999999999644

>TIGR00540 hemY_coli hemY protein

Probab=97.36  E-value=0.00075  Score=47.94  Aligned_cols=71  Identities=10%  Similarity=0.023  Sum_probs=56.0

Q ss_pred             cccccCCCH--HHHHHHHHHHHHhCCHHHHHHHHH--HHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 034553            2 VLDCDCHNV--KALYRRAQVYMEIADLILAELDIK--KAIEADPQNREVKLLQKSLKQLQAESNKRDAKFYANMFAR   74 (91)
Q Consensus         2 al~~~p~~~--ka~~rrg~a~~~lg~~~~A~~~~~--~al~l~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~mf~~   74 (91)
                      +++.+|+++  ..+.-.|.+++..|+|++|.+.|+  .+++.+|++.... .+..+....++..++ ...|++-.+.
T Consensus       325 ~lk~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~-~La~ll~~~g~~~~A-~~~~~~~l~~  399 (409)
T TIGR00540       325 QAKNVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLA-MAADAFDQAGDKAEA-AAMRQDSLGL  399 (409)
T ss_pred             HHHhCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHH-HHHHHHHHcCCHHHH-HHHHHHHHHH
Confidence            467899999  778889999999999999999999  5888889876644 888888888777666 3456654433

This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.

>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]

Probab=97.35  E-value=0.00047  Score=46.52  Aligned_cols=52  Identities=13%  Similarity=0.132  Sum_probs=25.5

Q ss_pred             cccccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Q 034553            2 VLDCDCHNVKALYRRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQKSL   53 (91)
Q Consensus         2 al~~~p~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~~~~~l~~~   53 (91)
                      ||-++|..+..|-.|+.+++++.+++.+..+++++++++|+.....-.++..
T Consensus        36 aI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~   87 (284)
T KOG4642|consen   36 AICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQW   87 (284)
T ss_pred             HHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHH
Confidence            3444555555555555555555555555555555555555544333333333

>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional

Probab=97.34  E-value=0.0018  Score=50.59  Aligned_cols=52  Identities=17%  Similarity=0.085  Sum_probs=46.7

Q ss_pred             cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
Q 034553            6 DCHNVKALYRRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQKSLKQLQ   57 (91)
Q Consensus         6 ~p~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~   57 (91)
                      .|++-.|++.+|.+|-.+|++++|...++++++++|+|+.+.+.+.-.....
T Consensus       112 ~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~  163 (906)
T PRK14720        112 YGENKLALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEE  163 (906)
T ss_pred             hhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh
Confidence            4566689999999999999999999999999999999999988887766666

>PRK10747 putative protoheme IX biogenesis protein; Provisional

Probab=97.31  E-value=0.0014  Score=46.55  Aligned_cols=68  Identities=10%  Similarity=0.068  Sum_probs=55.9

Q ss_pred             ccccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 034553            3 LDCDCHNVKALYRRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQKSLKQLQAESNKRDAKFYANMF   72 (91)
Q Consensus         3 l~~~p~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~mf   72 (91)
                      ++.+|+++..++-.|.+++..+++++|...|+++++++|++.. ...+..+....++..++ ...|++-.
T Consensus       321 lk~~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~~~-~~~La~~~~~~g~~~~A-~~~~~~~l  388 (398)
T PRK10747        321 IKQHGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDAYD-YAWLADALDRLHKPEEA-AAMRRDGL  388 (398)
T ss_pred             HhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHH-HHHHHHHHHHcCCHHHH-HHHHHHHH
Confidence            5678999999999999999999999999999999999999765 34688888888777665 33455433

>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]

Probab=97.26  E-value=0.0024  Score=49.40  Aligned_cols=61  Identities=21%  Similarity=0.166  Sum_probs=41.4

Q ss_pred             cccccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH
Q 034553            2 VLDCDCHNVKALYRRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQKSLKQLQAESNK   62 (91)
Q Consensus         2 al~~~p~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~   62 (91)
                      +|+++|.++.||+-+|.+|..+|+.+.|....-.|-.|+|++.+.+..+......++...+
T Consensus       165 vIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~i~q  225 (895)
T KOG2076|consen  165 VIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLGNINQ  225 (895)
T ss_pred             HHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcccHHH
Confidence            4667777777777777777777777777776666666777776666666666555554444

>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]

Probab=97.26  E-value=0.00038  Score=46.96  Aligned_cols=60  Identities=20%  Similarity=0.108  Sum_probs=49.6

Q ss_pred             CcccccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHC---C-C-CHHHHHHHHHHHHHHHHH
Q 034553            1 MVLDCDCHNVKALYRRAQVYMEIADLILAELDIKKAIEAD---P-Q-NREVKLLQKSLKQLQAES   60 (91)
Q Consensus         1 ~al~~~p~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~---p-~-~~~~~~~l~~~~~~~~~~   60 (91)
                      +||+++|+.++++|-.|++.+....|++|+..+++++.+-   | + -.++...|..++.+....
T Consensus        69 ralql~~N~vk~h~flg~~~l~s~~~~eaI~~Lqra~sl~r~~~~~~~~di~~~L~~ak~~~w~v  133 (284)
T KOG4642|consen   69 RALQLDPNLVKAHYFLGQWLLQSKGYDEAIKVLQRAYSLLREQPFTFGDDIPKALRDAKKKRWEV  133 (284)
T ss_pred             HHHhcChHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhCccch
Confidence            4789999999999999999999999999999999997763   2 2 236888888877765444

>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals

Probab=97.22  E-value=0.0026  Score=43.66  Aligned_cols=60  Identities=15%  Similarity=0.000  Sum_probs=40.6

Q ss_pred             cccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
Q 034553            4 DCDCHNVKALYRRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQKSLKQLQAESNKR   63 (91)
Q Consensus         4 ~~~p~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~   63 (91)
                      ..+|...-++...|.++...|++++|+..++++++++|++..+...+..+....++..+.
T Consensus       108 ~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA  167 (355)
T cd05804         108 PENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFKEG  167 (355)
T ss_pred             cCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHH
Confidence            345666666666777777777777777777777777777766666666666665555554

A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.

>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A

Probab=97.21  E-value=0.00041  Score=38.65  Aligned_cols=34  Identities=24%  Similarity=0.205  Sum_probs=29.5

Q ss_pred             ccccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHH
Q 034553            3 LDCDCHNVKALYRRAQVYMEIADLILAELDIKKA   36 (91)
Q Consensus         3 l~~~p~~~ka~~rrg~a~~~lg~~~~A~~~~~~a   36 (91)
                      ++.+|.++..++-.|.+++.+|+|++|+..|+++
T Consensus        51 ~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~l~~~   84 (84)
T PF12895_consen   51 LKLDPSNPDIHYLLARCLLKLGKYEEAIKALEKA   84 (84)
T ss_dssp             HTHHHCHHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred             hCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHhcC
Confidence            3567888899999999999999999999999875

>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]

Probab=97.21  E-value=0.0014  Score=49.19  Aligned_cols=61  Identities=10%  Similarity=-0.098  Sum_probs=55.2

Q ss_pred             cccccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH
Q 034553            2 VLDCDCHNVKALYRRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQKSLKQLQAESNK   62 (91)
Q Consensus         2 al~~~p~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~   62 (91)
                      +++.|+.+.-+|.-.|..+-.-.+|++|++.|+.||.++|+|..+...+..++..+....-
T Consensus        67 glr~d~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~QmRd~~~  127 (700)
T KOG1156|consen   67 GLRNDLKSHVCWHVLGLLQRSDKKYDEAIKCYRNALKIEKDNLQILRDLSLLQIQMRDYEG  127 (700)
T ss_pred             HhccCcccchhHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhh
Confidence            4667888888999999999999999999999999999999999999999999988877654

>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins

Probab=97.20  E-value=0.0037  Score=40.39  Aligned_cols=57  Identities=12%  Similarity=0.077  Sum_probs=44.2

Q ss_pred             ccccCCCHHHHHHHHHHHHHhCC----------HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH
Q 034553            3 LDCDCHNVKALYRRAQVYMEIAD----------LILAELDIKKAIEADPQNREVKLLQKSLKQLQAE   59 (91)
Q Consensus         3 l~~~p~~~ka~~rrg~a~~~lg~----------~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~   59 (91)
                      ...||.+++++++=|.|+..|.+          +++|+.-|+.||.|+|+..++.-.+..+......
T Consensus        18 y~~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~   84 (186)
T PF06552_consen   18 YAKNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSLAF   84 (186)
T ss_dssp             HHH-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHH
T ss_pred             HHhCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHh
Confidence            46799999999999999988854          5789999999999999998887777777666654

Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.

>PRK15331 chaperone protein SicA; Provisional

Probab=97.19  E-value=0.0034  Score=39.94  Aligned_cols=68  Identities=21%  Similarity=0.126  Sum_probs=57.3

Q ss_pred             cccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 034553            4 DCDCHNVKALYRRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQKSLKQLQAESNKRDAKFYANMF   72 (91)
Q Consensus         4 ~~~p~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~mf   72 (91)
                      .+.++-..+.|..|.-++..|++++|...|+-...++|.|......|..+.+..+++.++.. .|.-.+
T Consensus        31 gis~~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~-~Y~~A~   98 (165)
T PRK15331         31 GIPQDMMDGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACD-LYAVAF   98 (165)
T ss_pred             CCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHH-HHHHHH
Confidence            45566778899999999999999999999999999999999999999999999999988743 444333

>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]

Probab=97.18  E-value=0.0012  Score=50.30  Aligned_cols=61  Identities=15%  Similarity=0.054  Sum_probs=52.0

Q ss_pred             cccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
Q 034553            4 DCDCHNVKALYRRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQKSLKQLQAESNKRD   64 (91)
Q Consensus         4 ~~~p~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~   64 (91)
                      .++|-.+-.||-+|..+...|.+++|.+.|..|+.+||++..+...+..+....+...-++
T Consensus       678 ~~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~hv~s~~Ala~~lle~G~~~la~  738 (799)
T KOG4162|consen  678 KIDPLSASVYYLRGLLLEVKGQLEEAKEAFLVALALDPDHVPSMTALAELLLELGSPRLAE  738 (799)
T ss_pred             hcchhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCcchHH
Confidence            4678888899999999999999999999999999999999999999988888887554443

>PRK14574 hmsH outer membrane protein; Provisional

Probab=97.15  E-value=0.0022  Score=49.71  Aligned_cols=34  Identities=18%  Similarity=0.105  Sum_probs=17.7

Q ss_pred             HHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHH
Q 034553           17 AQVYMEIADLILAELDIKKAIEADPQNREVKLLQ   50 (91)
Q Consensus        17 g~a~~~lg~~~~A~~~~~~al~l~p~~~~~~~~l   50 (91)
                      |.++..+|+|+.|++.|+++++++|+|+++...+
T Consensus       109 A~ly~~~gdyd~Aiely~kaL~~dP~n~~~l~gL  142 (822)
T PRK14574        109 ARAYRNEKRWDQALALWQSSLKKDPTNPDLISGM  142 (822)
T ss_pred             HHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHH
Confidence            4455555555555555555555555555444443

>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]

Probab=97.14  E-value=0.0017  Score=51.01  Aligned_cols=76  Identities=20%  Similarity=0.046  Sum_probs=61.3

Q ss_pred             CcccccCCCHHHHHHHHHHHHHhCC-HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH--HHHHHhhhccc
Q 034553            1 MVLDCDCHNVKALYRRAQVYMEIAD-LILAELDIKKAIEADPQNREVKLLQKSLKQLQAESNKRDA--KFYANMFARVT   76 (91)
Q Consensus         1 ~al~~~p~~~ka~~rrg~a~~~lg~-~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~~--~~~~~mf~~~~   76 (91)
                      ++|+.||+|.-|++-.|.++..++. .++|..+|..|.+++|+|.-+++.|..+..+.......++  ..|++.+....
T Consensus        27 kvLk~dpdNYnA~vFLGvAl~sl~q~le~A~ehYv~AaKldpdnlLAWkGL~nLye~~~dIl~ld~~~~~yq~~~l~le  105 (1238)
T KOG1127|consen   27 KVLKEDPDNYNAQVFLGVALWSLGQDLEKAAEHYVLAAKLDPDNLLAWKGLGNLYERYNDILDLDRAAKCYQRAVLILE  105 (1238)
T ss_pred             HHHhcCCCcchhhhHHHHHHHhccCCHHHHHHHHHHHHhcChhhhHHHHHHHHHHHccchhhhhhHhHHHHHHHHHhhh
Confidence            4789999999999999999999998 9999999999999999999999999888877433333222  24555554443

>PF13431 TPR_17: Tetratricopeptide repeat

Probab=97.14  E-value=0.00056  Score=32.24  Aligned_cols=31  Identities=32%  Similarity=0.276  Sum_probs=26.9

Q ss_pred             HHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
Q 034553           33 IKKAIEADPQNREVKLLQKSLKQLQAESNKR   63 (91)
Q Consensus        33 ~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~   63 (91)
                      |+++++++|+|..+...+..+-...++..++
T Consensus         2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A   32 (34)
T PF13431_consen    2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEA   32 (34)
T ss_pred             hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhh
Confidence            7899999999999999999998877766554

>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=97.11  E-value=0.0011  Score=45.43  Aligned_cols=55  Identities=16%  Similarity=0.058  Sum_probs=45.3

Q ss_pred             cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH
Q 034553            6 DCHNVKALYRRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQKSLKQLQAES   60 (91)
Q Consensus         6 ~p~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~   60 (91)
                      .|.++..+...|.+++.+|+|++|...+..++..+|+++++...+..+....+..
T Consensus       197 ~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~  251 (290)
T PF04733_consen  197 FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKP  251 (290)
T ss_dssp             S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-T
T ss_pred             cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCC
Confidence            4678899999999999999999999999999999999999888888777776665

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.

>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]

Probab=97.09  E-value=0.0022  Score=45.63  Aligned_cols=61  Identities=18%  Similarity=0.120  Sum_probs=44.8

Q ss_pred             cccccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH
Q 034553            2 VLDCDCHNVKALYRRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQKSLKQLQAESNK   62 (91)
Q Consensus         2 al~~~p~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~   62 (91)
                      +|.++|.|+-.+.+||.||+++..|..|..||+.|+.||-....+......++..++...+
T Consensus       123 ~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg~~~E  183 (536)
T KOG4648|consen  123 AIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLGNNME  183 (536)
T ss_pred             hhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHhhHHH
Confidence            5778888888899999999999999999999999999886655444444444444444333

>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]

Probab=97.09  E-value=0.00047  Score=46.38  Aligned_cols=44  Identities=14%  Similarity=0.209  Sum_probs=41.6

Q ss_pred             CcccccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCH
Q 034553            1 MVLDCDCHNVKALYRRAQVYMEIADLILAELDIKKAIEADPQNR   44 (91)
Q Consensus         1 ~al~~~p~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~   44 (91)
                      +++++-|.+..+|||.|....+.|+++.|...|++.++++|.+.
T Consensus        20 qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D~   63 (287)
T COG4976          20 QALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPEDH   63 (287)
T ss_pred             HHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCcccc
Confidence            47889999999999999999999999999999999999999875

>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.09  E-value=0.005  Score=41.89  Aligned_cols=69  Identities=10%  Similarity=0.073  Sum_probs=52.7

Q ss_pred             CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCH---HHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCC
Q 034553            9 NVKALYRRAQVYMEIADLILAELDIKKAIEADPQNR---EVKLLQKSLKQLQAESNKRDAKFYANMFARVTKD   78 (91)
Q Consensus         9 ~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~---~~~~~l~~~~~~~~~~~~~~~~~~~~mf~~~~~~   78 (91)
                      -+.|+|++|.+++.+|+|++|...|..+.+-.|.++   +..-.|..+...++...++ ...++.+.++.++-
T Consensus       177 ~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~l~~~d~A-~atl~qv~k~YP~t  248 (262)
T COG1729         177 TPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGRLGNTDEA-CATLQQVIKRYPGT  248 (262)
T ss_pred             cchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhcCHHHH-HHHHHHHHHHCCCC
Confidence            467899999999999999999999999999888765   5666666666666665554 34566666666554

>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala

Probab=97.07  E-value=0.0023  Score=47.28  Aligned_cols=71  Identities=17%  Similarity=0.170  Sum_probs=47.8

Q ss_pred             cccccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 034553            2 VLDCDCHNVKALYRRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQKSLKQLQAESNKRDAKFYANMFAR   74 (91)
Q Consensus         2 al~~~p~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~mf~~   74 (91)
                      ||++.|..++-|+.+|.++-+.|++.+|...++.|..+|+.|.-+...-.+..-+.+...+++.  .-++|.+
T Consensus       220 aI~htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~LRa~~~e~A~~--~~~~Ftr  290 (517)
T PF12569_consen  220 AIEHTPTLVELYMTKARILKHAGDLKEAAEAMDEARELDLADRYINSKCAKYLLRAGRIEEAEK--TASLFTR  290 (517)
T ss_pred             HHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhhHHHHHHHHHHHHHCCCHHHHHH--HHHhhcC
Confidence            6778888888888888888888888888888888888888776555444444333344444322  2344544

N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].

>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]

Probab=97.07  E-value=0.00028  Score=51.14  Aligned_cols=44  Identities=25%  Similarity=0.181  Sum_probs=41.7

Q ss_pred             CcccccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCH
Q 034553            1 MVLDCDCHNVKALYRRAQVYMEIADLILAELDIKKAIEADPQNR   44 (91)
Q Consensus         1 ~al~~~p~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~   44 (91)
                      +||+++|+++.-+-.|+++++..++|-.|+.|+.+|++++|...
T Consensus        29 KaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~   72 (476)
T KOG0376|consen   29 KAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYI   72 (476)
T ss_pred             HHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhh
Confidence            47999999999999999999999999999999999999999864

>PRK11906 transcriptional regulator; Provisional

Probab=97.04  E-value=0.00092  Score=48.50  Aligned_cols=44  Identities=20%  Similarity=0.225  Sum_probs=41.3

Q ss_pred             CcccccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCH
Q 034553            1 MVLDCDCHNVKALYRRAQVYMEIADLILAELDIKKAIEADPQNR   44 (91)
Q Consensus         1 ~al~~~p~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~   44 (91)
                      +|+.++|+++.+||.+|.++...|+.++|+..++++++++|.-.
T Consensus       363 rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~  406 (458)
T PRK11906        363 QAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRR  406 (458)
T ss_pred             HHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhh
Confidence            47889999999999999999999999999999999999999754

>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=97.03  E-value=0.0017  Score=31.52  Aligned_cols=29  Identities=21%  Similarity=0.158  Sum_probs=27.1

Q ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Q 034553           11 KALYRRAQVYMEIADLILAELDIKKAIEA   39 (91)
Q Consensus        11 ka~~rrg~a~~~lg~~~~A~~~~~~al~l   39 (91)
                      +.|.++|-+-+..++|+.|+.||+++|++
T Consensus         2 dv~~~Lgeisle~e~f~qA~~D~~~aL~i   30 (38)
T PF10516_consen    2 DVYDLLGEISLENENFEQAIEDYEKALEI   30 (38)
T ss_pred             cHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence            46889999999999999999999999987

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].

>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]

Probab=97.00  E-value=0.0026  Score=44.66  Aligned_cols=73  Identities=16%  Similarity=0.136  Sum_probs=60.0

Q ss_pred             CcccccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 034553            1 MVLDCDCHNVKALYRRAQVYMEIADLILAELDIKKAIEADPQNR-EVKLLQKSLKQLQAESNKRDAKFYANMFAR   74 (91)
Q Consensus         1 ~al~~~p~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~mf~~   74 (91)
                      +|++-||.++.|=.-+|.+.+..|+|+.|++.++++++-||+.- ++...|..+...++...+.. ...+++...
T Consensus       205 kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~-~fL~~~~~~  278 (389)
T COG2956         205 KALQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGL-NFLRRAMET  278 (389)
T ss_pred             HHHhhCccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHH-HHHHHHHHc
Confidence            46788999999999999999999999999999999999999864 78888888888887766642 344444433

>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production

Probab=96.99  E-value=0.013  Score=35.55  Aligned_cols=57  Identities=23%  Similarity=0.170  Sum_probs=46.9

Q ss_pred             CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 034553            9 NVKALYRRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQKSLKQLQAESNKRDA   65 (91)
Q Consensus         9 ~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~~   65 (91)
                      ...++.+.+..+...|++++|+..+++++.++|-+..+...+-++....+....+..
T Consensus        61 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~  117 (146)
T PF03704_consen   61 YLDALERLAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALR  117 (146)
T ss_dssp             HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHH
T ss_pred             HHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHH
Confidence            456777888899999999999999999999999999999998888888888776643

It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.

>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]

Probab=96.93  E-value=0.0025  Score=44.80  Aligned_cols=60  Identities=18%  Similarity=0.136  Sum_probs=46.2

Q ss_pred             cccccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH
Q 034553            2 VLDCDCHNVKALYRRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQKSLKQLQAESN   61 (91)
Q Consensus         2 al~~~p~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~   61 (91)
                      |+.++|+|+.++.+.|+....-.+.-+|-..|-+||.++|.|.++.....+.........
T Consensus       142 AlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseALvnR~RT~plV~~iD  201 (472)
T KOG3824|consen  142 ALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEALVNRARTTPLVSAID  201 (472)
T ss_pred             HHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHHHhhhhccchHHHHHH
Confidence            567888888888888888888888888888888888888888877776665555444443

>PRK10803 tol-pal system protein YbgF; Provisional

Probab=96.92  E-value=0.006  Score=41.40  Aligned_cols=47  Identities=19%  Similarity=0.224  Sum_probs=41.0

Q ss_pred             CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Q 034553            7 CHNVKALYRRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQKSL   53 (91)
Q Consensus         7 p~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~~~~~l~~~   53 (91)
                      |..+.+++..|.++..+|++++|+..|+++++..|++..+.....++
T Consensus       214 ~~~~dAl~klg~~~~~~g~~~~A~~~~~~vi~~yP~s~~a~~A~~rL  260 (263)
T PRK10803        214 PKAADAMFKVGVIMQDKGDTAKAKAVYQQVIKKYPGTDGAKQAQKRL  260 (263)
T ss_pred             cchhHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHHHHH
Confidence            34688999999999999999999999999999999988766655554

>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]

Probab=96.91  E-value=0.0017  Score=43.57  Aligned_cols=43  Identities=23%  Similarity=0.164  Sum_probs=31.6

Q ss_pred             cccccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCH
Q 034553            2 VLDCDCHNVKALYRRAQVYMEIADLILAELDIKKAIEADPQNR   44 (91)
Q Consensus         2 al~~~p~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~   44 (91)
                      ++++||.+--|+.+||.+++--|+|.-|.+++.+-..-||+|+
T Consensus       125 ~~ELDp~y~Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ~D~~DP  167 (297)
T COG4785         125 VLELDPTYNYAHLNRGIALYYGGRYKLAQDDLLAFYQDDPNDP  167 (297)
T ss_pred             HhccCCcchHHHhccceeeeecCchHhhHHHHHHHHhcCCCCh
Confidence            4567777777777777777777777777777777777777765

>KOG2003 consensus TPR repeat-containing protein [General function prediction only]

Probab=96.90  E-value=0.0045  Score=45.60  Aligned_cols=62  Identities=18%  Similarity=0.088  Sum_probs=53.3

Q ss_pred             cccccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
Q 034553            2 VLDCDCHNVKALYRRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQKSLKQLQAESNKR   63 (91)
Q Consensus         2 al~~~p~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~   63 (91)
                      ||.-|.....|+|..|..+..+|++++|++.|-+...+--++.++...+..+...+....++
T Consensus       516 al~ndasc~ealfniglt~e~~~~ldeald~f~klh~il~nn~evl~qianiye~led~aqa  577 (840)
T KOG2003|consen  516 ALNNDASCTEALFNIGLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDPAQA  577 (840)
T ss_pred             HHcCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHHHH
Confidence            46667788999999999999999999999999998888888889888888888888776654

>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=96.87  E-value=0.00027  Score=49.57  Aligned_cols=58  Identities=12%  Similarity=0.008  Sum_probs=43.7

Q ss_pred             cccccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH
Q 034553            2 VLDCDCHNVKALYRRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQKSLKQLQAES   60 (91)
Q Consensus         2 al~~~p~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~   60 (91)
                      ||+++|+..+.|-.||.++..+|++++|..++..+++++-+ .++..++..+....+..
T Consensus       174 A~ein~Dsa~~ykfrg~A~rllg~~e~aa~dl~~a~kld~d-E~~~a~lKeV~p~a~ki  231 (377)
T KOG1308|consen  174 AIEINPDSAKGYKFRGYAERLLGNWEEAAHDLALACKLDYD-EANSATLKEVFPNAGKI  231 (377)
T ss_pred             hhccCcccccccchhhHHHHHhhchHHHHHHHHHHHhcccc-HHHHHHHHHhccchhhh
Confidence            67888999999999999999999999999999998888743 44555555555544433

>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=96.87  E-value=0.0022  Score=45.20  Aligned_cols=60  Identities=17%  Similarity=0.147  Sum_probs=49.4

Q ss_pred             CcccccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH
Q 034553            1 MVLDCDCHNVKALYRRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQKSLKQLQAES   60 (91)
Q Consensus         1 ~al~~~p~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~   60 (91)
                      .+|.++|.+..-|-.||.+++.+.....|+.||..+++++|+...-.......+..++..
T Consensus       139 ~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~  198 (377)
T KOG1308|consen  139 SAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNW  198 (377)
T ss_pred             cccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhch
Confidence            479999999999999999999999999999999999999998765444444444444443

>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals

Probab=96.86  E-value=0.0025  Score=43.69  Aligned_cols=62  Identities=6%  Similarity=-0.132  Sum_probs=48.6

Q ss_pred             cccccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHH----HHHHHHHHHHHHHHHHH
Q 034553            2 VLDCDCHNVKALYRRAQVYMEIADLILAELDIKKAIEADPQNREV----KLLQKSLKQLQAESNKR   63 (91)
Q Consensus         2 al~~~p~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~~----~~~l~~~~~~~~~~~~~   63 (91)
                      +++++|+++.++...|.+++..|++++|+..+++++.+.|.+...    ...+..+....++..+.
T Consensus       140 al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A  205 (355)
T cd05804         140 ALELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAA  205 (355)
T ss_pred             HHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHH
Confidence            578899999999999999999999999999999999998854322    22455555555555554

A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.

>PRK10941 hypothetical protein; Provisional

Probab=96.86  E-value=0.0052  Score=41.93  Aligned_cols=48  Identities=17%  Similarity=0.253  Sum_probs=41.8

Q ss_pred             cccccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHH
Q 034553            2 VLDCDCHNVKALYRRAQVYMEIADLILAELDIKKAIEADPQNREVKLL   49 (91)
Q Consensus         2 al~~~p~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~~~~~   49 (91)
                      .+.++|+++.-+--||.++.++|-+..|+.|++.-++..|+++.+...
T Consensus       207 ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~i  254 (269)
T PRK10941        207 LLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEMI  254 (269)
T ss_pred             HHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHHH
Confidence            467899999888889999999999999999999999999998754433

>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]

Probab=96.84  E-value=0.0019  Score=43.37  Aligned_cols=44  Identities=11%  Similarity=0.039  Sum_probs=37.6

Q ss_pred             CcccccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCH
Q 034553            1 MVLDCDCHNVKALYRRAQVYMEIADLILAELDIKKAIEADPQNR   44 (91)
Q Consensus         1 ~al~~~p~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~   44 (91)
                      ++|.+.|.-+.++...|.-+..-|+|+.|.+.|+.++++||.+.
T Consensus        90 QaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~  133 (297)
T COG4785          90 QALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYN  133 (297)
T ss_pred             hhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcch
Confidence            36778888888888888888888899999999999999988764

>PF12688 TPR_5: Tetratrico peptide repeat

Probab=96.84  E-value=0.011  Score=35.68  Aligned_cols=63  Identities=14%  Similarity=0.035  Sum_probs=35.6

Q ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCH---HHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 034553           11 KALYRRAQVYMEIADLILAELDIKKAIEADPQNR---EVKLLQKSLKQLQAESNKRDAKFYANMFAR   74 (91)
Q Consensus        11 ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~---~~~~~l~~~~~~~~~~~~~~~~~~~~mf~~   74 (91)
                      +++|.+|-++-.+|+.++|+..|+++++..+...   .+.-.+......+++..+... .++.....
T Consensus         2 ~~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~-~L~~~~~~   67 (120)
T PF12688_consen    2 RALYELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALA-LLEEALEE   67 (120)
T ss_pred             chHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHH-HHHHHHHH
Confidence            4566677777777777777777777766544332   344445555555555555432 33444433

>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones []

Probab=96.81  E-value=0.0085  Score=28.68  Aligned_cols=34  Identities=18%  Similarity=-0.048  Sum_probs=27.8

Q ss_pred             HHHHHHHHHHHHHhCCHHHHHHH--HHHHHHHCCCC
Q 034553           10 VKALYRRAQVYMEIADLILAELD--IKKAIEADPQN   43 (91)
Q Consensus        10 ~ka~~rrg~a~~~lg~~~~A~~~--~~~al~l~p~~   43 (91)
                      ++.++..|..+...|++++|+..  |.-+..++|.|
T Consensus         1 ~e~~y~~a~~~y~~~ky~~A~~~~~y~~l~~ld~~n   36 (36)
T PF07720_consen    1 PEYLYGLAYNFYQKGKYDEAIHFFQYAFLCALDKYN   36 (36)
T ss_dssp             HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHTTT-
T ss_pred             CcHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcccC
Confidence            35788889999999999999999  55888898875

; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.

>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A

Probab=96.79  E-value=0.017  Score=37.38  Aligned_cols=69  Identities=17%  Similarity=0.172  Sum_probs=44.2

Q ss_pred             CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCH---HHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCC
Q 034553            9 NVKALYRRAQVYMEIADLILAELDIKKAIEADPQNR---EVKLLQKSLKQLQAESNKRDAKFYANMFARVTKD   78 (91)
Q Consensus         9 ~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~---~~~~~l~~~~~~~~~~~~~~~~~~~~mf~~~~~~   78 (91)
                      .++++|..|...+..|+|++|+..|+.+....|...   .+.-.+..+.-..+++..+. ..+.++....+..
T Consensus         4 ~~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~-~~~~~fi~~yP~~   75 (203)
T PF13525_consen    4 TAEALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAI-AAYERFIKLYPNS   75 (203)
T ss_dssp             -HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHH-HHHHHHHHH-TT-
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHH-HHHHHHHHHCCCC
Confidence            467888888888888888888888888888877754   45555555555556665552 3466666665543

>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A

Probab=96.79  E-value=0.0059  Score=28.98  Aligned_cols=29  Identities=24%  Similarity=0.132  Sum_probs=26.0

Q ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Q 034553           11 KALYRRAQVYMEIADLILAELDIKKAIEA   39 (91)
Q Consensus        11 ka~~rrg~a~~~lg~~~~A~~~~~~al~l   39 (91)
                      .++...|.++..+|++++|+..+++++.+
T Consensus         3 ~~~~~la~~~~~~g~~~~A~~~~~~al~~   31 (42)
T PF13374_consen    3 SALNNLANAYRAQGRYEEALELLEEALEI   31 (42)
T ss_dssp             HHHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence            57889999999999999999999999986

>PRK10747 putative protoheme IX biogenesis protein; Provisional

Probab=96.78  E-value=0.013  Score=41.57  Aligned_cols=62  Identities=13%  Similarity=0.087  Sum_probs=47.5

Q ss_pred             cccccCCCHHH-HHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
Q 034553            2 VLDCDCHNVKA-LYRRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQKSLKQLQAESNKR   63 (91)
Q Consensus         2 al~~~p~~~ka-~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~   63 (91)
                      +.+.+|++.-+ ....+..+...|+++.|+..++++++.+|++..+...+..+....++..+.
T Consensus       144 A~~~~~~~~~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a  206 (398)
T PRK10747        144 AAELADNDQLPVEITRVRIQLARNENHAARHGVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSL  206 (398)
T ss_pred             HHhcCCcchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhHHHH
Confidence            34567777533 345588889999999999999999999999988888887777766665543

>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H

Probab=96.78  E-value=0.0014  Score=35.78  Aligned_cols=32  Identities=19%  Similarity=0.219  Sum_probs=29.4

Q ss_pred             CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Q 034553            8 HNVKALYRRAQVYMEIADLILAELDIKKAIEA   39 (91)
Q Consensus         8 ~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l   39 (91)
                      .-+.+++..|.++..+|++++|+..+++++++
T Consensus        44 ~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i   75 (78)
T PF13424_consen   44 DTANTLNNLGECYYRLGDYEEALEYYQKALDI   75 (78)
T ss_dssp             HHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence            34778999999999999999999999999986

...

>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]

Probab=96.76  E-value=0.0065  Score=47.53  Aligned_cols=57  Identities=26%  Similarity=0.290  Sum_probs=39.6

Q ss_pred             cccccCCC-HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
Q 034553            2 VLDCDCHN-VKALYRRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQKSLKQLQA   58 (91)
Q Consensus         2 al~~~p~~-~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~   58 (91)
                      +++.+|++ +-++++.|+.++..|+++.|+..|+++++..|++.+....|..+.....
T Consensus       333 s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iLG~Lya~~~  390 (1018)
T KOG2002|consen  333 SLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKILGCLYAHSA  390 (1018)
T ss_pred             HHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHHHhHHHhhh
Confidence            34556665 6677777777777777777777777777777777777777776666653

>PRK10866 outer membrane biogenesis protein BamD; Provisional

Probab=96.75  E-value=0.003  Score=42.24  Aligned_cols=43  Identities=21%  Similarity=0.167  Sum_probs=31.0

Q ss_pred             ccccCCCHHH---HHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHH
Q 034553            3 LDCDCHNVKA---LYRRAQVYMEIADLILAELDIKKAIEADPQNRE   45 (91)
Q Consensus         3 l~~~p~~~ka---~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~   45 (91)
                      +...|..+-+   .+..|.+++.+++|++|+..+++.+++.|+++.
T Consensus        59 ~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~  104 (243)
T PRK10866         59 DNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPN  104 (243)
T ss_pred             HHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCc
Confidence            3445555444   478888888888888888888888888887653

>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]

Probab=96.74  E-value=0.0054  Score=47.93  Aligned_cols=78  Identities=10%  Similarity=0.127  Sum_probs=60.1

Q ss_pred             CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCchhhhhhh
Q 034553            8 HNVKALYRRAQVYMEIADLILAELDIKKAIEADPQN-REVKLLQKSLKQLQAESNKRDAKFYANMFARVTKDSSVATKVG   86 (91)
Q Consensus         8 ~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~mf~~~~~~~~~~~~~g   86 (91)
                      --+.++|..|.++..+|+|+.|...|..+++.+|++ .-....|..++-...+.... ...+.+++...++..++..-+|
T Consensus       305 ~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s-~~~fEkv~k~~p~~~etm~iLG  383 (1018)
T KOG2002|consen  305 IKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEES-KFCFEKVLKQLPNNYETMKILG  383 (1018)
T ss_pred             HHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHH-HHHHHHHHHhCcchHHHHHHHH
Confidence            346789999999999999999999999999999998 45566666666666666655 3467777777776666655444

>TIGR00540 hemY_coli hemY protein

Probab=96.74  E-value=0.0072  Score=42.97  Aligned_cols=79  Identities=19%  Similarity=0.185  Sum_probs=56.0

Q ss_pred             CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHH----HHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCc--hh
Q 034553            8 HNVKALYRRAQVYMEIADLILAELDIKKAIEADPQNRE----VKLLQKSLKQLQAESNKRDAKFYANMFARVTKDS--SV   81 (91)
Q Consensus         8 ~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~----~~~~l~~~~~~~~~~~~~~~~~~~~mf~~~~~~~--~~   81 (91)
                      +++..++..|..+...|++++|...++++++..|++..    .......+.   .....+......++....+...  .+
T Consensus       261 ~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~---~~~~~~~~~~~e~~lk~~p~~~~~~l  337 (409)
T TIGR00540       261 HNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLK---PEDNEKLEKLIEKQAKNVDDKPKCCI  337 (409)
T ss_pred             CCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcC---CCChHHHHHHHHHHHHhCCCChhHHH
Confidence            68999999999999999999999999999999999874    222222222   1111222345667777777776  66


Q ss_pred             hhhhhhcc
Q 034553           82 ATKVGYFA   89 (91)
Q Consensus        82 ~~~~g~f~   89 (91)
                      ...+||..
T Consensus       338 l~sLg~l~  345 (409)
T TIGR00540       338 NRALGQLL  345 (409)
T ss_pred             HHHHHHHH
Confidence            77778754

This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.

>KOG1129 consensus TPR repeat-containing protein [General function prediction only]

Probab=96.72  E-value=0.0018  Score=45.83  Aligned_cols=79  Identities=16%  Similarity=0.146  Sum_probs=64.9

Q ss_pred             CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCchhhhhhhh
Q 034553            8 HNVKALYRRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQKSLKQLQAESNKRDAKFYANMFARVTKDSSVATKVGY   87 (91)
Q Consensus         8 ~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~mf~~~~~~~~~~~~~g~   87 (91)
                      .-.+.||+.|.+....||+.-|...|+-+|.-||++.++.+.|..+..+.+...++ +..+...=+..+.+.+++.|++.
T Consensus       393 ~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~A-rsll~~A~s~~P~m~E~~~Nl~~  471 (478)
T KOG1129|consen  393 QAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDILGA-RSLLNAAKSVMPDMAEVTTNLQF  471 (478)
T ss_pred             hhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCchHHH-HHHHHHhhhhCccccccccceeE
Confidence            45678999999999999999999999999999999999999999999888777665 44555555556666777776653

>PRK14574 hmsH outer membrane protein; Provisional

Probab=96.72  E-value=0.014  Score=45.38  Aligned_cols=70  Identities=11%  Similarity=0.107  Sum_probs=49.4

Q ss_pred             cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccc
Q 034553            6 DCHNVKALYRRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQKSLKQLQAESNKRDAKFYANMFARVT   76 (91)
Q Consensus         6 ~p~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~mf~~~~   76 (91)
                      ||++..+..-++.++...|++.+|.+.+++.+...|.|..++..+..+....+...+++. .++......+
T Consensus       412 n~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~aP~n~~l~~~~A~v~~~Rg~p~~A~~-~~k~a~~l~P  481 (822)
T PRK14574        412 NDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTAPANQNLRIALASIYLARDLPRKAEQ-ELKAVESLAP  481 (822)
T ss_pred             CccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHH-HHHHHhhhCC
Confidence            567777777777777777777777777777777777777777777777777777666643 3454444433

>PRK15331 chaperone protein SicA; Provisional

Probab=96.69  E-value=0.0054  Score=39.04  Aligned_cols=41  Identities=15%  Similarity=-0.143  Sum_probs=33.7

Q ss_pred             ccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHH
Q 034553            5 CDCHNVKALYRRAQVYMEIADLILAELDIKKAIEADPQNRE   45 (91)
Q Consensus         5 ~~p~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~   45 (91)
                      +||.|++-|+.+|.++..+++|+.|+..|-.+..++++|+.
T Consensus        66 ~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~  106 (165)
T PRK15331         66 YDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYR  106 (165)
T ss_pred             hCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCC
Confidence            57888888888888888888888888888888888777653

>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi

Probab=96.68  E-value=0.007  Score=43.40  Aligned_cols=64  Identities=17%  Similarity=0.046  Sum_probs=58.3

Q ss_pred             cccccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 034553            2 VLDCDCHNVKALYRRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQKSLKQLQAESNKRDA   65 (91)
Q Consensus         2 al~~~p~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~~   65 (91)
                      +|..+|.+...+.-.+..++..++++.|+...+++.++.|++...+..|..+...+++.+.+-.
T Consensus       226 aL~~~p~d~~LL~~Qa~fLl~k~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALl  289 (395)
T PF09295_consen  226 ALKENPQDSELLNLQAEFLLSKKKYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALL  289 (395)
T ss_pred             HHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHH
Confidence            4667899999999999999999999999999999999999999999999999999999888743

They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].

>PRK10866 outer membrane biogenesis protein BamD; Provisional

Probab=96.65  E-value=0.032  Score=37.37  Aligned_cols=70  Identities=10%  Similarity=-0.046  Sum_probs=55.1

Q ss_pred             CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHH---HHHHHHHHHHHHHHHHHHHHHHHhhhcccCC
Q 034553            8 HNVKALYRRAQVYMEIADLILAELDIKKAIEADPQNREVK---LLQKSLKQLQAESNKRDAKFYANMFARVTKD   78 (91)
Q Consensus         8 ~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~~~---~~l~~~~~~~~~~~~~~~~~~~~mf~~~~~~   78 (91)
                      ..+..+|..|...+..|+|++|+..|+.++...|..+.+.   -.+..+.-..+++.++. ..++++....+..
T Consensus        30 ~~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~-~~~e~fi~~~P~~  102 (243)
T PRK10866         30 NPPSEIYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQ-AAIDRFIRLNPTH  102 (243)
T ss_pred             CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHH-HHHHHHHHhCcCC
Confidence            4688899999999999999999999999999999987544   55566666667776653 4567777776654

>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]

Probab=96.64  E-value=0.005  Score=48.52  Aligned_cols=62  Identities=13%  Similarity=0.053  Sum_probs=52.7

Q ss_pred             cccccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
Q 034553            2 VLDCDCHNVKALYRRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQKSLKQLQAESNKR   63 (91)
Q Consensus         2 al~~~p~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~   63 (91)
                      |++.+|.+..+|...|.+|...|.|..|++.|.+|-.++|.+.-.+--...++..++++++.
T Consensus       588 ALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~y~~fk~A~~ecd~GkYkea  649 (1238)
T KOG1127|consen  588 ALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSKYGRFKEAVMECDNGKYKEA  649 (1238)
T ss_pred             HhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhHHHHHHHHHHHHHhhhHHHH
Confidence            68899999999999999999999999999999999999999876655555666666666553

>PF13512 TPR_18: Tetratricopeptide repeat

Probab=96.50  E-value=0.03  Score=34.85  Aligned_cols=39  Identities=18%  Similarity=0.093  Sum_probs=33.9

Q ss_pred             CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHH
Q 034553            7 CHNVKALYRRAQVYMEIADLILAELDIKKAIEADPQNRE   45 (91)
Q Consensus         7 p~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~   45 (91)
                      |--..|.+.+|-+++..++|++|+..+++.++|+|+++.
T Consensus        44 ~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~   82 (142)
T PF13512_consen   44 EYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPN   82 (142)
T ss_pred             cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCC
Confidence            345678899999999999999999999999999998763

>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional

Probab=96.50  E-value=0.0065  Score=47.56  Aligned_cols=42  Identities=10%  Similarity=-0.033  Sum_probs=29.6

Q ss_pred             cccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHH
Q 034553            4 DCDCHNVKALYRRAQVYMEIADLILAELDIKKAIEADPQNRE   45 (91)
Q Consensus         4 ~~~p~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~   45 (91)
                      ..+|.+.+++.+...++...+++++|+..++.+++..|+...
T Consensus        25 ~~~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~   66 (906)
T PRK14720         25 NYSLSKFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSIS   66 (906)
T ss_pred             cCCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCccee
Confidence            456777777777777777777777777777777777766543

>PF12688 TPR_5: Tetratrico peptide repeat

Probab=96.47  E-value=0.016  Score=35.01  Aligned_cols=56  Identities=14%  Similarity=0.106  Sum_probs=43.7

Q ss_pred             CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCC---CHHHHHHHHHHHHHHHHHHHH
Q 034553            8 HNVKALYRRAQVYMEIADLILAELDIKKAIEADPQ---NREVKLLQKSLKQLQAESNKR   63 (91)
Q Consensus         8 ~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~---~~~~~~~l~~~~~~~~~~~~~   63 (91)
                      .-..+++.+|.++..+|++++|+..++.++.-.|+   +..+...+..+-...++.+++
T Consensus        36 ~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~~~gr~~eA   94 (120)
T PF12688_consen   36 DRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALYNLGRPKEA   94 (120)
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHHCCCHHHH
Confidence            34679999999999999999999999999998888   556665555555555555443

>TIGR03504 FimV_Cterm FimV C-terminal domain

Probab=96.43  E-value=0.012  Score=29.41  Aligned_cols=25  Identities=32%  Similarity=0.387  Sum_probs=23.3

Q ss_pred             HHHHHHHHHhCCHHHHHHHHHHHHH
Q 034553           14 YRRAQVYMEIADLILAELDIKKAIE   38 (91)
Q Consensus        14 ~rrg~a~~~lg~~~~A~~~~~~al~   38 (91)
                      +.+|.+|+.+|+++.|...++.++.
T Consensus         3 LdLA~ayie~Gd~e~Ar~lL~evl~   27 (44)
T TIGR03504         3 LDLARAYIEMGDLEGARELLEEVIE   27 (44)
T ss_pred             hHHHHHHHHcCChHHHHHHHHHHHH
Confidence            5689999999999999999999995

This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.

>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A

Probab=96.40  E-value=0.045  Score=35.42  Aligned_cols=38  Identities=18%  Similarity=0.064  Sum_probs=32.2

Q ss_pred             CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCH
Q 034553            7 CHNVKALYRRAQVYMEIADLILAELDIKKAIEADPQNR   44 (91)
Q Consensus         7 p~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~   44 (91)
                      |--.+|.+..|.+++..|+|++|+..+++.++..|+++
T Consensus        39 ~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~   76 (203)
T PF13525_consen   39 PYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSP   76 (203)
T ss_dssp             TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-T
T ss_pred             hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCc
Confidence            34578999999999999999999999999999999976

>PF13512 TPR_18: Tetratricopeptide repeat

Probab=96.35  E-value=0.0062  Score=37.90  Aligned_cols=46  Identities=17%  Similarity=0.161  Sum_probs=38.3

Q ss_pred             ccccCCCHH---HHHHHHHHHHHhCC---------------HHHHHHHHHHHHHHCCCCHHHHH
Q 034553            3 LDCDCHNVK---ALYRRAQVYMEIAD---------------LILAELDIKKAIEADPQNREVKL   48 (91)
Q Consensus         3 l~~~p~~~k---a~~rrg~a~~~lg~---------------~~~A~~~~~~al~l~p~~~~~~~   48 (91)
                      |+++|.+++   |+|++|.+++.+..               ...|..+|+.++..-|++.-+..
T Consensus        74 irLhP~hp~vdYa~Y~~gL~~~~~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~yP~S~ya~d  137 (142)
T PF13512_consen   74 IRLHPTHPNVDYAYYMRGLSYYEQDEGSLQSFFRSDRDPTPARQAFRDFEQLVRRYPNSEYAAD  137 (142)
T ss_pred             HHhCCCCCCccHHHHHHHHHHHHHhhhHHhhhcccccCcHHHHHHHHHHHHHHHHCcCChhHHH
Confidence            577787665   69999999999988               88999999999999998874443

>KOG1310 consensus WD40 repeat protein [General function prediction only]

Probab=96.32  E-value=0.0046  Score=46.05  Aligned_cols=58  Identities=16%  Similarity=-0.001  Sum_probs=46.9

Q ss_pred             cccccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH
Q 034553            2 VLDCDCHNVKALYRRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQKSLKQLQAE   59 (91)
Q Consensus         2 al~~~p~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~   59 (91)
                      ||++||...||||+++.++..++.+.+|++....+....|.+.........+...+..
T Consensus       437 Alrln~s~~kah~~la~aL~el~r~~eal~~~~alq~~~Ptd~a~~~~v~~l~rDi~a  494 (758)
T KOG1310|consen  437 ALRLNPSIQKAHFRLARALNELTRYLEALSCHWALQMSFPTDVARQNFVLCLPRDISA  494 (758)
T ss_pred             hccCChHHHHHHHHHHHHHHHHhhHHHhhhhHHHHhhcCchhhhhhhhhhccccchHH
Confidence            7899999999999999999999999999988887777888777655555444444443

>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function

Probab=96.32  E-value=0.033  Score=33.97  Aligned_cols=59  Identities=17%  Similarity=0.097  Sum_probs=44.2

Q ss_pred             ccCCC---HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCH---HHHHHHHHHHHHHHHHHHH
Q 034553            5 CDCHN---VKALYRRAQVYMEIADLILAELDIKKAIEADPQNR---EVKLLQKSLKQLQAESNKR   63 (91)
Q Consensus         5 ~~p~~---~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~---~~~~~l~~~~~~~~~~~~~   63 (91)
                      -+|+.   ..+.+.+|.+++..|++++|+..|+.++...|++.   .++-.|..+....+.+.++
T Consensus        40 ~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~A  104 (145)
T PF09976_consen   40 DYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDEA  104 (145)
T ss_pred             HCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHH
Confidence            45666   67889999999999999999999999999876653   3444555565555555554

>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala

Probab=96.24  E-value=0.037  Score=41.02  Aligned_cols=48  Identities=17%  Similarity=0.179  Sum_probs=42.4

Q ss_pred             CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Q 034553            7 CHNVKALYRRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQKSLK   54 (91)
Q Consensus         7 p~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~~~~~l~~~~   54 (91)
                      ++....+-.||..++.+|++++|...|...++.+|+|......+..+.
T Consensus        35 ~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPdn~~Yy~~L~~~~   82 (517)
T PF12569_consen   35 LDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPDNYDYYRGLEEAL   82 (517)
T ss_pred             CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHH
Confidence            345667778999999999999999999999999999998888887776

N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].

>KOG3060 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.19  E-value=0.071  Score=36.48  Aligned_cols=59  Identities=17%  Similarity=0.118  Sum_probs=48.9

Q ss_pred             ccccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH
Q 034553            3 LDCDCHNVKALYRRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQKSLKQLQAESN   61 (91)
Q Consensus         3 l~~~p~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~   61 (91)
                      ++.-+++.+||...+..|+..|+|+.|.=.++.++-+.|-++.....+..+.--++...
T Consensus       147 L~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~e  205 (289)
T KOG3060|consen  147 LDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAE  205 (289)
T ss_pred             HHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHH
Confidence            34567889999999999999999999999999999999999888777777766665533

>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]

Probab=96.16  E-value=0.026  Score=39.93  Aligned_cols=37  Identities=19%  Similarity=0.175  Sum_probs=33.7

Q ss_pred             CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHH
Q 034553            9 NVKALYRRAQVYMEIADLILAELDIKKAIEADPQNRE   45 (91)
Q Consensus         9 ~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~   45 (91)
                      |+--|.+||.|.+.+|+|..|+.|+.+|+.++|.+..
T Consensus       118 navLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~K  154 (390)
T KOG0551|consen  118 NAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLK  154 (390)
T ss_pred             HHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhh
Confidence            4556899999999999999999999999999999863

>KOG4555 consensus TPR repeat-containing protein [Function unknown]

Probab=96.12  E-value=0.057  Score=33.78  Aligned_cols=53  Identities=19%  Similarity=0.098  Sum_probs=43.5

Q ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH
Q 034553           10 VKALYRRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQKSLKQLQAESNK   62 (91)
Q Consensus        10 ~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~   62 (91)
                      ++.+=+.|.++...|+.+.|++-|.+++.+-|.++++.+.........+...+
T Consensus        43 S~~LEl~~valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~   95 (175)
T KOG4555|consen   43 SRELELKAIALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEE   95 (175)
T ss_pred             HHHHHHHHHHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHH
Confidence            45677899999999999999999999999999998887777666555544433

>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=96.12  E-value=0.02  Score=41.74  Aligned_cols=44  Identities=14%  Similarity=0.063  Sum_probs=24.1

Q ss_pred             HHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
Q 034553           14 YRRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQKSLKQLQ   57 (91)
Q Consensus        14 ~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~   57 (91)
                      ...|.++...+.+.+|++.|..||.+||+|......++++++..
T Consensus       475 ~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~~~~sl~Gl~~lEK~~  518 (564)
T KOG1174|consen  475 NHLGDIMRAQNEPQKAMEYYYKALRQDPKSKRTLRGLRLLEKSD  518 (564)
T ss_pred             HHHHHHHHHhhhHHHHHHHHHHHHhcCccchHHHHHHHHHHhcc
Confidence            33444444555555555556666666666555555555555444

>KOG2796 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.12  E-value=0.069  Score=37.00  Aligned_cols=76  Identities=16%  Similarity=0.166  Sum_probs=53.9

Q ss_pred             cccccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCH---HHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccC
Q 034553            2 VLDCDCHNVKALYRRAQVYMEIADLILAELDIKKAIEADPQNR---EVKLLQKSLKQLQAESNKRDAKFYANMFARVTK   77 (91)
Q Consensus         2 al~~~p~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~---~~~~~l~~~~~~~~~~~~~~~~~~~~mf~~~~~   77 (91)
                      ++..||.++.+-..+|.+++.+|+..+|++.++.++...|...   .+.-.|..+...--....+.+.....+.....+
T Consensus       278 i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~~~l~es~~~nL~tmyEL~Ys~~~~~k~~l~~~ia~~~~  356 (366)
T KOG2796|consen  278 ILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQDPRHYLHESVLFNLTTMYELEYSRSMQKKQALLEAVAGKEG  356 (366)
T ss_pred             ccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccCCccchhhhHHHHHHHHHHHHhhhhhhHHHHHHHHHhccCC
Confidence            5788999999999999999999999999999999999999754   333344444333322222334445555554444

>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A

Probab=96.05  E-value=0.09  Score=32.65  Aligned_cols=54  Identities=20%  Similarity=0.237  Sum_probs=44.2

Q ss_pred             CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH
Q 034553            9 NVKALYRRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQKSLKQLQAESNK   62 (91)
Q Consensus         9 ~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~   62 (91)
                      -......++...+..|+|.-|....+.++..+|+|.+++.....+-..+....+
T Consensus        69 G~d~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg~~~~  122 (141)
T PF14863_consen   69 GADKVLERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQLGYQSE  122 (141)
T ss_dssp             CHHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH-S
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHhcc
Confidence            356778899999999999999999999999999999999999888888777654

>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=95.99  E-value=0.057  Score=37.13  Aligned_cols=54  Identities=15%  Similarity=0.056  Sum_probs=47.1

Q ss_pred             CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH
Q 034553            7 CHNVKALYRRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQKSLKQLQAES   60 (91)
Q Consensus         7 p~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~   60 (91)
                      |..+.-+...+.+++.+|+|++|...++.+|.-+|++++....+-.+....+..
T Consensus       204 ~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nliv~a~~~Gkd  257 (299)
T KOG3081|consen  204 PPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANLIVLALHLGKD  257 (299)
T ss_pred             CCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCC
Confidence            557788889999999999999999999999999999998888877776666555

>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]

Probab=95.97  E-value=0.011  Score=44.59  Aligned_cols=54  Identities=11%  Similarity=0.145  Sum_probs=46.7

Q ss_pred             cccccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
Q 034553            2 VLDCDCHNVKALYRRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQKSLKQ   55 (91)
Q Consensus         2 al~~~p~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~   55 (91)
                      +|.++..-+-.+|-.|.+++.+.+.+.|++.|+.|++++|++.++.+.|..+.=
T Consensus       668 ~l~~~~sepl~~~~~g~~~l~l~~i~~a~~~~~~a~~~~~~~~~~~~~l~~i~c  721 (886)
T KOG4507|consen  668 ALAINSSEPLTFLSLGNAYLALKNISGALEAFRQALKLTTKCPECENSLKLIRC  721 (886)
T ss_pred             HHhhcccCchHHHhcchhHHHHhhhHHHHHHHHHHHhcCCCChhhHHHHHHHHH
Confidence            455666667788999999999999999999999999999999999888876654

>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]

Probab=95.93  E-value=0.03  Score=38.32  Aligned_cols=76  Identities=9%  Similarity=0.007  Sum_probs=57.4

Q ss_pred             cccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCch
Q 034553            4 DCDCHNVKALYRRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQKSLKQLQAESNKRDAKFYANMFARVTKDSS   80 (91)
Q Consensus         4 ~~~p~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~mf~~~~~~~~   80 (91)
                      +++..+..-+.+.+++++..|+|-++++++..+|..+|.|..+.-...++........+++. -+.+.+...++..+
T Consensus       224 eLdk~~tpLllNy~QC~L~~~e~yevleh~seiL~~~~~nvKA~frRakAhaa~Wn~~eA~~-D~~~vL~ldpslas  299 (329)
T KOG0545|consen  224 ELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEILRHHPGNVKAYFRRAKAHAAVWNEAEAKA-DLQKVLELDPSLAS  299 (329)
T ss_pred             HHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhcCHHHHHH-HHHHHHhcChhhHH
Confidence            34445566788999999999999999999999999999998777766666666666666533 45666666554433

>COG2912 Uncharacterized conserved protein [Function unknown]

Probab=95.87  E-value=0.025  Score=38.61  Aligned_cols=45  Identities=18%  Similarity=0.243  Sum_probs=41.6

Q ss_pred             cccccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHH
Q 034553            2 VLDCDCHNVKALYRRAQVYMEIADLILAELDIKKAIEADPQNREV   46 (91)
Q Consensus         2 al~~~p~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~~   46 (91)
                      .|.++|.++.-+--||.+|.++|-+..|+.|+...++.-|+++.+
T Consensus       207 ~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~P~~~~a  251 (269)
T COG2912         207 LLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEHCPDDPIA  251 (269)
T ss_pred             HHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHhCCCchHH
Confidence            478899999999999999999999999999999999999998754

>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]

Probab=95.82  E-value=0.093  Score=38.51  Aligned_cols=70  Identities=16%  Similarity=0.011  Sum_probs=39.7

Q ss_pred             CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccC
Q 034553            7 CHNVKALYRRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQKSLKQLQAESNKRDAKFYANMFARVTK   77 (91)
Q Consensus         7 p~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~mf~~~~~   77 (91)
                      |...-++|-+++.++..|.+++|...++..++..|+|.-.......+.-..+...++. +.++++....+.
T Consensus       303 ~~~~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~nk~~~A~-e~~~kal~l~P~  372 (484)
T COG4783         303 RGGLAAQYGRALQTYLAGQYDEALKLLQPLIAAQPDNPYYLELAGDILLEANKAKEAI-ERLKKALALDPN  372 (484)
T ss_pred             ccchHHHHHHHHHHHHhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHH-HHHHHHHhcCCC
Confidence            4455566666666666666666666666666666666655555555555555444442 244555544443

>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models

Probab=95.66  E-value=0.02  Score=25.10  Aligned_cols=24  Identities=21%  Similarity=0.094  Sum_probs=21.5

Q ss_pred             HHHHHHHHHHHHhCCHHHHHHHHH
Q 034553           11 KALYRRAQVYMEIADLILAELDIK   34 (91)
Q Consensus        11 ka~~rrg~a~~~lg~~~~A~~~~~   34 (91)
                      .+++.+|.++..+|++++|...++
T Consensus         2 ~a~~~la~~~~~~G~~~eA~~~l~   25 (26)
T PF07721_consen    2 RARLALARALLAQGDPDEAERLLR   25 (26)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHh
Confidence            467889999999999999998875

The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding

>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]

Probab=95.30  E-value=0.11  Score=38.50  Aligned_cols=61  Identities=15%  Similarity=0.057  Sum_probs=51.8

Q ss_pred             cccccCCCHHHHHHHHHHHHHhCC-HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH
Q 034553            2 VLDCDCHNVKALYRRAQVYMEIAD-LILAELDIKKAIEADPQNREVKLLQKSLKQLQAESNK   62 (91)
Q Consensus         2 al~~~p~~~ka~~rrg~a~~~lg~-~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~   62 (91)
                      +|..+|+++.-|.--|.-.+..+. .+.|...|.++|..+|+++.++...-+++-.--....
T Consensus       131 ~l~~Hp~~~dLWI~aA~wefe~n~ni~saRalflrgLR~npdsp~Lw~eyfrmEL~~~~Kl~  192 (568)
T KOG2396|consen  131 MLAKHPNNPDLWIYAAKWEFEINLNIESARALFLRGLRFNPDSPKLWKEYFRMELMYAEKLR  192 (568)
T ss_pred             HHHhCCCCchhHHhhhhhHHhhccchHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHHHH
Confidence            578899999999999999998887 9999999999999999999988887776655444433

>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function

Probab=95.26  E-value=0.084  Score=32.18  Aligned_cols=53  Identities=11%  Similarity=0.046  Sum_probs=39.1

Q ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
Q 034553           10 VKALYRRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQKSLKQLQAESNKR   63 (91)
Q Consensus        10 ~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~   63 (91)
                      ..+.+|+|.+++..|+|++|+..++.+ .-.|-.+.+...+..+....++..++
T Consensus        85 ~~a~l~LA~~~~~~~~~d~Al~~L~~~-~~~~~~~~~~~~~Gdi~~~~g~~~~A  137 (145)
T PF09976_consen   85 PLARLRLARILLQQGQYDEALATLQQI-PDEAFKALAAELLGDIYLAQGDYDEA  137 (145)
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHhc-cCcchHHHHHHHHHHHHHHCCCHHHH
Confidence            568999999999999999999999762 22233345666677777766666655

>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=95.24  E-value=0.078  Score=39.68  Aligned_cols=61  Identities=16%  Similarity=0.063  Sum_probs=53.3

Q ss_pred             ccccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
Q 034553            3 LDCDCHNVKALYRRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQKSLKQLQAESNKR   63 (91)
Q Consensus         3 l~~~p~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~   63 (91)
                      .+..|+.+-.||-.|.-|+.+|.+++|...|.++-.+||....++-..+..-.-.++..++
T Consensus       305 V~~yP~~a~sW~aVg~YYl~i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQA  365 (611)
T KOG1173|consen  305 VDLYPSKALSWFAVGCYYLMIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQA  365 (611)
T ss_pred             HHhCCCCCcchhhHHHHHHHhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHH
Confidence            4678999999999999999999999999999999999999999988888877766666654

>KOG0495 consensus HAT repeat protein [RNA processing and modification]

Probab=95.20  E-value=0.041  Score=42.15  Aligned_cols=59  Identities=14%  Similarity=0.076  Sum_probs=53.8

Q ss_pred             cccccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH
Q 034553            2 VLDCDCHNVKALYRRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQKSLKQLQAES   60 (91)
Q Consensus         2 al~~~p~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~   60 (91)
                      +|+.-|++.|-|.-+|+++..+++.+.|...|..++++-|+...++-.|.+++.+...-
T Consensus       677 ~lk~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~~~  735 (913)
T KOG0495|consen  677 ALKSFPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQL  735 (913)
T ss_pred             HHHhCCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhcch
Confidence            57788999999999999999999999999999999999999999999999888877644

>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi

Probab=95.17  E-value=0.019  Score=41.23  Aligned_cols=42  Identities=14%  Similarity=0.257  Sum_probs=35.6

Q ss_pred             cccccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCC
Q 034553            2 VLDCDCHNVKALYRRAQVYMEIADLILAELDIKKAIEADPQN   43 (91)
Q Consensus         2 al~~~p~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~   43 (91)
                      ++++.|+..++|+.++.+|..+|+|+.|+..++.+--+.+.+
T Consensus       260 av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm~~~~~  301 (395)
T PF09295_consen  260 AVELSPSEFETWYQLAECYIQLGDFENALLALNSCPMLTYKD  301 (395)
T ss_pred             HHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCcCCCCcc
Confidence            567899999999999999999999999998888665544333

They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].

>KOG2003 consensus TPR repeat-containing protein [General function prediction only]

Probab=94.78  E-value=0.15  Score=37.94  Aligned_cols=55  Identities=16%  Similarity=0.151  Sum_probs=48.7

Q ss_pred             CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH
Q 034553            8 HNVKALYRRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQKSLKQLQAESNK   62 (91)
Q Consensus         8 ~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~   62 (91)
                      +++..++..+.+|..+.+...|++.+..+..+-|+++.+...|..+....+...+
T Consensus       556 nn~evl~qianiye~led~aqaie~~~q~~slip~dp~ilskl~dlydqegdksq  610 (840)
T KOG2003|consen  556 NNAEVLVQIANIYELLEDPAQAIELLMQANSLIPNDPAILSKLADLYDQEGDKSQ  610 (840)
T ss_pred             hhHHHHHHHHHHHHHhhCHHHHHHHHHHhcccCCCCHHHHHHHHHHhhcccchhh
Confidence            5789999999999999999999999999999999999999988888766555443

>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]

Probab=94.67  E-value=0.34  Score=34.41  Aligned_cols=68  Identities=15%  Similarity=0.159  Sum_probs=52.0

Q ss_pred             HHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCchh
Q 034553           13 LYRRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQKSLKQLQAESNKRDAKFYANMFARVTKDSSV   81 (91)
Q Consensus        13 ~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~mf~~~~~~~~~   81 (91)
                      -.+.|.-....|+.+.|...|..|+.++|.++++...+......-++.-+++. .|-+.+...++.++.
T Consensus       119 Al~~A~~~~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq-~Y~~ALtisP~nseA  186 (472)
T KOG3824|consen  119 ALKAAGRSRKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQ-CYVKALTISPGNSEA  186 (472)
T ss_pred             HHHHHHHHHhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhh-hhheeeeeCCCchHH
Confidence            44556667889999999999999999999999999999998888777766654 444445544444433

>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]

Probab=94.61  E-value=0.19  Score=39.46  Aligned_cols=84  Identities=7%  Similarity=-0.038  Sum_probs=51.1

Q ss_pred             ccccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCchhh
Q 034553            3 LDCDCHNVKALYRRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQKSLKQLQAESNKRDAKFYANMFARVTKDSSVA   82 (91)
Q Consensus         3 l~~~p~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~mf~~~~~~~~~~   82 (91)
                      ++..|+-.-|....|.++.++|.+++|...++..-.+-|+|......+..+...++...+. -..|.+...+.++   -+
T Consensus        36 lkk~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~-~~~Ye~~~~~~P~---ee  111 (932)
T KOG2053|consen   36 LKKHPNALYAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEA-VHLYERANQKYPS---EE  111 (932)
T ss_pred             HHHCCCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHH-HHHHHHHHhhCCc---HH
Confidence            4456666666667777777777777777555554445555666666666666666665554 2355665555543   45


Q ss_pred             hhhhhccc
Q 034553           83 TKVGYFAC   90 (91)
Q Consensus        83 ~~~g~f~~   90 (91)
                      +-++||-|
T Consensus       112 ll~~lFma  119 (932)
T KOG2053|consen  112 LLYHLFMA  119 (932)
T ss_pred             HHHHHHHH
Confidence            55666654

>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]

Probab=94.50  E-value=0.11  Score=39.47  Aligned_cols=75  Identities=9%  Similarity=-0.014  Sum_probs=66.3

Q ss_pred             cccccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccC
Q 034553            2 VLDCDCHNVKALYRRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQKSLKQLQAESNKRDAKFYANMFARVTK   77 (91)
Q Consensus         2 al~~~p~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~mf~~~~~   77 (91)
                      +|...|.+++.+--+|..+..+|+-++|....+.++..||.+...+..++.+.+.-+++.++-+ -|++.+...+.
T Consensus        33 iL~k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK~Y~eaiK-cy~nAl~~~~d  107 (700)
T KOG1156|consen   33 ILKKFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSDKKYDEAIK-CYRNALKIEKD  107 (700)
T ss_pred             HHHhCCccchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHHHhhhhhHHHHHH-HHHHHHhcCCC
Confidence            4567899999999999999999999999999999999999999999999999999999998754 67777665433

>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]

Probab=94.44  E-value=0.071  Score=40.94  Aligned_cols=70  Identities=14%  Similarity=0.116  Sum_probs=56.8

Q ss_pred             cccccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 034553            2 VLDCDCHNVKALYRRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQKSLKQLQAESNKRDAKFYANMF   72 (91)
Q Consensus         2 al~~~p~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~mf   72 (91)
                      ++.++|++..+|.+.+.+|+.+++-.+|...+++|++.+-.+-.++...-.+...+++..++ ...|.++.
T Consensus       545 cvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~w~iWENymlvsvdvge~eda-~~A~~rll  614 (777)
T KOG1128|consen  545 CVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQHWQIWENYMLVSVDVGEFEDA-IKAYHRLL  614 (777)
T ss_pred             HhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCCCeeeechhhhhhhcccHHHH-HHHHHHHH
Confidence            46789999999999999999999999999999999999877767777666666666666655 33455554

>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function

Probab=94.33  E-value=0.45  Score=33.05  Aligned_cols=76  Identities=13%  Similarity=0.084  Sum_probs=54.3

Q ss_pred             cccccCCCHHHHHHHHHHHHHhCC------------HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 034553            2 VLDCDCHNVKALYRRAQVYMEIAD------------LILAELDIKKAIEADPQNREVKLLQKSLKQLQAESNKRDAKFYA   69 (91)
Q Consensus         2 al~~~p~~~ka~~rrg~a~~~lg~------------~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~   69 (91)
                      .++-+|.++++|.......-.+-.            .+.-+..|++||+.+|++..++..+-++-..+....+ -...++
T Consensus        11 ~v~~~P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~np~~~~L~l~~l~~~~~~~~~~~-l~~~we   89 (321)
T PF08424_consen   11 RVRENPHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHNPDSERLLLGYLEEGEKVWDSEK-LAKKWE   89 (321)
T ss_pred             HHHhCcccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHH-HHHHHH
Confidence            356789999999998877655543            5677889999999999988777776666666653333 344577


Q ss_pred             HhhhcccCC
Q 034553           70 NMFARVTKD   78 (91)
Q Consensus        70 ~mf~~~~~~   78 (91)
                      ++....++.
T Consensus        90 ~~l~~~~~~   98 (321)
T PF08424_consen   90 ELLFKNPGS   98 (321)
T ss_pred             HHHHHCCCC
Confidence            777665553

>KOG1840 consensus Kinesin light chain [Cytoskeleton]

Probab=94.23  E-value=0.15  Score=37.83  Aligned_cols=58  Identities=19%  Similarity=0.093  Sum_probs=40.8

Q ss_pred             cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHC-----CCCHHH---HHHHHHHHHHHHHHHHH
Q 034553            6 DCHNVKALYRRAQVYMEIADLILAELDIKKAIEAD-----PQNREV---KLLQKSLKQLQAESNKR   63 (91)
Q Consensus         6 ~p~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~-----p~~~~~---~~~l~~~~~~~~~~~~~   63 (91)
                      +|.-+-.+.++|.+|+..|+|++|...|++|+++-     .+.+++   ...+..+.....+..++
T Consensus       279 h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea  344 (508)
T KOG1840|consen  279 HPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEA  344 (508)
T ss_pred             CHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHH
Confidence            45566789999999999999999999999999973     233333   33444444444444444

>KOG3060 consensus Uncharacterized conserved protein [Function unknown]

Probab=94.22  E-value=0.59  Score=32.12  Aligned_cols=42  Identities=12%  Similarity=0.047  Sum_probs=24.6

Q ss_pred             CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHH
Q 034553            7 CHNVKALYRRAQVYMEIADLILAELDIKKAIEADPQNREVKL   48 (91)
Q Consensus         7 p~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~~~~   48 (91)
                      |++.+.---.|.-+...|.|++|++.|+..++-||.|..++.
T Consensus        83 p~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~ddpt~~v~~K  124 (289)
T KOG3060|consen   83 PGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDDPTDTVIRK  124 (289)
T ss_pred             CCChhHHHHHHHHHHHhhchhhHHHHHHHHhccCcchhHHHH
Confidence            555555555556666666666666666666666666555444

>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production

Probab=94.17  E-value=0.12  Score=31.25  Aligned_cols=37  Identities=11%  Similarity=-0.127  Sum_probs=32.0

Q ss_pred             cccccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Q 034553            2 VLDCDCHNVKALYRRAQVYMEIADLILAELDIKKAIE   38 (91)
Q Consensus         2 al~~~p~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~   38 (91)
                      ++.+||-+..+|...-.++..+|++.+|+..|++...
T Consensus        88 ~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~  124 (146)
T PF03704_consen   88 ALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRR  124 (146)
T ss_dssp             HHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred             HHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence            5778999999999999999999999999999998754

It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.

>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]

Probab=94.13  E-value=0.28  Score=33.93  Aligned_cols=84  Identities=17%  Similarity=0.183  Sum_probs=67.0

Q ss_pred             cccccCCCHHHHHHHHHHHHH-hCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCch
Q 034553            2 VLDCDCHNVKALYRRAQVYME-IADLILAELDIKKAIEADPQNREVKLLQKSLKQLQAESNKRDAKFYANMFARVTKDSS   80 (91)
Q Consensus         2 al~~~p~~~ka~~rrg~a~~~-lg~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~mf~~~~~~~~   80 (91)
                      +|.++|.|--.|.-|-.++-. ..+..+-+..+....+-+|.|-.++.-.+.+-..++...-.|-...+.|+...++.++
T Consensus        69 ~i~lNpAnYTVW~yRr~iL~~l~~dL~~El~~l~eI~e~npKNYQvWHHRr~ive~l~d~s~rELef~~~~l~~DaKNYH  148 (318)
T KOG0530|consen   69 AIRLNPANYTVWQYRRVILRHLMSDLNKELEYLDEIIEDNPKNYQVWHHRRVIVELLGDPSFRELEFTKLMLDDDAKNYH  148 (318)
T ss_pred             HHHhCcccchHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCccchhHHHHHHHHHHHhcCcccchHHHHHHHHhccccchh
Confidence            578899888887666555544 4577888888999999999999999999999999987665678889999998887777


Q ss_pred             hhhhh
Q 034553           81 VATKV   85 (91)
Q Consensus        81 ~~~~~   85 (91)
                      +=...
T Consensus       149 aWshR  153 (318)
T KOG0530|consen  149 AWSHR  153 (318)
T ss_pred             hhHHH
Confidence            64443

>KOG1129 consensus TPR repeat-containing protein [General function prediction only]

Probab=94.12  E-value=0.63  Score=33.36  Aligned_cols=66  Identities=15%  Similarity=0.159  Sum_probs=50.6

Q ss_pred             CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 034553            9 NVKALYRRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQKSLKQLQAESNKRDAKFYANMFARV   75 (91)
Q Consensus         9 ~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~mf~~~   75 (91)
                      .++.+..++.+|..+..++.|+..|..+++.-|.+...+-.+.++.+.+.++... .+.|+...+..
T Consensus       255 ~~dTfllLskvY~ridQP~~AL~~~~~gld~fP~~VT~l~g~ARi~eam~~~~~a-~~lYk~vlk~~  320 (478)
T KOG1129|consen  255 HPDTFLLLSKVYQRIDQPERALLVIGEGLDSFPFDVTYLLGQARIHEAMEQQEDA-LQLYKLVLKLH  320 (478)
T ss_pred             chhHHHHHHHHHHHhccHHHHHHHHhhhhhcCCchhhhhhhhHHHHHHHHhHHHH-HHHHHHHHhcC
Confidence            5677777888888888888888888888888888888888888888888877765 34567666553

>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=94.09  E-value=0.36  Score=33.00  Aligned_cols=48  Identities=17%  Similarity=0.137  Sum_probs=41.4

Q ss_pred             cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Q 034553            6 DCHNVKALYRRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQKSL   53 (91)
Q Consensus         6 ~p~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~~~~~l~~~   53 (91)
                      .|.-++++|..|.+...+|+-++|...|+.+.+--|+...+......+
T Consensus       211 s~KApdallKlg~~~~~l~~~d~A~atl~qv~k~YP~t~aA~~Ak~~~  258 (262)
T COG1729         211 SPKAPDALLKLGVSLGRLGNTDEACATLQQVIKRYPGTDAAKLAKVAL  258 (262)
T ss_pred             CCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Confidence            355678899999999999999999999999999999988776655444

>COG4105 ComL DNA uptake lipoprotein [General function prediction only]

Probab=94.04  E-value=0.9  Score=30.94  Aligned_cols=69  Identities=9%  Similarity=-0.006  Sum_probs=49.8

Q ss_pred             CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCH---HHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCC
Q 034553            9 NVKALYRRAQVYMEIADLILAELDIKKAIEADPQNR---EVKLLQKSLKQLQAESNKRDAKFYANMFARVTKD   78 (91)
Q Consensus         9 ~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~---~~~~~l~~~~~~~~~~~~~~~~~~~~mf~~~~~~   78 (91)
                      .+.-||..|+..+.-|+|++|+..|+.+..-.|.++   .+.-.+.-+.-+.+++..+. ....++....++.
T Consensus        33 p~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~-~~~drFi~lyP~~  104 (254)
T COG4105          33 PASELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLAL-AYIDRFIRLYPTH  104 (254)
T ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHH-HHHHHHHHhCCCC
Confidence            577899999999999999999999999999988765   44445555555555555553 2455555665543

>PF12862 Apc5: Anaphase-promoting complex subunit 5

Probab=93.25  E-value=0.27  Score=28.04  Aligned_cols=34  Identities=18%  Similarity=0.074  Sum_probs=29.9

Q ss_pred             CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCC
Q 034553            9 NVKALYRRAQVYMEIADLILAELDIKKAIEADPQ   42 (91)
Q Consensus         9 ~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~   42 (91)
                      ..-|+..+|..+...|++++|+..+++++.+...
T Consensus        40 ~~~all~lA~~~~~~G~~~~A~~~l~eAi~~Are   73 (94)
T PF12862_consen   40 LAYALLNLAELHRRFGHYEEALQALEEAIRLARE   73 (94)
T ss_pred             HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Confidence            3567899999999999999999999999998543

>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]

Probab=92.94  E-value=0.71  Score=31.87  Aligned_cols=63  Identities=16%  Similarity=0.152  Sum_probs=49.0

Q ss_pred             CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 034553            8 HNVKALYRRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQKSLKQLQAESNKRDAKFYANM   71 (91)
Q Consensus         8 ~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~m   71 (91)
                      ...+++...+.++...|+++.++.++++.+.++|-+..+...+-......+...... ..|+++
T Consensus       151 ~~~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai-~~y~~l  213 (280)
T COG3629         151 LFIKALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAI-RAYRQL  213 (280)
T ss_pred             HHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHH-HHHHHH
Confidence            457888899999999999999999999999999999888877777666665555442 234444

>KOG3785 consensus Uncharacterized conserved protein [Function unknown]

Probab=92.87  E-value=0.64  Score=33.68  Aligned_cols=55  Identities=13%  Similarity=0.012  Sum_probs=46.1

Q ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 034553           11 KALYRRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQKSLKQLQAESNKRDA   65 (91)
Q Consensus        11 ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~~   65 (91)
                      ..-...|.+++++|+|++|+..|.-+..-+.-+.++...|.-+.--++.+.+++.
T Consensus        58 ~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~eA~~  112 (557)
T KOG3785|consen   58 SLQLWIAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYIEAKS  112 (557)
T ss_pred             HHHHHHHHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHHHHHH
Confidence            3456789999999999999999999988766677888888888888888887654

>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT

Probab=92.86  E-value=0.28  Score=30.10  Aligned_cols=31  Identities=19%  Similarity=0.108  Sum_probs=27.2

Q ss_pred             CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Q 034553            9 NVKALYRRAQVYMEIADLILAELDIKKAIEA   39 (91)
Q Consensus         9 ~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l   39 (91)
                      ++.+-|.||.++..+|..++|+..|+++-+.
T Consensus        99 WIaaVfsra~Al~~~Gr~~eA~~~fr~agEM  129 (144)
T PF12968_consen   99 WIAAVFSRAVALEGLGRKEEALKEFRMAGEM  129 (144)
T ss_dssp             HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCChHHHHHHHHHHHHH
Confidence            5678899999999999999999999998874

The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.

>KOG0495 consensus HAT repeat protein [RNA processing and modification]

Probab=92.72  E-value=0.51  Score=36.51  Aligned_cols=69  Identities=12%  Similarity=0.078  Sum_probs=54.2

Q ss_pred             cccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 034553            4 DCDCHNVKALYRRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQKSLKQLQAESNKRDAKFYANMFAR   74 (91)
Q Consensus         4 ~~~p~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~mf~~   74 (91)
                      +.-..++..+.-.|..+..-..++.|.+.|.++++++|++-+++..+-+.....+...+. + ..-++|..
T Consensus       811 kkce~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~d~GD~wa~fykfel~hG~eed~-k-ev~~~c~~  879 (913)
T KOG0495|consen  811 KKCEHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKDPDNGDAWAWFYKFELRHGTEEDQ-K-EVLKKCET  879 (913)
T ss_pred             HhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccCCccchHHHHHHHHHHHhCCHHHH-H-HHHHHHhc
Confidence            334467778888899999999999999999999999999999999998888877754432 2 23444544

>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins

Probab=92.13  E-value=0.83  Score=31.08  Aligned_cols=73  Identities=8%  Similarity=-0.013  Sum_probs=45.7

Q ss_pred             ccccCCCHHHHHHHHHHHHH-hCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccc
Q 034553            3 LDCDCHNVKALYRRAQVYME-IADLILAELDIKKAIEADPQNREVKLLQKSLKQLQAESNKRDAKFYANMFARVT   76 (91)
Q Consensus         3 l~~~p~~~ka~~rrg~a~~~-lg~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~mf~~~~   76 (91)
                      ++..+.....|..-|...+. .++.+.|...|+.+++.-|.+..++...-.....+++.... +..+.+....++
T Consensus        28 ~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l~~~~d~~~a-R~lfer~i~~l~  101 (280)
T PF05843_consen   28 RKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDFLIKLNDINNA-RALFERAISSLP  101 (280)
T ss_dssp             HCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-HHHH-HHHHHHHCCTSS
T ss_pred             HcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhCcHHHH-HHHHHHHHHhcC
Confidence            33344567778888888777 45666699999999999999887776665555555544332 445555554443

The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.

>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]

Probab=91.99  E-value=0.094  Score=37.10  Aligned_cols=53  Identities=15%  Similarity=0.082  Sum_probs=44.7

Q ss_pred             cccccCCCHHHHHH-HHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Q 034553            2 VLDCDCHNVKALYR-RAQVYMEIADLILAELDIKKAIEADPQNREVKLLQKSLK   54 (91)
Q Consensus         2 al~~~p~~~ka~~r-rg~a~~~lg~~~~A~~~~~~al~l~p~~~~~~~~l~~~~   54 (91)
                      ++..+|.|++-|.- .+.-+...++++.|...|.+++.++|+++.++.+.-+.+
T Consensus       133 ~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~~p~iw~eyfr~E  186 (435)
T COG5191         133 CLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSRSPRIWIEYFRME  186 (435)
T ss_pred             HHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCCCchHHHHHHHHH
Confidence            57789999999887 455678899999999999999999999998877665544

>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia

Probab=91.99  E-value=1.2  Score=28.37  Aligned_cols=58  Identities=10%  Similarity=-0.174  Sum_probs=50.2

Q ss_pred             ccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH
Q 034553            5 CDCHNVKALYRRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQKSLKQLQAESNK   62 (91)
Q Consensus         5 ~~p~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~   62 (91)
                      +.|+++..-.--|..++..|+|.+|+..|+.+.+-.|..+-++..+.-|-..++....
T Consensus        39 LRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~~~D~~W   96 (160)
T PF09613_consen   39 LRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLYALGDPSW   96 (160)
T ss_pred             hCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHHcCChHH
Confidence            5799999999999999999999999999999988889888888888888776655544

>smart00386 HAT HAT (Half-A-TPR) repeats

Probab=91.99  E-value=0.54  Score=20.44  Aligned_cols=30  Identities=23%  Similarity=0.213  Sum_probs=25.0

Q ss_pred             CCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Q 034553           24 ADLILAELDIKKAIEADPQNREVKLLQKSL   53 (91)
Q Consensus        24 g~~~~A~~~~~~al~l~p~~~~~~~~l~~~   53 (91)
                      |+++.|...|++++...|.+..++......
T Consensus         1 ~~~~~~r~i~e~~l~~~~~~~~~W~~y~~~   30 (33)
T smart00386        1 GDIERARKIYERALEKFPKSVELWLKYAEF   30 (33)
T ss_pred             CcHHHHHHHHHHHHHHCCCChHHHHHHHHH
Confidence            578899999999999999888887766544

Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.

>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=91.97  E-value=1.1  Score=31.21  Aligned_cols=56  Identities=16%  Similarity=0.044  Sum_probs=46.3

Q ss_pred             ccccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCC--CHHHHHHHHHHHHHHH
Q 034553            3 LDCDCHNVKALYRRAQVYMEIADLILAELDIKKAIEADPQ--NREVKLLQKSLKQLQA   58 (91)
Q Consensus         3 l~~~p~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~--~~~~~~~l~~~~~~~~   58 (91)
                      +..||++..+-+..|..+...|++++|.+.+-..++.|-.  +..+++.+-.+-...+
T Consensus       229 ~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g  286 (304)
T COG3118         229 LAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFG  286 (304)
T ss_pred             HHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcC
Confidence            4569999999999999999999999999999999987654  4567777766666555

>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=91.91  E-value=0.84  Score=34.66  Aligned_cols=52  Identities=17%  Similarity=0.038  Sum_probs=36.9

Q ss_pred             ccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCH--HHHHHHHHHHHH
Q 034553            5 CDCHNVKALYRRAQVYMEIADLILAELDIKKAIEADPQNR--EVKLLQKSLKQL   56 (91)
Q Consensus         5 ~~p~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~--~~~~~l~~~~~~   56 (91)
                      +|+...+.+.-+|++++++|+|++|+..|+...+-+.++.  +++..+..+...
T Consensus       105 ~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~  158 (652)
T KOG2376|consen  105 LDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAA  158 (652)
T ss_pred             ccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHh
Confidence            4666778888899999999999999999998877654433  444444444333

>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=91.85  E-value=0.42  Score=37.00  Aligned_cols=56  Identities=30%  Similarity=0.359  Sum_probs=46.2

Q ss_pred             cccccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
Q 034553            2 VLDCDCHNVKALYRRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQKSLKQLQ   57 (91)
Q Consensus         2 al~~~p~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~   57 (91)
                      |+...|...+++++|+.+|..++.++-|++++......+|++.++.....+++..+
T Consensus       119 a~~~~p~i~~~Ll~r~~~y~al~k~d~a~rdl~i~~~~~p~~~~~~eif~elk~ll  174 (748)
T KOG4151|consen  119 ALESQPRISKALLKRARKYEALNKLDLAVRDLRIVEKMDPSNVSASEIFEELKGLL  174 (748)
T ss_pred             hhhccchHHHHHhhhhhHHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHH
Confidence            56778999999999999999999999999999999999999966555444444333

>KOG1840 consensus Kinesin light chain [Cytoskeleton]

Probab=91.53  E-value=1.4  Score=32.92  Aligned_cols=69  Identities=14%  Similarity=0.092  Sum_probs=53.5

Q ss_pred             ccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH--------CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 034553            5 CDCHNVKALYRRAQVYMEIADLILAELDIKKAIEA--------DPQNREVKLLQKSLKQLQAESNKRDAKFYANMFAR   74 (91)
Q Consensus         5 ~~p~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l--------~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~mf~~   74 (91)
                      -+|.-..+....|..|...|+|+.|+..|+.++.+        .|.-......+..+...++++.++. ..|++++..
T Consensus       194 ~~P~~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv-~ly~~AL~i  270 (508)
T KOG1840|consen  194 EDPERLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAV-NLYEEALTI  270 (508)
T ss_pred             CCchHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHH-HHHHHHHHH
Confidence            35777777888999999999999999999999998        5655566666777777777777763 356666543

>PHA02537 M terminase endonuclease subunit; Provisional

Probab=91.51  E-value=0.76  Score=30.84  Aligned_cols=52  Identities=21%  Similarity=0.162  Sum_probs=38.0

Q ss_pred             CCCHHHHHHHHHHHHH-----------hCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH
Q 034553            7 CHNVKALYRRAQVYME-----------IADLILAELDIKKAIEADPQNREVKLLQKSLKQLQAE   59 (91)
Q Consensus         7 p~~~ka~~rrg~a~~~-----------lg~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~   59 (91)
                      |+-+.|-+.+...+..           .+++..|+..|++|+.++|+ ..++..+.++.+.++.
T Consensus       164 pd~vrAKl~K~~G~~llr~~~g~~~~d~~~l~~Al~~L~rA~~l~~k-~GVK~~i~~l~~~lr~  226 (230)
T PHA02537        164 PDEVRAKLYKAAGYLLLRNEKGEPIGDAETLQLALALLQRAFQLNDK-CGVKKDIERLERRLKA  226 (230)
T ss_pred             ChHHHHHHHHHHHHHHhhcccCCCccCcccHHHHHHHHHHHHHhCCC-CChHHHHHHHHHHHhh
Confidence            4556665555555543           35778999999999999986 5677778888777764

>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]

Probab=91.33  E-value=1.3  Score=31.18  Aligned_cols=51  Identities=18%  Similarity=0.094  Sum_probs=43.2

Q ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH
Q 034553           10 VKALYRRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQKSLKQLQAES   60 (91)
Q Consensus        10 ~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~   60 (91)
                      .+-++..+..+...|.+.+|++..++++.++|=+.+....+..+-..++..
T Consensus       279 ~kllgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~  329 (361)
T COG3947         279 MKLLGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDE  329 (361)
T ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccc
Confidence            345667788899999999999999999999999888888887777777663

>COG4105 ComL DNA uptake lipoprotein [General function prediction only]

Probab=91.00  E-value=0.58  Score=31.85  Aligned_cols=40  Identities=20%  Similarity=0.118  Sum_probs=35.7

Q ss_pred             cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHH
Q 034553            6 DCHNVKALYRRAQVYMEIADLILAELDIKKAIEADPQNRE   45 (91)
Q Consensus         6 ~p~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~   45 (91)
                      .|-..++..-.+.++++-++|++|+...++-+.+.|+++.
T Consensus        67 s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n  106 (254)
T COG4105          67 SPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPN  106 (254)
T ss_pred             CcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCC
Confidence            3456789999999999999999999999999999998763

>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]

Probab=90.98  E-value=1.2  Score=32.13  Aligned_cols=60  Identities=10%  Similarity=-0.035  Sum_probs=49.0

Q ss_pred             ccccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
Q 034553            3 LDCDCHNVKALYRRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQKSLKQLQAESNKR   63 (91)
Q Consensus         3 l~~~p~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~   63 (91)
                      +...|+++-.++-.|..+++-+.|.+|...|+.+++..|+. .....+..+-..+++...+
T Consensus       321 l~~h~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s~-~~~~~la~~~~~~g~~~~A  380 (400)
T COG3071         321 LKQHPEDPLLLSTLGRLALKNKLWGKASEALEAALKLRPSA-SDYAELADALDQLGEPEEA  380 (400)
T ss_pred             HHhCCCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCCh-hhHHHHHHHHHHcCChHHH
Confidence            56789999999999999999999999999999999999874 4556666666666655544

>PF02064 MAS20: MAS20 protein import receptor; InterPro: IPR002056 Virtually all mitochondrial precursors are imported via the same mechanism []: precursors first bind to receptors on the mitochondrial surface, then insert into the translocation channel in the outer membrane

Probab=90.51  E-value=1.3  Score=26.87  Aligned_cols=38  Identities=16%  Similarity=0.139  Sum_probs=31.0

Q ss_pred             HHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHH
Q 034553           14 YRRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQK   51 (91)
Q Consensus        14 ~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~~~~~l~   51 (91)
                      ...|..++..|++++|..+|-+|+.+.|+-.++...++
T Consensus        67 V~lGE~L~~~G~~~~aa~hf~nAl~V~~qP~~LL~i~q  104 (121)
T PF02064_consen   67 VQLGEQLLAQGDYEEAAEHFYNALKVCPQPAELLQIYQ  104 (121)
T ss_dssp             HHHHHHHHHTT-HHHHHHHHHHHHHTSSSHHHHHHHHH
T ss_pred             HHHHHHHHhCCCHHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence            35788899999999999999999999998766655544

Many outer-membrane proteins participate in the early stages of import, four of which (MAS20, MAS22, MAS37 and MAS70) are components of the receptor. MAS20, which forms a subcomplex with MAS22, seems to interact with most or all mitochondrial precursors, suggesting that the protein binds directly to mitochondrial targeting sequences. The MAS37 and MAS70 components also form a subcomplex, the two subcomplexes possibly binding via their trans- membrane (TM) regions - the TM region of MAS70 promotes oligomerisation of attatched protein domains and shares sequence similarity with the TM region of MAS20 []. MAS20 is also known as TOM20.; GO: 0006605 protein targeting, 0006886 intracellular protein transport, 0005742 mitochondrial outer membrane translocase complex; PDB: 3AX3_A 3AWR_B 2V1S_A 3AX5_C 3AX2_C 1OM2_A 2V1T_B.

>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]

Probab=90.43  E-value=2.6  Score=28.06  Aligned_cols=54  Identities=17%  Similarity=0.077  Sum_probs=41.8

Q ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHH-HCCCCHHHHHHHHHHHHHHHHHHHH
Q 034553           10 VKALYRRAQVYMEIADLILAELDIKKAIE-ADPQNREVKLLQKSLKQLQAESNKR   63 (91)
Q Consensus        10 ~ka~~rrg~a~~~lg~~~~A~~~~~~al~-l~p~~~~~~~~l~~~~~~~~~~~~~   63 (91)
                      +.-.+|+|.++..+|++.+|...|+.++. +-..++...-.+...+-.+.+....
T Consensus        89 vqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a  143 (251)
T COG4700          89 VQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAA  143 (251)
T ss_pred             HHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHH
Confidence            34578999999999999999999999987 5556677766666666666665554

>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=90.22  E-value=2  Score=23.85  Aligned_cols=36  Identities=22%  Similarity=0.080  Sum_probs=27.4

Q ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHHH-------CCCCHH
Q 034553           10 VKALYRRAQVYMEIADLILAELDIKKAIEA-------DPQNRE   45 (91)
Q Consensus        10 ~ka~~rrg~a~~~lg~~~~A~~~~~~al~l-------~p~~~~   45 (91)
                      ...+..+|.-+-..|++++|+..|+.+.++       .|+++.
T Consensus         6 A~~~a~~AVe~D~~gr~~eAi~~Y~~aIe~L~q~~~~~pD~~~   48 (75)
T cd02682           6 ARKYAINAVKAEKEGNAEDAITNYKKAIEVLSQIVKNYPDSPT   48 (75)
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHhCCChHH
Confidence            456778888899999988888887776654       677654

This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.

>PRK10941 hypothetical protein; Provisional

Probab=89.13  E-value=2.7  Score=28.77  Aligned_cols=59  Identities=10%  Similarity=-0.027  Sum_probs=43.5

Q ss_pred             HHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccc
Q 034553           17 AQVYMEIADLILAELDIKKAIEADPQNREVKLLQKSLKQLQAESNKRDAKFYANMFARVT   76 (91)
Q Consensus        17 g~a~~~lg~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~mf~~~~   76 (91)
                      =.+++..++++.|+...++.+.++|+++.-+.....+...+.-...+- .-+..+.++.+
T Consensus       188 K~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~-~DL~~fl~~~P  246 (269)
T PRK10941        188 KAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVAL-SDLSYFVEQCP  246 (269)
T ss_pred             HHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHH-HHHHHHHHhCC
Confidence            456789999999999999999999999977777777777776655542 22344444443

>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=88.86  E-value=2.7  Score=23.31  Aligned_cols=30  Identities=17%  Similarity=0.127  Sum_probs=24.5

Q ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Q 034553           10 VKALYRRAQVYMEIADLILAELDIKKAIEA   39 (91)
Q Consensus        10 ~ka~~rrg~a~~~lg~~~~A~~~~~~al~l   39 (91)
                      ...+..+|.-.-..|+|++|+..|..+++.
T Consensus         6 a~~l~~~Ave~D~~g~y~eAl~~Y~~aie~   35 (77)
T cd02683           6 AKEVLKRAVELDQEGRFQEALVCYQEGIDL   35 (77)
T ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence            456788899999999999988888887663

This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.

>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]

Probab=88.61  E-value=0.99  Score=29.93  Aligned_cols=56  Identities=9%  Similarity=-0.126  Sum_probs=43.9

Q ss_pred             CcccccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Q 034553            1 MVLDCDCHNVKALYRRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQKSLKQL   56 (91)
Q Consensus         1 ~al~~~p~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~   56 (91)
                      +|+.+.|++...|...|......|+.=+|+=.|-+++-..-..+.+...|..+-.+
T Consensus         7 ~A~~l~P~~G~p~nQLAvl~~~~~~~l~avy~y~Rsl~~~~Pf~~A~~NL~~lf~~   62 (278)
T PF10373_consen    7 KAIRLLPSNGNPYNQLAVLASYQGDDLDAVYYYIRSLAVRIPFPSARENLQKLFEK   62 (278)
T ss_dssp             HHHHH-TTBSHHHHHHHHHHHHTT-HHHHHHHHHHHHSSSB--HHHHHHHHHHHHH
T ss_pred             HHHHhCCCCCCcccchhhhhccccchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence            36788999999999999999999999999999999998654446677766666555

This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.

>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene

Probab=88.33  E-value=2.7  Score=31.49  Aligned_cols=53  Identities=11%  Similarity=-0.099  Sum_probs=38.3

Q ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCC--HHHHHHHHHHHHHHHHHHHH
Q 034553           11 KALYRRAQVYMEIADLILAELDIKKAIEADPQN--REVKLLQKSLKQLQAESNKR   63 (91)
Q Consensus        11 ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~--~~~~~~l~~~~~~~~~~~~~   63 (91)
                      -+-.|.|.+.-++|+.++|++.++..++..|.+  ..++..|-.+--.++.+.+.
T Consensus       260 y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~  314 (539)
T PF04184_consen  260 YAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADV  314 (539)
T ss_pred             hhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHH
Confidence            344566788889999999999999999988863  35666665555555554443

The molecular function of this protein is uncertain.

>KOG0529 consensus Protein geranylgeranyltransferase type II, alpha subunit [Posttranslational modification, protein turnover, chaperones]

Probab=88.24  E-value=2.5  Score=30.75  Aligned_cols=72  Identities=17%  Similarity=0.156  Sum_probs=55.6

Q ss_pred             cccccCCCHHHHHHHHHHHHHhCC--HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH---HHHHHHHHHHhhh
Q 034553            2 VLDCDCHNVKALYRRAQVYMEIAD--LILAELDIKKAIEADPQNREVKLLQKSLKQLQAES---NKRDAKFYANMFA   73 (91)
Q Consensus         2 al~~~p~~~ka~~rrg~a~~~lg~--~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~---~~~~~~~~~~mf~   73 (91)
                      +|+.+|+..-+|+.|.-++.+.+.  +..=+..++++|++||.|-.++.-.+-+-......   ...+-+..-++..
T Consensus       101 ~L~~npksY~aW~hR~w~L~~~p~~~~~~EL~lcek~L~~D~RNfh~W~YRRfV~~~~~~~~~~~~~El~ftt~~I~  177 (421)
T KOG0529|consen  101 ALKVNPKSYGAWHHRKWVLQKNPHSDWNTELQLCEKALKQDPRNFHAWHYRRFVVEQAERSRNLEKEELEFTTKLIN  177 (421)
T ss_pred             HHHhCchhHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCcccccchHHHHHHHHHHhcccccchhHHHHHHHHHh
Confidence            578899999999999999987764  67888899999999999988888777777666665   4444444444443

>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=87.77  E-value=1.8  Score=29.74  Aligned_cols=45  Identities=16%  Similarity=0.158  Sum_probs=36.8

Q ss_pred             cccccCCCHHHHHHHHHHHHHhCCH-HHHHHHHHHHHHHCCCCHHH
Q 034553            2 VLDCDCHNVKALYRRAQVYMEIADL-ILAELDIKKAIEADPQNREV   46 (91)
Q Consensus         2 al~~~p~~~ka~~rrg~a~~~lg~~-~~A~~~~~~al~l~p~~~~~   46 (91)
                      |+..+|+++.++..++.+...+|+. +.+.+.+......+|+++-+
T Consensus       227 al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~~p~h~~~  272 (290)
T PF04733_consen  227 ALEKDPNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQSNPNHPLV  272 (290)
T ss_dssp             HCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHHTTTSHHH
T ss_pred             HHHhccCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHHhCCCChHH
Confidence            6788999999999999999999999 66667778878899997644

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.

>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A

Probab=87.63  E-value=3.2  Score=28.11  Aligned_cols=63  Identities=22%  Similarity=0.132  Sum_probs=41.7

Q ss_pred             HHHHHHHHHHHHHh-CCHHHHHHHHHHHHHHC--CCCH----HHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 034553           10 VKALYRRAQVYMEI-ADLILAELDIKKAIEAD--PQNR----EVKLLQKSLKQLQAESNKRDAKFYANMFA   73 (91)
Q Consensus        10 ~ka~~rrg~a~~~l-g~~~~A~~~~~~al~l~--p~~~----~~~~~l~~~~~~~~~~~~~~~~~~~~mf~   73 (91)
                      .+++.+.|.++... |+++.|++.|++|+++-  .+..    .+...+..+...++++.++- ..|.++..
T Consensus       114 A~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~-~~~e~~~~  183 (282)
T PF14938_consen  114 AKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAI-EIYEEVAK  183 (282)
T ss_dssp             HHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHH-HHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHH-HHHHHHHH
Confidence            56788889999888 99999999999999972  1221    45566667777777776652 34555443

>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]

Probab=87.44  E-value=4.7  Score=29.22  Aligned_cols=55  Identities=16%  Similarity=0.155  Sum_probs=45.3

Q ss_pred             CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH
Q 034553            8 HNVKALYRRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQKSLKQLQAESNK   62 (91)
Q Consensus         8 ~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~   62 (91)
                      ++.-...-|+......|+++.|..-...+++..|.++++.....++...++...+
T Consensus       151 ~~l~v~ltrarlll~~~d~~aA~~~v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~  205 (400)
T COG3071         151 DTLAVELTRARLLLNRRDYPAARENVDQLLEMTPRHPEVLRLALRAYIRLGAWQA  205 (400)
T ss_pred             chHHHHHHHHHHHHhCCCchhHHHHHHHHHHhCcCChHHHHHHHHHHHHhccHHH
Confidence            3555677888999999999999999999999999999888887777777766544

>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]

Probab=87.21  E-value=9.5  Score=30.53  Aligned_cols=69  Identities=14%  Similarity=0.061  Sum_probs=54.0

Q ss_pred             CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccC
Q 034553            7 CHNVKALYRRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQKSLKQLQAESNKRDAKFYANMFARVTK   77 (91)
Q Consensus         7 p~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~mf~~~~~   77 (91)
                      +++...+--.-.+|..++.+++|+..|++++..+|+ .+....+..+..+.+.+.+.++. .=+|+..+|+
T Consensus        74 ~~D~~tLq~l~~~y~d~~~~d~~~~~Ye~~~~~~P~-eell~~lFmayvR~~~yk~qQka-a~~LyK~~pk  142 (932)
T KOG2053|consen   74 GTDDLTLQFLQNVYRDLGKLDEAVHLYERANQKYPS-EELLYHLFMAYVREKSYKKQQKA-ALQLYKNFPK  142 (932)
T ss_pred             CCchHHHHHHHHHHHHHhhhhHHHHHHHHHHhhCCc-HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhCCc
Confidence            344555556677899999999999999999999999 88888999999999988887653 3344444443

>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 []

Probab=86.94  E-value=0.7  Score=33.47  Aligned_cols=32  Identities=9%  Similarity=0.119  Sum_probs=28.3

Q ss_pred             CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Q 034553            7 CHNVKALYRRAQVYMEIADLILAELDIKKAIE   38 (91)
Q Consensus         7 p~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~   38 (91)
                      +-++-.+|..|.+|+.+++|.+|+..|...|-
T Consensus       161 ~~~is~~YyvGFaylMlrRY~DAir~f~~iL~  192 (404)
T PF10255_consen  161 ACHISTYYYVGFAYLMLRRYADAIRTFSQILL  192 (404)
T ss_pred             chheehHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45677899999999999999999999988765

>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=86.84  E-value=2.7  Score=23.35  Aligned_cols=30  Identities=17%  Similarity=-0.051  Sum_probs=25.4

Q ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Q 034553           10 VKALYRRAQVYMEIADLILAELDIKKAIEA   39 (91)
Q Consensus        10 ~ka~~rrg~a~~~lg~~~~A~~~~~~al~l   39 (91)
                      ...+.++|.-.-..|+|++|+..|..++++
T Consensus         6 Ai~~a~~Ave~D~~g~y~eA~~~Y~~aie~   35 (76)
T cd02681           6 AVQFARLAVQRDQEGRYSEAVFYYKEAAQL   35 (76)
T ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence            345778899999999999999999998874

This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.

>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]

Probab=86.67  E-value=3.9  Score=29.25  Aligned_cols=52  Identities=19%  Similarity=0.164  Sum_probs=42.2

Q ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
Q 034553           12 ALYRRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQKSLKQLQAESNKR   63 (91)
Q Consensus        12 a~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~   63 (91)
                      -|-..++.+....+.+.|+..+.+|++.+|+..-+.-.+..+....+++..+
T Consensus       182 fyCELAq~~~~~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~A  233 (389)
T COG2956         182 FYCELAQQALASSDVDRARELLKKALQADKKCVRASIILGRVELAKGDYQKA  233 (389)
T ss_pred             HHHHHHHHHhhhhhHHHHHHHHHHHHhhCccceehhhhhhHHHHhccchHHH
Confidence            3556778888888999999999999999999887777777777777666554

>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]

Probab=85.86  E-value=5.9  Score=30.23  Aligned_cols=49  Identities=24%  Similarity=0.058  Sum_probs=39.2

Q ss_pred             cccccCCCHHHHHHHHHHHHHhCCHHHHHHHHHH-HHHHCCCCHHHHHHH
Q 034553            2 VLDCDCHNVKALYRRAQVYMEIADLILAELDIKK-AIEADPQNREVKLLQ   50 (91)
Q Consensus         2 al~~~p~~~ka~~rrg~a~~~lg~~~~A~~~~~~-al~l~p~~~~~~~~l   50 (91)
                      +|..||++..++...|.+....|....+..++.. +....|+|.++..-+
T Consensus        93 ~l~~~~~~~~~~~~L~~ale~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~  142 (620)
T COG3914          93 PLSVNPENCPAVQNLAAALELDGLQFLALADISEIAEWLSPDNAEFLGHL  142 (620)
T ss_pred             hHhcCcccchHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCcchHHHHhhH
Confidence            4677899999999999998888877777766666 888888888777666

>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]

Probab=85.85  E-value=7.8  Score=29.56  Aligned_cols=62  Identities=3%  Similarity=-0.053  Sum_probs=47.5

Q ss_pred             cccccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
Q 034553            2 VLDCDCHNVKALYRRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQKSLKQLQAESNKRD   64 (91)
Q Consensus         2 al~~~p~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~   64 (91)
                      -|+.+|.++.+|+.+-.-+... -+++..++|++.+..-|..+.++...-+-+-+.+.+..-|
T Consensus        12 rie~nP~di~sw~~lire~qt~-~~~~~R~~YEq~~~~FP~s~r~W~~yi~~El~skdfe~VE   73 (656)
T KOG1914|consen   12 RIEENPYDIDSWSQLIREAQTQ-PIDKVRETYEQLVNVFPSSPRAWKLYIERELASKDFESVE   73 (656)
T ss_pred             HHhcCCccHHHHHHHHHHHccC-CHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhhHHHHH
Confidence            3678999999999876655444 9999999999999999998887777666655555555443

>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]

Probab=85.60  E-value=1.8  Score=30.80  Aligned_cols=36  Identities=19%  Similarity=0.224  Sum_probs=33.1

Q ss_pred             ccccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Q 034553            3 LDCDCHNVKALYRRAQVYMEIADLILAELDIKKAIE   38 (91)
Q Consensus         3 l~~~p~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~   38 (91)
                      |+.+|-++.++...+.++...|+++.|-+.+++||=
T Consensus        33 l~~~PyHidtLlqls~v~~~~gd~~~A~~lleRALf   68 (360)
T PF04910_consen   33 LQKNPYHIDTLLQLSEVYRQQGDHAQANDLLERALF   68 (360)
T ss_pred             HHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            567899999999999999999999999999999864

Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].

>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function

Probab=85.38  E-value=3.5  Score=27.19  Aligned_cols=31  Identities=13%  Similarity=0.124  Sum_probs=24.3

Q ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHC
Q 034553           10 VKALYRRAQVYMEIADLILAELDIKKAIEAD   40 (91)
Q Consensus        10 ~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~   40 (91)
                      ...+|..|....++|++++|+..|.+++..-
T Consensus       165 ~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~  195 (214)
T PF09986_consen  165 ATLLYLIGELNRRLGNYDEAKRWFSRVIGSK  195 (214)
T ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHcCC
Confidence            4567778888888888888888888887753

>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking

Probab=84.74  E-value=4.3  Score=21.56  Aligned_cols=30  Identities=27%  Similarity=0.056  Sum_probs=24.9

Q ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Q 034553           10 VKALYRRAQVYMEIADLILAELDIKKAIEA   39 (91)
Q Consensus        10 ~ka~~rrg~a~~~lg~~~~A~~~~~~al~l   39 (91)
                      ...+..+|.-.-..|++++|+..|..|++.
T Consensus         5 A~~~~~~Av~~D~~g~~~~A~~~Y~~ai~~   34 (69)
T PF04212_consen    5 AIELIKKAVEADEAGNYEEALELYKEAIEY   34 (69)
T ss_dssp             HHHHHHHHHHHHHTTSHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence            345678889999999999999999888774

; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....

>KOG1310 consensus WD40 repeat protein [General function prediction only]

Probab=84.72  E-value=3.1  Score=31.70  Aligned_cols=63  Identities=16%  Similarity=0.074  Sum_probs=51.5

Q ss_pred             cccccCCCHHHHHHHHHHHHHh---CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
Q 034553            2 VLDCDCHNVKALYRRAQVYMEI---ADLILAELDIKKAIEADPQNREVKLLQKSLKQLQAESNKRD   64 (91)
Q Consensus         2 al~~~p~~~ka~~rrg~a~~~l---g~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~   64 (91)
                      +++.-|.....|-.|+.++++.   |+--.|+.|+..|++++|....+.-.|.++-..+....++.
T Consensus       400 a~q~~~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrln~s~~kah~~la~aL~el~r~~eal  465 (758)
T KOG1310|consen  400 AIQYVPDAIYLLENRAAALMKRKWRGDSYLALRDCHVALRLNPSIQKAHFRLARALNELTRYLEAL  465 (758)
T ss_pred             HhhhccchhHHHHhHHHHHHhhhccccHHHHHHhHHhhccCChHHHHHHHHHHHHHHHHhhHHHhh
Confidence            4556678888888999998874   57788999999999999998888888888877777776653

>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=84.39  E-value=8.3  Score=29.56  Aligned_cols=57  Identities=12%  Similarity=0.107  Sum_probs=36.0

Q ss_pred             HHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 034553           14 YRRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQKSLKQLQAESNKRDAKFYANMFAR   74 (91)
Q Consensus        14 ~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~mf~~   74 (91)
                      |.++.++++++..++|+..++   .+++.+..+......+-.++..+.+.- ..|+.+...
T Consensus        83 fEKAYc~Yrlnk~Dealk~~~---~~~~~~~~ll~L~AQvlYrl~~ydeal-diY~~L~kn  139 (652)
T KOG2376|consen   83 FEKAYCEYRLNKLDEALKTLK---GLDRLDDKLLELRAQVLYRLERYDEAL-DIYQHLAKN  139 (652)
T ss_pred             HHHHHHHHHcccHHHHHHHHh---cccccchHHHHHHHHHHHHHhhHHHHH-HHHHHHHhc
Confidence            577777777777777777777   455555556666666666666666542 345554433

>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases

Probab=84.28  E-value=7.4  Score=26.49  Aligned_cols=54  Identities=19%  Similarity=0.013  Sum_probs=44.2

Q ss_pred             CHHHHHHHHHHHHHh------CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH
Q 034553            9 NVKALYRRAQVYMEI------ADLILAELDIKKAIEADPQNREVKLLQKSLKQLQAESNK   62 (91)
Q Consensus         9 ~~ka~~rrg~a~~~l------g~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~   62 (91)
                      ..++++.+|.-...+      +..++++..|..+.+++|+...+...+......+-....
T Consensus       251 ~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~~~~~~~~~~  310 (352)
T PF02259_consen  251 KAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWALFNDKLLESDP  310 (352)
T ss_pred             HHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHhhh
Confidence            467888888888888      899999999999999999988877777777666655443

Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding

>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome

Probab=84.26  E-value=5.2  Score=25.50  Aligned_cols=33  Identities=27%  Similarity=0.121  Sum_probs=29.0

Q ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCC
Q 034553           10 VKALYRRAQVYMEIADLILAELDIKKAIEADPQ   42 (91)
Q Consensus        10 ~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~   42 (91)
                      ..++..+|.-|+..|+++.|++.|.++.+-...
T Consensus        36 r~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~   68 (177)
T PF10602_consen   36 RMALEDLADHYCKIGDLEEALKAYSRARDYCTS   68 (177)
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCC
Confidence            468899999999999999999999998886543

This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.

>COG4531 ZnuA ABC-type Zn2+ transport system, periplasmic component/surface adhesin [Inorganic ion transport and metabolism]

Probab=83.79  E-value=3.8  Score=28.53  Aligned_cols=56  Identities=29%  Similarity=0.288  Sum_probs=38.1

Q ss_pred             HHHHHHHHHHHCCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCc--hhhhhhhhc
Q 034553           29 AELDIKKAIEADPQNR-EVKLLQKSLKQLQAESNKRDAKFYANMFARVTKDS--SVATKVGYF   88 (91)
Q Consensus        29 A~~~~~~al~l~p~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~mf~~~~~~~--~~~~~~g~f   88 (91)
                      |...-.+..+++|.|. .+...+......+....++-.+.    +..+.++.  -+++.||||
T Consensus       164 A~~i~~~L~e~dp~~~a~y~aNlk~f~~~La~~d~~i~~~----L~pvk~Kpf~VFHDAY~YF  222 (318)
T COG4531         164 AAAIAKKLAELDPQNAAKYDANLKDFEAQLAALDKKVGEE----LAPVKGKPFFVFHDAYGYF  222 (318)
T ss_pred             HHHHHHHHHhhChhhHHHHHHHHHHHHHHHHHHHHHHHHH----hcccCCCCeEEEechHHHH
Confidence            5556678889999987 57788888888887776654433    44444433  237788887

>KOG2610 consensus Uncharacterized conserved protein [Function unknown]

Probab=83.52  E-value=6.5  Score=28.49  Aligned_cols=49  Identities=10%  Similarity=-0.033  Sum_probs=40.2

Q ss_pred             HHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
Q 034553           15 RRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQKSLKQLQAESNKR   63 (91)
Q Consensus        15 rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~   63 (91)
                      -.+..++..|-|++|.+.-+++++++|.+.=+...+..+.+.-.+.+++
T Consensus       180 myaFgL~E~g~y~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg  228 (491)
T KOG2610|consen  180 MYAFGLEECGIYDDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEG  228 (491)
T ss_pred             HHHhhHHHhccchhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhH
Confidence            3466788999999999999999999999987777777777766666554

>COG5091 SGT1 Suppressor of G2 allele of skp1 and related proteins [General function prediction only]

Probab=83.28  E-value=2.8  Score=29.27  Aligned_cols=51  Identities=24%  Similarity=0.264  Sum_probs=36.1

Q ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
Q 034553           12 ALYRRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQKSLKQLQAESNKR   63 (91)
Q Consensus        12 a~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~   63 (91)
                      .-+|++.+++.+.+|+.|-..|..|+.+--++ .+-.+-.++..++....++
T Consensus        81 ~~~~~~v~~~~ik~Ye~a~~~F~~A~~~~~~d-~L~~We~rLet~L~~~~kk  131 (368)
T COG5091          81 VNFRYFVHFFNIKDYELAQSYFKKAKNLYVDD-TLPLWEDRLETKLNKKNKK  131 (368)
T ss_pred             ehhhhHHHhhhHHHHHHHHHHHHHHHHHhhcc-cchHHHHHHHHHHhHhhHh
Confidence            35899999999999999999999999984333 3333444555555444443

>PF15469 Sec5: Exocyst complex component Sec5

Probab=83.01  E-value=8.7  Score=24.34  Aligned_cols=43  Identities=19%  Similarity=0.054  Sum_probs=31.7

Q ss_pred             HHHhCCHHHHHHHHHHHHHHCC----CCHHHHHHHHHHHHHHHHHHH
Q 034553           20 YMEIADLILAELDIKKAIEADP----QNREVKLLQKSLKQLQAESNK   62 (91)
Q Consensus        20 ~~~lg~~~~A~~~~~~al~l~p----~~~~~~~~l~~~~~~~~~~~~   62 (91)
                      ++..|+|+.++.+|.+|..+--    ....+...+..++..+.+.+.
T Consensus        96 ~i~~~dy~~~i~dY~kak~l~~~~~~~~~vf~~v~~eve~ii~~~r~  142 (182)
T PF15469_consen   96 CIKKGDYDQAINDYKKAKSLFEKYKQQVPVFQKVWSEVEKIIEEFRE  142 (182)
T ss_pred             HHHcCcHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHH
Confidence            4678999999999999999742    334566666777776666654

>TIGR00985 3a0801s04tom mitochondrial import receptor subunit translocase of outer membrane 20 kDa subunit

Probab=83.01  E-value=5.5  Score=25.02  Aligned_cols=38  Identities=11%  Similarity=0.169  Sum_probs=31.9

Q ss_pred             HHHHHHHHhC-CHHHHHHHHHHHHHHCCCCHHHHHHHHH
Q 034553           15 RRAQVYMEIA-DLILAELDIKKAIEADPQNREVKLLQKS   52 (91)
Q Consensus        15 rrg~a~~~lg-~~~~A~~~~~~al~l~p~~~~~~~~l~~   52 (91)
                      .+|..+...| +.++|..+|-+|+.+-|+-.++...+++
T Consensus        95 ~~GE~L~~~g~~~~ega~hf~nAl~Vc~qP~~LL~iyq~  133 (148)
T TIGR00985        95 QLGEELMAQGTNVDEGAVHFYNALKVYPQPQQLLSIYQQ  133 (148)
T ss_pred             HHHHHHHhCCCchHHHHHHHHHHHHhCCCHHHHHHHHHh
Confidence            5688899999 9999999999999999987776655543

>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins

Probab=82.79  E-value=3.7  Score=27.95  Aligned_cols=78  Identities=12%  Similarity=0.060  Sum_probs=50.8

Q ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCchhhhhhhhcc
Q 034553           12 ALYRRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQKSLKQLQAESNKRDAKFYANMFARVTKDSSVATKVGYFA   89 (91)
Q Consensus        12 a~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~mf~~~~~~~~~~~~~g~f~   89 (91)
                      +|........+.+..+.|...|.+|++-.+-...+......++.......+.-...|......++.+.+.-..|-.|+
T Consensus         3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l   80 (280)
T PF05843_consen    3 VWIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDFL   80 (280)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Confidence            345555666666779999999999996555566777777777666444333224456666677777666666666665

The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.

>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional

Probab=82.66  E-value=4.1  Score=31.04  Aligned_cols=36  Identities=6%  Similarity=-0.057  Sum_probs=21.1

Q ss_pred             ccccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Q 034553            3 LDCDCHNVKALYRRAQVYMEIADLILAELDIKKAIE   38 (91)
Q Consensus         3 l~~~p~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~   38 (91)
                      ++++|+++..|.-...+|...|++++|.+.++...+
T Consensus       521 ~~~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~  556 (697)
T PLN03081        521 YGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKR  556 (697)
T ss_pred             hCCCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence            345565555666666666666666666666655443

>cd02678 MIT_VPS4 MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=82.29  E-value=6.2  Score=21.49  Aligned_cols=30  Identities=17%  Similarity=-0.021  Sum_probs=24.2

Q ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Q 034553           10 VKALYRRAQVYMEIADLILAELDIKKAIEA   39 (91)
Q Consensus        10 ~ka~~rrg~a~~~lg~~~~A~~~~~~al~l   39 (91)
                      +..+..+|.-.-..|+|++|+..|..|++.
T Consensus         6 A~~l~~~Av~~D~~g~y~eA~~~Y~~aie~   35 (75)
T cd02678           6 AIELVKKAIEEDNAGNYEEALRLYQHALEY   35 (75)
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            345778888888999999998888887764

This sub-family of MIT domains is found in intracellular protein transport proteins of the AAA-ATPase family. The molecular function of the MIT domain is unclear.

>cd02679 MIT_spastin MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=81.99  E-value=4.6  Score=22.61  Aligned_cols=29  Identities=17%  Similarity=-0.025  Sum_probs=23.0

Q ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Q 034553           11 KALYRRAQVYMEIADLILAELDIKKAIEA   39 (91)
Q Consensus        11 ka~~rrg~a~~~lg~~~~A~~~~~~al~l   39 (91)
                      ..+..+|..+-..|+.++|+..|++++..
T Consensus         9 ~~~I~kaL~~dE~g~~e~Al~~Y~~gi~~   37 (79)
T cd02679           9 FEEISKALRADEWGDKEQALAHYRKGLRE   37 (79)
T ss_pred             HHHHHHHhhhhhcCCHHHHHHHHHHHHHH
Confidence            34556667777789999999999999885

This MIT domain sub-family is found in the AAA protein spastin, a probable ATPase involved in the assembly or function of nuclear protein complexes; spastins might also be involved in microtubule dynamics. The molecular function of the MIT domain is unclear.

>KOG4340 consensus Uncharacterized conserved protein [Function unknown]

Probab=81.79  E-value=4.8  Score=28.75  Aligned_cols=66  Identities=5%  Similarity=-0.043  Sum_probs=50.6

Q ss_pred             CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 034553            8 HNVKALYRRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQKSLKQLQAESNKRDAKFYANMFAR   74 (91)
Q Consensus         8 ~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~mf~~   74 (91)
                      +...+....|-..++-|+|++|++-|+.|++...-++.+.-.+..+.-..+++..+-+ ..+.+.++
T Consensus       142 n~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyqpllAYniALaHy~~~qyasALk-~iSEIieR  207 (459)
T KOG4340|consen  142 NEADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQPLLAYNLALAHYSSRQYASALK-HISEIIER  207 (459)
T ss_pred             CccchhccchheeeccccHHHHHHHHHHHHhhcCCCchhHHHHHHHHHhhhhHHHHHH-HHHHHHHh
Confidence            4667788888899999999999999999999988888777777777777777666543 33444443

>KOG4056 consensus Translocase of outer mitochondrial membrane complex, subunit TOM20 [Intracellular trafficking, secretion, and vesicular transport]

Probab=81.66  E-value=5.8  Score=24.71  Aligned_cols=37  Identities=8%  Similarity=-0.009  Sum_probs=31.8

Q ss_pred             HHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHH
Q 034553           15 RRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQK   51 (91)
Q Consensus        15 rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~~~~~l~   51 (91)
                      .+|..++..|+++++..++-.|+.+-|....+...++
T Consensus        86 ~lGE~L~~qg~~e~ga~h~~nAi~vcgqpaqLL~vlq  122 (143)
T KOG4056|consen   86 QLGEELLAQGNEEEGAEHLANAIVVCGQPAQLLQVLQ  122 (143)
T ss_pred             HhHHHHHHccCHHHHHHHHHHHHhhcCCHHHHHHHHH
Confidence            5799999999999999999999999998776655443

>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK

Probab=81.57  E-value=7.1  Score=24.69  Aligned_cols=58  Identities=5%  Similarity=-0.130  Sum_probs=46.9

Q ss_pred             ccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH
Q 034553            5 CDCHNVKALYRRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQKSLKQLQAESNK   62 (91)
Q Consensus         5 ~~p~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~   62 (91)
                      +-|+.+..-.--|..++..|+|++|+..|+.+.+-.|..+-.+..+.-|-..+++..-
T Consensus        39 LrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~al~Dp~W   96 (153)
T TIGR02561        39 LRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALCLNAKGDAEW   96 (153)
T ss_pred             hCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHHhcCChHH
Confidence            4588888888889999999999999999999888777777777777777776655544

This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.

>PF12854 PPR_1: PPR repeat

Probab=81.36  E-value=4  Score=18.67  Aligned_cols=27  Identities=11%  Similarity=-0.064  Sum_probs=23.4

Q ss_pred             CHHHHHHHHHHHHHhCCHHHHHHHHHH
Q 034553            9 NVKALYRRAQVYMEIADLILAELDIKK   35 (91)
Q Consensus         9 ~~ka~~rrg~a~~~lg~~~~A~~~~~~   35 (91)
                      +.-.|.-.-.++.+.|+.++|.+.|++
T Consensus         6 d~~ty~~lI~~~Ck~G~~~~A~~l~~~   32 (34)
T PF12854_consen    6 DVVTYNTLIDGYCKAGRVDEAFELFDE   32 (34)
T ss_pred             cHhHHHHHHHHHHHCCCHHHHHHHHHh
Confidence            566788888999999999999998875

>smart00745 MIT Microtubule Interacting and Trafficking molecule domain

Probab=81.07  E-value=6.8  Score=21.16  Aligned_cols=28  Identities=36%  Similarity=0.103  Sum_probs=22.3

Q ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHHH
Q 034553           12 ALYRRAQVYMEIADLILAELDIKKAIEA   39 (91)
Q Consensus        12 a~~rrg~a~~~lg~~~~A~~~~~~al~l   39 (91)
                      .+..+|...-..|++++|+..|..|++.
T Consensus        10 ~li~~Av~~d~~g~~~eAl~~Y~~a~e~   37 (77)
T smart00745       10 ELISKALKADEAGDYEEALELYKKAIEY   37 (77)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            4566778888899999998888887774

>PF13041 PPR_2: PPR repeat family

Probab=80.90  E-value=5.1  Score=19.60  Aligned_cols=42  Identities=14%  Similarity=0.089  Sum_probs=31.4

Q ss_pred             CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH--CCCCHHHHHHH
Q 034553            9 NVKALYRRAQVYMEIADLILAELDIKKAIEA--DPQNREVKLLQ   50 (91)
Q Consensus         9 ~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l--~p~~~~~~~~l   50 (91)
                      ++-.|.-.-.++.+.|++++|.+.|++..+.  .|+.......+
T Consensus         2 ~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li   45 (50)
T PF13041_consen    2 DVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILI   45 (50)
T ss_pred             chHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence            3456667778899999999999999998884  57655444433

>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function

Probab=80.26  E-value=11  Score=26.12  Aligned_cols=55  Identities=11%  Similarity=-0.005  Sum_probs=46.4

Q ss_pred             CcccccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
Q 034553            1 MVLDCDCHNVKALYRRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQKSLKQ   55 (91)
Q Consensus         1 ~al~~~p~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~   55 (91)
                      +||+.+|++.+-+...=.....+.+-+.-..-.++++..+|++..++...-...+
T Consensus        56 rAL~~np~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~~~~~~LW~~yL~~~q  110 (321)
T PF08424_consen   56 RALKHNPDSERLLLGYLEEGEKVWDSEKLAKKWEELLFKNPGSPELWREYLDFRQ  110 (321)
T ss_pred             HHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHH
Confidence            4788899999999998888899999999999999999999998877666544433

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	91
1kt0_A	457	Structure Of The Large Fkbp-like Protein, Fkbp51, I		6e-07
1kt1_A	457	Structure Of The Large Fkbp-Like Protein, Fkbp51, I		1e-06
1qz2_A	336	Crystal Structure Of Fkbp52 C-Terminal Domain Compl		2e-06
1p5q_A	336	Crystal Structure Of Fkbp52 C-Terminal Domain Lengt		6e-06
1ihg_A	370	Bovine Cyclophilin 40, Monoclinic Form Length = 370		7e-05
3kd7_A	125	Designed Tpr Module (Ctpr390) In Complex With Its P		6e-04

>pdb|1KT0|A Chain A, Structure Of The Large Fkbp-like Protein, Fkbp51, Involved In Steroid Receptor Complexes Length = 457

Iteration: 1
 Score = 49.3 bits (116), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 24/78 (30%), Positives = 38/78 (48%)
Query: 3   LDCDCHNVKALYRRAQVYMEIADLILAELDIKKAIEADPQNREVXXXXXXXXXXXAESNK 62
           L  D  N K LYRR +  + + +   A+ D +K +E +PQN+              E N+
Sbjct: 344 LGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQKKAKEHNE 403
Query: 63  RDAKFYANMFARVTKDSS 80
           RD + YANMF +  +  +
Sbjct: 404 RDRRIYANMFKKFAEQDA 421

>pdb|1KT1|A Chain A, Structure Of The Large Fkbp-Like Protein, Fkbp51, Involved In Steroid Receptor Complexes Length = 457

Iteration: 1
 Score = 48.1 bits (113), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 24/78 (30%), Positives = 38/78 (48%)
Query: 3   LDCDCHNVKALYRRAQVYMEIADLILAELDIKKAIEADPQNREVXXXXXXXXXXXAESNK 62
           L  D  N K LYRR +  + + +   A+ D +K +E +PQN+              E N+
Sbjct: 344 LGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQIFMCQKKAKEHNE 403
Query: 63  RDAKFYANMFARVTKDSS 80
           RD + YANMF +  +  +
Sbjct: 404 RDRRTYANMFKKFAEQDA 421

>pdb|1QZ2|A Chain A, Crystal Structure Of Fkbp52 C-Terminal Domain Complex With The C-Terminal Peptide Meevd Of Hsp90 Length = 336

Iteration: 1
 Score = 47.4 bits (111), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 23/80 (28%), Positives = 39/80 (48%)
Query: 3   LDCDCHNVKALYRRAQVYMEIADLILAELDIKKAIEADPQNREVXXXXXXXXXXXAESNK 62
           L+ D +N K L+RR + ++ + D  LA  D +K ++  P N+                  
Sbjct: 223 LELDSNNEKGLFRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLA 282
Query: 63  RDAKFYANMFARVTKDSSVA 82
           R+ K YANMF R+ ++ + A
Sbjct: 283 REKKLYANMFERLAEEENKA 302

>pdb|1P5Q|A Chain A, Crystal Structure Of Fkbp52 C-Terminal Domain Length = 336

Iteration: 1
 Score = 45.8 bits (107), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 23/80 (28%), Positives = 38/80 (47%)
Query: 3   LDCDCHNVKALYRRAQVYMEIADLILAELDIKKAIEADPQNREVXXXXXXXXXXXAESNK 62
           L+ D +N K L RR + ++ + D  LA  D +K ++  P N+                  
Sbjct: 223 LELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLA 282
Query: 63  RDAKFYANMFARVTKDSSVA 82
           R+ K YANMF R+ ++ + A
Sbjct: 283 REKKLYANMFERLAEEENKA 302

>pdb|1IHG|A Chain A, Bovine Cyclophilin 40, Monoclinic Form Length = 370

Iteration: 1
 Score = 42.4 bits (98), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 23/71 (32%), Positives = 34/71 (47%)
Query: 3   LDCDCHNVKALYRRAQVYMEIADLILAELDIKKAIEADPQNREVXXXXXXXXXXXAESNK 62
           L+ D  N KALYRRAQ +  + +   A  D+KKA E  P+++ +                
Sbjct: 300 LEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKD 359
Query: 63  RDAKFYANMFA 73
           ++   YA MFA
Sbjct: 360 KEKAAYAKMFA 370

>pdb|3KD7|A Chain A, Designed Tpr Module (Ctpr390) In Complex With Its Peptide-Ligand (Hsp90 Peptide) Length = 125

Iteration: 1
 Score = 39.3 bits (90), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 18/42 (42%), Positives = 23/42 (54%)
Query: 2   VLDCDCHNVKALYRRAQVYMEIADLILAELDIKKAIEADPQN 43
            L+ D +N KA YRR   Y +  D   A  D +KA+E DP N
Sbjct: 69  ALELDPNNAKAWYRRGNAYYKQGDYQKAIEDYQKALELDPNN 110

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	91
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	8e-24
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	2e-19
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	4e-19
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	6e-18
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	4e-17
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	5e-14
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	3e-10
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	3e-08
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	6e-07
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	7e-07
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	7e-07
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	1e-06
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	1e-06
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	2e-06
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	6e-06
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	6e-06
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	7e-06
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	1e-04
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	1e-04
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	2e-04
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	2e-04
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	9e-04

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A Length = 457

 Score = 92.1 bits (228), Expect = 8e-24
 Identities = 25/83 (30%), Positives = 42/83 (50%)

Query: 2   VLDCDCHNVKALYRRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQKSLKQLQAESN 61
            L  D  N K LYRR +  + + +   A+ D +K +E +PQN+  +L     ++   E N
Sbjct: 343 ALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQKKAKEHN 402

Query: 62  KRDAKFYANMFARVTKDSSVATK 84
           +RD + YANMF +  +  +    
Sbjct: 403 ERDRRIYANMFKKFAEQDAKEEA 425

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} Length = 338

 Score = 79.3 bits (195), Expect = 2e-19
 Identities = 17/79 (21%), Positives = 38/79 (48%)

Query: 2   VLDCDCHNVKALYRRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQKSLKQLQAESN 61
           VL  +  N KAL+RR +   E+  +  A  D +KA +  P ++ ++   ++L + +    
Sbjct: 256 VLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALY 315

Query: 62  KRDAKFYANMFARVTKDSS 80
           ++  + Y  +F    +  +
Sbjct: 316 QKQKEMYKGIFKGKDEGGA 334

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A Length = 336

 Score = 78.4 bits (193), Expect = 4e-19
 Identities = 25/83 (30%), Positives = 41/83 (49%)

Query: 2   VLDCDCHNVKALYRRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQKSLKQLQAESN 61
            L+ D +N K L RR + ++ + D  LA  D +K ++  P N+  K      +Q      
Sbjct: 222 ALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQL 281

Query: 62  KRDAKFYANMFARVTKDSSVATK 84
            R+ K YANMF R+ ++ + A  
Sbjct: 282 AREKKLYANMFERLAEEENKAKA 304

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 Length = 198

 Score = 73.3 bits (180), Expect = 6e-18
 Identities = 21/77 (27%), Positives = 35/77 (45%)

Query: 2   VLDCDCHNVKALYRRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQKSLKQLQAESN 61
           VL  D +NVKALY+     M    L  A+ ++ KA   +P N +++   +       E+ 
Sbjct: 114 VLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNKLKEAR 173

Query: 62  KRDAKFYANMFARVTKD 78
           K+D   +  MF +    
Sbjct: 174 KKDKLTFGGMFDKGPLY 190

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} Length = 162

 Score = 70.1 bits (172), Expect = 4e-17
 Identities = 22/72 (30%), Positives = 32/72 (44%), Gaps = 1/72 (1%)

Query: 2   VLDCDCHNVKALYRRAQVYMEIADLILAELDIKKAIEADPQNRE-VKLLQKSLKQLQAES 60
           VL  +  N KAL+RRA+  +    L  AE D+K  +   P     V    K + + +AE 
Sbjct: 89  VLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVVAREMKIVTERRAEK 148

Query: 61  NKRDAKFYANMF 72
                  Y+ MF
Sbjct: 149 KADSRVTYSKMF 160

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A Length = 370

 Score = 64.4 bits (157), Expect = 5e-14
 Identities = 25/72 (34%), Positives = 38/72 (52%)

Query: 2   VLDCDCHNVKALYRRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQKSLKQLQAESN 61
            L+ D  N KALYRRAQ +  + +   A  D+KKA E  P+++ ++     +KQ      
Sbjct: 299 ALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQK 358

Query: 62  KRDAKFYANMFA 73
            ++   YA MFA
Sbjct: 359 DKEKAAYAKMFA 370

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 148

 Score = 52.0 bits (125), Expect = 3e-10
 Identities = 17/60 (28%), Positives = 36/60 (60%), Gaps = 3/60 (5%)

Query: 2   VLDCDCHNVKALYRRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQKSLKQLQAESN 61
            ++ D  +VKALYRR+Q   ++  L  A LD+++ +  +P+N+  +   ++L+ +   S+
Sbjct: 91  AIEKDGGDVKALYRRSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQ---EALRNISGPSS 147

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A Length = 166

 Score = 47.0 bits (112), Expect = 3e-08
 Identities = 12/64 (18%), Positives = 27/64 (42%)

Query: 3   LDCDCHNVKALYRRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQKSLKQLQAESNK 62
           ++ D   +K  YRRA   M +     A  D +  ++  P +++ K+  +   ++  +   
Sbjct: 74  IELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAF 133

Query: 63  RDAK 66
             A 
Sbjct: 134 ERAI 137

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} Length = 133

 Score = 43.0 bits (102), Expect = 6e-07
 Identities = 10/55 (18%), Positives = 20/55 (36%)

Query: 3   LDCDCHNVKALYRRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQKSLKQLQ 57
           +  +   +K   R+A     + D   A    +KA++ D   +E     +     Q
Sbjct: 77  IQLEPTFIKGYTRKAAALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQ 131

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} Length = 126

 Score = 43.0 bits (102), Expect = 7e-07
 Identities = 10/61 (16%), Positives = 24/61 (39%)

Query: 3   LDCDCHNVKALYRRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQKSLKQLQAESNK 62
           ++ D + V+A  R+A   + + +   A   +  A   D +       ++  +     S +
Sbjct: 65  IEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKASQQ 124

Query: 63  R 63
           R
Sbjct: 125 R 125

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 Length = 131

 Score = 43.0 bits (102), Expect = 7e-07
 Identities = 15/58 (25%), Positives = 21/58 (36%)

Query: 3   LDCDCHNVKALYRRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQKSLKQLQAES 60
           +  D    KA  R       +   + A    KKA+E DP N   K   K  +    E+
Sbjct: 73  ICIDPAYSKAYGRMGLALSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLREA 130

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 Length = 477

 Score = 43.9 bits (104), Expect = 1e-06
 Identities = 12/64 (18%), Positives = 27/64 (42%)

Query: 3   LDCDCHNVKALYRRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQKSLKQLQAESNK 62
           ++ D   +K  YRRA   M +     A  D +  ++  P +++ K+  +   ++  +   
Sbjct: 67  IELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAF 126

Query: 63  RDAK 66
             A 
Sbjct: 127 ERAI 130

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} Length = 126

 Score = 42.2 bits (100), Expect = 1e-06
 Identities = 10/53 (18%), Positives = 24/53 (45%)

Query: 3   LDCDCHNVKALYRRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQKSLKQ 55
           +  D   +K   R+A   + + +   A+   + A++ DP N E +   ++  +
Sbjct: 74  IRLDSKFIKGYIRKAACLVAMREWSKAQRAYEDALQVDPSNEEAREGVRNCLR 126

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* Length = 137

 Score = 42.3 bits (100), Expect = 2e-06
 Identities = 11/63 (17%), Positives = 26/63 (41%), Gaps = 5/63 (7%)

Query: 3   LDCDCHNVKALYRRAQVYMEIADLILAELDIKKAIEADPQN-----REVKLLQKSLKQLQ 57
           L+ D  +VKA +   Q  +E+     A  ++++A     +       ++    +  K+ +
Sbjct: 70  LELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAKKKR 129

Query: 58  AES 60
             S
Sbjct: 130 WNS 132

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} Length = 164

 Score = 40.9 bits (96), Expect = 6e-06
 Identities = 14/66 (21%), Positives = 26/66 (39%), Gaps = 2/66 (3%)

Query: 3   LDCDCHNVKALYRRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQ--KSLKQLQAES 60
              D    KA  R      ++AD   A+   +K IEA+       + +  ++ K+   E+
Sbjct: 72  TVVDPKYSKAWSRLGLARFDMADYKGAKEAYEKGIEAEGNGGSDAMKRGLETTKRKIEEA 131

Query: 61  NKRDAK 66
           N+    
Sbjct: 132 NRGAEP 137

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 Length = 118

 Score = 40.2 bits (95), Expect = 6e-06
 Identities = 7/53 (13%), Positives = 22/53 (41%)

Query: 3   LDCDCHNVKALYRRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQKSLKQ 55
           +D      K   R+A     +     A+   ++ ++ +  N ++K   ++++ 
Sbjct: 65  VDLKPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNMEA 117

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 Length = 281

 Score = 41.4 bits (97), Expect = 7e-06
 Identities = 11/64 (17%), Positives = 25/64 (39%)

Query: 3   LDCDCHNVKALYRRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQKSLKQLQAESNK 62
           L+ D  +VKA +   Q  +E+     A  ++++A     + R             A+  +
Sbjct: 65  LELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAKKKR 124

Query: 63  RDAK 66
            ++ 
Sbjct: 125 WNSI 128

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 37.7 bits (88), Expect = 1e-04
 Identities = 16/60 (26%), Positives = 29/60 (48%)

Query: 8   HNVKALYRRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQKSLKQLQAESNKRDAKF 67
            NV AL  RA+ Y+       A  D + A E +  +++++   +  ++L  +S KRD   
Sbjct: 327 DNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRLLKQSQKRDYYK 386

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 37.7 bits (88), Expect = 1e-04
 Identities = 10/64 (15%), Positives = 29/64 (45%)

Query: 9   NVKALYRRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQKSLKQLQAESNKRDAKFY 68
           N +A Y+ + +Y ++ D  L+  ++++ ++ D  ++      K +K+L       +    
Sbjct: 210 NTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIR 269

Query: 69  ANMF 72
              +
Sbjct: 270 DGRY 273

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score = 37.3 bits (87), Expect = 2e-04
 Identities = 10/71 (14%), Positives = 29/71 (40%)

Query: 2   VLDCDCHNVKALYRRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQKSLKQLQAESN 61
                  N +A Y+ + +Y ++ D  L+  ++++ ++ D  ++      K +K+L     
Sbjct: 180 ASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIE 239

Query: 62  KRDAKFYANMF 72
             +       +
Sbjct: 240 SAEELIRDGRY 250

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score = 36.9 bits (86), Expect = 2e-04
 Identities = 16/57 (28%), Positives = 30/57 (52%), Gaps = 1/57 (1%)

Query: 2   VLDCDCHNVKALYRRAQVYMEIADLILAELDIKKAIEADPQNREVK-LLQKSLKQLQ 57
           VL  +  NV AL  RA+ Y+       A  D + A E +  +++++  L+K+ + L+
Sbjct: 298 VLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNENDQQIREGLEKAQRLLK 354

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score = 35.3 bits (82), Expect = 9e-04
 Identities = 12/51 (23%), Positives = 23/51 (45%)

Query: 8   HNVKALYRRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQKSLKQLQA 58
               A  +R  + ++   L  AE D KK ++++P  +E K  +  L +   
Sbjct: 69  DFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADE 119

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	91
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	99.61
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	99.43
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	99.43
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	99.41
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	99.36
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	99.33
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	99.31
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	99.28
4ga2_A	150	E3 SUMO-protein ligase ranbp2; TPR motif, nuclear	99.26
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	99.23
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	99.22
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	99.21
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	99.19
4ga2_A	150	E3 SUMO-protein ligase ranbp2; TPR motif, nuclear	99.16
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	99.16
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	99.15
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	99.15
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	99.1
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	99.08
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	99.08
3k9i_A	117	BH0479 protein; putative protein binding protein,	99.07
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	99.07
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	99.06
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	99.05
1zu2_A	158	Mitochondrial import receptor subunit TOM20-3; TPR	99.04
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	99.04
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	99.02
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	99.02
2kat_A	115	Uncharacterized protein; NESG, structure, structur	99.02
4gyw_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	99.01
4gyw_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	98.98
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	98.96
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	98.96
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	98.96
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	98.96
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	98.95
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	98.95
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	98.95
1zu2_A	158	Mitochondrial import receptor subunit TOM20-3; TPR	98.94
3vtx_A	184	MAMA; tetratricopeptide repeats (TPR) containing p	98.94
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	98.94
2l6j_A	111	TPR repeat-containing protein associated with HSP;	98.92
3vtx_A	184	MAMA; tetratricopeptide repeats (TPR) containing p	98.91
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	98.9
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	98.89
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	98.85
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	98.85
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	98.84
4i17_A	228	Hypothetical protein; TPR repeats protein, structu	98.83
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	98.82
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	98.82
2xev_A	129	YBGF; tetratricopeptide, alpha-helical, metal bind	98.82
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	98.81
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	98.79
1pc2_A	152	Mitochondria fission protein; unknown function; NM	98.79
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	98.79
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	98.78
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	98.78
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	98.78
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	98.77
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	98.77
4i17_A	228	Hypothetical protein; TPR repeats protein, structu	98.76
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	98.76
3k9i_A	117	BH0479 protein; putative protein binding protein,	98.75
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	98.74
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	98.74
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	98.73
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	98.73
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	98.73
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	98.72
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	98.72
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	98.72
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	98.72
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	98.68
2l6j_A	111	TPR repeat-containing protein associated with HSP;	98.68
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	98.68
3bee_A	93	Putative YFRE protein; putaive YFRE protein, struc	98.67
2r5s_A	176	Uncharacterized protein VP0806; APC090868.1, vibri	98.67
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	98.66
2xev_A	129	YBGF; tetratricopeptide, alpha-helical, metal bind	98.65
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	98.65
2r5s_A	176	Uncharacterized protein VP0806; APC090868.1, vibri	98.65
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	98.63
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	98.63
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	98.63
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	98.63
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	98.62
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	98.62
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	98.62
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	98.61
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	98.61
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	98.59
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	98.58
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	98.57
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	98.57
3bee_A	93	Putative YFRE protein; putaive YFRE protein, struc	98.57
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	98.56
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	98.56
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	98.56
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	98.56
2ond_A	308	Cleavage stimulation factor 77 kDa subunit; HAT do	98.56
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	98.55
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	98.55
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	98.55
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	98.55
2kat_A	115	Uncharacterized protein; NESG, structure, structur	98.54
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	98.54
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	98.53
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	98.52
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	98.52
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	98.52
3qky_A	261	Outer membrane assembly lipoprotein YFIO; membrane	98.51
3dra_A	306	Protein farnesyltransferase/geranylgeranyltransfer	98.51
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	98.51
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	98.5
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	98.49
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	98.49
1nzn_A	126	CGI-135 protein, fission protein FIS1P; TPR, unkno	98.48
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	98.48
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	98.48
2ond_A	308	Cleavage stimulation factor 77 kDa subunit; HAT do	98.46
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	98.45
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	98.45
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	98.45
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	98.45
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	98.44
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	98.44
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	98.43
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	98.43
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	98.42
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	98.42
3qky_A	261	Outer membrane assembly lipoprotein YFIO; membrane	98.4
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	98.37
2gw1_A	514	Mitochondrial precursor proteins import receptor;	98.37
3q7a_A	349	Farnesyltransferase alpha subunit; protein prenylt	98.36
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	98.35
3o48_A	134	Mitochondria fission 1 protein; tetratricopeptide	98.34
2v5f_A	104	Prolyl 4-hydroxylase subunit alpha-1; endoplasmic	98.32
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	98.32
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	98.31
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	98.31
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	98.31
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	98.29
1y8m_A	144	FIS1; mitochondria, unknown function; NMR {Sacchar	98.25
3u4t_A	272	TPR repeat-containing protein; structural genomics	98.25
2yhc_A	225	BAMD, UPF0169 lipoprotein YFIO; essential BAM comp	98.25
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	98.24
3dss_A	331	Geranylgeranyl transferase type-2 subunit alpha; p	98.21
3dss_A	331	Geranylgeranyl transferase type-2 subunit alpha; p	98.19
3u4t_A	272	TPR repeat-containing protein; structural genomics	98.16
4g1t_A	472	Interferon-induced protein with tetratricopeptide	98.16
3dra_A	306	Protein farnesyltransferase/geranylgeranyltransfer	98.12
3q7a_A	349	Farnesyltransferase alpha subunit; protein prenylt	98.12
2gw1_A	514	Mitochondrial precursor proteins import receptor;	98.1
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	98.06
2yhc_A	225	BAMD, UPF0169 lipoprotein YFIO; essential BAM comp	98.05
2ooe_A	530	Cleavage stimulation factor 77 kDa subunit; HAT do	98.02
2v5f_A	104	Prolyl 4-hydroxylase subunit alpha-1; endoplasmic	97.97
2ooe_A	530	Cleavage stimulation factor 77 kDa subunit; HAT do	97.94
4g1t_A	472	Interferon-induced protein with tetratricopeptide	97.89
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	97.73
1ouv_A	273	Conserved hypothetical secreted protein; TPR repea	97.68
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	97.6
3u64_A	301	Protein TP_0956; tetratrico peptide repeat, protei	97.53
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	97.51
4f3v_A	282	ESX-1 secretion system protein ECCA1; tetratricope	97.5
3u64_A	301	Protein TP_0956; tetratrico peptide repeat, protei	97.5
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	97.44
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	97.39
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	97.36
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	97.29
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	97.27
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	97.25
3n71_A	490	Histone lysine methyltransferase SMYD1; heart deve	97.2
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	97.12
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	97.09
1ouv_A	273	Conserved hypothetical secreted protein; TPR repea	97.08
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	97.05
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	97.04
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	97.0
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	96.91
3rjv_A	212	Putative SEL1 repeat protein; alpha-alpha superhel	96.9
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	96.86
2qfc_A	293	PLCR protein; TPR, HTH, transcription regulation;	96.81
3u3w_A	293	Transcriptional activator PLCR protein; ternary co	96.75
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	96.73
4f3v_A	282	ESX-1 secretion system protein ECCA1; tetratricope	96.72
3rjv_A	212	Putative SEL1 repeat protein; alpha-alpha superhel	96.71
1pc2_A	152	Mitochondria fission protein; unknown function; NM	96.69
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	96.59
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	96.59
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	96.58
2qfc_A	293	PLCR protein; TPR, HTH, transcription regulation;	96.56
3mv2_B	310	Coatomer subunit epsilon; vesicular membrane coat	96.52
2xm6_A	490	Protein corresponding to locus C5321 from CFT073 s	96.48
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	96.41
3qww_A	433	SET and MYND domain-containing protein 2; methyltr	96.4
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	96.35
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	96.27
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	96.15
1klx_A	138	Cysteine rich protein B; structural genomics, heli	96.15
3n71_A	490	Histone lysine methyltransferase SMYD1; heart deve	95.98
3qwp_A	429	SET and MYND domain-containing protein 3; SMYD3,SE	95.98
3qww_A	433	SET and MYND domain-containing protein 2; methyltr	95.83
3qwp_A	429	SET and MYND domain-containing protein 3; SMYD3,SE	95.66
3u3w_A	293	Transcriptional activator PLCR protein; ternary co	95.65
4e6h_A	679	MRNA 3'-END-processing protein RNA14; HAT domain,	95.61
3e4b_A	452	ALGK; tetratricopeptide repeat, superhelix, algina	95.19
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	94.99
2xm6_A	490	Protein corresponding to locus C5321 from CFT073 s	94.76
1klx_A	138	Cysteine rich protein B; structural genomics, heli	94.67
3mv2_B	310	Coatomer subunit epsilon; vesicular membrane coat	94.55
3ax2_A	73	Mitochondrial import receptor subunit TOM20 homol;	94.49
4b4t_Q	434	26S proteasome regulatory subunit RPN6; hydrolase,	94.11
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	94.1
4e6h_A	679	MRNA 3'-END-processing protein RNA14; HAT domain,	93.95
2cfu_A	658	SDSA1; SDS-hydrolase, lactamase, hydrolase; HET: 1	93.79
2uy1_A	493	Cleavage stimulation factor 77; RNA-binding protei	93.17
2ff4_A	388	Probable regulatory protein EMBR; winged-helix, te	93.08
1zbp_A	273	Hypothetical protein VPA1032; alpha-beta protein,	92.89
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	92.56
3e4b_A	452	ALGK; tetratricopeptide repeat, superhelix, algina	92.55
4b4t_Q	434	26S proteasome regulatory subunit RPN6; hydrolase,	92.48
1om2_A	95	Protein (mitochondrial import receptor subunit TOM	92.46
2crb_A	97	Nuclear receptor binding factor 2; NRBF-2, MIT dom	91.5
3ffl_A	167	Anaphase-promoting complex subunit 7; tetratricope	91.16
4gns_B	754	Protein CSD3, chitin biosynthesis protein CHS6; FN	90.8
1b89_A	449	Protein (clathrin heavy chain); triskelion, coated	90.59
1b89_A	449	Protein (clathrin heavy chain); triskelion, coated	88.34
4a5x_A	86	MITD1, MIT domain-containing protein 1; protein tr	88.29
4h7y_A	161	Dual specificity protein kinase TTK; mitotic check	87.71
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	87.44
1ya0_A	497	SMG-7 transcript variant 2; alpha-helical repeat,	87.22
2w2u_A	83	Hypothetical P60 katanin; hydrolase transport comp	86.77
1nzn_A	126	CGI-135 protein, fission protein FIS1P; TPR, unkno	86.14
2v6y_A	83	AAA family ATPase, P60 katanin; MIT, VPS4, archaea	85.06
3t5x_A	203	PCI domain-containing protein 2; PCI, mRNA nuclear	84.79
2yhe_A	668	SEC-alkyl sulfatase; hydrolase, inversion, metallo	83.84
1zbp_A	273	Hypothetical protein VPA1032; alpha-beta protein,	83.12
2g0u_A	92	Type III secretion system needle protein; helix-tu	82.51
2rpa_A	78	Katanin P60 ATPase-containing subunit A1; AAA ATPa	80.52
4gns_B	754	Protein CSD3, chitin biosynthesis protein CHS6; FN	80.29

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}

Probab=99.61  E-value=3.3e-16  Score=95.42  Aligned_cols=72  Identities=31%  Similarity=0.335  Sum_probs=62.8

Q ss_pred             cccccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 034553            2 VLDCDCHNVKALYRRAQVYMEIADLILAELDIKKAIEADPQNR-EVKLLQKSLKQLQAESNKRDAKFYANMFA   73 (91)
Q Consensus         2 al~~~p~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~mf~   73 (91)
                      ||+++|+++++|+++|.++..+|++++|+.+|+++++++|++. .+...+..+...+++..++++..|++||+
T Consensus        89 al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~l~~~~~~~~~~~~~~k~~~~~~f~  161 (162)
T 3rkv_A           89 VLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVVAREMKIVTERRAEKKADSRVTYSKMFQ  161 (162)
T ss_dssp             HHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHTTSSCC-------
T ss_pred             HHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            6889999999999999999999999999999999999999999 88999999999999999999899999996

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A

Probab=99.43  E-value=2.5e-13  Score=95.44  Aligned_cols=78  Identities=32%  Similarity=0.521  Sum_probs=64.7

Q ss_pred             CcccccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCC
Q 034553            1 MVLDCDCHNVKALYRRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQKSLKQLQAESNKRDAKFYANMFARVTKD   78 (91)
Q Consensus         1 ~al~~~p~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~mf~~~~~~   78 (91)
                      +||+++|+++++|+++|.+++.+|++++|+.+|+++++++|++..+...+..+...++++.++++..+++||.++...
T Consensus       342 ~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~f~k~~~~  419 (457)
T 1kt0_A          342 KALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQKKAKEHNERDRRIYANMFKKFAEQ  419 (457)
T ss_dssp             HHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHHHHHHHHHHHHHHHHHC-------
T ss_pred             HHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhc
Confidence            368899999999999999999999999999999999999999999999999999999999999999999999887544

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A

Probab=99.43  E-value=7.8e-13  Score=89.56  Aligned_cols=76  Identities=32%  Similarity=0.474  Sum_probs=72.5

Q ss_pred             cccccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccC
Q 034553            2 VLDCDCHNVKALYRRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQKSLKQLQAESNKRDAKFYANMFARVTK   77 (91)
Q Consensus         2 al~~~p~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~mf~~~~~   77 (91)
                      ||+++|+++++|+++|.++..+|++++|+.+|+++++++|++..+...+..+...+++..++++..|++||+++..
T Consensus       222 al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~  297 (336)
T 1p5q_A          222 ALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAREKKLYANMFERLAE  297 (336)
T ss_dssp             HHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence            6889999999999999999999999999999999999999999999999999999999999999999999988653

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}

Probab=99.41  E-value=1.1e-12  Score=77.79  Aligned_cols=85  Identities=14%  Similarity=0.081  Sum_probs=70.9

Q ss_pred             cccccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCchh
Q 034553            2 VLDCDCHNVKALYRRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQKSLKQLQAESNKRDAKFYANMFARVTKDSSV   81 (91)
Q Consensus         2 al~~~p~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~mf~~~~~~~~~   81 (91)
                      +|+++|.++.+|+.+|.++..+|++++|+.+|+++++++|++..+...+..+...+++..++. ..+++.....+...++
T Consensus        39 al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~-~~~~~al~l~P~~~~a  117 (126)
T 4gco_A           39 AVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRKAACLVAMREWSKAQ-RAYEDALQVDPSNEEA  117 (126)
T ss_dssp             HHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH-HHHHHHHHHCTTCHHH
T ss_pred             HHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCCCHHHHH-HHHHHHHHHCcCCHHH
Confidence            678889999999999999999999999999999999999999888888888888888887774 4678888877777777


Q ss_pred             hhhhhh
Q 034553           82 ATKVGY   87 (91)
Q Consensus        82 ~~~~g~   87 (91)
                      ...++.
T Consensus       118 ~~~l~~  123 (126)
T 4gco_A          118 REGVRN  123 (126)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            766654

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A

Probab=99.36  E-value=1.5e-12  Score=89.64  Aligned_cols=73  Identities=34%  Similarity=0.448  Sum_probs=65.2

Q ss_pred             CcccccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 034553            1 MVLDCDCHNVKALYRRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQKSLKQLQAESNKRDAKFYANMFA   73 (91)
Q Consensus         1 ~al~~~p~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~mf~   73 (91)
                      +||+++|+++++|+++|.++..+|++++|+.+|+++++++|++..+...+..+...+++..++++..+++||+
T Consensus       298 ~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~~~~~~a~k~~~~kmf~  370 (370)
T 1ihg_A          298 EALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDKEKAAYAKMFA  370 (370)
T ss_dssp             HHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHCCC-----
T ss_pred             HHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence            3688999999999999999999999999999999999999999999999999999999999998888899984

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1

Probab=99.33  E-value=4.1e-12  Score=79.30  Aligned_cols=74  Identities=28%  Similarity=0.321  Sum_probs=59.2

Q ss_pred             cccccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 034553            2 VLDCDCHNVKALYRRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQKSLKQLQAESNKRDAKFYANMFARV   75 (91)
Q Consensus         2 al~~~p~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~mf~~~   75 (91)
                      +++++|+++++++++|.++..+|++++|+..|+++++++|++..+...+..+...+++..++++..+++||+..
T Consensus       114 al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~f~~~  187 (198)
T 2fbn_A          114 VLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNKLKEARKKDKLTFGGMFDKG  187 (198)
T ss_dssp             HHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHC-------------
T ss_pred             HHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence            57889999999999999999999999999999999999999999999999999999999999888899999873

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A

Probab=99.31  E-value=8.1e-12  Score=76.63  Aligned_cols=85  Identities=15%  Similarity=0.101  Sum_probs=63.7

Q ss_pred             cccccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCchh
Q 034553            2 VLDCDCHNVKALYRRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQKSLKQLQAESNKRDAKFYANMFARVTKDSSV   81 (91)
Q Consensus         2 al~~~p~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~mf~~~~~~~~~   81 (91)
                      +++++|+++.+++.+|.+++.+|++++|+..|++++.++|++..++..+..+....+++.++. ..|.+.....+.....
T Consensus        28 al~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai-~~~~~al~l~P~~~~~  106 (151)
T 3gyz_A           28 INAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAA-DLYAVAFALGKNDYTP  106 (151)
T ss_dssp             GCCSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH-HHHHHHHHHSSSCCHH
T ss_pred             HhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHH-HHHHHHHhhCCCCcHH
Confidence            677788888888888888888888888888888888888888888888888877777777764 3567777766666555


Q ss_pred             hhhhhh
Q 034553           82 ATKVGY   87 (91)
Q Consensus        82 ~~~~g~   87 (91)
                      ..++|.
T Consensus       107 ~~~lg~  112 (151)
T 3gyz_A          107 VFHTGQ  112 (151)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            555553

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8

Probab=99.28  E-value=6.2e-13  Score=82.96  Aligned_cols=61  Identities=13%  Similarity=0.073  Sum_probs=56.6

Q ss_pred             ccccCCCHHHH----HHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
Q 034553            3 LDCDCHNVKAL----YRRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQKSLKQLQAESNKR   63 (91)
Q Consensus         3 l~~~p~~~ka~----~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~   63 (91)
                      ++++|++.++|    |++|.++..+|++++|+.+|+++++++|++..+...+..+++.+++..++
T Consensus        91 ~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~~~~~~~~~~~~~~~~~k  155 (159)
T 2hr2_A           91 GELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGETPGKERMMEVAIDRIAQ  155 (159)
T ss_dssp             CCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSCCTTHHHHHHHHHHHHHH
T ss_pred             ccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHH
Confidence            44599999999    99999999999999999999999999999999999999999998887664

>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*

Probab=99.26  E-value=1.1e-11  Score=75.11  Aligned_cols=80  Identities=13%  Similarity=0.081  Sum_probs=53.6

Q ss_pred             cccccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCchh
Q 034553            2 VLDCDCHNVKALYRRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQKSLKQLQAESNKRDAKFYANMFARVTKDSSV   81 (91)
Q Consensus         2 al~~~p~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~mf~~~~~~~~~   81 (91)
                      +|+++|+++.+|+.+|.++..+|++++|+..|+++++++|++..+...+..+....+...++-...+.+.....+....+
T Consensus        57 al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~  136 (150)
T 4ga2_A           57 YINVQERDPKAHRFLGLLYELEENTDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAV  136 (150)
T ss_dssp             HHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHH
T ss_pred             HHHhCCCCHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHH
Confidence            56777777777777777777777777777777777777777777777777776666554433232335555554444333

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1

Probab=99.23  E-value=1.1e-10  Score=68.38  Aligned_cols=74  Identities=14%  Similarity=-0.010  Sum_probs=64.6

Q ss_pred             cccccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccc
Q 034553            2 VLDCDCHNVKALYRRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQKSLKQLQAESNKRDAKFYANMFARVT   76 (91)
Q Consensus         2 al~~~p~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~mf~~~~   76 (91)
                      +|+++|+++.+|+.+|.++..+|++++|+..|+++++++|++..+...+..+....++..++. ..+.+.....+
T Consensus        43 al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~g~~~~A~-~~~~~al~~~P  116 (121)
T 1hxi_A           43 VCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNANAAL-ASLRAWLLSQP  116 (121)
T ss_dssp             HHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHH-HHHHHHHC---
T ss_pred             HHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHH-HHHHHHHHhCc
Confidence            678899999999999999999999999999999999999999999999999999998888774 35676665543

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}

Probab=99.22  E-value=2.2e-12  Score=87.53  Aligned_cols=76  Identities=22%  Similarity=0.375  Sum_probs=36.1

Q ss_pred             cccccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccC
Q 034553            2 VLDCDCHNVKALYRRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQKSLKQLQAESNKRDAKFYANMFARVTK   77 (91)
Q Consensus         2 al~~~p~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~mf~~~~~   77 (91)
                      +|+++|+++++|+++|.+++.+|++++|+.+|+++++++|++..+...+..+........++.+..|++||+..+.
T Consensus       256 al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a~~~~~~~l~~~p~  331 (338)
T 2if4_A          256 VLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQKEMYKGIFKGKDE  331 (338)
T ss_dssp             HHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC---------------------------------------
T ss_pred             HHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCC
Confidence            6789999999999999999999999999999999999999999999999999888877777778899999988654

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}

Probab=99.21  E-value=6.8e-11  Score=69.89  Aligned_cols=84  Identities=11%  Similarity=-0.021  Sum_probs=70.6

Q ss_pred             cccccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCchh
Q 034553            2 VLDCDCHNVKALYRRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQKSLKQLQAESNKRDAKFYANMFARVTKDSSV   81 (91)
Q Consensus         2 al~~~p~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~mf~~~~~~~~~   81 (91)
                      +..+||+.+.+|..+|.+++..|+|++|+..|+++++++|++..+...+..+...+++..++.. .+.+.....+.....
T Consensus         5 ~a~inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~-~~~~al~~~p~~~~a   83 (126)
T 4gco_A            5 LAYINPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALD-DCDTCIRLDSKFIKG   83 (126)
T ss_dssp             --CCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH-HHHHHHHHCTTCHHH
T ss_pred             HHHHCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHH-HHHHHHHhhhhhhHH
Confidence            4578999999999999999999999999999999999999999999999999999998888744 567777666555555


Q ss_pred             hhhhh
Q 034553           82 ATKVG   86 (91)
Q Consensus        82 ~~~~g   86 (91)
                      ...+|
T Consensus        84 ~~~lg   88 (126)
T 4gco_A           84 YIRKA   88 (126)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            54444

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A

Probab=99.19  E-value=5.1e-11  Score=73.00  Aligned_cols=74  Identities=11%  Similarity=-0.007  Sum_probs=67.0

Q ss_pred             cccccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccc
Q 034553            2 VLDCDCHNVKALYRRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQKSLKQLQAESNKRDAKFYANMFARVT   76 (91)
Q Consensus         2 al~~~p~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~mf~~~~   76 (91)
                      +++++|+++.+|+.+|.++..+|+|++|+..|+++++++|+++.+...+..+...+++..++.. .+.+.....+
T Consensus        62 al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~lg~~~~~lg~~~eA~~-~~~~al~l~~  135 (151)
T 3gyz_A           62 LCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFHTGQCQLRLKAPLKAKE-CFELVIQHSN  135 (151)
T ss_dssp             HHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHHHHHHHHHTTCHHHHHH-HHHHHHHHCC
T ss_pred             HHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHH-HHHHHHHhCC
Confidence            6789999999999999999999999999999999999999999999999999999999988744 5777766643

>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*

Probab=99.16  E-value=5.8e-11  Score=71.84  Aligned_cols=86  Identities=14%  Similarity=0.134  Sum_probs=76.5

Q ss_pred             cccccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCchh
Q 034553            2 VLDCDCHNVKALYRRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQKSLKQLQAESNKRDAKFYANMFARVTKDSSV   81 (91)
Q Consensus         2 al~~~p~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~mf~~~~~~~~~   81 (91)
                      ++..+|+++.++|.+|.+|+.+|+|++|+..|+++++++|++..+...+..+....++..++. ..+++.....+....+
T Consensus        23 a~~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~-~~~~~al~~~p~~~~~  101 (150)
T 4ga2_A           23 STPSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEENTDKAV-ECYRRSVELNPTQKDL  101 (150)
T ss_dssp             HSCSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH-HHHHHHHHHCTTCHHH
T ss_pred             hcccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCchHHHH-HHHHHHHHhCCCCHHH
Confidence            567889999999999999999999999999999999999999999999999999999988874 4688888887777777


Q ss_pred             hhhhhhc
Q 034553           82 ATKVGYF   88 (91)
Q Consensus        82 ~~~~g~f   88 (91)
                      ..++|..
T Consensus       102 ~~~la~~  108 (150)
T 4ga2_A          102 VLKIAEL  108 (150)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            7777754

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}

Probab=99.16  E-value=1.3e-10  Score=67.44  Aligned_cols=73  Identities=15%  Similarity=0.105  Sum_probs=64.8

Q ss_pred             cccccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 034553            2 VLDCDCHNVKALYRRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQKSLKQLQAESNKRDAKFYANMFARV   75 (91)
Q Consensus         2 al~~~p~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~mf~~~   75 (91)
                      +|+++|+++.+|+.+|.++..+|++++|+..|+++++++|++..+...+..+...+++..++. ..+.+.....
T Consensus        30 al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~-~~~~~al~~~  102 (126)
T 3upv_A           30 MIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASAL-ETLDAARTKD  102 (126)
T ss_dssp             HHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH-HHHHHHHHHH
T ss_pred             HHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhCHHHHH-HHHHHHHHhC
Confidence            678899999999999999999999999999999999999999999999999999888887764 3566666654

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}

Probab=99.15  E-value=4.7e-10  Score=71.22  Aligned_cols=85  Identities=11%  Similarity=0.017  Sum_probs=72.5

Q ss_pred             cccccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH-----------HHHHHHHHHHHHH
Q 034553            2 VLDCDCHNVKALYRRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQKSLKQLQ-----------AESNKRDAKFYAN   70 (91)
Q Consensus         2 al~~~p~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~-----------~~~~~~~~~~~~~   70 (91)
                      +|+++|+++.+++.+|.++..+|++++|+..|+++++++|++..+...+..+....           ++..++. ..+.+
T Consensus        31 al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~-~~~~~  109 (217)
T 2pl2_A           31 ALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVARTPRYLGGYMVLSEAYVALYRQAEDRERGKGYLEQAL-SVLKD  109 (217)
T ss_dssp             HHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHH-HHHHH
T ss_pred             HHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhhhhhhcccccCHHHHH-HHHHH
Confidence            67899999999999999999999999999999999999999999999999999888           7777764 45777


Q ss_pred             hhhcccCCchhhhhhhh
Q 034553           71 MFARVTKDSSVATKVGY   87 (91)
Q Consensus        71 mf~~~~~~~~~~~~~g~   87 (91)
                      .....+........+|.
T Consensus       110 al~~~P~~~~~~~~lg~  126 (217)
T 2pl2_A          110 AERVNPRYAPLHLQRGL  126 (217)
T ss_dssp             HHHHCTTCHHHHHHHHH
T ss_pred             HHHhCcccHHHHHHHHH
Confidence            77766665555555554

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}

Probab=99.15  E-value=7.5e-11  Score=74.52  Aligned_cols=52  Identities=15%  Similarity=0.049  Sum_probs=25.7

Q ss_pred             ccccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Q 034553            3 LDCDCHNVKALYRRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQKSLK   54 (91)
Q Consensus         3 l~~~p~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~~~~~l~~~~   54 (91)
                      |+++|+++.+|+.+|.++..+|++++|+..|+++++++|++..+...+..+.
T Consensus        81 l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~  132 (208)
T 3urz_A           81 LQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYY  132 (208)
T ss_dssp             HHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence            3444555555555555555555555555555555555555544444444443

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}

Probab=99.10  E-value=3.6e-10  Score=68.50  Aligned_cols=78  Identities=18%  Similarity=0.049  Sum_probs=63.4

Q ss_pred             cccccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCch
Q 034553            2 VLDCDCHNVKALYRRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQKSLKQLQAESNKRDAKFYANMFARVTKDSS   80 (91)
Q Consensus         2 al~~~p~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~mf~~~~~~~~   80 (91)
                      +|+++|+++.+|+.+|.+++.+|++++|+..|+++++++|++..+...+..+...+++..++. ..+.+.+...+....
T Consensus        37 al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~-~~~~~al~~~p~~~~  114 (164)
T 3sz7_A           37 ALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLARFDMADYKGAK-EAYEKGIEAEGNGGS  114 (164)
T ss_dssp             HHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH-HHHHHHHHHHSSSCC
T ss_pred             HHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHH-HHHHHHHHhCCCchH
Confidence            577889999999999999999999999999999999999999888888888888888877764 356666666554433

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*

Probab=99.08  E-value=3.4e-10  Score=68.42  Aligned_cols=72  Identities=7%  Similarity=-0.109  Sum_probs=41.1

Q ss_pred             cccccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 034553            2 VLDCDCHNVKALYRRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQKSLKQLQAESNKRDAKFYANMFAR   74 (91)
Q Consensus         2 al~~~p~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~mf~~   74 (91)
                      ++.++|+++.+|+.+|.++..+|++++|+..|++++.++|++..+...+..+...+++..++. ..+.+....
T Consensus        47 al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~~A~-~~~~~al~~  118 (148)
T 2vgx_A           47 LCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECLLQXGELAEAE-SGLFLAQEL  118 (148)
T ss_dssp             HHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHH-HHHHHHHHH
T ss_pred             HHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHcCCHHHHH-HHHHHHHHH
Confidence            345556666666666666666666666666666666666666666666665555555555543 234444444

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A

Probab=99.08  E-value=7.5e-10  Score=65.89  Aligned_cols=71  Identities=6%  Similarity=-0.098  Sum_probs=38.9

Q ss_pred             ccccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 034553            3 LDCDCHNVKALYRRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQKSLKQLQAESNKRDAKFYANMFAR   74 (91)
Q Consensus         3 l~~~p~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~mf~~   74 (91)
                      +.++|+++.+|+.+|.++..+|++++|+..|++++.++|++..+...+..+...+++..++.. .+.+....
T Consensus        45 l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~-~~~~al~~  115 (142)
T 2xcb_A           45 CMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECHLQLGDLDGAES-GFYSARAL  115 (142)
T ss_dssp             HHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHH-HHHHHHHH
T ss_pred             HHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHH-HHHHHHHh
Confidence            445555555555555555555555555555555555555555555555555555555554422 34444433

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}

Probab=99.07  E-value=4.7e-10  Score=64.76  Aligned_cols=79  Identities=6%  Similarity=0.140  Sum_probs=67.9

Q ss_pred             cccc---cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCC
Q 034553            2 VLDC---DCHNVKALYRRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQKSLKQLQAESNKRDAKFYANMFARVTKD   78 (91)
Q Consensus         2 al~~---~p~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~mf~~~~~~   78 (91)
                      +|++   +|+++.+++.+|.++..+|++++|+..|+++++++|++..+...+..+....++..++.. .+.+.....+..
T Consensus        16 al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~-~~~~al~~~p~~   94 (117)
T 3k9i_A           16 AIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVE-LLLKIIAETSDD   94 (117)
T ss_dssp             HHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHH-HHHHHHHHHCCC
T ss_pred             HHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHHH-HHHHHHHhCCCc
Confidence            5677   799999999999999999999999999999999999999999999999999998888743 567776665544


Q ss_pred             chh
Q 034553           79 SSV   81 (91)
Q Consensus        79 ~~~   81 (91)
                      ..+
T Consensus        95 ~~~   97 (117)
T 3k9i_A           95 ETI   97 (117)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            333

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*

Probab=99.07  E-value=6.2e-10  Score=67.26  Aligned_cols=85  Identities=9%  Similarity=-0.035  Sum_probs=73.4

Q ss_pred             cccccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCchh
Q 034553            2 VLDCDCHNVKALYRRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQKSLKQLQAESNKRDAKFYANMFARVTKDSSV   81 (91)
Q Consensus         2 al~~~p~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~mf~~~~~~~~~   81 (91)
                      ++.++|+++.+++.+|.+++..|++++|+..|++++.++|++..++..+..+....++..++. ..+.+.....+.....
T Consensus        13 al~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~-~~~~~al~l~p~~~~~   91 (148)
T 2vgx_A           13 LNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAI-HSYSYGAVMDIXEPRF   91 (148)
T ss_dssp             HTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH-HHHHHHHHHSTTCTHH
T ss_pred             HHcCCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHH-HHHHHHHhcCCCCchH
Confidence            688999999999999999999999999999999999999999999999999999998888874 4678877776666566


Q ss_pred             hhhhhh
Q 034553           82 ATKVGY   87 (91)
Q Consensus        82 ~~~~g~   87 (91)
                      ..++|.
T Consensus        92 ~~~lg~   97 (148)
T 2vgx_A           92 PFHAAE   97 (148)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            555553

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A

Probab=99.06  E-value=6.9e-10  Score=66.06  Aligned_cols=86  Identities=9%  Similarity=-0.073  Sum_probs=73.4

Q ss_pred             CcccccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCch
Q 034553            1 MVLDCDCHNVKALYRRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQKSLKQLQAESNKRDAKFYANMFARVTKDSS   80 (91)
Q Consensus         1 ~al~~~p~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~mf~~~~~~~~   80 (91)
                      ++++++|++..+++.+|.+++..|++++|+..|++++.++|++..+...+..+....++..++. ..+.+.....+....
T Consensus         9 ~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~-~~~~~al~~~p~~~~   87 (142)
T 2xcb_A            9 MLRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQAL-QSYSYGALMDINEPR   87 (142)
T ss_dssp             CCTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH-HHHHHHHHHCTTCTH
T ss_pred             HHHcCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHH-HHHHHHHhcCCCCcH
Confidence            4788999999999999999999999999999999999999999999999999999998888874 367777777666555


Q ss_pred             hhhhhhh
Q 034553           81 VATKVGY   87 (91)
Q Consensus        81 ~~~~~g~   87 (91)
                      +...+|.
T Consensus        88 ~~~~lg~   94 (142)
T 2xcb_A           88 FPFHAAE   94 (142)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            5555543

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...

Probab=99.05  E-value=3.3e-10  Score=78.43  Aligned_cols=85  Identities=15%  Similarity=0.185  Sum_probs=57.3

Q ss_pred             cccccCCCHHHHHHHHHHHHHhCC-HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCch
Q 034553            2 VLDCDCHNVKALYRRAQVYMEIAD-LILAELDIKKAIEADPQNREVKLLQKSLKQLQAESNKRDAKFYANMFARVTKDSS   80 (91)
Q Consensus         2 al~~~p~~~ka~~rrg~a~~~lg~-~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~mf~~~~~~~~   80 (91)
                      +|+++|++..+|+.+|.++..+|+ +++|+..|+++++++|++..++..+..+...++...++ ...+.+++...+....
T Consensus       123 al~l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~~~~~~g~~~eA-l~~~~kal~ldP~~~~  201 (382)
T 2h6f_A          123 AIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQE-LEFIADILNQDAKNYH  201 (382)
T ss_dssp             HHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTH-HHHHHHHHHHCTTCHH
T ss_pred             HHHhCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHccCHHHH-HHHHHHHHHhCccCHH
Confidence            566777777777777777777775 77777777777777777777777777776666665554 3356666666665555


Q ss_pred             hhhhhhh
Q 034553           81 VATKVGY   87 (91)
Q Consensus        81 ~~~~~g~   87 (91)
                      ...+.|+
T Consensus       202 a~~~lg~  208 (382)
T 2h6f_A          202 AWQHRQW  208 (382)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            5555554

>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1

Probab=99.04  E-value=3.4e-10  Score=70.47  Aligned_cols=60  Identities=17%  Similarity=0.148  Sum_probs=53.0

Q ss_pred             CcccccCCCHHHHHHHHHHHHHhC-----------CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH
Q 034553            1 MVLDCDCHNVKALYRRAQVYMEIA-----------DLILAELDIKKAIEADPQNREVKLLQKSLKQLQAES   60 (91)
Q Consensus         1 ~al~~~p~~~ka~~rrg~a~~~lg-----------~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~   60 (91)
                      +||+++|++..+|+.+|.+|..+|           ++++|+..|++|++++|++...+..+..+.+...-.
T Consensus        71 ~AL~ldP~~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~~y~~al~~~~ka~el~  141 (158)
T 1zu2_A           71 EALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKSLEMTAKAPQLH  141 (158)
T ss_dssp             HHHHHCTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTHHHHH
T ss_pred             HHHHhCcCcHHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhCHhcc
Confidence            378999999999999999999885           899999999999999999998888887776655443

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...

Probab=99.04  E-value=1.8e-10  Score=79.79  Aligned_cols=84  Identities=11%  Similarity=0.030  Sum_probs=46.3

Q ss_pred             cccccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCchh
Q 034553            2 VLDCDCHNVKALYRRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQKSLKQLQAESNKRDAKFYANMFARVTKDSSV   81 (91)
Q Consensus         2 al~~~p~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~mf~~~~~~~~~   81 (91)
                      +|+++|++..+|+.+|.++..+|++++|+..|+++++++|++..++..+..+...++...++ ...+.++....+.....
T Consensus       158 al~l~P~~~~a~~~~g~~~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eA-l~~~~~al~l~P~~~~a  236 (382)
T 2h6f_A          158 IIEEQPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNE-LQYVDQLLKEDVRNNSV  236 (382)
T ss_dssp             HHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTH-HHHHHHHHHHCTTCHHH
T ss_pred             HHHHCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHH-HHHHHHHHHhCCCCHHH
Confidence            45556666666666666666666666666666666666666666665555555555554443 23445555444444444


Q ss_pred             hhhhh
Q 034553           82 ATKVG   86 (91)
Q Consensus        82 ~~~~g   86 (91)
                      .+++|
T Consensus       237 ~~~lg  241 (382)
T 2h6f_A          237 WNQRY  241 (382)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            44444

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A

Probab=99.02  E-value=1.1e-09  Score=62.00  Aligned_cols=69  Identities=16%  Similarity=0.045  Sum_probs=57.6

Q ss_pred             ccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 034553            5 CDCHNVKALYRRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQKSLKQLQAESNKRDAKFYANMFAR   74 (91)
Q Consensus         5 ~~p~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~mf~~   74 (91)
                      .+|+++.+++.+|.+++.+|++++|+..|+++++++|++..+...+..+....++..++.. .+++....
T Consensus         2 ~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~-~~~~al~l   70 (100)
T 3ma5_A            2 EDPEDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAID-TYAQGIEV   70 (100)
T ss_dssp             ---CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHH-HHHHHHHH
T ss_pred             CCccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHH-HHHHHHhh
Confidence            5899999999999999999999999999999999999999999999999888888777643 45554433

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}

Probab=99.02  E-value=3.3e-10  Score=65.73  Aligned_cols=56  Identities=21%  Similarity=0.239  Sum_probs=52.2

Q ss_pred             cccccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHC------CCCHHHHHHHHHHHHHH
Q 034553            2 VLDCDCHNVKALYRRAQVYMEIADLILAELDIKKAIEAD------PQNREVKLLQKSLKQLQ   57 (91)
Q Consensus         2 al~~~p~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~------p~~~~~~~~l~~~~~~~   57 (91)
                      +|+++|+++.+|+.+|.++..+|++++|+..|+++++++      |++..+...+..+...+
T Consensus        64 al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~~~~l  125 (126)
T 3upv_A           64 AIEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKASQQR  125 (126)
T ss_dssp             HHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHHHC
T ss_pred             HHHhCCCcHHHHHHHHHHHHHHhCHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHHHHHhh
Confidence            678999999999999999999999999999999999999      99999999998887653

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}

Probab=99.02  E-value=1.5e-09  Score=62.16  Aligned_cols=72  Identities=15%  Similarity=0.111  Sum_probs=62.6

Q ss_pred             cccccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 034553            2 VLDCDCHNVKALYRRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQKSLKQLQAESNKRDAKFYANMFAR   74 (91)
Q Consensus         2 al~~~p~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~mf~~   74 (91)
                      +++.+|+++.+++.+|.++..+|++++|+..|+++++++|++..+...+..+....++..++.. .+.+....
T Consensus        11 al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~-~~~~al~~   82 (115)
T 2kat_A           11 MLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQ-AWESGLAA   82 (115)
T ss_dssp             HHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHH-HHHHHHHH
T ss_pred             HHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHH-HHHHHHHh
Confidence            5788999999999999999999999999999999999999999999999999888887777643 45555444

>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*

Probab=99.01  E-value=8.2e-10  Score=81.93  Aligned_cols=84  Identities=13%  Similarity=0.025  Sum_probs=44.2

Q ss_pred             cccccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCchh
Q 034553            2 VLDCDCHNVKALYRRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQKSLKQLQAESNKRDAKFYANMFARVTKDSSV   81 (91)
Q Consensus         2 al~~~p~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~mf~~~~~~~~~   81 (91)
                      ||+++|+++.+|+.+|.++..+|++++|+..|+++++++|++.++...+..+...+++..++. ..|++.....+.....
T Consensus        35 Al~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~nLg~~l~~~g~~~~A~-~~~~kAl~l~P~~~~a  113 (723)
T 4gyw_A           35 ALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQDVQGAL-QCYTRAIQINPAFADA  113 (723)
T ss_dssp             HHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH-HHHHHHHHHCTTCHHH
T ss_pred             HHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHH-HHHHHHHHhCCCCHHH
Confidence            445555555555555555555555555555555555555555555555555555555554442 2344444444444444


Q ss_pred             hhhhh
Q 034553           82 ATKVG   86 (91)
Q Consensus        82 ~~~~g   86 (91)
                      .+++|
T Consensus       114 ~~~Lg  118 (723)
T 4gyw_A          114 HSNLA  118 (723)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            44444

>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*

Probab=98.98  E-value=1.3e-09  Score=80.93  Aligned_cols=86  Identities=10%  Similarity=0.007  Sum_probs=73.9

Q ss_pred             CcccccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCch
Q 034553            1 MVLDCDCHNVKALYRRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQKSLKQLQAESNKRDAKFYANMFARVTKDSS   80 (91)
Q Consensus         1 ~al~~~p~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~mf~~~~~~~~   80 (91)
                      +||+++|+++.+|+.+|.++..+|++++|+..|+++++++|++.++...+..+....++..++. ..|++.....+....
T Consensus        68 ~Al~l~P~~~~a~~nLg~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi-~~~~~Al~l~P~~~~  146 (723)
T 4gyw_A           68 EAIRISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAI-ASYRTALKLKPDFPD  146 (723)
T ss_dssp             HHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH-HHHHHHHHHCSCCHH
T ss_pred             HHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHH-HHHHHHHHhCCCChH
Confidence            3688999999999999999999999999999999999999999999999999999988888874 467888877777666


Q ss_pred             hhhhhhh
Q 034553           81 VATKVGY   87 (91)
Q Consensus        81 ~~~~~g~   87 (91)
                      ...++|.
T Consensus       147 a~~~L~~  153 (723)
T 4gyw_A          147 AYCNLAH  153 (723)
T ss_dssp             HHHHHHH
T ss_pred             HHhhhhh
Confidence            6666664

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8

Probab=98.96  E-value=1.2e-09  Score=68.10  Aligned_cols=79  Identities=5%  Similarity=-0.016  Sum_probs=67.3

Q ss_pred             cccccCC-------CHH-----HHHHHHHHHHHhCCHHHHHHHHHHHHHH-------CCCCHHHH----HHHHHHHHHHH
Q 034553            2 VLDCDCH-------NVK-----ALYRRAQVYMEIADLILAELDIKKAIEA-------DPQNREVK----LLQKSLKQLQA   58 (91)
Q Consensus         2 al~~~p~-------~~k-----a~~rrg~a~~~lg~~~~A~~~~~~al~l-------~p~~~~~~----~~l~~~~~~~~   58 (91)
                      ||+++|+       +..     +|+.+|.++..+|+|++|+.+|++++++       +|++..++    ..+..+...++
T Consensus        37 AL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lg  116 (159)
T 2hr2_A           37 AMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLG  116 (159)
T ss_dssp             HHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTT
T ss_pred             HHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCC
Confidence            6778887       444     9999999999999999999999999999       99999999    99999999999


Q ss_pred             HHHHHHHHHHHHhhhcccCCchh
Q 034553           59 ESNKRDAKFYANMFARVTKDSSV   81 (91)
Q Consensus        59 ~~~~~~~~~~~~mf~~~~~~~~~   81 (91)
                      ...++.. .|++.....+++..+
T Consensus       117 r~eEAl~-~y~kAlel~p~d~~~  138 (159)
T 2hr2_A          117 RGAEAMP-EFKKVVEMIEERKGE  138 (159)
T ss_dssp             CHHHHHH-HHHHHHHHHHHCCSC
T ss_pred             CHHHHHH-HHHHHHhcCCCcHHH
Confidence            9988754 677777766555444

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}

Probab=98.96  E-value=3.4e-09  Score=67.24  Aligned_cols=85  Identities=15%  Similarity=0.151  Sum_probs=73.9

Q ss_pred             cccccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCchh
Q 034553            2 VLDCDCHNVKALYRRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQKSLKQLQAESNKRDAKFYANMFARVTKDSSV   81 (91)
Q Consensus         2 al~~~p~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~mf~~~~~~~~~   81 (91)
                      +++++|+++.+++.+|.++..+|++++|+..|+++++++ ++..+...+..+....++..++. ..+++.....+.....
T Consensus       110 al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~la~~~~~~g~~~~A~-~~~~~al~~~P~~~~~  187 (217)
T 2pl2_A          110 AERVNPRYAPLHLQRGLVYALLGERDKAEASLKQALALE-DTPEIRSALAELYLSMGRLDEAL-AQYAKALEQAPKDLDL  187 (217)
T ss_dssp             HHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHTCHHHHH-HHHHHHHHHSTTCHHH
T ss_pred             HHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc-cchHHHHHHHHHHHHcCCHHHHH-HHHHHHHHhCCCChHH
Confidence            678899999999999999999999999999999999999 99999999999999998888874 4678888877766666


Q ss_pred             hhhhhhc
Q 034553           82 ATKVGYF   88 (91)
Q Consensus        82 ~~~~g~f   88 (91)
                      ...+|..
T Consensus       188 ~~~la~~  194 (217)
T 2pl2_A          188 RVRYASA  194 (217)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            6666543

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}

Probab=98.96  E-value=1.1e-09  Score=66.36  Aligned_cols=61  Identities=25%  Similarity=0.176  Sum_probs=53.9

Q ss_pred             cccccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHH--HHHHHHHHHHHHHHHHH
Q 034553            2 VLDCDCHNVKALYRRAQVYMEIADLILAELDIKKAIEADPQNRE--VKLLQKSLKQLQAESNK   62 (91)
Q Consensus         2 al~~~p~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~--~~~~l~~~~~~~~~~~~   62 (91)
                      +|+++|+++.+|+.+|.++..+|++++|+..|+++++++|++..  +...+..++.++.+..+
T Consensus        71 al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~~~~~~  133 (164)
T 3sz7_A           71 ATVVDPKYSKAWSRLGLARFDMADYKGAKEAYEKGIEAEGNGGSDAMKRGLETTKRKIEEANR  133 (164)
T ss_dssp             HHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHHHHHh
Confidence            67899999999999999999999999999999999999999876  67777777777766544

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}

Probab=98.96  E-value=1.2e-09  Score=64.35  Aligned_cols=72  Identities=17%  Similarity=0.181  Sum_probs=51.9

Q ss_pred             cccccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCH-------HHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 034553            2 VLDCDCHNVKALYRRAQVYMEIADLILAELDIKKAIEADPQNR-------EVKLLQKSLKQLQAESNKRDAKFYANMFAR   74 (91)
Q Consensus         2 al~~~p~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~-------~~~~~l~~~~~~~~~~~~~~~~~~~~mf~~   74 (91)
                      ||+++|+++.+|+.+|.+++.+|+|++|+.+|+++++++|++.       .+...+..+...++...++. ..|.+.+..
T Consensus        34 Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~-~~~~kal~~  112 (127)
T 4gcn_A           34 AIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSRAGNAFQKQNDLSLAV-QWFHRSLSE  112 (127)
T ss_dssp             HHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHH-HHHHHHHHH
T ss_pred             HHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHHcCCHHHHH-HHHHHHHhh
Confidence            6788899999999999999999999999999999999888764       24444555555555555543 245554443

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*

Probab=98.95  E-value=3.1e-09  Score=61.85  Aligned_cols=74  Identities=12%  Similarity=0.089  Sum_probs=57.8

Q ss_pred             cccccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccc
Q 034553            2 VLDCDCHNVKALYRRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQKSLKQLQAESNKRDAKFYANMFARVT   76 (91)
Q Consensus         2 al~~~p~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~mf~~~~   76 (91)
                      +++++|+++.+|+.+|.++..+|++++|+..|+++++++|++..+...+..+....++..++. ..+.+.....+
T Consensus        35 al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~-~~~~~a~~~~p  108 (137)
T 3q49_B           35 AITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQLEMESYDEAI-ANLQRAYSLAK  108 (137)
T ss_dssp             HHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH-HHHHHHHHHHH
T ss_pred             HHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHHhhHHHHH-HHHHHHHHHCh
Confidence            567788888888888888888888888888888888888888888888888888777776663 34555555443

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}

Probab=98.95  E-value=1.6e-09  Score=65.43  Aligned_cols=73  Identities=14%  Similarity=0.168  Sum_probs=64.3

Q ss_pred             cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCc
Q 034553            6 DCHNVKALYRRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQKSLKQLQAESNKRDAKFYANMFARVTKDS   79 (91)
Q Consensus         6 ~p~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~mf~~~~~~~   79 (91)
                      +|.++.+|+.+|.+++.+|+|++|+.+++++++++|++..+...+..+...++...++. ..+.+.....+...
T Consensus        59 ~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~-~~~~~al~l~p~~~  131 (162)
T 3rkv_A           59 DRKNIPLYANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAE-EDLKLLLRNHPAAA  131 (162)
T ss_dssp             HHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHH-HHHHHHHHHCGGGH
T ss_pred             HHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHH-HHHHHHHhcCCCCH
Confidence            78888999999999999999999999999999999999999999999999999888874 35677776655543

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1

Probab=98.95  E-value=6.1e-09  Score=58.32  Aligned_cols=82  Identities=13%  Similarity=0.121  Sum_probs=67.1

Q ss_pred             cccccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCchh
Q 034553            2 VLDCDCHNVKALYRRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQKSLKQLQAESNKRDAKFYANMFARVTKDSSV   81 (91)
Q Consensus         2 al~~~p~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~mf~~~~~~~~~   81 (91)
                      ++..+|+++.+++.+|.++..+|++++|+..++++++++|++..+...+..+....++..++. ..+.+.....+.....
T Consensus        30 ~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~-~~~~~~~~~~~~~~~~  108 (118)
T 1elw_A           30 AIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNRFEEAK-RTYEEGLKHEANNPQL  108 (118)
T ss_dssp             HHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH-HHHHHHHTTCTTCHHH
T ss_pred             HHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHH-HHHHHHHHcCCCCHHH
Confidence            467889999999999999999999999999999999999999999999998888888777764 3567766665554444


Q ss_pred             hhh
Q 034553           82 ATK   84 (91)
Q Consensus        82 ~~~   84 (91)
                      ...
T Consensus       109 ~~~  111 (118)
T 1elw_A          109 KEG  111 (118)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            433

>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1

Probab=98.94  E-value=4.2e-09  Score=65.49  Aligned_cols=76  Identities=14%  Similarity=0.179  Sum_probs=63.8

Q ss_pred             cccccCCCHHHHHHHHHHHHHhCCH----------HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH-----------HH
Q 034553            2 VLDCDCHNVKALYRRAQVYMEIADL----------ILAELDIKKAIEADPQNREVKLLQKSLKQLQA-----------ES   60 (91)
Q Consensus         2 al~~~p~~~ka~~rrg~a~~~lg~~----------~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~-----------~~   60 (91)
                      +++++|+++.+|++.|.++..++++          ++|+..|++|++++|++.++...+..+...++           ..
T Consensus        28 Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~lg~l~P~~~~a~g~~  107 (158)
T 1zu2_A           28 TYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNF  107 (158)
T ss_dssp             HHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHH
T ss_pred             HHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhcccCcchhhhhccH
Confidence            6789999999999999999999875          59999999999999999999999999988775           44


Q ss_pred             HHHHHHHHHHhhhcccCC
Q 034553           61 NKRDAKFYANMFARVTKD   78 (91)
Q Consensus        61 ~~~~~~~~~~mf~~~~~~   78 (91)
                      .++ ...|++.....+..
T Consensus       108 ~eA-~~~~~kAl~l~P~~  124 (158)
T 1zu2_A          108 DLA-TQFFQQAVDEQPDN  124 (158)
T ss_dssp             HHH-HHHHHHHHHHCTTC
T ss_pred             HHH-HHHHHHHHHhCCCC
Confidence            444 34677777765543

>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A

Probab=98.94  E-value=3.7e-09  Score=64.54  Aligned_cols=74  Identities=12%  Similarity=0.093  Sum_probs=65.8

Q ss_pred             cccccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccc
Q 034553            2 VLDCDCHNVKALYRRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQKSLKQLQAESNKRDAKFYANMFARVT   76 (91)
Q Consensus         2 al~~~p~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~mf~~~~   76 (91)
                      ++.++|.++.+++.+|.++..+|++++|+..|+++++++|++..+...+..+....++..++. ..+++..+..+
T Consensus        99 a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~-~~~~~al~~~p  172 (184)
T 3vtx_A           99 AIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDEAV-KYFKKALEKEE  172 (184)
T ss_dssp             HHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH-HHHHHHHHTTH
T ss_pred             HHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHHHH-HHHHHHHhCCc
Confidence            567899999999999999999999999999999999999999999999999999998888874 45777766643

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}

Probab=98.94  E-value=5.3e-09  Score=65.91  Aligned_cols=78  Identities=13%  Similarity=0.141  Sum_probs=68.1

Q ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCchhhhhhhhc
Q 034553           10 VKALYRRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQKSLKQLQAESNKRDAKFYANMFARVTKDSSVATKVGYF   88 (91)
Q Consensus        10 ~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~mf~~~~~~~~~~~~~g~f   88 (91)
                      +..++.+|.++..+|++++|+..|+++++++|++..+...+..+....++..++. ..+.+.....+.......++|.+
T Consensus        54 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~-~~~~~al~~~P~~~~a~~~lg~~  131 (208)
T 3urz_A           54 SKLATELALAYKKNRNYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDAL-RMYEKILQLEADNLAANIFLGNY  131 (208)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHH-HHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHH-HHHHHHHHcCCCCHHHHHHHHHH
Confidence            4566779999999999999999999999999999999999999999999988874 46888888877777777777754

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}

Probab=98.92  E-value=3.8e-09  Score=59.29  Aligned_cols=42  Identities=7%  Similarity=0.110  Sum_probs=26.4

Q ss_pred             cccccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCC
Q 034553            2 VLDCDCHNVKALYRRAQVYMEIADLILAELDIKKAIEADPQN   43 (91)
Q Consensus         2 al~~~p~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~   43 (91)
                      +++++|+++.+++.+|.++..+|++++|+..|+++++++|++
T Consensus        30 al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~   71 (111)
T 2l6j_A           30 LITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTA   71 (111)
T ss_dssp             HHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSST
T ss_pred             HHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCc
Confidence            345566666666666666666666666666666666666665

>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A

Probab=98.91  E-value=1e-08  Score=62.51  Aligned_cols=69  Identities=17%  Similarity=0.006  Sum_probs=41.0

Q ss_pred             CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccC
Q 034553            8 HNVKALYRRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQKSLKQLQAESNKRDAKFYANMFARVTK   77 (91)
Q Consensus         8 ~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~mf~~~~~   77 (91)
                      +++..|+.+|.++..+|+|++|+..|+++++++|++..+...+..+....+...+.. ..+.+.....+.
T Consensus         3 e~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~-~~~~~~~~~~~~   71 (184)
T 3vtx_A            3 ETTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAI-ESLKKFVVLDTT   71 (184)
T ss_dssp             -CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH-HHHHHHHHHCCC
T ss_pred             cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHH-HHHHHHHhcCch
Confidence            455666666777777777777777777777777766666666666666655555442 233444433333

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A

Probab=98.90  E-value=5.5e-09  Score=56.76  Aligned_cols=81  Identities=20%  Similarity=0.230  Sum_probs=63.5

Q ss_pred             cC-CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCchhhhh
Q 034553            6 DC-HNVKALYRRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQKSLKQLQAESNKRDAKFYANMFARVTKDSSVATK   84 (91)
Q Consensus         6 ~p-~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~mf~~~~~~~~~~~~   84 (91)
                      +| .++.+++.+|.++...|++++|+..|+++++++|++..+...+..+....++..++. ..+.+.....+........
T Consensus         4 ~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~-~~~~~a~~~~p~~~~~~~~   82 (91)
T 1na3_A            4 DPGNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAI-EYYQKALELDPNNAEAKQN   82 (91)
T ss_dssp             --CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH-HHHHHHHHHCTTCHHHHHH
T ss_pred             cccccHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHH-HHHHHHHhcCCCCHHHHHH
Confidence            44 467889999999999999999999999999999999998888888888888777764 3567777666665555555


Q ss_pred             hhh
Q 034553           85 VGY   87 (91)
Q Consensus        85 ~g~   87 (91)
                      +|.
T Consensus        83 l~~   85 (91)
T 1na3_A           83 LGN   85 (91)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            554

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}

Probab=98.89  E-value=7.5e-09  Score=59.33  Aligned_cols=83  Identities=14%  Similarity=0.145  Sum_probs=65.8

Q ss_pred             cccccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCchh
Q 034553            2 VLDCDCHNVKALYRRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQKSLKQLQAESNKRDAKFYANMFARVTKDSSV   81 (91)
Q Consensus         2 al~~~p~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~mf~~~~~~~~~   81 (91)
                      +++++|.+..+++.+|.++..+|++++|+..|+++++++|++..+...+..+....++..++. ..+.+.....+.....
T Consensus        42 al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~-~~~~~~~~~~p~~~~~  120 (133)
T 2lni_A           42 AIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAALEAMKDYTKAM-DVYQKALDLDSSCKEA  120 (133)
T ss_dssp             HHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH-HHHHHHHHHCGGGTHH
T ss_pred             HHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHhhHHHHH-HHHHHHHHhCCCchHH
Confidence            567889999999999999999999999999999999999999999988888888887777764 3566666655443333


Q ss_pred             hhhh
Q 034553           82 ATKV   85 (91)
Q Consensus        82 ~~~~   85 (91)
                      ...+
T Consensus       121 ~~~l  124 (133)
T 2lni_A          121 ADGY  124 (133)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            3333

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}

Probab=98.85  E-value=9.8e-09  Score=57.02  Aligned_cols=46  Identities=22%  Similarity=0.306  Sum_probs=42.3

Q ss_pred             cccccCCCHH-HHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHH
Q 034553            2 VLDCDCHNVK-ALYRRAQVYMEIADLILAELDIKKAIEADPQNREVK   47 (91)
Q Consensus         2 al~~~p~~~k-a~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~~~   47 (91)
                      +++++|+++. +++.+|.++..+|++++|+..|+++++++|++..+.
T Consensus        26 al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~   72 (99)
T 2kc7_A           26 FLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQ   72 (99)
T ss_dssp             HHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHH
T ss_pred             HHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHH
Confidence            5678999999 999999999999999999999999999999998776

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1

Probab=98.85  E-value=1.9e-08  Score=57.06  Aligned_cols=84  Identities=13%  Similarity=0.127  Sum_probs=63.7

Q ss_pred             cccccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCchh
Q 034553            2 VLDCDCHNVKALYRRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQKSLKQLQAESNKRDAKFYANMFARVTKDSSV   81 (91)
Q Consensus         2 al~~~p~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~mf~~~~~~~~~   81 (91)
                      ++..+|+++.+++.+|.++..+|++++|+..++++++++|++..+...+..+....++..++. ..+.+.....+.....
T Consensus        38 ~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~-~~~~~~~~~~p~~~~~  116 (131)
T 2vyi_A           38 AIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLALSSLNKHVEAV-AYYKKALELDPDNETY  116 (131)
T ss_dssp             HHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH-HHHHHHHHHSTTCHHH
T ss_pred             HHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHHHHHhCCHHHHH-HHHHHHHhcCccchHH
Confidence            456788888999999999999999999999999999999988888888888887777776663 3566666655544444


Q ss_pred             hhhhh
Q 034553           82 ATKVG   86 (91)
Q Consensus        82 ~~~~g   86 (91)
                      ...+|
T Consensus       117 ~~~l~  121 (131)
T 2vyi_A          117 KSNLK  121 (131)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            44443

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A

Probab=98.84  E-value=1.9e-08  Score=59.70  Aligned_cols=51  Identities=22%  Similarity=0.406  Sum_probs=27.2

Q ss_pred             ccccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Q 034553            3 LDCDCHNVKALYRRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQKSL   53 (91)
Q Consensus         3 l~~~p~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~~~~~l~~~   53 (91)
                      ++++|.++.+++.+|.++..+|++++|+..|+++++++|++..+...+..+
T Consensus        74 ~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~  124 (166)
T 1a17_A           74 IELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQEC  124 (166)
T ss_dssp             HHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred             HHhCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence            444555555555555555555555555555555555555555544443333

>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}

Probab=98.83  E-value=7.9e-09  Score=65.09  Aligned_cols=73  Identities=14%  Similarity=0.123  Sum_probs=44.4

Q ss_pred             cccccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHH-------HHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 034553            2 VLDCDCHNVKALYRRAQVYMEIADLILAELDIKKAIEADPQNRE-------VKLLQKSLKQLQAESNKRDAKFYANMFAR   74 (91)
Q Consensus         2 al~~~p~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~-------~~~~l~~~~~~~~~~~~~~~~~~~~mf~~   74 (91)
                      +++++|+++.+|+.+|.++..+|++++|+..|+++++++|++..       +...+..+....++..++. ..+.+....
T Consensus        68 al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~-~~~~~al~~  146 (228)
T 4i17_A           68 AIKKNYNLANAYIGKSAAYRDMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAE-ENYKHATDV  146 (228)
T ss_dssp             HHHTTCSHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHH-HHHHHHTTS
T ss_pred             HHHhCcchHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHH-HHHHHHHhc
Confidence            45667777777777777777777777777777777777777763       3444444444444444442 245555544


Q ss_pred             c
Q 034553           75 V   75 (91)
Q Consensus        75 ~   75 (91)
                      .
T Consensus       147 ~  147 (228)
T 4i17_A          147 T  147 (228)
T ss_dssp             S
T ss_pred             C
Confidence            3

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A

Probab=98.82  E-value=1.6e-08  Score=68.30  Aligned_cols=84  Identities=10%  Similarity=0.054  Sum_probs=71.4

Q ss_pred             cccccCCC---------------HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 034553            2 VLDCDCHN---------------VKALYRRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQKSLKQLQAESNKRDAK   66 (91)
Q Consensus         2 al~~~p~~---------------~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~~~   66 (91)
                      ||+++|++               +.+|+.+|.++..+|+|++|+..|+++++++|++..+...+..+...+++..++. .
T Consensus       173 Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~-~  251 (336)
T 1p5q_A          173 IVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELAR-A  251 (336)
T ss_dssp             HHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH-H
T ss_pred             HHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHH-H
Confidence            57788888               7999999999999999999999999999999999999999999999998888874 4


Q ss_pred             HHHHhhhcccCCchhhhhhh
Q 034553           67 FYANMFARVTKDSSVATKVG   86 (91)
Q Consensus        67 ~~~~mf~~~~~~~~~~~~~g   86 (91)
                      .+.+.....+....+...+|
T Consensus       252 ~~~~al~l~P~~~~a~~~l~  271 (336)
T 1p5q_A          252 DFQKVLQLYPNNKAAKTQLA  271 (336)
T ss_dssp             HHHHHHHHCSSCHHHHHHHH
T ss_pred             HHHHHHHHCCCCHHHHHHHH
Confidence            67777777666555554444

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}

Probab=98.82  E-value=9.7e-09  Score=57.09  Aligned_cols=72  Identities=10%  Similarity=-0.013  Sum_probs=41.8

Q ss_pred             cccccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCC--CHHHHHHHHHHHHHH-HHHHHHHHHHHHHhhhc
Q 034553            2 VLDCDCHNVKALYRRAQVYMEIADLILAELDIKKAIEADPQ--NREVKLLQKSLKQLQ-AESNKRDAKFYANMFAR   74 (91)
Q Consensus         2 al~~~p~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~--~~~~~~~l~~~~~~~-~~~~~~~~~~~~~mf~~   74 (91)
                      +++++|.+..+++.+|.++..+|++++|+..|+++++++|+  +..+...+..+.... ++..++. ..+.+....
T Consensus        32 a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~-~~~~~~~~~  106 (112)
T 2kck_A           32 AIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKADALRYIEGKEVEAE-IAEARAKLE  106 (112)
T ss_dssp             HHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHHHHTTCSSCSHHHH-HHHHHHGGG
T ss_pred             HHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHHHHHHHhCCHHHHH-HHHHHHhhc
Confidence            34556666666666666666666666666666666666666  666666666665555 5544442 234444433

>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}

Probab=98.82  E-value=2.8e-08  Score=57.14  Aligned_cols=76  Identities=14%  Similarity=0.162  Sum_probs=63.4

Q ss_pred             cccccCCCH---HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCC---HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 034553            2 VLDCDCHNV---KALYRRAQVYMEIADLILAELDIKKAIEADPQN---REVKLLQKSLKQLQAESNKRDAKFYANMFARV   75 (91)
Q Consensus         2 al~~~p~~~---ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~---~~~~~~l~~~~~~~~~~~~~~~~~~~~mf~~~   75 (91)
                      +++.+|+++   .+++.+|.+++.+|++++|+..|++++.++|++   ..+...+..+....++..++. ..+.++....
T Consensus        28 ~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~~~~~g~~~~A~-~~~~~~~~~~  106 (129)
T 2xev_A           28 FLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLSQYGEGKNTEAQ-QTLQQVATQY  106 (129)
T ss_dssp             HHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHH-HHHHHHHHHS
T ss_pred             HHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHcCCHHHHH-HHHHHHHHHC
Confidence            456788888   899999999999999999999999999999999   788888888888888877764 3567776665


Q ss_pred             cCC
Q 034553           76 TKD   78 (91)
Q Consensus        76 ~~~   78 (91)
                      +..
T Consensus       107 p~~  109 (129)
T 2xev_A          107 PGS  109 (129)
T ss_dssp             TTS
T ss_pred             CCC
Confidence            443

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.81  E-value=3.5e-08  Score=57.52  Aligned_cols=79  Identities=16%  Similarity=0.085  Sum_probs=61.7

Q ss_pred             cccccCCC---HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCC
Q 034553            2 VLDCDCHN---VKALYRRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQKSLKQLQAESNKRDAKFYANMFARVTKD   78 (91)
Q Consensus         2 al~~~p~~---~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~mf~~~~~~   78 (91)
                      +++++|++   ..+++.+|.++..+|++++|+..|+++++++|++..+...+..+....++..++. ..+.+.....+..
T Consensus        54 a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~-~~~~~al~~~p~~  132 (148)
T 2dba_A           54 ALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRRSQALEKLGRLDQAV-LDLQRCVSLEPKN  132 (148)
T ss_dssp             HHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHTCHHHHH-HHHHHHHHHCSSC
T ss_pred             HHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHHHHHHHHHcCCHHHHH-HHHHHHHHcCCCc
Confidence            46778877   8889999999999999999999999999999988888888888888877777663 3566666655544


Q ss_pred             chh
Q 034553           79 SSV   81 (91)
Q Consensus        79 ~~~   81 (91)
                      ..+
T Consensus       133 ~~~  135 (148)
T 2dba_A          133 KVF  135 (148)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            333

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}

Probab=98.79  E-value=1.7e-08  Score=67.03  Aligned_cols=78  Identities=14%  Similarity=0.095  Sum_probs=64.3

Q ss_pred             cccccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCc
Q 034553            2 VLDCDCHNVKALYRRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQKSLKQLQAESNKRDAKFYANMFARVTKDS   79 (91)
Q Consensus         2 al~~~p~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~mf~~~~~~~   79 (91)
                      +++.+|+++.+|+.+|.++..+|++++|+..|+++++++|++.++...+..+....+...++-...++++....+...
T Consensus       192 ~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P~~~  269 (291)
T 3mkr_A          192 MADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAHRSHP  269 (291)
T ss_dssp             HHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCH
T ss_pred             HHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCCh
Confidence            467799999999999999999999999999999999999999999999988887777665543445566665555433

>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1

Probab=98.79  E-value=1.5e-08  Score=62.69  Aligned_cols=57  Identities=14%  Similarity=0.161  Sum_probs=50.4

Q ss_pred             cccc-C-CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH
Q 034553            3 LDCD-C-HNVKALYRRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQKSLKQLQAE   59 (91)
Q Consensus         3 l~~~-p-~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~   59 (91)
                      ++.+ | ++.+++|.+|.+++++|+|+.|+..++++|+++|+|..+......++.++..
T Consensus        62 l~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~ieP~n~QA~~Lk~~ie~~~~k  120 (152)
T 1pc2_A           62 LPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAKELERLIDKAMKK  120 (152)
T ss_dssp             HHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHH
T ss_pred             HhcCCccchHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHH
Confidence            3445 6 6799999999999999999999999999999999999999998888876643

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1

Probab=98.79  E-value=3.5e-08  Score=61.24  Aligned_cols=84  Identities=12%  Similarity=-0.012  Sum_probs=68.5

Q ss_pred             cccccCCCH----------------HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 034553            2 VLDCDCHNV----------------KALYRRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQKSLKQLQAESNKRDA   65 (91)
Q Consensus         2 al~~~p~~~----------------ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~~   65 (91)
                      ++++.|.++                .+++.+|.++..+|++++|+..|+++++++|++..+...+..+...+++..++. 
T Consensus        64 al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~-  142 (198)
T 2fbn_A           64 ALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAK-  142 (198)
T ss_dssp             HHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHH-
T ss_pred             HHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHH-
Confidence            466777776                899999999999999999999999999999999999999999998888887764 


Q ss_pred             HHHHHhhhcccCCchhhhhhh
Q 034553           66 KFYANMFARVTKDSSVATKVG   86 (91)
Q Consensus        66 ~~~~~mf~~~~~~~~~~~~~g   86 (91)
                      ..+++.....+....+...++
T Consensus       143 ~~~~~al~~~p~~~~~~~~l~  163 (198)
T 2fbn_A          143 ENLYKAASLNPNNLDIRNSYE  163 (198)
T ss_dssp             HHHHHHHHHSTTCHHHHHHHH
T ss_pred             HHHHHHHHHCCCcHHHHHHHH
Confidence            356777666555544444443

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A

Probab=98.78  E-value=4.7e-08  Score=54.99  Aligned_cols=83  Identities=20%  Similarity=0.236  Sum_probs=56.1

Q ss_pred             cccccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCchh
Q 034553            2 VLDCDCHNVKALYRRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQKSLKQLQAESNKRDAKFYANMFARVTKDSSV   81 (91)
Q Consensus         2 al~~~p~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~mf~~~~~~~~~   81 (91)
                      +++.+|+++.+++.+|.++...|++++|+..|++++.++|++..+...+..+....+...++. ..+.++....+.....
T Consensus        35 ~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~-~~~~~~~~~~~~~~~~  113 (125)
T 1na0_A           35 ALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAI-EYYQKALELDPNNAEA  113 (125)
T ss_dssp             HHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH-HHHHHHHHHCTTCHHH
T ss_pred             HHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHH-HHHHHHHHhCCCcHHH
Confidence            345677777788888888888888888888888888888877777777777766666665553 3456665554444443


Q ss_pred             hhhh
Q 034553           82 ATKV   85 (91)
Q Consensus        82 ~~~~   85 (91)
                      ...+
T Consensus       114 ~~~l  117 (125)
T 1na0_A          114 KQNL  117 (125)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            3333

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A

Probab=98.78  E-value=2e-08  Score=70.48  Aligned_cols=84  Identities=12%  Similarity=0.125  Sum_probs=68.7

Q ss_pred             cccccCCC---------------HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 034553            2 VLDCDCHN---------------VKALYRRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQKSLKQLQAESNKRDAK   66 (91)
Q Consensus         2 al~~~p~~---------------~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~~~   66 (91)
                      ||+++|.+               ..+|+.+|.+++.+|+|++|+.+|+++++++|++..+...+..+...++++.++. .
T Consensus       294 Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~-~  372 (457)
T 1kt0_A          294 IVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAK-G  372 (457)
T ss_dssp             HHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHH-H
T ss_pred             HHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHH-H
Confidence            57778888               7999999999999999999999999999999999999999999999998888874 4


Q ss_pred             HHHHhhhcccCCchhhhhhh
Q 034553           67 FYANMFARVTKDSSVATKVG   86 (91)
Q Consensus        67 ~~~~mf~~~~~~~~~~~~~g   86 (91)
                      .+.+.....+....+...+|
T Consensus       373 ~~~~al~l~P~~~~a~~~l~  392 (457)
T 1kt0_A          373 DFEKVLEVNPQNKAARLQIS  392 (457)
T ss_dssp             HHHHHHTTC----CHHHHHH
T ss_pred             HHHHHHHhCCCCHHHHHHHH
Confidence            57777777665555554444

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3

Probab=98.78  E-value=2.8e-08  Score=70.25  Aligned_cols=84  Identities=14%  Similarity=0.043  Sum_probs=68.2

Q ss_pred             cccccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCchh
Q 034553            2 VLDCDCHNVKALYRRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQKSLKQLQAESNKRDAKFYANMFARVTKDSSV   81 (91)
Q Consensus         2 al~~~p~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~mf~~~~~~~~~   81 (91)
                      ||+++|++..+|+.+|.++..+|++++|+..|+++++++|++..+...+..+...+++..++.. .+++.....+.....
T Consensus        32 Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~eA~~-~~~~al~~~p~~~~~  110 (477)
T 1wao_1           32 AIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRAALR-DYETVVKVKPHDKDA  110 (477)
T ss_dssp             HHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHTCHHHHHH-HHHHHHHHSTTCTTH
T ss_pred             HHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHH-HHHHHHHhCCCCHHH
Confidence            6778999999999999999999999999999999999999999999999988888888887743 567777665555444


Q ss_pred             hhhhh
Q 034553           82 ATKVG   86 (91)
Q Consensus        82 ~~~~g   86 (91)
                      ...+|
T Consensus       111 ~~~l~  115 (477)
T 1wao_1          111 KMKYQ  115 (477)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            44443

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*

Probab=98.77  E-value=8e-08  Score=55.69  Aligned_cols=83  Identities=7%  Similarity=-0.095  Sum_probs=66.4

Q ss_pred             ccccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCchhh
Q 034553            3 LDCDCHNVKALYRRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQKSLKQLQAESNKRDAKFYANMFARVTKDSSVA   82 (91)
Q Consensus         3 l~~~p~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~mf~~~~~~~~~~   82 (91)
                      +..+|.++.+++..|.+++..|+|++|+..|++++.++|++..+...+..+....+...++. ..+.+.....+......
T Consensus         2 ~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~-~~~~~al~~~p~~~~~~   80 (137)
T 3q49_B            2 PHMKSPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQAL-ADCRRALELDGQSVKAH   80 (137)
T ss_dssp             ----CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH-HHHHHHHHHCTTCHHHH
T ss_pred             CCCccccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHH-HHHHHHHHhCchhHHHH
Confidence            35678999999999999999999999999999999999999999999999998888887764 35667666655544444


Q ss_pred             hhhh
Q 034553           83 TKVG   86 (91)
Q Consensus        83 ~~~g   86 (91)
                      ..+|
T Consensus        81 ~~l~   84 (137)
T 3q49_B           81 FFLG   84 (137)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            4444

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A

Probab=98.77  E-value=6.2e-08  Score=52.42  Aligned_cols=55  Identities=33%  Similarity=0.320  Sum_probs=50.0

Q ss_pred             cccccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Q 034553            2 VLDCDCHNVKALYRRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQKSLKQL   56 (91)
Q Consensus         2 al~~~p~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~   56 (91)
                      +++++|+++.+++.+|.++..+|++++|+..|+++++++|++..+...+..+...
T Consensus        35 a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~   89 (91)
T 1na3_A           35 ALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQK   89 (91)
T ss_dssp             HHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHh
Confidence            5678999999999999999999999999999999999999999888887776543

>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}

Probab=98.76  E-value=2.6e-08  Score=62.70  Aligned_cols=77  Identities=9%  Similarity=-0.039  Sum_probs=64.4

Q ss_pred             cccccC-CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCc
Q 034553            2 VLDCDC-HNVKALYRRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQKSLKQLQAESNKRDAKFYANMFARVTKDS   79 (91)
Q Consensus         2 al~~~p-~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~mf~~~~~~~   79 (91)
                      +|+++| .+..+++.+|.++..+|++++|+..|+++++++|++..+...+..+....++..++. ..+++.....+...
T Consensus        33 al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~-~~~~~al~~~p~~~  110 (228)
T 4i17_A           33 YLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKSAAYRDMKNNQEYI-ATLTEGIKAVPGNA  110 (228)
T ss_dssp             HHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHHHHHHHTTCHHHHH-HHHHHHHHHSTTCH
T ss_pred             HHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHcccHHHHH-HHHHHHHHHCCCcH
Confidence            567788 888999999999999999999999999999999999999999999988888887764 35677776655544

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=98.76  E-value=4.7e-09  Score=76.88  Aligned_cols=58  Identities=14%  Similarity=0.109  Sum_probs=28.4

Q ss_pred             ccccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH
Q 034553            3 LDCDCHNVKALYRRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQKSLKQLQAES   60 (91)
Q Consensus         3 l~~~p~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~   60 (91)
                      ++++|+++.+|+.+|.++..+|++++|+..|+++++++|++..+...+..+....++.
T Consensus       460 l~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~~~~~g~~  517 (681)
T 2pzi_A          460 AERVGWRWRLVWYRAVAELLTGDYDSATKHFTEVLDTFPGELAPKLALAATAELAGNT  517 (681)
T ss_dssp             HHHHCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCC
T ss_pred             hccCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCh
Confidence            3444555555555555555555555555555555555555444444444444444433

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}

Probab=98.75  E-value=1.6e-08  Score=58.24  Aligned_cols=48  Identities=8%  Similarity=-0.071  Sum_probs=44.5

Q ss_pred             cccccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHH
Q 034553            2 VLDCDCHNVKALYRRAQVYMEIADLILAELDIKKAIEADPQNREVKLL   49 (91)
Q Consensus         2 al~~~p~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~~~~~   49 (91)
                      +++++|+++.+++.+|.++..+|++++|+..|+++++++|+++.+...
T Consensus        53 al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~  100 (117)
T 3k9i_A           53 GVKQFPNHQALRVFYAMVLYNLGRYEQGVELLLKIIAETSDDETIQSY  100 (117)
T ss_dssp             HHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHT
T ss_pred             HHHhCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHH
Confidence            678899999999999999999999999999999999999999876543

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}

Probab=98.74  E-value=2.7e-08  Score=55.24  Aligned_cols=81  Identities=12%  Similarity=0.099  Sum_probs=66.3

Q ss_pred             ccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccC--Cchhh
Q 034553            5 CDCHNVKALYRRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQKSLKQLQAESNKRDAKFYANMFARVTK--DSSVA   82 (91)
Q Consensus         5 ~~p~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~mf~~~~~--~~~~~   82 (91)
                      ++|+++.+++.+|.++...|++++|+..|+++++++|.+..+...+..+....++..++. ..+.+.....+.  ...+.
T Consensus         1 l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~-~~~~~a~~~~~~~~~~~~~   79 (112)
T 2kck_A            1 MVDQNPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAV-DCYNYVINVIEDEYNKDVW   79 (112)
T ss_dssp             CCCSSTTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHH-HHHHHHHHTSCCTTCHHHH
T ss_pred             CCCCcHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHH-HHHHHHHHhCcccchHHHH
Confidence            479999999999999999999999999999999999999999999999988888877764 356776666554  33443


Q ss_pred             hhhh
Q 034553           83 TKVG   86 (91)
Q Consensus        83 ~~~g   86 (91)
                      ..+|
T Consensus        80 ~~l~   83 (112)
T 2kck_A           80 AAKA   83 (112)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            3333

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.74  E-value=3.3e-08  Score=57.67  Aligned_cols=53  Identities=28%  Similarity=0.497  Sum_probs=49.0

Q ss_pred             cccccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Q 034553            2 VLDCDCHNVKALYRRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQKSLK   54 (91)
Q Consensus         2 al~~~p~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~~~~~l~~~~   54 (91)
                      +++++|+++.+++.+|.++..+|++++|+..|+++++++|++..+...+..+.
T Consensus        91 ~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~  143 (148)
T 2dba_A           91 AIEKDGGDVKALYRRSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNIS  143 (148)
T ss_dssp             HHHHTSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHH
T ss_pred             HHhhCccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHH
Confidence            56789999999999999999999999999999999999999999888877764

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1

Probab=98.73  E-value=3.9e-08  Score=66.10  Aligned_cols=83  Identities=13%  Similarity=0.112  Sum_probs=38.7

Q ss_pred             ccccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCchhh
Q 034553            3 LDCDCHNVKALYRRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQKSLKQLQAESNKRDAKFYANMFARVTKDSSVA   82 (91)
Q Consensus         3 l~~~p~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~mf~~~~~~~~~~   82 (91)
                      ++++|+++.+|+.+|.++...|++++|+..|+++++++|++..+...+..+....+...++. ..+.++....+....+.
T Consensus       264 l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~-~~~~~al~~~p~~~~~~  342 (388)
T 1w3b_A          264 IELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAV-RLYRKALEVFPEFAAAH  342 (388)
T ss_dssp             HHTCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHH-HHHHHHTTSCTTCHHHH
T ss_pred             HhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHcCCHHHHH-HHHHHHHhcCCCcHHHH
Confidence            34445555555555555555555555555555555555555555444444444444443332 23444444433333333


Q ss_pred             hhhh
Q 034553           83 TKVG   86 (91)
Q Consensus        83 ~~~g   86 (91)
                      ..+|
T Consensus       343 ~~l~  346 (388)
T 1w3b_A          343 SNLA  346 (388)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            3333

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=98.73  E-value=1.8e-08  Score=66.42  Aligned_cols=72  Identities=14%  Similarity=0.104  Sum_probs=56.2

Q ss_pred             cccccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 034553            2 VLDCDCHNVKALYRRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQKSLKQLQAESNKRDAKFYANMFAR   74 (91)
Q Consensus         2 al~~~p~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~mf~~   74 (91)
                      +|+++|+++.+|+.+|.++..+|++++|+.+|+++++++|++..+...+..+...+++..++.. .+.+.+..
T Consensus        30 al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~-~~~~al~l  101 (281)
T 2c2l_A           30 AITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQLEMESYDEAIA-NLQRAYSL  101 (281)
T ss_dssp             HHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHHTTCHHHHHH-HHHHHHHH
T ss_pred             HHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHH-HHHHHHHh
Confidence            5677888888888888888888888888888888888888888888888888777777766643 34554444

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}

Probab=98.73  E-value=5e-08  Score=59.28  Aligned_cols=76  Identities=11%  Similarity=0.097  Sum_probs=51.3

Q ss_pred             cccccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHH-HHHHHHH--HHHHHHHHHHhhhcccCC
Q 034553            2 VLDCDCHNVKALYRRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQKSL-KQLQAES--NKRDAKFYANMFARVTKD   78 (91)
Q Consensus         2 al~~~p~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~~~~~l~~~-~~~~~~~--~~~~~~~~~~mf~~~~~~   78 (91)
                      +++.+|+++.+|+.+|.++...|++++|+..|+++++++|++..+...+..+ ....+..  .++ ...+.+.....+..
T Consensus        36 al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~~A-~~~~~~al~~~p~~  114 (177)
T 2e2e_A           36 KIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQT-RAMIDKALALDSNE  114 (177)
T ss_dssp             HHHHCCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCHHH-HHHHHHHHHHCTTC
T ss_pred             HHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchHHH-HHHHHHHHHhCCCc
Confidence            4566788888888888888888888888888888888888887777777766 4444443  333 23455555544433

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}

Probab=98.72  E-value=2.3e-08  Score=65.47  Aligned_cols=58  Identities=24%  Similarity=0.235  Sum_probs=35.6

Q ss_pred             ccccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH
Q 034553            3 LDCDCHNVKALYRRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQKSLKQLQAES   60 (91)
Q Consensus         3 l~~~p~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~   60 (91)
                      ++++|+++.+++.+|.++..+|++++|+..|+++++++|++..+...+..+...+++.
T Consensus       299 ~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~  356 (359)
T 3ieg_A          299 LQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNENDQQIREGLEKAQRLLKQS  356 (359)
T ss_dssp             HHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHh
Confidence            4456666666666666666666666666666666666666666666666665555443

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}

Probab=98.72  E-value=4.1e-08  Score=57.67  Aligned_cols=67  Identities=16%  Similarity=0.059  Sum_probs=57.1

Q ss_pred             CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 034553            7 CHNVKALYRRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQKSLKQLQAESNKRDAKFYANMFAR   74 (91)
Q Consensus         7 p~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~mf~~   74 (91)
                      ++.+.++..+|.+++..|+|++|+..|+++++++|++..+...+..+...++++.++.. .+.+....
T Consensus         5 ~d~A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~-~~~~al~~   71 (127)
T 4gcn_A            5 TDAAIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQ-FCEKAVEV   71 (127)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH-HHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHH-HHHHHHHh
Confidence            45577899999999999999999999999999999999999999999999888877643 44554443

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1

Probab=98.72  E-value=4.8e-08  Score=65.64  Aligned_cols=86  Identities=14%  Similarity=0.098  Sum_probs=56.5

Q ss_pred             cccccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCchh
Q 034553            2 VLDCDCHNVKALYRRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQKSLKQLQAESNKRDAKFYANMFARVTKDSSV   81 (91)
Q Consensus         2 al~~~p~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~mf~~~~~~~~~   81 (91)
                      +++++|+++.+++.+|.++..+|++++|+..|+++++++|++..+...+..+....++..++. ..+.++....+....+
T Consensus       229 al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~-~~~~~al~~~p~~~~~  307 (388)
T 1w3b_A          229 ALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAE-DCYNTALRLCPTHADS  307 (388)
T ss_dssp             HHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHHHSCHHHHH-HHHHHHHHHCTTCHHH
T ss_pred             HHhhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHH-HHHHHHHhhCcccHHH
Confidence            345677777777777777777777777777777777777777777777766666666665553 3456666555555555


Q ss_pred             hhhhhhc
Q 034553           82 ATKVGYF   88 (91)
Q Consensus        82 ~~~~g~f   88 (91)
                      .+.+|..
T Consensus       308 ~~~l~~~  314 (388)
T 1w3b_A          308 LNNLANI  314 (388)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            5555443

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1

Probab=98.72  E-value=2.9e-08  Score=55.48  Aligned_cols=54  Identities=13%  Similarity=0.111  Sum_probs=49.6

Q ss_pred             cccccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
Q 034553            2 VLDCDCHNVKALYRRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQKSLKQ   55 (91)
Q Consensus         2 al~~~p~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~   55 (91)
                      +++++|+++.+++.+|.++..+|++++|+..++++++++|++..+...+..+..
T Consensus        64 ~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~  117 (118)
T 1elw_A           64 TVDLKPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNMEA  117 (118)
T ss_dssp             HHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHH
T ss_pred             HHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHhhc
Confidence            567899999999999999999999999999999999999999998888877653

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*

Probab=98.68  E-value=7.8e-08  Score=68.34  Aligned_cols=75  Identities=13%  Similarity=0.095  Sum_probs=42.0

Q ss_pred             cccccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccC
Q 034553            2 VLDCDCHNVKALYRRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQKSLKQLQAESNKRDAKFYANMFARVTK   77 (91)
Q Consensus         2 al~~~p~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~mf~~~~~   77 (91)
                      +++++|++..+++.+|.++..+|++++|+..|+++++++|++..+...+..+....++..++. ..+.+.....+.
T Consensus        49 al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~-~~~~~al~~~p~  123 (568)
T 2vsy_A           49 GLALHPGHPEAVARLGRVRWTQQRHAEAAVLLQQASDAAPEHPGIALWLGHALEDAGQAEAAA-AAYTRAHQLLPE  123 (568)
T ss_dssp             HHTTSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH-HHHHHHHHHCTT
T ss_pred             HHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHH-HHHHHHHHhCCC
Confidence            345566666666666666666666666666666666666666655555555555555554442 234444444333

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}

Probab=98.68  E-value=1.6e-07  Score=52.43  Aligned_cols=69  Identities=10%  Similarity=-0.061  Sum_probs=60.3

Q ss_pred             CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCC
Q 034553            9 NVKALYRRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQKSLKQLQAESNKRDAKFYANMFARVTKD   78 (91)
Q Consensus         9 ~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~mf~~~~~~   78 (91)
                      ++.+++.+|.+++..|+|++|+..|+++++++|++..+...+..+....++..++. ..+.+.....+..
T Consensus         3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~-~~~~~al~~~p~~   71 (111)
T 2l6j_A            3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAI-QMCQQGLRYTSTA   71 (111)
T ss_dssp             HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH-HHHHHHHTSCSST
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHH-HHHHHHHHhCCCc
Confidence            57899999999999999999999999999999999999999999999998888774 3577777665543

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1

Probab=98.68  E-value=6.4e-08  Score=54.83  Aligned_cols=57  Identities=25%  Similarity=0.112  Sum_probs=51.3

Q ss_pred             cccccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
Q 034553            2 VLDCDCHNVKALYRRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQKSLKQLQA   58 (91)
Q Consensus         2 al~~~p~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~   58 (91)
                      +++++|+++.+++.+|.++..+|++++|+..|+++++++|++..+...+..+...++
T Consensus        72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~  128 (131)
T 2vyi_A           72 AICIDPAYSKAYGRMGLALSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLR  128 (131)
T ss_dssp             HHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHT
T ss_pred             HHhcCccCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHh
Confidence            567899999999999999999999999999999999999999988888877766543

>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}

Probab=98.67  E-value=3.7e-08  Score=55.88  Aligned_cols=71  Identities=10%  Similarity=0.076  Sum_probs=46.8

Q ss_pred             cCCCHHHHHHHHHHHHHhCC---HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccC
Q 034553            6 DCHNVKALYRRAQVYMEIAD---LILAELDIKKAIEADPQNREVKLLQKSLKQLQAESNKRDAKFYANMFARVTK   77 (91)
Q Consensus         6 ~p~~~ka~~rrg~a~~~lg~---~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~mf~~~~~   77 (91)
                      +|+++..++.+|.+++..++   .++|...++++|++||++..+...+..+....+++.++ ...|.+++...+.
T Consensus         2 ~p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~A-i~~w~~~l~~~p~   75 (93)
T 3bee_A            2 NAVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEA-IDTWVLLLDSNDP   75 (93)
T ss_dssp             CCCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH-HHHHHHHHTCCCT
T ss_pred             CCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHH-HHHHHHHHhhCCC
Confidence            56677777777777765555   56777777777777777777777777766666666665 3356666655443

>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}

Probab=98.67  E-value=3.2e-08  Score=60.54  Aligned_cols=70  Identities=14%  Similarity=0.038  Sum_probs=57.6

Q ss_pred             cccccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCC--HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 034553            2 VLDCDCHNVKALYRRAQVYMEIADLILAELDIKKAIEADPQN--REVKLLQKSLKQLQAESNKRDAKFYANMF   72 (91)
Q Consensus         2 al~~~p~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~--~~~~~~l~~~~~~~~~~~~~~~~~~~~mf   72 (91)
                      +++++|+++.+++.+|.++..+|++++|+..|+++++++|+.  ..++..+..+....+...+... .|++.+
T Consensus       100 al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~-~y~~al  171 (176)
T 2r5s_A          100 ELAANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIAS-KYRRQL  171 (176)
T ss_dssp             HHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHH-HHHHHH
T ss_pred             HHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHH-HHHHHH
Confidence            577899999999999999999999999999999999999975  4688888888877776655433 445444

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A

Probab=98.66  E-value=5e-07  Score=53.82  Aligned_cols=76  Identities=11%  Similarity=0.096  Sum_probs=53.0

Q ss_pred             cccccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCC
Q 034553            2 VLDCDCHNVKALYRRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQKSLKQLQAESNKRDAKFYANMFARVTKD   78 (91)
Q Consensus         2 al~~~p~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~mf~~~~~~   78 (91)
                      +++.+|.++.+++..|.++...|++++|+..++++++++|++..+...+..+....++..++. ..+.++....+..
T Consensus        34 ~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~-~~~~~~~~~~~~~  109 (186)
T 3as5_A           34 VYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPDNVKVATVLGLTYVQVQKYDLAV-PLLIKVAEANPIN  109 (186)
T ss_dssp             TCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHH-HHHHHHHHHCTTC
T ss_pred             HHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHH-HHHHHHHhcCcHh
Confidence            566777788888888888888888888888888888888877777777777666666655543 2455555444433

>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}

Probab=98.65  E-value=7.1e-08  Score=55.37  Aligned_cols=55  Identities=9%  Similarity=0.095  Sum_probs=48.4

Q ss_pred             cccccCCC---HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Q 034553            2 VLDCDCHN---VKALYRRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQKSLKQL   56 (91)
Q Consensus         2 al~~~p~~---~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~   56 (91)
                      +++.+|++   +.+++.+|.++..+|++++|+..|+++++..|++..+...+..+...
T Consensus        65 ~~~~~p~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~l~~l  122 (129)
T 2xev_A           65 LVSRYPTHDKAAGGLLKLGLSQYGEGKNTEAQQTLQQVATQYPGSDAARVAQERLQSI  122 (129)
T ss_dssp             HHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHH
T ss_pred             HHHHCCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHH
Confidence            56788999   99999999999999999999999999999999998777766665543

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A

Probab=98.65  E-value=2.2e-07  Score=55.06  Aligned_cols=79  Identities=14%  Similarity=0.059  Sum_probs=67.7

Q ss_pred             cccccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCchh
Q 034553            2 VLDCDCHNVKALYRRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQKSLKQLQAESNKRDAKFYANMFARVTKDSSV   81 (91)
Q Consensus         2 al~~~p~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~mf~~~~~~~~~   81 (91)
                      +++++|.++.+++.+|.++..+|++++|+..++++++++|++..+...+..+....++..++. ..+.+.....+.....
T Consensus        39 al~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~-~~~~~a~~~~p~~~~~  117 (166)
T 1a17_A           39 AIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRAAL-RDYETVVKVKPHDKDA  117 (166)
T ss_dssp             HHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH-HHHHHHHHHSTTCHHH
T ss_pred             HHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhccHHHHH-HHHHHHHHhCCCCHHH
Confidence            577899999999999999999999999999999999999999999999999988888887764 4567777665554443

>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}

Probab=98.65  E-value=3.3e-08  Score=60.49  Aligned_cols=50  Identities=14%  Similarity=0.001  Sum_probs=43.7

Q ss_pred             CcccccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHH
Q 034553            1 MVLDCDCHNVKALYRRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQK   51 (91)
Q Consensus         1 ~al~~~p~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~~~~~l~   51 (91)
                      ++++++|+++.+++.+|.++..+|++++|+..|++++.++| +..+...+.
T Consensus        31 ~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p-~~~~~~~~~   80 (176)
T 2r5s_A           31 TLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLEYQ-DNSYKSLIA   80 (176)
T ss_dssp             TSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC-CHHHHHHHH
T ss_pred             HHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC-ChHHHHHHH
Confidence            46889999999999999999999999999999999999999 776554443

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}

Probab=98.63  E-value=8.3e-08  Score=67.45  Aligned_cols=84  Identities=11%  Similarity=-0.037  Sum_probs=59.2

Q ss_pred             cccccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH---------HHHHHHHHHHHHHhh
Q 034553            2 VLDCDCHNVKALYRRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQKSLKQLQ---------AESNKRDAKFYANMF   72 (91)
Q Consensus         2 al~~~p~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~---------~~~~~~~~~~~~~mf   72 (91)
                      +|+++|+++.+|+.+|.++..+|++++|+..|+++++++|+ ..+...+..+....         ++..++. ..+++..
T Consensus       129 al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~-~~~~~al  206 (474)
T 4abn_A          129 AVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSGALTHCKN-KVSLQNLSMVLRQLQTDSGDEHSRHVMDSV-RQAKLAV  206 (474)
T ss_dssp             HHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCCC-HHHHHHHHHHHTTCCCSCHHHHHHHHHHHH-HHHHHHH
T ss_pred             HHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-HHHHHHHHHHHHHhccCChhhhhhhHHHHH-HHHHHHH
Confidence            56778888888888888888888888888888888888887 57777777777666         6666553 3566666


Q ss_pred             hcccCCchhhhhhhh
Q 034553           73 ARVTKDSSVATKVGY   87 (91)
Q Consensus        73 ~~~~~~~~~~~~~g~   87 (91)
                      ...+........+|.
T Consensus       207 ~~~p~~~~~~~~lg~  221 (474)
T 4abn_A          207 QMDVLDGRSWYILGN  221 (474)
T ss_dssp             HHCTTCHHHHHHHHH
T ss_pred             HhCCCCHHHHHHHHH
Confidence            665555555555543

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}

Probab=98.63  E-value=1.4e-07  Score=62.84  Aligned_cols=83  Identities=7%  Similarity=-0.037  Sum_probs=47.2

Q ss_pred             ccccCC--CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCch
Q 034553            3 LDCDCH--NVKALYRRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQKSLKQLQAESNKRDAKFYANMFARVTKDSS   80 (91)
Q Consensus         3 l~~~p~--~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~mf~~~~~~~~   80 (91)
                      ++++|+  ++.+++.+|.++..+|++++|+..|+++++++|++..+...+..+....+...++. ..+.++....+....
T Consensus       204 l~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~-~~~~~al~~~p~~~~  282 (365)
T 4eqf_A          204 AHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAV-EAYTRALEIQPGFIR  282 (365)
T ss_dssp             HHHSCSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH-HHHHHHHHHCTTCHH
T ss_pred             HHhCcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHH-HHHHHHHhcCCCchH
Confidence            445565  56666666666666666666666666666666666666666666665555555542 244555544444333


Q ss_pred             hhhhhh
Q 034553           81 VATKVG   86 (91)
Q Consensus        81 ~~~~~g   86 (91)
                      +...+|
T Consensus       283 ~~~~l~  288 (365)
T 4eqf_A          283 SRYNLG  288 (365)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            344333

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*

Probab=98.63  E-value=1.6e-07  Score=66.68  Aligned_cols=86  Identities=10%  Similarity=0.123  Sum_probs=67.2

Q ss_pred             CcccccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCch
Q 034553            1 MVLDCDCHNVKALYRRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQKSLKQLQAESNKRDAKFYANMFARVTKDSS   80 (91)
Q Consensus         1 ~al~~~p~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~mf~~~~~~~~   80 (91)
                      ++++++|++..+|+.+|.++..+|++++|+..|+++++++|++..+...+..+....++..++. ..+.+.....+....
T Consensus        14 ~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~-~~~~~al~~~p~~~~   92 (568)
T 2vsy_A           14 AAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAA-VLLQQASDAAPEHPG   92 (568)
T ss_dssp             -------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHH-HHHHHHHHHCTTCHH
T ss_pred             HHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHH-HHHHHHHhcCCCCHH
Confidence            4688999999999999999999999999999999999999999999999999999888887774 456777776665555


Q ss_pred             hhhhhhh
Q 034553           81 VATKVGY   87 (91)
Q Consensus        81 ~~~~~g~   87 (91)
                      ...++|.
T Consensus        93 ~~~~la~   99 (568)
T 2vsy_A           93 IALWLGH   99 (568)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            5555543

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=98.63  E-value=9.6e-08  Score=69.96  Aligned_cols=84  Identities=6%  Similarity=0.046  Sum_probs=73.8

Q ss_pred             cccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCchhhh
Q 034553            4 DCDCHNVKALYRRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQKSLKQLQAESNKRDAKFYANMFARVTKDSSVAT   83 (91)
Q Consensus         4 ~~~p~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~mf~~~~~~~~~~~   83 (91)
                      +.+|++..+++.+|.+++.+|++++|+..|+++++++|++..+...+..+....++..++.. .|.+.....+.......
T Consensus       427 ~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~-~~~~al~l~P~~~~~~~  505 (681)
T 2pzi_A          427 VDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWRWRLVWYRAVAELLTGDYDSATK-HFTEVLDTFPGELAPKL  505 (681)
T ss_dssp             -CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTCHHHHHH-HHHHHHHHSTTCSHHHH
T ss_pred             cccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchHHHHHHHHHHHHHcCCHHHHHH-HHHHHHHhCCCChHHHH
Confidence            78899999999999999999999999999999999999999999999999999998888754 67888887777777777


Q ss_pred             hhhhc
Q 034553           84 KVGYF   88 (91)
Q Consensus        84 ~~g~f   88 (91)
                      ++|..
T Consensus       506 ~lg~~  510 (681)
T 2pzi_A          506 ALAAT  510 (681)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            66653

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}

Probab=98.62  E-value=6.1e-08  Score=55.42  Aligned_cols=55  Identities=16%  Similarity=0.092  Sum_probs=49.7

Q ss_pred             cccccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Q 034553            2 VLDCDCHNVKALYRRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQKSLKQL   56 (91)
Q Consensus         2 al~~~p~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~   56 (91)
                      +++++|+++.+++.+|.++..+|++++|+..|+++++++|++..+...+..+...
T Consensus        76 a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~  130 (133)
T 2lni_A           76 CIQLEPTFIKGYTRKAAALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMA  130 (133)
T ss_dssp             HHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHH
T ss_pred             HHHhCCCchHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHH
Confidence            5678999999999999999999999999999999999999998888777776543

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}

Probab=98.62  E-value=1.4e-07  Score=59.27  Aligned_cols=73  Identities=15%  Similarity=0.105  Sum_probs=51.9

Q ss_pred             cccccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 034553            2 VLDCDCHNVKALYRRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQKSLKQLQAESNKRDAKFYANMFARV   75 (91)
Q Consensus         2 al~~~p~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~mf~~~   75 (91)
                      +++++|.++.+++.+|.++..+|++++|+..|+++++++|++..+...+..+....++..++. ..+.+.....
T Consensus       165 a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~-~~~~~a~~~~  237 (258)
T 3uq3_A          165 MIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASAL-ETLDAARTKD  237 (258)
T ss_dssp             HHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH-HHHHHHHHHH
T ss_pred             HHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhHHHHH-HHHHHHHHhC
Confidence            456677777888888888888888888888888888888877777777777777776666553 2445544443

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1

Probab=98.62  E-value=1.5e-07  Score=59.85  Aligned_cols=72  Identities=8%  Similarity=-0.004  Sum_probs=44.5

Q ss_pred             cccccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 034553            2 VLDCDCHNVKALYRRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQKSLKQLQAESNKRDAKFYANMFAR   74 (91)
Q Consensus         2 al~~~p~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~mf~~   74 (91)
                      +++++|+++.+++.+|.++..+|++++|+..|+++++++|++..+...+..+....++..++. ..+.++...
T Consensus        69 al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~-~~~~~a~~~  140 (275)
T 1xnf_A           69 ALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQ-DDLLAFYQD  140 (275)
T ss_dssp             HHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHH-HHHHHHHHH
T ss_pred             HHHcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHH-HHHHHHHHh
Confidence            345566666666666666666666666666666666666666666666666666555555542 234444443

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*

Probab=98.61  E-value=1.3e-07  Score=58.53  Aligned_cols=62  Identities=24%  Similarity=0.223  Sum_probs=36.0

Q ss_pred             cccccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCH----------------HHHHHHHHHHHHHHHHHHH
Q 034553            2 VLDCDCHNVKALYRRAQVYMEIADLILAELDIKKAIEADPQNR----------------EVKLLQKSLKQLQAESNKR   63 (91)
Q Consensus         2 al~~~p~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~----------------~~~~~l~~~~~~~~~~~~~   63 (91)
                      +++++|+++.+|+.+|.++..+|++++|+..|++++++.|++.                .+...+..+....++..++
T Consensus        63 al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A  140 (213)
T 1hh8_A           63 SINRDKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKA  140 (213)
T ss_dssp             HHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHhCccchHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHH
Confidence            3455566666666666666666666666666666666555544                5555555555555555444

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A

Probab=98.61  E-value=1.7e-07  Score=62.05  Aligned_cols=74  Identities=7%  Similarity=-0.053  Sum_probs=54.7

Q ss_pred             cccccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccc
Q 034553            2 VLDCDCHNVKALYRRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQKSLKQLQAESNKRDAKFYANMFARVT   76 (91)
Q Consensus         2 al~~~p~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~mf~~~~   76 (91)
                      +++++|+++.+++.+|.++..+|++++|+..|+++++++|++..+...+..+....++..++. ..+.++....+
T Consensus       243 al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~-~~~~~al~~~~  316 (368)
T 1fch_A          243 ALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAV-EHFLEALNMQR  316 (368)
T ss_dssp             HHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHH-HHHHHHHHHHH
T ss_pred             HHHhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHH-HHHHHHHHhCC
Confidence            456678888888888888888888888888888888888888888777777777777766653 34555555443

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1

Probab=98.59  E-value=3.3e-07  Score=57.27  Aligned_cols=79  Identities=9%  Similarity=0.084  Sum_probs=52.4

Q ss_pred             cccccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCchh
Q 034553            2 VLDCDCHNVKALYRRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQKSLKQLQAESNKRDAKFYANMFARVTKDSSV   81 (91)
Q Consensus         2 al~~~p~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~mf~~~~~~~~~   81 (91)
                      +++.+|+++.+++.+|.++..+|++++|+..|+++++++|++..+...+..+....+...++. ..+.+++...+....+
T Consensus        49 ~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~-~~~~~~~~~~~~~~~~  127 (243)
T 2q7f_A           49 AIEENKEDAIPYINFANLLSSVNELERALAFYDKALELDSSAATAYYGAGNVYVVKEMYKEAK-DMFEKALRAGMENGDL  127 (243)
T ss_dssp             HHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH-HHHHHHHHHTCCSHHH
T ss_pred             HHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHhccHHHHH-HHHHHHHHhCCCCHHH
Confidence            455677777777777777777777777777777777777777777777776666666655543 2455555544433333

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A

Probab=98.58  E-value=1.2e-07  Score=53.84  Aligned_cols=72  Identities=21%  Similarity=0.173  Sum_probs=52.6

Q ss_pred             cccccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCC-------HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 034553            2 VLDCDCHNVKALYRRAQVYMEIADLILAELDIKKAIEADPQN-------REVKLLQKSLKQLQAESNKRDAKFYANMFAR   74 (91)
Q Consensus         2 al~~~p~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~-------~~~~~~l~~~~~~~~~~~~~~~~~~~~mf~~   74 (91)
                      +++++|.++.+++.+|.++..+|++++|+..|++++.+.|++       ..+...+..+....+...++. ..+.+....
T Consensus        30 a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~-~~~~~~~~~  108 (131)
T 1elr_A           30 AKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIGNSYFKEEKYKDAI-HFYNKSLAE  108 (131)
T ss_dssp             HHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHTTCHHHHH-HHHHHHHHH
T ss_pred             HHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHHHHHHHHHhccHHHHH-HHHHHHHHh
Confidence            456778888888888888888888888888888888887766       666777777776666666553 345555554

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A

Probab=98.57  E-value=7.5e-08  Score=54.24  Aligned_cols=41  Identities=17%  Similarity=0.192  Sum_probs=39.0

Q ss_pred             cccccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCC
Q 034553            2 VLDCDCHNVKALYRRAQVYMEIADLILAELDIKKAIEADPQ   42 (91)
Q Consensus         2 al~~~p~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~   42 (91)
                      +++++|+++.+|+.+|.++..+|++++|+..|++++++.|+
T Consensus        33 al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~   73 (100)
T 3ma5_A           33 LVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVARE   73 (100)
T ss_dssp             HHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhc
Confidence            67899999999999999999999999999999999999875

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}

Probab=98.57  E-value=1.2e-07  Score=63.07  Aligned_cols=73  Identities=11%  Similarity=0.019  Sum_probs=60.4

Q ss_pred             cccccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 034553            2 VLDCDCHNVKALYRRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQKSLKQLQAESNKRDAKFYANMFARV   75 (91)
Q Consensus         2 al~~~p~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~mf~~~   75 (91)
                      +++++|+++.+|+.+|.++..+|++++|+..|+++++++|++..+...+..+....++..++. ..+.++....
T Consensus        91 al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~-~~~~~al~~~  163 (365)
T 4eqf_A           91 AILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAVSYTNTSHQQDAC-EALKNWIKQN  163 (365)
T ss_dssp             HHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH-HHHHHHHHHC
T ss_pred             HHHhCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHccccHHHHH-HHHHHHHHhC
Confidence            567789999999999999999999999999999999999999988888888888887777764 3556665543

>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}

Probab=98.57  E-value=6.2e-07  Score=50.71  Aligned_cols=44  Identities=16%  Similarity=-0.077  Sum_probs=41.2

Q ss_pred             CcccccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCH
Q 034553            1 MVLDCDCHNVKALYRRAQVYMEIADLILAELDIKKAIEADPQNR   44 (91)
Q Consensus         1 ~al~~~p~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~   44 (91)
                      +||++||+++++++-.|.+++..|+|++|+..++++++.+|.++
T Consensus        34 ~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~~~   77 (93)
T 3bee_A           34 QALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDPNL   77 (93)
T ss_dssp             HHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCTTC
T ss_pred             HHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCc
Confidence            36889999999999999999999999999999999999999843

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}

Probab=98.56  E-value=9.9e-08  Score=67.07  Aligned_cols=62  Identities=16%  Similarity=0.030  Sum_probs=43.3

Q ss_pred             cccccC---CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
Q 034553            2 VLDCDC---HNVKALYRRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQKSLKQLQAESNKR   63 (91)
Q Consensus         2 al~~~p---~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~   63 (91)
                      +++++|   +++.+|+.+|.++..+|++++|+..|+++++++|++..+...+..+...+++..++
T Consensus       247 al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg~~~eA  311 (474)
T 4abn_A          247 AEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSL  311 (474)
T ss_dssp             HHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHH
Confidence            455666   77777777777777777777777777777777777777777777776666665544

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A

Probab=98.56  E-value=4.3e-07  Score=51.30  Aligned_cols=84  Identities=19%  Similarity=0.218  Sum_probs=58.2

Q ss_pred             cccccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCchh
Q 034553            2 VLDCDCHNVKALYRRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQKSLKQLQAESNKRDAKFYANMFARVTKDSSV   81 (91)
Q Consensus         2 al~~~p~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~mf~~~~~~~~~   81 (91)
                      +++.+|.++.+++..|.++...|++++|+..+++++.++|.+..+...+..+....++..++. ..+..+....+....+
T Consensus        27 ~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~-~~~~~~~~~~~~~~~~  105 (136)
T 2fo7_A           27 ALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAI-EYYQKALELDPRSAEA  105 (136)
T ss_dssp             HHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHH-HHHHHHHHHCTTCHHH
T ss_pred             HHHcCCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHhcCHHHHH-HHHHHHHHhCCCChHH
Confidence            355678888888888888888888888888888888888888877777777766666665553 3455555544433333


Q ss_pred             hhhhh
Q 034553           82 ATKVG   86 (91)
Q Consensus        82 ~~~~g   86 (91)
                      ...+|
T Consensus       106 ~~~la  110 (136)
T 2fo7_A          106 WYNLG  110 (136)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            33333

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A

Probab=98.56  E-value=1.4e-07  Score=64.81  Aligned_cols=82  Identities=12%  Similarity=0.026  Sum_probs=69.5

Q ss_pred             cccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCchhhh
Q 034553            4 DCDCHNVKALYRRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQKSLKQLQAESNKRDAKFYANMFARVTKDSSVAT   83 (91)
Q Consensus         4 ~~~p~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~mf~~~~~~~~~~~   83 (91)
                      .++|.+..+|+.+|.+++.+|+|++|+..|+++++++|++..+...+..+...++++.++. ..+++.....+....+..
T Consensus       267 ~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~-~~l~~Al~l~P~~~~~~~  345 (370)
T 1ihg_A          267 KLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQAL-ADLKKAQEIAPEDKAIQA  345 (370)
T ss_dssp             GGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHH-HHHHHHHHHCTTCHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHH-HHHHHHHHhCCCCHHHHH
Confidence            3788999999999999999999999999999999999999999999999999998888874 457777777665555544


Q ss_pred             hhh
Q 034553           84 KVG   86 (91)
Q Consensus        84 ~~g   86 (91)
                      .++
T Consensus       346 ~l~  348 (370)
T 1ihg_A          346 ELL  348 (370)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            443

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}

Probab=98.56  E-value=2.5e-07  Score=56.14  Aligned_cols=75  Identities=17%  Similarity=0.154  Sum_probs=59.7

Q ss_pred             cccccCCCHHHHHHHHHH-HHHhCCH--HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccC
Q 034553            2 VLDCDCHNVKALYRRAQV-YMEIADL--ILAELDIKKAIEADPQNREVKLLQKSLKQLQAESNKRDAKFYANMFARVTK   77 (91)
Q Consensus         2 al~~~p~~~ka~~rrg~a-~~~lg~~--~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~mf~~~~~   77 (91)
                      +++++|+++.+++.+|.+ +...|++  ++|+..|+++++++|++..+...+..+....+...++. ..+.+.+...+.
T Consensus        70 al~~~p~~~~~~~~la~~l~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~-~~~~~al~~~p~  147 (177)
T 2e2e_A           70 ALQLRGENAELYAALATVLYYQASQHMTAQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAI-ELWQKVMDLNSP  147 (177)
T ss_dssp             HHHHHCSCHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH-HHHHHHHHTCCT
T ss_pred             HHHcCCCCHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHH-HHHHHHHhhCCC
Confidence            567788888899999988 7788888  89999999999999988888888888888877777664 356666665544

>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7

Probab=98.56  E-value=1.3e-07  Score=62.50  Aligned_cols=87  Identities=20%  Similarity=0.123  Sum_probs=52.4

Q ss_pred             cccccCCCHHHHHHHHHHHHH-------hCCH-------HHHHHHHHHHHH-HCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 034553            2 VLDCDCHNVKALYRRAQVYME-------IADL-------ILAELDIKKAIE-ADPQNREVKLLQKSLKQLQAESNKRDAK   66 (91)
Q Consensus         2 al~~~p~~~ka~~rrg~a~~~-------lg~~-------~~A~~~~~~al~-l~p~~~~~~~~l~~~~~~~~~~~~~~~~   66 (91)
                      +|..+|.++.+|+..|..+..       +|++       ++|+..|++|++ ++|++..++..+..+....+...++ ..
T Consensus        42 al~~~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~~~~~~~A-~~  120 (308)
T 2ond_A           42 CLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKV-HS  120 (308)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHH-HH
T ss_pred             HHHHcCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHH-HH
Confidence            455667777777777766653       3664       677777777777 5777766666666666665555544 33


Q ss_pred             HHHHhhhcccCCch-hhhhhhhcc
Q 034553           67 FYANMFARVTKDSS-VATKVGYFA   89 (91)
Q Consensus        67 ~~~~mf~~~~~~~~-~~~~~g~f~   89 (91)
                      .|.+.....+.... +...+|.|+
T Consensus       121 ~~~~al~~~p~~~~~~~~~~~~~~  144 (308)
T 2ond_A          121 IYNRLLAIEDIDPTLVYIQYMKFA  144 (308)
T ss_dssp             HHHHHHTSSSSCTHHHHHHHHHHH
T ss_pred             HHHHHHhccccCccHHHHHHHHHH
Confidence            55666655444333 455555443

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}

Probab=98.55  E-value=5.3e-08  Score=65.85  Aligned_cols=75  Identities=7%  Similarity=0.025  Sum_probs=56.2

Q ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCchhhhhhh
Q 034553           11 KALYRRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQKSLKQLQAESNKRDAKFYANMFARVTKDSSVATKVG   86 (91)
Q Consensus        11 ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~mf~~~~~~~~~~~~~g   86 (91)
                      .+|+.+|.++..+|+|++|+..|+++++++|++..+...+..+...+++..++.. .+.+.+...+....+...++
T Consensus       231 ~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~-~l~~al~l~p~~~~a~~~L~  305 (338)
T 2if4_A          231 PCHLNIAACLIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARD-DFRKAQKYAPDDKAIRRELR  305 (338)
T ss_dssp             HHHHHHHHHHHTTTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHH-HHHHTTC-------------
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHH-HHHHHHHHCCCCHHHHHHHH
Confidence            4999999999999999999999999999999999999999999999988888743 57777766655555554444

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}

Probab=98.55  E-value=2.4e-07  Score=60.11  Aligned_cols=74  Identities=9%  Similarity=-0.038  Sum_probs=38.1

Q ss_pred             ccccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccC
Q 034553            3 LDCDCHNVKALYRRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQKSLKQLQAESNKRDAKFYANMFARVTK   77 (91)
Q Consensus         3 l~~~p~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~mf~~~~~   77 (91)
                      ++++|.++.+|+.+|.++..+|++++|+..|++++++.|++..+...+..+....+...++. ..+.+.....+.
T Consensus       118 ~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~-~~~~~al~~~~~  191 (330)
T 3hym_B          118 TTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKLAE-RFFSQALSIAPE  191 (330)
T ss_dssp             HTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCSHHHHHHHHHHHHTTCHHHHH-HHHHHHHTTCTT
T ss_pred             HHhCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhHHHHH-HHHHHHHHhCCC
Confidence            44555555555555555555555555555555555555555555555555544444444432 234444444333

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}

Probab=98.55  E-value=2.7e-07  Score=60.31  Aligned_cols=74  Identities=22%  Similarity=0.268  Sum_probs=64.3

Q ss_pred             cccccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccc
Q 034553            2 VLDCDCHNVKALYRRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQKSLKQLQAESNKRDAKFYANMFARVT   76 (91)
Q Consensus         2 al~~~p~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~mf~~~~   76 (91)
                      +++.+|+++.+++.+|.++..+|++++|+..|+++++++|++..+...+..+....++..++. ..+.++....+
T Consensus        29 ~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~-~~~~~~~~~~~  102 (359)
T 3ieg_A           29 AVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLLLKQGKLDEAE-DDFKKVLKSNP  102 (359)
T ss_dssp             HHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHH-HHHHHHHTSCC
T ss_pred             HHhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHcCChHHHH-HHHHHHHhcCC
Confidence            567899999999999999999999999999999999999999999999999988888887764 35666666544

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A

Probab=98.55  E-value=1.4e-07  Score=53.52  Aligned_cols=58  Identities=16%  Similarity=0.122  Sum_probs=49.9

Q ss_pred             cccccCCC-------HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH
Q 034553            2 VLDCDCHN-------VKALYRRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQKSLKQLQAES   60 (91)
Q Consensus         2 al~~~p~~-------~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~   60 (91)
                      +++++|.+       +.+++.+|.++..+|++++|+..|++++++.| +..+...+..+...+++.
T Consensus        64 ~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~  128 (131)
T 1elr_A           64 AIEVGRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHR-TPDVLKKCQQAEKILKEQ  128 (131)
T ss_dssp             HHHHHHHSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHHHC
T ss_pred             HHhhccccchhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHHHh
Confidence            45566666       99999999999999999999999999999999 688888888887776654

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}

Probab=98.54  E-value=2.8e-07  Score=52.42  Aligned_cols=57  Identities=16%  Similarity=0.026  Sum_probs=46.0

Q ss_pred             cccccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCC--CHHHHHHHHHHHHHHH
Q 034553            2 VLDCDCHNVKALYRRAQVYMEIADLILAELDIKKAIEADPQ--NREVKLLQKSLKQLQA   58 (91)
Q Consensus         2 al~~~p~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~--~~~~~~~l~~~~~~~~   58 (91)
                      +++++|+++.+|+.+|.++..+|++++|+..|+++++++|+  +..+...+..+...++
T Consensus        45 al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~l~~~l~~l~  103 (115)
T 2kat_A           45 ALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLAAAQSRGDQQVVKELQVFLRRLA  103 (115)
T ss_dssp             HHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred             HHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHhc
Confidence            57889999999999999999999999999999999999885  4444444444443333

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A

Probab=98.54  E-value=8.7e-07  Score=49.62  Aligned_cols=81  Identities=21%  Similarity=0.212  Sum_probs=61.2

Q ss_pred             ccCCC-HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCchhhh
Q 034553            5 CDCHN-VKALYRRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQKSLKQLQAESNKRDAKFYANMFARVTKDSSVAT   83 (91)
Q Consensus         5 ~~p~~-~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~mf~~~~~~~~~~~   83 (91)
                      .+|.+ +.+++..|.++...|++++|+..|++++.++|++..+...+..+....++..++. ..+.++....+....+..
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~-~~~~~~~~~~~~~~~~~~   81 (125)
T 1na0_A            3 MDPGNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAI-EYYQKALELDPNNAEAWY   81 (125)
T ss_dssp             ----CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH-HHHHHHHHHCTTCHHHHH
T ss_pred             CCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHH-HHHHHHHHhCCccHHHHH
Confidence            56766 8899999999999999999999999999999999999888888888777776663 356666665444433333


Q ss_pred             hhh
Q 034553           84 KVG   86 (91)
Q Consensus        84 ~~g   86 (91)
                      .+|
T Consensus        82 ~la   84 (125)
T 1na0_A           82 NLG   84 (125)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            333

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1

Probab=98.53  E-value=7.7e-07  Score=51.74  Aligned_cols=75  Identities=12%  Similarity=0.062  Sum_probs=63.3

Q ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCchhhhhhh
Q 034553           11 KALYRRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQKSLKQLQAESNKRDAKFYANMFARVTKDSSVATKVG   86 (91)
Q Consensus        11 ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~mf~~~~~~~~~~~~~g   86 (91)
                      ..++.+|.+++..|++++|+..|+++++++|++..++..+..+....++..++. ..+++.....+........+|
T Consensus        18 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~-~~~~~al~l~P~~~~~~~~la   92 (121)
T 1hxi_A           18 ENPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAI-IALNHARMLDPKDIAVHAALA   92 (121)
T ss_dssp             SCHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHH-HHHHHHHHHCTTCHHHHHHHH
T ss_pred             hhHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHH-HHHHHHHHhCCCCHHHHHHHH
Confidence            358999999999999999999999999999999999999999999998888775 457777777666555554444

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}

Probab=98.52  E-value=2.2e-07  Score=58.32  Aligned_cols=83  Identities=6%  Similarity=-0.079  Sum_probs=67.9

Q ss_pred             ccccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCchhh
Q 034553            3 LDCDCHNVKALYRRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQKSLKQLQAESNKRDAKFYANMFARVTKDSSVA   82 (91)
Q Consensus         3 l~~~p~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~mf~~~~~~~~~~   82 (91)
                      +..+|.++.+++.+|.++..+|++++|+..|+++++++|++..+...+..+....++..++. ..+.+.....+......
T Consensus       132 ~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~-~~~~~al~~~~~~~~~~  210 (258)
T 3uq3_A          132 AYVNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAI-ADCNKAIEKDPNFVRAY  210 (258)
T ss_dssp             HHCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH-HHHHHHHHHCTTCHHHH
T ss_pred             HHcCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHH-HHHHHHHHhCHHHHHHH
Confidence            45789999999999999999999999999999999999999999999999988888877764 35666666655444444


Q ss_pred             hhhh
Q 034553           83 TKVG   86 (91)
Q Consensus        83 ~~~g   86 (91)
                      ...|
T Consensus       211 ~~l~  214 (258)
T 3uq3_A          211 IRKA  214 (258)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            4443

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A

Probab=98.52  E-value=5.5e-07  Score=53.64  Aligned_cols=61  Identities=21%  Similarity=0.129  Sum_probs=36.6

Q ss_pred             ccccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
Q 034553            3 LDCDCHNVKALYRRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQKSLKQLQAESNKR   63 (91)
Q Consensus         3 l~~~p~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~   63 (91)
                      ++.+|.++.+++.+|.++...|++++|+..+++++.++|++..+...+..+....+...++
T Consensus        69 ~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A  129 (186)
T 3as5_A           69 LADAPDNVKVATVLGLTYVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEA  129 (186)
T ss_dssp             HHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred             HhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHH
Confidence            4455666666666666666666666666666666666666666555555555555444443

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A

Probab=98.52  E-value=4.2e-07  Score=60.09  Aligned_cols=85  Identities=8%  Similarity=-0.051  Sum_probs=70.9

Q ss_pred             cccccCC--CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCc
Q 034553            2 VLDCDCH--NVKALYRRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQKSLKQLQAESNKRDAKFYANMFARVTKDS   79 (91)
Q Consensus         2 al~~~p~--~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~mf~~~~~~~   79 (91)
                      +++++|+  ++.+++.+|.++...|++++|+..|+++++++|++..+...+..+....++..++. ..+.++....+...
T Consensus       207 a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~-~~~~~al~~~~~~~  285 (368)
T 1fch_A          207 AVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAV-AAYRRALELQPGYI  285 (368)
T ss_dssp             HHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH-HHHHHHHHHCTTCH
T ss_pred             HHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHcCCHHHHH-HHHHHHHHhCCCcH
Confidence            4677898  89999999999999999999999999999999999999999999998888887764 45777776655555


Q ss_pred             hhhhhhhh
Q 034553           80 SVATKVGY   87 (91)
Q Consensus        80 ~~~~~~g~   87 (91)
                      .....+|.
T Consensus       286 ~~~~~l~~  293 (368)
T 1fch_A          286 RSRYNLGI  293 (368)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            55555543

>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}

Probab=98.51  E-value=1.3e-06  Score=55.97  Aligned_cols=75  Identities=13%  Similarity=0.170  Sum_probs=51.7

Q ss_pred             cccccCCC---HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCH---HHHHHHHHHHHH--------HHHHHHHHHHH
Q 034553            2 VLDCDCHN---VKALYRRAQVYMEIADLILAELDIKKAIEADPQNR---EVKLLQKSLKQL--------QAESNKRDAKF   67 (91)
Q Consensus         2 al~~~p~~---~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~---~~~~~l~~~~~~--------~~~~~~~~~~~   67 (91)
                      +++.+|++   +.+++.+|.+++.+|++++|+..|++++++.|+++   .+...+..+...        .+...++. ..
T Consensus        41 ~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~-~~  119 (261)
T 3qky_A           41 VFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEYERAMCYYKLSPPYELDQTDTRKAI-EA  119 (261)
T ss_dssp             HGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHCCCTTSCCHHHHHHH-HH
T ss_pred             HHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHHHHHHHHHHhcccccccchhHHHHH-HH
Confidence            46677777   78888888888888888888888888888877553   455566666655        55655553 34


Q ss_pred             HHHhhhcccC
Q 034553           68 YANMFARVTK   77 (91)
Q Consensus        68 ~~~mf~~~~~   77 (91)
                      +.++....+.
T Consensus       120 ~~~~l~~~p~  129 (261)
T 3qky_A          120 FQLFIDRYPN  129 (261)
T ss_dssp             HHHHHHHCTT
T ss_pred             HHHHHHHCcC
Confidence            5666555544

>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}

Probab=98.51  E-value=4.5e-07  Score=61.35  Aligned_cols=88  Identities=9%  Similarity=0.022  Sum_probs=73.6

Q ss_pred             cccccCCCHHHHHHHHHHHHHhC--CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH------HHHHHHHHHHHhhh
Q 034553            2 VLDCDCHNVKALYRRAQVYMEIA--DLILAELDIKKAIEADPQNREVKLLQKSLKQLQAE------SNKRDAKFYANMFA   73 (91)
Q Consensus         2 al~~~p~~~ka~~rrg~a~~~lg--~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~------~~~~~~~~~~~mf~   73 (91)
                      +|.++|++..+|+.|+.++..++  .+++++..+..++.++|++..++...+.+-..+..      .-+.+...+.+++.
T Consensus        59 ~L~~nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~l~~~~~~~~EL~~~~~~l~  138 (306)
T 3dra_A           59 GINELASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMELNNNDFDPYREFDILEAMLS  138 (306)
T ss_dssp             HHHHCTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTTCCCTHHHHHHHHHHHH
T ss_pred             HHHHCcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHH
Confidence            68899999999999999999999  99999999999999999999999988888743322      12345678899999


Q ss_pred             cccCCchhhhhhhhcc
Q 034553           74 RVTKDSSVATKVGYFA   89 (91)
Q Consensus        74 ~~~~~~~~~~~~g~f~   89 (91)
                      ..++.+++=++.||.+
T Consensus       139 ~~pkny~aW~~R~~vl  154 (306)
T 3dra_A          139 SDPKNHHVWSYRKWLV  154 (306)
T ss_dssp             HCTTCHHHHHHHHHHH
T ss_pred             hCCCCHHHHHHHHHHH
Confidence            8888888777776643

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1

Probab=98.51  E-value=2.7e-07  Score=58.62  Aligned_cols=81  Identities=16%  Similarity=0.141  Sum_probs=68.3

Q ss_pred             cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCchhhhhh
Q 034553            6 DCHNVKALYRRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQKSLKQLQAESNKRDAKFYANMFARVTKDSSVATKV   85 (91)
Q Consensus         6 ~p~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~mf~~~~~~~~~~~~~   85 (91)
                      +|.++.+++.+|.++..+|++++|+..|+++++++|++..+...+..+....+...++. ..+.+.....+....+...+
T Consensus        39 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~-~~~~~al~~~~~~~~~~~~l  117 (275)
T 1xnf_A           39 DDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAY-EAFDSVLELDPTYNYAHLNR  117 (275)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHH-HHHHHHHHHCTTCTHHHHHH
T ss_pred             CchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccCHHHHH-HHHHHHHhcCccccHHHHHH
Confidence            46789999999999999999999999999999999999999999999998888887764 46777777666555555555


Q ss_pred             hh
Q 034553           86 GY   87 (91)
Q Consensus        86 g~   87 (91)
                      |.
T Consensus       118 a~  119 (275)
T 1xnf_A          118 GI  119 (275)
T ss_dssp             HH
T ss_pred             HH
Confidence            54

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A

Probab=98.50  E-value=3.6e-07  Score=63.24  Aligned_cols=64  Identities=16%  Similarity=0.104  Sum_probs=58.7

Q ss_pred             cccccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 034553            2 VLDCDCHNVKALYRRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQKSLKQLQAESNKRDA   65 (91)
Q Consensus         2 al~~~p~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~~   65 (91)
                      +++++|+++.+|+.+|.++..+|++++|+..|+++++++|++..+...+..+....++..++..
T Consensus        51 al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~  114 (537)
T 3fp2_A           51 AIELDPNEPVFYSNISACYISTGDLEKVIEFTTKALEIKPDHSKALLRRASANESLGNFTDAMF  114 (537)
T ss_dssp             HHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred             HHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHcCCHHHHHH
Confidence            5788999999999999999999999999999999999999999999999999888887776643

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1

Probab=98.49  E-value=6e-07  Score=56.06  Aligned_cols=61  Identities=18%  Similarity=0.166  Sum_probs=33.9

Q ss_pred             ccccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
Q 034553            3 LDCDCHNVKALYRRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQKSLKQLQAESNKR   63 (91)
Q Consensus         3 l~~~p~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~   63 (91)
                      ++++|.+..+++.+|.++..+|++++|+..|+++++++|++..+...+..+....++..++
T Consensus        84 ~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A  144 (243)
T 2q7f_A           84 LELDSSAATAYYGAGNVYVVKEMYKEAKDMFEKALRAGMENGDLFYMLGTVLVKLEQPKLA  144 (243)
T ss_dssp             HHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHTSCHHHH
T ss_pred             HHcCCcchHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHH
Confidence            3445555555555666666666666666666666665555555555555555444444443

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=98.49  E-value=2.6e-07  Score=60.92  Aligned_cols=62  Identities=5%  Similarity=-0.094  Sum_probs=54.8

Q ss_pred             cccccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCC--HHHHHHHHHHHHHHHHHHHH
Q 034553            2 VLDCDCHNVKALYRRAQVYMEIADLILAELDIKKAIEADPQN--REVKLLQKSLKQLQAESNKR   63 (91)
Q Consensus         2 al~~~p~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~--~~~~~~l~~~~~~~~~~~~~   63 (91)
                      +++++|+++.+++.+|.++...|++++|+..|.++++++|++  ..++..+..+...++...+.
T Consensus       211 al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~a  274 (287)
T 3qou_A          211 QVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTGDAL  274 (287)
T ss_dssp             HHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTTCHH
T ss_pred             HHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCCCcH
Confidence            467899999999999999999999999999999999999998  78888888888887765554

>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A

Probab=98.48  E-value=6.1e-07  Score=53.82  Aligned_cols=52  Identities=13%  Similarity=0.190  Sum_probs=47.7

Q ss_pred             CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH
Q 034553            8 HNVKALYRRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQKSLKQLQAE   59 (91)
Q Consensus         8 ~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~   59 (91)
                      ...+++|.+|.+++++|+|+.|+..++.+|+++|+|..+......++.++..
T Consensus        72 ~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~~eP~n~QA~~Lk~~i~~~i~k  123 (126)
T 1nzn_A           72 EQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAKELERLIDKAMKK  123 (126)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHh
Confidence            5788999999999999999999999999999999999999998888876643

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=98.48  E-value=1.3e-06  Score=57.39  Aligned_cols=80  Identities=9%  Similarity=-0.085  Sum_probs=68.2

Q ss_pred             CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCchhhhhhh
Q 034553            7 CHNVKALYRRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQKSLKQLQAESNKRDAKFYANMFARVTKDSSVATKVG   86 (91)
Q Consensus         7 p~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~mf~~~~~~~~~~~~~g   86 (91)
                      |.++.+++.+|.+++..|+|++|+..|+++++++|++..+...+..+....++..++.. .+.+.....+........+|
T Consensus         1 p~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~-~~~~al~~~p~~~~~~~~lg   79 (281)
T 2c2l_A            1 SPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALA-DCRRALELDGQSVKAHFFLG   79 (281)
T ss_dssp             CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHH-HHHHHTTSCTTCHHHHHHHH
T ss_pred             ChhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHH-HHHHHHHhCCCCHHHHHHHH
Confidence            67899999999999999999999999999999999999999999999999988888754 57777777665555555555


Q ss_pred             h
Q 034553           87 Y   87 (91)
Q Consensus        87 ~   87 (91)
                      .
T Consensus        80 ~   80 (281)
T 2c2l_A           80 Q   80 (281)
T ss_dssp             H
T ss_pred             H
Confidence            3

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3

Probab=98.48  E-value=3.7e-07  Score=64.48  Aligned_cols=56  Identities=20%  Similarity=0.392  Sum_probs=51.2

Q ss_pred             cccccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
Q 034553            2 VLDCDCHNVKALYRRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQKSLKQLQ   57 (91)
Q Consensus         2 al~~~p~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~   57 (91)
                      |++++|+++.+|+++|.++..+|++++|+..|+++++++|++..+...+..+....
T Consensus        66 al~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~  121 (477)
T 1wao_1           66 AIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIV  121 (477)
T ss_dssp             HHHSCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCTTHHHHHHHHHHHH
T ss_pred             HHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence            67899999999999999999999999999999999999999998888888774443

>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7

Probab=98.46  E-value=1e-06  Score=58.15  Aligned_cols=72  Identities=4%  Similarity=-0.052  Sum_probs=58.3

Q ss_pred             ccc-ccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHH-HHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 034553            2 VLD-CDCHNVKALYRRAQVYMEIADLILAELDIKKAIEADPQNRE-VKLLQKSLKQLQAESNKRDAKFYANMFAR   74 (91)
Q Consensus         2 al~-~~p~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~mf~~   74 (91)
                      ||+ ++|++..+|+..|.++..+|++++|+..|+++++++|.+.. +...+..+....+...++ ...+.+....
T Consensus        90 Al~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A-~~~~~~a~~~  163 (308)
T 2ond_A           90 AISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSG-RMIFKKARED  163 (308)
T ss_dssp             HHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHH-HHHHHHHHTS
T ss_pred             HHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHH-HHHHHHHHhc
Confidence            567 79999999999999999999999999999999999999876 788887777766666554 3345555544

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}

Probab=98.45  E-value=9.2e-07  Score=54.37  Aligned_cols=70  Identities=17%  Similarity=0.173  Sum_probs=41.8

Q ss_pred             ccccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH-HHHHHHHHHHHHHhhh
Q 034553            3 LDCDCHNVKALYRRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQKSLKQLQ-AESNKRDAKFYANMFA   73 (91)
Q Consensus         3 l~~~p~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~-~~~~~~~~~~~~~mf~   73 (91)
                      ++++|+++.+++.+|.++..+|++++|+..|+++++++|++..+...+..+.... +...++. ..+.++..
T Consensus        35 ~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~A~-~~~~~~~~  105 (225)
T 2vq2_A           35 LKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEINNNYGWFLCGRLNRPAESM-AYFDKALA  105 (225)
T ss_dssp             HHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCCHHHHH-HHHHHHHT
T ss_pred             HHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCcHHHHH-HHHHHHHc
Confidence            4556666666666666666666666666666666666666666666666555555 5544442 23444444

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}

Probab=98.45  E-value=5.4e-07  Score=55.43  Aligned_cols=82  Identities=17%  Similarity=0.222  Sum_probs=56.2

Q ss_pred             ccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCchhhhh
Q 034553            5 CDCHNVKALYRRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQKSLKQLQAESNKRDAKFYANMFARVTKDSSVATK   84 (91)
Q Consensus         5 ~~p~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~mf~~~~~~~~~~~~   84 (91)
                      .+|+++.+++.+|.++...|++++|+..|+++++++|++..+...+..+....+...++. ..+.++....+....+...
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~-~~~~~a~~~~~~~~~~~~~   81 (225)
T 2vq2_A            3 KANQVSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQ-ESFRQALSIKPDSAEINNN   81 (225)
T ss_dssp             -CCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH-HHHHHHHHHCTTCHHHHHH
T ss_pred             CCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHH-HHHHHHHHhCCCChHHHHH
Confidence            457777888888888888888888888888888888888777777777777666666553 3456655555444444444


Q ss_pred             hhh
Q 034553           85 VGY   87 (91)
Q Consensus        85 ~g~   87 (91)
                      +|.
T Consensus        82 l~~   84 (225)
T 2vq2_A           82 YGW   84 (225)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            443

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A

Probab=98.45  E-value=7.5e-07  Score=56.20  Aligned_cols=71  Identities=18%  Similarity=0.097  Sum_probs=55.2

Q ss_pred             cccccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 034553            2 VLDCDCHNVKALYRRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQKSLKQLQAESNKRDAKFYANMFA   73 (91)
Q Consensus         2 al~~~p~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~mf~   73 (91)
                      +++++|.++.+++.+|.++...|++++|+..|+++++++|++..+...+..+....+...++. ..+.++..
T Consensus        63 al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~-~~~~~~~~  133 (252)
T 2ho1_A           63 ALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASDSRNARVLNNYGGFLYEQKRYEEAY-QRLLEASQ  133 (252)
T ss_dssp             HHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH-HHHHHHTT
T ss_pred             HHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHHhHHHHHH-HHHHHHHh
Confidence            456788888888888888888888888888888888888888888888777777766666653 34555555

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A

Probab=98.45  E-value=6.7e-07  Score=60.69  Aligned_cols=74  Identities=22%  Similarity=0.275  Sum_probs=54.5

Q ss_pred             cccccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccc
Q 034553            2 VLDCDCHNVKALYRRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQKSLKQLQAESNKRDAKFYANMFARVT   76 (91)
Q Consensus         2 al~~~p~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~mf~~~~   76 (91)
                      +++.+|+++.+++.+|.++..+|++++|+..|+++++++|++..+...+..+....+...++. ..+.++....+
T Consensus        52 ~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~-~~~~~~~~~~~  125 (450)
T 2y4t_A           52 AVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRGHLLLKQGKLDEAE-DDFKKVLKSNP  125 (450)
T ss_dssp             HHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH-HHHHHHHTSCC
T ss_pred             HHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHH-HHHHHHHhcCC
Confidence            456678888888888888888888888888888888888888877777777777777666653 34566665543

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}

Probab=98.44  E-value=5.4e-07  Score=58.41  Aligned_cols=79  Identities=10%  Similarity=-0.004  Sum_probs=61.8

Q ss_pred             cccccCCCHHHHHHHHHHHHHhC-CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCch
Q 034553            2 VLDCDCHNVKALYRRAQVYMEIA-DLILAELDIKKAIEADPQNREVKLLQKSLKQLQAESNKRDAKFYANMFARVTKDSS   80 (91)
Q Consensus         2 al~~~p~~~ka~~rrg~a~~~lg-~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~mf~~~~~~~~   80 (91)
                      +++.+|+++.+++.+|.++..+| ++++|+..|+++++++|++..+...+..+....+...++. ..+.+.....+....
T Consensus        82 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~-~~~~~a~~~~~~~~~  160 (330)
T 3hym_B           82 LVDLYPSNPVSWFAVGCYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAM-AAYFTAAQLMKGCHL  160 (330)
T ss_dssp             HHHHCTTSTHHHHHHHHHHHHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHH-HHHHHHHHHTTTCSH
T ss_pred             HHHhCcCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHH-HHHHHHHHhccccHH
Confidence            46678889999999999999999 8999999999999999998888888888888877777663 356666655544333


Q ss_pred             h
Q 034553           81 V   81 (91)
Q Consensus        81 ~   81 (91)
                      .
T Consensus       161 ~  161 (330)
T 3hym_B          161 P  161 (330)
T ss_dssp             H
T ss_pred             H
Confidence            3

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A

Probab=98.44  E-value=5.9e-07  Score=58.16  Aligned_cols=73  Identities=5%  Similarity=-0.082  Sum_probs=46.0

Q ss_pred             cccccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 034553            2 VLDCDCHNVKALYRRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQKSLKQLQAESNKRDAKFYANMFARV   75 (91)
Q Consensus         2 al~~~p~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~mf~~~   75 (91)
                      +++.+|+++.+++.+|.++..+|++++|+..|+++++++|++..+...+..+....++..++.. .+.++....
T Consensus       198 ~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~~A~~-~~~~a~~~~  270 (327)
T 3cv0_A          198 AVELRPDDAQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRVMYNMAVSYSNMSQYDLAAK-QLVRAIYMQ  270 (327)
T ss_dssp             HHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH-HHHHHHHHH
T ss_pred             HHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhccHHHHHH-HHHHHHHhC
Confidence            3455666777777777777777777777777777777777766666666666666655555432 344444443

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A

Probab=98.43  E-value=6.3e-07  Score=61.98  Aligned_cols=84  Identities=20%  Similarity=0.236  Sum_probs=53.1

Q ss_pred             cccccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCchh
Q 034553            2 VLDCDCHNVKALYRRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQKSLKQLQAESNKRDAKFYANMFARVTKDSSV   81 (91)
Q Consensus         2 al~~~p~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~mf~~~~~~~~~   81 (91)
                      +++++|+++.+++.+|.++..+|++++|+..|+++++++|++..+...+..+....++..++. ..+.++....+....+
T Consensus       302 ~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~-~~~~~~~~~~~~~~~~  380 (537)
T 3fp2_A          302 AVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTESE-AFFNETKLKFPTLPEV  380 (537)
T ss_dssp             HHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCSHHHHHHHHHHHHTTCHHHHH-HHHHHHHHHCTTCTHH
T ss_pred             HhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHH-HHHHHHHHhCCCChHH
Confidence            345667777777777777777777777777777777777777666666666666666655553 3455555554444444


Q ss_pred             hhhhh
Q 034553           82 ATKVG   86 (91)
Q Consensus        82 ~~~~g   86 (91)
                      ...+|
T Consensus       381 ~~~l~  385 (537)
T 3fp2_A          381 PTFFA  385 (537)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            44444

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A

Probab=98.43  E-value=1e-06  Score=57.02  Aligned_cols=85  Identities=9%  Similarity=0.053  Sum_probs=69.7

Q ss_pred             cccccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCchh
Q 034553            2 VLDCDCHNVKALYRRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQKSLKQLQAESNKRDAKFYANMFARVTKDSSV   81 (91)
Q Consensus         2 al~~~p~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~mf~~~~~~~~~   81 (91)
                      +++.+|.++.+++.+|.++..+|++++|+..++++++++|++..+...+..+....+...++. ..+.++....+.....
T Consensus       164 ~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~-~~~~~a~~~~~~~~~~  242 (327)
T 3cv0_A          164 ALEMNPNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEAL-DAYNRALDINPGYVRV  242 (327)
T ss_dssp             HHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH-HHHHHHHHHCTTCHHH
T ss_pred             HHhhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHH-HHHHHHHHcCCCCHHH
Confidence            467789999999999999999999999999999999999999999999999888888777764 3567776665554444


Q ss_pred             hhhhhh
Q 034553           82 ATKVGY   87 (91)
Q Consensus        82 ~~~~g~   87 (91)
                      ...+|.
T Consensus       243 ~~~l~~  248 (327)
T 3cv0_A          243 MYNMAV  248 (327)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            444443

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*

Probab=98.42  E-value=3e-06  Score=52.29  Aligned_cols=68  Identities=9%  Similarity=0.068  Sum_probs=60.1

Q ss_pred             CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccC
Q 034553            9 NVKALYRRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQKSLKQLQAESNKRDAKFYANMFARVTK   77 (91)
Q Consensus         9 ~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~mf~~~~~   77 (91)
                      ++.+++.+|.++..+|++++|+..|+++++++|++..+...+..+....++..++.. .+.+.....++
T Consensus        36 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~-~~~~al~~~~~  103 (213)
T 1hh8_A           36 HSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKYDLAIK-DLKEALIQLRG  103 (213)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH-HHHHHHHTTTT
T ss_pred             ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcccHHHHHH-HHHHHHHhCCC
Confidence            789999999999999999999999999999999999999999999999888887743 57777765544

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A

Probab=98.42  E-value=8.7e-07  Score=60.13  Aligned_cols=85  Identities=11%  Similarity=0.033  Sum_probs=67.4

Q ss_pred             cccccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCchh
Q 034553            2 VLDCDCHNVKALYRRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQKSLKQLQAESNKRDAKFYANMFARVTKDSSV   81 (91)
Q Consensus         2 al~~~p~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~mf~~~~~~~~~   81 (91)
                      ++..+|.++.+++.+|.+++..|++++|+..|+++++++|++..+...+..+....+...++. ..+.++....+.....
T Consensus        18 ~~~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~-~~~~~al~~~p~~~~~   96 (450)
T 2y4t_A           18 LYFQSMADVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAAL-PDLTKVIQLKMDFTAA   96 (450)
T ss_dssp             -----CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH-HHHHHHHHHCTTCHHH
T ss_pred             cccccHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHH-HHHHHHHhcCCCcHHH
Confidence            567899999999999999999999999999999999999999999999999988888887764 4577777765555445


Q ss_pred             hhhhhh
Q 034553           82 ATKVGY   87 (91)
Q Consensus        82 ~~~~g~   87 (91)
                      ...+|.
T Consensus        97 ~~~l~~  102 (450)
T 2y4t_A           97 RLQRGH  102 (450)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            554443

>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}

Probab=98.40  E-value=2.2e-06  Score=54.89  Aligned_cols=74  Identities=8%  Similarity=-0.037  Sum_probs=63.1

Q ss_pred             ccccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCC---HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccC
Q 034553            3 LDCDCHNVKALYRRAQVYMEIADLILAELDIKKAIEADPQN---REVKLLQKSLKQLQAESNKRDAKFYANMFARVTK   77 (91)
Q Consensus         3 l~~~p~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~---~~~~~~l~~~~~~~~~~~~~~~~~~~~mf~~~~~   77 (91)
                      .+++|.++.++|.+|.+++..|+|++|+..|+++++.+|++   ..+...+..+....++..++. ..+.++....+.
T Consensus         8 ~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~-~~~~~~l~~~p~   84 (261)
T 3qky_A            8 GRLRHSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAA-SEYERFIQIYQI   84 (261)
T ss_dssp             ---CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHH-HHHHHHHHHCTT
T ss_pred             CCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHH-HHHHHHHHHCCC
Confidence            45789999999999999999999999999999999999999   789999999999988888874 457777776543

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A

Probab=98.37  E-value=1.6e-06  Score=48.90  Aligned_cols=72  Identities=21%  Similarity=0.229  Sum_probs=59.6

Q ss_pred             cccccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 034553            2 VLDCDCHNVKALYRRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQKSLKQLQAESNKRDAKFYANMFAR   74 (91)
Q Consensus         2 al~~~p~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~mf~~   74 (91)
                      +++.+|.++.+++..|.++...|++++|+..+++++.+.|++..+...+..+....++..++. ..+..+...
T Consensus        61 ~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~-~~~~~~~~~  132 (136)
T 2fo7_A           61 ALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAI-EYYQKALEL  132 (136)
T ss_dssp             HHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHH-HHHHHHHHH
T ss_pred             HHHHCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHH-HHHHHHHcc
Confidence            456789999999999999999999999999999999999999988888888877776666653 345555443

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}

Probab=98.37  E-value=1.9e-06  Score=59.05  Aligned_cols=73  Identities=15%  Similarity=0.040  Sum_probs=62.7

Q ss_pred             cccccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccc
Q 034553            2 VLDCDCHNVKALYRRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQKSLKQLQAESNKRDAKFYANMFARVT   76 (91)
Q Consensus         2 al~~~p~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~mf~~~~   76 (91)
                      +++.+| ++.+|+.+|.++..+|++++|+..|+++++++|++..+...+..+....++..++. ..+.++....+
T Consensus        32 al~~~p-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~-~~~~~~~~~~~  104 (514)
T 2gw1_A           32 ALELKE-DPVFYSNLSACYVSVGDLKKVVEMSTKALELKPDYSKVLLRRASANEGLGKFADAM-FDLSVLSLNGD  104 (514)
T ss_dssp             HHHHCC-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHH-HHHHHHHHSSS
T ss_pred             HHhcCc-cHHHHHhHHHHHHHHhhHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHhhHHHHH-HHHHHHHhcCC
Confidence            567788 69999999999999999999999999999999999999999999999888888774 35667665543

>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*

Probab=98.36  E-value=1.2e-06  Score=60.36  Aligned_cols=87  Identities=6%  Similarity=-0.020  Sum_probs=73.7

Q ss_pred             cccccCCCHHHHHHHHHHHHHhC-CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH-HHHHHHHHHHHHHhhhcccCCc
Q 034553            2 VLDCDCHNVKALYRRAQVYMEIA-DLILAELDIKKAIEADPQNREVKLLQKSLKQLQ-AESNKRDAKFYANMFARVTKDS   79 (91)
Q Consensus         2 al~~~p~~~ka~~rrg~a~~~lg-~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~-~~~~~~~~~~~~~mf~~~~~~~   79 (91)
                      +|.++|++..+|+.|+.++..++ .+++++..+..++..+|++..++.-.+.+-..+ ...-..+...+.+++...+..+
T Consensus        80 ~L~~nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~L~~dpkNy  159 (349)
T 3q7a_A           80 IVRMNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHHRLLLLDRISPQDPVSEIEYIHGSLLPDPKNY  159 (349)
T ss_dssp             HHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHCCSCCHHHHHHHHHHTSSCTTCH
T ss_pred             HHHhCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCH
Confidence            68899999999999999999999 599999999999999999999999998888877 4122345678899998888777


Q ss_pred             hhhhhhhhc
Q 034553           80 SVATKVGYF   88 (91)
Q Consensus        80 ~~~~~~g~f   88 (91)
                      +.=+..+|.
T Consensus       160 ~AW~~R~wv  168 (349)
T 3q7a_A          160 HTWAYLHWL  168 (349)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            776666654

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=98.35  E-value=1.8e-06  Score=62.44  Aligned_cols=54  Identities=17%  Similarity=-0.009  Sum_probs=27.9

Q ss_pred             ccccCCCHHHHHHHHHHHHHhC-CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Q 034553            3 LDCDCHNVKALYRRAQVYMEIA-DLILAELDIKKAIEADPQNREVKLLQKSLKQL   56 (91)
Q Consensus         3 l~~~p~~~ka~~rrg~a~~~lg-~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~   56 (91)
                      |++||.|..||..|+.+...+| .++++++.+.++++++|+|..++..+..+-..
T Consensus       136 l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~  190 (567)
T 1dce_A          136 LEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQ  190 (567)
T ss_dssp             HHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHH
T ss_pred             HhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHh
Confidence            4445555555555555555555 45555555555555555555555555444444

>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A

Probab=98.34  E-value=3.8e-06  Score=50.76  Aligned_cols=54  Identities=13%  Similarity=0.186  Sum_probs=48.9

Q ss_pred             cC-CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH
Q 034553            6 DC-HNVKALYRRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQKSLKQLQAE   59 (91)
Q Consensus         6 ~p-~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~   59 (91)
                      +| ...+.+|.+|.+++++|+|+.|+..++.+|+++|+|..+......++.++..
T Consensus        73 ~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~QA~~Lk~~Ie~ki~k  127 (134)
T 3o48_A           73 AESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGALKSMVEDKIQK  127 (134)
T ss_dssp             CGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHHHH
T ss_pred             CcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHh
Confidence            45 4578899999999999999999999999999999999999998888887764

>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A

Probab=98.32  E-value=5.6e-06  Score=47.07  Aligned_cols=52  Identities=25%  Similarity=0.179  Sum_probs=45.4

Q ss_pred             CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
Q 034553            7 CHNVKALYRRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQKSLKQLQA   58 (91)
Q Consensus         7 p~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~   58 (91)
                      +..+..+...|.+++.+|+++.|+..++++++++|++..+...+.-++..+.
T Consensus        43 ~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~n~~~~~~~~~   94 (104)
T 2v5f_A           43 IDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANGNLKYFEYIMA   94 (104)
T ss_dssp             SCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHhhHHHHHHHHH
Confidence            4567889999999999999999999999999999999998888776665443

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}

Probab=98.32  E-value=1.6e-06  Score=60.86  Aligned_cols=58  Identities=12%  Similarity=0.048  Sum_probs=26.0

Q ss_pred             ccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH
Q 034553            5 CDCHNVKALYRRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQKSLKQLQAESNK   62 (91)
Q Consensus         5 ~~p~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~   62 (91)
                      .+|+++.+++.+|.++...|++++|+..|+++++++|++..+...+..+....+...+
T Consensus       368 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~  425 (597)
T 2xpi_A          368 RHPEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQ  425 (597)
T ss_dssp             HCTTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHH
T ss_pred             hCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHH
Confidence            3444444444444444444444444444444444444444444444444444333333

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}

Probab=98.31  E-value=8e-06  Score=44.88  Aligned_cols=67  Identities=9%  Similarity=0.117  Sum_probs=56.6

Q ss_pred             HHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHH-HHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCch
Q 034553           13 LYRRAQVYMEIADLILAELDIKKAIEADPQNRE-VKLLQKSLKQLQAESNKRDAKFYANMFARVTKDSS   80 (91)
Q Consensus        13 ~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~mf~~~~~~~~   80 (91)
                      .+.+|.+++..|++++|+..|+++++++|++.. +...+..+....++..++. ..+.+.....+....
T Consensus         3 ~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~-~~~~~al~~~p~~~~   70 (99)
T 2kc7_A            3 QLKTIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKAL-NNYQSAIELNPDSPA   70 (99)
T ss_dssp             THHHHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHH-HHHHHHHHHCTTSTH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHH-HHHHHHHhcCCCcHH
Confidence            477899999999999999999999999999999 9999999999888887764 456777766554433

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=98.31  E-value=1.5e-06  Score=62.86  Aligned_cols=86  Identities=9%  Similarity=0.045  Sum_probs=56.2

Q ss_pred             cccccCCCHHHHHHHHHHHHHhCC----------HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH-HHHHHHHHHH
Q 034553            2 VLDCDCHNVKALYRRAQVYMEIAD----------LILAELDIKKAIEADPQNREVKLLQKSLKQLQAES-NKRDAKFYAN   70 (91)
Q Consensus         2 al~~~p~~~ka~~rrg~a~~~lg~----------~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~-~~~~~~~~~~   70 (91)
                      +|.++|++..+|+.|+.++..+|+          +++|+..++++++.+|++..++.-..-+-..+... -+.+-..+.+
T Consensus        55 ~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~y~aW~hR~w~l~~l~~~~~~~el~~~~k  134 (567)
T 1dce_A           55 ILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCAR  134 (567)
T ss_dssp             HHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCSSCCHHHHHHHHHH
T ss_pred             HHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccccHHHHHHHHHH
Confidence            466777777777777777777777          77777777777777777777777666666655521 1223456666


Q ss_pred             hhhcccCCchhhhhhhh
Q 034553           71 MFARVTKDSSVATKVGY   87 (91)
Q Consensus        71 mf~~~~~~~~~~~~~g~   87 (91)
                      +++..+..++.-+..||
T Consensus       135 ~l~~d~~N~~aW~~R~~  151 (567)
T 1dce_A          135 FLEADERNFHCWDYRRF  151 (567)
T ss_dssp             HHHHCTTCHHHHHHHHH
T ss_pred             HHhhccccccHHHHHHH
Confidence            66666665555555544

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=98.31  E-value=6.2e-07  Score=59.06  Aligned_cols=34  Identities=12%  Similarity=-0.047  Sum_probs=18.4

Q ss_pred             cccccCCCHHHHHHHHHHHHHhCCHHHHHHHHHH
Q 034553            2 VLDCDCHNVKALYRRAQVYMEIADLILAELDIKK   35 (91)
Q Consensus         2 al~~~p~~~ka~~rrg~a~~~lg~~~~A~~~~~~   35 (91)
                      +++++|+++.+++.+|.++..+|++++|+..|++
T Consensus       143 al~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~  176 (287)
T 3qou_A          143 AWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXT  176 (287)
T ss_dssp             HHHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTT
T ss_pred             HHHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHh
Confidence            3455555666666666655555555555444333

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A

Probab=98.29  E-value=3.9e-06  Score=52.83  Aligned_cols=69  Identities=12%  Similarity=0.067  Sum_probs=41.6

Q ss_pred             ccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 034553            5 CDCHNVKALYRRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQKSLKQLQAESNKRDAKFYANMFAR   74 (91)
Q Consensus         5 ~~p~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~mf~~   74 (91)
                      .+|.++.+++.+|.++..+|++++|+..|+++++++|.+..+...+..+....++..++. ..+.++...
T Consensus       136 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~-~~~~~~~~~  204 (252)
T 2ho1_A          136 LYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPAR-QYYDLFAQG  204 (252)
T ss_dssp             TCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHH-HHHHHHHTT
T ss_pred             cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHH-HHHHHHHHh
Confidence            456666666666666666666666666666666666666666666666655555554442 234444443

>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=98.25  E-value=5.4e-06  Score=50.66  Aligned_cols=53  Identities=13%  Similarity=0.182  Sum_probs=47.1

Q ss_pred             cC-CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
Q 034553            6 DC-HNVKALYRRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQKSLKQLQA   58 (91)
Q Consensus         6 ~p-~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~   58 (91)
                      +| ...+.+|.+|.+++++|+|+.|...++.+|+++|+|..+......++.++.
T Consensus        72 ~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~QA~~Lk~~Ie~~i~  125 (144)
T 1y8m_A           72 AESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGALKSMVEDKIQ  125 (144)
T ss_dssp             CCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHH
T ss_pred             CccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHH
Confidence            44 467889999999999999999999999999999999999988888876653

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}

Probab=98.25  E-value=8.6e-07  Score=56.41  Aligned_cols=67  Identities=10%  Similarity=0.004  Sum_probs=38.0

Q ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccC
Q 034553           10 VKALYRRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQKSLKQLQAESNKRDAKFYANMFARVTK   77 (91)
Q Consensus        10 ~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~mf~~~~~   77 (91)
                      ..+|+.+|.++..+|++++|+..|+++++++|++..+...+..+....++..++. ..+.+.....+.
T Consensus        74 ~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~-~~~~~al~~~~~  140 (272)
T 3u4t_A           74 SADFEYYGKILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAI-QYMEKQIRPTTT  140 (272)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHH-HHHGGGCCSSCC
T ss_pred             HHHHHHHHHHHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHccCHHHHH-HHHHHHhhcCCC
Confidence            4446666666666666666666666666666666666666666665555555442 234444444333

>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A

Probab=98.25  E-value=5.3e-06  Score=52.43  Aligned_cols=54  Identities=19%  Similarity=0.172  Sum_probs=43.2

Q ss_pred             cccccCCC---HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHH---HHHHHHHHHH
Q 034553            2 VLDCDCHN---VKALYRRAQVYMEIADLILAELDIKKAIEADPQNRE---VKLLQKSLKQ   55 (91)
Q Consensus         2 al~~~p~~---~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~---~~~~l~~~~~   55 (91)
                      +++.+|++   ..+++.+|.+++.+|++++|+..|+++++++|++..   +.-.+..+..
T Consensus        30 ~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~~g~~~~   89 (225)
T 2yhc_A           30 LDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNM   89 (225)
T ss_dssp             HHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHH
T ss_pred             HHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHHHHHHHH
Confidence            35566765   489999999999999999999999999999999864   4444555443

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}

Probab=98.24  E-value=6.5e-06  Score=57.78  Aligned_cols=87  Identities=11%  Similarity=-0.039  Sum_probs=71.8

Q ss_pred             cccccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCchh
Q 034553            2 VLDCDCHNVKALYRRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQKSLKQLQAESNKRDAKFYANMFARVTKDSSV   81 (91)
Q Consensus         2 al~~~p~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~mf~~~~~~~~~   81 (91)
                      +++++|.++.+|+.+|.++...|++++|+..|++++++.|++..+...+..+....+...++. ..+.+|....+....+
T Consensus       399 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~-~~~~~~~~~~~~~~~~  477 (597)
T 2xpi_A          399 SSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQLGNILLAN-EYLQSSYALFQYDPLL  477 (597)
T ss_dssp             HHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTTCSHHHHHHHHHHHHHTCHHHHH-HHHHHHHHHCCCCHHH
T ss_pred             HHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCCHHHHH-HHHHHHHHhCCCChHH
Confidence            456789999999999999999999999999999999999999999888888888888877764 4678888776665566


Q ss_pred             hhhhhhcc
Q 034553           82 ATKVGYFA   89 (91)
Q Consensus        82 ~~~~g~f~   89 (91)
                      .+.+|...
T Consensus       478 ~~~l~~~~  485 (597)
T 2xpi_A          478 LNELGVVA  485 (597)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            66666543

>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*

Probab=98.21  E-value=1.4e-05  Score=54.72  Aligned_cols=56  Identities=16%  Similarity=-0.033  Sum_probs=39.3

Q ss_pred             cccccCCCHHHHHHHHHHHHHhCC-HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
Q 034553            2 VLDCDCHNVKALYRRAQVYMEIAD-LILAELDIKKAIEADPQNREVKLLQKSLKQLQ   57 (91)
Q Consensus         2 al~~~p~~~ka~~rrg~a~~~lg~-~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~   57 (91)
                      +|++||.|..||..|+.+...+|. ++++++.+.++++.+|+|..++..+..+-..+
T Consensus       136 ~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~N~SAW~~R~~ll~~l  192 (331)
T 3dss_A          136 FLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQL  192 (331)
T ss_dssp             HHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHH
T ss_pred             HHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHh
Confidence            456677777777777777777776 57777777777777777777776666665555

>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*

Probab=98.19  E-value=6.6e-06  Score=56.29  Aligned_cols=86  Identities=12%  Similarity=0.038  Sum_probs=69.3

Q ss_pred             cccccCCCHHHHHHHHHHHHHhC--CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCc
Q 034553            2 VLDCDCHNVKALYRRAQVYMEIA--DLILAELDIKKAIEADPQNREVKLLQKSLKQLQAESNKRDAKFYANMFARVTKDS   79 (91)
Q Consensus         2 al~~~p~~~ka~~rrg~a~~~lg--~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~mf~~~~~~~   79 (91)
                      +|..+|.+..+|+.|+.++..++  .+++++..+.++++++|.|..++....-+-...+..-+.+-+.+.++....+...
T Consensus       100 ~L~~~PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~N~  179 (331)
T 3dss_A          100 CLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNY  179 (331)
T ss_dssp             HHHHCTTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSCCH
T ss_pred             HHHhCCCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCCCH
Confidence            57789999999999999999999  4999999999999999999999988888877766533345667777777766666


Q ss_pred             hhhhhhhh
Q 034553           80 SVATKVGY   87 (91)
Q Consensus        80 ~~~~~~g~   87 (91)
                      +.-+..|+
T Consensus       180 SAW~~R~~  187 (331)
T 3dss_A          180 SSWHYRSC  187 (331)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            55554443

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}

Probab=98.16  E-value=1.2e-05  Score=51.10  Aligned_cols=82  Identities=16%  Similarity=0.101  Sum_probs=41.1

Q ss_pred             cccccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCH----HHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccC
Q 034553            2 VLDCDCHNVKALYRRAQVYMEIADLILAELDIKKAIEADPQNR----EVKLLQKSLKQLQAESNKRDAKFYANMFARVTK   77 (91)
Q Consensus         2 al~~~p~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~----~~~~~l~~~~~~~~~~~~~~~~~~~~mf~~~~~   77 (91)
                      +++++|+++.+++.+|.++..+|++++|+..|+++++ .|.+.    .+...+..+....++..++. ..+.+.....+.
T Consensus        29 ~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~-~~~~~~~~~~~~~~lg~~~~~~~~~~~A~-~~~~~a~~~~~~  106 (272)
T 3u4t_A           29 LEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFS-KVNATKAKSADFEYYGKILMKKGQDSLAI-QQYQAAVDRDTT  106 (272)
T ss_dssp             HHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHT-TSCTTTCCHHHHHHHHHHHHHTTCHHHHH-HHHHHHHHHSTT
T ss_pred             HHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHh-ccCchhHHHHHHHHHHHHHHHcccHHHHH-HHHHHHHhcCcc
Confidence            3455566666666666666666666666666666665 33322    22445555555555544442 234444444443


Q ss_pred             Cchhhhhh
Q 034553           78 DSSVATKV   85 (91)
Q Consensus        78 ~~~~~~~~   85 (91)
                      ...+...+
T Consensus       107 ~~~~~~~l  114 (272)
T 3u4t_A          107 RLDMYGQI  114 (272)
T ss_dssp             CTHHHHHH
T ss_pred             cHHHHHHH
Confidence            33333333

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}

Probab=98.16  E-value=2.4e-05  Score=53.48  Aligned_cols=54  Identities=20%  Similarity=0.062  Sum_probs=49.2

Q ss_pred             cccccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
Q 034553            2 VLDCDCHNVKALYRRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQKSLKQ   55 (91)
Q Consensus         2 al~~~p~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~   55 (91)
                      ++.++|.++.+++.+|.++..+|++++|+..|+++++++|++..+...+..+..
T Consensus       239 al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~y~  292 (472)
T 4g1t_A          239 ALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPNNAYLHCQIGCCYR  292 (472)
T ss_dssp             HHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred             HHHhCccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCChHHHHHHHHHHHH
Confidence            567899999999999999999999999999999999999999998888776644

>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}

Probab=98.12  E-value=6.6e-06  Score=55.60  Aligned_cols=85  Identities=12%  Similarity=0.018  Sum_probs=60.4

Q ss_pred             cccccCCCHHHHHHHHHHHHHhCCHH--HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH-----HHHHHHHHHHHhhhc
Q 034553            2 VLDCDCHNVKALYRRAQVYMEIADLI--LAELDIKKAIEADPQNREVKLLQKSLKQLQAE-----SNKRDAKFYANMFAR   74 (91)
Q Consensus         2 al~~~p~~~ka~~rrg~a~~~lg~~~--~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~-----~~~~~~~~~~~mf~~   74 (91)
                      +|+.+|.|..+|+.|+.++..+|.++  ++++.+.++++++|.|..++.....+-..+..     .-+.+-+.+.++...
T Consensus       136 ~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~N~sAW~~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~  215 (306)
T 3dra_A          136 MLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLKNNSAWSHRFFLLFSKKHLATDNTIDEELNYVKDKIVK  215 (306)
T ss_dssp             HHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHSSGGGCCHHHHHHHHHHHHHHHHH
T ss_pred             HHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccccchhhhHHHHHHHHHHHHHh
Confidence            56788999999999999998898888  89999999999999988888877766655543     122334455665555


Q ss_pred             ccCCchhhhhhh
Q 034553           75 VTKDSSVATKVG   86 (91)
Q Consensus        75 ~~~~~~~~~~~g   86 (91)
                      .+...+.=+..+
T Consensus       216 ~p~n~SaW~y~~  227 (306)
T 3dra_A          216 CPQNPSTWNYLL  227 (306)
T ss_dssp             CSSCHHHHHHHH
T ss_pred             CCCCccHHHHHH
Confidence            555444444333

>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*

Probab=98.12  E-value=1e-05  Score=55.81  Aligned_cols=87  Identities=13%  Similarity=0.046  Sum_probs=72.5

Q ss_pred             cccccCCCHHHHHHHHHHHHHh-C-CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH-------HHHHHHHHHhh
Q 034553            2 VLDCDCHNVKALYRRAQVYMEI-A-DLILAELDIKKAIEADPQNREVKLLQKSLKQLQAESN-------KRDAKFYANMF   72 (91)
Q Consensus         2 al~~~p~~~ka~~rrg~a~~~l-g-~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~-------~~~~~~~~~mf   72 (91)
                      +|..+|.+..+|+.|+.++..+ + ++++++..+.++++++|.|..++.-.+-+-..++...       ..+-+.+.++.
T Consensus       115 ~L~~nPKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I  194 (349)
T 3q7a_A          115 FAVQNLKSYQVWHHRLLLLDRISPQDPVSEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEML  194 (349)
T ss_dssp             HHHTTCCCHHHHHHHHHHHHHHCCSCCHHHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHH
T ss_pred             HHHhCCCcHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHH
Confidence            5788999999999999999999 8 9999999999999999999999998888888777665       35567788888


Q ss_pred             hcccCCchhhhhhhhc
Q 034553           73 ARVTKDSSVATKVGYF   88 (91)
Q Consensus        73 ~~~~~~~~~~~~~g~f   88 (91)
                      .......+.=+..|+.
T Consensus       195 ~~dp~N~SAW~~R~~l  210 (349)
T 3q7a_A          195 RVDGRNNSAWGWRWYL  210 (349)
T ss_dssp             HHCTTCHHHHHHHHHH
T ss_pred             HhCCCCHHHHHHHHHH
Confidence            8776666665555543

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}

Probab=98.10  E-value=2.7e-06  Score=58.31  Aligned_cols=59  Identities=15%  Similarity=0.048  Sum_probs=27.1

Q ss_pred             cccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH
Q 034553            4 DCDCHNVKALYRRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQKSLKQLQAESNK   62 (91)
Q Consensus         4 ~~~p~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~   62 (91)
                      +++|.++.+++.+|.++..+|++++|+..|+++++++|++..+...+..+....+...+
T Consensus       332 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~  390 (514)
T 2gw1_A          332 ELDPENIFPYIQLACLAYRENKFDDCETLFSEAKRKFPEAPEVPNFFAEILTDKNDFDK  390 (514)
T ss_dssp             HTCSSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHTTCHHH
T ss_pred             HhChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHCCCHHH
Confidence            34444444444444444444444444444444444444444444444444444444333

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}

Probab=98.06  E-value=5.6e-05  Score=49.90  Aligned_cols=80  Identities=14%  Similarity=0.151  Sum_probs=45.8

Q ss_pred             CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHH--HHHHHHHHHHHHHHHHHHHhhhcccCCchhhhh
Q 034553            7 CHNVKALYRRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQK--SLKQLQAESNKRDAKFYANMFARVTKDSSVATK   84 (91)
Q Consensus         7 p~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~~~~~l~--~~~~~~~~~~~~~~~~~~~mf~~~~~~~~~~~~   84 (91)
                      |+++.+++.+|.++..+|++++|+..|+++++++|++........  .+....+...++. ..+.++....+......++
T Consensus       127 ~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~l~~a~~~l~~~~~~~~eA~-~~~~~~l~~~p~~~~~~~~  205 (291)
T 3mkr_A          127 GDSLECMAMTVQILLKLDRLDLARKELKKMQDQDEDATLTQLATAWVSLAAGGEKLQDAY-YIFQEMADKCSPTLLLLNG  205 (291)
T ss_dssp             CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTTHHHHHH-HHHHHHHHHSCCCHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhCchHHHHHH-HHHHHHHHhCCCcHHHHHH
Confidence            677778888888888888888888888888888887653222111  1111112333332 3455555555544444444


Q ss_pred             hhh
Q 034553           85 VGY   87 (91)
Q Consensus        85 ~g~   87 (91)
                      .|.
T Consensus       206 la~  208 (291)
T 3mkr_A          206 QAA  208 (291)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            443

>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A

Probab=98.05  E-value=1.9e-05  Score=49.87  Aligned_cols=72  Identities=11%  Similarity=0.102  Sum_probs=57.6

Q ss_pred             cccccCCCHHHH-----------------HHHHHHHHHhCCHHHHHHHHHHHHHHCCCCH---HHHHHHHHHHHHHHHHH
Q 034553            2 VLDCDCHNVKAL-----------------YRRAQVYMEIADLILAELDIKKAIEADPQNR---EVKLLQKSLKQLQAESN   61 (91)
Q Consensus         2 al~~~p~~~ka~-----------------~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~---~~~~~l~~~~~~~~~~~   61 (91)
                      +|+.+|+++.++                 +.+|.+++..|++++|+..|+++++..|+++   ++...+..+...++...
T Consensus       122 ~l~~~P~~~~a~~a~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~  201 (225)
T 2yhc_A          122 LVRGYPNSQYTTDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNA  201 (225)
T ss_dssp             HHTTCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcH
Confidence            467788887655                 6789999999999999999999999999986   56777888888888777


Q ss_pred             HHHHHHHHHhhhc
Q 034553           62 KRDAKFYANMFAR   74 (91)
Q Consensus        62 ~~~~~~~~~mf~~   74 (91)
                      ++. ..++.+...
T Consensus       202 ~A~-~~~~~l~~~  213 (225)
T 2yhc_A          202 QAE-KVAKIIAAN  213 (225)
T ss_dssp             HHH-HHHHHHHHC
T ss_pred             HHH-HHHHHHHhh
Confidence            764 345655544

>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7

Probab=98.02  E-value=7.6e-06  Score=57.57  Aligned_cols=72  Identities=4%  Similarity=-0.065  Sum_probs=44.7

Q ss_pred             ccc-ccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 034553            2 VLD-CDCHNVKALYRRAQVYMEIADLILAELDIKKAIEADPQNR-EVKLLQKSLKQLQAESNKRDAKFYANMFAR   74 (91)
Q Consensus         2 al~-~~p~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~mf~~   74 (91)
                      |++ ++|++...|+..|..+...|++++|...|+++++++|.+. .+...+..+....+...++ ...+.+....
T Consensus       312 Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A-~~~~~~Al~~  385 (530)
T 2ooe_A          312 AISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSG-RMIFKKARED  385 (530)
T ss_dssp             HTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHTC
T ss_pred             HHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCccccCchHHHHHHHHHHHHhcCHHHH-HHHHHHHHhc
Confidence            444 5677777777777777777777777777777777777664 4566655555555544443 2344444443

>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A

Probab=97.97  E-value=7.4e-05  Score=42.29  Aligned_cols=79  Identities=14%  Similarity=0.095  Sum_probs=63.0

Q ss_pred             CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHC-------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCchh
Q 034553            9 NVKALYRRAQVYMEIADLILAELDIKKAIEAD-------PQNREVKLLQKSLKQLQAESNKRDAKFYANMFARVTKDSSV   81 (91)
Q Consensus         9 ~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~-------p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~mf~~~~~~~~~   81 (91)
                      ++.-.|..|..++..++|+.|+..|+.|++..       +....+...+..+...++....+. ..+.+.....+....+
T Consensus         4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~-~~~~~al~l~P~~~~~   82 (104)
T 2v5f_A            4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKAL-LLTKKLLELDPEHQRA   82 (104)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHH-HHHHHHHHHCTTCHHH
T ss_pred             CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHH-HHHHHHHhcCCCCHHH
Confidence            46678999999999999999999999999973       234678888888888888777663 4677777776766667


Q ss_pred             hhhhhhc
Q 034553           82 ATKVGYF   88 (91)
Q Consensus        82 ~~~~g~f   88 (91)
                      .+++++|
T Consensus        83 ~~n~~~~   89 (104)
T 2v5f_A           83 NGNLKYF   89 (104)
T ss_dssp             HHHHHHH
T ss_pred             HhhHHHH
Confidence            7777654

>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7

Probab=97.94  E-value=0.00012  Score=51.51  Aligned_cols=87  Identities=8%  Similarity=-0.002  Sum_probs=63.4

Q ss_pred             cccccCCCH-HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH-HHHHHHHHHHHHHHHhhhcccCCc
Q 034553            2 VLDCDCHNV-KALYRRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQKSLKQ-LQAESNKRDAKFYANMFARVTKDS   79 (91)
Q Consensus         2 al~~~p~~~-ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~mf~~~~~~~   79 (91)
                      +|+++|.++ .+|...|..+...|++++|+..|++|++..|.+..+......+.- ..+...++ ...|.+.....+...
T Consensus       347 al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~a~~~~~~~~~~~~A-~~~~e~al~~~p~~~  425 (530)
T 2ooe_A          347 LLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVA-FKIFELGLKKYGDIP  425 (530)
T ss_dssp             HHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTCCTHHHHHHHHHHHHHTCCHHHH-HHHHHHHHHHHTTCH
T ss_pred             HhCccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHcCChhHH-HHHHHHHHHHCCCCH
Confidence            577889885 799999999999999999999999999998887655443333321 12333333 446777777777777


Q ss_pred             hhhhhhhhcc
Q 034553           80 SVATKVGYFA   89 (91)
Q Consensus        80 ~~~~~~g~f~   89 (91)
                      .+...|+.|.
T Consensus       426 ~~~~~~~~~~  435 (530)
T 2ooe_A          426 EYVLAYIDYL  435 (530)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            7777777664

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}

Probab=97.89  E-value=3.4e-05  Score=52.73  Aligned_cols=51  Identities=20%  Similarity=0.096  Sum_probs=31.9

Q ss_pred             cccccCCCHHHHHHHHHHHH---HhCCHHHHHHHHHHHHHHCCCCHHHHHHHHH
Q 034553            2 VLDCDCHNVKALYRRAQVYM---EIADLILAELDIKKAIEADPQNREVKLLQKS   52 (91)
Q Consensus         2 al~~~p~~~ka~~rrg~a~~---~lg~~~~A~~~~~~al~l~p~~~~~~~~l~~   52 (91)
                      ||+++|+++.+++..|.+++   ..+++++|+..|+++++++|++..+...+..
T Consensus       164 al~~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~~~~~~~~l~~  217 (472)
T 4g1t_A          164 ALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDNQYLKVLLAL  217 (472)
T ss_dssp             HHHHSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSSCHHHHHHHHH
T ss_pred             HHHhCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCcchHHHHHHHH
Confidence            45666777766666666643   3466666666666666666666665555443

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=97.73  E-value=3.9e-05  Score=50.31  Aligned_cols=72  Identities=13%  Similarity=-0.033  Sum_probs=51.8

Q ss_pred             cccccCCC------HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHH-------HHHHHHHHHHHHHHHHHHHHHHH
Q 034553            2 VLDCDCHN------VKALYRRAQVYMEIADLILAELDIKKAIEADPQNRE-------VKLLQKSLKQLQAESNKRDAKFY   68 (91)
Q Consensus         2 al~~~p~~------~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~-------~~~~l~~~~~~~~~~~~~~~~~~   68 (91)
                      ||++.|..      ..++..+|.++..+|+|++|+..|++++++.|++..       +...+..+....++..++.. .+
T Consensus       144 Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~-~~  222 (292)
T 1qqe_A          144 AGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAAR-TL  222 (292)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHH-HH
T ss_pred             HHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHH-HH
Confidence            45555543      578999999999999999999999999999998653       34555666666666655532 45


Q ss_pred             HHhhhc
Q 034553           69 ANMFAR   74 (91)
Q Consensus        69 ~~mf~~   74 (91)
                      .+....
T Consensus       223 ~~al~l  228 (292)
T 1qqe_A          223 QEGQSE  228 (292)
T ss_dssp             HGGGCC
T ss_pred             HHHHhh
Confidence            554443

>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1

Probab=97.68  E-value=0.00026  Score=45.22  Aligned_cols=49  Identities=14%  Similarity=-0.019  Sum_probs=36.3

Q ss_pred             cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Q 034553            6 DCHNVKALYRRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQKSLKQL   56 (91)
Q Consensus         6 ~p~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~   56 (91)
                      +|+++.+++..|.++...|++++|+..|+++++  |++..+...+..+...
T Consensus         2 ~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~--~~~~~a~~~lg~~~~~   50 (273)
T 1ouv_A            2 AEQDPKELVGLGAKSYKEKDFTQAKKYFEKACD--LKENSGCFNLGVLYYQ   50 (273)
T ss_dssp             ---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--TTCHHHHHHHHHHHHH
T ss_pred             CCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHH--CCCHHHHHHHHHHHHc
Confidence            577888888888888888888888888888887  6677777777766665

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A

Probab=97.60  E-value=5e-05  Score=47.79  Aligned_cols=68  Identities=19%  Similarity=0.175  Sum_probs=55.6

Q ss_pred             cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH--------CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 034553            6 DCHNVKALYRRAQVYMEIADLILAELDIKKAIEA--------DPQNREVKLLQKSLKQLQAESNKRDAKFYANMFAR   74 (91)
Q Consensus         6 ~p~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l--------~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~mf~~   74 (91)
                      +|....+++.+|.++..+|++++|+..|++++++        +|....+...+..+....++..++.. .+.+....
T Consensus       123 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~-~~~~~l~~  198 (283)
T 3edt_B          123 HPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAET-LYKEILTR  198 (283)
T ss_dssp             CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHH-HHHHHHHH
T ss_pred             ChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHH-HHHHHHHH
Confidence            5778899999999999999999999999999999        66667788888888888887776643 44554443

>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*

Probab=97.53  E-value=0.00029  Score=47.73  Aligned_cols=85  Identities=13%  Similarity=0.167  Sum_probs=43.3

Q ss_pred             ccCCCHHHHHHHHHHHHH---h--C------CHHHHHHHHHHHHHHCCC--CHHHHHHHHHHHHHH-----HHHHHHHHH
Q 034553            5 CDCHNVKALYRRAQVYME---I--A------DLILAELDIKKAIEADPQ--NREVKLLQKSLKQLQ-----AESNKRDAK   66 (91)
Q Consensus         5 ~~p~~~ka~~rrg~a~~~---l--g------~~~~A~~~~~~al~l~p~--~~~~~~~l~~~~~~~-----~~~~~~~~~   66 (91)
                      .+|+++.++|..|.+...   .  |      ....|+..+++++++||+  +..+...+..+...+     +...++ +.
T Consensus       147 ~~~~dve~L~W~ai~~ss~a~~~~gg~~Al~~l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA-~~  225 (301)
T 3u64_A          147 CTRVDVGTLYWVGTGYVAAFALTPLGSALPDTVHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKA-HT  225 (301)
T ss_dssp             CCGGGHHHHHHHHHHHHHHHTTSCTTSCCHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHH-HH
T ss_pred             cCccccHHHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHH-HH
Confidence            455556666666555533   1  1      235555556666666665  344555555555443     233332 23


Q ss_pred             HHHHhhhcccCC-chhhhhhhhccc
Q 034553           67 FYANMFARVTKD-SSVATKVGYFAC   90 (91)
Q Consensus        67 ~~~~mf~~~~~~-~~~~~~~g~f~~   90 (91)
                      .+++.....++. -.++--||.|+|
T Consensus       226 ~ferAL~LnP~~~id~~v~YA~~l~  250 (301)
T 3u64_A          226 AFEHLTRYCSAHDPDHHITYADALC  250 (301)
T ss_dssp             HHHHHHHHCCTTCSHHHHHHHHHTT
T ss_pred             HHHHHHHhCCCCCchHHHHHHHHHH
Confidence            455555554432 555555666555

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=97.51  E-value=0.00011  Score=48.07  Aligned_cols=67  Identities=13%  Similarity=0.058  Sum_probs=52.2

Q ss_pred             HHHHHHHHHHHHHh-CCHHHHHHHHHHHHHHCCCC------HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccC
Q 034553           10 VKALYRRAQVYMEI-ADLILAELDIKKAIEADPQN------REVKLLQKSLKQLQAESNKRDAKFYANMFARVTK   77 (91)
Q Consensus        10 ~ka~~rrg~a~~~l-g~~~~A~~~~~~al~l~p~~------~~~~~~l~~~~~~~~~~~~~~~~~~~~mf~~~~~   77 (91)
                      ..++...|.++... |++++|+..|++++++.|++      ..+...+..+....+++.++. ..+.+.....+.
T Consensus       117 a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~-~~~~~al~~~~~  190 (292)
T 1qqe_A          117 ANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEAS-DIYSKLIKSSMG  190 (292)
T ss_dssp             HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH-HHHHHHHHTTSS
T ss_pred             HHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHH-HHHHHHHHHHhc
Confidence            56899999999995 99999999999999998864      356677777777777777764 356666655433

>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}

Probab=97.50  E-value=0.00029  Score=47.22  Aligned_cols=67  Identities=10%  Similarity=0.031  Sum_probs=49.1

Q ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHC--CC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccC
Q 034553           10 VKALYRRAQVYMEIADLILAELDIKKAIEAD--PQ-NREVKLLQKSLKQLQAESNKRDAKFYANMFARVTK   77 (91)
Q Consensus        10 ~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~--p~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~mf~~~~~   77 (91)
                      ..+++.+|.++..+|++++|+..|++++.-.  |. ..++...+..+...+++..++ ...++++....+.
T Consensus       171 ~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA-~~~l~~a~a~~P~  240 (282)
T 4f3v_A          171 GAAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAA-VALLEWLQTTHPE  240 (282)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHH-HHHHHHHHHHSCC
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHH-HHHHHHHHhcCCc
Confidence            3578888888888888888888888887543  55 456777777787777777766 3467777766554

>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*

Probab=97.50  E-value=0.00013  Score=49.44  Aligned_cols=54  Identities=6%  Similarity=-0.088  Sum_probs=45.6

Q ss_pred             CcccccCC--CHHHHHHHHHHHHHh-----CCHHHHHHHHHHHHHHCCCC-HHHHHHHHHHH
Q 034553            1 MVLDCDCH--NVKALYRRAQVYMEI-----ADLILAELDIKKAIEADPQN-REVKLLQKSLK   54 (91)
Q Consensus         1 ~al~~~p~--~~ka~~rrg~a~~~l-----g~~~~A~~~~~~al~l~p~~-~~~~~~l~~~~   54 (91)
                      +||++||+  +.-+|.-+|..|..+     |+.+.|...|++|++++|+. ..+........
T Consensus       188 rAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l  249 (301)
T 3u64_A          188 RACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADAL  249 (301)
T ss_dssp             HHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHT
T ss_pred             HHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHH
Confidence            47899999  666999999999996     99999999999999999974 66666655544

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}

Probab=97.44  E-value=8.8e-05  Score=49.69  Aligned_cols=55  Identities=13%  Similarity=-0.005  Sum_probs=29.1

Q ss_pred             CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCH----HHHHHHHHHHHHHHHHHH
Q 034553            8 HNVKALYRRAQVYMEIADLILAELDIKKAIEADPQNR----EVKLLQKSLKQLQAESNK   62 (91)
Q Consensus         8 ~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~----~~~~~l~~~~~~~~~~~~   62 (91)
                      .....++.+|.+++..|++++|+..|+++++++|++.    .+...+..+....++..+
T Consensus        46 ~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~  104 (411)
T 4a1s_A           46 SMCLELALEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNK  104 (411)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHH
T ss_pred             HHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHH
Confidence            3445555566666666666666666666666666554    234444444444443333

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A

Probab=97.39  E-value=8.8e-05  Score=46.65  Aligned_cols=67  Identities=19%  Similarity=0.123  Sum_probs=52.4

Q ss_pred             cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH--------CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 034553            6 DCHNVKALYRRAQVYMEIADLILAELDIKKAIEA--------DPQNREVKLLQKSLKQLQAESNKRDAKFYANMFA   73 (91)
Q Consensus         6 ~p~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l--------~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~mf~   73 (91)
                      +|..+.+++.+|.++..+|++++|+..|++++.+        +|....+...+..+....++..++.. .+.+.+.
T Consensus        81 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~-~~~~al~  155 (283)
T 3edt_B           81 HPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEY-YYRRALE  155 (283)
T ss_dssp             CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHH-HHHHHHH
T ss_pred             chHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHH-HHHHHHH
Confidence            4677889999999999999999999999999998        45556777777777777777666533 3444443

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}

Probab=97.36  E-value=0.00019  Score=45.91  Aligned_cols=29  Identities=10%  Similarity=0.028  Sum_probs=16.3

Q ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Q 034553           11 KALYRRAQVYMEIADLILAELDIKKAIEA   39 (91)
Q Consensus        11 ka~~rrg~a~~~lg~~~~A~~~~~~al~l   39 (91)
                      .+++.+|.++..+|++++|+..+++++.+
T Consensus        44 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~   72 (338)
T 3ro2_A           44 AIYSQLGNAYFYLHDYAKALEYHHHDLTL   72 (338)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            44555555555555555555555555554

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}

Probab=97.29  E-value=0.00067  Score=45.35  Aligned_cols=73  Identities=7%  Similarity=0.005  Sum_probs=58.5

Q ss_pred             cccccCCCH----HHHHHHHHHHHHhCCHHHHHHHHHHHHHH------CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 034553            2 VLDCDCHNV----KALYRRAQVYMEIADLILAELDIKKAIEA------DPQNREVKLLQKSLKQLQAESNKRDAKFYANM   71 (91)
Q Consensus         2 al~~~p~~~----ka~~rrg~a~~~lg~~~~A~~~~~~al~l------~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~m   71 (91)
                      +++++|++.    .+|+.+|.++..+|++++|+..|++++++      +|....+...+..+....++..++ ...+.+.
T Consensus        74 al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A-~~~~~~a  152 (411)
T 4a1s_A           74 AIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNLGNTLKVMGRFDEA-AICCERH  152 (411)
T ss_dssp             HHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH-HHHHHHH
T ss_pred             HHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCHHHH-HHHHHHH
Confidence            567788887    58999999999999999999999999998      455557777777777777766654 5667777


Q ss_pred             hhcc
Q 034553           72 FARV   75 (91)
Q Consensus        72 f~~~   75 (91)
                      ....
T Consensus       153 l~~~  156 (411)
T 4a1s_A          153 LTLA  156 (411)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            7664

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}

Probab=97.27  E-value=0.0002  Score=47.43  Aligned_cols=54  Identities=6%  Similarity=-0.074  Sum_probs=31.3

Q ss_pred             CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCH----HHHHHHHHHHHHHHHHH
Q 034553            8 HNVKALYRRAQVYMEIADLILAELDIKKAIEADPQNR----EVKLLQKSLKQLQAESN   61 (91)
Q Consensus         8 ~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~----~~~~~l~~~~~~~~~~~   61 (91)
                      ....+++.+|.+++..|++++|+..|+++++++|++.    .+...+..+....++..
T Consensus         7 ~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~   64 (406)
T 3sf4_A            7 ASCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYA   64 (406)
T ss_dssp             CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHH
Confidence            3455666666666666666666666666666666663    23444444444443333

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A

Probab=97.25  E-value=0.0028  Score=44.04  Aligned_cols=73  Identities=10%  Similarity=-0.032  Sum_probs=60.9

Q ss_pred             cccccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccc
Q 034553            2 VLDCDCHNVKALYRRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQKSLKQLQAESNKRDAKFYANMFARVT   76 (91)
Q Consensus         2 al~~~p~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~mf~~~~   76 (91)
                      ++.++|..+.+|...|.++...|++++|+..+++|+.++|+ ......+..+....++..++. ..+.+.|...+
T Consensus       269 a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s-~~a~~llG~~~~~~G~~~eA~-e~~~~AlrL~P  341 (372)
T 3ly7_A          269 TLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMS-WLNYVLLGKVYEMKGMNREAA-DAYLTAFNLRP  341 (372)
T ss_dssp             TCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHTTCHHHHH-HHHHHHHHHSC
T ss_pred             hcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHCCCHHHHH-HHHHHHHhcCC
Confidence            45788999999999999999999999999999999999975 666678888888888888774 45677776644

>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}

Probab=97.20  E-value=0.00097  Score=47.61  Aligned_cols=65  Identities=12%  Similarity=0.093  Sum_probs=49.4

Q ss_pred             CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH-----CCCCH---HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 034553            7 CHNVKALYRRAQVYMEIADLILAELDIKKAIEA-----DPQNR---EVKLLQKSLKQLQAESNKRDAKFYANMF   72 (91)
Q Consensus         7 p~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l-----~p~~~---~~~~~l~~~~~~~~~~~~~~~~~~~~mf   72 (91)
                      |+-...++++|.+|..+|+|++|+..|++|+++     -|+++   ++...+..+...++.+++++. +|+++-
T Consensus       390 p~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~-~~~~~~  462 (490)
T 3n71_A          390 AQLGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEF-MYHKMR  462 (490)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHH
T ss_pred             HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHH
Confidence            445667999999999999999999999999986     46665   555667777777777766654 455543

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}

Probab=97.12  E-value=0.00091  Score=42.62  Aligned_cols=60  Identities=13%  Similarity=0.018  Sum_probs=48.9

Q ss_pred             ccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH--------CCCCHHHHHHHHHHHHHHHHHHHHH
Q 034553            5 CDCHNVKALYRRAQVYMEIADLILAELDIKKAIEA--------DPQNREVKLLQKSLKQLQAESNKRD   64 (91)
Q Consensus         5 ~~p~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l--------~p~~~~~~~~l~~~~~~~~~~~~~~   64 (91)
                      -+|.++.+++.+|.++...|++++|+..|++++++        +|....+...+..+....++..++.
T Consensus        22 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~   89 (311)
T 3nf1_A           22 EIPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAA   89 (311)
T ss_dssp             TSCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             cchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHH
Confidence            36788999999999999999999999999999997        4555567777777777766666653

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}

Probab=97.09  E-value=0.0046  Score=40.76  Aligned_cols=74  Identities=4%  Similarity=-0.026  Sum_probs=52.5

Q ss_pred             cccccCCC----HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCC--CH----HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 034553            2 VLDCDCHN----VKALYRRAQVYMEIADLILAELDIKKAIEADPQ--NR----EVKLLQKSLKQLQAESNKRDAKFYANM   71 (91)
Q Consensus         2 al~~~p~~----~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~--~~----~~~~~l~~~~~~~~~~~~~~~~~~~~m   71 (91)
                      +++++|++    ..+++.+|.++..+|++++|+..+++++.+.+.  +.    .+...+..+....+...++ ...+.+.
T Consensus        35 al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A-~~~~~~a  113 (406)
T 3sf4_A           35 AVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEA-IVCCQRH  113 (406)
T ss_dssp             HHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH-HHHHHHH
T ss_pred             HHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHcCCHHHH-HHHHHHH
Confidence            56678887    468999999999999999999999999998654  33    2444455555544544443 4556666


Q ss_pred             hhccc
Q 034553           72 FARVT   76 (91)
Q Consensus        72 f~~~~   76 (91)
                      ....+
T Consensus       114 l~~~~  118 (406)
T 3sf4_A          114 LDISR  118 (406)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            66654

>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1

Probab=97.08  E-value=0.0036  Score=39.84  Aligned_cols=48  Identities=15%  Similarity=0.027  Sum_probs=34.7

Q ss_pred             CCCHHHHHHHHHHHHH----hCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Q 034553            7 CHNVKALYRRAQVYME----IADLILAELDIKKAIEADPQNREVKLLQKSLKQL   56 (91)
Q Consensus         7 p~~~ka~~rrg~a~~~----lg~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~   56 (91)
                      |+++.+++.+|.++..    .+++++|+..|+++++++  +..+...+..+...
T Consensus        35 ~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~   86 (273)
T 1ouv_A           35 LKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN--YSNGCHLLGNLYYS   86 (273)
T ss_dssp             TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC--CHHHHHHHHHHHhC
Confidence            6677777777777777    777777777777777764  56666666666555

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}

Probab=97.05  E-value=0.00096  Score=42.51  Aligned_cols=67  Identities=18%  Similarity=0.155  Sum_probs=53.7

Q ss_pred             cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH--------CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 034553            6 DCHNVKALYRRAQVYMEIADLILAELDIKKAIEA--------DPQNREVKLLQKSLKQLQAESNKRDAKFYANMFA   73 (91)
Q Consensus         6 ~p~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l--------~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~mf~   73 (91)
                      +|....+++.+|.++..+|++++|+..|++++++        +|....+...+..+....++..++.. .+.++..
T Consensus       149 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~-~~~~al~  223 (311)
T 3nf1_A          149 HPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAET-LYKEILT  223 (311)
T ss_dssp             CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHH-HHHHHHH
T ss_pred             ChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHH-HHHHHHH
Confidence            4667889999999999999999999999999998        66666778888888888777776643 4455443

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}

Probab=97.04  E-value=0.00064  Score=44.73  Aligned_cols=34  Identities=6%  Similarity=0.041  Sum_probs=25.6

Q ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCC
Q 034553           10 VKALYRRAQVYMEIADLILAELDIKKAIEADPQN   43 (91)
Q Consensus        10 ~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~   43 (91)
                      ..++...|.++..+|+|++|+..|++++++.|++
T Consensus       155 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~  188 (307)
T 2ifu_A          155 AELIGKASRLLVRQQKFDEAAASLQKEKSMYKEM  188 (307)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHc
Confidence            5677777888888888888888888888776543

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}

Probab=97.00  E-value=0.00036  Score=46.80  Aligned_cols=58  Identities=7%  Similarity=0.003  Sum_probs=43.3

Q ss_pred             CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCC-------HHHHHHHHHHHHHHHHHHHHH
Q 034553            7 CHNVKALYRRAQVYMEIADLILAELDIKKAIEADPQN-------REVKLLQKSLKQLQAESNKRD   64 (91)
Q Consensus         7 p~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~-------~~~~~~l~~~~~~~~~~~~~~   64 (91)
                      +..+.+++.+|.++..+|+++.|+..+++|+++.+..       ..+...+..+....++..++.
T Consensus       140 ~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~  204 (383)
T 3ulq_A          140 IEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLFATNFLDLKQYEDAI  204 (383)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHHHHHhcCHHHHH
Confidence            3466889999999999999999999999999985433       245666666666666666653

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A

Probab=96.91  E-value=0.001  Score=46.22  Aligned_cols=43  Identities=14%  Similarity=-0.032  Sum_probs=38.8

Q ss_pred             CcccccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCH
Q 034553            1 MVLDCDCHNVKALYRRAQVYMEIADLILAELDIKKAIEADPQNR   44 (91)
Q Consensus         1 ~al~~~p~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~   44 (91)
                      +||.++| +.-+|..+|.++...|++++|++.|.+|+.++|...
T Consensus       302 rAl~Ln~-s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~~~  344 (372)
T 3ly7_A          302 TGIDLEM-SWLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGAN  344 (372)
T ss_dssp             HHHHHCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCSHH
T ss_pred             HHHhcCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcC
Confidence            3678887 478999999999999999999999999999999865

>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}

Probab=96.90  E-value=0.0011  Score=41.37  Aligned_cols=51  Identities=12%  Similarity=0.073  Sum_probs=28.9

Q ss_pred             cCCCHHHHHHHHHHHHH----hCCHHHHHHHHHHHHHHCCC--CHHHHHHHHHHHHH
Q 034553            6 DCHNVKALYRRAQVYME----IADLILAELDIKKAIEADPQ--NREVKLLQKSLKQL   56 (91)
Q Consensus         6 ~p~~~ka~~rrg~a~~~----lg~~~~A~~~~~~al~l~p~--~~~~~~~l~~~~~~   56 (91)
                      +++++.+++.+|.++..    .+++++|+..|+++++..|.  +..+...|..+...
T Consensus        81 ~~g~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~  137 (212)
T 3rjv_A           81 EAGSKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYAS  137 (212)
T ss_dssp             HTTCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHH
T ss_pred             HCCCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHc
Confidence            34566666666666655    55666666666666666552  24555555544443

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}

Probab=96.86  E-value=0.009  Score=37.94  Aligned_cols=55  Identities=7%  Similarity=-0.052  Sum_probs=43.8

Q ss_pred             CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCH----HHHHHHHHHHHHHHHHHHH
Q 034553            9 NVKALYRRAQVYMEIADLILAELDIKKAIEADPQNR----EVKLLQKSLKQLQAESNKR   63 (91)
Q Consensus         9 ~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~----~~~~~l~~~~~~~~~~~~~   63 (91)
                      +...++..|.+++..|++++|+..|+++++++|++.    .+...+..+....++..++
T Consensus         4 ~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A   62 (338)
T 3ro2_A            4 SCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKA   62 (338)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHH
Confidence            356789999999999999999999999999999985    4555666666555555444

>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}

Probab=96.81  E-value=0.0055  Score=39.75  Aligned_cols=55  Identities=16%  Similarity=0.047  Sum_probs=43.7

Q ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHH---HHCCCCH----HHHHHHHHHHHHHHHHHHHH
Q 034553           10 VKALYRRAQVYMEIADLILAELDIKKAI---EADPQNR----EVKLLQKSLKQLQAESNKRD   64 (91)
Q Consensus        10 ~ka~~rrg~a~~~lg~~~~A~~~~~~al---~l~p~~~----~~~~~l~~~~~~~~~~~~~~   64 (91)
                      ..+++..|.++..+|+|++|+..|++++   +..|++.    .+...+..+....+++.++.
T Consensus       155 ~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al  216 (293)
T 2qfc_A          155 LYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESL  216 (293)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHH
Confidence            6789999999999999999999999999   4566654    46667777777777766653

>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A

Probab=96.75  E-value=0.0015  Score=42.49  Aligned_cols=58  Identities=14%  Similarity=0.052  Sum_probs=47.2

Q ss_pred             cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCC------HHHHHHHHHHHHHHHH-HHHH
Q 034553            6 DCHNVKALYRRAQVYMEIADLILAELDIKKAIEADPQN------REVKLLQKSLKQLQAE-SNKR   63 (91)
Q Consensus         6 ~p~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~------~~~~~~l~~~~~~~~~-~~~~   63 (91)
                      .|..+.+++..|.++..+|+|++|+..+++++++.+..      ..+...+..+...+++ ..++
T Consensus       192 ~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~~A  256 (293)
T 3u3w_A          192 EEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEI  256 (293)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHHHHHHHHHTTCCHHHH
T ss_pred             hhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhCCcHHHH
Confidence            34456789999999999999999999999999987554      5788888888888773 3444

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}

Probab=96.73  E-value=0.0049  Score=41.26  Aligned_cols=65  Identities=15%  Similarity=0.008  Sum_probs=46.8

Q ss_pred             CHHHHHHHHHHHHHhCCHHHHHHHHHHHHH-----HCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 034553            9 NVKALYRRAQVYMEIADLILAELDIKKAIE-----ADPQNREVKLLQKSLKQLQAESNKRDAKFYANMFAR   74 (91)
Q Consensus         9 ~~ka~~rrg~a~~~lg~~~~A~~~~~~al~-----l~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~mf~~   74 (91)
                      ...+++.+|.++..+|++++|+..|+++++     .+|....+...+..+....++..++.. .+.+....
T Consensus       221 ~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~-~~~~al~~  290 (378)
T 3q15_A          221 IAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQ-FIEEGLDH  290 (378)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHTTCHHHHHH-HHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHCCCHHHHHH-HHHHHHHH
Confidence            346788888888888888888888888888     566666777777777777777666533 34444443

>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}

Probab=96.72  E-value=0.0081  Score=40.20  Aligned_cols=44  Identities=11%  Similarity=-0.071  Sum_probs=31.9

Q ss_pred             CC-CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHH
Q 034553            7 CH-NVKALYRRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQK   51 (91)
Q Consensus         7 p~-~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~~~~~l~   51 (91)
                      |. .+.+++++|.++..+|+.++|...|++++..+|+ ..+...|.
T Consensus       204 P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~-~~~~~aL~  248 (282)
T 4f3v_A          204 EACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE-PKVAAALK  248 (282)
T ss_dssp             TTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC-HHHHHHHH
T ss_pred             ccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-HHHHHHHh
Confidence            44 5667777777777777777777777777777777 66655553

>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}

Probab=96.71  E-value=0.0034  Score=39.17  Aligned_cols=54  Identities=13%  Similarity=-0.023  Sum_probs=43.9

Q ss_pred             cccccC--CCHHHHHHHHHHHHH----hCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Q 034553            2 VLDCDC--HNVKALYRRAQVYME----IADLILAELDIKKAIEADPQNREVKLLQKSLKQL   56 (91)
Q Consensus         2 al~~~p--~~~ka~~rrg~a~~~----lg~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~   56 (91)
                      +++.+|  +++.+++.+|.++..    .+++++|+..|++++++ |.+..+...|..+...
T Consensus       115 A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~-~~~~~a~~~Lg~~y~~  174 (212)
T 3rjv_A          115 AARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSL-SRTGYAEYWAGMMFQQ  174 (212)
T ss_dssp             HTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT-SCTTHHHHHHHHHHHH
T ss_pred             HHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHc
Confidence            345555  359999999999999    88999999999999999 6667777777776543

>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1

Probab=96.69  E-value=0.0029  Score=38.87  Aligned_cols=73  Identities=8%  Similarity=0.044  Sum_probs=60.1

Q ss_pred             ccccCCCHHHHHHHHHHHHHhC---CHHHHHHHHHHHHHHC-C-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccc
Q 034553            3 LDCDCHNVKALYRRAQVYMEIA---DLILAELDIKKAIEAD-P-QNREVKLLQKSLKQLQAESNKRDAKFYANMFARVT   76 (91)
Q Consensus         3 l~~~p~~~ka~~rrg~a~~~lg---~~~~A~~~~~~al~l~-p-~~~~~~~~l~~~~~~~~~~~~~~~~~~~~mf~~~~   76 (91)
                      ++.+|.+.++.|+.|.++.++.   +.++++..|+.+++.+ | ++.++.-.+.....+++++.++. ..+..++..-+
T Consensus        25 ~~~~~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~-~y~~~lL~ieP  102 (152)
T 1pc2_A           25 KAAGSVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKAL-KYVRGLLQTEP  102 (152)
T ss_dssp             HHTTCCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHH-HHHHHHHHHCT
T ss_pred             HccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHH-HHHHHHHhcCC
Confidence            3456889999999999999999   7779999999999999 7 56788899998888888888773 45666665544

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}

Probab=96.59  E-value=0.0078  Score=40.22  Aligned_cols=55  Identities=16%  Similarity=0.082  Sum_probs=44.1

Q ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHHH-----C-CCCHHHHHHHHHHHHHHHHHHHHH
Q 034553           10 VKALYRRAQVYMEIADLILAELDIKKAIEA-----D-PQNREVKLLQKSLKQLQAESNKRD   64 (91)
Q Consensus        10 ~ka~~rrg~a~~~lg~~~~A~~~~~~al~l-----~-p~~~~~~~~l~~~~~~~~~~~~~~   64 (91)
                      ..+++.+|.++..+|++++|+..|++++++     + |....+...+..+....++..++.
T Consensus       224 ~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~  284 (383)
T 3ulq_A          224 GRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAH  284 (383)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHCCCHHHHH
Confidence            358899999999999999999999999994     5 666677777777777776666553

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}

Probab=96.59  E-value=0.012  Score=33.34  Aligned_cols=30  Identities=17%  Similarity=0.088  Sum_probs=19.7

Q ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Q 034553           10 VKALYRRAQVYMEIADLILAELDIKKAIEA   39 (91)
Q Consensus        10 ~ka~~rrg~a~~~lg~~~~A~~~~~~al~l   39 (91)
                      ..+++.+|.++..+|++++|+..+++++++
T Consensus        89 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~  118 (164)
T 3ro3_A           89 AQSCYSLGNTYTLLQDYEKAIDYHLKHLAI  118 (164)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence            445666666666666666666666666665

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}

Probab=96.58  E-value=0.0053  Score=36.88  Aligned_cols=60  Identities=10%  Similarity=-0.073  Sum_probs=44.5

Q ss_pred             ccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH---CCCCH----HHHHHHHHHHHHHHHHHHHH
Q 034553            5 CDCHNVKALYRRAQVYMEIADLILAELDIKKAIEA---DPQNR----EVKLLQKSLKQLQAESNKRD   64 (91)
Q Consensus         5 ~~p~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l---~p~~~----~~~~~l~~~~~~~~~~~~~~   64 (91)
                      ..|....+++.+|.++..+|++++|+..+++++.+   .|++.    .+...+..+....++..++.
T Consensus        61 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~  127 (203)
T 3gw4_A           61 DHTAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGAR  127 (203)
T ss_dssp             CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred             CcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHH
Confidence            44566788999999999999999999999999998   44332    45666666666666665553

>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}

Probab=96.56  E-value=0.0051  Score=39.88  Aligned_cols=53  Identities=13%  Similarity=0.040  Sum_probs=43.5

Q ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCC------HHHHHHHHHHHHHHHHHHHH
Q 034553           11 KALYRRAQVYMEIADLILAELDIKKAIEADPQN------REVKLLQKSLKQLQAESNKR   63 (91)
Q Consensus        11 ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~------~~~~~~l~~~~~~~~~~~~~   63 (91)
                      .+++..|.++..+|+|++|+..+++++++.++.      ..+...+..+...+++..++
T Consensus       197 ~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A  255 (293)
T 2qfc_A          197 KVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAE  255 (293)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHHHHHHHHHHHHHHTTCCHHH
T ss_pred             HHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCCcHHH
Confidence            799999999999999999999999999986431      46677777777777666555

>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B

Probab=96.52  E-value=0.014  Score=39.63  Aligned_cols=66  Identities=18%  Similarity=0.166  Sum_probs=47.8

Q ss_pred             ccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 034553            5 CDCHNVKALYRRAQVYMEIADLILAELDIKKAIEADP--QNREVKLLQKSLKQLQAESNKRDAKFYANM   71 (91)
Q Consensus         5 ~~p~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p--~~~~~~~~l~~~~~~~~~~~~~~~~~~~~m   71 (91)
                      ..+...-+++..|.++...|++++|+..+.+++..+|  ++.++...+..+.-.+++...+.+ .+++|
T Consensus        95 ~~~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k-~l~~~  162 (310)
T 3mv2_B           95 DKQNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTAST-IFDNY  162 (310)
T ss_dssp             TSCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHH-HHHHH
T ss_pred             cCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHH-HHHHH
Confidence            3455677788999999999999999999999988887  566666666666666555555432 34444

>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}

Probab=96.48  E-value=0.0036  Score=43.44  Aligned_cols=67  Identities=13%  Similarity=0.069  Sum_probs=46.6

Q ss_pred             CCCHHHHHHHHHHHHH----hCCHHHHHHHHHHHHHHCCC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccc
Q 034553            7 CHNVKALYRRAQVYME----IADLILAELDIKKAIEADPQ---NREVKLLQKSLKQLQAESNKRDAKFYANMFARVT   76 (91)
Q Consensus         7 p~~~ka~~rrg~a~~~----lg~~~~A~~~~~~al~l~p~---~~~~~~~l~~~~~~~~~~~~~~~~~~~~mf~~~~   76 (91)
                      ..++.+++++|.++..    .+++++|+..|+++++.+|+   +..+...+..+....  ... .....+++|.+.+
T Consensus       396 ~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~~a~~~l~~~~~~~--~~~-a~~~a~~~~~~~~  469 (490)
T 2xm6_A          396 QGLSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTNDMNLFGTENRNITEKKLTAKQ--LQQ-AELLSQQYIEKYA  469 (490)
T ss_dssp             TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHTTSCHHH--HHH-HHHHHHHHHHHHC
T ss_pred             CCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCCCcCCHHHHHHHHhcCHhH--HHH-HHHHHHHHHHHHH
Confidence            4578888999999888    88999999999999998854   667777666654321  111 1234666776654

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}

Probab=96.41  E-value=0.0083  Score=34.11  Aligned_cols=53  Identities=15%  Similarity=0.036  Sum_probs=38.4

Q ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCC------HHHHHHHHHHHHHHHHHHHH
Q 034553           11 KALYRRAQVYMEIADLILAELDIKKAIEADPQN------REVKLLQKSLKQLQAESNKR   63 (91)
Q Consensus        11 ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~------~~~~~~l~~~~~~~~~~~~~   63 (91)
                      .+++..|.++..+|++++|+..+++++.+.|..      ..+...+..+....++..++
T Consensus        50 ~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A  108 (164)
T 3ro3_A           50 IAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKA  108 (164)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhhHHHH
Confidence            578889999999999999999999999876542      23455555555555555554

>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*

Probab=96.40  E-value=0.0045  Score=43.56  Aligned_cols=65  Identities=12%  Similarity=-0.016  Sum_probs=48.3

Q ss_pred             CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH-----CCCCHH---HHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 034553            7 CHNVKALYRRAQVYMEIADLILAELDIKKAIEA-----DPQNRE---VKLLQKSLKQLQAESNKRDAKFYANMF   72 (91)
Q Consensus         7 p~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l-----~p~~~~---~~~~l~~~~~~~~~~~~~~~~~~~~mf   72 (91)
                      |.-...+..+|.+|..+|+|++|+..++++|++     -|++++   ....|..+....+++.+++. .+.+.+
T Consensus       337 p~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~qg~~~eA~~-~~~~Al  409 (433)
T 3qww_A          337 VYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRLYMGLENKAAGEK-ALKKAI  409 (433)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHH-HHHHHH
T ss_pred             hHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhccCHHHHHH-HHHHHH
Confidence            344567899999999999999999999999986     466664   55566777777777777654 444443

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}

Probab=96.35  E-value=0.0042  Score=37.32  Aligned_cols=59  Identities=7%  Similarity=-0.001  Sum_probs=46.4

Q ss_pred             cC-CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHC------CCCHHHHHHHHHHHHHHHHHHHHH
Q 034553            6 DC-HNVKALYRRAQVYMEIADLILAELDIKKAIEAD------PQNREVKLLQKSLKQLQAESNKRD   64 (91)
Q Consensus         6 ~p-~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~------p~~~~~~~~l~~~~~~~~~~~~~~   64 (91)
                      +| ....+++.+|.++..+|++++|+..+++++++.      |....+...+..+....++..++.
T Consensus        21 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~   86 (203)
T 3gw4_A           21 HPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDAAR   86 (203)
T ss_dssp             STTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             ChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHHHHH
Confidence            44 678899999999999999999999999999952      333456777777777777666653

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}

Probab=96.27  E-value=0.0056  Score=40.14  Aligned_cols=62  Identities=18%  Similarity=0.001  Sum_probs=43.1

Q ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCC------HHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 034553           10 VKALYRRAQVYMEIADLILAELDIKKAIEADPQN------REVKLLQKSLKQLQAESNKRDAKFYANMFA   73 (91)
Q Consensus        10 ~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~------~~~~~~l~~~~~~~~~~~~~~~~~~~~mf~   73 (91)
                      ..++...|.++.. |++++|+..|++++++.|..      ..+...+..+...++++.++.. .+.+...
T Consensus       116 a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~-~~~~al~  183 (307)
T 2ifu_A          116 AMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAA-SLQKEKS  183 (307)
T ss_dssp             HHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH-HHHHHHH
T ss_pred             HHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHH-HHHHHHH
Confidence            4678888888888 99999999999999887643      3456666666666666665532 3444443

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}

Probab=96.15  E-value=0.008  Score=40.23  Aligned_cols=38  Identities=11%  Similarity=-0.061  Sum_probs=35.0

Q ss_pred             ccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCC
Q 034553            5 CDCHNVKALYRRAQVYMEIADLILAELDIKKAIEADPQ   42 (91)
Q Consensus         5 ~~p~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~   42 (91)
                      .+|..+.+++..|.++..+|++++|+..+++++++.+.
T Consensus       256 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  293 (378)
T 3q15_A          256 VPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITA  293 (378)
T ss_dssp             CGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCT
T ss_pred             CChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence            67888999999999999999999999999999999653

>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1

Probab=96.15  E-value=0.047  Score=31.83  Aligned_cols=48  Identities=15%  Similarity=-0.002  Sum_probs=41.6

Q ss_pred             CCCHHHHHHHHHHHHH----hCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Q 034553            7 CHNVKALYRRAQVYME----IADLILAELDIKKAIEADPQNREVKLLQKSLKQL   56 (91)
Q Consensus         7 p~~~ka~~rrg~a~~~----lg~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~   56 (91)
                      .+++.|++.+|.++..    .+++++|+..|+++.+.  .++.+...|..+...
T Consensus        54 ~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~  105 (138)
T 1klx_A           54 LNSGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGL--NDQDGCLILGYKQYA  105 (138)
T ss_dssp             TTCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHcC--CCHHHHHHHHHHHHC
Confidence            4789999999999998    89999999999999986  677888888777665

>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}

Probab=95.98  E-value=0.0096  Score=42.49  Aligned_cols=65  Identities=6%  Similarity=0.006  Sum_probs=48.2

Q ss_pred             cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH-----CCCCHH---HHHHHHHHHHHHHHHHHHHHHHHHHh
Q 034553            6 DCHNVKALYRRAQVYMEIADLILAELDIKKAIEA-----DPQNRE---VKLLQKSLKQLQAESNKRDAKFYANM   71 (91)
Q Consensus         6 ~p~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l-----~p~~~~---~~~~l~~~~~~~~~~~~~~~~~~~~m   71 (91)
                      +|.-...+..+|.+|..+|+|++|+..++++|++     -|+++.   ....|..+....+++.+++. .+.+.
T Consensus       347 Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~~G~~~eA~~-~~~~A  419 (490)
T 3n71_A          347 NLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMRAGLTNWHAGHIEVGHG-MICKA  419 (490)
T ss_dssp             SHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTTCHHHHHH-HHHHH
T ss_pred             CHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHH-HHHHH
Confidence            3445678999999999999999999999999987     466664   55566666666667766643 34433

>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*

Probab=95.98  E-value=0.03  Score=39.15  Aligned_cols=49  Identities=8%  Similarity=0.024  Sum_probs=38.5

Q ss_pred             cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH-----CCCCHHHHHHHHHHH
Q 034553            6 DCHNVKALYRRAQVYMEIADLILAELDIKKAIEA-----DPQNREVKLLQKSLK   54 (91)
Q Consensus         6 ~p~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l-----~p~~~~~~~~l~~~~   54 (91)
                      .|.-...++++|.+|..+|++++|+..|++|+++     -|+++.+...+..+.
T Consensus       367 Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~  420 (429)
T 3qwp_A          367 HPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIEDLILLLE  420 (429)
T ss_dssp             CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHH
T ss_pred             ChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHH
Confidence            3445567999999999999999999999999986     577776555544433

>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*

Probab=95.83  E-value=0.023  Score=39.95  Aligned_cols=47  Identities=15%  Similarity=0.244  Sum_probs=38.0

Q ss_pred             cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH-----CCCCHHHHHHHHH
Q 034553            6 DCHNVKALYRRAQVYMEIADLILAELDIKKAIEA-----DPQNREVKLLQKS   52 (91)
Q Consensus         6 ~p~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l-----~p~~~~~~~~l~~   52 (91)
                      .|+-...++++|.+|..+|+|++|+..|++|+++     -|+++.+......
T Consensus       378 Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~l~~~  429 (433)
T 3qww_A          378 SLNVASMWLKLGRLYMGLENKAAGEKALKKAIAIMEVAHGKDHPYISEIKQE  429 (433)
T ss_dssp             CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHH
T ss_pred             ChHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHH
Confidence            3445567999999999999999999999999996     5777766654443

>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*

Probab=95.66  E-value=0.016  Score=40.57  Aligned_cols=59  Identities=12%  Similarity=-0.030  Sum_probs=45.0

Q ss_pred             CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH-----CCCCHH---HHHHHHHHHHHHHHHHHHHH
Q 034553            7 CHNVKALYRRAQVYMEIADLILAELDIKKAIEA-----DPQNRE---VKLLQKSLKQLQAESNKRDA   65 (91)
Q Consensus         7 p~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l-----~p~~~~---~~~~l~~~~~~~~~~~~~~~   65 (91)
                      |.-...+...|.+|..+|+|++|+..+++++++     -|+++.   ....|..+....+++.+++.
T Consensus       326 ~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~nLa~~~~~~g~~~eA~~  392 (429)
T 3qwp_A          326 IYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMKVGKLQLHQGMFPQAMK  392 (429)
T ss_dssp             HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             hHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHHHHHHHHhcCCHHHHHH
Confidence            334577899999999999999999999999986     366664   45566666666666666643

>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A

Probab=95.65  E-value=0.013  Score=37.92  Aligned_cols=55  Identities=13%  Similarity=0.017  Sum_probs=42.8

Q ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHC---CCCH----HHHHHHHHHHHHHHHHHHHH
Q 034553           10 VKALYRRAQVYMEIADLILAELDIKKAIEAD---PQNR----EVKLLQKSLKQLQAESNKRD   64 (91)
Q Consensus        10 ~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~---p~~~----~~~~~l~~~~~~~~~~~~~~   64 (91)
                      ..++...|.++..+|+|++|+..|++++++-   |.+.    .+...+..+....+++.++.
T Consensus       155 ~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~  216 (293)
T 3u3w_A          155 LYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESL  216 (293)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHH
Confidence            4579999999999999999999999999642   2332    46677777777777776653

>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A

Probab=95.61  E-value=0.023  Score=42.10  Aligned_cols=72  Identities=10%  Similarity=0.009  Sum_probs=59.0

Q ss_pred             cccccCCCHHHHHHHHHHHHHhCCHHHHH-HHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 034553            2 VLDCDCHNVKALYRRAQVYMEIADLILAE-LDIKKAIEADPQNREVKLLQKSLKQLQAESNKRDAKFYANMFAR   74 (91)
Q Consensus         2 al~~~p~~~ka~~rrg~a~~~lg~~~~A~-~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~mf~~   74 (91)
                      +|...|.+++.|+..+.-+...|+.++|+ ..|.+|+...|.+..++-.+..+....+...+. +..|.+++..
T Consensus       335 aL~~~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~P~s~~Lwl~~a~~ee~~~~~e~a-R~iyek~l~~  407 (679)
T 4e6h_A          335 AAQHVCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQCIPNSAVLAFSLSEQYELNTKIPEI-ETTILSCIDR  407 (679)
T ss_dssp             HHHHTTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH-HHHHHHHHHH
T ss_pred             HHHHcCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHH-HHHHHHHHHH
Confidence            56778999999999999999999999997 999999999999988877777777776665443 4456666654

>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}

Probab=95.19  E-value=0.059  Score=37.38  Aligned_cols=47  Identities=6%  Similarity=-0.072  Sum_probs=38.3

Q ss_pred             CCHHHHHHHHHHHHHhC---CHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Q 034553            8 HNVKALYRRAQVYMEIA---DLILAELDIKKAIEADPQNREVKLLQKSLK   54 (91)
Q Consensus         8 ~~~ka~~rrg~a~~~lg---~~~~A~~~~~~al~l~p~~~~~~~~l~~~~   54 (91)
                      .++.+++.+|.++...|   ++++|+..|+++.+..|.+......+..+.
T Consensus       174 ~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y  223 (452)
T 3e4b_A          174 TTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVTAQRVDSVARVL  223 (452)
T ss_dssp             TCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            34459999999999999   999999999999999988887655665554

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2

Probab=94.99  E-value=0.099  Score=34.45  Aligned_cols=57  Identities=16%  Similarity=0.022  Sum_probs=42.7

Q ss_pred             CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCC-----HHHHHHHHHHHHHHHHHHHH
Q 034553            7 CHNVKALYRRAQVYMEIADLILAELDIKKAIEADPQN-----REVKLLQKSLKQLQAESNKR   63 (91)
Q Consensus         7 p~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~-----~~~~~~l~~~~~~~~~~~~~   63 (91)
                      |....++..+|.++..+|++++|...+++++.+.|..     ..+...+..+....++..++
T Consensus       132 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A  193 (373)
T 1hz4_A          132 PMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNA  193 (373)
T ss_dssp             THHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHH
T ss_pred             cHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHcCCHHHH
Confidence            4456778889999999999999999999999998753     23455566666655555554

>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}

Probab=94.76  E-value=0.17  Score=34.99  Aligned_cols=49  Identities=16%  Similarity=0.053  Sum_probs=32.2

Q ss_pred             cCCCHHHHHHHHHHHHH----hCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Q 034553            6 DCHNVKALYRRAQVYME----IADLILAELDIKKAIEADPQNREVKLLQKSLKQL   56 (91)
Q Consensus         6 ~p~~~ka~~rrg~a~~~----lg~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~   56 (91)
                      +++++.+++..|.++..    .++++.|+..|+++++.  ++..+...|..+...
T Consensus        35 ~~g~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~   87 (490)
T 2xm6_A           35 ESGEAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQ--GYTPAEYVLGLRYMN   87 (490)
T ss_dssp             HTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHH
T ss_pred             HCCCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHc
Confidence            45667777777777776    67777777777777664  455565555555444

>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1

Probab=94.67  E-value=0.1  Score=30.36  Aligned_cols=41  Identities=7%  Similarity=-0.054  Sum_probs=34.4

Q ss_pred             CCCHHHHHHHHHHHHH----hCCHHHHHHHHHHHHHHCCCCHHHHHH
Q 034553            7 CHNVKALYRRAQVYME----IADLILAELDIKKAIEADPQNREVKLL   49 (91)
Q Consensus         7 p~~~ka~~rrg~a~~~----lg~~~~A~~~~~~al~l~p~~~~~~~~   49 (91)
                      ..++.+++.+|.++..    .+++++|+..|+++.+..  +..+...
T Consensus        90 ~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g--~~~A~~~  134 (138)
T 1klx_A           90 LNDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG--SEDACGI  134 (138)
T ss_dssp             TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHH
T ss_pred             CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC--CHHHHHH
Confidence            3689999999999999    899999999999999974  4444443

>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B

Probab=94.55  E-value=0.14  Score=34.66  Aligned_cols=73  Identities=14%  Similarity=0.082  Sum_probs=49.5

Q ss_pred             ccccC--CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCC----CHHHHHHHHHH--HHHHH--HHHHHHHHHHHHhh
Q 034553            3 LDCDC--HNVKALYRRAQVYMEIADLILAELDIKKAIEADPQ----NREVKLLQKSL--KQLQA--ESNKRDAKFYANMF   72 (91)
Q Consensus         3 l~~~p--~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~----~~~~~~~l~~~--~~~~~--~~~~~~~~~~~~mf   72 (91)
                      |..+|  ++.+++...+.+++.+|+.+.|.+.+++..+.+|+    +..+...+...  .-..+  ...++ -..|..+.
T Consensus       127 i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A-~~~f~El~  205 (310)
T 3mv2_B          127 IDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTNAIEDTVSGDNEMILNLAESYIKFATNKETATSN-FYYYEELS  205 (310)
T ss_dssp             HTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHH-HHHHHHHH
T ss_pred             hccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCccccccchHHHHHHHHHHHHHHhCCccHHHH-HHHHHHHH
Confidence            34555  89999999999999999999999999999999994    23444444433  22222  22222 33566655


Q ss_pred             hccc
Q 034553           73 ARVT   76 (91)
Q Consensus        73 ~~~~   76 (91)
                      ...+
T Consensus       206 ~~~p  209 (310)
T 3mv2_B          206 QTFP  209 (310)
T ss_dssp             TTSC
T ss_pred             HhCC
Confidence            5543

>3ax2_A Mitochondrial import receptor subunit TOM20 homol; protein-protein complex, membrane protein-transport protein; 1.90A {Rattus norvegicus} PDB: 2v1s_A 3awr_A 2v1t_A 3ax5_A 3ax3_A

Probab=94.49  E-value=0.24  Score=26.66  Aligned_cols=39  Identities=10%  Similarity=0.050  Sum_probs=33.3

Q ss_pred             HHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHH
Q 034553           14 YRRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQKS   52 (91)
Q Consensus        14 ~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~~~~~l~~   52 (91)
                      ...|..+...|++++|..+|-+|+.+-|+-.++...+++
T Consensus        21 V~~GE~L~~~g~~~~~~~hf~nAl~Vc~qP~~LL~i~q~   59 (73)
T 3ax2_A           21 IQLGEELLAQGDYEKGVDHLTNAIAVCGQPQQLLQVLQQ   59 (73)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHHHHHHHH
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence            357889999999999999999999999998877665543

>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=94.11  E-value=0.14  Score=34.24  Aligned_cols=57  Identities=11%  Similarity=-0.034  Sum_probs=41.7

Q ss_pred             CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCC------CCHHHHHHHHHHHHHHHHHHHH
Q 034553            7 CHNVKALYRRAQVYMEIADLILAELDIKKAIEADP------QNREVKLLQKSLKQLQAESNKR   63 (91)
Q Consensus         7 p~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p------~~~~~~~~l~~~~~~~~~~~~~   63 (91)
                      +...+.+.++|.++...|+|++|+..++.++..-.      ...++...+.++....+...++
T Consensus       132 ~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A  194 (434)
T 4b4t_Q          132 FLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKS  194 (434)
T ss_dssp             SSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHH
Confidence            34567889999999999999999999999988622      2235666666666666655554

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2

Probab=94.10  E-value=0.24  Score=32.54  Aligned_cols=62  Identities=13%  Similarity=-0.004  Sum_probs=43.8

Q ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCC--------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 034553           11 KALYRRAQVYMEIADLILAELDIKKAIEADP--------QNREVKLLQKSLKQLQAESNKRDAKFYANMFA   73 (91)
Q Consensus        11 ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p--------~~~~~~~~l~~~~~~~~~~~~~~~~~~~~mf~   73 (91)
                      .+++.+|.++..+|++++|+..+++++++.+        ....+...+..+....++..++.. .+.+...
T Consensus        94 ~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~-~~~~al~  163 (373)
T 1hz4_A           94 WSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEA-SARSGIE  163 (373)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHH-HHHHHHH
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHH-HHHHHHH
Confidence            4578899999999999999999999999853        223455556666666666666543 3444443

>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A

Probab=93.95  E-value=0.38  Score=35.66  Aligned_cols=73  Identities=8%  Similarity=0.019  Sum_probs=57.6

Q ss_pred             cccccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH---HHHHHHHHHHHhhhcc
Q 034553            2 VLDCDCHNVKALYRRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQKSLKQLQAE---SNKRDAKFYANMFARV   75 (91)
Q Consensus         2 al~~~p~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~---~~~~~~~~~~~mf~~~   75 (91)
                      +|..||.+..+|.+........+.++.+...|++++...|....++......+...+.   .... ...|.+.....
T Consensus        58 ~l~~np~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~fP~~~~lW~~Yi~~E~~~~~~~~~~~v-~~lfeRal~~~  133 (679)
T 4e6h_A           58 MIEEQPTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDRFPLMANIWCMRLSLEFDKMEELDAAVI-EPVLARCLSKE  133 (679)
T ss_dssp             HHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTC--CCCHHHH-HHHHHHHTCSS
T ss_pred             HHHHCcCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhhCCcchHHHH-HHHHHHHHHhc
Confidence            4677999999999999999999999999999999999999999988887777666555   3332 33555555444

>2cfu_A SDSA1; SDS-hydrolase, lactamase, hydrolase; HET: 1DB; 1.9A {Pseudomonas aeruginosa} SCOP: d.106.1.3 d.157.1.13 PDB: 2cfz_A* 2cg2_A 2cg3_A*

Probab=93.79  E-value=0.33  Score=35.87  Aligned_cols=53  Identities=15%  Similarity=0.167  Sum_probs=47.6

Q ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH
Q 034553           10 VKALYRRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQKSLKQLQAESNK   62 (91)
Q Consensus        10 ~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~   62 (91)
                      ..+...+|+..+.-|+|.-|.+.++.++..+|+|.+++..+..+-..+....+
T Consensus       449 ~~~~~~~a~~~~~~g~~~wa~~l~~~~~~~~p~~~~a~~l~a~~~~~l~~~~~  501 (658)
T 2cfu_A          449 AERLLEQARASYARGEYRWVVEVVNRLVFAEPDNRAARELQADALEQLGYQAE  501 (658)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHCS
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHhcc
Confidence            45678899999999999999999999999999999999999999888877654

>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B

Probab=93.17  E-value=0.18  Score=35.63  Aligned_cols=48  Identities=15%  Similarity=0.135  Sum_probs=41.5

Q ss_pred             cccccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHH
Q 034553            2 VLDCDCHNVKALYRRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQ   50 (91)
Q Consensus         2 al~~~p~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~~~~~l   50 (91)
                      +|...|.+++.|+..+.-+...|+.+.|...|++|+.. |.+..+.-..
T Consensus       205 al~~~p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~-P~~~~l~~~y  252 (493)
T 2uy1_A          205 ILDSFYYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM-SDGMFLSLYY  252 (493)
T ss_dssp             HHHHTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CCSSHHHHHH
T ss_pred             HHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-CCcHHHHHHH
Confidence            45667999999999999999999999999999999999 9987555433

>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*

Probab=93.08  E-value=0.57  Score=32.18  Aligned_cols=54  Identities=9%  Similarity=-0.012  Sum_probs=43.7

Q ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
Q 034553           10 VKALYRRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQKSLKQLQAESNKR   63 (91)
Q Consensus        10 ~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~   63 (91)
                      ..+...++.++..+|++++|+..+..++..+|-+..+...+-.+....+...++
T Consensus       171 ~~a~~~~~~~~l~~g~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~A  224 (388)
T 2ff4_A          171 VLAHTAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDA  224 (388)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHH
Confidence            456677888899999999999999999999999998877776666655555444

>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1

Probab=92.89  E-value=0.84  Score=30.46  Aligned_cols=47  Identities=9%  Similarity=-0.014  Sum_probs=40.8

Q ss_pred             ccccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHH
Q 034553            3 LDCDCHNVKALYRRAQVYMEIADLILAELDIKKAIEADPQNREVKLL   49 (91)
Q Consensus         3 l~~~p~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~~~~~   49 (91)
                      |+-+|.+.+.-.-..+.++-.|+++.|..-++.+.+++|+....-..
T Consensus        24 VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~~a~~   70 (273)
T 1zbp_A           24 IKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQ   70 (273)
T ss_dssp             HHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHH
T ss_pred             HHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhHHHHH
Confidence            56789999999999999999999999999999999999987654433

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=92.56  E-value=0.52  Score=38.36  Aligned_cols=29  Identities=14%  Similarity=-0.057  Sum_probs=19.1

Q ss_pred             CCHHHHHHHHHHHHHhCCHHHHHHHHHHH
Q 034553            8 HNVKALYRRAQVYMEIADLILAELDIKKA   36 (91)
Q Consensus         8 ~~~ka~~rrg~a~~~lg~~~~A~~~~~~a   36 (91)
                      +.+.+|+..|.++...|++++|+..|.++
T Consensus      1103 n~p~vWsqLAKAql~~G~~kEAIdsYiKA 1131 (1630)
T 1xi4_A         1103 NEPAVWSQLAKAQLQKGMVKEAIDSYIKA 1131 (1630)
T ss_pred             CCHHHHHHHHHHHHhCCCHHHHHHHHHhc
Confidence            45666666666666666666666666554

>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}

Probab=92.55  E-value=0.23  Score=34.37  Aligned_cols=31  Identities=16%  Similarity=0.054  Sum_probs=13.8

Q ss_pred             CCCHHHHHHHHHH-H--HHhCCHHHHHHHHHHHH
Q 034553            7 CHNVKALYRRAQV-Y--MEIADLILAELDIKKAI   37 (91)
Q Consensus         7 p~~~ka~~rrg~a-~--~~lg~~~~A~~~~~~al   37 (91)
                      |+++.+++.+|.+ +  ...+++++|+..|+++.
T Consensus       245 ~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa  278 (452)
T 3e4b_A          245 PGYPASWVSLAQLLYDFPELGDVEQMMKYLDNGR  278 (452)
T ss_dssp             GGSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Confidence            4444444444444 2  23444444444444444

>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=92.48  E-value=0.41  Score=31.94  Aligned_cols=34  Identities=12%  Similarity=0.024  Sum_probs=28.7

Q ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCC
Q 034553           10 VKALYRRAQVYMEIADLILAELDIKKAIEADPQN   43 (91)
Q Consensus        10 ~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~   43 (91)
                      |.+.+..|..+...|+|++|++.|..+++.+|+.
T Consensus         4 p~~~l~~a~~l~~~~~y~eA~~~~~~~l~~~~~~   37 (434)
T 4b4t_Q            4 PGSKLEEARRLVNEKQYNEAEQVYLSLLDKDSSQ   37 (434)
T ss_dssp             TTHHHHHHHHHHHHTCHHHHHHHHHHHHHSCCCS
T ss_pred             hHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCccc
Confidence            4567778888999999999999999999988864

>1om2_A Protein (mitochondrial import receptor subunit TOM20); mitochondrial protein import across outer membrane, receptor for presequences; NMR {Rattus norvegicus} SCOP: a.23.4.1

Probab=92.46  E-value=0.38  Score=27.18  Aligned_cols=37  Identities=11%  Similarity=0.057  Sum_probs=31.2

Q ss_pred             HHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHH
Q 034553           15 RRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQK   51 (91)
Q Consensus        15 rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~~~~~l~   51 (91)
                      ..|..++..|+++.|+.+|-+|+.+-|+-.++...++
T Consensus        25 ~lGE~L~~~g~~e~av~Hf~nAl~Vc~qP~~LL~i~q   61 (95)
T 1om2_A           25 QLGEELLAQGDYEKGVDHLTNAIAVCGQPQQLLQVLQ   61 (95)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHHHHHHSCHHHHHHHHH
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            5788999999999999999999999998666555443

>2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1

Probab=91.50  E-value=0.55  Score=26.47  Aligned_cols=29  Identities=21%  Similarity=0.060  Sum_probs=24.0

Q ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Q 034553           10 VKALYRRAQVYMEIADLILAELDIKKAIE   38 (91)
Q Consensus        10 ~ka~~rrg~a~~~lg~~~~A~~~~~~al~   38 (91)
                      +-.+-||+.+++.-|.|++||+..+++..
T Consensus        15 AH~~~RrAe~ll~~gkydeAIech~kAa~   43 (97)
T 2crb_A           15 AHQQSRRADRLLAAGKYEEAISCHRKATT   43 (97)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             hhHhhhHHHHHHhcCCHHHHHHHHHHHHH
Confidence            45677999999999999999887766653

>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}

Probab=91.16  E-value=0.75  Score=28.52  Aligned_cols=54  Identities=13%  Similarity=0.064  Sum_probs=40.3

Q ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHC---CCCH----------------------HHHHHHHHHHHHHHHHHHH
Q 034553           10 VKALYRRAQVYMEIADLILAELDIKKAIEAD---PQNR----------------------EVKLLQKSLKQLQAESNKR   63 (91)
Q Consensus        10 ~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~---p~~~----------------------~~~~~l~~~~~~~~~~~~~   63 (91)
                      ..+++..|.+++..++|..|...|++||.+-   |.++                      +++-.+..|...+++..++
T Consensus        63 ~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s~~~~~~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~~~A  141 (167)
T 3ffl_A           63 YQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSKVRPSTGNSASTPQSQCLPSEIEVKYKLAECYTVLKQDKDA  141 (167)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC--------------------CCCCHHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCCccccccccCCCcccccccchHHHHHHHHHHHHHHCCHHHH
Confidence            4578999999999999999999999997752   2221                      5666677777777766554

>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}

Probab=90.80  E-value=0.18  Score=37.98  Aligned_cols=35  Identities=11%  Similarity=0.123  Sum_probs=23.4

Q ss_pred             cccccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHH
Q 034553            2 VLDCDCHNVKALYRRAQVYMEIADLILAELDIKKA   36 (91)
Q Consensus         2 al~~~p~~~ka~~rrg~a~~~lg~~~~A~~~~~~a   36 (91)
                      |+..-|...+.|++++.+|..+|+|+.|+-.++.+
T Consensus       363 AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNSc  397 (754)
T 4gns_B          363 STELALDSFESWYNLARCHIKKEEYEKALFAINSM  397 (754)
T ss_dssp             HHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred             HHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence            34455677777777777777777777777666654

>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3

Probab=90.59  E-value=0.62  Score=33.12  Aligned_cols=25  Identities=20%  Similarity=0.159  Sum_probs=22.2

Q ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHH
Q 034553           12 ALYRRAQVYMEIADLILAELDIKKA   36 (91)
Q Consensus        12 a~~rrg~a~~~lg~~~~A~~~~~~a   36 (91)
                      .|.++|.++.++|+|++|++.++++
T Consensus       150 n~~~LA~~L~~Lg~yq~AVea~~KA  174 (449)
T 1b89_A          150 NFGRLASTLVHLGEYQAAVDGARKA  174 (449)
T ss_dssp             CHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHhccHHHHHHHHHHc
Confidence            4678899999999999999999988

>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3

Probab=88.34  E-value=1.4  Score=31.29  Aligned_cols=48  Identities=8%  Similarity=-0.097  Sum_probs=40.0

Q ss_pred             HHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH
Q 034553           13 LYRRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQKSLKQLQAES   60 (91)
Q Consensus        13 ~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~   60 (91)
                      +......|...|.+++|+..++.++.++|....+...+..+..+.+-.
T Consensus       210 l~~lv~~Yek~G~~eEai~lLe~aL~le~ah~~~ftel~il~~ky~p~  257 (449)
T 1b89_A          210 LEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQ  257 (449)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHhcCHH
Confidence            445667889999999999999999999999999999987776655443

>4a5x_A MITD1, MIT domain-containing protein 1; protein transport, ESCRT, cytokinesis, midbody; HET: P15; 1.91A {Homo sapiens}

Probab=88.29  E-value=2  Score=23.49  Aligned_cols=35  Identities=17%  Similarity=0.100  Sum_probs=26.8

Q ss_pred             ccCCCHHH--HHHHHHHHHHhCCHHHHHHHHHHHHHH
Q 034553            5 CDCHNVKA--LYRRAQVYMEIADLILAELDIKKAIEA   39 (91)
Q Consensus         5 ~~p~~~ka--~~rrg~a~~~lg~~~~A~~~~~~al~l   39 (91)
                      .||...+|  +..+|.-.-..|+|++|+..|..|+++
T Consensus         9 ~~~~~~~A~~lv~~Ave~D~~g~y~eAl~lY~~Aie~   45 (86)
T 4a5x_A            9 MDPQSTAAATVLKRAVELDSESRYPQALVCYQEGIDL   45 (86)
T ss_dssp             --CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             CChHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            46665555  677788889999999999999988874

>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A

Probab=87.71  E-value=1.7  Score=26.72  Aligned_cols=40  Identities=15%  Similarity=-0.011  Sum_probs=31.7

Q ss_pred             cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHH
Q 034553            6 DCHNVKALYRRAQVYMEIADLILAELDIKKAIEADPQNRE   45 (91)
Q Consensus         6 ~p~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~   45 (91)
                      ...+++.|.-.|+-..+.|+...|...+.+|+.+.|...+
T Consensus        90 hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~  129 (161)
T 4h7y_A           90 CKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPLE  129 (161)
T ss_dssp             CTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHH
T ss_pred             hHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHH
Confidence            4456777778888888888888888888888888887654

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=87.44  E-value=1.5  Score=35.88  Aligned_cols=52  Identities=8%  Similarity=-0.078  Sum_probs=42.8

Q ss_pred             CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH
Q 034553            9 NVKALYRRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQKSLKQLQAES   60 (91)
Q Consensus         9 ~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~   60 (91)
                      +++-+...+..|...|.|++|+..|+.+|.++|.+..+..++..+..+.+-.
T Consensus      1279 ~~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~gmftELaiLyaKy~pe 1330 (1630)
T 1xi4_A         1279 HADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQ 1330 (1630)
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHhHHHHHHHHHHHhCCHH
Confidence            4555667788899999999999999999999999988888887776665443

>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1

Probab=87.22  E-value=1  Score=32.27  Aligned_cols=54  Identities=7%  Similarity=-0.116  Sum_probs=37.0

Q ss_pred             cccccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
Q 034553            2 VLDCDCHNVKALYRRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQKSLKQ   55 (91)
Q Consensus         2 al~~~p~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~   55 (91)
                      |+.++|++...|...|......|+.-+|+-.|.+++......+.+...|..+-.
T Consensus       178 A~~~~P~~G~~~nqLavla~~~~~~l~a~y~y~rsl~~~~Pf~~a~~nL~~~f~  231 (497)
T 1ya0_A          178 AAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALS  231 (497)
T ss_dssp             HHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHHH
T ss_pred             HHHhCCCCCchHHHHHHHHhcccccHHHHHHHHHHHhcCCCChhHHHHHHHHHH
Confidence            556777777777777777777777777777777777765555655555555444

>2w2u_A Hypothetical P60 katanin; hydrolase transport complex, nucleotide-binding, ESCRT, AAA-ATPase, cytokinesis, ATP-binding; 2.20A {Sulfolobus acidocaldarius}

Probab=86.77  E-value=2.5  Score=22.95  Aligned_cols=30  Identities=23%  Similarity=0.036  Sum_probs=24.4

Q ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Q 034553           10 VKALYRRAQVYMEIADLILAELDIKKAIEA   39 (91)
Q Consensus        10 ~ka~~rrg~a~~~lg~~~~A~~~~~~al~l   39 (91)
                      +..+..+|.-.-..|+|++|+..|..|++.
T Consensus        19 Ai~lv~~Ave~D~~g~y~eAl~lY~~aie~   48 (83)
T 2w2u_A           19 ARKYAINAVKADKEGNAEEAITNYKKAIEV   48 (83)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence            345778888899999999999888887774

>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A

Probab=86.14  E-value=1  Score=26.57  Aligned_cols=71  Identities=7%  Similarity=-0.017  Sum_probs=57.1

Q ss_pred             ccCCCHHHHHHHHHHHHHhCCHHH---HHHHHHHHHHHC-C-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccc
Q 034553            5 CDCHNVKALYRRAQVYMEIADLIL---AELDIKKAIEAD-P-QNREVKLLQKSLKQLQAESNKRDAKFYANMFARVT   76 (91)
Q Consensus         5 ~~p~~~ka~~rrg~a~~~lg~~~~---A~~~~~~al~l~-p-~~~~~~~~l~~~~~~~~~~~~~~~~~~~~mf~~~~   76 (91)
                      .++.+..+-|+.|.++.+.....+   ++..++..++-+ | ...+..-.|.....+++++.++. ..+..++..-+
T Consensus        30 ~~~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~-~~~~~lL~~eP  105 (126)
T 1nzn_A           30 AGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKAL-KYVRGLLQTEP  105 (126)
T ss_dssp             HSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHH-HHHHHHHHHCT
T ss_pred             cCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHH-HHHHHHHHhCC
Confidence            457889999999999999998888   898999888877 5 45688888899999999988873 45666665544

>2v6y_A AAA family ATPase, P60 katanin; MIT, VPS4, archaea, AAA-ATPase, ATP-binding, microtubule INT and trafficking domain, nucleotide-binding; HET: SRT; 2.40A {Sulfolobus solfataricus} PDB: 2v6y_B*

Probab=85.06  E-value=3.1  Score=22.47  Aligned_cols=30  Identities=23%  Similarity=-0.046  Sum_probs=24.4

Q ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Q 034553           10 VKALYRRAQVYMEIADLILAELDIKKAIEA   39 (91)
Q Consensus        10 ~ka~~rrg~a~~~lg~~~~A~~~~~~al~l   39 (91)
                      +.-+..+|.-.-..|+|++|+..|..+++.
T Consensus        11 Ai~lv~~Ave~D~~g~y~eAl~lY~~aie~   40 (83)
T 2v6y_A           11 ARKYAILAVKADKEGKVEDAITYYKKAIEV   40 (83)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence            345788898999999999999888887764

>3t5x_A PCI domain-containing protein 2; PCI, mRNA nuclear export, transcription; 2.12A {Homo sapiens}

Probab=84.79  E-value=2.6  Score=26.54  Aligned_cols=35  Identities=23%  Similarity=0.060  Sum_probs=31.1

Q ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCH
Q 034553           10 VKALYRRAQVYMEIADLILAELDIKKAIEADPQNR   44 (91)
Q Consensus        10 ~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~   44 (91)
                      +.-+|-.|..++..++|.+|.+++..|+...|.+.
T Consensus        14 v~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~~~~~~   48 (203)
T 3t5x_A           14 VTYKYYVGRKAMFDSDFKQAEEYLSFAFEHCHRSS   48 (203)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCTTC
T ss_pred             HHHHHHHHHHHHHHhCHHHHHHHHHHHHHHCCHhH
Confidence            45678899999999999999999999999988653

>2yhe_A SEC-alkyl sulfatase; hydrolase, inversion, metallo-beta-lactamase fold; 2.70A {Pseudomonas SP}

Probab=83.84  E-value=0.23  Score=36.89  Aligned_cols=61  Identities=18%  Similarity=0.266  Sum_probs=49.9

Q ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 034553           10 VKALYRRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQKSLKQLQAESNKRDAKFYANMF   72 (91)
Q Consensus        10 ~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~mf   72 (91)
                      ..+...+|...+..|+|.-|.+.++.++..+|+|.+++..+..+-..++...+  -..++++|
T Consensus       461 ~~~~~~~a~~~~~~g~~~wa~~l~~~~~~a~p~~~~ar~l~a~~~~~l~~~~~--~~~~rn~y  521 (668)
T 2yhe_A          461 ADAVLKQMRAAIDKGDYRWAVQLGNHLVFADPANKDARALQADAMEQLGYQTE--NALWRNMY  521 (668)
Confidence            35677788888999999999999999999999999999999888888877654  23445543

>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1

Probab=83.12  E-value=3.5  Score=27.46  Aligned_cols=49  Identities=16%  Similarity=0.165  Sum_probs=41.8

Q ss_pred             HHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 034553           18 QVYMEIADLILAELDIKKAIEADPQNREVKLLQKSLKQLQAESNKRDAK   66 (91)
Q Consensus        18 ~a~~~lg~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~~~   66 (91)
                      ..++..|++++|+..+...++-+|.|.+.+..+..+--..++..+++++
T Consensus         5 ~~ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~Q   53 (273)
T 1zbp_A            5 KNALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQ   53 (273)
T ss_dssp             HHHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred             HHHHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHH
Confidence            3567789999999999999999999999999998888777777776554

>2g0u_A Type III secretion system needle protein; helix-turn-helix, unknown function; NMR {Burkholderia pseudomallei} SCOP: a.2.20.1

Probab=82.51  E-value=4.7  Score=22.52  Aligned_cols=41  Identities=10%  Similarity=0.037  Sum_probs=28.2

Q ss_pred             CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 034553           25 DLILAELDIKKAIEADPQNREVKLLQKSLKQLQAESNKRDA   65 (91)
Q Consensus        25 ~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~~   65 (91)
                      ....++..-..+++.+|+|+.+...++..-....-....+-
T Consensus        31 ~~~~~l~~Al~~L~~~psNPa~LAe~Qa~lseynl~RNaQS   71 (92)
T 2g0u_A           31 DLNKQLQDAQANLTKNPSDPTALANYQMIMSEYNLYRNAQS   71 (92)
T ss_dssp             HHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence            45666666677778899999987777666555555555443

>2rpa_A Katanin P60 ATPase-containing subunit A1; AAA ATPase, ATP-binding, cell cycle, cell division, cytoplas hydrolase, microtubule; NMR {Mus musculus}

Probab=80.52  E-value=5  Score=21.62  Aligned_cols=50  Identities=10%  Similarity=0.045  Sum_probs=37.8

Q ss_pred             HHHHHHHHHHhCCHHHHHHHHHHHHHH------CCCCHHHHHHHHHHHHHHHHHHH
Q 034553           13 LYRRAQVYMEIADLILAELDIKKAIEA------DPQNREVKLLQKSLKQLQAESNK   62 (91)
Q Consensus        13 ~~rrg~a~~~lg~~~~A~~~~~~al~l------~p~~~~~~~~l~~~~~~~~~~~~   62 (91)
                      ...+|.=+..+|+|+.|+..|+.+++.      .=+|+..+.....+++.+.+.-+
T Consensus        15 ~~k~ARe~Al~GnYdta~~yY~g~~~qI~k~l~~~~d~~~r~kW~~~~~ei~~E~~   70 (78)
T 2rpa_A           15 NVKLAREYALLGNYDSAMVYYQGVLDQMNKYLYSVKDTHLRQKWQQVWQEINVEAK   70 (78)
T ss_dssp             HHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHhcCCHHHHHhHHHHHHHHHHHHH
Confidence            456788899999999999999998874      12466777777777777665543

>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}

Probab=80.29  E-value=5.7  Score=30.03  Aligned_cols=53  Identities=15%  Similarity=-0.056  Sum_probs=46.5

Q ss_pred             HHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 034553           13 LYRRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQKSLKQLQAESNKRDA   65 (91)
Q Consensus        13 ~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~~   65 (91)
                      +.-.+.-++..|+|+-|+..-++|..+.|.+-..+..|.++...+++++.+--
T Consensus       340 L~~Qa~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALL  392 (754)
T 4gns_B          340 LNIQTNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALF  392 (754)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHH
Confidence            34446667788999999999999999999999999999999999999988654

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	91
d1kt1a1	168	a.118.8.1 (A:254-421) FKBP51, C-terminal domain {M	7e-08
d1p5qa1	170	a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal d	2e-05
d1ihga1	169	a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos tau	9e-04
d2cfua2	505	d.157.1.13 (A:20-524) Alkylsulfatase SdsA1 {Pseudo	0.004

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} Length = 168

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

 Score = 45.3 bits (106), Expect = 7e-08
 Identities = 24/76 (31%), Positives = 41/76 (53%)

Query: 5   CDCHNVKALYRRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQKSLKQLQAESNKRD 64
            D  N K LYRR +  + + +   A+ D +K +E +PQN+  +L     ++   E N+RD
Sbjct: 93  LDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQIFMCQKKAKEHNERD 152

Query: 65  AKFYANMFARVTKDSS 80
            + YANMF +  +  +
Sbjct: 153 RRTYANMFKKFAEQDA 168

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 170

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.5 bits (88), Expect = 2e-05
 Identities = 23/74 (31%), Positives = 37/74 (50%)

Query: 5   CDCHNVKALYRRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQKSLKQLQAESNKRD 64
            D +N K L RR + ++ + D  LA  D +K ++  P N+  K      +Q       R+
Sbjct: 91  LDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLARE 150

Query: 65  AKFYANMFARVTKD 78
            K YANMF R+ ++
Sbjct: 151 KKLYANMFERLAEE 164

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} Length = 169

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 33.9 bits (76), Expect = 9e-04
 Identities = 20/64 (31%), Positives = 32/64 (50%)

Query: 5   CDCHNVKALYRRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQKSLKQLQAESNKRD 64
            D  N KALYRRAQ +  + +   A  D+KKA E  P+++ ++     +KQ       ++
Sbjct: 106 IDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDKE 165

Query: 65  AKFY 68
              Y
Sbjct: 166 KAAY 169

>d2cfua2 d.157.1.13 (A:20-524) Alkylsulfatase SdsA1 {Pseudomonas aeruginosa [TaxId: 287]} Length = 505

class: Alpha and beta proteins (a+b)
fold: Metallo-hydrolase/oxidoreductase
superfamily: Metallo-hydrolase/oxidoreductase
family: Alkylsulfatase-like
domain: Alkylsulfatase SdsA1
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 32.4 bits (73), Expect = 0.004
 Identities = 15/57 (26%), Positives = 27/57 (47%), Gaps = 6/57 (10%)

Query: 12  ALYRRAQVYMEIADLILA-ELDIKKAIEADPQNREVK-LLQKSLKQL--QAES-NKR 63
            L  +A+      +     E+ + + + A+P NR  + L   +L+QL  QAE+   R
Sbjct: 432 RLLEQARASYARGEYRWVVEV-VNRLVFAEPDNRAARELQADALEQLGYQAENAGWR 487

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	91
d1kt1a1	168	FKBP51, C-terminal domain {Monkey (Saimiri bolivie	99.69
d1p5qa1	170	FKBP52 (FKBP4), C-terminal domain {Human (Homo sap	99.67
d1ihga1	169	Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}	99.55
d2fbna1	153	Putative 70 kda peptidylprolyl isomerase PFL2275c	99.49
d1elwa_	117	Hop {Human (Homo sapiens) [TaxId: 9606]}	99.31
d1hxia_	112	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.28
d1a17a_	159	Protein phosphatase 5 {Human (Homo sapiens) [TaxId	99.26
d1elwa_	117	Hop {Human (Homo sapiens) [TaxId: 9606]}	99.23
d2c2la1	201	STIP1 homology and U box-containing protein 1, STU	99.21
d1a17a_	159	Protein phosphatase 5 {Human (Homo sapiens) [TaxId	99.16
d1xnfa_	259	Lipoprotein NlpI {Escherichia coli [TaxId: 562]}	99.16
d1nzna_	122	Mitochondria fission protein Fis1 {Human (Homo sap	99.12
d1zu2a1	145	Mitochondrial import receptor subunit tom20-3 {Tha	99.06
d2h6fa1	315	Protein farnesyltransferase alpha-subunit {Human (	99.04
d1tjca_	95	Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human	99.03
d1xnfa_	259	Lipoprotein NlpI {Escherichia coli [TaxId: 562]}	99.0
d1hh8a_	192	Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H	98.98
d1zu2a1	145	Mitochondrial import receptor subunit tom20-3 {Tha	98.97
d1elra_	128	Hop {Human (Homo sapiens) [TaxId: 9606]}	98.93
d1ihga1	169	Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}	98.93
d2h6fa1	315	Protein farnesyltransferase alpha-subunit {Human (	98.9
d2pqrb1	124	Mitochondria fission protein Fis1 {Baker's yeast (	98.88
d1fcha_	323	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	98.86
d1fcha_	323	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	98.84
d1w3ba_	388	O-GlcNAc transferase p110 subunit, OGT {Human (Hom	98.84
d1w3ba_	388	O-GlcNAc transferase p110 subunit, OGT {Human (Hom	98.82
d2fbna1	153	Putative 70 kda peptidylprolyl isomerase PFL2275c	98.75
d1tjca_	95	Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human	98.75
d1kt1a1	168	FKBP51, C-terminal domain {Monkey (Saimiri bolivie	98.71
d1p5qa1	170	FKBP52 (FKBP4), C-terminal domain {Human (Homo sap	98.71
d2c2la1	201	STIP1 homology and U box-containing protein 1, STU	98.69
d1hh8a_	192	Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H	98.68
d1hxia_	112	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	98.61
d1nzna_	122	Mitochondria fission protein Fis1 {Human (Homo sap	98.6
d1elra_	128	Hop {Human (Homo sapiens) [TaxId: 9606]}	98.53
d1zbpa1	264	Hypothetical protein VPA1032 {Vibrio parahaemolyti	98.4
d1dcea1	334	Rab geranylgeranyltransferase alpha-subunit, N-ter	98.17
d2hr2a1	156	Hypothetical protein CT2138 {Chlorobium tepidum [T	98.12
d1dcea1	334	Rab geranylgeranyltransferase alpha-subunit, N-ter	98.08
d2ff4a2	179	Probable regulatory protein EmbR, middle domain {M	98.05
d1ya0a1	497	SMG-7 {Human (Homo sapiens) [TaxId: 9606]}	98.0
d2hr2a1	156	Hypothetical protein CT2138 {Chlorobium tepidum [T	97.79
d1ya0a1	497	SMG-7 {Human (Homo sapiens) [TaxId: 9606]}	97.66
d2ff4a2	179	Probable regulatory protein EmbR, middle domain {M	97.57
d1hz4a_	366	Transcription factor MalT domain III {Escherichia	97.38
d1zbpa1	264	Hypothetical protein VPA1032 {Vibrio parahaemolyti	97.17
d2onda1	308	Cleavage stimulation factor 77 kDa subunit CSTF3 {	96.89
d1hz4a_	366	Transcription factor MalT domain III {Escherichia	96.81
d2onda1	308	Cleavage stimulation factor 77 kDa subunit CSTF3 {	96.7
d1ouva_	265	Cysteine rich protein C (HcpC) {Helicobacter pylor	96.53
d1qqea_	290	Vesicular transport protein sec17 {Baker's yeast (	94.59
d2cfua2	505	Alkylsulfatase SdsA1 {Pseudomonas aeruginosa [TaxI	94.44
d1qqea_	290	Vesicular transport protein sec17 {Baker's yeast (	93.75
d1ouva_	265	Cysteine rich protein C (HcpC) {Helicobacter pylor	92.2
d2pqrb1	124	Mitochondria fission protein Fis1 {Baker's yeast (	91.56
d1om2a_	95	Mitochondrial import receptor subunit Tom20 {Rat (	91.45
d2crba1	83	Nuclear receptor binding factor 2, NRBF2, N-termin	88.85
d1klxa_	133	Cysteine rich protein B (HcpB) {Helicobacter pylor	87.18
d1klxa_	133	Cysteine rich protein B (HcpB) {Helicobacter pylor	85.39
d1wfda_	93	Hypothetical protein 1500032H18Rik {Mouse (Mus mus	83.29
d1wr0a1	77	Vacuolar sorting protein 4b (VPS4B, SKD1 protein)	83.12

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=99.69  E-value=8.6e-17  Score=98.49  Aligned_cols=77  Identities=32%  Similarity=0.506  Sum_probs=73.2

Q ss_pred             cccccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCC
Q 034553            2 VLDCDCHNVKALYRRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQKSLKQLQAESNKRDAKFYANMFARVTKD   78 (91)
Q Consensus         2 al~~~p~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~mf~~~~~~   78 (91)
                      +|+++|+++++|+++|.++..+|+|++|+.+|+++++++|+|+++...+..+...+..+.+.++..+++||.+....
T Consensus        90 al~l~p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~~~~e~~kk~~~~~f~~~~~~  166 (168)
T d1kt1a1          90 ALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQIFMCQKKAKEHNERDRRTYANMFKKFAEQ  166 (168)
T ss_dssp             HHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             hhhcccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhhc
Confidence            68899999999999999999999999999999999999999999999999999999999999999999999987643

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.67  E-value=1.9e-16  Score=97.22  Aligned_cols=75  Identities=32%  Similarity=0.475  Sum_probs=72.4

Q ss_pred             cccccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccc
Q 034553            2 VLDCDCHNVKALYRRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQKSLKQLQAESNKRDAKFYANMFARVT   76 (91)
Q Consensus         2 al~~~p~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~mf~~~~   76 (91)
                      ||+++|+++++|+++|.++..+|+|++|+.+|+++++++|+|+.+...+..+...+.+..+.++..|++||+++.
T Consensus        88 al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~~~~~~e~~~~~~~f~~~~  162 (170)
T d1p5qa1          88 ALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAREKKLYANMFERLA  162 (170)
T ss_dssp             HHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhhccccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            688999999999999999999999999999999999999999999999999999999999999999999999875

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.55  E-value=6.9e-15  Score=89.64  Aligned_cols=66  Identities=30%  Similarity=0.382  Sum_probs=61.9

Q ss_pred             CcccccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 034553            1 MVLDCDCHNVKALYRRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQKSLKQLQAESNKRDAK   66 (91)
Q Consensus         1 ~al~~~p~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~~~   66 (91)
                      +||+++|+++++|+++|.+++.+|++++|+.+|+++++++|+|..+...+..+...++.+.+++++
T Consensus       102 ~al~~~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~p~n~~~~~~l~~~~~~l~~~~~~~k~  167 (169)
T d1ihga1         102 EALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDKEKA  167 (169)
T ss_dssp             HHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             hhhhhhhhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHh
Confidence            378999999999999999999999999999999999999999999999999999999988887653

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

Probab=99.49  E-value=4.6e-14  Score=85.08  Aligned_cols=60  Identities=28%  Similarity=0.272  Sum_probs=56.6

Q ss_pred             cccccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH
Q 034553            2 VLDCDCHNVKALYRRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQKSLKQLQAESN   61 (91)
Q Consensus         2 al~~~p~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~   61 (91)
                      ||+++|++++||+++|.++..+|++++|+.+|+++++++|+|.++...+..+..++++.+
T Consensus        93 al~~~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~kl~~~~  152 (153)
T d2fbna1          93 VLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNKLKEAR  152 (153)
T ss_dssp             HHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHH
T ss_pred             cccccchhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHC
Confidence            688999999999999999999999999999999999999999999999999988887653

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.31  E-value=5.3e-12  Score=72.74  Aligned_cols=84  Identities=13%  Similarity=0.108  Sum_probs=74.1

Q ss_pred             cccccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCchh
Q 034553            2 VLDCDCHNVKALYRRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQKSLKQLQAESNKRDAKFYANMFARVTKDSSV   81 (91)
Q Consensus         2 al~~~p~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~mf~~~~~~~~~   81 (91)
                      +|+++|+++.+|+.+|.++..+|++++|+.+|.++++++|++..+...+..+...++...++.. .+.+.....+....+
T Consensus        29 al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~-~~~~a~~~~p~~~~~  107 (117)
T d1elwa_          29 AIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNRFEEAKR-TYEEGLKHEANNPQL  107 (117)
T ss_dssp             HHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH-HHHHHHTTCTTCHHH
T ss_pred             HHhcCCcchhhhhcccccccccccccccchhhhhHHHhccchhhHHHHHHHHHHHccCHHHHHH-HHHHHHHhCCCCHHH
Confidence            6889999999999999999999999999999999999999999999999999999999988754 678888877766665


Q ss_pred             hhhhh
Q 034553           82 ATKVG   86 (91)
Q Consensus        82 ~~~~g   86 (91)
                      ...++
T Consensus       108 ~~~l~  112 (117)
T d1elwa_         108 KEGLQ  112 (117)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            55444

>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Trypanosoma brucei [TaxId: 5691]

Probab=99.28  E-value=2e-11  Score=69.82  Aligned_cols=69  Identities=16%  Similarity=0.006  Sum_probs=62.6

Q ss_pred             cccccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 034553            2 VLDCDCHNVKALYRRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQKSLKQLQAESNKRDAKFYANM   71 (91)
Q Consensus         2 al~~~p~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~m   71 (91)
                      +|+++|+++.+|+.+|.++..+|++++|+..|+++++++|++..+...+..+....+...++.. .++++
T Consensus        42 al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~la~~y~~~g~~~~A~~-~l~~~  110 (112)
T d1hxia_          42 VCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNANAALA-SLRAW  110 (112)
T ss_dssp             HHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHH-HHHHH
T ss_pred             hcccccccchhhhhhhhhhhhhhhHHHhhcccccccccccccccchHHHHHHHHHCCCHHHHHH-HHHHH
Confidence            6788999999999999999999999999999999999999999999999999999998888743 45543

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.26  E-value=1.3e-11  Score=73.97  Aligned_cols=61  Identities=15%  Similarity=0.042  Sum_probs=29.8

Q ss_pred             ccccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
Q 034553            3 LDCDCHNVKALYRRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQKSLKQLQAESNKR   63 (91)
Q Consensus         3 l~~~p~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~   63 (91)
                      |+++|+++.+|+.+|.+++.+|++++|+.+|+++++++|++..+...+..+...+++..++
T Consensus        37 l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~~~~a~~~~g~~~~~~g~~~eA   97 (159)
T d1a17a_          37 IELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRAA   97 (159)
T ss_dssp             HHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred             cccchhhhhhhhhhHHHHHhccccchHHHHHHHHHHHcccchHHHHHHHHHHHHcCCHHHH
Confidence            4444555555555555555555555555555555555555444444444444444444443

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.23  E-value=6.8e-12  Score=72.26  Aligned_cols=54  Identities=13%  Similarity=0.111  Sum_probs=51.4

Q ss_pred             cccccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
Q 034553            2 VLDCDCHNVKALYRRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQKSLKQ   55 (91)
Q Consensus         2 al~~~p~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~   55 (91)
                      +|+++|+++.+|+++|.++..+|++++|+..|+++++++|+++.+...+..++.
T Consensus        63 al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~l~~  116 (117)
T d1elwa_          63 TVDLKPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNMEA  116 (117)
T ss_dssp             HHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHH
T ss_pred             HHHhccchhhHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHhC
Confidence            678999999999999999999999999999999999999999999999988864

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.21  E-value=9.4e-12  Score=75.86  Aligned_cols=73  Identities=14%  Similarity=0.094  Sum_probs=64.7

Q ss_pred             CcccccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 034553            1 MVLDCDCHNVKALYRRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQKSLKQLQAESNKRDAKFYANMFAR   74 (91)
Q Consensus         1 ~al~~~p~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~mf~~   74 (91)
                      +||+++|.++.+|+.+|.++..+|+|++|+.+|++|++++|++..+...+..+...++.+.++.. .+++....
T Consensus        29 kal~~~p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~~~~a~~~lg~~~~~l~~~~~A~~-~~~~al~l  101 (201)
T d2c2la1          29 RAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQLEMESYDEAIA-NLQRAYSL  101 (201)
T ss_dssp             HHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHHTTCHHHHHH-HHHHHHHH
T ss_pred             HHHHhCCCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHH-HHHHHHHh
Confidence            36889999999999999999999999999999999999999999999999999999998888754 45555543

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.16  E-value=8.6e-11  Score=70.31  Aligned_cols=59  Identities=19%  Similarity=0.370  Sum_probs=54.1

Q ss_pred             CcccccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH
Q 034553            1 MVLDCDCHNVKALYRRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQKSLKQLQAE   59 (91)
Q Consensus         1 ~al~~~p~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~   59 (91)
                      ++|+++|+++++|+++|.+++.+|++++|+.+|++++.++|++..+...+..+...++.
T Consensus        69 kal~~~p~~~~a~~~~g~~~~~~g~~~eA~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~  127 (159)
T d1a17a_          69 RAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQ  127 (159)
T ss_dssp             HHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHcccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHH
Confidence            36889999999999999999999999999999999999999999999888888766554

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

Probab=99.16  E-value=5e-11  Score=74.82  Aligned_cols=74  Identities=8%  Similarity=-0.017  Sum_probs=58.3

Q ss_pred             cccccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccc
Q 034553            2 VLDCDCHNVKALYRRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQKSLKQLQAESNKRDAKFYANMFARVT   76 (91)
Q Consensus         2 al~~~p~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~mf~~~~   76 (91)
                      +|+++|+++.+|+.+|.++..+|++++|+..|+++++++|++..+...+..+...+++..++. ..+.+.....+
T Consensus        63 al~l~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~-~~~~~al~~~p  136 (259)
T d1xnfa_          63 ALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQ-DDLLAFYQDDP  136 (259)
T ss_dssp             HHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHH-HHHHHHHHHCT
T ss_pred             hhccCCCCHHHHhhhchHHHHHHHHHHhhhhhhHHHHHHhhhhhhHHHHHHHHHHHhhHHHHH-HHHHHHHhhcc
Confidence            677888888888888888888888888888888888888888888888888877777766653 34555555543

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.12  E-value=1.4e-10  Score=67.61  Aligned_cols=58  Identities=14%  Similarity=0.187  Sum_probs=47.5

Q ss_pred             cccccCCC--HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH
Q 034553            2 VLDCDCHN--VKALYRRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQKSLKQLQAE   59 (91)
Q Consensus         2 al~~~p~~--~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~   59 (91)
                      +|..+|.+  +.+||.+|.++..+|+|++|+..|+++++++|+|..+...+..+..+++.
T Consensus        62 ~l~~~~~~~~~~~~~~Lg~~y~~~g~~~~A~~~~~~aL~~~P~~~~A~~l~~~I~~~~~k  121 (122)
T d1nzna_          62 LLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAKELERLIDKAMKK  121 (122)
T ss_dssp             HTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHH
T ss_pred             HHhccCCchHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHHcC
Confidence            45566654  55899999999999999999999999999999999988888888776653

>d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondrial import receptor subunit tom20-3
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.06  E-value=1.8e-10  Score=68.61  Aligned_cols=65  Identities=15%  Similarity=0.088  Sum_probs=57.3

Q ss_pred             CcccccCCCHHHHHHHHHHHHHhCC-----------HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 034553            1 MVLDCDCHNVKALYRRAQVYMEIAD-----------LILAELDIKKAIEADPQNREVKLLQKSLKQLQAESNKRDA   65 (91)
Q Consensus         1 ~al~~~p~~~ka~~rrg~a~~~lg~-----------~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~~   65 (91)
                      +||+++|+++.+|+.+|.++..+|+           |+.|+..|+++++++|++..++..|..+.+..+.+.+..+
T Consensus        66 kAl~l~P~~~~a~~~lG~~y~~~g~~~~~~~~~~~~~~~A~~~~~kal~l~P~~~~~~~~L~~~~ka~~~~~e~~k  141 (145)
T d1zu2a1          66 EALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKSLEMTAKAPQLHAEAYK  141 (145)
T ss_dssp             HHHHHCTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTHHHHHHHHHH
T ss_pred             HHHHhcchhhHHHhhHHHHHHHcccchhhHHHHHHhHHHhhhhhhcccccCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3789999999999999999988764           7999999999999999999999999999888777666443

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.04  E-value=1.8e-10  Score=75.87  Aligned_cols=86  Identities=16%  Similarity=0.199  Sum_probs=69.7

Q ss_pred             cccccCCCHHHHHHHHHHHHHhC-CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCch
Q 034553            2 VLDCDCHNVKALYRRAQVYMEIA-DLILAELDIKKAIEADPQNREVKLLQKSLKQLQAESNKRDAKFYANMFARVTKDSS   80 (91)
Q Consensus         2 al~~~p~~~ka~~rrg~a~~~lg-~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~mf~~~~~~~~   80 (91)
                      ||+++|++..||+.||.++..+| ++++|+..++++++++|++..+...++.+...++...++ ...+.+++...+...+
T Consensus        69 ai~lnP~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~p~~~~a~~~~~~~~~~l~~~~eA-l~~~~kal~~dp~n~~  147 (315)
T d2h6fa1          69 AIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQE-LEFIADILNQDAKNYH  147 (315)
T ss_dssp             HHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTH-HHHHHHHHHHCTTCHH
T ss_pred             HHHHCCCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHhhhhHHHHHhHHHHhhccHHHH-HHHHhhhhhhhhcchH
Confidence            67888999999999998888887 488899999999999998888888888888888777766 3567888877777777


Q ss_pred             hhhhhhhc
Q 034553           81 VATKVGYF   88 (91)
Q Consensus        81 ~~~~~g~f   88 (91)
                      ...+.|+.
T Consensus       148 a~~~~~~~  155 (315)
T d2h6fa1         148 AWQHRQWV  155 (315)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            77766653

>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.03  E-value=3.8e-10  Score=62.76  Aligned_cols=51  Identities=25%  Similarity=0.189  Sum_probs=46.4

Q ss_pred             CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
Q 034553            8 HNVKALYRRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQKSLKQLQA   58 (91)
Q Consensus         8 ~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~   58 (91)
                      +.+.+|+.+|.++..+|++++|+..|+++|+++|+++.+...+..+++.+.
T Consensus        44 ~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~P~~~~a~~Nl~~~~~~l~   94 (95)
T d1tjca_          44 DKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANGNLKYFEYIMA   94 (95)
T ss_dssp             CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhC
Confidence            347889999999999999999999999999999999999999988877654

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

Probab=99.00  E-value=5.2e-10  Score=70.05  Aligned_cols=82  Identities=16%  Similarity=0.137  Sum_probs=71.0

Q ss_pred             ccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCchhhhh
Q 034553            5 CDCHNVKALYRRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQKSLKQLQAESNKRDAKFYANMFARVTKDSSVATK   84 (91)
Q Consensus         5 ~~p~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~mf~~~~~~~~~~~~   84 (91)
                      .+|..+.+||.+|.++..+|++++|+..|+++++++|++..+...+..+....+...++. ..+.+.....+....+..+
T Consensus        32 ~~~~~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~g~~~~A~-~~~~~al~~~p~~~~a~~~  110 (259)
T d1xnfa_          32 TDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAY-EAFDSVLELDPTYNYAHLN  110 (259)
T ss_dssp             CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHH-HHHHHHHHHCTTCTHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCCHHHHhhhchHHHHHHHHHHhh-hhhhHHHHHHhhhhhhHHH
Confidence            356778899999999999999999999999999999999999999999999999988875 4678888877766666666


Q ss_pred             hhh
Q 034553           85 VGY   87 (91)
Q Consensus        85 ~g~   87 (91)
                      .|.
T Consensus       111 lg~  113 (259)
T d1xnfa_         111 RGI  113 (259)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            654

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.98  E-value=2.2e-09  Score=66.22  Aligned_cols=68  Identities=9%  Similarity=0.042  Sum_probs=60.6

Q ss_pred             ccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 034553            5 CDCHNVKALYRRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQKSLKQLQAESNKRDAKFYANMFA   73 (91)
Q Consensus         5 ~~p~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~mf~   73 (91)
                      +.|.++++|+.+|.++..+|++++|+.+|++|++++|++..+...+..+...++++.++.. .+.+.+.
T Consensus        31 i~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ldp~~~~a~~~~g~~~~~~g~~~~A~~-~~~kAl~   98 (192)
T d1hh8a_          31 VQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKYDLAIK-DLKEALI   98 (192)
T ss_dssp             SSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH-HHHHHHH
T ss_pred             cCCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhhhhhHHHHHHHHHhhccHHHHHH-HHHHHHH
Confidence            5677899999999999999999999999999999999999999999999999999888754 3555443

>d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondrial import receptor subunit tom20-3
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=98.97  E-value=2.2e-09  Score=63.74  Aligned_cols=58  Identities=17%  Similarity=0.111  Sum_probs=51.3

Q ss_pred             cccccCCCHHHHHHHHHHHHHh----------CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH
Q 034553            2 VLDCDCHNVKALYRRAQVYMEI----------ADLILAELDIKKAIEADPQNREVKLLQKSLKQLQAE   59 (91)
Q Consensus         2 al~~~p~~~ka~~rrg~a~~~l----------g~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~   59 (91)
                      ||+++|+++.+++++|.++..+          +.+++|+..|+++++++|++..+...+..+...++.
T Consensus        23 al~~~P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~P~~~~a~~~lG~~y~~~g~   90 (145)
T d1zu2a1          23 TYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSFAF   90 (145)
T ss_dssp             HHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHH
T ss_pred             HHhhCCcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhcchhhHHHhhHHHHHHHccc
Confidence            6889999999999999999865          556899999999999999999999999888776643

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.93  E-value=3.6e-10  Score=65.70  Aligned_cols=58  Identities=24%  Similarity=0.155  Sum_probs=48.1

Q ss_pred             cccccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH
Q 034553            2 VLDCDCHNVKALYRRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQKSLKQLQAE   59 (91)
Q Consensus         2 al~~~p~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~   59 (91)
                      +|+++|+++.+++.+|.++..+|+|++|+.+|+++++++|++..+...+..+...++.
T Consensus        30 al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~~lg~   87 (128)
T d1elra_          30 AKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIGN   87 (128)
T ss_dssp             HHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH
T ss_pred             HHHhCcccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHHH
Confidence            6889999999999999999999999999999999999999887655555544444443

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

Probab=98.93  E-value=1.4e-09  Score=65.46  Aligned_cols=82  Identities=12%  Similarity=0.039  Sum_probs=70.3

Q ss_pred             ccccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCchhh
Q 034553            3 LDCDCHNVKALYRRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQKSLKQLQAESNKRDAKFYANMFARVTKDSSVA   82 (91)
Q Consensus         3 l~~~p~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~mf~~~~~~~~~~   82 (91)
                      +.++|.++.+|..+|.++..+|+|++|+.+|+++++++|++..+...+..+...+++..++. ..+++.....+....+.
T Consensus        70 ~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~l~~~~~A~-~~~~~al~l~p~n~~~~  148 (169)
T d1ihga1          70 AKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQAL-ADLKKAQEIAPEDKAIQ  148 (169)
T ss_dssp             GGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHH-HHHHHHHHHCTTCHHHH
T ss_pred             HHhChhhHHHHHHHHHHHHhhcccchhhhhhhhhhhhhhhhhhHHHhHHHHHHHccCHHHHH-HHHHHHHHhCCCCHHHH
Confidence            35678889999999999999999999999999999999999999999999999999988874 46788887766655554


Q ss_pred             hhh
Q 034553           83 TKV   85 (91)
Q Consensus        83 ~~~   85 (91)
                      ..+
T Consensus       149 ~~l  151 (169)
T d1ihga1         149 AEL  151 (169)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            443

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.90  E-value=5.9e-10  Score=73.32  Aligned_cols=77  Identities=9%  Similarity=0.041  Sum_probs=48.5

Q ss_pred             cccccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCc
Q 034553            2 VLDCDCHNVKALYRRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQKSLKQLQAESNKRDAKFYANMFARVTKDS   79 (91)
Q Consensus         2 al~~~p~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~mf~~~~~~~   79 (91)
                      +|+++|++..+|+.||.++..+|++++|+..++++++++|++..+...+..+...++...++ ...+.++....+...
T Consensus       104 al~~~p~~~~a~~~~~~~~~~l~~~~eAl~~~~kal~~dp~n~~a~~~~~~~~~~~~~~~~A-l~~~~~al~~~p~n~  180 (315)
T d2h6fa1         104 IIEEQPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNE-LQYVDQLLKEDVRNN  180 (315)
T ss_dssp             HHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTH-HHHHHHHHHHCTTCH
T ss_pred             HHHHHHhhhhHHHHHhHHHHhhccHHHHHHHHhhhhhhhhcchHHHHHHHHHHHHHHhhHHH-HHHHHHHHHHCCccH
Confidence            45666777777777777777777777777777777777777776666666666666555544 234555555444333

>d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.88  E-value=4.9e-09  Score=61.38  Aligned_cols=57  Identities=12%  Similarity=0.157  Sum_probs=50.7

Q ss_pred             ccccCCC-HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH
Q 034553            3 LDCDCHN-VKALYRRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQKSLKQLQAE   59 (91)
Q Consensus         3 l~~~p~~-~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~   59 (91)
                      ++.+|.+ ..++|.+|.+++.+|+|+.|+..++++|+++|+|..+......++.++..
T Consensus        65 ~~~~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ieP~n~qA~~L~~~Ie~~~~k  122 (124)
T d2pqrb1          65 YKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGALKSMVEDKIQK  122 (124)
T ss_dssp             HHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHH
T ss_pred             HhcCchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHHhc
Confidence            4457765 58999999999999999999999999999999999999998888877754

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.86  E-value=4.7e-09  Score=67.44  Aligned_cols=74  Identities=7%  Similarity=-0.053  Sum_probs=63.9

Q ss_pred             cccccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccc
Q 034553            2 VLDCDCHNVKALYRRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQKSLKQLQAESNKRDAKFYANMFARVT   76 (91)
Q Consensus         2 al~~~p~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~mf~~~~   76 (91)
                      ++..+|+++.+|+.+|.++..+|++++|+..|+++++++|++..+...+..+...+++..++. ..|.+..+..+
T Consensus       198 al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~-~~~~~al~l~p  271 (323)
T d1fcha_         198 ALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAV-EHFLEALNMQR  271 (323)
T ss_dssp             HHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHH-HHHHHHHHHHH
T ss_pred             ccccccccccchhhhhhcccccccchhHHHHHHHHHHHhhccHHHHHHHHHHHHHCCCHHHHH-HHHHHHHHhCC
Confidence            567899999999999999999999999999999999999999999999999999998887763 35666655443

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.84  E-value=8.1e-09  Score=66.30  Aligned_cols=74  Identities=11%  Similarity=0.095  Sum_probs=62.5

Q ss_pred             cccccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccc
Q 034553            2 VLDCDCHNVKALYRRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQKSLKQLQAESNKRDAKFYANMFARVT   76 (91)
Q Consensus         2 al~~~p~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~mf~~~~   76 (91)
                      +|+.+|+++.+|+.+|.++..+|++++|+..|.++++++|++..+...+..+....+...++. ..+..++...+
T Consensus        45 al~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~-~~~~~~~~~~~  118 (323)
T d1fcha_          45 AVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQAC-EILRDWLRYTP  118 (323)
T ss_dssp             HHHSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH-HHHHHHHHTST
T ss_pred             HHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHhhhccccccccccccccccccccccccccc-cchhhHHHhcc
Confidence            678999999999999999999999999999999999999999999988888887777776653 34555554433

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.84  E-value=1.6e-09  Score=69.66  Aligned_cols=84  Identities=17%  Similarity=0.067  Sum_probs=54.6

Q ss_pred             ccccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCchhh
Q 034553            3 LDCDCHNVKALYRRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQKSLKQLQAESNKRDAKFYANMFARVTKDSSVA   82 (91)
Q Consensus         3 l~~~p~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~mf~~~~~~~~~~   82 (91)
                      +...|.+..+++.+|.++..+|++++|+..|+++++++|++..+...+..+....++..++. ..+.+.....+...+..
T Consensus       298 ~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~-~~~~~al~l~P~~~~a~  376 (388)
T d1w3ba_         298 LRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEAL-MHYKEAIRISPTFADAY  376 (388)
T ss_dssp             HHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHH-HHHHHHHTTCTTCHHHH
T ss_pred             hccCCccchhhhHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHH-HHHHHHHHhCCCCHHHH
Confidence            44566677777777777777777777777777777777777777766766666666665553 34566666555555555


Q ss_pred             hhhhh
Q 034553           83 TKVGY   87 (91)
Q Consensus        83 ~~~g~   87 (91)
                      .++|.
T Consensus       377 ~~lg~  381 (388)
T d1w3ba_         377 SNMGN  381 (388)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            55553

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.82  E-value=1e-08  Score=65.76  Aligned_cols=71  Identities=11%  Similarity=0.032  Sum_probs=61.4

Q ss_pred             cccccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 034553            2 VLDCDCHNVKALYRRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQKSLKQLQAESNKRDAKFYANMFA   73 (91)
Q Consensus         2 al~~~p~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~mf~   73 (91)
                      +++.+|+++.+++.+|.++..+|++++|+..|+++++++|++..+...+..+....++..++.. .+..+..
T Consensus        25 ~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~g~~~~A~~-~~~~~~~   95 (388)
T d1w3ba_          25 LWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEAIE-HYRHALR   95 (388)
T ss_dssp             HHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHH-HHHHHHH
T ss_pred             HHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHhhhhcccccccc-ccccccc
Confidence            5778999999999999999999999999999999999999999999999999888887776533 3444443

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

Probab=98.75  E-value=4.7e-08  Score=58.02  Aligned_cols=76  Identities=9%  Similarity=-0.031  Sum_probs=65.4

Q ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCchhhhhhh
Q 034553           10 VKALYRRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQKSLKQLQAESNKRDAKFYANMFARVTKDSSVATKVG   86 (91)
Q Consensus        10 ~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~mf~~~~~~~~~~~~~g   86 (91)
                      ...|..+|.+++.+|++++|+.+++++++++|++..+...+..+...++...++. ..+.+.....+...++.+.++
T Consensus        67 ~~~~~Nla~~~~~l~~~~~Al~~~~~al~~~p~~~ka~~~~g~~~~~lg~~~~A~-~~~~~al~l~P~n~~~~~~l~  142 (153)
T d2fbna1          67 ISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAK-ENLYKAASLNPNNLDIRNSYE  142 (153)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHH-HHHHHHHHHSTTCHHHHHHHH
T ss_pred             HHHHhhHHHHHHHhcccchhhhhhhccccccchhhhhhHHhHHHHHHcCCHHHHH-HHHHHHHHhCCCCHHHHHHHH
Confidence            3578899999999999999999999999999999999999999999999998874 467887877776666655554

>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.75  E-value=2.4e-08  Score=55.18  Aligned_cols=79  Identities=14%  Similarity=0.102  Sum_probs=68.3

Q ss_pred             CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCC-------HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCchh
Q 034553            9 NVKALYRRAQVYMEIADLILAELDIKKAIEADPQN-------REVKLLQKSLKQLQAESNKRDAKFYANMFARVTKDSSV   81 (91)
Q Consensus         9 ~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~-------~~~~~~l~~~~~~~~~~~~~~~~~~~~mf~~~~~~~~~   81 (91)
                      ++.-+|..|.+++..|+|+.|+..|++|+++.|.+       .++...+..+...+++..++. ..+++++...+....+
T Consensus         4 saddc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~-~~y~~aL~l~P~~~~a   82 (95)
T d1tjca_           4 TAEDSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKAL-LLTKKLLELDPEHQRA   82 (95)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHH-HHHHHHHHHCTTCHHH
T ss_pred             cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHH-HHHHHHHHhCcCCHHH
Confidence            35678999999999999999999999999997654       468888999999999988874 4789999998888888


Q ss_pred             hhhhhhc
Q 034553           82 ATKVGYF   88 (91)
Q Consensus        82 ~~~~g~f   88 (91)
                      .++++++
T Consensus        83 ~~Nl~~~   89 (95)
T d1tjca_          83 NGNLKYF   89 (95)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            8888875

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=98.71  E-value=6e-08  Score=58.25  Aligned_cols=76  Identities=13%  Similarity=0.133  Sum_probs=64.7

Q ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCchhhhhhh
Q 034553           10 VKALYRRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQKSLKQLQAESNKRDAKFYANMFARVTKDSSVATKVG   86 (91)
Q Consensus        10 ~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~mf~~~~~~~~~~~~~g   86 (91)
                      ...|..+|.+++.+|+|++|+.+++++++++|++..+...+..+...++++.++.. .+.+.....+....+...++
T Consensus        64 ~~~~~Nla~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~~~~~~~l~~~~~A~~-~~~~al~l~P~n~~~~~~l~  139 (168)
T d1kt1a1          64 LAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKG-DFEKVLEVNPQNKAARLQIF  139 (168)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH-HHHHHHHSCTTCHHHHHHHH
T ss_pred             HHHHHhHHHHHHHhhhcccchhhhhhhhhcccchHHHHHHHHHHHHHcCCHHHHHH-HHHHHHHhCCCCHHHHHHHH
Confidence            45678899999999999999999999999999999999999999999999988754 67888877766655555544

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.71  E-value=6.1e-08  Score=58.42  Aligned_cols=75  Identities=11%  Similarity=0.076  Sum_probs=63.8

Q ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCchhhhhh
Q 034553           10 VKALYRRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQKSLKQLQAESNKRDAKFYANMFARVTKDSSVATKV   85 (91)
Q Consensus        10 ~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~mf~~~~~~~~~~~~~   85 (91)
                      ..+|..+|.+++.+|+|++|+.+++++++++|++..+...+..+...++.+.++. ..+++.....+....+.+.+
T Consensus        62 ~~~~~nla~~y~k~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~-~~~~~al~l~P~n~~~~~~l  136 (170)
T d1p5qa1          62 LASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELAR-ADFQKVLQLYPNNKAAKTQL  136 (170)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH-HHHHHHHHHCSSCHHHHHHH
T ss_pred             HHHHHHHHHHHHhhhhcccccchhhhhhhccccchhhhHHHHHHHHHhhhHHHHH-HHHHHHHHhCCCCHHHHHHH
Confidence            4678889999999999999999999999999999999999999999999998874 46788877766555554433

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.69  E-value=8.9e-08  Score=57.64  Aligned_cols=78  Identities=8%  Similarity=-0.092  Sum_probs=65.9

Q ss_pred             CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCchhhhhhh
Q 034553            8 HNVKALYRRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQKSLKQLQAESNKRDAKFYANMFARVTKDSSVATKVG   86 (91)
Q Consensus         8 ~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~mf~~~~~~~~~~~~~g   86 (91)
                      .++..+...|..++..|+|++|+..|++|++++|++..+...+..+...++.+.++. ..+.+.....+.......++|
T Consensus         2 ~~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~p~~~~~~~~lg~~y~~~~~~~~Ai-~~~~~al~l~p~~~~a~~~lg   79 (201)
T d2c2la1           2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQAL-ADCRRALELDGQSVKAHFFLG   79 (201)
T ss_dssp             CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHH-HHHHHHTTSCTTCHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHhhhhhhhhhh-HHHHHHHHhCCCcHHHHHHHH
Confidence            357788899999999999999999999999999999999999999999999998874 467888777665544444444

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.68  E-value=4.6e-08  Score=60.09  Aligned_cols=64  Identities=23%  Similarity=0.221  Sum_probs=52.5

Q ss_pred             CcccccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCH----------------HHHHHHHHHHHHHHHHHHHH
Q 034553            1 MVLDCDCHNVKALYRRAQVYMEIADLILAELDIKKAIEADPQNR----------------EVKLLQKSLKQLQAESNKRD   64 (91)
Q Consensus         1 ~al~~~p~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~----------------~~~~~l~~~~~~~~~~~~~~   64 (91)
                      +||++||+++.+|+.+|.++..+|++++|+.+|++++...|.+.                ++...+..+...+++..++.
T Consensus        61 kAl~ldp~~~~a~~~~g~~~~~~g~~~~A~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~  140 (192)
T d1hh8a_          61 RSINRDKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAE  140 (192)
T ss_dssp             HHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHhhhhhhhHHHHHHHHHhhccHHHHHHHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHH
Confidence            47899999999999999999999999999999999999876542                44556666666666666653

>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Trypanosoma brucei [TaxId: 5691]

Probab=98.61  E-value=1.6e-07  Score=52.95  Aligned_cols=75  Identities=12%  Similarity=0.068  Sum_probs=64.4

Q ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCchhhhhhh
Q 034553           11 KALYRRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQKSLKQLQAESNKRDAKFYANMFARVTKDSSVATKVG   86 (91)
Q Consensus        11 ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~mf~~~~~~~~~~~~~g   86 (91)
                      ..++..|.+++..|++++|+..|+++++++|++..+...+..+...+++..++.. .+++.....+........+|
T Consensus        17 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~-~~~~al~~~p~~~~a~~~la   91 (112)
T d1hxia_          17 ENPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAII-ALNHARMLDPKDIAVHAALA   91 (112)
T ss_dssp             SCHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHH-HHHHHHHHCTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHHhhhcccccccchhhhhhhhhhhhhhhHHHhhc-ccccccccccccccchHHHH
Confidence            4578999999999999999999999999999999999999999999999888754 67888887766655554444

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.60  E-value=1.2e-08  Score=59.10  Aligned_cols=82  Identities=6%  Similarity=0.033  Sum_probs=67.9

Q ss_pred             cccccCCCHHHHHHHHHHHHHh---CCHHHHHHHHHHHHHHCCCCH--HHHHHHHHHHHHHHHHHHHHHHHHHHhhhccc
Q 034553            2 VLDCDCHNVKALYRRAQVYMEI---ADLILAELDIKKAIEADPQNR--EVKLLQKSLKQLQAESNKRDAKFYANMFARVT   76 (91)
Q Consensus         2 al~~~p~~~ka~~rrg~a~~~l---g~~~~A~~~~~~al~l~p~~~--~~~~~l~~~~~~~~~~~~~~~~~~~~mf~~~~   76 (91)
                      +|.++|+++.++|+.|.+++..   +++++|+..|++++..+|++.  ++...+..+...++++.++. ..+.+++...+
T Consensus        25 aL~~~p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~y~~~g~~~~A~-~~~~~aL~~~P  103 (122)
T d1nzna_          25 EKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKAL-KYVRGLLQTEP  103 (122)
T ss_dssp             HHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHH-HHHHHHHHHCT
T ss_pred             HHhhCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHHhhhHHHH-HHHHHHHHhCc
Confidence            6889999999999999999874   456679999999999998764  57888999999999998885 47888888877


Q ss_pred             CCchhhhh
Q 034553           77 KDSSVATK   84 (91)
Q Consensus        77 ~~~~~~~~   84 (91)
                      ......+.
T Consensus       104 ~~~~A~~l  111 (122)
T d1nzna_         104 QNNQAKEL  111 (122)
T ss_dssp             TCHHHHHH
T ss_pred             CCHHHHHH
Confidence            65554443

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.53  E-value=3.2e-07  Score=52.77  Aligned_cols=67  Identities=16%  Similarity=0.007  Sum_probs=56.4

Q ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccC
Q 034553           10 VKALYRRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQKSLKQLQAESNKRDAKFYANMFARVTK   77 (91)
Q Consensus        10 ~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~mf~~~~~   77 (91)
                      ..++-..|.+++..|+|++|+..|+++++++|++..+...+..+...++++.++.. .+.++....+.
T Consensus         4 a~~~k~~G~~~~~~~~y~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~-~~~~al~l~~~   70 (128)
T d1elra_           4 ALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRE-LCEKAIEVGRE   70 (128)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHH-HHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHhHHHHHHHcCchHHHHH-HHHHHHHhCcc
Confidence            35677899999999999999999999999999999999999999999999888744 45555544433

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]}

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

Probab=98.40  E-value=5.3e-07  Score=58.19  Aligned_cols=56  Identities=9%  Similarity=0.008  Sum_probs=50.3

Q ss_pred             cccccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
Q 034553            2 VLDCDCHNVKALYRRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQKSLKQLQ   57 (91)
Q Consensus         2 al~~~p~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~   57 (91)
                      +|+.+|+++.++..+|.+++..|++++|+..|+++++++|++..+...+..+....
T Consensus        22 al~~~P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~P~~~~~~~~l~~ll~a~   77 (264)
T d1zbpa1          22 AIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKAA   77 (264)
T ss_dssp             HHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHH
T ss_pred             HHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhc
Confidence            67899999999999999999999999999999999999999998877776665433

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.17  E-value=1e-06  Score=57.03  Aligned_cols=54  Identities=6%  Similarity=-0.206  Sum_probs=47.9

Q ss_pred             cccccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
Q 034553            2 VLDCDCHNVKALYRRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQKSLKQ   55 (91)
Q Consensus         2 al~~~p~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~   55 (91)
                      ++..+|.+..+|+.+|.++..+|++++|+..|++++++||.+......|...-.
T Consensus       268 ~~~~~p~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~ldP~~~~y~~~L~~~~~  321 (334)
T d1dcea1         268 LEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKFL  321 (334)
T ss_dssp             HCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHHHHHHHHH
T ss_pred             HHhhCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCcccHHHHHHHHHHHh
Confidence            577899999999999999999999999999999999999998887776654443

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

Probab=98.12  E-value=3.7e-07  Score=53.96  Aligned_cols=38  Identities=21%  Similarity=0.179  Sum_probs=33.4

Q ss_pred             CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHH
Q 034553            8 HNVKALYRRAQVYMEIADLILAELDIKKAIEADPQNRE   45 (91)
Q Consensus         8 ~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~   45 (91)
                      ....+|+++|.++..+|++++|+..|++++++.|+...
T Consensus        98 ~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~l~~~~~~  135 (156)
T d2hr2a1          98 LWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKG  135 (156)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCS
T ss_pred             hhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhHHhhc
Confidence            35678999999999999999999999999999776543

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.08  E-value=3.2e-06  Score=54.59  Aligned_cols=85  Identities=12%  Similarity=0.010  Sum_probs=63.4

Q ss_pred             cccccCCCHHHHHHHHHHHHHhCC--HHHHHHHHHHHHHHCCCCHHHHH-HHHHHHHHHHHHHHHHHHHHHHhhhcccCC
Q 034553            2 VLDCDCHNVKALYRRAQVYMEIAD--LILAELDIKKAIEADPQNREVKL-LQKSLKQLQAESNKRDAKFYANMFARVTKD   78 (91)
Q Consensus         2 al~~~p~~~ka~~rrg~a~~~lg~--~~~A~~~~~~al~l~p~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~mf~~~~~~   78 (91)
                      +|+.+|.+..+|+.+|.++..++.  +++|+..++++++++|++..+.. .+..+....+...++ ...+.+++...+..
T Consensus        99 ~l~~~pk~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A-l~~~~~~i~~~p~~  177 (334)
T d1dcea1          99 CLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEE-LAFTDSLITRNFSN  177 (334)
T ss_dssp             HHHHCTTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHH-HHHHHTTTTTTCCC
T ss_pred             HHHhCCCcHHHHHHhhHHHHHhccccHHHHHHHHHHHHhhCchhhhhhhhHHHHHHHhccccHHH-HHHHHHHHHcCCCC
Confidence            577899999999999999988875  89999999999999999987754 344454444444443 34677777777666


Q ss_pred             chhhhhhhh
Q 034553           79 SSVATKVGY   87 (91)
Q Consensus        79 ~~~~~~~g~   87 (91)
                      ....+..|.
T Consensus       178 ~~a~~~l~~  186 (334)
T d1dcea1         178 YSSWHYRSC  186 (334)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            666555554

>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: BTAD-like
domain: Probable regulatory protein EmbR, middle domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.05  E-value=4.4e-06  Score=50.78  Aligned_cols=61  Identities=8%  Similarity=-0.063  Sum_probs=53.9

Q ss_pred             ccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 034553            5 CDCHNVKALYRRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQKSLKQLQAESNKRDA   65 (91)
Q Consensus         5 ~~p~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~~   65 (91)
                      +.+....++..++.++..+|++++|+..+++++.++|.+..+...+..+....+...++..
T Consensus        62 l~~~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~P~~e~~~~~l~~al~~~Gr~~eAl~  122 (179)
T d2ff4a2          62 LVEDKVLAHTAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALG  122 (179)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHCCCchHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHH
Confidence            3455678999999999999999999999999999999999999999888888888777643

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.00  E-value=3.4e-06  Score=58.04  Aligned_cols=54  Identities=7%  Similarity=-0.116  Sum_probs=37.5

Q ss_pred             cccccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
Q 034553            2 VLDCDCHNVKALYRRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQKSLKQ   55 (91)
Q Consensus         2 al~~~p~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~   55 (91)
                      |++++|++..+|+.+|.++...|++.+|+..|.+++.++|..+.++..|..+-.
T Consensus       178 A~~l~P~~~~~~~~Lg~~~~~~~~~~~A~~~y~ral~~~~~~~~a~~nL~~~~~  231 (497)
T d1ya0a1         178 AAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALS  231 (497)
T ss_dssp             HHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHHH
T ss_pred             HHHHCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHH
Confidence            566677777777777777777777777777777777777777666666655544

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

Probab=97.79  E-value=2.6e-06  Score=50.12  Aligned_cols=62  Identities=6%  Similarity=-0.112  Sum_probs=46.0

Q ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCC-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 034553           10 VKALYRRAQVYMEIADLILAELDIKKAIEADPQN-----------REVKLLQKSLKQLQAESNKRDAKFYANMF   72 (91)
Q Consensus        10 ~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~-----------~~~~~~l~~~~~~~~~~~~~~~~~~~~mf   72 (91)
                      ..+|.++|.++..+|+|++|+.++++++++.|..           ..+...+..+...+++..++.. .|.+..
T Consensus        55 a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~a~~~~g~~~~~lg~~eeA~~-~~~~Al  127 (156)
T d2hr2a1          55 AFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMP-EFKKVV  127 (156)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHH-HHHHHH
T ss_pred             HHHHHHHHHHHHHcCccchhhHhhhhhhhcccccccccccccchhHHHHhhhHHHHHHHHHHHHHHH-HHHHHH
Confidence            4689999999999999999999999999985521           1245566777777777766533 344433

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.66  E-value=4.5e-05  Score=52.28  Aligned_cols=56  Identities=13%  Similarity=-0.044  Sum_probs=50.7

Q ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 034553           10 VKALYRRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQKSLKQLQAESNKRDA   65 (91)
Q Consensus        10 ~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~~   65 (91)
                      ..+++++|.++...++|++|+..|++|++++|++..+...|+.+....++..++..
T Consensus       152 ~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~P~~~~~~~~Lg~~~~~~~~~~~A~~  207 (497)
T d1ya0a1         152 QHCLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIF  207 (497)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHcCCHHHHHH
Confidence            47899999999999999999999999999999999999999999888877776643

>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: BTAD-like
domain: Probable regulatory protein EmbR, middle domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.57  E-value=5.2e-05  Score=45.81  Aligned_cols=41  Identities=10%  Similarity=-0.096  Sum_probs=37.6

Q ss_pred             cccccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHH-------HHHCCC
Q 034553            2 VLDCDCHNVKALYRRAQVYMEIADLILAELDIKKA-------IEADPQ   42 (91)
Q Consensus         2 al~~~p~~~ka~~rrg~a~~~lg~~~~A~~~~~~a-------l~l~p~   42 (91)
                      +|+++|.+..+|..++.++..+|++++|+..|+++       +.++|.
T Consensus        93 al~~~P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~  140 (179)
T d2ff4a2          93 LTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPG  140 (179)
T ss_dssp             HHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCC
T ss_pred             HHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCcC
Confidence            57899999999999999999999999999999998       556786

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

Probab=97.38  E-value=0.00022  Score=44.25  Aligned_cols=61  Identities=20%  Similarity=0.068  Sum_probs=47.7

Q ss_pred             ccccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCH-----HHHHHHHHHHHHHHHHHHH
Q 034553            3 LDCDCHNVKALYRRAQVYMEIADLILAELDIKKAIEADPQNR-----EVKLLQKSLKQLQAESNKR   63 (91)
Q Consensus         3 l~~~p~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~-----~~~~~l~~~~~~~~~~~~~   63 (91)
                      |+-++-++..+..+|.+++..|++++|+..+++++++.|++.     .+...+..+....++..++
T Consensus         5 ~~~~~~~ae~~~lrA~~~~~~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A   70 (366)
T d1hz4a_           5 IREDTMHAEFNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRS   70 (366)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred             ccccchhHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHHHCCCHHHH
Confidence            344566778889999999999999999999999999999863     3555666666666666554

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]}

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

Probab=97.17  E-value=0.00052  Score=43.70  Aligned_cols=69  Identities=13%  Similarity=0.066  Sum_probs=53.4

Q ss_pred             HHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCchhhhhhh
Q 034553           17 AQVYMEIADLILAELDIKKAIEADPQNREVKLLQKSLKQLQAESNKRDAKFYANMFARVTKDSSVATKVG   86 (91)
Q Consensus        17 g~a~~~lg~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~mf~~~~~~~~~~~~~g   86 (91)
                      ++-.+..|++++|+..|+++++.+|+|..++..+..+....++..++.. .++......+........++
T Consensus         3 ~~~aL~~G~l~eAl~~l~~al~~~P~d~~ar~~La~lL~~~G~~e~A~~-~l~~a~~l~P~~~~~~~~l~   71 (264)
T d1zbpa1           3 WKNALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADE-QLMQSIKLFPEYLPGASQLR   71 (264)
T ss_dssp             HHHHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHH-HHHHHHHHCGGGHHHHHHHH
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHH-HHHHHHHhCCCcHHHHHHHH
Confidence            3445678999999999999999999999999999999999999888754 45666655544433443333

>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: HAT/Suf repeat
domain: Cleavage stimulation factor 77 kDa subunit CSTF3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.89  E-value=0.001  Score=42.18  Aligned_cols=70  Identities=4%  Similarity=-0.076  Sum_probs=37.2

Q ss_pred             cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHhhhccc
Q 034553            6 DCHNVKALYRRAQVYMEIADLILAELDIKKAIEADPQNR-EVKLLQKSLKQLQAESNKRDAKFYANMFARVT   76 (91)
Q Consensus         6 ~p~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~mf~~~~   76 (91)
                      .|.+..-|+..+..+...|+++.|...|+++++..|.+. .+...+..+....+..... +..+.++....+
T Consensus        95 ~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~a-r~i~~~al~~~~  165 (308)
T d2onda1          95 LKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSG-RMIFKKAREDAR  165 (308)
T ss_dssp             TTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHH-HHHHHHHHTSTT
T ss_pred             CCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHH-HHHHHHHHHhCC
Confidence            556666666666666666666666666666666666553 2444444444444333332 233444443333

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

Probab=96.81  E-value=0.00084  Score=41.47  Aligned_cols=41  Identities=12%  Similarity=-0.038  Sum_probs=35.5

Q ss_pred             cccccCCC-----HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCC
Q 034553            2 VLDCDCHN-----VKALYRRAQVYMEIADLILAELDIKKAIEADPQ   42 (91)
Q Consensus         2 al~~~p~~-----~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~   42 (91)
                      +|++.|++     ..+++.+|.++..+|++++|+..|++++++.|.
T Consensus        38 aL~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~   83 (366)
T d1hz4a_          38 ALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQ   83 (366)
T ss_dssp             HHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred             HHhhCcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHh
Confidence            56677776     468999999999999999999999999998654

>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: HAT/Suf repeat
domain: Cleavage stimulation factor 77 kDa subunit CSTF3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.70  E-value=0.006  Score=38.48  Aligned_cols=88  Identities=8%  Similarity=0.003  Sum_probs=63.7

Q ss_pred             cccccCCC-HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCch
Q 034553            2 VLDCDCHN-VKALYRRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQKSLKQLQAESNKRDAKFYANMFARVTKDSS   80 (91)
Q Consensus         2 al~~~p~~-~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~mf~~~~~~~~   80 (91)
                      +|+..|.+ ...|...+......|+++.|...|.++++..|.+..+......+........+.-...+.+++...+...+
T Consensus       125 ~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~~~al~~~~~~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~~p~~~~  204 (308)
T d2onda1         125 LLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPE  204 (308)
T ss_dssp             HHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHhcCChHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhhhhhHH
Confidence            46777865 56789999999999999999999999999999988777666655443322222223467777777766666


Q ss_pred             hhhhhhhcc
Q 034553           81 VATKVGYFA   89 (91)
Q Consensus        81 ~~~~~g~f~   89 (91)
                      .-..|+.|+
T Consensus       205 ~w~~y~~~~  213 (308)
T d2onda1         205 YVLAYIDYL  213 (308)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            666666553

>d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein C (HcpC)
species: Helicobacter pylori [TaxId: 210]

Probab=96.53  E-value=0.0051  Score=37.66  Aligned_cols=46  Identities=15%  Similarity=0.003  Sum_probs=39.0

Q ss_pred             CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Q 034553            9 NVKALYRRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQKSLKQL   56 (91)
Q Consensus         9 ~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~   56 (91)
                      |+++++.+|..++..+++++|++.|+++.++  ++..+.-.|..+...
T Consensus         1 ~p~~~~~lG~~~~~~~d~~~A~~~~~kAa~~--g~~~A~~~Lg~~y~~   46 (265)
T d1ouva_           1 DPKELVGLGAKSYKEKDFTQAKKYFEKACDL--KENSGCFNLGVLYYQ   46 (265)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHc
Confidence            6899999999999999999999999999775  577777777766543

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.59  E-value=0.033  Score=34.63  Aligned_cols=36  Identities=22%  Similarity=0.100  Sum_probs=32.5

Q ss_pred             CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCH
Q 034553            9 NVKALYRRAQVYMEIADLILAELDIKKAIEADPQNR   44 (91)
Q Consensus         9 ~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~   44 (91)
                      ...++..+|.++..+|+|++|+..|++++.+.|.+.
T Consensus       157 ~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~  192 (290)
T d1qqea_         157 SNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNR  192 (290)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCT
T ss_pred             hhhHHHHHHHHHHHcChHHHHHHHHHHHHHhCccch
Confidence            456789999999999999999999999999988764

>d2cfua2 d.157.1.13 (A:20-524) Alkylsulfatase SdsA1 {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a+b)
fold: Metallo-hydrolase/oxidoreductase
superfamily: Metallo-hydrolase/oxidoreductase
family: Alkylsulfatase-like
domain: Alkylsulfatase SdsA1
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=94.44  E-value=0.1  Score=35.76  Aligned_cols=61  Identities=15%  Similarity=0.174  Sum_probs=51.6

Q ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 034553           10 VKALYRRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQKSLKQLQAESNKRDAKFYANMF   72 (91)
Q Consensus        10 ~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~mf   72 (91)
                      ..+...+|...+..|+|.-|.+..+.++..+|+|.+++..+..+-..+....+  -..++++|
T Consensus       430 ~~~~~~~a~~~~~~g~~~wa~~l~~~~~~a~p~~~~ar~l~a~~~~~l~~~~~--~~~~rn~y  490 (505)
T d2cfua2         430 AERLLEQARASYARGEYRWVVEVVNRLVFAEPDNRAARELQADALEQLGYQAE--NAGWRNSY  490 (505)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHCS--SHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhCc--CHHHHHHH
Confidence            56788999999999999999999999999999999999999998888877654  23455544

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=93.75  E-value=0.066  Score=33.17  Aligned_cols=36  Identities=8%  Similarity=0.026  Sum_probs=29.9

Q ss_pred             CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCC
Q 034553            8 HNVKALYRRAQVYMEIADLILAELDIKKAIEADPQN   43 (91)
Q Consensus         8 ~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~   43 (91)
                      +-..+|...|.++..+|++++|+..|++++++.+.+
T Consensus        75 ~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~  110 (290)
T d1qqea_          75 EAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHR  110 (290)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhc
Confidence            345788899999999999999999999999886543

>d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein C (HcpC)
species: Helicobacter pylori [TaxId: 210]

Probab=92.20  E-value=0.32  Score=29.11  Aligned_cols=47  Identities=15%  Similarity=0.150  Sum_probs=37.0

Q ss_pred             cCCCHHHHHHHHHHHHH----hCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Q 034553            6 DCHNVKALYRRAQVYME----IADLILAELDIKKAIEADPQNREVKLLQKSLK   54 (91)
Q Consensus         6 ~p~~~ka~~rrg~a~~~----lg~~~~A~~~~~~al~l~p~~~~~~~~l~~~~   54 (91)
                      ++.++.|+++.|..+..    ..+++.|+..|+++.+..  ++.+...|..+.
T Consensus       174 ~~g~~~A~~~lg~~y~~g~~~~~d~~~A~~~~~~aa~~g--~~~a~~~LG~~y  224 (265)
T d1ouva_         174 DLKDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE--NGGGCFNLGAMQ  224 (265)
T ss_dssp             HTTCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHH
T ss_pred             cccccccccchhhhcccCcccccchhhhhhhHhhhhccc--CHHHHHHHHHHH
Confidence            56789999999999887    678999999999998874  555655555554

>d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=91.56  E-value=0.6  Score=26.11  Aligned_cols=68  Identities=10%  Similarity=0.068  Sum_probs=55.9

Q ss_pred             CHHHHHHHHHHHHHhC---CHHHHHHHHHHHHHHCCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccC
Q 034553            9 NVKALYRRAQVYMEIA---DLILAELDIKKAIEADPQNR-EVKLLQKSLKQLQAESNKRDAKFYANMFARVTK   77 (91)
Q Consensus         9 ~~ka~~rrg~a~~~lg---~~~~A~~~~~~al~l~p~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~mf~~~~~   77 (91)
                      .+++-|+-|-++.+..   +.+.|+..|+.+++.+|.+. +..-.|.....+++++.++. ..+.+++...+.
T Consensus        34 s~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~p~~~rd~lY~Lav~yyklgdy~~A~-~~~~~~L~ieP~  105 (124)
T d2pqrb1          34 TIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAK-RYVDTLFEHERN  105 (124)
T ss_dssp             CHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHH-HHHHHHHHHCTT
T ss_pred             CcchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHhhHHHHH-HHHHHHHccCCC
Confidence            4789999999999775   45689999999999999875 89999999999999998874 356776666543

>d1om2a_ a.23.4.1 (A:) Mitochondrial import receptor subunit Tom20 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: Open three-helical up-and-down bundle
superfamily: Mitochondrial import receptor subunit Tom20
family: Mitochondrial import receptor subunit Tom20
domain: Mitochondrial import receptor subunit Tom20
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=91.45  E-value=0.27  Score=26.41  Aligned_cols=38  Identities=11%  Similarity=0.050  Sum_probs=31.6

Q ss_pred             HHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHH
Q 034553           14 YRRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQK   51 (91)
Q Consensus        14 ~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~~~~~l~   51 (91)
                      ..+|..++..|++++|+.+|-+|+.+-|+-..+...++
T Consensus        24 V~lGE~Ll~~G~~~~g~~h~~nAi~Vc~qP~~LL~ilq   61 (95)
T d1om2a_          24 IQLGEELLAQGDYEKGVDHLTNAIAVCGQPQQLLQVLQ   61 (95)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHHHHHSCHHHHHHHHH
T ss_pred             HHHHHHHHhCCCHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            35788999999999999999999999988666555443

>d2crba1 a.7.16.1 (A:8-90) Nuclear receptor binding factor 2, NRBF2, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: Spectrin repeat-like
superfamily: MIT domain-like
family: MIT domain
domain: Nuclear receptor binding factor 2, NRBF2, N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=88.85  E-value=0.86  Score=23.70  Aligned_cols=40  Identities=18%  Similarity=0.040  Sum_probs=30.0

Q ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHH------CCCCHHHHHHH
Q 034553           11 KALYRRAQVYMEIADLILAELDIKKAIEA------DPQNREVKLLQ   50 (91)
Q Consensus        11 ka~~rrg~a~~~lg~~~~A~~~~~~al~l------~p~~~~~~~~l   50 (91)
                      .-+-|+|..++.-|.|++|++..++|...      -|.++.+...|
T Consensus         9 H~~~RrAer~l~~~rydeAIech~kA~~yl~eA~klt~s~~~l~SL   54 (83)
T d2crba1           9 HQQSRRADRLLAAGKYEEAISCHRKATTYLSEAMKLTESEQAHLSL   54 (83)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTCCCHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhCCCcHHHHHHH
Confidence            44678999999999999999988776552      26666655544

>d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein B (HcpB)
species: Helicobacter pylori [TaxId: 210]

Probab=87.18  E-value=1.3  Score=23.89  Aligned_cols=47  Identities=15%  Similarity=0.038  Sum_probs=35.1

Q ss_pred             cCCCHHHHHHHHHHHHH----hCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Q 034553            6 DCHNVKALYRRAQVYME----IADLILAELDIKKAIEADPQNREVKLLQKSLK   54 (91)
Q Consensus         6 ~p~~~ka~~rrg~a~~~----lg~~~~A~~~~~~al~l~p~~~~~~~~l~~~~   54 (91)
                      +.+++.|.+.+|..+..    ..+++.|+..|+++.+.  .++.+...|..+.
T Consensus        51 ~~g~~~a~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa~~--g~~~a~~~Lg~~y  101 (133)
T d1klxa_          51 ELNSGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGL--NDQDGCLILGYKQ  101 (133)
T ss_dssp             HTTCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHH
T ss_pred             cccchhhhhhHHHhhhhccccchhhHHHHHHHhhhhcc--CcchHHHHHHHHH
Confidence            45788899999988876    45789999999998875  4555655565553

>d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein B (HcpB)
species: Helicobacter pylori [TaxId: 210]

Probab=85.39  E-value=0.89  Score=24.63  Aligned_cols=36  Identities=8%  Similarity=-0.055  Sum_probs=30.4

Q ss_pred             cCCCHHHHHHHHHHHHH----hCCHHHHHHHHHHHHHHCC
Q 034553            6 DCHNVKALYRRAQVYME----IADLILAELDIKKAIEADP   41 (91)
Q Consensus         6 ~p~~~ka~~rrg~a~~~----lg~~~~A~~~~~~al~l~p   41 (91)
                      +..++.|.+++|..+..    ..+++.|+..|++|.++..
T Consensus        87 ~~g~~~a~~~Lg~~y~~G~gv~~d~~~A~~~~~~Aa~~G~  126 (133)
T d1klxa_          87 GLNDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS  126 (133)
T ss_dssp             HTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred             ccCcchHHHHHHHHHHcCCccCCCHHHHHHHHHHHHHCCC
Confidence            45789999999999887    4689999999999998753

>d1wfda_ a.7.14.1 (A:) Hypothetical protein 1500032H18Rik {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: Spectrin repeat-like
superfamily: MIT domain
family: MIT domain
domain: Hypothetical protein 1500032H18Rik
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=83.29  E-value=1.9  Score=22.47  Aligned_cols=29  Identities=17%  Similarity=0.085  Sum_probs=25.2

Q ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Q 034553           11 KALYRRAQVYMEIADLILAELDIKKAIEA   39 (91)
Q Consensus        11 ka~~rrg~a~~~lg~~~~A~~~~~~al~l   39 (91)
                      -.+..+|+-+-..|+|++|+..|..++++
T Consensus        16 ~~l~~~Av~~D~~g~y~eA~~~Y~~aie~   44 (93)
T d1wfda_          16 VAVLKRAVELDAESRYQQALVCYQEGIDM   44 (93)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            44788899999999999999999998774

>d1wr0a1 a.7.14.1 (A:5-81) Vacuolar sorting protein 4b (VPS4B, SKD1 protein) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: Spectrin repeat-like
superfamily: MIT domain
family: MIT domain
domain: Vacuolar sorting protein 4b (VPS4B, SKD1 protein)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.12  E-value=1.7  Score=21.81  Aligned_cols=30  Identities=13%  Similarity=-0.053  Sum_probs=23.4

Q ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Q 034553           10 VKALYRRAQVYMEIADLILAELDIKKAIEA   39 (91)
Q Consensus        10 ~ka~~rrg~a~~~lg~~~~A~~~~~~al~l   39 (91)
                      ...+..+|.-.-..|+|++|+..|..|+++
T Consensus        11 A~~l~~~Av~~D~~~~y~~A~~~Y~~a~~~   40 (77)
T d1wr0a1          11 AIDLASKAAQEDKAGNYEEALQLYQHAVQY   40 (77)
T ss_dssp             HHHHHHHHHHHHHTTCCSSHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            345778888889999988888888777664