Citrus Sinensis ID: 034559

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-
Protein Sequence
MNSTSPANSSISTTPLVGGGSSSNNTATDEFHFPSDLISIQDRKDEALQVLRSDLMATLNKEVKSLDEDNWMFEGPRSHIHLISTAASFIK
Secondary Structure (PSIPRED)
ccccccccccEEcccEEcccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccEEEEEcccccccc
Secondary Structure Prediction (SSPRO)
cccccccccEEEEEEEEccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccEEEEEcccccHcc
Coil and Loop (DISEMBL)
mnstspanssisttplvgggsssnntatdefhfpsdlisiQDRKDEALQVLRSDLMATLNKEVKsldednwmfegprshiHLISTAASFIK
Flexible Loop (DISEMBL)
mnstspanssisttplvggGSSSNNTATDEFHFPSDLISIQDRKDEALQVLRSDLMATLNKEVKSLDEDNWMFEGPRSHIHLISTAASFIK
Low Complexity Region (SEG)
MNSTSPANSSISTTPLVGGGSSSNNTATDEFHFPSDLISIQDRKDEALQVLRSDLMATLNKEVKSLDEDNWMFEGPRSHIHLISTAASFIK
Disordered region (IsUnstruct)
***********************************************LQVLRSDLMATLNK*V**LDEDNWMFEGPRSHIHLIS*******
Disordered Region (DISOPRED)
*************************TATDEFHFPSDLISIQDRKDEALQVLRSDLMATLNKEVKSLDEDNWMFEGPRSHIHLISTAA****
Disordered Region (DISEMBL)
**********************SNNTATDEFHFPSDLISIQDRKDEALQVLRSDLMATLNKEVKSLDEDNWMFEGPRSHIHLISTAASFIK
Disordered Region (DISPRO)
********SSISTTPLVGGG******ATDEFHFPSDLISIQDRKDEALQVLRSDLMATLNKEVKSLDEDNWMFEGPRSHIHLISTAAS*I*
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MNSTSPANSSISTTPLVGGGSSSNNTATDEFHFPSDLISIQDRKDEALQVLRSDLMATLNKEVKSLDEDNWMFEGPRSHIHLISTAASFIK
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	91
255573441	121	conserved hypothetical protein [Ricinus	0.967	0.727	0.730	7e-29
297745182	99	unnamed protein product [Vitis vinifera]	0.923	0.848	0.738	3e-27
225433788	106	PREDICTED: uncharacterized protein LOC10	0.989	0.849	0.688	5e-27
224138988	120	predicted protein [Populus trichocarpa]	0.978	0.741	0.722	2e-25
449436836	99	PREDICTED: uncharacterized protein LOC10	1.0	0.919	0.586	7e-24
449436834	113	PREDICTED: uncharacterized protein LOC10	0.923	0.743	0.619	2e-23
18398373	100	uncharacterized protein [Arabidopsis tha	1.0	0.91	0.619	2e-21
224074313	121	predicted protein [Populus trichocarpa]	0.692	0.520	0.777	3e-21
8920604	647	Strong similarity to an unknown protein	0.692	0.097	0.666	4e-19
388491252	109	unknown [Lotus japonicus]	0.923	0.770	0.658	4e-18

>gi|255573441|ref|XP_002527646.1| conserved hypothetical protein [Ricinus communis] gi|223532951|gb|EEF34717.1| conserved hypothetical protein [Ricinus communis]

 Score =  131 bits (329), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 65/89 (73%), Positives = 73/89 (82%), Gaps = 1/89 (1%)

Query: 1  MNSTSPANSSISTTPLVGGGSSSNNTATDEFHFPSDLISIQDRKDEALQVLRSDLMATLN 60
          MNSTSPA+SS+STT +VGGGS +N  + DEF FPSDLISI DRK+EA  VL++DLM TLN
Sbjct: 1  MNSTSPAHSSVSTTAIVGGGSVTN-PSFDEFQFPSDLISIHDRKEEAFLVLKADLMVTLN 59

Query: 61 KEVKSLDEDNWMFEGPRSHIHLISTAASF 89
          KEVKSLDEDNW FEGPRS IHLIS    F
Sbjct: 60 KEVKSLDEDNWKFEGPRSCIHLISRPGGF 88

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297745182|emb|CBI39174.3| unnamed protein product [Vitis vinifera]

 Score =  125 bits (315), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 62/84 (73%), Positives = 71/84 (84%)

Query: 1  MNSTSPANSSISTTPLVGGGSSSNNTATDEFHFPSDLISIQDRKDEALQVLRSDLMATLN 60
          MNSTSPA+S IS + +VGGGSSS   A+++F  PSD ISIQDRKDEAL VL+SDLMA LN
Sbjct: 1  MNSTSPAHSVISGSAVVGGGSSSTALASEDFPLPSDPISIQDRKDEALLVLKSDLMAALN 60

Query: 61 KEVKSLDEDNWMFEGPRSHIHLIS 84
          KEVKSLDEDNW F+GPRS IHL+S
Sbjct: 61 KEVKSLDEDNWKFDGPRSRIHLLS 84

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225433788|ref|XP_002272866.1| PREDICTED: uncharacterized protein LOC100244603 [Vitis vinifera]

 Score =  125 bits (313), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 62/90 (68%), Positives = 72/90 (80%)

Query: 1  MNSTSPANSSISTTPLVGGGSSSNNTATDEFHFPSDLISIQDRKDEALQVLRSDLMATLN 60
          MNSTSPA+S IS + +VGGGSSS   A+++F  PSD ISIQDRKDEAL VL+SDLMA LN
Sbjct: 1  MNSTSPAHSVISGSAVVGGGSSSTALASEDFPLPSDPISIQDRKDEALLVLKSDLMAALN 60

Query: 61 KEVKSLDEDNWMFEGPRSHIHLISTAASFI 90
          KEVKSLDEDNW F+GPRS IHL+S     +
Sbjct: 61 KEVKSLDEDNWKFDGPRSRIHLLSRPGGVL 90

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224138988|ref|XP_002326740.1| predicted protein [Populus trichocarpa] gi|222834062|gb|EEE72539.1| predicted protein [Populus trichocarpa]

 Score =  119 bits (299), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 65/90 (72%), Positives = 74/90 (82%), Gaps = 1/90 (1%)

Query: 1  MNSTSPANSSISTTPLVGGGSSS-NNTATDEFHFPSDLISIQDRKDEALQVLRSDLMATL 59
          MNSTSP NSS+STT ++GGG  S +N A D+FHFPSDLISIQDRKDEA+  L++DLMA L
Sbjct: 1  MNSTSPTNSSVSTTAIIGGGGGSVSNAALDDFHFPSDLISIQDRKDEAMLALKTDLMAAL 60

Query: 60 NKEVKSLDEDNWMFEGPRSHIHLISTAASF 89
          NKEVKSLDEDNW F GPRS I+LIS  AS 
Sbjct: 61 NKEVKSLDEDNWKFGGPRSRINLISRPASL 90

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449436836|ref|XP_004136198.1| PREDICTED: uncharacterized protein LOC101211880 isoform 2 [Cucumis sativus] gi|449525812|ref|XP_004169910.1| PREDICTED: uncharacterized LOC101211880 isoform 2 [Cucumis sativus]

 Score =  114 bits (285), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 54/92 (58%), Positives = 73/92 (79%), Gaps = 1/92 (1%)

Query: 1  MNSTSPANSSISTTPLVGGGSSSNNTATDEFHFPSDLISIQDRKDEALQVLRSDLMATLN 60
          MN+ SPANSS+STT + G  S++   + D+F FPS+LIS+ +RKDEA+  L+S++MA LN
Sbjct: 1  MNTPSPANSSVSTTAVAGRCSTNAALSLDDFRFPSNLISVPERKDEAMTALKSNIMAALN 60

Query: 61 KEVKSLDEDNWMFEGPRSHIHLIS-TAASFIK 91
          KEVKSLD+DNWMFEGPRS I+L+S    +F+K
Sbjct: 61 KEVKSLDDDNWMFEGPRSRINLMSRQGGAFLK 92

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449436834|ref|XP_004136197.1| PREDICTED: uncharacterized protein LOC101211880 isoform 1 [Cucumis sativus] gi|449525810|ref|XP_004169909.1| PREDICTED: uncharacterized LOC101211880 isoform 1 [Cucumis sativus]

 Score =  113 bits (282), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 52/84 (61%), Positives = 69/84 (82%)

Query: 1  MNSTSPANSSISTTPLVGGGSSSNNTATDEFHFPSDLISIQDRKDEALQVLRSDLMATLN 60
          MN+ SPANSS+STT + G  S++   + D+F FPS+LIS+ +RKDEA+  L+S++MA LN
Sbjct: 1  MNTPSPANSSVSTTAVAGRCSTNAALSLDDFRFPSNLISVPERKDEAMTALKSNIMAALN 60

Query: 61 KEVKSLDEDNWMFEGPRSHIHLIS 84
          KEVKSLD+DNWMFEGPRS I+L+S
Sbjct: 61 KEVKSLDDDNWMFEGPRSRINLMS 84

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18398373|ref|NP_564394.1| uncharacterized protein [Arabidopsis thaliana] gi|12597860|gb|AAG60169.1|AC084110_2 unknown protein [Arabidopsis thaliana] gi|21554525|gb|AAM63599.1| unknown [Arabidopsis thaliana] gi|28393556|gb|AAO42198.1| unknown protein [Arabidopsis thaliana] gi|28973599|gb|AAO64124.1| unknown protein [Arabidopsis thaliana] gi|332193341|gb|AEE31462.1| uncharacterized protein [Arabidopsis thaliana]

 Score =  106 bits (264), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 57/92 (61%), Positives = 73/92 (79%), Gaps = 1/92 (1%)

Query: 1  MNSTSPANSSISTTPLVGGGSSSNNTAT-DEFHFPSDLISIQDRKDEALQVLRSDLMATL 59
          MN  SPA+S +STT + GGG SS   A  D+FHFP D+ S+Q+RKDEA++VL++DLM  L
Sbjct: 1  MNGASPAHSLVSTTAVAGGGGSSGAAAGLDDFHFPPDIPSMQERKDEAMRVLKADLMTEL 60

Query: 60 NKEVKSLDEDNWMFEGPRSHIHLISTAASFIK 91
          +KEVKSL+ED+WMFEGPRS IHLIS   +F+K
Sbjct: 61 DKEVKSLEEDSWMFEGPRSRIHLISRRGNFLK 92

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224074313|ref|XP_002304350.1| predicted protein [Populus trichocarpa] gi|222841782|gb|EEE79329.1| predicted protein [Populus trichocarpa]

 Score =  105 bits (263), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 49/63 (77%), Positives = 55/63 (87%)

Query: 22 SSNNTATDEFHFPSDLISIQDRKDEALQVLRSDLMATLNKEVKSLDEDNWMFEGPRSHIH 81
          S NN   D+FHFPSDLISIQDRKDEA+  L++DLMA LNKEVKSLD+DNW FEGPRSHI+
Sbjct: 23 SVNNVVLDDFHFPSDLISIQDRKDEAMLALKTDLMAALNKEVKSLDDDNWKFEGPRSHIN 82

Query: 82 LIS 84
          LIS
Sbjct: 83 LIS 85

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|8920604|gb|AAF81326.1|AC007767_6 Strong similarity to an unknown protein F19D11.4 gi|7485759 from Arabidopsis thaliana BAC F19D11 gb|AC005310. EST gb|AV535485 comes from this gene [Arabidopsis thaliana]

 Score = 98.6 bits (244), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 42/63 (66%), Positives = 55/63 (87%)

Query: 29  DEFHFPSDLISIQDRKDEALQVLRSDLMATLNKEVKSLDEDNWMFEGPRSHIHLISTAAS 88
           D+FHFP D+ S+Q+RKDEA++VL++DLM  L+KEVKSL+ED+WMFEGPRS IHLIS   +
Sbjct: 577 DDFHFPPDIPSMQERKDEAMRVLKADLMTELDKEVKSLEEDSWMFEGPRSRIHLISRRGN 636

Query: 89  FIK 91
           F+K
Sbjct: 637 FLK 639

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388491252|gb|AFK33692.1| unknown [Lotus japonicus]

 Score = 95.5 bits (236), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 56/85 (65%), Positives = 68/85 (80%), Gaps = 1/85 (1%)

Query: 1  MNSTSPANSSISTTPLVGGGSSSNNTAT-DEFHFPSDLISIQDRKDEALQVLRSDLMATL 59
          MNS+SPA+SSISTT +V GG +SN   + D+ HFP D IS Q+RKDE + VL+SD+MA L
Sbjct: 1  MNSSSPAHSSISTTAVVSGGGASNAAVSFDDLHFPFDPISTQERKDEVMLVLKSDIMAAL 60

Query: 60 NKEVKSLDEDNWMFEGPRSHIHLIS 84
          +KEVKSLDEDNW FEGPRS I+L S
Sbjct: 61 DKEVKSLDEDNWKFEGPRSRINLTS 85

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	91
TAIR|locus:2028296	100	SAMBA "AT1G32310" [Arabidopsis	1.0	0.91	0.619	1.5e-26

TAIR|locus:2028296 SAMBA "AT1G32310" [Arabidopsis thaliana (taxid:3702)]

 Score = 299 (110.3 bits), Expect = 1.5e-26, P = 1.5e-26
 Identities = 57/92 (61%), Positives = 73/92 (79%)

Query:     1 MNSTSPANSSISTTPLVGGGSSSNNTA-TDEFHFPSDLISIQDRKDEALQVLRSDLMATL 59
             MN  SPA+S +STT + GGG SS   A  D+FHFP D+ S+Q+RKDEA++VL++DLM  L
Sbjct:     1 MNGASPAHSLVSTTAVAGGGGSSGAAAGLDDFHFPPDIPSMQERKDEAMRVLKADLMTEL 60

Query:    60 NKEVKSLDEDNWMFEGPRSHIHLISTAASFIK 91
             +KEVKSL+ED+WMFEGPRS IHLIS   +F+K
Sbjct:    61 DKEVKSLEEDSWMFEGPRSRIHLISRRGNFLK 92


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.310   0.124   0.344    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0       91        91   0.00091  102 3  11 23  0.40    30
                                                     29  0.39    31


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  492 (52 KB)
  Total size of DFA:  97 KB (2070 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  12.18u 0.10s 12.28t   Elapsed:  00:00:01
  Total cpu time:  12.18u 0.10s 12.28t   Elapsed:  00:00:01
  Start:  Thu May  9 19:28:35 2013   End:  Thu May  9 19:28:36 2013

GO:0005515 "protein binding" evidence=IPI

GO:0007276 "gamete generation" evidence=RCA

GO:0032875 "regulation of DNA endoreduplication" evidence=RCA

GO:0051302 "regulation of cell division" evidence=RCA

GO:0051510 "regulation of unidimensional cell growth" evidence=RCA

GO:0009555 "pollen development" evidence=IMP

GO:0009556 "microsporogenesis" evidence=IMP

GO:0010997 "anaphase-promoting complex binding" evidence=IDA

GO:0045732 "positive regulation of protein catabolic process" evidence=IMP

GO:0046621 "negative regulation of organ growth" evidence=IMP

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Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	91
KOG4797	123	consensus Transcriptional regulator [Transcription	86.02
PF12940	442	RAG1: Recombination-activation protein 1 (RAG1); I	85.32

>KOG4797 consensus Transcriptional regulator [Transcription]

Probab=86.02  E-value=0.96  Score=33.22  Aligned_cols=26  Identities=27%  Similarity=0.571  Sum_probs=21.5

Q ss_pred             hhHHHHHHHHHHHHHHHHHHhccccc
Q 034559           43 RKDEALQVLRSDLMATLNKEVKSLDE   68 (91)
Q Consensus        43 RKDeam~~LKsdlmaaL~kEVKsLde   68 (91)
                      .-+.||+..|+-||=|.+.||.-|-+
T Consensus        49 KIeQAMDLVKtHLmfAVREEVe~Lk~   74 (123)
T KOG4797|consen   49 KIEQAMDLVKTHLMFAVREEVEVLKE   74 (123)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34789999999999999999876543

>PF12940 RAG1: Recombination-activation protein 1 (RAG1); InterPro: IPR024627 This entry represents recombination activating protein 1 (RAG1), which is the catalytic component of the RAG complex

Probab=85.32  E-value=1.2  Score=38.16  Aligned_cols=60  Identities=35%  Similarity=0.428  Sum_probs=45.0

Q ss_pred             CCCcceeccceecC--CCCCcccccccCCCCCCcchhhhhhHHHHH----HHHHHHHHHHHHHhcccccC
Q 034559            6 PANSSISTTPLVGG--GSSSNNTATDEFHFPSDLISIQDRKDEALQ----VLRSDLMATLNKEVKSLDED   69 (91)
Q Consensus         6 PA~S~vSttav~gg--ggs~~~~a~ddfhfp~D~is~~~RKDeam~----~LKsdlmaaL~kEVKsLdeD   69 (91)
                      ||--.|||..=||=  |=|.-+.++||+  |+|-|.-.+|-|.|+.    .|.+|||+-|++  ..||+.
T Consensus        12 p~lknvs~s~~vgIi~glsgw~ssvdd~--p~dtItrrFrYdvALvsaLkDlEEdImEGLre--~gleds   77 (442)
T PF12940_consen   12 PALKNVSTSCDVGIINGLSGWASSVDDS--PADTITRRFRYDVALVSALKDLEEDIMEGLRE--SGLEDS   77 (442)
T ss_pred             CcccccCCcCcccceeccCCCcccccCC--cchhhhhhccchHHHHHHHHHHHHHHHHhHhh--cCcccc
Confidence            56667777765553  226677889998  8899999999999875    566799999976  355554

The RAG complex is a multi-protein complex that mediates DNA cleavage during V(D)J (variable-diversity-joining) recombination []. RAG1 mediates DNA-binding to the conserved recombination signal sequences (RSS) []. Many of the proteins recognised by this entry are fragments.; GO: 0043565 sequence-specific DNA binding, 0033151 V(D)J recombination

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00