Citrus Sinensis ID: 034568

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-
Protein Sequence
MMWDEWVDCNNNDEQTQQDSHVNFDFLSLLAKPKDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAYQGKRSLD
Secondary Structure (PSIPRED)
ccHHHHHHHcccccccHHccccHHHHHHHHHcccccHHHccccccccHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHccccc
Secondary Structure Prediction (SSPRO)
ccHHHcccccccccccccccccccHHHHHHcccccHHHHHcccccccHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHcccc
Coil and Loop (DISEMBL)
mmwdewvdcnnndeqtqqdshvnfdflsllakpkdyyKILEVDYDATEEEIRSNYIRLALkwhpdkqkdrdCATSRFQEINEAYQGKRSLD
Flexible Loop (DISEMBL)
MMWDEWVDCNNNdeqtqqdshvNFDFLSLLAKPKDYYKILEVDYDATEEEIRSNYIRlalkwhpdkqkdrdCATSRFQEineayqgkrsld
Low Complexity Region (SEG)
MMWDEWVDCNNNDEQTQQDSHVNFDFLSLLAKPKDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAYQGKRSLD
Disordered region (IsUnstruct)
*****WV*************HVNFDFLSLLAKPKDYYKILEVDYDATEEEIRSNYIRLALKWH****************************
Disordered Region (DISOPRED)
*MWD**********************LSLLAKPKDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKD*DCATSRFQEINEAYQGKR***
Disordered Region (DISEMBL)
MMWDEWVDCNNNDEQTQQDSHVNFDFLSLLAKPKDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEA********
Disordered Region (DISPRO)
******************DSHVNFDFLSLLAKPKDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAYQGKR***
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MMWDEWVDCNNNDEQTQQDSHVNFDFLSLLAKPKDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAYQGKRSLD
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	91	2.2.26 [Sep-21-2011]
Q72GN6	350	Chaperone protein DnaJ OS	yes	no	0.560	0.145	0.568	3e-10
Q5SLW9	350	Chaperone protein DnaJ 1	yes	no	0.560	0.145	0.568	3e-10
B9MJZ0	388	Chaperone protein DnaJ OS	yes	no	0.615	0.144	0.517	7e-10
Q75WD2	380	Chaperone protein DnaJ OS	yes	no	0.604	0.144	0.472	9e-10
Q3AF07	381	Chaperone protein DnaJ OS	yes	no	0.571	0.136	0.538	1e-09
A4XYF5	375	Chaperone protein DnaJ OS	yes	no	0.615	0.149	0.459	1e-09
Q67S53	386	Chaperone protein DnaJ OS	yes	no	0.604	0.142	0.553	1e-09
A8G9K9	375	Chaperone protein DnaJ OS	yes	no	0.560	0.136	0.538	1e-09
A4XKA5	387	Chaperone protein DnaJ OS	yes	no	0.615	0.144	0.5	1e-09
C1DFM2	375	Chaperone protein DnaJ OS	yes	no	0.604	0.146	0.45	2e-09

>sp|Q72GN6|DNAJ_THET2 Chaperone protein DnaJ OS=Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039) GN=dnaJ PE=3 SV=1

 Score = 63.5 bits (153), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 29/51 (56%), Positives = 36/51 (70%)

Query: 34 KDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAY 84
          KDYY IL V  +A++EEI+  Y RLALK+HPD+      A  RF+EINEAY
Sbjct: 2  KDYYAILGVSREASQEEIKKAYRRLALKYHPDRNPGDKEAEERFKEINEAY 52

Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, DnaK-independent fashion. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, DnaK and GrpE are required for fully efficient folding. Also involved, together with DnaK and GrpE, in the DNA replication of plasmids through activation of initiation proteins.
Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039) (taxid: 262724)

>sp|Q5SLW9|DNAJ1_THET8 Chaperone protein DnaJ 1 OS=Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) GN=dnaJ1 PE=3 SV=1

 Score = 63.5 bits (153), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 29/51 (56%), Positives = 36/51 (70%)

Query: 34 KDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAY 84
          KDYY IL V  +A++EEI+  Y RLALK+HPD+      A  RF+EINEAY
Sbjct: 2  KDYYAILGVSREASQEEIKKAYRRLALKYHPDRNPGDKEAEERFKEINEAY 52

Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, DnaK-independent fashion. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, DnaK and GrpE are required for fully efficient folding. Also involved, together with DnaK and GrpE, in the DNA replication of plasmids through activation of initiation proteins.

Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) (taxid: 300852)

>sp|B9MJZ0|DNAJ_CALBD Chaperone protein DnaJ OS=Caldicellulosiruptor bescii (strain ATCC BAA-1888 / DSM 6725 / Z-1320) GN=dnaJ PE=3 SV=1

 Score = 62.4 bits (150), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 29/56 (51%), Positives = 39/56 (69%)

Query: 30 LAKPKDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAYQ 85
          +A+ KDYY+IL V  +ATEEEI+  Y RLA ++HPD       A  +F+EINEAY+
Sbjct: 1  MAQKKDYYEILGVPRNATEEEIKRAYRRLAKQYHPDANPGNKEAEEKFKEINEAYE 56

Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, DnaK-independent fashion. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, DnaK and GrpE are required for fully efficient folding. Also involved, together with DnaK and GrpE, in the DNA replication of plasmids through activation of initiation proteins.

Anaerocellum thermophilum (strain DSM 6725 / Z-1320) (taxid: 521460)

>sp|Q75WD2|DNAJ_ACEP3 Chaperone protein DnaJ OS=Acetobacter pasteurianus (strain NBRC 3283 / LMG 1513 / CCTM 1153) GN=dnaJ PE=3 SV=2

 Score = 62.0 bits (149), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 26/55 (47%), Positives = 39/55 (70%)

Query: 30 LAKPKDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAY 84
          +A   DYY ILEV   AT +E++ +Y +LA+K+HPD+    D A ++F+EIN+AY
Sbjct: 1  MATQLDYYAILEVSRTATADELKKSYRKLAMKYHPDRNPGDDAAEAKFKEINQAY 55

Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, DnaK-independent fashion. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, DnaK and GrpE are required for fully efficient folding. Also involved, together with DnaK and GrpE, in the DNA replication of plasmids through activation of initiation proteins.

Acetobacter pasteurianus (strain NBRC 3283 / LMG 1513 / CCTM 1153) (taxid: 634452)

>sp|Q3AF07|DNAJ_CARHZ Chaperone protein DnaJ OS=Carboxydothermus hydrogenoformans (strain Z-2901 / DSM 6008) GN=dnaJ PE=3 SV=1

 Score = 62.0 bits (149), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 28/52 (53%), Positives = 37/52 (71%)

Query: 34 KDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAYQ 85
          +DYY+IL V  +AT EEI+  Y +LA K+HPD  KD   A  +F+EINEAY+
Sbjct: 3  RDYYEILGVARNATPEEIKKAYRKLARKYHPDVNKDDPNAAEKFKEINEAYE 54

Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, DnaK-independent fashion. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, DnaK and GrpE are required for fully efficient folding. Also involved, together with DnaK and GrpE, in the DNA replication of plasmids through activation of initiation proteins.

Carboxydothermus hydrogenoformans (strain Z-2901 / DSM 6008) (taxid: 246194)

>sp|A4XYF5|DNAJ_PSEMY Chaperone protein DnaJ OS=Pseudomonas mendocina (strain ymp) GN=dnaJ PE=3 SV=1

 Score = 62.0 bits (149), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 28/61 (45%), Positives = 41/61 (67%), Gaps = 5/61 (8%)

Query: 34 KDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAYQ-----GKR 88
          +DYY++L V+  A+E E++  Y RLA+K+HPD+  D   A  +F+E NEAY+     GKR
Sbjct: 4  RDYYEVLGVERGASEAELKKAYRRLAMKYHPDRNPDDKGAEEKFKEANEAYEVLSDAGKR 63

Query: 89 S 89
          S
Sbjct: 64 S 64

Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, DnaK-independent fashion. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, DnaK and GrpE are required for fully efficient folding. Also involved, together with DnaK and GrpE, in the DNA replication of plasmids through activation of initiation proteins.

Pseudomonas mendocina (strain ymp) (taxid: 399739)

>sp|Q67S53|DNAJ_SYMTH Chaperone protein DnaJ OS=Symbiobacterium thermophilum (strain T / IAM 14863) GN=dnaJ PE=3 SV=1

 Score = 62.0 bits (149), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 31/56 (55%), Positives = 39/56 (69%), Gaps = 1/56 (1%)

Query: 30 LAKPKDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAYQ 85
          LAK +DYY+IL V  +ATE EI+  +  LA K+HPD  KD   A  +F+EINEAYQ
Sbjct: 4  LAK-RDYYEILGVPRNATEAEIKKAFRNLARKYHPDANKDDPDAAEKFKEINEAYQ 58

Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, DnaK-independent fashion. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, DnaK and GrpE are required for fully efficient folding. Also involved, together with DnaK and GrpE, in the DNA replication of plasmids through activation of initiation proteins.

Symbiobacterium thermophilum (taxid: 2734)

>sp|A8G9K9|DNAJ_SERP5 Chaperone protein DnaJ OS=Serratia proteamaculans (strain 568) GN=dnaJ PE=3 SV=1

 Score = 61.6 bits (148), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 28/52 (53%), Positives = 39/52 (75%), Gaps = 1/52 (1%)

Query: 34 KDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAYQ 85
          KDYY+IL V   A E EI+  Y RLA+K+HPD+ +++D A +RF+EI EAY+
Sbjct: 4  KDYYEILGVSKTAEEREIKKAYKRLAMKFHPDRNQEQD-AEARFKEIKEAYE 54

Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, DnaK-independent fashion. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, DnaK and GrpE are required for fully efficient folding. Also involved, together with DnaK and GrpE, in the DNA replication of plasmids through activation of initiation proteins.

Serratia proteamaculans (strain 568) (taxid: 399741)

>sp|A4XKA5|DNAJ_CALS8 Chaperone protein DnaJ OS=Caldicellulosiruptor saccharolyticus (strain ATCC 43494 / DSM 8903) GN=dnaJ PE=3 SV=1

 Score = 61.6 bits (148), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 28/56 (50%), Positives = 39/56 (69%)

Query: 30 LAKPKDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAYQ 85
          +A+ KDYY+IL V  +AT+EEI+  Y RLA ++HPD       A  +F+EINEAY+
Sbjct: 1  MAQKKDYYEILGVPRNATQEEIKRAYRRLAKQYHPDANPGNKEAEEKFKEINEAYE 56

Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, DnaK-independent fashion. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, DnaK and GrpE are required for fully efficient folding. Also involved, together with DnaK and GrpE, in the DNA replication of plasmids through activation of initiation proteins.

Caldicellulosiruptor saccharolyticus (strain ATCC 43494 / DSM 8903) (taxid: 351627)

>sp|C1DFM2|DNAJ_AZOVD Chaperone protein DnaJ OS=Azotobacter vinelandii (strain DJ / ATCC BAA-1303) GN=dnaJ PE=3 SV=1

 Score = 61.2 bits (147), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 27/60 (45%), Positives = 40/60 (66%), Gaps = 5/60 (8%)

Query: 34 KDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAYQ-----GKR 88
          +DYY++L V+  A E E++  Y RLA+K+HPD+  D   A  +F+E+NEAY+     GKR
Sbjct: 4  RDYYEVLGVERGAGEAELKKAYRRLAMKYHPDRNPDDKSAEEKFKEVNEAYEVLSDAGKR 63

Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, DnaK-independent fashion. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, DnaK and GrpE are required for fully efficient folding. Also involved, together with DnaK and GrpE, in the DNA replication of plasmids through activation of initiation proteins.

Azotobacter vinelandii (strain DJ / ATCC BAA-1303) (taxid: 322710)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	91
255545914	119	conserved hypothetical protein [Ricinus	1.0	0.764	0.691	5e-28
224067027	141	predicted protein [Populus trichocarpa]	0.923	0.595	0.709	1e-26
449436962	137	PREDICTED: chaperone protein DnaJ-like [	0.901	0.598	0.709	4e-26
356552953	138	PREDICTED: protein tumorous imaginal dis	0.923	0.608	0.659	2e-25
217071656	137	unknown [Medicago truncatula]	0.802	0.532	0.767	4e-25
359492931	138	PREDICTED: chaperone protein DnaJ 1-like	0.791	0.521	0.777	5e-25
388522767	146	unknown [Medicago truncatula]	0.802	0.5	0.767	8e-25
357489941	146	Chaperone protein dnaJ [Medicago truncat	0.802	0.5	0.767	8e-25
255638069	135	unknown [Glycine max]	0.912	0.614	0.650	7e-24
357138006	132	PREDICTED: chaperone protein DnaJ-like [	0.923	0.636	0.654	1e-23

>gi|255545914|ref|XP_002514017.1| conserved hypothetical protein [Ricinus communis] gi|223547103|gb|EEF48600.1| conserved hypothetical protein [Ricinus communis]

 Score =  128 bits (321), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 65/94 (69%), Positives = 77/94 (81%), Gaps = 3/94 (3%)

Query: 1  MMWDEWVDCNNNDEQ---TQQDSHVNFDFLSLLAKPKDYYKILEVDYDATEEEIRSNYIR 57
          MMWD++ +   N  Q   +  DSH+NFDFLSL++KPKDYYKILEVDYDA+++ IRSNYIR
Sbjct: 2  MMWDDYQNQTQNQNQDQDSNSDSHLNFDFLSLVSKPKDYYKILEVDYDASDDAIRSNYIR 61

Query: 58 LALKWHPDKQKDRDCATSRFQEINEAYQGKRSLD 91
          LALKWHPDKQK  D ATSRFQEINEAYQ KR ++
Sbjct: 62 LALKWHPDKQKSEDSATSRFQEINEAYQAKRKVE 95

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224067027|ref|XP_002302333.1| predicted protein [Populus trichocarpa] gi|222844059|gb|EEE81606.1| predicted protein [Populus trichocarpa]

 Score =  123 bits (308), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 66/93 (70%), Positives = 71/93 (76%), Gaps = 9/93 (9%)

Query: 2  MWDEWVDCNNNDEQTQ---------QDSHVNFDFLSLLAKPKDYYKILEVDYDATEEEIR 52
          MWDEW D     +Q Q         QDS  NFD LSLL++PKDYYKILEVDYDAT++ IR
Sbjct: 1  MWDEWDDSQTQQQQQQQQQQQQQPDQDSCFNFDLLSLLSRPKDYYKILEVDYDATDDAIR 60

Query: 53 SNYIRLALKWHPDKQKDRDCATSRFQEINEAYQ 85
          SNYIRLALKWHPDKQKD D ATSRFQEINEAYQ
Sbjct: 61 SNYIRLALKWHPDKQKDEDSATSRFQEINEAYQ 93

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449436962|ref|XP_004136261.1| PREDICTED: chaperone protein DnaJ-like [Cucumis sativus] gi|449497042|ref|XP_004160296.1| PREDICTED: chaperone protein DnaJ-like [Cucumis sativus]

 Score =  122 bits (305), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 61/86 (70%), Positives = 69/86 (80%), Gaps = 4/86 (4%)

Query: 3  WDEWVDCNNNDEQTQQD---SHVNFDFLSLLAKPKDYYKILEVDYDATEEEIRSNYIRLA 59
          WDE     N+D Q   D   SH NFDF S + KPKDYYKILEV+YDAT+++IRSNYIRLA
Sbjct: 5  WDEHT-VTNSDRQPDSDNQYSHFNFDFFSAIVKPKDYYKILEVEYDATDDDIRSNYIRLA 63

Query: 60 LKWHPDKQKDRDCATSRFQEINEAYQ 85
          LKWHPDKQKD+D ATSRFQ+INEAYQ
Sbjct: 64 LKWHPDKQKDKDGATSRFQDINEAYQ 89

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356552953|ref|XP_003544824.1| PREDICTED: protein tumorous imaginal discs, mitochondrial-like [Glycine max]

 Score =  119 bits (298), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 60/91 (65%), Positives = 70/91 (76%), Gaps = 7/91 (7%)

Query: 1  MMWDEWVDCNNN------DEQTQQDSHVNFDFLSLLAKPKDYYKILEVDYDATEEEIRSN 54
          MMW EW D  +       +  +  DSH+NFDF S L++PKDYYKILEVDYDAT++ IRSN
Sbjct: 1  MMW-EWEDYEDTITEPEPEPDSDSDSHLNFDFFSALSRPKDYYKILEVDYDATDDAIRSN 59

Query: 55 YIRLALKWHPDKQKDRDCATSRFQEINEAYQ 85
          YIRLALKWHPDK KD + ATSRFQ+INEAYQ
Sbjct: 60 YIRLALKWHPDKHKDHNSATSRFQDINEAYQ 90

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|217071656|gb|ACJ84188.1| unknown [Medicago truncatula]

 Score =  118 bits (296), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 56/73 (76%), Positives = 65/73 (89%)

Query: 13 DEQTQQDSHVNFDFLSLLAKPKDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRDC 72
          D+    +S++NFDFLS L+KPKDYYKILEVDYDA ++ IRSNYIRLALKWHPDKQKD+D 
Sbjct: 17 DQIPDPNSYLNFDFLSTLSKPKDYYKILEVDYDANDDTIRSNYIRLALKWHPDKQKDQDS 76

Query: 73 ATSRFQEINEAYQ 85
          ATSRFQ+INEAYQ
Sbjct: 77 ATSRFQDINEAYQ 89

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359492931|ref|XP_002283904.2| PREDICTED: chaperone protein DnaJ 1-like [Vitis vinifera] gi|302142037|emb|CBI19240.3| unnamed protein product [Vitis vinifera]

 Score =  118 bits (295), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 56/72 (77%), Positives = 63/72 (87%)

Query: 14 EQTQQDSHVNFDFLSLLAKPKDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRDCA 73
          E+   DS +NFDFLSLL+KPKDYY +LEVDYDATE+ IRSN+IRLALKWHPDKQKD D +
Sbjct: 18 EEPPPDSPLNFDFLSLLSKPKDYYGMLEVDYDATEDAIRSNFIRLALKWHPDKQKDPDNS 77

Query: 74 TSRFQEINEAYQ 85
          T RFQEINEAYQ
Sbjct: 78 TIRFQEINEAYQ 89

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388522767|gb|AFK49445.1| unknown [Medicago truncatula]

 Score =  117 bits (293), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 56/73 (76%), Positives = 65/73 (89%)

Query: 13 DEQTQQDSHVNFDFLSLLAKPKDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRDC 72
          D+    +S++NFDFLS L+KPKDYYKILEVDYDA ++ IRSNYIRLALKWHPDKQKD+D 
Sbjct: 26 DQIPDPNSYLNFDFLSTLSKPKDYYKILEVDYDANDDTIRSNYIRLALKWHPDKQKDQDS 85

Query: 73 ATSRFQEINEAYQ 85
          ATSRFQ+INEAYQ
Sbjct: 86 ATSRFQDINEAYQ 98

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357489941|ref|XP_003615258.1| Chaperone protein dnaJ [Medicago truncatula] gi|355516593|gb|AES98216.1| Chaperone protein dnaJ [Medicago truncatula]

 Score =  117 bits (293), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 56/73 (76%), Positives = 65/73 (89%)

Query: 13 DEQTQQDSHVNFDFLSLLAKPKDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRDC 72
          D+    +S++NFDFLS L+KPKDYYKILEVDYDA ++ IRSNYIRLALKWHPDKQKD+D 
Sbjct: 26 DQIPDPNSYLNFDFLSTLSKPKDYYKILEVDYDANDDTIRSNYIRLALKWHPDKQKDQDS 85

Query: 73 ATSRFQEINEAYQ 85
          ATSRFQ+INEAYQ
Sbjct: 86 ATSRFQDINEAYQ 98

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255638069|gb|ACU19349.1| unknown [Glycine max]

 Score =  114 bits (285), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 54/83 (65%), Positives = 65/83 (78%)

Query: 3  WDEWVDCNNNDEQTQQDSHVNFDFLSLLAKPKDYYKILEVDYDATEEEIRSNYIRLALKW 62
          WD++ D     +  Q DSH+ FDF S L++PKDYYKILEVDYDAT++ IRSNYIRLALKW
Sbjct: 5  WDDYQDTIPKHDLPQPDSHLKFDFFSALSRPKDYYKILEVDYDATDDAIRSNYIRLALKW 64

Query: 63 HPDKQKDRDCATSRFQEINEAYQ 85
          HP K KD++  TS FQ+INEAYQ
Sbjct: 65 HPGKHKDQNFVTSGFQDINEAYQ 87

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357138006|ref|XP_003570589.1| PREDICTED: chaperone protein DnaJ-like [Brachypodium distachyon]

 Score =  113 bits (283), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 55/84 (65%), Positives = 66/84 (78%)

Query: 2  MWDEWVDCNNNDEQTQQDSHVNFDFLSLLAKPKDYYKILEVDYDATEEEIRSNYIRLALK 61
          MW EW D        +++  V+FDF+SLL KPKDYYKILEVDYDA+EE IRS+YIRLALK
Sbjct: 1  MWWEWWDGEEAAAGPREEVPVDFDFISLLCKPKDYYKILEVDYDASEETIRSSYIRLALK 60

Query: 62 WHPDKQKDRDCATSRFQEINEAYQ 85
          WHPDK+K  + +TS FQ+INEAYQ
Sbjct: 61 WHPDKKKGEENSTSIFQDINEAYQ 84

Source: Brachypodium distachyon

Species: Brachypodium distachyon

Genus: Brachypodium

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	91
TAIR|locus:505006286	119	AT2G33735 [Arabidopsis thalian	0.714	0.546	0.656	1.4e-18
TAIR|locus:2174170	128	AT5G16650 [Arabidopsis thalian	0.571	0.406	0.788	7.5e-18
FB|FBgn0034091	346	mrj "mrj" [Drosophila melanoga	0.560	0.147	0.557	8.7e-11
ASPGD|ASPL0000012039	634	AN4192 [Emericella nidulans (t	0.846	0.121	0.384	5.8e-10
UNIPROTKB|G4N1N5	416	MGG_07502 "Chaperone dnaJ 2" [	0.681	0.149	0.451	9.9e-10
SGD|S000004827	377	SCJ1 "One of several homologs	0.637	0.153	0.516	1.3e-09
FB|FBgn0052640	132	CG32640 [Drosophila melanogast	0.549	0.378	0.549	1.4e-09
FB|FBgn0052641	132	CG32641 [Drosophila melanogast	0.549	0.378	0.549	1.4e-09
TAIR|locus:2179429	347	AT5G25530 [Arabidopsis thalian	0.582	0.152	0.462	1.8e-09
UNIPROTKB|Q5T657	155	DNAJB5 "DnaJ homolog subfamily	0.549	0.322	0.529	2.9e-09

TAIR|locus:505006286 AT2G33735 [Arabidopsis thaliana (taxid:3702)]

 Score = 224 (83.9 bits), Expect = 1.4e-18, P = 1.4e-18
 Identities = 44/67 (65%), Positives = 54/67 (80%)

Query:    19 DSHVNFDFLSLLAKPKDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRDCATSRFQ 78
             DSH  FDF       KD+YK+LE++ DA+++EIRS++IRLALKWHPDK K+ D ATSRFQ
Sbjct:     8 DSH-GFDFFDF-EDYKDHYKVLELNCDASDDEIRSSFIRLALKWHPDKFKEEDSATSRFQ 65

Query:    79 EINEAYQ 85
             EINEAYQ
Sbjct:    66 EINEAYQ 72

GO:0005737 "cytoplasm" evidence=ISM

GO:0006457 "protein folding" evidence=IEA;ISS

GO:0031072 "heat shock protein binding" evidence=IEA

GO:0051082 "unfolded protein binding" evidence=IEA

TAIR|locus:2174170 AT5G16650 [Arabidopsis thaliana (taxid:3702)]

 Score = 217 (81.4 bits), Expect = 7.5e-18, P = 7.5e-18
 Identities = 41/52 (78%), Positives = 43/52 (82%)

Query:    33 PKDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAY 84
             PKDYYKILEVDYDATEE IR NY +LALKWHPDK K    AT +FQEINEAY
Sbjct:     9 PKDYYKILEVDYDATEELIRLNYRKLALKWHPDKHKGDSAATEKFQEINEAY 60

GO:0005737 "cytoplasm" evidence=ISM

GO:0006457 "protein folding" evidence=IEA;ISS

GO:0031072 "heat shock protein binding" evidence=IEA

GO:0051082 "unfolded protein binding" evidence=IEA

FB|FBgn0034091 mrj "mrj" [Drosophila melanogaster (taxid:7227)]

 Score = 156 (60.0 bits), Expect = 8.7e-11, P = 8.7e-11
 Identities = 29/52 (55%), Positives = 38/52 (73%)

Query:    35 DYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDR-DCATSRFQEINEAYQ 85
             DYYKIL+V   AT+ E++  Y +LALKWHPDK  D  D A  RF+E++EAY+
Sbjct:     3 DYYKILDVSRSATDSEVKKAYRKLALKWHPDKNPDNLDEANKRFRELSEAYE 54

GO:0005575 "cellular_component" evidence=ND

GO:0006457 "protein folding" evidence=ISS

GO:0051082 "unfolded protein binding" evidence=ISS

ASPGD|ASPL0000012039 AN4192 [Emericella nidulans (taxid:162425)]

 Score = 153 (58.9 bits), Expect = 5.8e-10, P = 5.8e-10
 Identities = 30/78 (38%), Positives = 49/78 (62%)

Query:     8 DCNNNDEQTQQDSHVNFDFLSLLAKPKDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQ 67
             + N  ++  ++D     +F    A+ KDYYKIL V  DATE +++  Y +LA+K+HPDK 
Sbjct:   468 EANPGEKGIREDIR-RAEFELKKAQRKDYYKILGVSKDATETDLKKAYRKLAIKYHPDKN 526

Query:    68 KDRDCATSRFQEINEAYQ 85
             ++ +    +F+EI EAY+
Sbjct:   527 REGEAGDEKFKEIGEAYE 544

GO:0051082 "unfolded protein binding" evidence=IEA

GO:0006457 "protein folding" evidence=IEA

GO:0031072 "heat shock protein binding" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

UNIPROTKB|G4N1N5 MGG_07502 "Chaperone dnaJ 2" [Magnaporthe oryzae 70-15 (taxid:242507)]

 Score = 148 (57.2 bits), Expect = 9.9e-10, P = 9.9e-10
 Identities = 28/62 (45%), Positives = 40/62 (64%)

Query:    24 FDFLSLLAKPKDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEA 83
             F  + L+   +DYYKILE+D +A E+ I+  Y RL+ KWHPDK      A  +F E++EA
Sbjct:    11 FSLVQLVFAAEDYYKILEIDRNADEKAIKIAYRRLSKKWHPDKNPGDATAEGKFVEVSEA 70

Query:    84 YQ 85
             Y+
Sbjct:    71 YE 72

GO:0005575 "cellular_component" evidence=ND

SGD|S000004827 SCJ1 "One of several homologs of bacterial chaperone DnaJ" [Saccharomyces cerevisiae (taxid:4932)]

 Score = 146 (56.5 bits), Expect = 1.3e-09, P = 1.3e-09
 Identities = 32/62 (51%), Positives = 42/62 (67%)

Query:    27 LSLLAKP----KDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINE 82
             LSLL  P    +DYY ILE+D DATE+EI+S Y +L+ K+HPDK    + A  +F E+ E
Sbjct:    11 LSLLLLPLILAQDYYAILEIDKDATEKEIKSAYRQLSKKYHPDKNAGSEEAHQKFIEVGE 70

Query:    83 AY 84
             AY
Sbjct:    71 AY 72

GO:0034975 "protein folding in endoplasmic reticulum" evidence=IMP

GO:0006457 "protein folding" evidence=IEA

GO:0031072 "heat shock protein binding" evidence=IEA

GO:0051082 "unfolded protein binding" evidence=IEA

GO:0006986 "response to unfolded protein" evidence=IMP

GO:0005788 "endoplasmic reticulum lumen" evidence=IEA;IDA

GO:0006810 "transport" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:0051087 "chaperone binding" evidence=ISS;IMP

GO:0030433 "ER-associated protein catabolic process" evidence=IMP

GO:0005783 "endoplasmic reticulum" evidence=IEA

FB|FBgn0052640 CG32640 [Drosophila melanogaster (taxid:7227)]

 Score = 139 (54.0 bits), Expect = 1.4e-09, P = 1.4e-09
 Identities = 28/51 (54%), Positives = 39/51 (76%)

Query:    34 KDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAY 84
             +DYY IL VD++AT+EEIR  Y R+AL +HPDK K     T++F++INEA+
Sbjct:     3 EDYYMILGVDHNATDEEIRRAYKRMALIYHPDKNK-HPRTTAQFRKINEAF 52

GO:0009408 "response to heat" evidence=ISS

FB|FBgn0052641 CG32641 [Drosophila melanogaster (taxid:7227)]

 Score = 139 (54.0 bits), Expect = 1.4e-09, P = 1.4e-09
 Identities = 28/51 (54%), Positives = 39/51 (76%)

Query:    34 KDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAY 84
             +DYY IL VD++AT+EEIR  Y R+AL +HPDK K     T++F++INEA+
Sbjct:     3 EDYYMILGVDHNATDEEIRRAYKRMALIYHPDKNK-HPRTTAQFRKINEAF 52

GO:0009408 "response to heat" evidence=ISS

TAIR|locus:2179429 AT5G25530 [Arabidopsis thaliana (taxid:3702)]

 Score = 144 (55.7 bits), Expect = 1.8e-09, P = 1.8e-09
 Identities = 25/54 (46%), Positives = 42/54 (77%)

Query:    35 DYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRDC-ATSRFQEINEAYQGK 87
             DYY IL+V+ +ATE++++ +Y +LA+KWHPDK  +    A ++F++I+EAY+ K
Sbjct:     4 DYYDILKVNRNATEDDLKKSYRKLAMKWHPDKNPNTKTEAEAKFKQISEAYEAK 57

GO:0005737 "cytoplasm" evidence=ISM

GO:0006457 "protein folding" evidence=IEA;ISS

GO:0031072 "heat shock protein binding" evidence=IEA

GO:0051082 "unfolded protein binding" evidence=IEA

UNIPROTKB|Q5T657 DNAJB5 "DnaJ homolog subfamily B member 5" [Homo sapiens (taxid:9606)]

 Score = 136 (52.9 bits), Expect = 2.9e-09, P = 2.9e-09
 Identities = 27/51 (52%), Positives = 37/51 (72%)

Query:    34 KDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAY 84
             KDYYKIL +   A E+EI+  Y ++ALK+HPDK K+ + A  +F+EI EAY
Sbjct:     3 KDYYKILGIPSGANEDEIKKAYRKMALKYHPDKNKEPN-AEEKFKEIAEAY 52

GO:0000122 "negative regulation of transcription from RNA polymerase II promoter" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	91
COG0484	371	COG0484, DnaJ, DnaJ-class molecular chaperone with	3e-20
cd06257	55	cd06257, DnaJ, DnaJ domain or J-domain	2e-19
TIGR02349	354	TIGR02349, DnaJ_bact, chaperone protein DnaJ	2e-19
pfam00226	63	pfam00226, DnaJ, DnaJ domain	7e-19
PRK10767	371	PRK10767, PRK10767, chaperone protein DnaJ; Provis	4e-18
smart00271	60	smart00271, DnaJ, DnaJ molecular chaperone homolog	7e-17
PRK14295	389	PRK14295, PRK14295, chaperone protein DnaJ; Provis	6e-16
PRK14291	382	PRK14291, PRK14291, chaperone protein DnaJ; Provis	2e-15
PRK14277	386	PRK14277, PRK14277, chaperone protein DnaJ; Provis	2e-15
PRK14298	377	PRK14298, PRK14298, chaperone protein DnaJ; Provis	1e-14
PRK14282	369	PRK14282, PRK14282, chaperone protein DnaJ; Provis	2e-14
PRK14297	380	PRK14297, PRK14297, chaperone protein DnaJ; Provis	2e-14
PRK14281	397	PRK14281, PRK14281, chaperone protein DnaJ; Provis	3e-14
PRK14299	291	PRK14299, PRK14299, chaperone protein DnaJ; Provis	7e-14
PRK14293	374	PRK14293, PRK14293, chaperone protein DnaJ; Provis	9e-14
PRK14301	373	PRK14301, PRK14301, chaperone protein DnaJ; Provis	3e-13
PRK14284	391	PRK14284, PRK14284, chaperone protein DnaJ; Provis	3e-13
PRK14278	378	PRK14278, PRK14278, chaperone protein DnaJ; Provis	8e-13
PRK14292	371	PRK14292, PRK14292, chaperone protein DnaJ; Provis	8e-13
PRK14283	378	PRK14283, PRK14283, chaperone protein DnaJ; Provis	8e-13
PRK14294	366	PRK14294, PRK14294, chaperone protein DnaJ; Provis	1e-12
PRK14276	380	PRK14276, PRK14276, chaperone protein DnaJ; Provis	5e-12
PRK14290	365	PRK14290, PRK14290, chaperone protein DnaJ; Provis	8e-12
PRK14279	392	PRK14279, PRK14279, chaperone protein DnaJ; Provis	1e-11
PRK14280	376	PRK14280, PRK14280, chaperone protein DnaJ; Provis	1e-11
PRK14286	372	PRK14286, PRK14286, chaperone protein DnaJ; Provis	2e-11
PRK14289	386	PRK14289, PRK14289, chaperone protein DnaJ; Provis	4e-11
PRK14296	372	PRK14296, PRK14296, chaperone protein DnaJ; Provis	1e-10
PRK14285	365	PRK14285, PRK14285, chaperone protein DnaJ; Provis	2e-10
PRK14287	371	PRK14287, PRK14287, chaperone protein DnaJ; Provis	4e-10
COG2214	237	COG2214, CbpA, DnaJ-class molecular chaperone [Pos	8e-10
PRK10266	306	PRK10266, PRK10266, curved DNA-binding protein Cbp	1e-09
PTZ00037	421	PTZ00037, PTZ00037, DnaJ_C chaperone protein; Prov	4e-09
TIGR03835	871	TIGR03835, termin_org_DnaJ, terminal organelle ass	4e-09
PRK14288	369	PRK14288, PRK14288, chaperone protein DnaJ; Provis	6e-09
PRK14300	372	PRK14300, PRK14300, chaperone protein DnaJ; Provis	7e-08
COG5407	610	COG5407, SEC63, Preprotein translocase subunit Sec	3e-05

>gnl|CDD|223560 COG0484, DnaJ, DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones]

 Score = 82.3 bits (204), Expect = 3e-20
 Identities = 27/54 (50%), Positives = 37/54 (68%)

Query: 32 KPKDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAYQ 85
            +DYY+IL V  DA+EEEI+  Y +LA K+HPD+      A  +F+EINEAY+
Sbjct: 2  AKRDYYEILGVSKDASEEEIKKAYRKLAKKYHPDRNPGDKEAEEKFKEINEAYE 55

Length = 371

>gnl|CDD|99751 cd06257, DnaJ, DnaJ domain or J-domain

 Score = 73.7 bits (182), Expect = 2e-19
 Identities = 29/51 (56%), Positives = 37/51 (72%)

Query: 35 DYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAYQ 85
          DYY IL V  DA++EEI+  Y +LALK+HPDK  D   A  +F+EINEAY+
Sbjct: 1  DYYDILGVPPDASDEEIKKAYRKLALKYHPDKNPDDPEAEEKFKEINEAYE 51

DnaJ/Hsp40 (heat shock protein 40) proteins are highly conserved and play crucial roles in protein translation, folding, unfolding, translocation, and degradation. They act primarily by stimulating the ATPase activity of Hsp70s, an important chaperonine family. Hsp40 proteins are characterized by the presence of a J domain, which mediates the interaction with Hsp70. They may contain other domains as well, and the architectures provide a means of classification. Length = 55

>gnl|CDD|233829 TIGR02349, DnaJ_bact, chaperone protein DnaJ

 Score = 79.6 bits (197), Expect = 2e-19
 Identities = 29/51 (56%), Positives = 40/51 (78%), Gaps = 1/51 (1%)

Query: 35 DYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAYQ 85
          DYY+IL V  DA+EEEI+  Y +LA K+HPD+ KD++ A  +F+EINEAY+
Sbjct: 1  DYYEILGVSKDASEEEIKKAYRKLAKKYHPDRNKDKE-AEEKFKEINEAYE 50

This model represents bacterial forms of DnaJ, part of the DnaK-DnaJ-GrpE chaperone system. The three components typically are encoded by consecutive genes. DnaJ homologs occur in many genomes, typically not near DnaK and GrpE-like genes; most such genes are not included by this family. Eukaryotic (mitochondrial and chloroplast) forms are not included in the scope of this family. Length = 354

>gnl|CDD|215804 pfam00226, DnaJ, DnaJ domain

 Score = 72.6 bits (179), Expect = 7e-19
 Identities = 28/51 (54%), Positives = 37/51 (72%)

Query: 35 DYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAYQ 85
          DYY+IL V  DA++EEI+  Y +LALK+HPDK      A  +F+EINEAY+
Sbjct: 1  DYYEILGVPRDASDEEIKKAYRKLALKYHPDKNPGDPAAEEKFKEINEAYE 51

DnaJ domains (J-domains) are associated with hsp70 heat-shock system and it is thought that this domain mediates the interaction. DnaJ-domain is therefore part of a chaperone (protein folding) system. The T-antigens, although not in Prosite are confirmed as DnaJ containing domains from literature. Length = 63

>gnl|CDD|236757 PRK10767, PRK10767, chaperone protein DnaJ; Provisional

 Score = 76.3 bits (189), Expect = 4e-18
 Identities = 23/51 (45%), Positives = 36/51 (70%)

Query: 34 KDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAY 84
          +DYY++L V  +A+E+EI+  Y +LA+K+HPD+      A  +F+EI EAY
Sbjct: 4  RDYYEVLGVSRNASEDEIKKAYRKLAMKYHPDRNPGDKEAEEKFKEIKEAY 54

Length = 371

>gnl|CDD|197617 smart00271, DnaJ, DnaJ molecular chaperone homology domain

 Score = 67.3 bits (165), Expect = 7e-17
 Identities = 27/53 (50%), Positives = 36/53 (67%), Gaps = 1/53 (1%)

Query: 34 KDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRD-CATSRFQEINEAYQ 85
           DYY+IL V  DA+ +EI+  Y +LALK+HPDK       A  +F+EINEAY+
Sbjct: 1  TDYYEILGVPRDASLDEIKKAYRKLALKYHPDKNPGDKEEAEEKFKEINEAYE 53

Length = 60

>gnl|CDD|237665 PRK14295, PRK14295, chaperone protein DnaJ; Provisional

 Score = 70.6 bits (173), Expect = 6e-16
 Identities = 28/51 (54%), Positives = 35/51 (68%)

Query: 34 KDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAY 84
          KDYYK+L V  DATE EI+  Y +LA ++HPD  K    A  RF+EI+EAY
Sbjct: 9  KDYYKVLGVPKDATEAEIKKAYRKLAREYHPDANKGDAKAEERFKEISEAY 59

Length = 389

>gnl|CDD|237661 PRK14291, PRK14291, chaperone protein DnaJ; Provisional

 Score = 69.0 bits (169), Expect = 2e-15
 Identities = 30/52 (57%), Positives = 39/52 (75%), Gaps = 1/52 (1%)

Query: 34 KDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAYQ 85
          KDYY+IL V  +AT+EEI+  Y RLA K+HPD  K+ + A  +F+EINEAYQ
Sbjct: 3  KDYYEILGVSRNATQEEIKKAYRRLARKYHPDFNKNPE-AEEKFKEINEAYQ 53

Length = 382

>gnl|CDD|184599 PRK14277, PRK14277, chaperone protein DnaJ; Provisional

 Score = 68.7 bits (168), Expect = 2e-15
 Identities = 31/56 (55%), Positives = 39/56 (69%)

Query: 30 LAKPKDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAYQ 85
          +A  KDYY+IL VD +ATEEEI+  Y RLA K+HPD       A  +F+EINEAY+
Sbjct: 1  MAAKKDYYEILGVDRNATEEEIKKAYRRLAKKYHPDLNPGDKEAEQKFKEINEAYE 56

Length = 386

>gnl|CDD|184612 PRK14298, PRK14298, chaperone protein DnaJ; Provisional

 Score = 66.4 bits (162), Expect = 1e-14
 Identities = 27/55 (49%), Positives = 41/55 (74%), Gaps = 1/55 (1%)

Query: 30 LAKPKDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAY 84
          +A  +DYY+IL +  DA+ E+I+  Y +LA+K+HPDK K+ D A  +F+EI+EAY
Sbjct: 1  MATTRDYYEILGLSKDASVEDIKKAYRKLAMKYHPDKNKEPD-AEEKFKEISEAY 54

Length = 377

>gnl|CDD|184603 PRK14282, PRK14282, chaperone protein DnaJ; Provisional

 Score = 66.4 bits (162), Expect = 2e-14
 Identities = 27/53 (50%), Positives = 38/53 (71%), Gaps = 1/53 (1%)

Query: 34 KDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQ-KDRDCATSRFQEINEAYQ 85
          KDYY+IL V  +AT+EEI+  Y RL  +WHPD+  ++R  A  +F+EI EAY+
Sbjct: 4  KDYYEILGVSRNATQEEIKRAYKRLVKEWHPDRHPENRKEAEQKFKEIQEAYE 56

Length = 369

>gnl|CDD|184611 PRK14297, PRK14297, chaperone protein DnaJ; Provisional

 Score = 66.3 bits (162), Expect = 2e-14
 Identities = 25/52 (48%), Positives = 39/52 (75%)

Query: 34 KDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAYQ 85
          KDYY++L ++  A+++EI+  + +LA+K+HPDK K    A  +F+EINEAYQ
Sbjct: 4  KDYYEVLGLEKGASDDEIKKAFRKLAIKYHPDKNKGNKEAEEKFKEINEAYQ 55

Length = 380

>gnl|CDD|237657 PRK14281, PRK14281, chaperone protein DnaJ; Provisional

 Score = 65.6 bits (160), Expect = 3e-14
 Identities = 25/52 (48%), Positives = 36/52 (69%)

Query: 34 KDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAYQ 85
          +DYY++L V   A ++EI+  Y +LALK+HPDK  D   A   F+E+NEAY+
Sbjct: 3  RDYYEVLGVSRSADKDEIKKAYRKLALKYHPDKNPDNKEAEEHFKEVNEAYE 54

Length = 397

>gnl|CDD|237667 PRK14299, PRK14299, chaperone protein DnaJ; Provisional

 Score = 64.2 bits (156), Expect = 7e-14
 Identities = 25/51 (49%), Positives = 35/51 (68%), Gaps = 1/51 (1%)

Query: 34 KDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAY 84
          KDYY IL V  +A+++EI+  + +LA K+HPD  K    A  +F+EINEAY
Sbjct: 4  KDYYAILGVPKNASQDEIKKAFKKLARKYHPDVNKSPG-AEEKFKEINEAY 53

Length = 291

>gnl|CDD|237663 PRK14293, PRK14293, chaperone protein DnaJ; Provisional

 Score = 64.2 bits (157), Expect = 9e-14
 Identities = 26/53 (49%), Positives = 35/53 (66%), Gaps = 1/53 (1%)

Query: 33 PKDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAYQ 85
            DYY+IL V  DA ++E++  Y RLA K+HPD  K+   A  RF+EIN AY+
Sbjct: 2  AADYYEILGVSRDADKDELKRAYRRLARKYHPDVNKEPG-AEDRFKEINRAYE 53

Length = 374

>gnl|CDD|237668 PRK14301, PRK14301, chaperone protein DnaJ; Provisional

 Score = 62.8 bits (153), Expect = 3e-13
 Identities = 24/53 (45%), Positives = 37/53 (69%)

Query: 33 PKDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAYQ 85
           +DYY++L V  DA+E+EI+  Y +LAL++HPD+  D   A  +F+E  EAY+
Sbjct: 3  QRDYYEVLGVSRDASEDEIKKAYRKLALQYHPDRNPDNPEAEQKFKEAAEAYE 55

Length = 373

>gnl|CDD|237658 PRK14284, PRK14284, chaperone protein DnaJ; Provisional

 Score = 62.9 bits (153), Expect = 3e-13
 Identities = 25/51 (49%), Positives = 34/51 (66%)

Query: 35 DYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAYQ 85
          DYY IL V   A+ EEI+  Y +LA+K+HPDK      A  RF+E++EAY+
Sbjct: 2  DYYTILGVSKTASPEEIKKAYRKLAVKYHPDKNPGDAEAEKRFKEVSEAYE 52

Length = 391

>gnl|CDD|237654 PRK14278, PRK14278, chaperone protein DnaJ; Provisional

 Score = 61.6 bits (150), Expect = 8e-13
 Identities = 21/52 (40%), Positives = 34/52 (65%), Gaps = 1/52 (1%)

Query: 34 KDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAYQ 85
          +DYY +L V  +A++ EI+  Y +LA + HPD   D + A  +F+EI+ AY+
Sbjct: 3  RDYYGLLGVSRNASDAEIKRAYRKLARELHPDVNPD-EEAQEKFKEISVAYE 53

Length = 378

>gnl|CDD|237662 PRK14292, PRK14292, chaperone protein DnaJ; Provisional

 Score = 61.8 bits (150), Expect = 8e-13
 Identities = 25/50 (50%), Positives = 37/50 (74%), Gaps = 1/50 (2%)

Query: 35 DYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAY 84
          DYY++L V   A+ +EI+S Y +LALK+HPD+ K++  A  +F +INEAY
Sbjct: 3  DYYELLGVSRTASADEIKSAYRKLALKYHPDRNKEKG-AAEKFAQINEAY 51

Length = 371

>gnl|CDD|184604 PRK14283, PRK14283, chaperone protein DnaJ; Provisional

 Score = 61.8 bits (150), Expect = 8e-13
 Identities = 24/55 (43%), Positives = 40/55 (72%), Gaps = 1/55 (1%)

Query: 30 LAKPKDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAY 84
          +A+ +DYY++L VD +A ++EI+  Y +LA K+HPD  ++   A  +F+EI+EAY
Sbjct: 1  MAEKRDYYEVLGVDRNADKKEIKKAYRKLARKYHPDVSEEEG-AEEKFKEISEAY 54

Length = 378

>gnl|CDD|237664 PRK14294, PRK14294, chaperone protein DnaJ; Provisional

 Score = 60.9 bits (148), Expect = 1e-12
 Identities = 25/52 (48%), Positives = 36/52 (69%)

Query: 34 KDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAYQ 85
          +DYY+IL V  DA+EEEI+ +Y +LA+K+HPD+      A   F+E  EAY+
Sbjct: 4  RDYYEILGVTRDASEEEIKKSYRKLAMKYHPDRNPGDKEAEELFKEAAEAYE 55

Length = 366

>gnl|CDD|237653 PRK14276, PRK14276, chaperone protein DnaJ; Provisional

 Score = 59.3 bits (144), Expect = 5e-12
 Identities = 20/52 (38%), Positives = 34/52 (65%), Gaps = 1/52 (1%)

Query: 34 KDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAYQ 85
           +YY  L V  DA+++EI+  Y +L+ K+HPD  K+   A  +++E+ EAY+
Sbjct: 4  TEYYDRLGVSKDASQDEIKKAYRKLSKKYHPDINKEPG-AEEKYKEVQEAYE 54

Length = 380

>gnl|CDD|172778 PRK14290, PRK14290, chaperone protein DnaJ; Provisional

 Score = 58.8 bits (142), Expect = 8e-12
 Identities = 26/53 (49%), Positives = 37/53 (69%), Gaps = 1/53 (1%)

Query: 34 KDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKD-RDCATSRFQEINEAYQ 85
          KDYYKIL VD +A++E+I+  +  LA KWHPD     +  A  +F+EI+EAY+
Sbjct: 3  KDYYKILGVDRNASQEDIKKAFRELAKKWHPDLHPGNKAEAEEKFKEISEAYE 55

Length = 365

>gnl|CDD|237655 PRK14279, PRK14279, chaperone protein DnaJ; Provisional

 Score = 58.2 bits (141), Expect = 1e-11
 Identities = 22/51 (43%), Positives = 31/51 (60%)

Query: 34 KDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAY 84
          KD+YK L V  DA+ EEI+  Y +LA + HPD       A  RF+ ++EA+
Sbjct: 9  KDFYKELGVSSDASAEEIKKAYRKLARELHPDANPGDPAAEERFKAVSEAH 59

Length = 392

>gnl|CDD|237656 PRK14280, PRK14280, chaperone protein DnaJ; Provisional

 Score = 58.2 bits (141), Expect = 1e-11
 Identities = 22/52 (42%), Positives = 37/52 (71%), Gaps = 1/52 (1%)

Query: 34 KDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAYQ 85
          +DYY++L V   A+++EI+  Y +L+ K+HPD  K+   A  +F+EI+EAY+
Sbjct: 4  RDYYEVLGVSKSASKDEIKKAYRKLSKKYHPDINKEEG-ADEKFKEISEAYE 54

Length = 376

>gnl|CDD|172774 PRK14286, PRK14286, chaperone protein DnaJ; Provisional

 Score = 57.7 bits (139), Expect = 2e-11
 Identities = 24/52 (46%), Positives = 34/52 (65%)

Query: 34 KDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAYQ 85
          + YY IL V   A +EEI+S Y +LA+K+HPDK K    +  +F+E  EAY+
Sbjct: 4  RSYYDILGVSKSANDEEIKSAYRKLAIKYHPDKNKGNKESEEKFKEATEAYE 55

Length = 372

>gnl|CDD|237660 PRK14289, PRK14289, chaperone protein DnaJ; Provisional

 Score = 56.8 bits (137), Expect = 4e-11
 Identities = 22/55 (40%), Positives = 35/55 (63%)

Query: 30 LAKPKDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAY 84
          +A+ +DYY++L V   AT +EI+  Y + A+++HPDK      A  +F+E  EAY
Sbjct: 1  MAEKRDYYEVLGVSKTATVDEIKKAYRKKAIQYHPDKNPGDKEAEEKFKEAAEAY 55

Length = 386

>gnl|CDD|237666 PRK14296, PRK14296, chaperone protein DnaJ; Provisional

 Score = 55.7 bits (134), Expect = 1e-10
 Identities = 26/52 (50%), Positives = 34/52 (65%), Gaps = 1/52 (1%)

Query: 32 KPKDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEA 83
          K KDYY++L V   A+E+EIR  Y +LA ++HPD  K  D A  +  EINEA
Sbjct: 2  KKKDYYEVLGVSKTASEQEIRQAYRKLAKQYHPDLNKSPD-AHDKMVEINEA 52

Length = 372

>gnl|CDD|172773 PRK14285, PRK14285, chaperone protein DnaJ; Provisional

 Score = 54.6 bits (131), Expect = 2e-10
 Identities = 23/52 (44%), Positives = 36/52 (69%)

Query: 34 KDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAYQ 85
          +DYY+IL +   A+++EI+  Y ++A+K+HPDK K    A S F+E  EAY+
Sbjct: 3  RDYYEILGLSKGASKDEIKKAYRKIAIKYHPDKNKGNKEAESIFKEATEAYE 54

Length = 365

>gnl|CDD|237659 PRK14287, PRK14287, chaperone protein DnaJ; Provisional

 Score = 54.2 bits (130), Expect = 4e-10
 Identities = 23/51 (45%), Positives = 36/51 (70%), Gaps = 1/51 (1%)

Query: 34 KDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAY 84
          +DYY++L VD +A+ +E++  Y +LA K+HPD  K  D A  +F+E+ EAY
Sbjct: 4  RDYYEVLGVDRNASVDEVKKAYRKLARKYHPDVNKAPD-AEDKFKEVKEAY 53

Length = 371

>gnl|CDD|225124 COG2214, CbpA, DnaJ-class molecular chaperone [Posttranslational modification, protein turnover, chaperones]

 Score = 52.9 bits (126), Expect = 8e-10
 Identities = 27/53 (50%), Positives = 37/53 (69%), Gaps = 1/53 (1%)

Query: 34 KDYYKILEVDYDATEEEIRSNYIRLALKWHPDK-QKDRDCATSRFQEINEAYQ 85
           DYY+IL V  +A+ EEI+  Y +LALK+HPD+   D   A  +F+EINEAY+
Sbjct: 6  LDYYEILGVPPNASLEEIKKAYRKLALKYHPDRNPGDPKVAEEKFKEINEAYE 58

Length = 237

>gnl|CDD|182347 PRK10266, PRK10266, curved DNA-binding protein CbpA; Provisional

 Score = 52.9 bits (127), Expect = 1e-09
 Identities = 23/52 (44%), Positives = 34/52 (65%), Gaps = 1/52 (1%)

Query: 34 KDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAYQ 85
          KDYY I+ V      + I++ Y RLA K+HPD  K+ D A +RF+E+ EA++
Sbjct: 4  KDYYAIMGVKPTDDLKTIKTAYRRLARKYHPDVSKEPD-AEARFKEVAEAWE 54

Length = 306

>gnl|CDD|240236 PTZ00037, PTZ00037, DnaJ_C chaperone protein; Provisional

 Score = 51.4 bits (123), Expect = 4e-09
 Identities = 20/52 (38%), Positives = 32/52 (61%), Gaps = 4/52 (7%)

Query: 34 KDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAYQ 85
          +  Y++L +  D T  EI+  Y +LA+K HPDK  D +    +F+EI+ AY+
Sbjct: 28 EKLYEVLNLSKDCTTSEIKKAYRKLAIKHHPDKGGDPE----KFKEISRAYE 75

Length = 421

>gnl|CDD|234368 TIGR03835, termin_org_DnaJ, terminal organelle assembly protein TopJ

 Score = 51.4 bits (122), Expect = 4e-09
 Identities = 26/52 (50%), Positives = 36/52 (69%), Gaps = 1/52 (1%)

Query: 34 KDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAYQ 85
          +DYY++L +D DA E+EI+  + +LA K+HPD+ K  D A S F EINEA  
Sbjct: 2  RDYYEVLGIDRDADEQEIKKAFRKLAKKYHPDRNKAPD-AASIFAEINEAND 52

This model describes TopJ (MG_200, CbpA), a DnaJ homolog and probable assembly protein of the Mycoplasma terminal organelle. The terminal organelle is involved in both cytadherence and gliding motility [Cellular processes, Chemotaxis and motility]. Length = 871

>gnl|CDD|172776 PRK14288, PRK14288, chaperone protein DnaJ; Provisional

 Score = 50.8 bits (121), Expect = 6e-09
 Identities = 23/49 (46%), Positives = 34/49 (69%)

Query: 36 YYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAY 84
          YY+ILEV+  + +E I+ +Y +LALK+HPD+      A  +F+ INEAY
Sbjct: 5  YYEILEVEKHSNQETIKKSYRKLALKYHPDRNAGDKEAEEKFKLINEAY 53

Length = 369

>gnl|CDD|172788 PRK14300, PRK14300, chaperone protein DnaJ; Provisional

 Score = 47.7 bits (113), Expect = 7e-08
 Identities = 21/52 (40%), Positives = 35/52 (67%), Gaps = 1/52 (1%)

Query: 34 KDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAYQ 85
          +DYY+IL V   A++ +++  Y++LA ++HPD    +D A  +F+EIN AY 
Sbjct: 3  QDYYQILGVSKTASQADLKKAYLKLAKQYHPDTTDAKD-AEKKFKEINAAYD 53

Length = 372

>gnl|CDD|227694 COG5407, SEC63, Preprotein translocase subunit Sec63 [Intracellular trafficking and secretion]

 Score = 40.3 bits (94), Expect = 3e-05
 Identities = 19/56 (33%), Positives = 32/56 (57%), Gaps = 5/56 (8%)

Query: 35  DYYKILEVDYDATEEEIRSNYIRLALKWHPDK-----QKDRDCATSRFQEINEAYQ 85
           D Y+IL +D D +E +I+  Y  L++K+HPDK      + R     +++ I +AY 
Sbjct: 99  DPYEILGIDQDTSERDIKKRYRMLSMKFHPDKAPPMVNELRSEYEEKYKTITKAYG 154

Length = 610

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	91
COG0484	371	DnaJ DnaJ-class molecular chaperone with C-termina	99.9
KOG0713	336	consensus Molecular chaperone (DnaJ superfamily) [	99.87
cd06257	55	DnaJ DnaJ domain or J-domain. DnaJ/Hsp40 (heat sho	99.83
PRK14288	369	chaperone protein DnaJ; Provisional	99.82
smart00271	60	DnaJ DnaJ molecular chaperone homology domain.	99.82
PRK14296	372	chaperone protein DnaJ; Provisional	99.8
PRK14286	372	chaperone protein DnaJ; Provisional	99.79
PRK14279	392	chaperone protein DnaJ; Provisional	99.79
PF00226	64	DnaJ: DnaJ domain; InterPro: IPR001623 The prokary	99.79
PRK14277	386	chaperone protein DnaJ; Provisional	99.78
PRK14285	365	chaperone protein DnaJ; Provisional	99.77
PRK14295	389	chaperone protein DnaJ; Provisional	99.77
PRK14282	369	chaperone protein DnaJ; Provisional	99.77
PRK14294	366	chaperone protein DnaJ; Provisional	99.76
PRK14283	378	chaperone protein DnaJ; Provisional	99.76
PRK14287	371	chaperone protein DnaJ; Provisional	99.76
KOG0712	337	consensus Molecular chaperone (DnaJ superfamily) [	99.76
PRK14299	291	chaperone protein DnaJ; Provisional	99.76
PRK14297	380	chaperone protein DnaJ; Provisional	99.76
PRK14301	373	chaperone protein DnaJ; Provisional	99.76
PRK10767	371	chaperone protein DnaJ; Provisional	99.76
PRK14298	377	chaperone protein DnaJ; Provisional	99.76
KOG0716	279	consensus Molecular chaperone (DnaJ superfamily) [	99.76
PRK14281	397	chaperone protein DnaJ; Provisional	99.75
PRK14276	380	chaperone protein DnaJ; Provisional	99.75
PRK14284	391	chaperone protein DnaJ; Provisional	99.75
PRK14278	378	chaperone protein DnaJ; Provisional	99.75
PTZ00037	421	DnaJ_C chaperone protein; Provisional	99.75
PRK14291	382	chaperone protein DnaJ; Provisional	99.75
PRK14280	376	chaperone protein DnaJ; Provisional	99.74
PRK14289	386	chaperone protein DnaJ; Provisional	99.73
PRK14290	365	chaperone protein DnaJ; Provisional	99.72
KOG0717	508	consensus Molecular chaperone (DnaJ superfamily) [	99.72
PRK10266	306	curved DNA-binding protein CbpA; Provisional	99.71
PRK14300	372	chaperone protein DnaJ; Provisional	99.71
TIGR02349	354	DnaJ_bact chaperone protein DnaJ. This model repre	99.71
KOG0691	296	consensus Molecular chaperone (DnaJ superfamily) [	99.71
KOG0715	288	consensus Molecular chaperone (DnaJ superfamily) [	99.7
KOG0721	230	consensus Molecular chaperone (DnaJ superfamily) [	99.7
PRK14293	374	chaperone protein DnaJ; Provisional	99.7
PRK14292	371	chaperone protein DnaJ; Provisional	99.69
COG2214	237	CbpA DnaJ-class molecular chaperone [Posttranslati	99.66
PTZ00341	1136	Ring-infected erythrocyte surface antigen; Provisi	99.66
PTZ00100	116	DnaJ chaperone protein; Provisional	99.65
PHA03102	153	Small T antigen; Reviewed	99.65
KOG0718	546	consensus Molecular chaperone (DnaJ superfamily) [	99.65
KOG0719	264	consensus Molecular chaperone (DnaJ superfamily) [	99.64
PRK09430	267	djlA Dna-J like membrane chaperone protein; Provis	99.63
PRK05014	171	hscB co-chaperone HscB; Provisional	99.59
TIGR03835	871	termin_org_DnaJ terminal organelle assembly protei	99.57
PRK01356	166	hscB co-chaperone HscB; Provisional	99.57
PRK03578	176	hscB co-chaperone HscB; Provisional	99.56
PRK00294	173	hscB co-chaperone HscB; Provisional	99.56
KOG0722	329	consensus Molecular chaperone (DnaJ superfamily) [	99.52
KOG0720	490	consensus Molecular chaperone (DnaJ superfamily) [	99.52
PHA02624	647	large T antigen; Provisional	99.46
KOG0624	504	consensus dsRNA-activated protein kinase inhibitor	99.34
PRK01773	173	hscB co-chaperone HscB; Provisional	99.33
KOG0550	486	consensus Molecular chaperone (DnaJ superfamily) [	99.32
KOG1150	250	consensus Predicted molecular chaperone (DnaJ supe	99.31
KOG0714	306	consensus Molecular chaperone (DnaJ superfamily) [	99.25
COG5407	610	SEC63 Preprotein translocase subunit Sec63 [Intrac	99.25
TIGR00714	157	hscB Fe-S protein assembly co-chaperone HscB. This	99.06
KOG0723	112	consensus Molecular chaperone (DnaJ superfamily) [	98.98
KOG0568	342	consensus Molecular chaperone (DnaJ superfamily) [	98.89
KOG1789	2235	consensus Endocytosis protein RME-8, contains DnaJ	98.87
COG5269	379	ZUO1 Ribosome-associated chaperone zuotin [Transla	98.66
KOG0431	453	consensus Auxilin-like protein and related protein	98.12
COG1076	174	DjlA DnaJ-domain-containing proteins 1 [Posttransl	98.0
KOG3192	168	consensus Mitochondrial J-type chaperone [Posttran	97.97
PF03656	127	Pam16: Pam16; InterPro: IPR005341 The Pam16 protei	97.05
COG1076	174	DjlA DnaJ-domain-containing proteins 1 [Posttransl	96.83
PF13446	62	RPT: A repeated domain in UCH-protein	94.23
PF14687	112	DUF4460: Domain of unknown function (DUF4460)	93.31
PF11833	194	DUF3353: Protein of unknown function (DUF3353); In	92.28
KOG0724	335	consensus Zuotin and related molecular chaperones	87.63
PF07709	14	SRR: Seven Residue Repeat; InterPro: IPR011714 Thi	81.0

>COG0484 DnaJ DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones]

Probab=99.90  E-value=8.8e-24  Score=154.12  Aligned_cols=59  Identities=46%  Similarity=0.731  Sum_probs=55.6

Q ss_pred             CCCCchhhhcCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHhcCC
Q 034568           32 KPKDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAYQGKRSL   90 (91)
Q Consensus        32 ~~~~~y~iLgl~~~a~~~~Ikkayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~~L~~~   90 (91)
                      ..+|||+||||+++|+.+|||+|||+||++||||++++.++|+++|++|++||++|+|-
T Consensus         2 ~~~dyYeiLGV~k~As~~EIKkAYRkLA~kyHPD~n~g~~~AeeKFKEI~eAYEVLsD~   60 (371)
T COG0484           2 AKRDYYEILGVSKDASEEEIKKAYRKLAKKYHPDRNPGDKEAEEKFKEINEAYEVLSDP   60 (371)
T ss_pred             CccchhhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHhCCH
Confidence            46799999999999999999999999999999999997677999999999999999983

>KOG0713 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.87  E-value=1.6e-22  Score=145.10  Aligned_cols=65  Identities=37%  Similarity=0.613  Sum_probs=60.2

Q ss_pred             hhhhhcCCCCchhhhcCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHhcCC
Q 034568           26 FLSLLAKPKDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAYQGKRSL   90 (91)
Q Consensus        26 ~~~~~~~~~~~y~iLgl~~~a~~~~Ikkayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~~L~~~   90 (91)
                      ....+...+|||+||||+.+|+..+||+|||+||+++|||||++.+.|.+.|+.|+.||++|+|.
T Consensus         8 ~~~~v~~~rDfYelLgV~k~Asd~eIKkAYRKLALk~HPDkNpddp~A~e~F~~in~AYEVLsDp   72 (336)
T KOG0713|consen    8 GAEAVLAGRDFYELLGVPKNASDQEIKKAYRKLALKYHPDKNPDDPNANEKFKEINAAYEVLSDP   72 (336)
T ss_pred             hhhhhhcCCCHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHhcCH
Confidence            34455567999999999999999999999999999999999999999999999999999999984

>cd06257 DnaJ DnaJ domain or J-domain

Probab=99.83  E-value=3.1e-20  Score=102.03  Aligned_cols=55  Identities=53%  Similarity=0.825  Sum_probs=51.7

Q ss_pred             CchhhhcCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHhcC
Q 034568           35 DYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAYQGKRS   89 (91)
Q Consensus        35 ~~y~iLgl~~~a~~~~Ikkayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~~L~~   89 (91)
                      |||+||||+++++.++||++||++++.+|||++++...+.+.|..|++||++|+|
T Consensus         1 ~~y~vLgl~~~~~~~~ik~~y~~l~~~~HPD~~~~~~~~~~~~~~l~~Ay~~L~d   55 (55)
T cd06257           1 DYYDILGVPPDASDEEIKKAYRKLALKYHPDKNPDDPEAEEKFKEINEAYEVLSD   55 (55)
T ss_pred             ChHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHhcC
Confidence            6899999999999999999999999999999998755589999999999999986

DnaJ/Hsp40 (heat shock protein 40) proteins are highly conserved and play crucial roles in protein translation, folding, unfolding, translocation, and degradation. They act primarily by stimulating the ATPase activity of Hsp70s, an important chaperonine family. Hsp40 proteins are characterized by the presence of a J domain, which mediates the interaction with Hsp70. They may contain other domains as well, and the architectures provide a means of classification.

>PRK14288 chaperone protein DnaJ; Provisional

Probab=99.82  E-value=1.7e-20  Score=137.40  Aligned_cols=58  Identities=40%  Similarity=0.651  Sum_probs=53.9

Q ss_pred             CCCchhhhcCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHhcCC
Q 034568           33 PKDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAYQGKRSL   90 (91)
Q Consensus        33 ~~~~y~iLgl~~~a~~~~Ikkayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~~L~~~   90 (91)
                      ..|||+||||+++|+.++||+|||+||++||||+++....|+++|++|++||++|+|.
T Consensus         2 ~~dyY~vLgv~~~As~~eIkkayrkla~k~HPD~~~~~~~a~~~f~~i~~AYevLsd~   59 (369)
T PRK14288          2 ELSYYEILEVEKHSNQETIKKSYRKLALKYHPDRNAGDKEAEEKFKLINEAYGVLSDE   59 (369)
T ss_pred             CCChHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCccHHHHHHHHHHHHHHHhccH
Confidence            3699999999999999999999999999999999986556899999999999999974

>smart00271 DnaJ DnaJ molecular chaperone homology domain

Probab=99.82  E-value=7.8e-20  Score=102.13  Aligned_cols=57  Identities=47%  Similarity=0.768  Sum_probs=52.9

Q ss_pred             CCchhhhcCCCCCCHHHHHHHHHHHHHHhCCCCCCC-chHHHHHHHHHHHHHHHhcCC
Q 034568           34 KDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKD-RDCATSRFQEINEAYQGKRSL   90 (91)
Q Consensus        34 ~~~y~iLgl~~~a~~~~Ikkayr~l~~~~HPDk~~~-~~~a~~~f~~i~~Ay~~L~~~   90 (91)
                      .++|+||||+++++.++||++|+++++.+|||++++ ...+.+.|..|++||++|++-
T Consensus         1 ~~~y~vLgl~~~~~~~~ik~ay~~l~~~~HPD~~~~~~~~~~~~~~~l~~Ay~~L~~~   58 (60)
T smart00271        1 TDYYEILGVPRDASLDEIKKAYRKLALKYHPDKNPGDKEEAEEKFKEINEAYEVLSDP   58 (60)
T ss_pred             CCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchHHHHHHHHHHHHHHHHHcCC
Confidence            479999999999999999999999999999999986 456899999999999999874

>PRK14296 chaperone protein DnaJ; Provisional

Probab=99.80  E-value=1.1e-19  Score=133.30  Aligned_cols=57  Identities=42%  Similarity=0.588  Sum_probs=53.2

Q ss_pred             CCCchhhhcCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHhcCC
Q 034568           33 PKDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAYQGKRSL   90 (91)
Q Consensus        33 ~~~~y~iLgl~~~a~~~~Ikkayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~~L~~~   90 (91)
                      ..|||+||||+++|+.++||+|||+||++||||+++++ .|+++|++|++||++|+|.
T Consensus         3 ~~dyY~~Lgv~~~a~~~eik~ayrkla~~~HPD~n~~~-~a~~~F~~i~~AyevLsD~   59 (372)
T PRK14296          3 KKDYYEVLGVSKTASEQEIRQAYRKLAKQYHPDLNKSP-DAHDKMVEINEAADVLLDK   59 (372)
T ss_pred             CCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCc-hHHHHHHHHHHHHHHhcCH
Confidence            46999999999999999999999999999999999764 5899999999999999984

>PRK14286 chaperone protein DnaJ; Provisional

Probab=99.79  E-value=2.1e-19  Score=131.80  Aligned_cols=58  Identities=43%  Similarity=0.719  Sum_probs=54.1

Q ss_pred             CCCchhhhcCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHhcCC
Q 034568           33 PKDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAYQGKRSL   90 (91)
Q Consensus        33 ~~~~y~iLgl~~~a~~~~Ikkayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~~L~~~   90 (91)
                      ..|||+||||+++|+.++||+|||+|+++||||++++...|+++|++|++||++|+|.
T Consensus         3 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~   60 (372)
T PRK14286          3 ERSYYDILGVSKSANDEEIKSAYRKLAIKYHPDKNKGNKESEEKFKEATEAYEILRDP   60 (372)
T ss_pred             CCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchHHHHHHHHHHHHHHHhccH
Confidence            4699999999999999999999999999999999987666899999999999999973

>PRK14279 chaperone protein DnaJ; Provisional

Probab=99.79  E-value=2.2e-19  Score=132.40  Aligned_cols=58  Identities=38%  Similarity=0.551  Sum_probs=54.5

Q ss_pred             CCCchhhhcCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHhcCC
Q 034568           33 PKDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAYQGKRSL   90 (91)
Q Consensus        33 ~~~~y~iLgl~~~a~~~~Ikkayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~~L~~~   90 (91)
                      ..|||+||||+++|+.++||+|||+|++++|||++++.+.|.++|++|++||++|+|.
T Consensus         8 ~~Dyy~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vLsD~   65 (392)
T PRK14279          8 EKDFYKELGVSSDASAEEIKKAYRKLARELHPDANPGDPAAEERFKAVSEAHDVLSDP   65 (392)
T ss_pred             ccCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCChHHHHHHHHHHHHHHHhcch
Confidence            4799999999999999999999999999999999987666899999999999999985

>PF00226 DnaJ: DnaJ domain; InterPro: IPR001623 The prokaryotic heat shock protein DnaJ interacts with the chaperone hsp70-like DnaK protein []

Probab=99.79  E-value=3.6e-19  Score=100.85  Aligned_cols=55  Identities=40%  Similarity=0.656  Sum_probs=51.5

Q ss_pred             CchhhhcCCCCCCHHHHHHHHHHHHHHhCCCCCCCch-HHHHHHHHHHHHHHHhcC
Q 034568           35 DYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRD-CATSRFQEINEAYQGKRS   89 (91)
Q Consensus        35 ~~y~iLgl~~~a~~~~Ikkayr~l~~~~HPDk~~~~~-~a~~~f~~i~~Ay~~L~~   89 (91)
                      |+|+||||+++++.++||++|+++++.+|||++++.. .+.+.|..|++||++|++
T Consensus         1 ~~y~iLgl~~~~~~~eik~~y~~l~~~~HPD~~~~~~~~~~~~~~~i~~Ay~~L~~   56 (64)
T PF00226_consen    1 NPYEILGLPPDASDEEIKKAYRRLSKQYHPDKNSGDEAEAEEKFARINEAYEILSD   56 (64)
T ss_dssp             HHHHHCTSTTTSSHHHHHHHHHHHHHHTSTTTGTSTHHHHHHHHHHHHHHHHHHHS
T ss_pred             ChHHHCCCCCCCCHHHHHHHHHhhhhccccccchhhhhhhhHHHHHHHHHHHHhCC
Confidence            5899999999999999999999999999999988764 688999999999999986

Structurally, the DnaJ protein consists of an N-terminal conserved domain (called 'J' domain) of about 70 amino acids, a glycine-rich region ('G' domain') of about 30 residues, a central domain containing four repeats of a CXXCXGXG motif ('CRR' domain) and a C-terminal region of 120 to 170 residues. Such a structure is shown in the following schematic representation: +------------+-+-------+-----+-----------+--------------------------------+ | N-terminal | | Gly-R | | CXXCXGXG | C-terminal | +------------+-+-------+-----+-----------+--------------------------------+ It is thought that the 'J' domain of DnaJ mediates the interaction with the dnaK protein and consists of four helices, the second of which has a charged surface that includes at least one pair of basic residues that are essential for interaction with the ATPase domain of Hsp70. The J- and CRR-domains are found in many prokaryotic and eukaryotic proteins [], either together or separately. In yeast, J-domains have been classified into 3 groups; the class III proteins are functionally distinct and do not appear to act as molecular chaperones []. ; GO: 0031072 heat shock protein binding; PDB: 2GUZ_C 2L6L_A 1HDJ_A 2EJ7_A 1FPO_C 2CUG_A 2QSA_A 2OCH_A 3BVO_B 3APQ_A ....

>PRK14277 chaperone protein DnaJ; Provisional

Probab=99.78  E-value=6.1e-19  Score=129.78  Aligned_cols=58  Identities=52%  Similarity=0.743  Sum_probs=54.2

Q ss_pred             CCCchhhhcCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHhcCC
Q 034568           33 PKDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAYQGKRSL   90 (91)
Q Consensus        33 ~~~~y~iLgl~~~a~~~~Ikkayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~~L~~~   90 (91)
                      ..|||+||||+++|+.++||+|||++++++|||++++...|+++|++|++||++|+|.
T Consensus         4 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~   61 (386)
T PRK14277          4 KKDYYEILGVDRNATEEEIKKAYRRLAKKYHPDLNPGDKEAEQKFKEINEAYEILSDP   61 (386)
T ss_pred             CCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCCCcCCCchHHHHHHHHHHHHHHHhCCH
Confidence            4699999999999999999999999999999999987666899999999999999974

>PRK14285 chaperone protein DnaJ; Provisional

Probab=99.77  E-value=5.7e-19  Score=129.21  Aligned_cols=57  Identities=40%  Similarity=0.669  Sum_probs=53.9

Q ss_pred             CCchhhhcCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHhcCC
Q 034568           34 KDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAYQGKRSL   90 (91)
Q Consensus        34 ~~~y~iLgl~~~a~~~~Ikkayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~~L~~~   90 (91)
                      .|||+||||+++|+.++||+|||+|++++|||++++.+.|.++|++|++||++|+|.
T Consensus         3 ~d~y~iLgv~~~a~~~eIk~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~   59 (365)
T PRK14285          3 RDYYEILGLSKGASKDEIKKAYRKIAIKYHPDKNKGNKEAESIFKEATEAYEVLIDD   59 (365)
T ss_pred             CCHHHhcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHcCc
Confidence            699999999999999999999999999999999987666899999999999999984

>PRK14295 chaperone protein DnaJ; Provisional

Probab=99.77  E-value=7.3e-19  Score=129.55  Aligned_cols=58  Identities=48%  Similarity=0.710  Sum_probs=54.2

Q ss_pred             CCCchhhhcCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHhcCC
Q 034568           33 PKDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAYQGKRSL   90 (91)
Q Consensus        33 ~~~~y~iLgl~~~a~~~~Ikkayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~~L~~~   90 (91)
                      ..|||+||||+++|+.++||+|||+|++++|||+++....|+++|++|++||++|+|-
T Consensus         8 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~   65 (389)
T PRK14295          8 EKDYYKVLGVPKDATEAEIKKAYRKLAREYHPDANKGDAKAEERFKEISEAYDVLSDE   65 (389)
T ss_pred             ccCHHHhcCCCCCCCHHHHHHHHHHHHHHHCCCcCCCchhHHHHHHHHHHHHHHHCch
Confidence            4699999999999999999999999999999999987666899999999999999974

>PRK14282 chaperone protein DnaJ; Provisional

Probab=99.77  E-value=1.1e-18  Score=127.71  Aligned_cols=58  Identities=45%  Similarity=0.779  Sum_probs=53.5

Q ss_pred             CCCchhhhcCCCCCCHHHHHHHHHHHHHHhCCCCCCCc-hHHHHHHHHHHHHHHHhcCC
Q 034568           33 PKDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDR-DCATSRFQEINEAYQGKRSL   90 (91)
Q Consensus        33 ~~~~y~iLgl~~~a~~~~Ikkayr~l~~~~HPDk~~~~-~~a~~~f~~i~~Ay~~L~~~   90 (91)
                      ..|||+||||+++|+.++||+|||+|+++||||+++.. ..|+++|++|++||++|+|.
T Consensus         3 ~~d~y~~lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~~a~~~f~~i~~Ay~vL~d~   61 (369)
T PRK14282          3 KKDYYEILGVSRNATQEEIKRAYKRLVKEWHPDRHPENRKEAEQKFKEIQEAYEVLSDP   61 (369)
T ss_pred             CCChHHhcCCCCCCCHHHHHHHHHHHHHHHCCCCCccchhHHHHHHHHHHHHHHHhcCh
Confidence            46999999999999999999999999999999998753 45899999999999999984

>PRK14294 chaperone protein DnaJ; Provisional

Probab=99.76  E-value=1.3e-18  Score=127.26  Aligned_cols=58  Identities=43%  Similarity=0.701  Sum_probs=54.3

Q ss_pred             CCCchhhhcCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHhcCC
Q 034568           33 PKDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAYQGKRSL   90 (91)
Q Consensus        33 ~~~~y~iLgl~~~a~~~~Ikkayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~~L~~~   90 (91)
                      ..|||+||||+++|+.++||+|||+|++++|||++++.+.+.++|+.|++||++|+|.
T Consensus         3 ~~d~y~~lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~~~~~f~~~~~Ay~vL~d~   60 (366)
T PRK14294          3 KRDYYEILGVTRDASEEEIKKSYRKLAMKYHPDRNPGDKEAEELFKEAAEAYEVLSDP   60 (366)
T ss_pred             CCChHHHhCCCCCCCHHHHHHHHHHHHHHHCCCCCCCchHHHHHHHHHHHHHHHhccH
Confidence            4799999999999999999999999999999999987666899999999999999973

>PRK14283 chaperone protein DnaJ; Provisional

Probab=99.76  E-value=1.1e-18  Score=128.18  Aligned_cols=58  Identities=40%  Similarity=0.702  Sum_probs=53.8

Q ss_pred             CCCCchhhhcCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHhcCC
Q 034568           32 KPKDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAYQGKRSL   90 (91)
Q Consensus        32 ~~~~~y~iLgl~~~a~~~~Ikkayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~~L~~~   90 (91)
                      ...|||+||||+++|+.++||+|||+|++++|||++++ +.|.++|++|++||++|+|.
T Consensus         3 ~~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~-~~a~~~f~~i~~Ay~~Lsd~   60 (378)
T PRK14283          3 EKRDYYEVLGVDRNADKKEIKKAYRKLARKYHPDVSEE-EGAEEKFKEISEAYAVLSDD   60 (378)
T ss_pred             CcCChHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCC-ccHHHHHHHHHHHHHHhchh
Confidence            35799999999999999999999999999999999986 45899999999999999984

>PRK14287 chaperone protein DnaJ; Provisional

Probab=99.76  E-value=1.3e-18  Score=127.58  Aligned_cols=57  Identities=39%  Similarity=0.696  Sum_probs=52.9

Q ss_pred             CCCchhhhcCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHhcCC
Q 034568           33 PKDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAYQGKRSL   90 (91)
Q Consensus        33 ~~~~y~iLgl~~~a~~~~Ikkayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~~L~~~   90 (91)
                      ..|||+||||+++|+.++||+|||+|++++|||+++.+ .++++|++|++||++|+|.
T Consensus         3 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HpD~~~~~-~~~~~f~~i~~Ay~~L~d~   59 (371)
T PRK14287          3 KRDYYEVLGVDRNASVDEVKKAYRKLARKYHPDVNKAP-DAEDKFKEVKEAYDTLSDP   59 (371)
T ss_pred             CCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCh-hHHHHHHHHHHHHHHhCcH
Confidence            46999999999999999999999999999999999764 5889999999999999974

>KOG0712 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.76  E-value=8.8e-19  Score=126.64  Aligned_cols=54  Identities=48%  Similarity=0.763  Sum_probs=52.0

Q ss_pred             CCCchhhhcCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHhcC
Q 034568           33 PKDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAYQGKRS   89 (91)
Q Consensus        33 ~~~~y~iLgl~~~a~~~~Ikkayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~~L~~   89 (91)
                      ...+|+||||+++|+.+|||+|||+|+++|||||+++   +.++|++|.+||++|+|
T Consensus         3 ~~~~y~il~v~~~As~~eikkayrkla~k~HpDkn~~---~~ekfkei~~AyevLsd   56 (337)
T KOG0712|consen    3 NTKLYDILGVSPDASEEEIKKAYRKLALKYHPDKNPD---AGEKFKEISQAYEVLSD   56 (337)
T ss_pred             ccccceeeccCCCcCHHHHHHHHHHHHHHhCCCCCcc---HHHHHHHHHHHHHHhcC
Confidence            5689999999999999999999999999999999998   78999999999999998

>PRK14299 chaperone protein DnaJ; Provisional

Probab=99.76  E-value=1.5e-18  Score=123.69  Aligned_cols=57  Identities=44%  Similarity=0.674  Sum_probs=52.8

Q ss_pred             CCCchhhhcCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHhcCC
Q 034568           33 PKDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAYQGKRSL   90 (91)
Q Consensus        33 ~~~~y~iLgl~~~a~~~~Ikkayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~~L~~~   90 (91)
                      ..|||+||||+++|+.++||+|||++++++|||+++.+ .+.++|+.|++||++|+|.
T Consensus         3 ~~d~y~vLgv~~~a~~~eik~ayr~la~~~HPD~~~~~-~~~~~f~~i~~Ay~~L~d~   59 (291)
T PRK14299          3 YKDYYAILGVPKNASQDEIKKAFKKLARKYHPDVNKSP-GAEEKFKEINEAYTVLSDP   59 (291)
T ss_pred             CCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCh-hHHHHHHHHHHHHHHhcCH
Confidence            46999999999999999999999999999999999754 4899999999999999973

>PRK14297 chaperone protein DnaJ; Provisional

Probab=99.76  E-value=1.6e-18  Score=127.34  Aligned_cols=58  Identities=43%  Similarity=0.763  Sum_probs=54.3

Q ss_pred             CCCchhhhcCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHhcCC
Q 034568           33 PKDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAYQGKRSL   90 (91)
Q Consensus        33 ~~~~y~iLgl~~~a~~~~Ikkayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~~L~~~   90 (91)
                      ..|||+||||+++|+.++||+|||+|+++||||++++.+.|+++|+.|++||++|+|.
T Consensus         3 ~~d~y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~   60 (380)
T PRK14297          3 SKDYYEVLGLEKGASDDEIKKAFRKLAIKYHPDKNKGNKEAEEKFKEINEAYQVLSDP   60 (380)
T ss_pred             CCChHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHhcCH
Confidence            3699999999999999999999999999999999987666899999999999999974

>PRK14301 chaperone protein DnaJ; Provisional

Probab=99.76  E-value=1.6e-18  Score=127.17  Aligned_cols=58  Identities=43%  Similarity=0.771  Sum_probs=54.2

Q ss_pred             CCCchhhhcCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHhcCC
Q 034568           33 PKDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAYQGKRSL   90 (91)
Q Consensus        33 ~~~~y~iLgl~~~a~~~~Ikkayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~~L~~~   90 (91)
                      ..|||+||||+++|+.++||+|||+|++++|||++++...|+++|++|++||++|+|.
T Consensus         3 ~~~~y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~   60 (373)
T PRK14301          3 QRDYYEVLGVSRDASEDEIKKAYRKLALQYHPDRNPDNPEAEQKFKEAAEAYEVLRDA   60 (373)
T ss_pred             CCChHHhcCCCCCCCHHHHHHHHHHHHHHhCCCcCCCChHHHHHHHHHHHHHHHhcch
Confidence            4699999999999999999999999999999999987666899999999999999974

>PRK10767 chaperone protein DnaJ; Provisional

Probab=99.76  E-value=1.8e-18  Score=126.66  Aligned_cols=58  Identities=40%  Similarity=0.734  Sum_probs=54.0

Q ss_pred             CCCchhhhcCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHhcCC
Q 034568           33 PKDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAYQGKRSL   90 (91)
Q Consensus        33 ~~~~y~iLgl~~~a~~~~Ikkayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~~L~~~   90 (91)
                      ..|||+||||+++|+.++||+|||+|++++|||++++...|.++|++|++||++|+|.
T Consensus         3 ~~d~y~iLgv~~~as~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~d~   60 (371)
T PRK10767          3 KRDYYEVLGVSRNASEDEIKKAYRKLAMKYHPDRNPGDKEAEEKFKEIKEAYEVLSDP   60 (371)
T ss_pred             CCChHHhcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCcHHHHHHHHHHHHHHHHhcch
Confidence            4699999999999999999999999999999999986666899999999999999874

>PRK14298 chaperone protein DnaJ; Provisional

Probab=99.76  E-value=1.6e-18  Score=127.34  Aligned_cols=57  Identities=44%  Similarity=0.756  Sum_probs=52.9

Q ss_pred             CCCchhhhcCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHhcCC
Q 034568           33 PKDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAYQGKRSL   90 (91)
Q Consensus        33 ~~~~y~iLgl~~~a~~~~Ikkayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~~L~~~   90 (91)
                      ..|||+||||+++|+.++||+|||+|++++|||+++.+ .+.++|++|++||++|+|-
T Consensus         4 ~~d~y~iLgv~~~a~~~eik~ayr~la~~~HPD~~~~~-~~~~~f~~i~~Ay~vL~d~   60 (377)
T PRK14298          4 TRDYYEILGLSKDASVEDIKKAYRKLAMKYHPDKNKEP-DAEEKFKEISEAYAVLSDA   60 (377)
T ss_pred             CCCHHHhhCCCCCCCHHHHHHHHHHHHHHhCccccCCh-hHHHHHHHHHHHHHHhcch
Confidence            46999999999999999999999999999999999764 4889999999999999974

>KOG0716 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.76  E-value=1.3e-18  Score=122.05  Aligned_cols=58  Identities=43%  Similarity=0.642  Sum_probs=55.0

Q ss_pred             CCCchhhhcCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHhcCC
Q 034568           33 PKDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAYQGKRSL   90 (91)
Q Consensus        33 ~~~~y~iLgl~~~a~~~~Ikkayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~~L~~~   90 (91)
                      ..++|+||||+++|+.++|||+||+|++++|||++++.+++.++|++||+||++|+|-
T Consensus        30 ~~~LYdVLgl~k~at~d~IKKaYR~L~~k~HPD~~gd~P~~~dkf~eIN~Ay~ILsD~   87 (279)
T KOG0716|consen   30 RLDLYDVLGLPKTATKDEIKKAYRKLALKYHPDKNGDNPEATDKFKEINTAYAILSDP   87 (279)
T ss_pred             hhHHHHHhCCCcccchHHHHHHHHHHHHHhCCCcCCCCchhHHHHHHHHHHHHHhcCh
Confidence            5689999999999999999999999999999999999777999999999999999984

>PRK14281 chaperone protein DnaJ; Provisional

Probab=99.75  E-value=1.9e-18  Score=127.58  Aligned_cols=57  Identities=44%  Similarity=0.750  Sum_probs=53.7

Q ss_pred             CCchhhhcCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHhcCC
Q 034568           34 KDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAYQGKRSL   90 (91)
Q Consensus        34 ~~~y~iLgl~~~a~~~~Ikkayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~~L~~~   90 (91)
                      .|||+||||+++|+.++||+|||+|++++|||++++...|.++|+.|++||++|+|.
T Consensus         3 ~d~y~iLgv~~~a~~~eikkayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~   59 (397)
T PRK14281          3 RDYYEVLGVSRSADKDEIKKAYRKLALKYHPDKNPDNKEAEEHFKEVNEAYEVLSND   59 (397)
T ss_pred             CChhhhcCCCCCCCHHHHHHHHHHHHHHHCCCcCCCchHHHHHHHHHHHHHHHhhhh
Confidence            599999999999999999999999999999999987666899999999999999973

>PRK14276 chaperone protein DnaJ; Provisional

Probab=99.75  E-value=2.2e-18  Score=126.62  Aligned_cols=57  Identities=35%  Similarity=0.652  Sum_probs=53.0

Q ss_pred             CCCchhhhcCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHhcCC
Q 034568           33 PKDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAYQGKRSL   90 (91)
Q Consensus        33 ~~~~y~iLgl~~~a~~~~Ikkayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~~L~~~   90 (91)
                      ..|||+||||+++|+.++||+|||+|++++|||+++++ .++++|++|++||++|+|-
T Consensus         3 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HpD~~~~~-~a~~~f~~i~~Ay~vL~d~   59 (380)
T PRK14276          3 NTEYYDRLGVSKDASQDEIKKAYRKLSKKYHPDINKEP-GAEEKYKEVQEAYETLSDP   59 (380)
T ss_pred             CCCHHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCCc-CHHHHHHHHHHHHHHhcCH
Confidence            46999999999999999999999999999999999864 4889999999999999973

>PRK14284 chaperone protein DnaJ; Provisional

Probab=99.75  E-value=2.4e-18  Score=126.82  Aligned_cols=57  Identities=44%  Similarity=0.697  Sum_probs=53.5

Q ss_pred             CCchhhhcCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHhcCC
Q 034568           34 KDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAYQGKRSL   90 (91)
Q Consensus        34 ~~~y~iLgl~~~a~~~~Ikkayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~~L~~~   90 (91)
                      .|||+||||+++|+.++||+|||++++++|||++++.+.+.++|+.|++||++|+|.
T Consensus         1 ~d~y~iLgv~~~a~~~eikkayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~   57 (391)
T PRK14284          1 MDYYTILGVSKTASPEEIKKAYRKLAVKYHPDKNPGDAEAEKRFKEVSEAYEVLSDA   57 (391)
T ss_pred             CCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchHHHHHHHHHHHHHHHhcCH
Confidence            389999999999999999999999999999999987667899999999999999973

>PRK14278 chaperone protein DnaJ; Provisional

Probab=99.75  E-value=2e-18  Score=126.80  Aligned_cols=56  Identities=38%  Similarity=0.640  Sum_probs=52.5

Q ss_pred             CCchhhhcCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHhcCC
Q 034568           34 KDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAYQGKRSL   90 (91)
Q Consensus        34 ~~~y~iLgl~~~a~~~~Ikkayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~~L~~~   90 (91)
                      .|||+||||+++|+.++||+|||+|++++|||++++ +.|+++|+.|++||++|+|.
T Consensus         3 ~d~y~iLgv~~~a~~~eik~ayr~la~~~hpD~~~~-~~a~~~f~~i~~Ay~vL~d~   58 (378)
T PRK14278          3 RDYYGLLGVSRNASDAEIKRAYRKLARELHPDVNPD-EEAQEKFKEISVAYEVLSDP   58 (378)
T ss_pred             CCcceecCCCCCCCHHHHHHHHHHHHHHHCCCCCCc-HHHHHHHHHHHHHHHHhchh
Confidence            589999999999999999999999999999999986 45889999999999999874

>PTZ00037 DnaJ_C chaperone protein; Provisional

Probab=99.75  E-value=2.1e-18  Score=128.28  Aligned_cols=54  Identities=37%  Similarity=0.646  Sum_probs=50.3

Q ss_pred             CCCchhhhcCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHhcCC
Q 034568           33 PKDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAYQGKRSL   90 (91)
Q Consensus        33 ~~~~y~iLgl~~~a~~~~Ikkayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~~L~~~   90 (91)
                      ..+||+||||+++|+.++||+|||+||+++|||++++    .++|++|++||++|+|.
T Consensus        27 ~~d~Y~vLGV~~~As~~eIKkAYrkla~k~HPDk~~~----~e~F~~i~~AYevLsD~   80 (421)
T PTZ00037         27 NEKLYEVLNLSKDCTTSEIKKAYRKLAIKHHPDKGGD----PEKFKEISRAYEVLSDP   80 (421)
T ss_pred             chhHHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCch----HHHHHHHHHHHHHhccH
Confidence            5799999999999999999999999999999999864    48999999999999974

>PRK14291 chaperone protein DnaJ; Provisional

Probab=99.75  E-value=2.9e-18  Score=126.06  Aligned_cols=57  Identities=53%  Similarity=0.754  Sum_probs=52.9

Q ss_pred             CCCchhhhcCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHhcCC
Q 034568           33 PKDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAYQGKRSL   90 (91)
Q Consensus        33 ~~~~y~iLgl~~~a~~~~Ikkayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~~L~~~   90 (91)
                      ..|||+||||+++|+.++||+|||+|++++|||+++++ .+.++|+.|++||++|+|-
T Consensus         2 ~~d~Y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~~-~~~~~f~~i~~Ay~vLsd~   58 (382)
T PRK14291          2 KKDYYEILGVSRNATQEEIKKAYRRLARKYHPDFNKNP-EAEEKFKEINEAYQVLSDP   58 (382)
T ss_pred             CCCHHHhhCCCCCCCHHHHHHHHHHHHHHHCCCCCCCc-cHHHHHHHHHHHHHHhcCH
Confidence            36999999999999999999999999999999999874 4889999999999999973

>PRK14280 chaperone protein DnaJ; Provisional

Probab=99.74  E-value=3.3e-18  Score=125.54  Aligned_cols=57  Identities=39%  Similarity=0.693  Sum_probs=52.9

Q ss_pred             CCCchhhhcCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHhcCC
Q 034568           33 PKDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAYQGKRSL   90 (91)
Q Consensus        33 ~~~~y~iLgl~~~a~~~~Ikkayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~~L~~~   90 (91)
                      ..|||+||||+++|+.++||+|||+|++++|||+++.+ .|.++|++|++||++|+|-
T Consensus         3 ~~~~y~iLgv~~~a~~~eik~ayr~la~~~HpD~~~~~-~a~~~f~~i~~Ay~vL~d~   59 (376)
T PRK14280          3 KRDYYEVLGVSKSASKDEIKKAYRKLSKKYHPDINKEE-GADEKFKEISEAYEVLSDD   59 (376)
T ss_pred             CCChHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCCc-cHHHHHHHHHHHHHHhccH
Confidence            36999999999999999999999999999999999864 4899999999999999973

>PRK14289 chaperone protein DnaJ; Provisional

Probab=99.73  E-value=9.5e-18  Score=123.43  Aligned_cols=58  Identities=36%  Similarity=0.614  Sum_probs=54.5

Q ss_pred             CCCchhhhcCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHhcCC
Q 034568           33 PKDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAYQGKRSL   90 (91)
Q Consensus        33 ~~~~y~iLgl~~~a~~~~Ikkayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~~L~~~   90 (91)
                      ..|||+||||+++|+.+|||+|||++++++|||++++.+.+.++|+.|++||++|+|.
T Consensus         4 ~~~~y~~Lgv~~~a~~~eik~ayr~la~~~HpD~~~~~~~a~~~f~~i~~Ay~~L~d~   61 (386)
T PRK14289          4 KRDYYEVLGVSKTATVDEIKKAYRKKAIQYHPDKNPGDKEAEEKFKEAAEAYDVLSDP   61 (386)
T ss_pred             cCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCChHHHHHHHHHHHHHHHhcCH
Confidence            4699999999999999999999999999999999987767999999999999999973

>PRK14290 chaperone protein DnaJ; Provisional

Probab=99.72  E-value=1e-17  Score=122.56  Aligned_cols=57  Identities=46%  Similarity=0.764  Sum_probs=53.1

Q ss_pred             CCchhhhcCCCCCCHHHHHHHHHHHHHHhCCCCCCCch-HHHHHHHHHHHHHHHhcCC
Q 034568           34 KDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRD-CATSRFQEINEAYQGKRSL   90 (91)
Q Consensus        34 ~~~y~iLgl~~~a~~~~Ikkayr~l~~~~HPDk~~~~~-~a~~~f~~i~~Ay~~L~~~   90 (91)
                      .|||+||||+++|+.++||+|||+|++++|||+++... .|.++|+.|++||++|+|.
T Consensus         3 ~d~y~vLgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~~a~~~f~~i~~Ay~~L~d~   60 (365)
T PRK14290          3 KDYYKILGVDRNASQEDIKKAFRELAKKWHPDLHPGNKAEAEEKFKEISEAYEVLSDP   60 (365)
T ss_pred             CChhhhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchhHHHHHHHHHHHHHHHhcCh
Confidence            59999999999999999999999999999999987653 6899999999999999984

>KOG0717 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.72  E-value=8.7e-18  Score=124.78  Aligned_cols=58  Identities=47%  Similarity=0.781  Sum_probs=53.8

Q ss_pred             CCCCchhhhcCCCCCCHHHHHHHHHHHHHHhCCCCCCCc-hHHHHHHHHHHHHHHHhcC
Q 034568           32 KPKDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDR-DCATSRFQEINEAYQGKRS   89 (91)
Q Consensus        32 ~~~~~y~iLgl~~~a~~~~Ikkayr~l~~~~HPDk~~~~-~~a~~~f~~i~~Ay~~L~~   89 (91)
                      ..+.||+||||..++++.+||++||+||+++|||+++.. ++++++|+.|+.||+||+|
T Consensus         6 ~~~c~YE~L~v~~~a~d~eik~~YRklALq~HPDknpd~ieeat~~F~~i~aAYeVLSd   64 (508)
T KOG0717|consen    6 KKRCYYEVLGVERDADDDEIKKNYRKLALQYHPDKNPDRIEEATQQFQLIQAAYEVLSD   64 (508)
T ss_pred             hhhHHHHHhcccccCCHHHHHHHHHHHHHhhCCCCCCccHHHHHHHHHHHHHHHHHhcC
Confidence            356899999999999999999999999999999997665 6799999999999999997

>PRK10266 curved DNA-binding protein CbpA; Provisional

Probab=99.71  E-value=1.8e-17  Score=118.82  Aligned_cols=56  Identities=39%  Similarity=0.613  Sum_probs=52.3

Q ss_pred             CCchhhhcCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHhcCC
Q 034568           34 KDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAYQGKRSL   90 (91)
Q Consensus        34 ~~~y~iLgl~~~a~~~~Ikkayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~~L~~~   90 (91)
                      .|||+||||++.++.++||+|||+|++++|||+++.+ .+.++|++|++||++|+|.
T Consensus         4 ~d~y~~Lgv~~~a~~~eik~ayr~la~k~HPD~~~~~-~~~~~f~~i~~Ay~~L~~~   59 (306)
T PRK10266          4 KDYYAIMGVKPTDDLKTIKTAYRRLARKYHPDVSKEP-DAEARFKEVAEAWEVLSDE   59 (306)
T ss_pred             CChHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCc-cHHHHHHHHHHHHHHhhhH
Confidence            6999999999999999999999999999999998764 4899999999999999873

>PRK14300 chaperone protein DnaJ; Provisional

Probab=99.71  E-value=1.6e-17  Score=121.83  Aligned_cols=56  Identities=36%  Similarity=0.704  Sum_probs=51.9

Q ss_pred             CCchhhhcCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHhcCC
Q 034568           34 KDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAYQGKRSL   90 (91)
Q Consensus        34 ~~~y~iLgl~~~a~~~~Ikkayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~~L~~~   90 (91)
                      .|||+||||+++|+.++||+|||++++++|||+++.+ .++++|++|++||++|+|.
T Consensus         3 ~~~y~iLgv~~~as~~eik~ayr~la~~~HPD~~~~~-~~~~~f~~i~~Ay~~L~d~   58 (372)
T PRK14300          3 QDYYQILGVSKTASQADLKKAYLKLAKQYHPDTTDAK-DAEKKFKEINAAYDVLKDE   58 (372)
T ss_pred             CChHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCc-CHHHHHHHHHHHHHHhhhH
Confidence            5999999999999999999999999999999998753 4889999999999999973

>TIGR02349 DnaJ_bact chaperone protein DnaJ

Probab=99.71  E-value=1.5e-17  Score=121.00  Aligned_cols=55  Identities=53%  Similarity=0.826  Sum_probs=51.1

Q ss_pred             CchhhhcCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHhcCC
Q 034568           35 DYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAYQGKRSL   90 (91)
Q Consensus        35 ~~y~iLgl~~~a~~~~Ikkayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~~L~~~   90 (91)
                      |||+||||+++|+.++||+|||++++++|||+++. ..+.++|+.|++||++|+|.
T Consensus         1 d~y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~-~~~~~~f~~i~~Ay~vL~d~   55 (354)
T TIGR02349         1 DYYEILGVSKDASEEEIKKAYRKLAKKYHPDRNKD-KEAEEKFKEINEAYEVLSDP   55 (354)
T ss_pred             ChHHhCCCCCCCCHHHHHHHHHHHHHHHCCCCCCC-ccHHHHHHHHHHHHHHhhCh
Confidence            69999999999999999999999999999999974 34889999999999999974

This model represents bacterial forms of DnaJ, part of the DnaK-DnaJ-GrpE chaperone system. The three components typically are encoded by consecutive genes. DnaJ homologs occur in many genomes, typically not near DnaK and GrpE-like genes; most such genes are not included by this family. Eukaryotic (mitochondrial and chloroplast) forms are not included in the scope of this family.

>KOG0691 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.71  E-value=1.8e-17  Score=118.39  Aligned_cols=58  Identities=40%  Similarity=0.669  Sum_probs=55.7

Q ss_pred             CCCchhhhcCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHhcCC
Q 034568           33 PKDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAYQGKRSL   90 (91)
Q Consensus        33 ~~~~y~iLgl~~~a~~~~Ikkayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~~L~~~   90 (91)
                      ..|||.||||+..++..+|++|||..++++|||||++.+.|.+.|+.+.+||++|.|.
T Consensus         4 ~~dyY~lLgi~~~at~~eIkKaYr~kaL~~HPDKNp~dP~A~ekFq~L~eAy~VL~D~   61 (296)
T KOG0691|consen    4 DTDYYDLLGISEDATDAEIKKAYRKKALQYHPDKNPGDPQAAEKFQELSEAYEVLSDE   61 (296)
T ss_pred             cchHHHHhCCCCCCCHHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHHHHHHhcCH
Confidence            5699999999999999999999999999999999999888999999999999999974

>KOG0715 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.70  E-value=2.2e-17  Score=117.83  Aligned_cols=56  Identities=46%  Similarity=0.725  Sum_probs=53.4

Q ss_pred             CCchhhhcCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHhcCC
Q 034568           34 KDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAYQGKRSL   90 (91)
Q Consensus        34 ~~~y~iLgl~~~a~~~~Ikkayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~~L~~~   90 (91)
                      .|||+||||+++|+..|||+||++|+++||||.+..+ ++.++|++|.+||++|++.
T Consensus        43 ~d~Y~vLgv~~~At~~EIK~Af~~LaKkyHPD~n~~~-~a~~kF~eI~~AYEiLsd~   98 (288)
T KOG0715|consen   43 EDYYKVLGVSRNATLSEIKSAFRKLAKKYHPDVNKDK-EASKKFKEISEAYEILSDE   98 (288)
T ss_pred             cchhhhhCcCCCCCHHHHHHHHHHHHHhhCCCCCCCc-chhhHHHHHHHHHHHhcCH
Confidence            3999999999999999999999999999999999997 5999999999999999974

>KOG0721 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.70  E-value=3.3e-17  Score=112.08  Aligned_cols=60  Identities=38%  Similarity=0.590  Sum_probs=55.4

Q ss_pred             cCCCCchhhhcCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHhcCC
Q 034568           31 AKPKDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAYQGKRSL   90 (91)
Q Consensus        31 ~~~~~~y~iLgl~~~a~~~~Ikkayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~~L~~~   90 (91)
                      ....|||+||||+++++..|||++||+|++++||||++.+.+.++.|..|.+||+.|+|.
T Consensus        96 ~~~fDPyEILGl~pgas~~eIKkaYR~LSik~HPDK~~~~~~~e~~~~~I~KAY~aLTD~  155 (230)
T KOG0721|consen   96 RQKFDPYEILGLDPGASEKEIKKAYRRLSIKYHPDKQPPEEGDEEFFEAIAKAYQALTDK  155 (230)
T ss_pred             hhcCCcHHhhCCCCCCCHHHHHHHHHHhhhhhCCCcCCCcchhHHHHHHHHHHHHHhcch
Confidence            356799999999999999999999999999999999988767889999999999999874

>PRK14293 chaperone protein DnaJ; Provisional

Probab=99.70  E-value=3.6e-17  Score=120.02  Aligned_cols=56  Identities=46%  Similarity=0.739  Sum_probs=52.3

Q ss_pred             CCchhhhcCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHhcCC
Q 034568           34 KDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAYQGKRSL   90 (91)
Q Consensus        34 ~~~y~iLgl~~~a~~~~Ikkayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~~L~~~   90 (91)
                      .|||+||||+++++.++||+|||++++++|||+++.+ .+.++|+.|++||++|+|.
T Consensus         3 ~d~y~vLgv~~~a~~~eik~ayr~la~~~HPD~~~~~-~a~~~f~~i~~Ay~vL~~~   58 (374)
T PRK14293          3 ADYYEILGVSRDADKDELKRAYRRLARKYHPDVNKEP-GAEDRFKEINRAYEVLSDP   58 (374)
T ss_pred             CChhhhcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCc-CHHHHHHHHHHHHHHHhch
Confidence            5999999999999999999999999999999998764 4889999999999999974

>PRK14292 chaperone protein DnaJ; Provisional

Probab=99.69  E-value=4.1e-17  Score=119.50  Aligned_cols=56  Identities=45%  Similarity=0.777  Sum_probs=52.2

Q ss_pred             CCchhhhcCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHhcCC
Q 034568           34 KDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAYQGKRSL   90 (91)
Q Consensus        34 ~~~y~iLgl~~~a~~~~Ikkayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~~L~~~   90 (91)
                      .|||+||||+++|+.++||+|||++++++|||+++.+ .+.++|+.|++||++|+|.
T Consensus         2 ~d~y~~Lgv~~~a~~~~ik~ayr~l~~~~hpD~~~~~-~a~~~~~~i~~Ay~vL~d~   57 (371)
T PRK14292          2 MDYYELLGVSRTASADEIKSAYRKLALKYHPDRNKEK-GAAEKFAQINEAYAVLSDA   57 (371)
T ss_pred             CChHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCh-hHHHHHHHHHHHHHHhcch
Confidence            4899999999999999999999999999999999864 5899999999999999974

>COG2214 CbpA DnaJ-class molecular chaperone [Posttranslational modification, protein turnover, chaperones]

Probab=99.66  E-value=2.1e-16  Score=105.13  Aligned_cols=59  Identities=44%  Similarity=0.659  Sum_probs=55.0

Q ss_pred             CCCCchhhhcCCCCCCHHHHHHHHHHHHHHhCCCCCCCchH-HHHHHHHHHHHHHHhcCC
Q 034568           32 KPKDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRDC-ATSRFQEINEAYQGKRSL   90 (91)
Q Consensus        32 ~~~~~y~iLgl~~~a~~~~Ikkayr~l~~~~HPDk~~~~~~-a~~~f~~i~~Ay~~L~~~   90 (91)
                      ...++|+||||+++++..+|+++||++++++|||+++.... +.+.|..|++||++|++.
T Consensus         4 ~~~~~y~iLgv~~~as~~eik~ayrkla~~~HPD~~~~~~~~a~~~f~~i~~Ay~vLsd~   63 (237)
T COG2214           4 DLLDYYEILGVPPNASLEEIKKAYRKLALKYHPDRNPGDPKVAEEKFKEINEAYEILSDP   63 (237)
T ss_pred             hhhhHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchhHHHHHHHHHHHHHHHhhCH
Confidence            45689999999999999999999999999999999998774 899999999999999974

>PTZ00341 Ring-infected erythrocyte surface antigen; Provisional

Probab=99.66  E-value=2.1e-16  Score=125.62  Aligned_cols=59  Identities=32%  Similarity=0.487  Sum_probs=54.6

Q ss_pred             cCCCCchhhhcCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHhcCC
Q 034568           31 AKPKDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAYQGKRSL   90 (91)
Q Consensus        31 ~~~~~~y~iLgl~~~a~~~~Ikkayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~~L~~~   90 (91)
                      ....+||+||||+++|+..+||+|||+||+++|||+++++ .|.++|+.|++||++|+|-
T Consensus       570 ~~d~dYYdILGVs~dAS~~EIKKAYRKLAlkyHPDKN~~~-~A~ekFq~I~EAYeVLSDp  628 (1136)
T PTZ00341        570 IPDTLFYDILGVGVNADMKEISERYFKLAENYYPPKRSGN-EGFHKFKKINEAYQILGDI  628 (1136)
T ss_pred             CCCCChHHHcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCc-hHHHHHHHHHHHHHHhCCH
Confidence            3467999999999999999999999999999999999886 4889999999999999984

>PTZ00100 DnaJ chaperone protein; Provisional

Probab=99.65  E-value=1.9e-16  Score=99.64  Aligned_cols=54  Identities=31%  Similarity=0.370  Sum_probs=48.7

Q ss_pred             CCCCchhhhcCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHhcC
Q 034568           32 KPKDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAYQGKRS   89 (91)
Q Consensus        32 ~~~~~y~iLgl~~~a~~~~Ikkayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~~L~~   89 (91)
                      ...++|+||||+++++.++||++||++++++|||+.++    .+.|++|++||++|.+
T Consensus        63 s~~eAy~ILGv~~~As~~eIkkaYRrLa~~~HPDkgGs----~~~~~kIneAyevL~k  116 (116)
T PTZ00100         63 SKSEAYKILNISPTASKERIREAHKQLMLRNHPDNGGS----TYIASKVNEAKDLLLK  116 (116)
T ss_pred             CHHHHHHHcCCCCCCCHHHHHHHHHHHHHHhCCCCCCC----HHHHHHHHHHHHHHhC
Confidence            45799999999999999999999999999999999654    5789999999999963

>PHA03102 Small T antigen; Reviewed

Probab=99.65  E-value=2.7e-16  Score=103.25  Aligned_cols=53  Identities=30%  Similarity=0.535  Sum_probs=48.5

Q ss_pred             CCchhhhcCCCCC--CHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHhcCC
Q 034568           34 KDYYKILEVDYDA--TEEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAYQGKRSL   90 (91)
Q Consensus        34 ~~~y~iLgl~~~a--~~~~Ikkayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~~L~~~   90 (91)
                      ..+|+||||+++|  +.++||+|||++++++|||++++    .++|+.|++||++|++.
T Consensus         5 ~~l~~vLGl~~~A~~s~~eIKkAYr~la~~~HPDkgg~----~e~~k~in~Ay~~L~d~   59 (153)
T PHA03102          5 KELMDLLGLPRSAWGNLPLMRKAYLRKCLEFHPDKGGD----EEKMKELNTLYKKFRES   59 (153)
T ss_pred             HHHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCch----hHHHHHHHHHHHHHhhH
Confidence            4689999999999  99999999999999999999754    57999999999999863

>KOG0718 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.65  E-value=2.5e-16  Score=117.41  Aligned_cols=58  Identities=38%  Similarity=0.633  Sum_probs=54.0

Q ss_pred             CCCCchhhhcCCCCCCHHHHHHHHHHHHHHhCCCCCCCc---hHHHHHHHHHHHHHHHhcC
Q 034568           32 KPKDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDR---DCATSRFQEINEAYQGKRS   89 (91)
Q Consensus        32 ~~~~~y~iLgl~~~a~~~~Ikkayr~l~~~~HPDk~~~~---~~a~~~f~~i~~Ay~~L~~   89 (91)
                      .+.++|.+|+||++|+.+||++|||++++.|||||..++   ..|++.|++|.+||++|+|
T Consensus         7 ~e~e~Ya~LNlpkdAt~eeI~~AYrr~~~lfHPDkh~dpd~K~~AE~~F~~i~~AyEVLsD   67 (546)
T KOG0718|consen    7 DEIELYALLNLPKDATDEEIKKAYRRLSRLFHPDKHTDPDQKKAAEEKFQRIQRAYEVLSD   67 (546)
T ss_pred             chhhHHHHhCCCcccCHHHHHHHHHHHHHhcCCcccCChhHHHHHHHHHHHHHHHHHHhcC
Confidence            456899999999999999999999999999999999876   3589999999999999997

>KOG0719 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.64  E-value=3e-16  Score=108.54  Aligned_cols=58  Identities=47%  Similarity=0.740  Sum_probs=53.2

Q ss_pred             CCCCchhhhcCCCCCCHHHHHHHHHHHHHHhCCCCCC--CchHHHHHHHHHHHHHHHhcC
Q 034568           32 KPKDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQK--DRDCATSRFQEINEAYQGKRS   89 (91)
Q Consensus        32 ~~~~~y~iLgl~~~a~~~~Ikkayr~l~~~~HPDk~~--~~~~a~~~f~~i~~Ay~~L~~   89 (91)
                      ...++|+||||..+|+..+||+||+++++.+|||+++  ...++.++|+.|+.||.+|+|
T Consensus        12 ~~~d~YevLGVer~a~~~eIrkAY~klal~~HPDk~~eed~~ea~~kFq~l~k~y~iLsD   71 (264)
T KOG0719|consen   12 NKKDLYEVLGVERDATDKEIRKAYHKLALRLHPDKNHEEDKVEATEKFQQLQKAYQILSD   71 (264)
T ss_pred             cccCHHHHhhhcccCCHHHHHHHHHHHHHHhCCCcchhhhHHHHHHHHHHHHHHHHHhhH
Confidence            3559999999999999999999999999999999994  445699999999999999986

>PRK09430 djlA Dna-J like membrane chaperone protein; Provisional

Probab=99.63  E-value=4.8e-16  Score=109.91  Aligned_cols=59  Identities=32%  Similarity=0.473  Sum_probs=52.4

Q ss_pred             CCCCchhhhcCCCCCCHHHHHHHHHHHHHHhCCCCCCC---c----hHHHHHHHHHHHHHHHhcCC
Q 034568           32 KPKDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKD---R----DCATSRFQEINEAYQGKRSL   90 (91)
Q Consensus        32 ~~~~~y~iLgl~~~a~~~~Ikkayr~l~~~~HPDk~~~---~----~~a~~~f~~i~~Ay~~L~~~   90 (91)
                      ...++|+||||++++|.++||++||++++++|||+..+   +    +.++++|++|++||++|++.
T Consensus       198 ~~~~ay~vLgv~~~as~~eIk~aYr~L~~~~HPDk~~~~g~~~~~~~~a~ek~~~I~~AYe~L~~~  263 (267)
T PRK09430        198 TLEDAYKVLGVSESDDDQEIKRAYRKLMSEHHPDKLVAKGLPPEMMEMAKEKAQEIQAAYELIKKQ  263 (267)
T ss_pred             cHHhHHHHcCCCCCCCHHHHHHHHHHHHHHhCcCCCCCCCCChhhHHHHHHHHHHHHHHHHHHHHh
Confidence            44799999999999999999999999999999999643   2    34889999999999999863

>PRK05014 hscB co-chaperone HscB; Provisional

Probab=99.59  E-value=3.5e-15  Score=99.59  Aligned_cols=57  Identities=26%  Similarity=0.443  Sum_probs=49.7

Q ss_pred             CCchhhhcCCCC--CCHHHHHHHHHHHHHHhCCCCCCCch-----HHHHHHHHHHHHHHHhcCC
Q 034568           34 KDYYKILEVDYD--ATEEEIRSNYIRLALKWHPDKQKDRD-----CATSRFQEINEAYQGKRSL   90 (91)
Q Consensus        34 ~~~y~iLgl~~~--a~~~~Ikkayr~l~~~~HPDk~~~~~-----~a~~~f~~i~~Ay~~L~~~   90 (91)
                      .|||++|||++.  ++..+|+++||++++++|||+..+..     .+.+.|..||+||++|++-
T Consensus         1 ~~yf~llgl~~~~~~d~~~L~~~yr~l~~~~HPDk~~~~~~~~~~~a~~~s~~iN~AY~~L~dp   64 (171)
T PRK05014          1 MDYFTLFGLPARYDIDTQLLASRYQELQRQFHPDKFANASERERLLAVQQAATINDAYQTLKHP   64 (171)
T ss_pred             CCHHHHCCCCCCCCCCHHHHHHHHHHHHHHhCcCCCCCCcHHHHHHHHHHHHHHHHHHHHHCCh
Confidence            389999999996  78899999999999999999976542     2577899999999999973

>TIGR03835 termin_org_DnaJ terminal organelle assembly protein TopJ

Probab=99.57  E-value=5e-15  Score=115.71  Aligned_cols=55  Identities=45%  Similarity=0.718  Sum_probs=51.8

Q ss_pred             CCchhhhcCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHhcC
Q 034568           34 KDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAYQGKRS   89 (91)
Q Consensus        34 ~~~y~iLgl~~~a~~~~Ikkayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~~L~~   89 (91)
                      .|||+||||+++|+..+||++||+|++++|||++++ ..+.++|+.|++||++|++
T Consensus         2 ~DYYeVLGVs~dAS~eEIKKAYRKLAKKyHPDKn~~-~eAeekFqeINEAYEVLSD   56 (871)
T TIGR03835         2 RDYYEVLGIDRDADEQEIKKAFRKLAKKYHPDRNKA-PDAASIFAEINEANDVLSN   56 (871)
T ss_pred             CChhHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCC-hhHHHHHHHHHHHHHHhCC
Confidence            589999999999999999999999999999999887 4478899999999999987

This model describes TopJ (MG_200, CbpA), a DnaJ homolog and probable assembly protein of the Mycoplasma terminal organelle. The terminal organelle is involved in both cytadherence and gliding motility.

>PRK01356 hscB co-chaperone HscB; Provisional

Probab=99.57  E-value=8.8e-15  Score=97.29  Aligned_cols=56  Identities=23%  Similarity=0.474  Sum_probs=48.7

Q ss_pred             CCchhhhcCCCC--CCHHHHHHHHHHHHHHhCCCCCCCch---HHHHHHHHHHHHHHHhcC
Q 034568           34 KDYYKILEVDYD--ATEEEIRSNYIRLALKWHPDKQKDRD---CATSRFQEINEAYQGKRS   89 (91)
Q Consensus        34 ~~~y~iLgl~~~--a~~~~Ikkayr~l~~~~HPDk~~~~~---~a~~~f~~i~~Ay~~L~~   89 (91)
                      .|||++|||++.  ++..+|+++||++++++|||++.+..   .+.+.+..||+||++|++
T Consensus         2 ~~yf~llgl~~~f~id~~~L~~aYr~lq~~~HPDk~~~~~~k~~~~~~s~~in~AY~~L~d   62 (166)
T PRK01356          2 QNYFQLLGLPQEYNIDLKILEKQYFAMQVKYHPDKAKTLQEKEQNLIIASELNNAYSTLKD   62 (166)
T ss_pred             CCHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCHHHHHHHHHHHHHHHHHHHHhCC
Confidence            489999999997  78999999999999999999987642   244568899999999986

>PRK03578 hscB co-chaperone HscB; Provisional

Probab=99.56  E-value=1.4e-14  Score=97.18  Aligned_cols=58  Identities=22%  Similarity=0.302  Sum_probs=49.6

Q ss_pred             CCCCchhhhcCCCC--CCHHHHHHHHHHHHHHhCCCCCCCchH-----HHHHHHHHHHHHHHhcC
Q 034568           32 KPKDYYKILEVDYD--ATEEEIRSNYIRLALKWHPDKQKDRDC-----ATSRFQEINEAYQGKRS   89 (91)
Q Consensus        32 ~~~~~y~iLgl~~~--a~~~~Ikkayr~l~~~~HPDk~~~~~~-----a~~~f~~i~~Ay~~L~~   89 (91)
                      ...|||++||||+.  ++..+|+++||++++++|||++.+...     +.+.+..||+||++|++
T Consensus         4 ~~~dyf~llglp~~f~~d~~~L~~~yr~lq~~~HPD~~~~~~~~e~~~a~~~s~~iN~AY~tL~~   68 (176)
T PRK03578          4 LKDDHFSLFGLPARFALDEAALDAAYRTVQAQVHPDRFAAAGDAEKRVAMQWATRANEAYQTLRD   68 (176)
T ss_pred             CCCCHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCCHHHHHHHHHHHHHHHHHHHHhCC
Confidence            34799999999996  689999999999999999999875432     44557899999999987

>PRK00294 hscB co-chaperone HscB; Provisional

Probab=99.56  E-value=1.5e-14  Score=96.81  Aligned_cols=58  Identities=26%  Similarity=0.382  Sum_probs=51.2

Q ss_pred             CCCCchhhhcCCCC--CCHHHHHHHHHHHHHHhCCCCCCCch-----HHHHHHHHHHHHHHHhcC
Q 034568           32 KPKDYYKILEVDYD--ATEEEIRSNYIRLALKWHPDKQKDRD-----CATSRFQEINEAYQGKRS   89 (91)
Q Consensus        32 ~~~~~y~iLgl~~~--a~~~~Ikkayr~l~~~~HPDk~~~~~-----~a~~~f~~i~~Ay~~L~~   89 (91)
                      ...|||++|||++.  ++..+|+++||++++++|||+..+..     .+.+.|..||+||++|++
T Consensus         2 ~~~~~F~l~~l~~~f~id~~~L~~~Yr~Lq~~~HPDk~~~~~~~e~~~a~~~s~~IN~AY~~L~~   66 (173)
T PRK00294          2 GTPCHFALFDLQPSFRLDLDQLATRYRELAREVHPDRFADAPEREQRLALERSASLNEAYQTLKS   66 (173)
T ss_pred             CCCChhhhcCcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCcHHHHHHHHHHHHHHHHHHHHhCC
Confidence            46799999999997  67999999999999999999986642     267789999999999987

>KOG0722 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.52  E-value=6.7e-15  Score=103.32  Aligned_cols=61  Identities=30%  Similarity=0.520  Sum_probs=56.3

Q ss_pred             hhcCCCCchhhhcCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHhcCC
Q 034568           29 LLAKPKDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAYQGKRSL   90 (91)
Q Consensus        29 ~~~~~~~~y~iLgl~~~a~~~~Ikkayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~~L~~~   90 (91)
                      ..+...|.|+||||++.++..+|.+|||+|++++|||++.+++ +.+.|..|..||++|+|.
T Consensus        28 LYCG~enCYdVLgV~Rea~KseIakAYRqLARrhHPDr~r~~e-~k~~F~~iAtayeilkd~   88 (329)
T KOG0722|consen   28 LYCGAENCYDVLGVAREANKSEIAKAYRQLARRHHPDRNRDPE-SKKLFVKIATAYEILKDN   88 (329)
T ss_pred             hcccchhHHHHhhhhhhccHHHHHHHHHHHHHHhCCcccCCch-hhhhhhhhhcccccccch
Confidence            3467789999999999999999999999999999999999976 679999999999999875

>KOG0720 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.52  E-value=1.7e-14  Score=107.32  Aligned_cols=66  Identities=26%  Similarity=0.320  Sum_probs=58.2

Q ss_pred             hhhhhhcCCCCchhhhcCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHhcCCC
Q 034568           25 DFLSLLAKPKDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAYQGKRSLD   91 (91)
Q Consensus        25 ~~~~~~~~~~~~y~iLgl~~~a~~~~Ikkayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~~L~~~~   91 (91)
                      +.........|+|.+|||+.+++.++|||.||++|...||||+..+ .|.|.|+.++.||++|.+.+
T Consensus       226 drl~re~~~~daYsvlGl~~d~sd~~lKk~Yrk~A~LVhPDKn~~~-~A~Eafk~Lq~Afevig~~~  291 (490)
T KOG0720|consen  226 DRLSRELNILDAYSALGLPSDCSDADLKKNYRKKAMLVHPDKNMIP-RAEEAFKKLQVAFEVIGDSV  291 (490)
T ss_pred             HhhhhhhcCCCchhhcCCCCCCCHHHHHHHHHhhceEeCCCccCCh-hHHHHHHHHHHHHHHhcchh
Confidence            3344445578999999999999999999999999999999999964 59999999999999998753

>PHA02624 large T antigen; Provisional

Probab=99.46  E-value=9e-14  Score=107.10  Aligned_cols=54  Identities=24%  Similarity=0.453  Sum_probs=49.5

Q ss_pred             CCCchhhhcCCCCC--CHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHhcCC
Q 034568           33 PKDYYKILEVDYDA--TEEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAYQGKRSL   90 (91)
Q Consensus        33 ~~~~y~iLgl~~~a--~~~~Ikkayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~~L~~~   90 (91)
                      ..++|++|||++++  +.++||+|||++++++|||++++    .++|++|++||++|++.
T Consensus        10 ~~elyelLGL~~~A~gs~~eIKkAYRkLAkkyHPDKgGd----eekfk~Ln~AYevL~d~   65 (647)
T PHA02624         10 SKELMDLLGLPMAAWGNLPLMRKAYLRKCKEYHPDKGGD----EEKMKRLNSLYKKLQEG   65 (647)
T ss_pred             HHHHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCc----HHHHHHHHHHHHHHhcH
Confidence            45799999999999  99999999999999999999754    58999999999999873

>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]

Probab=99.34  E-value=1.9e-12  Score=94.87  Aligned_cols=61  Identities=38%  Similarity=0.625  Sum_probs=56.1

Q ss_pred             hhcCCCCchhhhcCCCCCCHHHHHHHHHHHHHHhCCCCCCCch---HHHHHHHHHHHHHHHhcC
Q 034568           29 LLAKPKDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRD---CATSRFQEINEAYQGKRS   89 (91)
Q Consensus        29 ~~~~~~~~y~iLgl~~~a~~~~Ikkayr~l~~~~HPDk~~~~~---~a~~~f~~i~~Ay~~L~~   89 (91)
                      .....+|||.||||.++|+..||.||||+++.++|||-..+.+   .|+++|.-|-.|-++|+|
T Consensus       389 kqs~kRDYYKILGVkRnAsKqEI~KAYRKlAqkWHPDNFqdEeEKKkAEKKFIDIAAAKEVLsd  452 (504)
T KOG0624|consen  389 KQSGKRDYYKILGVKRNASKQEITKAYRKLAQKWHPDNFQDEEEKKKAEKKFIDIAAAKEVLSD  452 (504)
T ss_pred             HHhccchHHHHhhhcccccHHHHHHHHHHHHHhcCCccccCHHHHHHHHHhhhhHHHHHHhhcC
Confidence            4467899999999999999999999999999999999988853   489999999999999987

>PRK01773 hscB co-chaperone HscB; Provisional

Probab=99.33  E-value=5.2e-12  Score=84.53  Aligned_cols=56  Identities=20%  Similarity=0.368  Sum_probs=49.6

Q ss_pred             CCchhhhcCCCC--CCHHHHHHHHHHHHHHhCCCCCCCch-----HHHHHHHHHHHHHHHhcC
Q 034568           34 KDYYKILEVDYD--ATEEEIRSNYIRLALKWHPDKQKDRD-----CATSRFQEINEAYQGKRS   89 (91)
Q Consensus        34 ~~~y~iLgl~~~--a~~~~Ikkayr~l~~~~HPDk~~~~~-----~a~~~f~~i~~Ay~~L~~   89 (91)
                      .|||++||||+.  .+...++++||++.+.+|||+..+..     .+.+....||+||.+|++
T Consensus         2 ~nyF~lf~lp~~F~iD~~~L~~~y~~Lq~~~HPD~f~~~~~~eq~~a~~~ss~iN~AY~tLkd   64 (173)
T PRK01773          2 NNPFALFDLPVDFQLDNALLSERYLALQKSLHPDNFANSSAQEQRLAMQKSAEVNDALQILKD   64 (173)
T ss_pred             CChHHhcCCCCCCCCCHHHHHHHHHHHHHHhCcCcccCCCHHHHHHHHHHHHHHHHHHHHHCC
Confidence            489999999997  89999999999999999999976642     356678899999999987

>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.32  E-value=1.7e-12  Score=96.28  Aligned_cols=62  Identities=39%  Similarity=0.618  Sum_probs=57.2

Q ss_pred             hhcCCCCchhhhcCCCCCCHHHHHHHHHHHHHHhCCCCCCCc-hHHHHHHHHHHHHHHHhcCC
Q 034568           29 LLAKPKDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDR-DCATSRFQEINEAYQGKRSL   90 (91)
Q Consensus        29 ~~~~~~~~y~iLgl~~~a~~~~Ikkayr~l~~~~HPDk~~~~-~~a~~~f~~i~~Ay~~L~~~   90 (91)
                      ..+.+.++|.|||+...++..+|+++||++++.+|||++.+. .+++.+|+++-+||.+|+|.
T Consensus       368 kkSkRkd~ykilGi~~~as~~eikkayrk~AL~~Hpd~~agsq~eaE~kFkevgeAy~il~d~  430 (486)
T KOG0550|consen  368 KKSKRKDWYKILGISRNASDDEIKKAYRKLALVHHPDKNAGSQKEAEAKFKEVGEAYTILSDP  430 (486)
T ss_pred             HHhhhhhHHHHhhhhhhcccchhhhHHHHHHHHhCCCcCcchhHHHHHHHHHHHHHHHHhcCH
Confidence            446788999999999999999999999999999999998886 66899999999999999974

>KOG1150 consensus Predicted molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.31  E-value=4.1e-12  Score=86.68  Aligned_cols=58  Identities=28%  Similarity=0.521  Sum_probs=54.0

Q ss_pred             CCCCchhhhcCCCCCCHHHHHHHHHHHHHHhCCCCCCCc-hHHHHHHHHHHHHHHHhcC
Q 034568           32 KPKDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDR-DCATSRFQEINEAYQGKRS   89 (91)
Q Consensus        32 ~~~~~y~iLgl~~~a~~~~Ikkayr~l~~~~HPDk~~~~-~~a~~~f~~i~~Ay~~L~~   89 (91)
                      -+.|+|+||.|.+..+.++||+.||+|++..|||+|++. +.|..+|..|..||..|-+
T Consensus        51 fnLNpfeVLqIdpev~~edikkryRklSilVHPDKN~Dd~~rAqkAFdivkKA~k~l~n  109 (250)
T KOG1150|consen   51 FNLNPFEVLQIDPEVTDEDIKKRYRKLSILVHPDKNPDDAERAQKAFDIVKKAYKLLEN  109 (250)
T ss_pred             cccChHHHHhcCCCCCHHHHHHHHHhhheeecCCCCcccHHHHHHHHHHHHHHHHHHhC
Confidence            357999999999999999999999999999999999997 5699999999999999865

>KOG0714 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.25  E-value=7.6e-12  Score=86.69  Aligned_cols=58  Identities=47%  Similarity=0.769  Sum_probs=51.0

Q ss_pred             CCCchhhhcCCCCCCHHHHHHHHHHHHHHhCCCCCCCc-hHHHHHHHHHHHHHHHhcCC
Q 034568           33 PKDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDR-DCATSRFQEINEAYQGKRSL   90 (91)
Q Consensus        33 ~~~~y~iLgl~~~a~~~~Ikkayr~l~~~~HPDk~~~~-~~a~~~f~~i~~Ay~~L~~~   90 (91)
                      ..++|.||||.+.++..+|++|||++++++|||+++.. ..+..+|.+|.+||++|++.
T Consensus         2 ~~d~~~~l~i~~~as~~~i~ka~~~~a~~~hpdk~~~~~~~~~~~~~~~~ea~~~ls~~   60 (306)
T KOG0714|consen    2 GKDYYKILGIARSASEEDIKKAYRKLALKYHPDKNPSPKEVAEAKFKEIAEAYEVLSDP   60 (306)
T ss_pred             cccHHHHhCccccccHHHHHHHHHHHHHhhCCCCCCCchhhHHHHHhhhhccccccCCH
Confidence            46899999999999999999999999999999997776 23556899999999999863

>COG5407 SEC63 Preprotein translocase subunit Sec63 [Intracellular trafficking and secretion]

Probab=99.25  E-value=7.3e-12  Score=93.75  Aligned_cols=58  Identities=33%  Similarity=0.568  Sum_probs=53.0

Q ss_pred             CCCCchhhhcCCCCCCHHHHHHHHHHHHHHhCCCCCCC-----chHHHHHHHHHHHHHHHhcC
Q 034568           32 KPKDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKD-----RDCATSRFQEINEAYQGKRS   89 (91)
Q Consensus        32 ~~~~~y~iLgl~~~a~~~~Ikkayr~l~~~~HPDk~~~-----~~~a~~~f~~i~~Ay~~L~~   89 (91)
                      .--|||+||||..+++..+||++||+|+.++||||.+.     ..+.++.+..|++||..|.|
T Consensus        96 ~~fDPyEILGI~~~ts~rdik~~yr~Ls~KfhpdK~~~mvn~~rse~Ee~y~~ItkAY~~lTd  158 (610)
T COG5407          96 RGFDPYEILGIDQDTSERDIKKRYRMLSMKFHPDKAPPMVNELRSEYEEKYKTITKAYGLLTD  158 (610)
T ss_pred             cCCChHHhhcccCCCcHHHHHHHHHhheeecChhhcCCCChhHHHHHHHHHHHHHHHHHhhhh
Confidence            45699999999999999999999999999999999776     24578999999999999986

>TIGR00714 hscB Fe-S protein assembly co-chaperone HscB

Probab=99.06  E-value=4.8e-10  Score=73.96  Aligned_cols=45  Identities=24%  Similarity=0.385  Sum_probs=38.6

Q ss_pred             CCCHHHHHHHHHHHHHHhCCCCCCCc-----hHHHHHHHHHHHHHHHhcC
Q 034568           45 DATEEEIRSNYIRLALKWHPDKQKDR-----DCATSRFQEINEAYQGKRS   89 (91)
Q Consensus        45 ~a~~~~Ikkayr~l~~~~HPDk~~~~-----~~a~~~f~~i~~Ay~~L~~   89 (91)
                      ..+..+|+++||++++++|||+..+.     ..+.+.|..||+||++|++
T Consensus         2 ~iD~~~L~~~yr~lq~~~HPD~~~~~~~~~~~~a~~~s~~iN~AY~~L~~   51 (157)
T TIGR00714         2 QLDTQALSLRYQDLQRQYHPDKFASGSAQEQLAAVQQSTTLNQAYQTLKD   51 (157)
T ss_pred             CCCHHHHHHHHHHHHHHHCcCCCCCCChhhhHHHHHHHHHHHHHHHHhCC
Confidence            35789999999999999999996553     2367899999999999987

This model describes the small subunit, Hsc20 (20K heat shock cognate protein) of a pair of proteins Hsc66-Hsc20, related to the DnaK-DnaJ heat shock proteins, which also serve as molecular chaperones. Hsc20, unlike DnaJ, appears not to have chaperone activity on its own, but to act solely as a regulatory subunit for Hsc66 (i.e., to be a co-chaperone). The gene for Hsc20 in E. coli, hscB, is not induced by heat shock.

>KOG0723 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=98.98  E-value=9.9e-10  Score=68.01  Aligned_cols=60  Identities=23%  Similarity=0.207  Sum_probs=51.4

Q ss_pred             hhhhhcCCCCchhhhcCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHhcC
Q 034568           26 FLSLLAKPKDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAYQGKRS   89 (91)
Q Consensus        26 ~~~~~~~~~~~y~iLgl~~~a~~~~Ikkayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~~L~~   89 (91)
                      .++....++..-.||||+++++.+.||.++|+++...|||+.++|-.|.    +||||+++|..
T Consensus        48 GF~~kMsr~EA~lIL~v~~s~~k~KikeaHrriM~~NHPD~GGSPYlAs----KINEAKdlLe~  107 (112)
T KOG0723|consen   48 GFEPKMSRREAALILGVTPSLDKDKIKEAHRRIMLANHPDRGGSPYLAS----KINEAKDLLEG  107 (112)
T ss_pred             ccccccchHHHHHHhCCCccccHHHHHHHHHHHHHcCCCcCCCCHHHHH----HHHHHHHHHhc
Confidence            4445556777888999999999999999999999999999999985444    49999999875

>KOG0568 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=98.89  E-value=3.7e-09  Score=74.00  Aligned_cols=55  Identities=29%  Similarity=0.528  Sum_probs=49.0

Q ss_pred             CCCchhhhcCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHH-Hhc
Q 034568           33 PKDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAYQ-GKR   88 (91)
Q Consensus        33 ~~~~y~iLgl~~~a~~~~Ikkayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~-~L~   88 (91)
                      -..+|.+|||..+++.+++|.+|..|++++|||.+.... ..+.|.+|.+||. +|+
T Consensus        46 ~~e~fril~v~e~~~adevr~af~~lakq~hpdsgs~~a-daa~f~qideafrkvlq  101 (342)
T KOG0568|consen   46 IMECFRILGVEEGADADEVREAFHDLAKQVHPDSGSEEA-DAARFIQIDEAFRKVLQ  101 (342)
T ss_pred             HHHHHHHhcccccCchhHHHHHHHHHHHHcCCCCCCccc-cHHHHHHHHHHHHHHHH
Confidence            457999999999999999999999999999999887743 6789999999998 554

>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]

Probab=98.87  E-value=3.7e-09  Score=85.92  Aligned_cols=54  Identities=33%  Similarity=0.530  Sum_probs=47.1

Q ss_pred             CCCCchhhhcCCCC----CCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHhc
Q 034568           32 KPKDYYKILEVDYD----ATEEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAYQGKR   88 (91)
Q Consensus        32 ~~~~~y~iLgl~~~----a~~~~Ikkayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~~L~   88 (91)
                      ...+.|+||.|+.+    -++++||++|++|+.+||||||+.   ..+.|..+|+||+.|.
T Consensus      1279 S~d~A~eiL~i~l~n~~hD~~~KirrqY~kLA~kYHPDKNPE---GRemFe~VnKAYE~L~ 1336 (2235)
T KOG1789|consen 1279 SVDLAREILSVDLTNEEHDKPAKIRRQYYKLAAKYHPDKNPE---GREMFERVNKAYELLS 1336 (2235)
T ss_pred             chHHHHHHhccccCCCCcccHHHHHHHHHHHHHHhCCCCCch---HHHHHHHHHHHHHHHH
Confidence            34578999999864    356899999999999999999986   5799999999999997

>COG5269 ZUO1 Ribosome-associated chaperone zuotin [Translation, ribosomal structure and biogenesis / Posttranslational modification, protein turnover, chaperones]

Probab=98.66  E-value=2.9e-08  Score=70.85  Aligned_cols=60  Identities=23%  Similarity=0.260  Sum_probs=50.7

Q ss_pred             cCCCCchhhhcCCC---CCCHHHHHHHHHHHHHHhCCCCC--CCchHHHHHHHHHHHHHHHhcCC
Q 034568           31 AKPKDYYKILEVDY---DATEEEIRSNYIRLALKWHPDKQ--KDRDCATSRFQEINEAYQGKRSL   90 (91)
Q Consensus        31 ~~~~~~y~iLgl~~---~a~~~~Ikkayr~l~~~~HPDk~--~~~~~a~~~f~~i~~Ay~~L~~~   90 (91)
                      +...|+|.+|||+.   .+++.+|.++.++.+.+||||+.  ++.-+..+.|..|+.||++|.|.
T Consensus        40 Wk~~DlYa~lgLskyR~ka~~~qi~kah~kkv~kyHPDk~aa~g~~~~d~fFk~iqkA~evL~D~  104 (379)
T COG5269          40 WKKVDLYALLGLSKYRTKAIPPQILKAHKKKVYKYHPDKTAAGGNKGCDEFFKLIQKAREVLGDR  104 (379)
T ss_pred             hhhhhHHHHhchHhhhcCCCcHHHHHHHHHHHHHhCccchhccCCCCcHHHHHHHHHHHHHhccH
Confidence            45679999999997   58999999999999999999995  22223678999999999999873

>KOG0431 consensus Auxilin-like protein and related proteins containing DnaJ domain [General function prediction only]

Probab=98.12  E-value=5.8e-06  Score=62.58  Aligned_cols=55  Identities=20%  Similarity=0.337  Sum_probs=42.5

Q ss_pred             CCchhhhcCCCCCCHHHHHHHHHHHHHHhCCCCCCCch-------HHHHHHHHHHHHHHHhc
Q 034568           34 KDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRD-------CATSRFQEINEAYQGKR   88 (91)
Q Consensus        34 ~~~y~iLgl~~~a~~~~Ikkayr~l~~~~HPDk~~~~~-------~a~~~f~~i~~Ay~~L~   88 (91)
                      ..=|+-.+|..-+++.+|||+||+.++.+||||.+..+       .+++.|-.+++|++...
T Consensus       388 es~WqpVsltDLVtp~~VKKaYrKA~L~VHPDKlqq~gas~~qK~Iaekvfd~l~eawn~f~  449 (453)
T KOG0431|consen  388 ESGWQPVSLTDLVTPAQVKKAYRKAVLCVHPDKLQQKGASLEQKYIAEKVFDALSEAWNKFN  449 (453)
T ss_pred             ccCcccCchhhccCHHHHHHHHHhhhheeCcccccCCcccHHHHHHHHHHHHHHHHHHHhhh
Confidence            34455556666789999999999999999999977752       36777777888877643

>COG1076 DjlA DnaJ-domain-containing proteins 1 [Posttranslational modification, protein turnover, chaperones]

Probab=98.00  E-value=5e-06  Score=55.53  Aligned_cols=55  Identities=33%  Similarity=0.548  Sum_probs=48.2

Q ss_pred             CCCchhhhcCCCCCCHHHHHHHHHHHHHHhCCCCCCCc-------hHHHHHHHHHHHHHHHh
Q 034568           33 PKDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDR-------DCATSRFQEINEAYQGK   87 (91)
Q Consensus        33 ~~~~y~iLgl~~~a~~~~Ikkayr~l~~~~HPDk~~~~-------~~a~~~f~~i~~Ay~~L   87 (91)
                      ..+.|.+||+....+..+|+++||++....|||+..+.       ..+.+++++|++||+.+
T Consensus       112 ~~~~l~~l~~~~~~~~~~i~~~~r~l~~e~~~d~a~~~~~~~e~~~~~~~~~~~i~~a~~~~  173 (174)
T COG1076         112 REDALKVLGVEIKADQDAIKKAYRKLLSEQHPDKAAAKGLKLEFIEKLKEKLQEIQEAYEDI  173 (174)
T ss_pred             chhHHHHhcCchhhhHHHHHHHHHHHHHhcCHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhc
Confidence            36899999999999999999999999999999995442       35788999999999864

>KOG3192 consensus Mitochondrial J-type chaperone [Posttranslational modification, protein turnover, chaperones]

Probab=97.97  E-value=1.1e-05  Score=53.22  Aligned_cols=60  Identities=22%  Similarity=0.527  Sum_probs=49.4

Q ss_pred             hcCCCCchhhhcCCC--CCCHHHHHHHHHHHHHHhCCCCCCCc-----hHHHHHHHHHHHHHHHhcC
Q 034568           30 LAKPKDYYKILEVDY--DATEEEIRSNYIRLALKWHPDKQKDR-----DCATSRFQEINEAYQGKRS   89 (91)
Q Consensus        30 ~~~~~~~y~iLgl~~--~a~~~~Ikkayr~l~~~~HPDk~~~~-----~~a~~~f~~i~~Ay~~L~~   89 (91)
                      +....+||.+||...  ..+++.++.-|....+++|||+.+.+     ..|.+....+++||++|++
T Consensus         4 ~~~~~~ff~~Fg~e~~~~~~p~~l~~~~~~~skkL~~d~~~~~~~~~~d~a~eqSa~lnkAY~TLk~   70 (168)
T KOG3192|consen    4 MGSPSRFFDIFGMELSFKIDPDKLKEKYTDISKKLHPDRPGLSFAGDTDQASEQSAELNKAYDTLKD   70 (168)
T ss_pred             cchHHHHHHHhccccCCCCCcchhhHHHHHHHHhhCcccccccccccchhHHHHHHHHHHHHHHHHh
Confidence            455678999998665  46888888899999999999995553     3478889999999999975

>PF03656 Pam16: Pam16; InterPro: IPR005341 The Pam16 protein is the fifth essential subunit of the pre-sequence translocase-associated protein import motor (PAM) []

Probab=97.05  E-value=0.0024  Score=40.96  Aligned_cols=51  Identities=22%  Similarity=0.178  Sum_probs=34.6

Q ss_pred             CCCchhhhcCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHh
Q 034568           33 PKDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAYQGK   87 (91)
Q Consensus        33 ~~~~y~iLgl~~~a~~~~Ikkayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~~L   87 (91)
                      .....+||||++..+.++|.+.|.+|-...+|+++++.-    .=.+|..|.+.|
T Consensus        57 l~EA~~ILnv~~~~~~eeI~k~y~~Lf~~Nd~~kGGSfY----LQSKV~rAKErl  107 (127)
T PF03656_consen   57 LDEARQILNVKEELSREEIQKRYKHLFKANDPSKGGSFY----LQSKVFRAKERL  107 (127)
T ss_dssp             HHHHHHHHT--G--SHHHHHHHHHHHHHHT-CCCTS-HH----HHHHHHHHHHHH
T ss_pred             HHHHHHHcCCCCccCHHHHHHHHHHHHhccCCCcCCCHH----HHHHHHHHHHHH
Confidence            346789999999999999999999999999999988742    223455555554

In Saccharomyces cerevisiae (Baker's yeast), Pam16 is required for preprotein translocation into the matrix, but not for protein insertion into the inner membrane [].; PDB: 2GUZ_J.

>COG1076 DjlA DnaJ-domain-containing proteins 1 [Posttranslational modification, protein turnover, chaperones]

Probab=96.83  E-value=0.00088  Score=44.69  Aligned_cols=55  Identities=22%  Similarity=0.359  Sum_probs=43.8

Q ss_pred             CchhhhcCCCC--CCHHHHHHHHHHHHHHhCCCCCCCch-----HHHHHHHHHHHHHHHhcC
Q 034568           35 DYYKILEVDYD--ATEEEIRSNYIRLALKWHPDKQKDRD-----CATSRFQEINEAYQGKRS   89 (91)
Q Consensus        35 ~~y~iLgl~~~--a~~~~Ikkayr~l~~~~HPDk~~~~~-----~a~~~f~~i~~Ay~~L~~   89 (91)
                      +++..+|+++.  .+.+.++..|+.+.+.+|||+.....     .+.+.+..++.||.+|++
T Consensus         2 ~~~~~~~~~~~f~~~~~~l~~~~~~~~~~~~~dr~~~~~~~~~~~~l~~~~~~~~a~~tLk~   63 (174)
T COG1076           2 DGFVLFGLPRAFQIDLDALKLQYRELQRAYHPDRFGKASEAEQRKALQQSAEVNPAYQTLKD   63 (174)
T ss_pred             CcccccccHHHHHHHHhHhhhhHHHHHHhhCcccccccchHHHHHHHHHHHHhcchHHHHHH
Confidence            45666777775  46777999999999999999987753     245688899999999875

>PF13446 RPT: A repeated domain in UCH-protein

Probab=94.23  E-value=0.16  Score=28.10  Aligned_cols=27  Identities=26%  Similarity=0.388  Sum_probs=24.7

Q ss_pred             CCchhhhcCCCCCCHHHHHHHHHHHHH
Q 034568           34 KDYYKILEVDYDATEEEIRSNYIRLAL   60 (91)
Q Consensus        34 ~~~y~iLgl~~~a~~~~Ikkayr~l~~   60 (91)
                      .+.|++|||+++.+.+.|-.+|.....
T Consensus         5 ~~Ay~~Lgi~~~~~Dd~Ii~~f~~~~~   31 (62)
T PF13446_consen    5 EEAYEILGIDEDTDDDFIISAFQSKVN   31 (62)
T ss_pred             HHHHHHhCcCCCCCHHHHHHHHHHHHH
Confidence            467999999999999999999999887

>PF14687 DUF4460: Domain of unknown function (DUF4460)

Probab=93.31  E-value=0.34  Score=30.34  Aligned_cols=45  Identities=13%  Similarity=0.224  Sum_probs=32.7

Q ss_pred             CCCHHHHHHHHHHHHHHhCCCCCCCch----HHHHHHHHHHHHHHHhcC
Q 034568           45 DATEEEIRSNYIRLALKWHPDKQKDRD----CATSRFQEINEAYQGKRS   89 (91)
Q Consensus        45 ~a~~~~Ikkayr~l~~~~HPDk~~~~~----~a~~~f~~i~~Ay~~L~~   89 (91)
                      ..+..+++.+.|.+-++.|||..+..+    ..++-++.++.--+.|+.
T Consensus         5 ~~~~~~l~~aLr~Fy~~VHPDlF~~~P~~k~~Ne~SLk~Ln~~Ld~l~~   53 (112)
T PF14687_consen    5 NLSSPDLRSALRPFYFAVHPDLFGQHPEEKQVNEESLKLLNSYLDSLKK   53 (112)
T ss_pred             hhhhHHHHHHHHHHHHHhCCcccccChHHHHhhHHHHHHHHHHHHHHhc
Confidence            456788999999999999999877653    235556666665555543

>PF11833 DUF3353: Protein of unknown function (DUF3353); InterPro: IPR021788 This family of proteins are functionally uncharacterised

Probab=92.28  E-value=0.55  Score=32.07  Aligned_cols=37  Identities=30%  Similarity=0.346  Sum_probs=29.3

Q ss_pred             CCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHh
Q 034568           43 DYDATEEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAYQGK   87 (91)
Q Consensus        43 ~~~a~~~~Ikkayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~~L   87 (91)
                      +++|+.+||.+|+.++..+|--|        .+.-..|..|||.+
T Consensus         1 S~~ASfeEIq~Arn~ll~~y~gd--------~~~~~~IEaAYD~I   37 (194)
T PF11833_consen    1 SEDASFEEIQAARNRLLAQYAGD--------EKSREAIEAAYDAI   37 (194)
T ss_pred             CCCCCHHHHHHHHHHHHHHhcCC--------HHHHHHHHHHHHHH
Confidence            47899999999999999998222        35556788899875

This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 205 to 258 amino acids in length.

>KOG0724 consensus Zuotin and related molecular chaperones (DnaJ superfamily), contains DNA-binding domains [Posttranslational modification, protein turnover, chaperones]

Probab=87.63  E-value=0.89  Score=32.92  Aligned_cols=44  Identities=32%  Similarity=0.440  Sum_probs=35.9

Q ss_pred             CCHHHHHHHHHHHHHHhCCCCCCC----chHHHHHHHHHHHHHHHhcC
Q 034568           46 ATEEEIRSNYIRLALKWHPDKQKD----RDCATSRFQEINEAYQGKRS   89 (91)
Q Consensus        46 a~~~~Ikkayr~l~~~~HPDk~~~----~~~a~~~f~~i~~Ay~~L~~   89 (91)
                      ++..+|+.+|+..++..||++...    .....+.|++|.+||++|.+
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~i~ka~~i~~~   51 (335)
T KOG0724|consen    4 ASEDELRLAYREMALKSHPEKKSFYEKLSLWTEEEFKKIEKALAILDD   51 (335)
T ss_pred             ccHHHHHHHHHHHhhhcCcHHHHHHHHhhhhHHHHHHHHHHHHHHHhc
Confidence            567889999999999999998752    11256789999999999986

>PF07709 SRR: Seven Residue Repeat; InterPro: IPR011714 This repeat is found in some Plasmodium and Theileria proteins

Probab=81.00  E-value=1  Score=17.83  Aligned_cols=13  Identities=23%  Similarity=0.667  Sum_probs=9.9

Q ss_pred             HHHHHHHHHHHhc
Q 034568           76 RFQEINEAYQGKR   88 (91)
Q Consensus        76 ~f~~i~~Ay~~L~   88 (91)
                      .|..+..||+.|+
T Consensus         2 ~~~~V~~aY~~l~   14 (14)
T PF07709_consen    2 KFEKVKNAYEQLS   14 (14)
T ss_pred             cHHHHHHHHHhcC
Confidence            5777888888774

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	91
1xbl_A	107	Nmr Structure Of The J-Domain (Residues 2-76) In Th		7e-09
1bq0_A	103	J-Domain (Residues 1-77) Of The Escherichia Coli N-		8e-09
1bqz_A	77	J-Domain (Residues 1-77) Of The Escherichia Coli N-		8e-09
2ej7_A	82	Solution Structure Of The Dnaj Domain Of The Human		5e-08
2ctw_A	109	Solution Structure Of J-Domain From Mouse Dnaj Subf		9e-08
2dn9_A	79	Solution Structure Of J-Domain From The Dnaj Homolo		2e-07
2ctr_A	88	Solution Structure Of J-Domain From Human Dnaj Subf		2e-07
2lgw_A	99	Solution Structure Of The J Domain Of Hsj1a Length		5e-07
1hdj_A	77	Human Hsp40 (Hdj-1), Nmr Length = 77		5e-07
2ctp_A	78	Solution Structure Of J-Domain From Human Dnaj Subf		5e-07
2dmx_A	92	Solution Structure Of The J Domain Of Dnaj Homolog		5e-07
2lo1_A	71	Nmr Structure Of The Protein Bc008182, A Dnaj-Like		3e-06
2och_A	73	J-domain Of Dnj-12 From Caenorhabditis Elegans Leng		5e-06
2cug_A	88	Solution Structure Of The J Domain Of The Pseudo Dn		5e-06
3apo_A	780	Crystal Structure Of Full-Length Erdj5 Length = 780		1e-05
3apq_A	210	Crystal Structure Of J-Trx1 Fragment Of Erdj5 Lengt		1e-05
3lz8_A	329	Structure Of A Putative Chaperone Dnaj From Klebsie		3e-05
2y4t_A	450	Crystal Structure Of The Human Co-Chaperone P58(Ipk		3e-05
2y4u_A	450	Crystal Structure Of Human P58(Ipk) In Space Group		6e-05
2kqx_A	73	Nmr Structure Of The J-Domain (Residues 2-72) In Th		1e-04
2o37_A	92	J-Domain Of Sis1 Protein, Hsp40 Co-Chaperone From S		1e-04
2yua_A	99	Solution Structure Of The Dnaj Domain From Human Wi		7e-04

>pdb|1XBL|A Chain A, Nmr Structure Of The J-Domain (Residues 2-76) In The Escherichia Coli N-Terminal Fragment (Residues 2-108) Of The Molecular Chaperone Dnaj, 20 Structures Length = 107

Iteration: 1
 Score = 55.5 bits (132), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 26/52 (50%), Positives = 36/52 (69%)
Query: 34 KDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAYQ 85
          +DYY+IL V   A E EIR  Y RLA+K+HPD+ +    A ++F+EI EAY+
Sbjct: 3  QDYYEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYE 54

>pdb|1BQ0|A Chain A, J-Domain (Residues 1-77) Of The Escherichia Coli N-Terminal Fragment (Residues 1-104) Of The Molecular Chaperone Dnaj, Nmr, 20 Structures Length = 103

Iteration: 1
 Score = 55.5 bits (132), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 26/52 (50%), Positives = 36/52 (69%)
Query: 34 KDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAYQ 85
          +DYY+IL V   A E EIR  Y RLA+K+HPD+ +    A ++F+EI EAY+
Sbjct: 3  QDYYEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYE 54

>pdb|1BQZ|A Chain A, J-Domain (Residues 1-77) Of The Escherichia Coli N-Terminal Fragment (Residues 1-78) Of The Molecular Chaperone Dnaj, Nmr, 20 Structures Length = 77

Iteration: 1
 Score = 55.5 bits (132), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 26/52 (50%), Positives = 36/52 (69%)
Query: 34 KDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAYQ 85
          +DYY+IL V   A E EIR  Y RLA+K+HPD+ +    A ++F+EI EAY+
Sbjct: 3  QDYYEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYE 54

>pdb|2EJ7|A Chain A, Solution Structure Of The Dnaj Domain Of The Human Protein Hcg3, A Hypothetical Protein Tmp_locus_21 Length = 82

Iteration: 1
 Score = 52.8 bits (125), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 24/52 (46%), Positives = 38/52 (73%), Gaps = 1/52 (1%)
Query: 35 DYYKILEVDYDATEEEIRSNYIRLALKWHPDK-QKDRDCATSRFQEINEAYQ 85
          DYY++L+V   A+ E I+  Y +LALKWHPDK  ++++ A  RF+++ EAY+
Sbjct: 10 DYYEVLDVPRQASSEAIKKAYRKLALKWHPDKNPENKEEAERRFKQVAEAYE 61

>pdb|2CTW|A Chain A, Solution Structure Of J-Domain From Mouse Dnaj Subfamily C Menber 5 Length = 109

Iteration: 1
 Score = 52.0 bits (123), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 24/57 (42%), Positives = 37/57 (64%)
Query: 28 SLLAKPKDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAY 84
          SL    +  Y +L +D +AT ++I+ +Y +LALK+HPDK  D   A  +F+EIN A+
Sbjct: 11 SLSTSGESLYHVLGLDKNATSDDIKKSYRKLALKYHPDKNPDNPEAADKFKEINNAH 67

>pdb|2DN9|A Chain A, Solution Structure Of J-Domain From The Dnaj Homolog, Human Tid1 Protein Length = 79

Iteration: 1
 Score = 51.2 bits (121), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 23/51 (45%), Positives = 35/51 (68%)
Query: 35 DYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAYQ 85
          DYY+IL V  +A+++EI+  Y +LA K+HPD  KD   A  +F ++ EAY+
Sbjct: 8  DYYQILGVPRNASQKEIKKAYYQLAKKYHPDTNKDDPKAKEKFSQLAEAYE 58

>pdb|2CTR|A Chain A, Solution Structure Of J-Domain From Human Dnaj Subfamily B Menber 9 Length = 88

Iteration: 1
 Score = 50.4 bits (119), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 24/50 (48%), Positives = 35/50 (70%), Gaps = 1/50 (2%)
Query: 36 YYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAYQ 85
          YY IL V   A+E +I+  + +LA+K+HPDK K  D A ++F+EI EAY+
Sbjct: 9  YYDILGVPKSASERQIKKAFHKLAMKYHPDKNKSPD-AEAKFREIAEAYE 57

>pdb|2LGW|A Chain A, Solution Structure Of The J Domain Of Hsj1a Length = 99

Iteration: 1
 Score = 49.7 bits (117), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 23/51 (45%), Positives = 36/51 (70%), Gaps = 1/51 (1%)
Query: 36 YYKILEVDYDATEEEIRSNYIRLALKWHPDKQKD-RDCATSRFQEINEAYQ 85
          YY+IL+V   A+ ++I+  Y R AL+WHPDK  D ++ A  +F+E+ EAY+
Sbjct: 4  YYEILDVPRSASADDIKKAYRRKALQWHPDKNPDNKEFAEKKFKEVAEAYE 54

>pdb|1HDJ|A Chain A, Human Hsp40 (Hdj-1), Nmr Length = 77

Iteration: 1
 Score = 49.3 bits (116), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 25/51 (49%), Positives = 35/51 (68%), Gaps = 1/51 (1%)
Query: 34 KDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAY 84
          KDYY+ L +   A++EEI+  Y R AL++HPDK K+   A  +F+EI EAY
Sbjct: 3  KDYYQTLGLARGASDEEIKRAYRRQALRYHPDKNKE-PGAEEKFKEIAEAY 52

>pdb|2CTP|A Chain A, Solution Structure Of J-Domain From Human Dnaj Subfamily B Menber 12 Length = 78

Iteration: 1
 Score = 49.3 bits (116), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 24/50 (48%), Positives = 32/50 (64%), Gaps = 1/50 (2%)
Query: 35 DYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAY 84
          DYY+IL V   A++E+++  Y RLALK+HPDK      AT  F+ I  AY
Sbjct: 8  DYYEILGVSRGASDEDLKKAYRRLALKFHPDKN-HAPGATEAFKAIGTAY 56

>pdb|2DMX|A Chain A, Solution Structure Of The J Domain Of Dnaj Homolog Subfamily B Member 8 Length = 92

Iteration: 1
 Score = 49.3 bits (116), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 22/52 (42%), Positives = 37/52 (71%), Gaps = 1/52 (1%)
Query: 35 DYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKD-RDCATSRFQEINEAYQ 85
          +YY++L V   A+ E+I+  Y +LAL+WHPDK  D ++ A  +F+ ++EAY+
Sbjct: 10 NYYEVLGVQASASPEDIKKAYRKLALRWHPDKNPDNKEEAEKKFKLVSEAYE 61

>pdb|2LO1|A Chain A, Nmr Structure Of The Protein Bc008182, A Dnaj-Like Domain From Homo Sapiens Length = 71

Iteration: 1
 Score = 47.0 bits (110), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 22/56 (39%), Positives = 37/56 (66%), Gaps = 3/56 (5%)
Query: 30 LAKPKDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAYQ 85
          + K   YY +L V  +AT+EE++  Y +LALK+HPDK  +      +F++I++AY+
Sbjct: 2  MVKETTYYDVLGVKPNATQEELKKAYRKLALKYHPDKNPNEG---EKFKQISQAYE 54

>pdb|2OCH|A Chain A, J-domain Of Dnj-12 From Caenorhabditis Elegans Length = 73

Iteration: 1
 Score = 46.2 bits (108), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 21/56 (37%), Positives = 36/56 (64%), Gaps = 3/56 (5%)
Query: 30 LAKPKDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAYQ 85
          + K   YY +L V  DA++ E++  Y ++ALK+HPDK  D      +F++I++AY+
Sbjct: 4  MVKETGYYDVLGVKPDASDNELKKAYRKMALKFHPDKNPD---GAEQFKQISQAYE 56

>pdb|2CUG|A Chain A, Solution Structure Of The J Domain Of The Pseudo Dnaj Protein, Mouse Hypothetical Mkiaa0962 Length = 88

Iteration: 1
 Score = 46.2 bits (108), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 25/58 (43%), Positives = 37/58 (63%), Gaps = 1/58 (1%)
Query: 28 SLLAKPKDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAYQ 85
          SL A   D Y++L V   A++ +I+  Y +LA +WHPDK KD   A  RF +I++AY+
Sbjct: 11 SLSALDFDPYRVLGVSRTASQADIKKAYKKLAREWHPDKNKD-PGAEDRFIQISKAYE 67

>pdb|3APO|A Chain A, Crystal Structure Of Full-Length Erdj5 Length = 780

Iteration: 1
 Score = 45.1 bits (105), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 21/52 (40%), Positives = 31/52 (59%)
Query: 34 KDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAYQ 85
          +++Y +L V   A+  EIR  + +LALK HPDK  +   A   F +IN AY+
Sbjct: 21 QNFYSLLGVSKTASSREIRQAFKKLALKLHPDKNPNNPNAHGDFLKINRAYE 72

>pdb|3APQ|A Chain A, Crystal Structure Of J-Trx1 Fragment Of Erdj5 Length = 210

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 21/52 (40%), Positives = 31/52 (59%)
Query: 34 KDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAYQ 85
          +++Y +L V   A+  EIR  + +LALK HPDK  +   A   F +IN AY+
Sbjct: 2  QNFYSLLGVSKTASSREIRQAFKKLALKLHPDKNPNNPNAHGDFLKINRAYE 53

>pdb|3LZ8|A Chain A, Structure Of A Putative Chaperone Dnaj From Klebsiella Pneumoniae Subsp. Pneumoniae Mgh 78578 At 2.9 A Resolution. Length = 329

Iteration: 1
 Score = 43.5 bits (101), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 25/63 (39%), Positives = 38/63 (60%), Gaps = 1/63 (1%)
Query: 23 NFDFLSLLAKPKDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINE 82
          N  F S   + KDYY IL V      + I++ Y RLA K+HPD  K+ D A ++F+++ E
Sbjct: 17 NLYFQSNAMELKDYYAILGVQPTDDLKTIKTAYRRLARKYHPDVSKEND-AEAKFKDLAE 75
Query: 83 AYQ 85
          A++
Sbjct: 76 AWE 78

>pdb|2Y4T|A Chain A, Crystal Structure Of The Human Co-Chaperone P58(Ipk) Length = 450

Iteration: 1
 Score = 43.5 bits (101), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 26/71 (36%), Positives = 40/71 (56%), Gaps = 8/71 (11%)
Query: 2   MWDEWV-------DCNNNDEQTQQDSHVNFDFLSLLAKPKDYYKILEVDYDATEEEIRSN 54
           M+DE +       + N ND+Q ++        L   ++ +DYYKIL V  +A ++EI   
Sbjct: 344 MYDEAIQDYETAQEHNENDQQIREGLEKAQRLLKQ-SQKRDYYKILGVKRNAKKQEIIKA 402
Query: 55  YIRLALKWHPD 65
           Y +LAL+WHPD
Sbjct: 403 YRKLALQWHPD 413

>pdb|2Y4U|A Chain A, Crystal Structure Of Human P58(Ipk) In Space Group P312 Length = 450

Iteration: 1
 Score = 42.7 bits (99), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 23/56 (41%), Positives = 34/56 (60%), Gaps = 1/56 (1%)
Query: 10  NNNDEQTQQDSHVNFDFLSLLAKPKDYYKILEVDYDATEEEIRSNYIRLALKWHPD 65
           N ND+Q ++        L   ++ +DYYKIL V  +A ++EI   Y +LAL+WHPD
Sbjct: 359 NENDQQIREGLEKAQRLLKQ-SQKRDYYKILGVKRNAKKQEIIKAYRKLALQWHPD 413

>pdb|2KQX|A Chain A, Nmr Structure Of The J-Domain (Residues 2-72) In The Escherichia Coli Cbpa Length = 73

Iteration: 1
 Score = 42.0 bits (97), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 23/52 (44%), Positives = 34/52 (65%), Gaps = 1/52 (1%)
Query: 34 KDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAYQ 85
          KDYY I+ V      + I++ Y RLA K+HPD  K+ D A +RF+E+ EA++
Sbjct: 5  KDYYAIMGVKPTDDLKTIKTAYRRLARKYHPDVSKEPD-AEARFKEVAEAWE 55

>pdb|2O37|A Chain A, J-Domain Of Sis1 Protein, Hsp40 Co-Chaperone From Saccharomyces Cerevisiae Length = 92

Iteration: 1
 Score = 41.6 bits (96), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 21/56 (37%), Positives = 33/56 (58%), Gaps = 3/56 (5%)
Query: 30 LAKPKDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAYQ 85
          + K    Y +L V   A E+E++  Y + ALK+HPDK       T +F+EI+EA++
Sbjct: 4  MVKETKLYDLLGVSPSANEQELKKGYRKAALKYHPDKP---TGDTEKFKEISEAFE 56

>pdb|2YUA|A Chain A, Solution Structure Of The Dnaj Domain From Human Williams- Beuren Syndrome Chromosome Region 18 Protein Length = 99

Iteration: 1
 Score = 38.9 bits (89), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 17/48 (35%), Positives = 26/48 (54%)
Query: 37 YKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAY 84
          Y +L V   AT+ +I++ Y R    +HPD+      A  RF  I++AY
Sbjct: 20 YDLLGVPSTATQAQIKAAYYRQCFLYHPDRNSGSAEAAERFTRISQAY 67

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	91
3lz8_A	329	Putative chaperone DNAJ; structure genomics, struc	9e-20
1hdj_A	77	Human HSP40, HDJ-1; molecular chaperone; NMR {Homo	7e-19
2ctw_A	109	DNAJ homolog subfamily C member 5; J-domain, chape	1e-18
2cug_A	88	Mkiaa0962 protein; DNAJ-like domain, structural ge	1e-18
2lgw_A	99	DNAJ homolog subfamily B member 2; J domain, HSJ1A	2e-18
2dmx_A	92	DNAJ homolog subfamily B member 8; DNAJ J domain,	6e-18
1iur_A	88	KIAA0730 protein; DNAJ like domain, riken structur	1e-17
3apq_A	210	DNAJ homolog subfamily C member 10; thioredoxin fo	1e-17
2ej7_A	82	HCG3 gene; HCG3 protein, DNAJ domain, NPPSFA, nati	2e-17
2yua_A	99	Williams-beuren syndrome chromosome region 18 prot	2e-17
2ys8_A	90	RAB-related GTP-binding protein RABJ; DNAJ domain,	2e-17
2ctq_A	112	DNAJ homolog subfamily C member 12; J-domain, chap	4e-17
2ctp_A	78	DNAJ homolog subfamily B member 12; J-domain, chap	4e-17
1bq0_A	103	DNAJ, HSP40; chaperone, heat shock, protein foldin	7e-17
2ctr_A	88	DNAJ homolog subfamily B member 9; J-domain, chape	1e-16
2dn9_A	79	DNAJ homolog subfamily A member 3; J-domain, TID1,	3e-16
2och_A	73	Hypothetical protein DNJ-12; HSP40, J-domain, chap	3e-16
2o37_A	92	Protein SIS1; HSP40, J-domain, cochaperone, APC900	4e-16
2l6l_A	155	DNAJ homolog subfamily C member 24; DPH4, Zn-CSL,	4e-16
1wjz_A	94	1700030A21RIK protein; J-domain, DNAJ like protein	8e-16
2qsa_A	109	DNAJ homolog DNJ-2; J-domain, HSP40, APC90001.8, s	2e-14
3apo_A	780	DNAJ homolog subfamily C member 10; PDI family, th	6e-14
1gh6_A	114	Large T antigen; tumor suppressor, oncoprotein, an	5e-12
2pf4_E	174	Small T antigen; PP2A, SV40, DNAJ, aalpha subunit,	6e-12
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	1e-11
3hho_A	174	CO-chaperone protein HSCB homolog; structural geno	4e-10
2guz_A	71	Mitochondrial import inner membrane translocase su	5e-09
1faf_A	79	Large T antigen; J domain, HPD motif, anti-paralle	3e-08
1fpo_A	171	HSC20, chaperone protein HSCB; molecular chaperone	7e-08
1n4c_A	182	Auxilin; four helix bundle, protein binding; NMR {	2e-07
3ag7_A	106	Putative uncharacterized protein F9E10.5; J-domain	4e-07
3uo3_A	181	J-type CO-chaperone JAC1, mitochondrial; structura	9e-07
3bvo_A	207	CO-chaperone protein HSCB, mitochondrial precurso;	6e-06
2qwo_B	92	Putative tyrosine-protein phosphatase auxilin; cha	9e-06

>3lz8_A Putative chaperone DNAJ; structure genomics, structural genomics, PSI-2, protein STRU initiative; 2.90A {Klebsiella pneumoniae subsp} PDB: 2kqx_A Length = 329

 Score = 80.0 bits (198), Expect = 9e-20
 Identities = 22/51 (43%), Positives = 33/51 (64%), Gaps = 1/51 (1%)

Query: 34 KDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAY 84
          KDYY IL V      + I++ Y RLA K+HPD  K+ D A ++F+++ EA+
Sbjct: 28 KDYYAILGVQPTDDLKTIKTAYRRLARKYHPDVSKEND-AEAKFKDLAEAW 77

>1hdj_A Human HSP40, HDJ-1; molecular chaperone; NMR {Homo sapiens} SCOP: a.2.3.1 Length = 77

 Score = 72.2 bits (178), Expect = 7e-19
 Identities = 25/52 (48%), Positives = 35/52 (67%), Gaps = 1/52 (1%)

Query: 34 KDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAYQ 85
          KDYY+ L +   A++EEI+  Y R AL++HPDK K+   A  +F+EI EAY 
Sbjct: 3  KDYYQTLGLARGASDEEIKRAYRRQALRYHPDKNKEPG-AEEKFKEIAEAYD 53

>2ctw_A DNAJ homolog subfamily C member 5; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Mus musculus} Length = 109

 Score = 72.8 bits (179), Expect = 1e-18
 Identities = 24/58 (41%), Positives = 37/58 (63%)

Query: 28 SLLAKPKDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAYQ 85
          SL    +  Y +L +D +AT ++I+ +Y +LALK+HPDK  D   A  +F+EIN A+ 
Sbjct: 11 SLSTSGESLYHVLGLDKNATSDDIKKSYRKLALKYHPDKNPDNPEAADKFKEINNAHA 68

>2cug_A Mkiaa0962 protein; DNAJ-like domain, structural genomics, molecular chaperone, NPPSFA; NMR {Mus musculus} Length = 88

 Score = 72.0 bits (177), Expect = 1e-18
 Identities = 25/60 (41%), Positives = 37/60 (61%), Gaps = 1/60 (1%)

Query: 26 FLSLLAKPKDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAYQ 85
            SL A   D Y++L V   A++ +I+  Y +LA +WHPDK KD   A  RF +I++AY+
Sbjct: 9  LQSLSALDFDPYRVLGVSRTASQADIKKAYKKLAREWHPDKNKDPG-AEDRFIQISKAYE 67

>2lgw_A DNAJ homolog subfamily B member 2; J domain, HSJ1A, CO-chaperon, chaperone; NMR {Homo sapiens} Length = 99

 Score = 71.6 bits (176), Expect = 2e-18
 Identities = 22/53 (41%), Positives = 36/53 (67%), Gaps = 1/53 (1%)

Query: 34 KDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQK-DRDCATSRFQEINEAYQ 85
            YY+IL+V   A+ ++I+  Y R AL+WHPDK   +++ A  +F+E+ EAY+
Sbjct: 2  ASYYEILDVPRSASADDIKKAYRRKALQWHPDKNPDNKEFAEKKFKEVAEAYE 54

>2dmx_A DNAJ homolog subfamily B member 8; DNAJ J domain, helix-turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 92

 Score = 70.4 bits (173), Expect = 6e-18
 Identities = 21/53 (39%), Positives = 37/53 (69%), Gaps = 1/53 (1%)

Query: 34 KDYYKILEVDYDATEEEIRSNYIRLALKWHPDK-QKDRDCATSRFQEINEAYQ 85
           +YY++L V   A+ E+I+  Y +LAL+WHPDK   +++ A  +F+ ++EAY+
Sbjct: 9  ANYYEVLGVQASASPEDIKKAYRKLALRWHPDKNPDNKEEAEKKFKLVSEAYE 61

>1iur_A KIAA0730 protein; DNAJ like domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Homo sapiens} SCOP: a.2.3.1 Length = 88

 Score = 69.7 bits (171), Expect = 1e-17
 Identities = 16/53 (30%), Positives = 25/53 (47%), Gaps = 1/53 (1%)

Query: 34 KDYYKILEVDYDATEEEIRSNYIRLALKWHPDK-QKDRDCATSRFQEINEAYQ 85
          K+   ++E  +   E E +    RL LKWHPDK  ++ D A   F+ +     
Sbjct: 16 KEVTSVVEQAWKLPESERKKIIRRLYLKWHPDKNPENHDIANEVFKHLQNEIN 68

>3apq_A DNAJ homolog subfamily C member 10; thioredoxin fold, DNAJ domain, endoplasmic reticulum, oxidor; 1.84A {Mus musculus} Length = 210

 Score = 72.6 bits (178), Expect = 1e-17
 Identities = 21/52 (40%), Positives = 31/52 (59%)

Query: 34 KDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAYQ 85
          +++Y +L V   A+  EIR  + +LALK HPDK  +   A   F +IN AY+
Sbjct: 2  QNFYSLLGVSKTASSREIRQAFKKLALKLHPDKNPNNPNAHGDFLKINRAYE 53

>2ej7_A HCG3 gene; HCG3 protein, DNAJ domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 82

 Score = 69.2 bits (170), Expect = 2e-17
 Identities = 24/53 (45%), Positives = 38/53 (71%), Gaps = 1/53 (1%)

Query: 34 KDYYKILEVDYDATEEEIRSNYIRLALKWHPDK-QKDRDCATSRFQEINEAYQ 85
           DYY++L+V   A+ E I+  Y +LALKWHPDK  ++++ A  RF+++ EAY+
Sbjct: 9  VDYYEVLDVPRQASSEAIKKAYRKLALKWHPDKNPENKEEAERRFKQVAEAYE 61

>2yua_A Williams-beuren syndrome chromosome region 18 protein; J domain, all helix protein, chaperone, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 99

 Score = 69.8 bits (171), Expect = 2e-17
 Identities = 17/52 (32%), Positives = 26/52 (50%)

Query: 34 KDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAYQ 85
             Y +L V   AT+ +I++ Y R    +HPD+      A  RF  I++AY 
Sbjct: 17 TALYDLLGVPSTATQAQIKAAYYRQCFLYHPDRNSGSAEAAERFTRISQAYV 68

>2ys8_A RAB-related GTP-binding protein RABJ; DNAJ domain, RAS-associated protein RAP1, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 90

 Score = 69.4 bits (170), Expect = 2e-17
 Identities = 15/52 (28%), Positives = 25/52 (48%), Gaps = 1/52 (1%)

Query: 34 KDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAYQ 85
          KD + +L V   A+ +E+   Y +LA+  HPDK      +   F+ +  A  
Sbjct: 27 KDSWDMLGVKPGASRDEVNKAYRKLAVLLHPDKCVAPG-SEDAFKAVVNART 77

>2ctq_A DNAJ homolog subfamily C member 12; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 112

 Score = 69.0 bits (169), Expect = 4e-17
 Identities = 18/70 (25%), Positives = 34/70 (48%)

Query: 16 TQQDSHVNFDFLSLLAKPKDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRDCATS 75
          +   S ++          +DYY +L  D  ++ E+I + +   AL+ HPDK  +   A  
Sbjct: 2  SSGSSGMDAILNYRSEDTEDYYTLLGCDELSSVEQILAEFKVRALECHPDKHPENPKAVE 61

Query: 76 RFQEINEAYQ 85
           FQ++ +A +
Sbjct: 62 TFQKLQKAKE 71

>2ctp_A DNAJ homolog subfamily B member 12; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 78

 Score = 68.0 bits (167), Expect = 4e-17
 Identities = 24/52 (46%), Positives = 32/52 (61%), Gaps = 1/52 (1%)

Query: 34 KDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAYQ 85
           DYY+IL V   A++E+++  Y RLALK+HPDK      AT  F+ I  AY 
Sbjct: 7  GDYYEILGVSRGASDEDLKKAYRRLALKFHPDKNHAPG-ATEAFKAIGTAYA 57

>1bq0_A DNAJ, HSP40; chaperone, heat shock, protein folding, DNAK; NMR {Escherichia coli} SCOP: a.2.3.1 PDB: 1xbl_A 1bqz_A Length = 103

 Score = 68.0 bits (167), Expect = 7e-17
 Identities = 26/52 (50%), Positives = 36/52 (69%)

Query: 34 KDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAYQ 85
          +DYY+IL V   A E EIR  Y RLA+K+HPD+ +    A ++F+EI EAY+
Sbjct: 3  QDYYEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYE 54

>2ctr_A DNAJ homolog subfamily B member 9; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 88

 Score = 66.9 bits (164), Expect = 1e-16
 Identities = 24/52 (46%), Positives = 35/52 (67%), Gaps = 1/52 (1%)

Query: 34 KDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAYQ 85
            YY IL V   A+E +I+  + +LA+K+HPDK K  D A ++F+EI EAY+
Sbjct: 7  GSYYDILGVPKSASERQIKKAFHKLAMKYHPDKNKSPD-AEAKFREIAEAYE 57

>2dn9_A DNAJ homolog subfamily A member 3; J-domain, TID1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 79

 Score = 66.1 bits (162), Expect = 3e-16
 Identities = 23/52 (44%), Positives = 35/52 (67%)

Query: 34 KDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAYQ 85
           DYY+IL V  +A+++EI+  Y +LA K+HPD  KD   A  +F ++ EAY+
Sbjct: 7  GDYYQILGVPRNASQKEIKKAYYQLAKKYHPDTNKDDPKAKEKFSQLAEAYE 58

>2och_A Hypothetical protein DNJ-12; HSP40, J-domain, chaperone, APC90013.2, structural genomics, protein structure initiative; 1.86A {Caenorhabditis elegans} PDB: 2lo1_A Length = 73

 Score = 65.7 bits (161), Expect = 3e-16
 Identities = 21/55 (38%), Positives = 35/55 (63%), Gaps = 3/55 (5%)

Query: 31 AKPKDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAYQ 85
           K   YY +L V  DA++ E++  Y ++ALK+HPDK  D      +F++I++AY+
Sbjct: 5  VKETGYYDVLGVKPDASDNELKKAYRKMALKFHPDKNPD---GAEQFKQISQAYE 56

>2o37_A Protein SIS1; HSP40, J-domain, cochaperone, APC90055.5, structural genomics, PSI-2, protein structure initiative; 1.25A {Saccharomyces cerevisiae} Length = 92

 Score = 65.8 bits (161), Expect = 4e-16
 Identities = 21/58 (36%), Positives = 34/58 (58%), Gaps = 3/58 (5%)

Query: 28 SLLAKPKDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAYQ 85
          + + K    Y +L V   A E+E++  Y + ALK+HPDK       T +F+EI+EA++
Sbjct: 2  NAMVKETKLYDLLGVSPSANEQELKKGYRKAALKYHPDKPTG---DTEKFKEISEAFE 56

>2l6l_A DNAJ homolog subfamily C member 24; DPH4, Zn-CSL, J-domain, chaperone; NMR {Homo sapiens} Length = 155

 Score = 67.6 bits (165), Expect = 4e-16
 Identities = 19/58 (32%), Positives = 30/58 (51%), Gaps = 6/58 (10%)

Query: 34 KDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRDC------ATSRFQEINEAYQ 85
          KD+Y IL  D  A   +++  Y +L L +HPDKQ              +F EI++A++
Sbjct: 10 KDWYSILGADPSANISDLKQKYQKLILMYHPDKQSTDVPAGTVEECVQKFIEIDQAWK 67

>1wjz_A 1700030A21RIK protein; J-domain, DNAJ like protein, structural genomics, riken structural genomics/proteomics initiative, RSGI, chaperone; NMR {Mus musculus} SCOP: a.2.3.1 Length = 94

 Score = 65.1 bits (159), Expect = 8e-16
 Identities = 19/58 (32%), Positives = 31/58 (53%), Gaps = 6/58 (10%)

Query: 34 KDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKD------RDCATSRFQEINEAYQ 85
          KD+Y IL  D  A   +++  Y +L L +HPDKQ         +    +F EI++A++
Sbjct: 16 KDWYSILGADPSANMSDLKQKYQKLILLYHPDKQSADVPAGTMEECMQKFIEIDQAWK 73

>2qsa_A DNAJ homolog DNJ-2; J-domain, HSP40, APC90001.8, structural genomics, PSI-2, Pro structure initiative; 1.68A {Caenorhabditis elegans} Length = 109

 Score = 62.0 bits (151), Expect = 2e-14
 Identities = 18/56 (32%), Positives = 33/56 (58%), Gaps = 4/56 (7%)

Query: 34 KDYYKILEVDYDA-TEEEIRSNYIRLALKWHPDKQKDRD---CATSRFQEINEAYQ 85
          ++ Y +LEV+ +   ++++   Y  LA K HPD+ K+++    A  RF+ I  AY+
Sbjct: 15 ENCYDVLEVNREEFDKQKLAKAYRALARKHHPDRVKNKEEKLLAEERFRVIATAYE 70

>3apo_A DNAJ homolog subfamily C member 10; PDI family, thioredoxin, endoplasmic reticulum, oxidoreducta; 2.40A {Mus musculus} Length = 780

 Score = 64.4 bits (156), Expect = 6e-14
 Identities = 22/69 (31%), Positives = 34/69 (49%), Gaps = 1/69 (1%)

Query: 16 TQQDSHVNFDFLSLLAKPKDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRDCATS 75
          +    H +   +      +++Y +L V   A+  EIR  + +LALK HPDK  +   A  
Sbjct: 4  SHHHHHHSSGHIEGRHD-QNFYSLLGVSKTASSREIRQAFKKLALKLHPDKNPNNPNAHG 62

Query: 76 RFQEINEAY 84
           F +IN AY
Sbjct: 63 DFLKINRAY 71

>1gh6_A Large T antigen; tumor suppressor, oncoprotein, antitumor protein; 3.20A {Simian virus 40} SCOP: a.2.3.1 Length = 114

 Score = 56.0 bits (135), Expect = 5e-12
 Identities = 11/54 (20%), Positives = 25/54 (46%), Gaps = 6/54 (11%)

Query: 34 KDYYKILEVDYDA--TEEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAYQ 85
               +L ++  A      +R  Y++   ++HPDK  D +    + +++N  Y+
Sbjct: 8  LQLMDLLGLERSAWGNIPLMRKAYLKKCKEFHPDKGGDEE----KMKKMNTLYK 57

>2pf4_E Small T antigen; PP2A, SV40, DNAJ, aalpha subunit, hydrolase regulat protein complex; 3.10A {Simian virus 40} PDB: 2pkg_C Length = 174

 Score = 57.2 bits (138), Expect = 6e-12
 Identities = 12/63 (19%), Positives = 28/63 (44%), Gaps = 6/63 (9%)

Query: 25 DFLSLLAKPKDYYKILEVDYDA--TEEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINE 82
          D +    +      +L ++  A      +R  Y++   ++HPDK  D +    + +++N 
Sbjct: 2  DKVLNREESLQLMDLLGLERSAWGNIPLMRKAYLKKCKEFHPDKGGDEE----KMKKMNT 57

Query: 83 AYQ 85
           Y+
Sbjct: 58 LYK 60

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 57.8 bits (140), Expect = 1e-11
 Identities = 22/57 (38%), Positives = 35/57 (61%), Gaps = 3/57 (5%)

Query: 31  AKPKDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKD---RDCATSRFQEINEAY 84
           ++ +DYYKIL V  +A ++EI   Y +LAL+WHPD  ++   +  A  +F +I  A 
Sbjct: 379 SQKRDYYKILGVKRNAKKQEIIKAYRKLALQWHPDNFQNEEEKKKAEKKFIDIAAAK 435

>2guz_A Mitochondrial import inner membrane translocase subunit TIM14; DNAJ-fold, chaperone, protein transport; HET: FLC; 2.00A {Saccharomyces cerevisiae} Length = 71

 Score = 47.3 bits (113), Expect = 5e-09
 Identities = 13/53 (24%), Positives = 26/53 (49%), Gaps = 5/53 (9%)

Query: 34 KDYYKILEVDYDA-TEEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAYQ 85
          K+  +IL +  +  T+++++  + ++ L  HPDK            +INEA  
Sbjct: 14 KEALQILNLTENTLTKKKLKEVHRKIMLANHPDKGGSPF----LATKINEAKD 62

>1faf_A Large T antigen; J domain, HPD motif, anti-parallel hairpin of helices, viral protein; NMR {Murine polyomavirus} SCOP: a.2.3.1 Length = 79

 Score = 45.7 bits (108), Expect = 3e-08
 Identities = 11/57 (19%), Positives = 23/57 (40%), Gaps = 6/57 (10%)

Query: 31 AKPKDYYKILEVDYDA--TEEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAYQ 85
          A  +   ++L++          ++  Y + +L  HPDK        +  QE+N  + 
Sbjct: 8  ADKERLLELLKLPRQLWGDFGRMQQAYKQQSLLLHPDKGGS----HALMQELNSLWG 60

>1fpo_A HSC20, chaperone protein HSCB; molecular chaperone; 1.80A {Escherichia coli} SCOP: a.2.3.1 a.23.1.1 Length = 171

 Score = 46.1 bits (109), Expect = 7e-08
 Identities = 14/58 (24%), Positives = 26/58 (44%), Gaps = 7/58 (12%)

Query: 35 DYYKIL--EVDYDATEEEIRSNYIRLALKWHPDK-----QKDRDCATSRFQEINEAYQ 85
          DY+ +      Y    + +   +  L  ++HPDK     Q ++  A  +   IN+A+Q
Sbjct: 2  DYFTLFGLPARYQLDTQALSLRFQDLQRQYHPDKFASGSQAEQLAAVQQSATINQAWQ 59

>1n4c_A Auxilin; four helix bundle, protein binding; NMR {Bos taurus} SCOP: a.2.3.1 PDB: 1xi5_J Length = 182

 Score = 45.6 bits (107), Expect = 2e-07
 Identities = 17/64 (26%), Positives = 30/64 (46%), Gaps = 8/64 (12%)

Query: 35  DYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRD---CATSRFQEINEAY-----QG 86
             +K + +    T E+++  Y +  L  HPDK   +     A   F E+N+A+     QG
Sbjct: 118 TKWKPVGMADLVTPEQVKKVYRKAVLVVHPDKATGQPYEQYAKMIFMELNDAWSEFENQG 177

Query: 87  KRSL 90
           ++ L
Sbjct: 178 QKPL 181

>3ag7_A Putative uncharacterized protein F9E10.5; J-domain, AN auxilin-like J-domain containing protein, JAC1, chloroplast accumulation response; 1.80A {Arabidopsis thaliana} Length = 106

 Score = 43.1 bits (101), Expect = 4e-07
 Identities = 14/65 (21%), Positives = 25/65 (38%), Gaps = 7/65 (10%)

Query: 27 LSLLAKPKDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRDC-------ATSRFQE 79
          L  +      +K + +        +R +Y R  L  HPDK + +         A   F+ 
Sbjct: 33 LQYILWSGSGWKPVPLMDMIEGNAVRKSYQRALLILHPDKLQQKGASANQKYMAEKVFEL 92

Query: 80 INEAY 84
          + EA+
Sbjct: 93 LQEAW 97

>3uo3_A J-type CO-chaperone JAC1, mitochondrial; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, J-protein; 1.85A {Saccharomyces cerevisiae} PDB: 3uo2_A Length = 181

 Score = 43.4 bits (102), Expect = 9e-07
 Identities = 10/60 (16%), Positives = 23/60 (38%), Gaps = 10/60 (16%)

Query: 33 PKDYYKILEVD-------YDATEEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAYQ 85
             +Y++           +   +  +R  Y +L  + HPD  +     + +   +N+AY 
Sbjct: 10 TSTFYELFPKTFPKKLPIWTIDQSRLRKEYRQLQAQHHPDMAQQ---GSEQSSTLNQAYH 66

>3bvo_A CO-chaperone protein HSCB, mitochondrial precurso; structural genomics medical relev protein structure initiative, PSI-2; 3.00A {Homo sapiens} Length = 207

 Score = 41.3 bits (96), Expect = 6e-06
 Identities = 12/63 (19%), Positives = 26/63 (41%), Gaps = 7/63 (11%)

Query: 30  LAKPKDYYKI--LEVDYDATEEEIRSNYIRLALKWHPDK-----QKDRDCATSRFQEINE 82
               +DY+ +      +     +++  Y +L    HPD      Q ++D +      +N+
Sbjct: 39  PDPTRDYFSLMDCNRSFRVDTAKLQHRYQQLQRLVHPDFFSQRSQTEKDFSEKHSTLVND 98

Query: 83  AYQ 85
           AY+
Sbjct: 99  AYK 101

>2qwo_B Putative tyrosine-protein phosphatase auxilin; chaperone-cochaperone complex, ATP-binding, nucleotide-bindi nucleus, phosphorylation, stress response; HET: ADP; 1.70A {Bos taurus} PDB: 2qwp_B* 2qwq_B* 2qwr_B* 2qwn_B* 1nz6_A Length = 92

 Score = 39.6 bits (92), Expect = 9e-06
 Identities = 13/51 (25%), Positives = 24/51 (47%), Gaps = 3/51 (5%)

Query: 37 YKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRD---CATSRFQEINEAY 84
          +K + +    T E+++  Y +  L  HP K   +     A   F E+N+A+
Sbjct: 36 WKPVGMADLVTPEQVKKVYRKAVLVVHPCKATGQPYEQYAKMIFMELNDAW 86

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	91
2ys8_A	90	RAB-related GTP-binding protein RABJ; DNAJ domain,	99.86
2dn9_A	79	DNAJ homolog subfamily A member 3; J-domain, TID1,	99.84
2yua_A	99	Williams-beuren syndrome chromosome region 18 prot	99.83
1hdj_A	77	Human HSP40, HDJ-1; molecular chaperone; NMR {Homo	99.83
2ctr_A	88	DNAJ homolog subfamily B member 9; J-domain, chape	99.83
2ctp_A	78	DNAJ homolog subfamily B member 12; J-domain, chap	99.83
2cug_A	88	Mkiaa0962 protein; DNAJ-like domain, structural ge	99.83
2ctw_A	109	DNAJ homolog subfamily C member 5; J-domain, chape	99.82
2ctq_A	112	DNAJ homolog subfamily C member 12; J-domain, chap	99.82
2och_A	73	Hypothetical protein DNJ-12; HSP40, J-domain, chap	99.82
2ej7_A	82	HCG3 gene; HCG3 protein, DNAJ domain, NPPSFA, nati	99.82
1iur_A	88	KIAA0730 protein; DNAJ like domain, riken structur	99.82
1wjz_A	94	1700030A21RIK protein; J-domain, DNAJ like protein	99.81
2dmx_A	92	DNAJ homolog subfamily B member 8; DNAJ J domain,	99.81
2qwo_B	92	Putative tyrosine-protein phosphatase auxilin; cha	99.81
2lgw_A	99	DNAJ homolog subfamily B member 2; J domain, HSJ1A	99.81
2o37_A	92	Protein SIS1; HSP40, J-domain, cochaperone, APC900	99.8
2qsa_A	109	DNAJ homolog DNJ-2; J-domain, HSP40, APC90001.8, s	99.8
1bq0_A	103	DNAJ, HSP40; chaperone, heat shock, protein foldin	99.8
1faf_A	79	Large T antigen; J domain, HPD motif, anti-paralle	99.79
3ag7_A	106	Putative uncharacterized protein F9E10.5; J-domain	99.78
2guz_A	71	Mitochondrial import inner membrane translocase su	99.78
3apq_A	210	DNAJ homolog subfamily C member 10; thioredoxin fo	99.77
2l6l_A	155	DNAJ homolog subfamily C member 24; DPH4, Zn-CSL,	99.76
3hho_A	174	CO-chaperone protein HSCB homolog; structural geno	99.75
3bvo_A	207	CO-chaperone protein HSCB, mitochondrial precurso;	99.75
1n4c_A	182	Auxilin; four helix bundle, protein binding; NMR {	99.74
1gh6_A	114	Large T antigen; tumor suppressor, oncoprotein, an	99.73
1fpo_A	171	HSC20, chaperone protein HSCB; molecular chaperone	99.72
3lz8_A	329	Putative chaperone DNAJ; structure genomics, struc	99.7
2pf4_E	174	Small T antigen; PP2A, SV40, DNAJ, aalpha subunit,	99.66
3uo3_A	181	J-type CO-chaperone JAC1, mitochondrial; structura	99.62
3apo_A	780	DNAJ homolog subfamily C member 10; PDI family, th	99.59
2guz_B	65	Mitochondrial import inner membrane translocase su	99.37
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	98.95
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	94.75

>2ys8_A RAB-related GTP-binding protein RABJ; DNAJ domain, RAS-associated protein RAP1, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.86  E-value=1.2e-21  Score=117.62  Aligned_cols=67  Identities=24%  Similarity=0.358  Sum_probs=59.1

Q ss_pred             chhhhhhhhcCCCCchhhhcCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHhcC
Q 034568           22 VNFDFLSLLAKPKDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAYQGKRS   89 (91)
Q Consensus        22 ~~~~~~~~~~~~~~~y~iLgl~~~a~~~~Ikkayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~~L~~   89 (91)
                      ..+.....+....++|+||||+++++.++||++||++++++|||+++++. +.++|++|++||++|++
T Consensus        15 ~~~~~~~~~~~~~~~y~iLgv~~~as~~eIk~aYr~la~~~HPDk~~~~~-~~~~f~~i~~Ay~~L~d   81 (90)
T 2ys8_A           15 EQADAIRRIRNSKDSWDMLGVKPGASRDEVNKAYRKLAVLLHPDKCVAPG-SEDAFKAVVNARTALLK   81 (90)
T ss_dssp             HHHHHHHHHHTCSSHHHHHTCCTTCCHHHHHHHHHHHHHHHCTTTCCCTT-HHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcCCCHHHHcCcCCCCCHHHHHHHHHHHHHHHCcCCCCCcc-HHHHHHHHHHHHHHHCC
Confidence            34555556667899999999999999999999999999999999998754 88999999999999986

>2dn9_A DNAJ homolog subfamily A member 3; J-domain, TID1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.84  E-value=3.1e-21  Score=112.86  Aligned_cols=58  Identities=40%  Similarity=0.684  Sum_probs=54.2

Q ss_pred             CCCCchhhhcCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHhcC
Q 034568           32 KPKDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAYQGKRS   89 (91)
Q Consensus        32 ~~~~~y~iLgl~~~a~~~~Ikkayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~~L~~   89 (91)
                      ...++|+||||+++++.++||++||++++++|||++++.+.+.+.|+.|++||++|++
T Consensus         5 ~~~~~y~iLgv~~~a~~~~Ik~ayr~l~~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~d   62 (79)
T 2dn9_A            5 SSGDYYQILGVPRNASQKEIKKAYYQLAKKYHPDTNKDDPKAKEKFSQLAEAYEVLSD   62 (79)
T ss_dssp             CCSCHHHHHTCCTTCCHHHHHHHHHHHHHHTCTTTCSSCTTHHHHHHHHHHHHHHHHS
T ss_pred             CCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCHHHHHHHHHHHHHHHHHCC
Confidence            4679999999999999999999999999999999998755689999999999999987

>2yua_A Williams-beuren syndrome chromosome region 18 protein; J domain, all helix protein, chaperone, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.83  E-value=6.8e-21  Score=115.92  Aligned_cols=59  Identities=31%  Similarity=0.494  Sum_probs=54.9

Q ss_pred             cCCCCchhhhcCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHhcC
Q 034568           31 AKPKDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAYQGKRS   89 (91)
Q Consensus        31 ~~~~~~y~iLgl~~~a~~~~Ikkayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~~L~~   89 (91)
                      ....++|+||||+++++.++||++||++++++|||++++.+.+.++|+.|++||++|+|
T Consensus        14 ~~~~~~Y~vLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~~L~d   72 (99)
T 2yua_A           14 YSRTALYDLLGVPSTATQAQIKAAYYRQCFLYHPDRNSGSAEAAERFTRISQAYVVLGS   72 (99)
T ss_dssp             SCSSHHHHHHTCCTTCCHHHHHHHHHHHHHHSCTTTCSSCSHHHHHHHHHHHHHHHTTS
T ss_pred             CCccCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCHHHHHHHHHHHHHHHHHCC
Confidence            35679999999999999999999999999999999998666689999999999999987

>1hdj_A Human HSP40, HDJ-1; molecular chaperone; NMR {Homo sapiens} SCOP: a.2.3.1

Probab=99.83  E-value=9.9e-21  Score=110.27  Aligned_cols=55  Identities=45%  Similarity=0.770  Sum_probs=51.9

Q ss_pred             CCchhhhcCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHhcC
Q 034568           34 KDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAYQGKRS   89 (91)
Q Consensus        34 ~~~y~iLgl~~~a~~~~Ikkayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~~L~~   89 (91)
                      .++|+||||+++++.++||++||++++++|||+++++. +.+.|+.|++||++|++
T Consensus         3 ~~~y~iLgv~~~as~~~Ik~ayr~l~~~~HPD~~~~~~-~~~~f~~i~~Ay~~L~d   57 (77)
T 1hdj_A            3 KDYYQTLGLARGASDEEIKRAYRRQALRYHPDKNKEPG-AEEKFKEIAEAYDVLSD   57 (77)
T ss_dssp             CCSHHHHTCCTTCCHHHHHHHHHHHHHTTCTTTCCCTT-HHHHHHHHHHHHHHTTC
T ss_pred             CCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcc-HHHHHHHHHHHHHHHCC
Confidence            58999999999999999999999999999999998754 88999999999999987

>2ctr_A DNAJ homolog subfamily B member 9; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.83  E-value=1.2e-20  Score=112.55  Aligned_cols=58  Identities=40%  Similarity=0.676  Sum_probs=53.8

Q ss_pred             CCCCchhhhcCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHhcCC
Q 034568           32 KPKDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAYQGKRSL   90 (91)
Q Consensus        32 ~~~~~y~iLgl~~~a~~~~Ikkayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~~L~~~   90 (91)
                      ...++|+||||+++++.++||++||++++++|||+++.+ .+.+.|+.|++||++|++-
T Consensus         5 ~~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~-~a~~~f~~i~~Ay~~L~d~   62 (88)
T 2ctr_A            5 SSGSYYDILGVPKSASERQIKKAFHKLAMKYHPDKNKSP-DAEAKFREIAEAYETLSDA   62 (88)
T ss_dssp             CCCSHHHHHTCCTTCCHHHHHHHHHHHHHHTCTTTCCSH-HHHHHHHHHHHHHHHHHSS
T ss_pred             CCCCHHHHcCcCCCCCHHHHHHHHHHHHHHHCcCCCCCh-HHHHHHHHHHHHHHHHCCH
Confidence            467999999999999999999999999999999999864 4899999999999999873

>2ctp_A DNAJ homolog subfamily B member 12; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.83  E-value=9.8e-21  Score=110.52  Aligned_cols=57  Identities=42%  Similarity=0.690  Sum_probs=53.4

Q ss_pred             CCCCchhhhcCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHhcC
Q 034568           32 KPKDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAYQGKRS   89 (91)
Q Consensus        32 ~~~~~y~iLgl~~~a~~~~Ikkayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~~L~~   89 (91)
                      ...++|+||||+++++.++||++||++++++|||+++.+ .+.+.|+.|++||++|++
T Consensus         5 ~~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~-~~~~~f~~i~~Ay~~L~d   61 (78)
T 2ctp_A            5 SSGDYYEILGVSRGASDEDLKKAYRRLALKFHPDKNHAP-GATEAFKAIGTAYAVLSN   61 (78)
T ss_dssp             CSCCHHHHHTCCTTCCHHHHHHHHHHHHTTSCTTTCSSH-HHHHHHHHHHHHHHHHTS
T ss_pred             CCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCc-cHHHHHHHHHHHHHHHCC
Confidence            467999999999999999999999999999999999875 488999999999999987

>2cug_A Mkiaa0962 protein; DNAJ-like domain, structural genomics, molecular chaperone, NPPSFA; NMR {Mus musculus}

Probab=99.83  E-value=1.8e-20  Score=111.79  Aligned_cols=58  Identities=40%  Similarity=0.663  Sum_probs=53.7

Q ss_pred             cCCCCchhhhcCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHhcC
Q 034568           31 AKPKDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAYQGKRS   89 (91)
Q Consensus        31 ~~~~~~y~iLgl~~~a~~~~Ikkayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~~L~~   89 (91)
                      ....++|+||||+++++.++||++||++++++|||+++++. +.+.|+.|++||++|++
T Consensus        14 ~~~~d~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~-~~~~f~~i~~Ay~~L~d   71 (88)
T 2cug_A           14 ALDFDPYRVLGVSRTASQADIKKAYKKLAREWHPDKNKDPG-AEDRFIQISKAYEILSN   71 (88)
T ss_dssp             SSSSCHHHHHTCCTTCCHHHHHHHHHHHHHHSCTTTCCSTT-HHHHHHHHHHHHHHHHS
T ss_pred             cCCCCHHHHcCcCCCCCHHHHHHHHHHHHHHHCcCCCCChh-HHHHHHHHHHHHHHHCC
Confidence            34679999999999999999999999999999999998754 88999999999999986

>2ctw_A DNAJ homolog subfamily C member 5; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=99.82  E-value=2.4e-20  Score=115.36  Aligned_cols=59  Identities=37%  Similarity=0.620  Sum_probs=55.0

Q ss_pred             cCCCCchhhhcCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHhcC
Q 034568           31 AKPKDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAYQGKRS   89 (91)
Q Consensus        31 ~~~~~~y~iLgl~~~a~~~~Ikkayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~~L~~   89 (91)
                      ....++|+||||+++++.++||++||++++++|||++++.+.+.+.|+.|++||++|++
T Consensus        14 ~~~~~~Y~vLgv~~~as~~eIk~aYr~la~~~HPDk~~~~~~a~~~f~~i~~Ay~vL~d   72 (109)
T 2ctw_A           14 TSGESLYHVLGLDKNATSDDIKKSYRKLALKYHPDKNPDNPEAADKFKEINNAHAILTD   72 (109)
T ss_dssp             SCSCCHHHHHTCCTTCCHHHHHHHHHHHHHHSCTTTSTTCHHHHHHHHHHHHHHHHHTC
T ss_pred             CCCCCHHHHcCcCCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHHcC
Confidence            34679999999999999999999999999999999998766789999999999999987

>2ctq_A DNAJ homolog subfamily C member 12; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.82  E-value=1.4e-20  Score=116.79  Aligned_cols=59  Identities=29%  Similarity=0.437  Sum_probs=54.6

Q ss_pred             cCCCCchhhhcCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHhcC
Q 034568           31 AKPKDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAYQGKRS   89 (91)
Q Consensus        31 ~~~~~~y~iLgl~~~a~~~~Ikkayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~~L~~   89 (91)
                      ....++|+||||+++++.++||++||++++++|||++++.+.+.++|+.|++||++|+|
T Consensus        17 ~~~~d~Y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~vL~d   75 (112)
T 2ctq_A           17 EDTEDYYTLLGCDELSSVEQILAEFKVRALECHPDKHPENPKAVETFQKLQKAKEILTN   75 (112)
T ss_dssp             CCCCCHHHHTTCCTTSCHHHHHHHHHHHHHTTCTTTCTTCSTHHHHHHHHHHHHHHHHS
T ss_pred             cCCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHHCC
Confidence            35689999999999999999999999999999999998655689999999999999987

>2och_A Hypothetical protein DNJ-12; HSP40, J-domain, chaperone, APC90013.2, structural genomics, protein structure initiative; 1.86A {Caenorhabditis elegans} PDB: 2lo1_A

Probab=99.82  E-value=1.8e-20  Score=108.19  Aligned_cols=57  Identities=37%  Similarity=0.733  Sum_probs=51.6

Q ss_pred             hcCCCCchhhhcCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHhcC
Q 034568           30 LAKPKDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAYQGKRS   89 (91)
Q Consensus        30 ~~~~~~~y~iLgl~~~a~~~~Ikkayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~~L~~   89 (91)
                      +....++|+||||+++++.++||++||++++++|||++++.   .+.|+.|++||++|++
T Consensus         4 m~~~~~~y~iLgl~~~a~~~eIk~ayr~l~~~~HPD~~~~~---~~~f~~i~~Ay~~L~d   60 (73)
T 2och_A            4 MVKETGYYDVLGVKPDASDNELKKAYRKMALKFHPDKNPDG---AEQFKQISQAYEVLSD   60 (73)
T ss_dssp             --CCCCHHHHHTCCTTCCHHHHHHHHHHHHHHTCTTTCTTC---HHHHHHHHHHHHHHTS
T ss_pred             ccCCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCcCH---HHHHHHHHHHHHHHCC
Confidence            44678999999999999999999999999999999999873   5899999999999987

>2ej7_A HCG3 gene; HCG3 protein, DNAJ domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.82  E-value=2.3e-20  Score=109.82  Aligned_cols=59  Identities=41%  Similarity=0.742  Sum_probs=54.1

Q ss_pred             CCCCchhhhcCCCCCCHHHHHHHHHHHHHHhCCCCCCCc-hHHHHHHHHHHHHHHHhcCC
Q 034568           32 KPKDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDR-DCATSRFQEINEAYQGKRSL   90 (91)
Q Consensus        32 ~~~~~y~iLgl~~~a~~~~Ikkayr~l~~~~HPDk~~~~-~~a~~~f~~i~~Ay~~L~~~   90 (91)
                      ...++|+||||+++++.++||++||++++++|||+++.. +.+.+.|+.|++||++|++-
T Consensus         7 ~~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~~a~~~f~~i~~Ay~~L~d~   66 (82)
T 2ej7_A            7 GMVDYYEVLDVPRQASSEAIKKAYRKLALKWHPDKNPENKEEAERRFKQVAEAYEVLSDA   66 (82)
T ss_dssp             SSCCHHHHTTCCTTCCHHHHHHHHHHHHTTSCTTTCSTTHHHHHHHHHHHHHHHHHHSST
T ss_pred             CCcCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHHHCCH
Confidence            457999999999999999999999999999999999875 35889999999999999974

>1iur_A KIAA0730 protein; DNAJ like domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Homo sapiens} SCOP: a.2.3.1

Probab=99.82  E-value=8.7e-21  Score=113.64  Aligned_cols=57  Identities=28%  Similarity=0.473  Sum_probs=52.7

Q ss_pred             CCCchhhhcCCCCCCHHHHHHHHHHHHHHhCCCCCCCc-hHHHHHHHHHHHHHHHhcC
Q 034568           33 PKDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDR-DCATSRFQEINEAYQGKRS   89 (91)
Q Consensus        33 ~~~~y~iLgl~~~a~~~~Ikkayr~l~~~~HPDk~~~~-~~a~~~f~~i~~Ay~~L~~   89 (91)
                      ..++|+||||+++++.++||++||++++++|||++++. +.+.++|+.|++||++|++
T Consensus        15 ~~~~y~vLgv~~~as~~eIKkaYrkla~~~HPDk~~~~~~~a~~~F~~I~~AYevL~~   72 (88)
T 1iur_A           15 LKEVTSVVEQAWKLPESERKKIIRRLYLKWHPDKNPENHDIANEVFKHLQNEINRLEK   72 (88)
T ss_dssp             HHHHHHHHHHTTSSCSHHHHHHHHHHHHHTCTTTSSSCHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhCCCCCCCHHHHHHHHHHHHHHHCCCCCCCchHHHHHHHHHHHHHHHHHHh
Confidence            45899999999999999999999999999999999875 4589999999999999986

>1wjz_A 1700030A21RIK protein; J-domain, DNAJ like protein, structural genomics, riken structural genomics/proteomics initiative, RSGI, chaperone; NMR {Mus musculus} SCOP: a.2.3.1

Probab=99.81  E-value=1.7e-20  Score=112.82  Aligned_cols=60  Identities=32%  Similarity=0.537  Sum_probs=54.2

Q ss_pred             cCCCCchhhhcCCCCCCHHHHHHHHHHHHHHhCCCCCCCc------hHHHHHHHHHHHHHHHhcCC
Q 034568           31 AKPKDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDR------DCATSRFQEINEAYQGKRSL   90 (91)
Q Consensus        31 ~~~~~~y~iLgl~~~a~~~~Ikkayr~l~~~~HPDk~~~~------~~a~~~f~~i~~Ay~~L~~~   90 (91)
                      ....++|+||||+++++.++||++||++++++|||+++..      ..+.+.|++|++||++|+|-
T Consensus        13 ~~~~~~y~iLgv~~~as~~eIk~aYr~l~~~~HPDk~~~~~~~~~~~~~~~~f~~i~~Ay~~L~d~   78 (94)
T 1wjz_A           13 TLKKDWYSILGADPSANMSDLKQKYQKLILLYHPDKQSADVPAGTMEECMQKFIEIDQAWKILGNE   78 (94)
T ss_dssp             SSCSCHHHHTTCCTTCCHHHHHHHHHHTTSSSCSTTCCTTCCHHHHHHHHHHHHHHHHHHHHHSSS
T ss_pred             CCCCChHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCCChhhhHHHHHHHHHHHHHHHHHCCH
Confidence            3567999999999999999999999999999999998742      45889999999999999974

>2dmx_A DNAJ homolog subfamily B member 8; DNAJ J domain, helix-turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.81  E-value=4.4e-20  Score=110.83  Aligned_cols=58  Identities=38%  Similarity=0.730  Sum_probs=53.5

Q ss_pred             CCCCchhhhcCCCCCCHHHHHHHHHHHHHHhCCCCCCCc-hHHHHHHHHHHHHHHHhcC
Q 034568           32 KPKDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDR-DCATSRFQEINEAYQGKRS   89 (91)
Q Consensus        32 ~~~~~y~iLgl~~~a~~~~Ikkayr~l~~~~HPDk~~~~-~~a~~~f~~i~~Ay~~L~~   89 (91)
                      ...++|+||||+++++.++||++||++++++|||+++.. +.+.+.|+.|++||++|++
T Consensus         7 ~~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~~a~~~f~~i~~Ay~~L~d   65 (92)
T 2dmx_A            7 GMANYYEVLGVQASASPEDIKKAYRKLALRWHPDKNPDNKEEAEKKFKLVSEAYEVLSD   65 (92)
T ss_dssp             CCCCHHHHHTCCTTCCTTHHHHHHHHHHHHTCTTTCSSCSHHHHHHHHHHHHHHHHHHS
T ss_pred             CCcCHHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCCccHHHHHHHHHHHHHHHHHHCC
Confidence            456999999999999999999999999999999998764 4688999999999999986

>2qwo_B Putative tyrosine-protein phosphatase auxilin; chaperone-cochaperone complex, ATP-binding, nucleotide-bindi nucleus, phosphorylation, stress response; HET: ADP; 1.70A {Bos taurus} PDB: 2qwp_B* 2qwq_B* 2qwr_B* 2qwn_B* 1nz6_A

Probab=99.81  E-value=8e-21  Score=114.64  Aligned_cols=56  Identities=23%  Similarity=0.314  Sum_probs=51.7

Q ss_pred             CCchhhhcCCCCCCHHHHHHHHHHHHHHhCCCCCCCch---HHHHHHHHHHHHHHHhcC
Q 034568           34 KDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRD---CATSRFQEINEAYQGKRS   89 (91)
Q Consensus        34 ~~~y~iLgl~~~a~~~~Ikkayr~l~~~~HPDk~~~~~---~a~~~f~~i~~Ay~~L~~   89 (91)
                      .++|++|||++.++.++||+|||++++++|||++++.+   .|.++|+.|++||++|++
T Consensus        33 ~~~y~~Lgv~~~as~~eIKkAYRklal~~HPDK~~~~~~~~~A~~~F~~i~eAyevL~~   91 (92)
T 2qwo_B           33 ETKWKPVGMADLVTPEQVKKVYRKAVLVVHPCKATGQPYEQYAKMIFMELNDAWSEFEN   91 (92)
T ss_dssp             CCSCCCCCGGGSSSHHHHHHHHHHHHHHTCHHHHTTSTTHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccCCeecCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchhHhHHHHHHHHHHHHHHHHHh
Confidence            58999999999999999999999999999999987643   478999999999999985

>2lgw_A DNAJ homolog subfamily B member 2; J domain, HSJ1A, CO-chaperon, chaperone; NMR {Homo sapiens}

Probab=99.81  E-value=7.3e-20  Score=111.58  Aligned_cols=56  Identities=41%  Similarity=0.796  Sum_probs=52.2

Q ss_pred             CCchhhhcCCCCCCHHHHHHHHHHHHHHhCCCCCCCc-hHHHHHHHHHHHHHHHhcC
Q 034568           34 KDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDR-DCATSRFQEINEAYQGKRS   89 (91)
Q Consensus        34 ~~~y~iLgl~~~a~~~~Ikkayr~l~~~~HPDk~~~~-~~a~~~f~~i~~Ay~~L~~   89 (91)
                      .++|+||||+++++.++||++||++++++|||+++.. +.+.+.|+.|++||++|++
T Consensus         2 ~d~Y~iLgv~~~as~~eIk~aYr~la~~~HPDk~~~~~~~a~~~f~~I~~AY~vL~d   58 (99)
T 2lgw_A            2 ASYYEILDVPRSASADDIKKAYRRKALQWHPDKNPDNKEFAEKKFKEVAEAYEVLSD   58 (99)
T ss_dssp             CCHHHHSSSCTTSCHHHHHHHHHHHHHHTSTTTCCSCCHHHHHHHHHHHHHHHHHHS
T ss_pred             CCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCccHHHHHHHHHHHHHHHHHHCC
Confidence            4899999999999999999999999999999998875 4588999999999999987

>2o37_A Protein SIS1; HSP40, J-domain, cochaperone, APC90055.5, structural genomics, PSI-2, protein structure initiative; 1.25A {Saccharomyces cerevisiae}

Probab=99.80  E-value=6.7e-20  Score=110.18  Aligned_cols=57  Identities=37%  Similarity=0.648  Sum_probs=52.2

Q ss_pred             hcCCCCchhhhcCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHhcC
Q 034568           30 LAKPKDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAYQGKRS   89 (91)
Q Consensus        30 ~~~~~~~y~iLgl~~~a~~~~Ikkayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~~L~~   89 (91)
                      +....++|+||||+++++.++||++||++++++|||++++.   .++|++|++||++|++
T Consensus         4 m~~~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~---~~~f~~i~~Ay~~L~d   60 (92)
T 2o37_A            4 MVKETKLYDLLGVSPSANEQELKKGYRKAALKYHPDKPTGD---TEKFKEISEAFEILND   60 (92)
T ss_dssp             CCSCCHHHHHHTCCTTCCHHHHHHHHHHHHHHHCTTSTTCC---HHHHHHHHHHHHHHTS
T ss_pred             cccCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCh---HHHHHHHHHHHHHHCC
Confidence            34567999999999999999999999999999999999774   5799999999999987

>2qsa_A DNAJ homolog DNJ-2; J-domain, HSP40, APC90001.8, structural genomics, PSI-2, Pro structure initiative; 1.68A {Caenorhabditis elegans}

Probab=99.80  E-value=6e-20  Score=113.31  Aligned_cols=60  Identities=30%  Similarity=0.525  Sum_probs=54.9

Q ss_pred             hcCCCCchhhhcCCCCC-CHHHHHHHHHHHHHHhCCCCCCC---chHHHHHHHHHHHHHHHhcC
Q 034568           30 LAKPKDYYKILEVDYDA-TEEEIRSNYIRLALKWHPDKQKD---RDCATSRFQEINEAYQGKRS   89 (91)
Q Consensus        30 ~~~~~~~y~iLgl~~~a-~~~~Ikkayr~l~~~~HPDk~~~---~~~a~~~f~~i~~Ay~~L~~   89 (91)
                      .....++|+||||++++ +.++||++||++++++|||++++   .+.+.+.|++|++||++|++
T Consensus        11 ~~~~~~~y~iLgv~~~a~s~~eIk~aYr~l~~~~HPDk~~~~~~~~~a~~~f~~i~~AY~~L~d   74 (109)
T 2qsa_A           11 YCGLENCYDVLEVNREEFDKQKLAKAYRALARKHHPDRVKNKEEKLLAEERFRVIATAYETLKD   74 (109)
T ss_dssp             TTTTSCHHHHTTCCGGGCCHHHHHHHHHHHHHHTCGGGCCSHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred             HcCCCCHHHHcCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCccccHHHHHHHHHHHHHHHHHCC
Confidence            34578999999999999 99999999999999999999987   34589999999999999987

>1bq0_A DNAJ, HSP40; chaperone, heat shock, protein folding, DNAK; NMR {Escherichia coli} SCOP: a.2.3.1 PDB: 1xbl_A 1bqz_A

Probab=99.80  E-value=1.5e-20  Score=115.05  Aligned_cols=58  Identities=45%  Similarity=0.739  Sum_probs=53.5

Q ss_pred             CCCchhhhcCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHhcCC
Q 034568           33 PKDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAYQGKRSL   90 (91)
Q Consensus        33 ~~~~y~iLgl~~~a~~~~Ikkayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~~L~~~   90 (91)
                      ..++|+||||+++++.++||++||++++++|||++++.+.+.++|+.|++||++|++.
T Consensus         2 ~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~~L~d~   59 (103)
T 1bq0_A            2 KQDYYEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDS   59 (103)
T ss_dssp             CCCSTTTTSSCSSCCHHHHHHHHHHHHTTTCTTTCTTTCTHHHHHHHHTTTTTSTTCS
T ss_pred             CCCHHHHcCcCCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHHCCH
Confidence            4689999999999999999999999999999999986555889999999999999873

>1faf_A Large T antigen; J domain, HPD motif, anti-parallel hairpin of helices, viral protein; NMR {Murine polyomavirus} SCOP: a.2.3.1

Probab=99.79  E-value=5.2e-20  Score=108.14  Aligned_cols=52  Identities=19%  Similarity=0.342  Sum_probs=48.7

Q ss_pred             CCchhhhcCCCC--CCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHhcC
Q 034568           34 KDYYKILEVDYD--ATEEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAYQGKRS   89 (91)
Q Consensus        34 ~~~y~iLgl~~~--a~~~~Ikkayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~~L~~   89 (91)
                      .++|+||||+++  ++.++||++||++++++|||++++    .++|++|++||++|++
T Consensus        11 ~~~y~iLgl~~~~~a~~~eIk~aYr~la~~~HPDk~~~----~~~f~~i~~AYe~L~~   64 (79)
T 1faf_A           11 ERLLELLKLPRQLWGDFGRMQQAYKQQSLLLHPDKGGS----HALMQELNSLWGTFKT   64 (79)
T ss_dssp             HHHHHHHTCCSSSTTCHHHHHHHHHHHHHHSSGGGSCC----HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCC----HHHHHHHHHHHHHHhh
Confidence            579999999999  999999999999999999999875    5799999999999986

>3ag7_A Putative uncharacterized protein F9E10.5; J-domain, AN auxilin-like J-domain containing protein, JAC1, chloroplast accumulation response; 1.80A {Arabidopsis thaliana}

Probab=99.78  E-value=5.2e-20  Score=113.58  Aligned_cols=62  Identities=24%  Similarity=0.367  Sum_probs=53.6

Q ss_pred             hhcCCCCchhhhcCCCCCCHHHHHHHHHHHHHHhCCCCCCCc-------hHHHHHHHHHHHHHHHhcCCC
Q 034568           29 LLAKPKDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDR-------DCATSRFQEINEAYQGKRSLD   91 (91)
Q Consensus        29 ~~~~~~~~y~iLgl~~~a~~~~Ikkayr~l~~~~HPDk~~~~-------~~a~~~f~~i~~Ay~~L~~~~   91 (91)
                      .+....+||.|||++. ++.++||+|||++++++||||++++       ..|.++|+.|++||++|+|.+
T Consensus        36 ~l~~~~d~Y~vl~~~~-As~~eIKkAYRklal~~HPDK~~~~~~~~e~~~~A~~~F~~I~~AYevLsd~~  104 (106)
T 3ag7_A           36 ILWSGSGWKPVPLMDM-IEGNAVRKSYQRALLILHPDKLQQKGASANQKYMAEKVFELLQEAWDHFNTLG  104 (106)
T ss_dssp             TSCTTSCCCCCCGGGS-CSHHHHHHHHHHHHHHHCHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred             HhcccCCHHHHcCCCC-CCHHHHHHHHHHHHHHHCcCcCCCcccchhhHHHHHHHHHHHHHHHHHHcCcc
Confidence            4455689999999996 9999999999999999999997632       147899999999999999853

>2guz_A Mitochondrial import inner membrane translocase subunit TIM14; DNAJ-fold, chaperone, protein transport; HET: FLC; 2.00A {Saccharomyces cerevisiae}

Probab=99.78  E-value=1.9e-19  Score=103.75  Aligned_cols=54  Identities=24%  Similarity=0.247  Sum_probs=48.8

Q ss_pred             CCCchhhhcCCC-CCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHhcCC
Q 034568           33 PKDYYKILEVDY-DATEEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAYQGKRSL   90 (91)
Q Consensus        33 ~~~~y~iLgl~~-~a~~~~Ikkayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~~L~~~   90 (91)
                      ..++|+||||++ +++.++||++||++++++|||++++    .+.|++|++||++|++.
T Consensus        13 ~~~~y~iLgl~~~~a~~~eIk~ayr~l~~~~HPDk~g~----~~~f~~i~~Aye~L~~~   67 (71)
T 2guz_A           13 SKEALQILNLTENTLTKKKLKEVHRKIMLANHPDKGGS----PFLATKINEAKDFLEKR   67 (71)
T ss_dssp             HHHHHHHTTCCTTTCCHHHHHHHHHHHHHHHCGGGTCC----HHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHCCCCCCC----HHHHHHHHHHHHHHhhh
Confidence            358999999999 7999999999999999999999755    46999999999999863

>3apq_A DNAJ homolog subfamily C member 10; thioredoxin fold, DNAJ domain, endoplasmic reticulum, oxidor; 1.84A {Mus musculus}

Probab=99.77  E-value=4.2e-19  Score=118.51  Aligned_cols=56  Identities=38%  Similarity=0.644  Sum_probs=52.8

Q ss_pred             CCchhhhcCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHhcC
Q 034568           34 KDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAYQGKRS   89 (91)
Q Consensus        34 ~~~y~iLgl~~~a~~~~Ikkayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~~L~~   89 (91)
                      .|||+||||+++++.++||+|||++++++|||++++.+.+.++|+.|++||++|+|
T Consensus         2 ~~~y~~l~~~~~a~~~~ik~ay~~l~~~~HPD~~~~~~~~~~~f~~i~~Ay~~L~~   57 (210)
T 3apq_A            2 QNFYSLLGVSKTASSREIRQAFKKLALKLHPDKNPNNPNAHGDFLKINRAYEVLKD   57 (210)
T ss_dssp             CCHHHHHTCCTTCCHHHHHHHHHHHHHHHCGGGCTTCTTHHHHHHHHHHHHHHHTS
T ss_pred             CCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCChHHHHHHHHHHHHHHHhCC
Confidence            58999999999999999999999999999999997666689999999999999987

>2l6l_A DNAJ homolog subfamily C member 24; DPH4, Zn-CSL, J-domain, chaperone; NMR {Homo sapiens}

Probab=99.76  E-value=8.3e-19  Score=113.92  Aligned_cols=58  Identities=33%  Similarity=0.550  Sum_probs=53.0

Q ss_pred             CCCCchhhhcCCCCCCHHHHHHHHHHHHHHhCCCCCCCch------HHHHHHHHHHHHHHHhcC
Q 034568           32 KPKDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRD------CATSRFQEINEAYQGKRS   89 (91)
Q Consensus        32 ~~~~~y~iLgl~~~a~~~~Ikkayr~l~~~~HPDk~~~~~------~a~~~f~~i~~Ay~~L~~   89 (91)
                      ...|||+||||+++++.++||++||++++++|||++++..      .+.+.|..|++||++|+|
T Consensus         8 ~~~~~y~iLgv~~~a~~~eIk~aYr~l~~~~HPDk~~~~~~~~~~~~a~~~f~~i~~Ay~~L~d   71 (155)
T 2l6l_A            8 PKKDWYSILGADPSANISDLKQKYQKLILMYHPDKQSTDVPAGTVEECVQKFIEIDQAWKILGN   71 (155)
T ss_dssp             CCSHHHHHHTCCTTCCHHHHHHHHHHHHHHHSCCCCCCCCTTHHHHHHHHHHHHHHHHHHHSSS
T ss_pred             CCCChhHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCCchhHHHHHHHHHHHHHHHHHHcCC
Confidence            4579999999999999999999999999999999988752      367999999999999987

>3bvo_A CO-chaperone protein HSCB, mitochondrial precurso; structural genomics medical relev protein structure initiative, PSI-2; 3.00A {Homo sapiens}

Probab=99.75  E-value=2.6e-18  Score=116.59  Aligned_cols=61  Identities=18%  Similarity=0.363  Sum_probs=53.0

Q ss_pred             hhcCCCCchhhhcCCCC--CCHHHHHHHHHHHHHHhCCCCCCCch-----HHHHHHHHHHHHHHHhcC
Q 034568           29 LLAKPKDYYKILEVDYD--ATEEEIRSNYIRLALKWHPDKQKDRD-----CATSRFQEINEAYQGKRS   89 (91)
Q Consensus        29 ~~~~~~~~y~iLgl~~~--a~~~~Ikkayr~l~~~~HPDk~~~~~-----~a~~~f~~i~~Ay~~L~~   89 (91)
                      ......|||+||||+++  ++..+||++||++++++|||++++..     .+.++|..|++||++|+|
T Consensus        38 ~~~~~~d~y~lLgv~~~~~a~~~eIk~aYr~L~~~~HPDk~~~~~~~e~~~a~~~f~~In~AY~vLsd  105 (207)
T 3bvo_A           38 APDPTRDYFSLMDCNRSFRVDTAKLQHRYQQLQRLVHPDFFSQRSQTEKDFSEKHSTLVNDAYKTLLA  105 (207)
T ss_dssp             CCCTTCCHHHHTTSCSCSCCCHHHHHHHHHHHHHHHCGGGGTTSCHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred             CCCCCCCHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCCHHHHHHHHHHHHHHHHHHHHHCC
Confidence            33456799999999986  79999999999999999999987642     367899999999999986

>1n4c_A Auxilin; four helix bundle, protein binding; NMR {Bos taurus} SCOP: a.2.3.1 PDB: 1xi5_J

Probab=99.74  E-value=8.7e-19  Score=116.94  Aligned_cols=60  Identities=25%  Similarity=0.328  Sum_probs=53.8

Q ss_pred             hcCCCCchhhhcCCCCCCHHHHHHHHHHHHHHhCCCCCCCch---HHHHHHHHHHHHHHHhcC
Q 034568           30 LAKPKDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRD---CATSRFQEINEAYQGKRS   89 (91)
Q Consensus        30 ~~~~~~~y~iLgl~~~a~~~~Ikkayr~l~~~~HPDk~~~~~---~a~~~f~~i~~Ay~~L~~   89 (91)
                      +....++|+||||++.++.++||++||++++++|||++++..   .+.+.|+.|++||++|+|
T Consensus       113 l~~~~d~Y~vLgv~~~As~~eIKkAYRklal~~HPDK~~~~~~e~~A~~~F~~I~eAYevLsD  175 (182)
T 1n4c_A          113 LWAGETKWKPVGMADLVTPEQVKKVYRKAVLVVHPDKATGQPYEQYAKMIFMELNDAWSEFEN  175 (182)
T ss_dssp             SCTTCCCCCCCCGGGGSSHHHHHHHHHHHHHHTCGGGGSSCTTHHHHHHHHHHHHHHHHHHHH
T ss_pred             hcCccchhhcCCCCCCCCHHHHHHHHHHHHHHHCcCcCCCcchHHHHHHHHHHHHHHHHHHCC
Confidence            344479999999999999999999999999999999987653   278999999999999986

>1gh6_A Large T antigen; tumor suppressor, oncoprotein, antitumor protein; 3.20A {Simian virus 40} SCOP: a.2.3.1

Probab=99.73  E-value=3.2e-19  Score=111.30  Aligned_cols=53  Identities=21%  Similarity=0.434  Sum_probs=49.1

Q ss_pred             CCCchhhhcCCCCCCH--HHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHhcC
Q 034568           33 PKDYYKILEVDYDATE--EEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAYQGKRS   89 (91)
Q Consensus        33 ~~~~y~iLgl~~~a~~--~~Ikkayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~~L~~   89 (91)
                      ..++|+||||+++++.  ++||++||++++++|||++++    .++|++|++||++|++
T Consensus         7 ~~~~Y~iLgv~~~as~~~~eIk~aYr~la~~~HPDk~~~----~e~f~~I~~AYevL~d   61 (114)
T 1gh6_A            7 SLQLMDLLGLERSAWGNIPLMRKAYLKKCKEFHPDKGGD----EEKMKKMNTLYKKMED   61 (114)
T ss_dssp             HHHHHHHTTCCTTSCSCHHHHHHHHHHTTTTCCTTTCCT----TTTTHHHHHHHHHHHH
T ss_pred             hhhHHHHcCCCCCCCcCHHHHHHHHHHHHHHHCCCCCcc----HHHHHHHHHHHHHHCC
Confidence            3589999999999998  999999999999999999876    4799999999999985

>1fpo_A HSC20, chaperone protein HSCB; molecular chaperone; 1.80A {Escherichia coli} SCOP: a.2.3.1 a.23.1.1

Probab=99.72  E-value=5.2e-18  Score=112.16  Aligned_cols=55  Identities=24%  Similarity=0.429  Sum_probs=50.4

Q ss_pred             CchhhhcCCCCC--CHHHHHHHHHHHHHHhCCCCCCCch-----HHHHHHHHHHHHHHHhcC
Q 034568           35 DYYKILEVDYDA--TEEEIRSNYIRLALKWHPDKQKDRD-----CATSRFQEINEAYQGKRS   89 (91)
Q Consensus        35 ~~y~iLgl~~~a--~~~~Ikkayr~l~~~~HPDk~~~~~-----~a~~~f~~i~~Ay~~L~~   89 (91)
                      |||+||||++++  +..+||++||++++++|||++++..     .+.+.|..|++||++|+|
T Consensus         2 d~y~lLgl~~~a~i~~~eIk~aYr~L~~~~HPDk~~~~~~~e~~~a~~~f~~In~AY~vL~d   63 (171)
T 1fpo_A            2 DYFTLFGLPARYQLDTQALSLRFQDLQRQYHPDKFASGSQAEQLAAVQQSATINQAWQTLRH   63 (171)
T ss_dssp             HHHHHTTCCSSSCCCHHHHHHHHHHHHHHTCGGGGTTSCHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred             CHHHHCCCCCCCCCCHHHHHHHHHHHHHHhCcCCCCCCCHHHHHHHHHHHHHHHHHHHHHcC
Confidence            799999999998  9999999999999999999988752     356899999999999986

>3lz8_A Putative chaperone DNAJ; structure genomics, structural genomics, PSI-2, protein STRU initiative; 2.90A {Klebsiella pneumoniae subsp} PDB: 2kqx_A

Probab=99.70  E-value=7.9e-19  Score=126.01  Aligned_cols=61  Identities=34%  Similarity=0.544  Sum_probs=0.0

Q ss_pred             hhcCCCCchhhhcCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHhcCC
Q 034568           29 LLAKPKDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAYQGKRSL   90 (91)
Q Consensus        29 ~~~~~~~~y~iLgl~~~a~~~~Ikkayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~~L~~~   90 (91)
                      ......|||+||||+++|+.++||+|||++++++|||+++++ .+.++|++|++||++|+|-
T Consensus        23 ~~m~~~d~Y~vLgv~~~as~~eIk~aYr~la~~~HPDk~~~~-~a~~~f~~i~~Ay~vL~d~   83 (329)
T 3lz8_A           23 NAMELKDYYAILGVQPTDDLKTIKTAYRRLARKYHPDVSKEN-DAEAKFKDLAEAWEVLKDE   83 (329)
T ss_dssp             --------------------------------------------------------------
T ss_pred             ccccccCHHHHcCcCCCCCHHHHHHHHHHHHHHHCCCCCCCh-HHHHHHHHHHHHHHHhhhh
Confidence            334567999999999999999999999999999999999875 5899999999999999974

>2pf4_E Small T antigen; PP2A, SV40, DNAJ, aalpha subunit, hydrolase regulat protein complex; 3.10A {Simian virus 40} PDB: 2pkg_C

Probab=99.66  E-value=8.6e-18  Score=111.47  Aligned_cols=53  Identities=21%  Similarity=0.422  Sum_probs=46.1

Q ss_pred             CCCchhhhcCCCCCC--HHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHhcC
Q 034568           33 PKDYYKILEVDYDAT--EEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAYQGKRS   89 (91)
Q Consensus        33 ~~~~y~iLgl~~~a~--~~~Ikkayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~~L~~   89 (91)
                      ..++|+||||+++++  .++||+|||++++++|||++++    .++|++|++||++|+|
T Consensus        10 ~~d~Y~vLGl~~~as~~~~eIKkAYRkLa~~~HPDk~~~----~e~F~~I~~AYevLsd   64 (174)
T 2pf4_E           10 SLQLMDLLGLERSAWGNIPLMRKAYLKKCKEFHPDKGGD----EEKMKKMNTLYKKMED   64 (174)
T ss_dssp             HHHHHHTTTCCGGGTTCHHHHHHHHHHHGGGCSCC---C----CTTTTHHHHHHHHHHH
T ss_pred             cccHHHHcCCCCCCCcCHHHHHHHHHHHHHHHCcCCCCC----HHHHHHHHHHHHHhCC
Confidence            358999999999998  6999999999999999999876    3799999999999986

>3uo3_A J-type CO-chaperone JAC1, mitochondrial; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, J-protein; 1.85A {Saccharomyces cerevisiae} PDB: 3uo2_A

Probab=99.62  E-value=1.3e-16  Score=106.38  Aligned_cols=56  Identities=18%  Similarity=0.458  Sum_probs=50.4

Q ss_pred             cCCCCchhhh------cCCC-CCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHhcC
Q 034568           31 AKPKDYYKIL------EVDY-DATEEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAYQGKRS   89 (91)
Q Consensus        31 ~~~~~~y~iL------gl~~-~a~~~~Ikkayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~~L~~   89 (91)
                      ....|||+||      |+++ +++..+||++||++++++|||++++   +.+.|..|++||++|+|
T Consensus         8 ~~~~d~y~ll~~~~p~~~~~~~a~~~eIk~aYr~la~~~HPDk~~~---a~~~f~~i~~AY~vL~d   70 (181)
T 3uo3_A            8 RFTSTFYELFPKTFPKKLPIWTIDQSRLRKEYRQLQAQHHPDMAQQ---GSEQSSTLNQAYHTLKD   70 (181)
T ss_dssp             CCSCCTGGGCTTTCTTCSCCSCCCHHHHHHHHHHHHHTCCTTSCCS---CSSGGGSHHHHHHHHHS
T ss_pred             CCCCCHHHHhccccccCCCCCCCCHHHHHHHHHHHHHHhCcCCCcc---HHHHHHHHHHHHHHHcC
Confidence            3467999999      5765 8999999999999999999999987   57899999999999987

>3apo_A DNAJ homolog subfamily C member 10; PDI family, thioredoxin, endoplasmic reticulum, oxidoreducta; 2.40A {Mus musculus}

Probab=99.59  E-value=1.5e-16  Score=122.57  Aligned_cols=60  Identities=35%  Similarity=0.573  Sum_probs=30.5

Q ss_pred             hcCCCCchhhhcCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHhcC
Q 034568           30 LAKPKDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAYQGKRS   89 (91)
Q Consensus        30 ~~~~~~~y~iLgl~~~a~~~~Ikkayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~~L~~   89 (91)
                      .....|||+||||+++|+.++||+|||++++++|||++++.+.+.++|++|++||++|+|
T Consensus        17 ~~~~~~~y~~lg~~~~a~~~~i~~ay~~l~~~~hpd~~~~~~~~~~~f~~i~~ay~~L~~   76 (780)
T 3apo_A           17 GRHDQNFYSLLGVSKTASSREIRQAFKKLALKLHPDKNPNNPNAHGDFLKINRAYEVLKD   76 (780)
T ss_dssp             ------CHHHHTCCTTCCHHHHHHHHCC-----------------------CTHHHHHHS
T ss_pred             CCCCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCChHHHHHHHHHHHHHHHHcC
Confidence            345679999999999999999999999999999999997666689999999999999987

>2guz_B Mitochondrial import inner membrane translocase subunit TIM16; DNAJ-fold, chaperone, protein transport; HET: FLC; 2.00A {Saccharomyces cerevisiae}

Probab=99.37  E-value=7.5e-13  Score=74.99  Aligned_cols=51  Identities=14%  Similarity=0.110  Sum_probs=45.1

Q ss_pred             CCchhhhcCCCC---CCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHhc
Q 034568           34 KDYYKILEVDYD---ATEEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAYQGKR   88 (91)
Q Consensus        34 ~~~y~iLgl~~~---a~~~~Ikkayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~~L~   88 (91)
                      ...|.||||++.   ++.++|+++||+|....|||+++++    .....|++|+++|.
T Consensus         4 ~EA~~ILgv~~~~~~a~~~~Ik~~yr~Lm~~nhPDkGGS~----yl~~ki~~Ake~l~   57 (65)
T 2guz_B            4 DESCKILNIEESKGDLNMDKINNRFNYLFEVNDKEKGGSF----YLQSKVYRAAERLK   57 (65)
T ss_dssp             HHHHHHTTCCGGGTCCSHHHHHHHHHHHHHHTCGGGTCCH----HHHHHHHHHHHHHH
T ss_pred             HHHHHHhCCCCCcCcCCHHHHHHHHHHHHHHhCCCCCCCH----HHHHHHHHHHHHHH
Confidence            357899999999   9999999999999999999998774    56778999999885

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A

Probab=98.95  E-value=8.2e-10  Score=77.69  Aligned_cols=59  Identities=37%  Similarity=0.637  Sum_probs=53.4

Q ss_pred             CCCCchhhhcCCCCCCHHHHHHHHHHHHHHhCCCCCCCc---hHHHHHHHHHHHHHHHhcCC
Q 034568           32 KPKDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDR---DCATSRFQEINEAYQGKRSL   90 (91)
Q Consensus        32 ~~~~~y~iLgl~~~a~~~~Ikkayr~l~~~~HPDk~~~~---~~a~~~f~~i~~Ay~~L~~~   90 (91)
                      ...++|.+||+...++.++|+++|+++++++|||+.+.+   ..+.+.|+.|.+||++|+|.
T Consensus       380 ~~~~~y~~lg~~~~~~~~~~~~~y~~~~l~~~pd~~~~~~~~~~a~~~~~~i~~ay~~L~d~  441 (450)
T 2y4t_A          380 QKRDYYKILGVKRNAKKQEIIKAYRKLALQWHPDNFQNEEEKKKAEKKFIDIAAAKEVLSDP  441 (450)
T ss_dssp             HSCCSGGGSCSSTTCCTTHHHHHHHHHHHHSCGGGCCSHHHHHHHHHHHHHHHHHHHHSSGG
T ss_pred             cchhHHHHhCCCccCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHHHHhCCH
Confidence            345899999999999999999999999999999998875   35889999999999999874

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=94.75  E-value=0.033  Score=42.33  Aligned_cols=50  Identities=14%  Similarity=0.123  Sum_probs=38.6

Q ss_pred             hhcCCCCchhhhcCCCCCCH--HHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHH
Q 034568           29 LLAKPKDYYKILEVDYDATE--EEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAYQG   86 (91)
Q Consensus        29 ~~~~~~~~y~iLgl~~~a~~--~~Ikkayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~~   86 (91)
                      ......++|.+||++-+...  .+|+++||++++..+++        .+++..|..|+.+
T Consensus       624 ~~~~~~~~~~~lG~~~~~~~lr~~~~~ayr~la~~~~~~--------~~r~~lvd~a~~v  675 (681)
T 2pzi_A          624 LKDNKASTNHILGFPFTSHGLRLGVEASLRSLARVAPTQ--------RHRYTLVDMANKV  675 (681)
T ss_dssp             HTSCCCSSSEETTEESSHHHHHHHHHHHHHHHHHHCSSH--------HHHHHHHHHHHHH
T ss_pred             HHccCCCCcccCCCCCChHHHHHHHHHHHHHHHHhCCCh--------HHHHHHHHHhccc
Confidence            33556779999999776655  77999999999966553        4688888888765

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	91
d1xbla_	75	a.2.3.1 (A:) DnaJ chaperone, N-terminal (J) domain	4e-11
d1hdja_	77	a.2.3.1 (A:) HSP40 {Human (Homo sapiens) [TaxId: 9	1e-10
d1wjza_	94	a.2.3.1 (A:) CSL-type zinc finger-containing prote	4e-10
d1iura_	88	a.2.3.1 (A:) Hypothetical protein KIAA0730 {Human	9e-10
d1nz6a_	98	a.2.3.1 (A:) Auxilin J-domain {Cow (Bos taurus) [T	1e-08
d1fafa_	79	a.2.3.1 (A:) Large T antigen, the N-terminal J dom	9e-08
d1fpoa1	76	a.2.3.1 (A:1-76) HSC20 (HSCB), N-terminal (J) doma	5e-07

>d1xbla_ a.2.3.1 (A:) DnaJ chaperone, N-terminal (J) domain {Escherichia coli [TaxId: 562]} Length = 75

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: DnaJ chaperone, N-terminal (J) domain
species: Escherichia coli [TaxId: 562]

 Score = 51.6 bits (123), Expect = 4e-11
 Identities = 26/52 (50%), Positives = 36/52 (69%)

Query: 34 KDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAYQ 85
          +DYY+IL V   A E EIR  Y RLA+K+HPD+ +    A ++F+EI EAY+
Sbjct: 3  QDYYEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYE 54

>d1hdja_ a.2.3.1 (A:) HSP40 {Human (Homo sapiens) [TaxId: 9606]} Length = 77

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: HSP40
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.1 bits (119), Expect = 1e-10
 Identities = 25/52 (48%), Positives = 35/52 (67%), Gaps = 1/52 (1%)

Query: 34 KDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAYQ 85
          KDYY+ L +   A++EEI+  Y R AL++HPDK K+   A  +F+EI EAY 
Sbjct: 3  KDYYQTLGLARGASDEEIKRAYRRQALRYHPDKNKE-PGAEEKFKEIAEAYD 53

>d1wjza_ a.2.3.1 (A:) CSL-type zinc finger-containing protein 3 (J-domain protein DjC7, 1700030a21RIK) {Mouse (Mus musculus) [TaxId: 10090]} Length = 94

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: CSL-type zinc finger-containing protein 3 (J-domain protein DjC7, 1700030a21RIK)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 49.7 bits (118), Expect = 4e-10
 Identities = 20/58 (34%), Positives = 31/58 (53%), Gaps = 6/58 (10%)

Query: 34 KDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRDCATSR------FQEINEAYQ 85
          KD+Y IL  D  A   +++  Y +L L +HPDKQ     A +       F EI++A++
Sbjct: 16 KDWYSILGADPSANMSDLKQKYQKLILLYHPDKQSADVPAGTMEECMQKFIEIDQAWK 73

>d1iura_ a.2.3.1 (A:) Hypothetical protein KIAA0730 {Human (Homo sapiens) [TaxId: 9606]} Length = 88

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: Hypothetical protein KIAA0730
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.5 bits (115), Expect = 9e-10
 Identities = 16/53 (30%), Positives = 25/53 (47%), Gaps = 1/53 (1%)

Query: 34 KDYYKILEVDYDATEEEIRSNYIRLALKWHPDK-QKDRDCATSRFQEINEAYQ 85
          K+   ++E  +   E E +    RL LKWHPDK  ++ D A   F+ +     
Sbjct: 16 KEVTSVVEQAWKLPESERKKIIRRLYLKWHPDKNPENHDIANEVFKHLQNEIN 68

>d1nz6a_ a.2.3.1 (A:) Auxilin J-domain {Cow (Bos taurus) [TaxId: 9913]} Length = 98

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: Auxilin J-domain
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 45.7 bits (108), Expect = 1e-08
 Identities = 15/60 (25%), Positives = 27/60 (45%), Gaps = 3/60 (5%)

Query: 29 LLAKPKDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKD---RDCATSRFQEINEAYQ 85
          +L   +  +K + +    T E+++  Y +  L  HPDK         A   F E+N+A+ 
Sbjct: 28 VLWAGETKWKPVGMADLVTPEQVKKVYRKAVLVVHPDKATGQPYEQYAKMIFMELNDAWS 87

>d1fafa_ a.2.3.1 (A:) Large T antigen, the N-terminal J domain {Murine polyomavirus [TaxId: 10634]} Length = 79

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: Large T antigen, the N-terminal J domain
species: Murine polyomavirus [TaxId: 10634]

 Score = 43.1 bits (101), Expect = 9e-08
 Identities = 11/57 (19%), Positives = 22/57 (38%), Gaps = 6/57 (10%)

Query: 31 AKPKDYYKILEVDYDA--TEEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAYQ 85
          A  +   ++L++          ++  Y + +L  HPDK           QE+N  + 
Sbjct: 8  ADKERLLELLKLPRQLWGDFGRMQQAYKQQSLLLHPDKGGSHAL----MQELNSLWG 60

>d1fpoa1 a.2.3.1 (A:1-76) HSC20 (HSCB), N-terminal (J) domain {Escherichia coli [TaxId: 562]} Length = 76

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: HSC20 (HSCB), N-terminal (J) domain
species: Escherichia coli [TaxId: 562]

 Score = 41.2 bits (96), Expect = 5e-07
 Identities = 13/58 (22%), Positives = 26/58 (44%), Gaps = 7/58 (12%)

Query: 35 DYYKILEV--DYDATEEEIRSNYIRLALKWHPDKQK-----DRDCATSRFQEINEAYQ 85
          DY+ +  +   Y    + +   +  L  ++HPDK       ++  A  +   IN+A+Q
Sbjct: 2  DYFTLFGLPARYQLDTQALSLRFQDLQRQYHPDKFASGSQAEQLAAVQQSATINQAWQ 59

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	91
d1xbla_	75	DnaJ chaperone, N-terminal (J) domain {Escherichia	99.88
d1hdja_	77	HSP40 {Human (Homo sapiens) [TaxId: 9606]}	99.82
d1wjza_	94	CSL-type zinc finger-containing protein 3 (J-domai	99.82
d1gh6a_	114	Large T antigen, the N-terminal J domain {Simian v	99.81
d1fafa_	79	Large T antigen, the N-terminal J domain {Murine p	99.79
d1iura_	88	Hypothetical protein KIAA0730 {Human (Homo sapiens	99.78
d1fpoa1	76	HSC20 (HSCB), N-terminal (J) domain {Escherichia c	99.74
d1nz6a_	98	Auxilin J-domain {Cow (Bos taurus) [TaxId: 9913]}	99.73

>d1xbla_ a.2.3.1 (A:) DnaJ chaperone, N-terminal (J) domain {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: DnaJ chaperone, N-terminal (J) domain
species: Escherichia coli [TaxId: 562]

Probab=99.88  E-value=6.2e-23  Score=118.29  Aligned_cols=58  Identities=45%  Similarity=0.739  Sum_probs=54.5

Q ss_pred             CCCchhhhcCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHhcCC
Q 034568           33 PKDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAYQGKRSL   90 (91)
Q Consensus        33 ~~~~y~iLgl~~~a~~~~Ikkayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~~L~~~   90 (91)
                      .+|||+||||++++|.++||+|||++++++|||++++.+.+.+.|..|++||++|+|-
T Consensus         2 k~dyY~vLgv~~~As~~eIk~aYr~l~~~~HPDk~~~~~~~~~~f~~i~~Ay~vL~d~   59 (75)
T d1xbla_           2 KQDYYEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDS   59 (75)
T ss_dssp             CCCTTTTTCCSSSCCHHHHHHHHHHHHHHTCCTTCTTTCHHHHHHHHHHHHHHHTTSS
T ss_pred             CCCHHHHcCCCCCcCHHHHHHHHHHHHhhhhhhccCCChHHHHHHHHHHHHHHhcCCH
Confidence            5799999999999999999999999999999999988767889999999999999974

>d1hdja_ a.2.3.1 (A:) HSP40 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: HSP40
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.82  E-value=1.3e-20  Score=108.79  Aligned_cols=55  Identities=45%  Similarity=0.770  Sum_probs=52.2

Q ss_pred             CCchhhhcCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHhcC
Q 034568           34 KDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAYQGKRS   89 (91)
Q Consensus        34 ~~~y~iLgl~~~a~~~~Ikkayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~~L~~   89 (91)
                      +|||+||||+++++.++|++||+++++++|||++..+. +.+.|..|++||++|+|
T Consensus         3 kdyY~iLgv~~~as~~eIk~ay~~l~~~~hPD~~~~~~-~~~~~~~i~~Ay~vLsd   57 (77)
T d1hdja_           3 KDYYQTLGLARGASDEEIKRAYRRQALRYHPDKNKEPG-AEEKFKEIAEAYDVLSD   57 (77)
T ss_dssp             CCSHHHHTCCTTCCHHHHHHHHHHHHHTTCTTTCCCTT-HHHHHHHHHHHHHHTTC
T ss_pred             CChHHHcCCCCCcCHHHHHHHHHHHHHHhccccccchh-HHHHHHHHHHHHHHhcC
Confidence            59999999999999999999999999999999998865 78999999999999997

>d1wjza_ a.2.3.1 (A:) CSL-type zinc finger-containing protein 3 (J-domain protein DjC7, 1700030a21RIK) {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: CSL-type zinc finger-containing protein 3 (J-domain protein DjC7, 1700030a21RIK)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.82  E-value=6e-21  Score=114.10  Aligned_cols=59  Identities=32%  Similarity=0.543  Sum_probs=53.4

Q ss_pred             CCCCchhhhcCCCCCCHHHHHHHHHHHHHHhCCCCCCCc------hHHHHHHHHHHHHHHHhcCC
Q 034568           32 KPKDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDR------DCATSRFQEINEAYQGKRSL   90 (91)
Q Consensus        32 ~~~~~y~iLgl~~~a~~~~Ikkayr~l~~~~HPDk~~~~------~~a~~~f~~i~~Ay~~L~~~   90 (91)
                      ...|||+||||+++++.++||++|+++++++|||++...      ..+.+.|+.|++||++|+|-
T Consensus        14 ~~~d~Y~iLgv~~~as~~eIk~aY~~l~~~~HPDk~~~~~~~~~~~~a~~~f~~I~~Ay~vL~d~   78 (94)
T d1wjza_          14 LKKDWYSILGADPSANMSDLKQKYQKLILLYHPDKQSADVPAGTMEECMQKFIEIDQAWKILGNE   78 (94)
T ss_dssp             SCSCHHHHTTCCTTCCHHHHHHHHHHTTSSSCSTTCCTTCCHHHHHHHHHHHHHHHHHHHHHSSS
T ss_pred             hccChHHHcCCCCCcCHHHHHHHHHHHHHHhhhhhccccchHHHHHHHHHHHHHHHHHHHHhCCH
Confidence            357999999999999999999999999999999998764      34788999999999999974

>d1gh6a_ a.2.3.1 (A:) Large T antigen, the N-terminal J domain {Simian virus 40, Sv40 [TaxId: 10633]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: Large T antigen, the N-terminal J domain
species: Simian virus 40, Sv40 [TaxId: 10633]

Probab=99.81  E-value=1.7e-21  Score=119.96  Aligned_cols=53  Identities=21%  Similarity=0.450  Sum_probs=48.6

Q ss_pred             CCCchhhhcCCCCC--CHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHhcC
Q 034568           33 PKDYYKILEVDYDA--TEEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAYQGKRS   89 (91)
Q Consensus        33 ~~~~y~iLgl~~~a--~~~~Ikkayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~~L~~   89 (91)
                      ..++|+||||+++|  +.++||+|||+|++++|||+++++    ++|++|++||++|++
T Consensus         7 ~~~ly~iLGv~~~a~~~~~~IKkAYrkla~k~HPDk~~~~----e~F~~I~~AY~vLsd   61 (114)
T d1gh6a_           7 SLQLMDLLGLERSAWGNIPLMRKAYLKKCKEFHPDKGGDE----EKMKKMNTLYKKMED   61 (114)
T ss_dssp             HHHHHHHTTCCTTSCSCHHHHHHHHHHTTTTCCTTTCCTT----TTTHHHHHHHHHHHH
T ss_pred             HHHHHHHcCCCCCCCCCHHHHHHHHHHHHHHhcccchhhH----HHHHHHHHHHHHhCC
Confidence            45899999999998  788999999999999999999863    689999999999985

>d1fafa_ a.2.3.1 (A:) Large T antigen, the N-terminal J domain {Murine polyomavirus [TaxId: 10634]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: Large T antigen, the N-terminal J domain
species: Murine polyomavirus [TaxId: 10634]

Probab=99.79  E-value=3.3e-20  Score=107.75  Aligned_cols=53  Identities=19%  Similarity=0.322  Sum_probs=48.5

Q ss_pred             CCCchhhhcCCCCC--CHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHhcC
Q 034568           33 PKDYYKILEVDYDA--TEEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAYQGKRS   89 (91)
Q Consensus        33 ~~~~y~iLgl~~~a--~~~~Ikkayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~~L~~   89 (91)
                      ..++|+||||++++  +.++||+|||++++++|||++++    .++|++|++||++|++
T Consensus        10 ~~~~y~iLgl~~~~~~~~~~IkkaYr~l~~~~HPDk~g~----~e~~~~in~Ay~~L~d   64 (79)
T d1fafa_          10 KERLLELLKLPRQLWGDFGRMQQAYKQQSLLLHPDKGGS----HALMQELNSLWGTFKT   64 (79)
T ss_dssp             HHHHHHHHTCCSSSTTCHHHHHHHHHHHHHHSSGGGSCC----HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhCCCCCCCCCHHHHHHHHHHHHHHhCcccCCC----HHHHHHHHHHHHHHCC
Confidence            45799999999987  99999999999999999999876    4789999999999986

>d1iura_ a.2.3.1 (A:) Hypothetical protein KIAA0730 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: Hypothetical protein KIAA0730
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.78  E-value=5.5e-20  Score=108.73  Aligned_cols=56  Identities=29%  Similarity=0.495  Sum_probs=52.0

Q ss_pred             CCchhhhcCCCCCCHHHHHHHHHHHHHHhCCCCCCCc-hHHHHHHHHHHHHHHHhcC
Q 034568           34 KDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDR-DCATSRFQEINEAYQGKRS   89 (91)
Q Consensus        34 ~~~y~iLgl~~~a~~~~Ikkayr~l~~~~HPDk~~~~-~~a~~~f~~i~~Ay~~L~~   89 (91)
                      .++|+||||+.+++.++||+|||++++++|||++++. +.+.++|+.|++||++|++
T Consensus        16 ~~~y~iL~v~~~as~~eIKkAYrrl~~~~HPDk~~~~~~~a~~~f~~i~~Ay~~L~~   72 (88)
T d1iura_          16 KEVTSVVEQAWKLPESERKKIIRRLYLKWHPDKNPENHDIANEVFKHLQNEINRLEK   72 (88)
T ss_dssp             HHHHHHHHHTTSSCSHHHHHHHHHHHHHTCTTTSSSCHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhCCCCCCCHHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHH
Confidence            5899999999999999999999999999999998775 4589999999999999974

>d1fpoa1 a.2.3.1 (A:1-76) HSC20 (HSCB), N-terminal (J) domain {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: HSC20 (HSCB), N-terminal (J) domain
species: Escherichia coli [TaxId: 562]

Probab=99.74  E-value=1.1e-18  Score=100.24  Aligned_cols=55  Identities=24%  Similarity=0.408  Sum_probs=48.6

Q ss_pred             CchhhhcCCCC--CCHHHHHHHHHHHHHHhCCCCCCCc-----hHHHHHHHHHHHHHHHhcC
Q 034568           35 DYYKILEVDYD--ATEEEIRSNYIRLALKWHPDKQKDR-----DCATSRFQEINEAYQGKRS   89 (91)
Q Consensus        35 ~~y~iLgl~~~--a~~~~Ikkayr~l~~~~HPDk~~~~-----~~a~~~f~~i~~Ay~~L~~   89 (91)
                      |||++|||+++  ++.++||++||++++.+|||+..+.     ..+.+.|..|++||++|+|
T Consensus         2 nyy~lLgl~~~~~~d~~eIk~aYr~l~~~~HPDk~~~~~~~~~~~a~~~~~~i~~Ay~vL~d   63 (76)
T d1fpoa1           2 DYFTLFGLPARYQLDTQALSLRFQDLQRQYHPDKFASGSQAEQLAAVQQSATINQAWQTLRH   63 (76)
T ss_dssp             HHHHHTTCCSSSCCCHHHHHHHHHHHHHHTCGGGGTTSCHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred             ChHHHCCCCCCCCCCHHHHHHHHHHHHHHhCccccccchHHHHHHHHHHHHHHHHHHHHhCC
Confidence            79999999985  5699999999999999999997653     2367889999999999987

>d1nz6a_ a.2.3.1 (A:) Auxilin J-domain {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: Auxilin J-domain
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.73  E-value=9.9e-19  Score=105.06  Aligned_cols=63  Identities=24%  Similarity=0.330  Sum_probs=55.5

Q ss_pred             hhhcCCCCchhhhcCCCCCCHHHHHHHHHHHHHHhCCCCCCCc---hHHHHHHHHHHHHHHHhcCC
Q 034568           28 SLLAKPKDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDR---DCATSRFQEINEAYQGKRSL   90 (91)
Q Consensus        28 ~~~~~~~~~y~iLgl~~~a~~~~Ikkayr~l~~~~HPDk~~~~---~~a~~~f~~i~~Ay~~L~~~   90 (91)
                      ..++...+.|++|||++.++.++||++||++++.+|||+++++   ..+.+.|+.|++||++|+|-
T Consensus        27 ~vl~~~~~~y~~Lgl~~~~t~~eIk~aYr~l~~~~HPDk~~~~~~~~~a~~~f~~I~~Ay~~L~d~   92 (98)
T d1nz6a_          27 TVLWAGETKWKPVGMADLVTPEQVKKVYRKAVLVVHPDKATGQPYEQYAKMIFMELNDAWSEFENQ   92 (98)
T ss_dssp             GTSCTTCCSCCCCCGGGCCSHHHHHHHHHHHHHHSCHHHHTTSTTHHHHHHHHHHHHHHHHHHHTT
T ss_pred             hhcCCcccCCeecCCCccCCHHHHHHHHHHHHHHhccccCCChHHHHHHHHHHHHHHHHHHHHCCH
Confidence            3445566889999999999999999999999999999997765   34788999999999999985