Citrus Sinensis ID: 034578

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90
Protein Sequence
MACTTKITMKAFVSHYKVDGFNNIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDLQHVIATAPTHEGVSHVGGDMFDAIPNADAVFMKVA
Secondary Structure (PSIPRED)
ccccHHHHHHHHHHHccccccccccEEEEEcccHHHHHHHHHHHccccEEEEEEcHHHHHcccccccEEEEEcccccccccccEEEEEcc
Secondary Structure Prediction (SSPRO)
cccccHHHHHHHHHHHccccccccccEEEEcccccHHHHccHHHcccccEEEEEcHHHHHccccEccEEEEEccccccccccccEEccEc
Coil and Loop (DISEMBL)
MACTTKITMKAFVSHYkvdgfnniRSMVDVGGGTGTVLAEIVKsyphikginfdLQHViatapthegvshvggdmfdaipNADAVFMKVA
Flexible Loop (DISEMBL)
macttkitmKAFVSHYKVDGFNNIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDLQHVIATAPTHEGVSHVGGDMFDAIPNADAVFMKVA
Low Complexity Region (SEG)
MACTTKITMKAFVSHYKVDGFNNIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDLQHVIATAPTHEGVSHVGGDMFDAIPNADAVFMKVA
Disordered region (IsUnstruct)
***TTKITMKAFVSHYKVDGFNNIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDLQHVIATAPTHEGVSHVGGDMFDAIPNADAVF****
Disordered Region (DISOPRED)
****T**TMKAFVSHYKVDGFNNIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDLQHVIATAPTHEGVSHVGGDMFDAIPNADAVFMKVA
Disordered Region (DISEMBL)
MACTTKITMKAFVSHYKVDGFNNIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDLQHVIATAPTHEGVSHVGGDMFDAIPNADAVFMKVA
Disordered Region (DISPRO)
****TKITMKAFVSHYKVDGFNNIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDLQHVIATAPTHEGVSHVGGDMFDAIPNADAVFMKVA
Transmembrane Helix (TMHMM)
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Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MACTTKITMKAFVSHYKVDGFNNIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDLQHVIATAPTHEGVSHVGGDMFDAIPNADAVFMKVA
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	90	2.2.26 [Sep-21-2011]
Q43046	365	Caffeic acid 3-O-methyltr	N/A	no	0.911	0.224	0.630	2e-23
Q00763	365	Caffeic acid 3-O-methyltr	N/A	no	0.911	0.224	0.619	9e-23
P28002	365	Caffeic acid 3-O-methyltr	N/A	no	0.955	0.235	0.602	1e-22
Q43609	365	Caffeic acid 3-O-methyltr	N/A	no	0.955	0.235	0.602	2e-22
Q41086	364	Caffeic acid 3-O-methyltr	N/A	no	0.955	0.236	0.590	2e-22
Q43047	364	Caffeic acid 3-O-methyltr	N/A	no	0.911	0.225	0.607	3e-22
Q9FK25	363	Flavone 3'-O-methyltransf	yes	no	0.955	0.236	0.556	4e-22
Q8GU25	365	Caffeic acid 3-O-methyltr	N/A	no	0.955	0.235	0.590	6e-22
Q8W013	363	Caffeic acid 3-O-methyltr	N/A	no	0.955	0.236	0.545	7e-22
Q9SWC2	313	Caffeic acid 3-O-methyltr	N/A	no	0.911	0.261	0.595	1e-21

>sp|Q43046|COMT1_POPKI Caffeic acid 3-O-methyltransferase 1 OS=Populus kitakamiensis GN=HOMT1 PE=3 SV=1

 Score =  107 bits (268), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 53/84 (63%), Positives = 62/84 (73%), Gaps = 2/84 (2%)

Query: 5   TKITMKAFVSHYKVDGFNNIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDLQHVIATAPT 64
           + ITMK  +  YK  GF  + S+VDVGGGTG V+  IV  YP IKGINFDL HVI  AP+
Sbjct: 184 STITMKKILETYK--GFEGLTSLVDVGGGTGAVVNTIVSKYPSIKGINFDLPHVIEDAPS 241

Query: 65  HEGVSHVGGDMFDAIPNADAVFMK 88
           + GV HVGGDMF ++PNADAVFMK
Sbjct: 242 YPGVEHVGGDMFVSVPNADAVFMK 265

Catalyzes the conversion of caffeic acid to ferulic acid and of 5-hydroxyferulic acid to sinapic acid. The resulting products may subsequently be converted to the corresponding alcohols that are incorporated into lignins.
Populus kitakamiensis (taxid: 34292)
EC: 2EC: .EC: 1EC: .EC: 1EC: .EC: 6EC: 8

>sp|Q00763|COMT1_POPTM Caffeic acid 3-O-methyltransferase 1 OS=Populus tremuloides GN=OMT1 PE=1 SV=1

 Score =  105 bits (262), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 52/84 (61%), Positives = 61/84 (72%), Gaps = 2/84 (2%)

Query: 5   TKITMKAFVSHYKVDGFNNIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDLQHVIATAPT 64
           + ITMK  +  YK  GF  + S+VDVGGGTG V+  IV  YP IKGINFDL HVI  AP+
Sbjct: 184 STITMKKILETYK--GFEGLTSLVDVGGGTGAVVNTIVSKYPSIKGINFDLPHVIEDAPS 241

Query: 65  HEGVSHVGGDMFDAIPNADAVFMK 88
           + GV HVGGDMF ++P ADAVFMK
Sbjct: 242 YPGVEHVGGDMFVSVPKADAVFMK 265

Catalyzes the conversion of caffeic acid to ferulic acid and of 5-hydroxyferulic acid to sinapic acid. The resulting products may subsequently be converted to the corresponding alcohols that are incorporated into lignins.

Populus tremuloides (taxid: 3693)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 6

EC: 8

>sp|P28002|COMT1_MEDSA Caffeic acid 3-O-methyltransferase OS=Medicago sativa PE=1 SV=1

 Score =  105 bits (261), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 53/88 (60%), Positives = 63/88 (71%), Gaps = 2/88 (2%)

Query: 1   MACTTKITMKAFVSHYKVDGFNNIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDLQHVIA 60
           M+  + ITMK  +  Y   GF  ++S+VDVGGGTG V+  IV  YP IKGINFDL HVI 
Sbjct: 180 MSDHSTITMKKILETYT--GFEGLKSLVDVGGGTGAVINTIVSKYPTIKGINFDLPHVIE 237

Query: 61  TAPTHEGVSHVGGDMFDAIPNADAVFMK 88
            AP++ GV HVGGDMF +IP ADAVFMK
Sbjct: 238 DAPSYPGVEHVGGDMFVSIPKADAVFMK 265

Catalyzes the conversion of caffeic acid to ferulic acid and of 5-hydroxyferulic acid to sinapic acid. The resulting products may subsequently be converted to the corresponding alcohols that are incorporated into lignins.

Medicago sativa (taxid: 3879)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 6

EC: 8

>sp|Q43609|COMT1_PRUDU Caffeic acid 3-O-methyltransferase OS=Prunus dulcis GN=COMT1 PE=2 SV=1

 Score =  103 bits (258), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 53/88 (60%), Positives = 61/88 (69%), Gaps = 2/88 (2%)

Query: 1   MACTTKITMKAFVSHYKVDGFNNIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDLQHVIA 60
           MA  + ITMK  +  YK  GF  + S+VDVGGGTG VL  IV  YP IKGINFDL HVI 
Sbjct: 180 MADHSTITMKKILETYK--GFEGLTSVVDVGGGTGAVLNMIVSKYPSIKGINFDLPHVIE 237

Query: 61  TAPTHEGVSHVGGDMFDAIPNADAVFMK 88
            AP + GV HVGGDMF ++P  DA+FMK
Sbjct: 238 DAPQYPGVEHVGGDMFVSVPKGDAIFMK 265

Catalyzes the conversion of caffeic acid to ferulic acid and of 5-hydroxyferulic acid to sinapic acid. The resulting products may subsequently be converted to the corresponding alcohols that are incorporated into lignins.

Prunus dulcis (taxid: 3755)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 6

EC: 8

>sp|Q41086|COMT2_POPTM Caffeic acid 3-O-methyltransferase 2 OS=Populus tremuloides GN=OMT2 PE=3 SV=1

 Score =  103 bits (258), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 52/88 (59%), Positives = 63/88 (71%), Gaps = 2/88 (2%)

Query: 1   MACTTKITMKAFVSHYKVDGFNNIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDLQHVIA 60
           M+  +K+ MK  +  YK  GF  + S+VDVGGGTG V++ IV  YP IKGINFDL HVIA
Sbjct: 179 MSVHSKMAMKKILETYK--GFEGLASLVDVGGGTGAVVSTIVSKYPSIKGINFDLPHVIA 236

Query: 61  TAPTHEGVSHVGGDMFDAIPNADAVFMK 88
            AP   GV +VGGDMF ++P ADAVFMK
Sbjct: 237 DAPAFPGVENVGGDMFVSVPKADAVFMK 264

Catalyzes the conversion of caffeic acid to ferulic acid and of 5-hydroxyferulic acid to sinapic acid. The resulting products may subsequently be converted to the corresponding alcohols that are incorporated into lignins.

Populus tremuloides (taxid: 3693)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 6

EC: 8

>sp|Q43047|COMT3_POPKI Caffeic acid 3-O-methyltransferase 3 OS=Populus kitakamiensis GN=HOMT3 PE=3 SV=1

 Score =  103 bits (257), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 51/84 (60%), Positives = 61/84 (72%), Gaps = 2/84 (2%)

Query: 5   TKITMKAFVSHYKVDGFNNIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDLQHVIATAPT 64
           +K+ MK  +  YK  GF  + S+VDVGGGTG V++ IV  YP IKGINFDL HVIA AP 
Sbjct: 183 SKMAMKKILESYK--GFEGLASLVDVGGGTGAVVSTIVSKYPSIKGINFDLPHVIADAPA 240

Query: 65  HEGVSHVGGDMFDAIPNADAVFMK 88
             GV +VGGDMF ++P ADAVFMK
Sbjct: 241 FPGVENVGGDMFVSVPKADAVFMK 264

Catalyzes the conversion of caffeic acid to ferulic acid and of 5-hydroxyferulic acid to sinapic acid. The resulting products may subsequently be converted to the corresponding alcohols that are incorporated into lignins.

Populus kitakamiensis (taxid: 34292)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 6

EC: 8

>sp|Q9FK25|OMT1_ARATH Flavone 3'-O-methyltransferase 1 OS=Arabidopsis thaliana GN=OMT1 PE=1 SV=1

 Score =  103 bits (256), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 49/88 (55%), Positives = 61/88 (69%), Gaps = 2/88 (2%)

Query: 1   MACTTKITMKAFVSHYKVDGFNNIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDLQHVIA 60
           M+  + ITMK  +  YK  GF  + S+VDVGGG G  L  IV  YP++KGINFDL HVI 
Sbjct: 178 MSNHSTITMKKILETYK--GFEGLTSLVDVGGGIGATLKMIVSKYPNLKGINFDLPHVIE 235

Query: 61  TAPTHEGVSHVGGDMFDAIPNADAVFMK 88
            AP+H G+ HVGGDMF ++P  DA+FMK
Sbjct: 236 DAPSHPGIEHVGGDMFVSVPKGDAIFMK 263

Methylates OH residues of flavonoid compounds. Substrate preference is quercetin > myricetin >> luteolin. Dihydroquercetin is not a substrate.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 7

EC: 6

>sp|Q8GU25|COMT1_ROSCH Caffeic acid 3-O-methyltransferase OS=Rosa chinensis GN=COMT1 PE=2 SV=1

 Score =  102 bits (255), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 52/88 (59%), Positives = 61/88 (69%), Gaps = 2/88 (2%)

Query: 1   MACTTKITMKAFVSHYKVDGFNNIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDLQHVIA 60
           MA  + ITMK  +  YK  GF  + S+VDVGGGTG V+  IV  YP IKGINFDL HVI 
Sbjct: 180 MADHSTITMKKILETYK--GFEGLTSIVDVGGGTGAVVNMIVSKYPSIKGINFDLPHVIE 237

Query: 61  TAPTHEGVSHVGGDMFDAIPNADAVFMK 88
            AP + GV HVGGDMF ++P  DA+FMK
Sbjct: 238 DAPQYPGVQHVGGDMFVSVPKGDAIFMK 265

Catalyzes the conversion of caffeic acid to ferulic acid and of 5-hydroxyferulic acid to sinapic acid. The resulting products may subsequently be converted to the corresponding alcohols that are incorporated into lignins.

Rosa chinensis (taxid: 74649)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 6

EC: 8

>sp|Q8W013|COMT1_CATRO Caffeic acid 3-O-methyltransferase OS=Catharanthus roseus GN=COMT1 PE=2 SV=1

 Score =  102 bits (254), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 48/88 (54%), Positives = 61/88 (69%), Gaps = 2/88 (2%)

Query: 1   MACTTKITMKAFVSHYKVDGFNNIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDLQHVIA 60
           M+  + I MK  +  Y+  GF  ++++VDVGGGTG  L  IV  YP IKGINFDL HVI 
Sbjct: 180 MSNHSTIIMKKILEIYQ--GFQGLKTVVDVGGGTGATLNMIVSKYPSIKGINFDLPHVIE 237

Query: 61  TAPTHEGVSHVGGDMFDAIPNADAVFMK 88
            AP++ GV HVGGDMF ++P  DA+FMK
Sbjct: 238 DAPSYPGVDHVGGDMFVSVPKGDAIFMK 265

Catalyzes the conversion of caffeic acid to ferulic acid and of 5-hydroxyferulic acid to sinapic acid. The resulting products may subsequently be converted to the corresponding alcohols that are incorporated into lignins.

Catharanthus roseus (taxid: 4058)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 6

EC: 8

>sp|Q9SWC2|COMT1_EUCGL Caffeic acid 3-O-methyltransferase (Fragment) OS=Eucalyptus globulus GN=COMT1 PE=3 SV=1

 Score =  101 bits (252), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 50/84 (59%), Positives = 60/84 (71%), Gaps = 2/84 (2%)

Query: 5   TKITMKAFVSHYKVDGFNNIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDLQHVIATAPT 64
           + I MK  +  Y  +GF  ++++VDVGGGTG +L  IV  YP IKGINFDL HVI  AP+
Sbjct: 166 STIMMKKILETY--NGFEGLKTVVDVGGGTGAILNMIVAKYPSIKGINFDLPHVIEDAPS 223

Query: 65  HEGVSHVGGDMFDAIPNADAVFMK 88
           + GV HVGGDMF  IPN DAVFMK
Sbjct: 224 YPGVEHVGGDMFVNIPNGDAVFMK 247

Catalyzes the conversion of caffeic acid to ferulic acid and of 5-hydroxyferulic acid to sinapic acid. The resulting products may subsequently be converted to the corresponding alcohols that are incorporated into lignins.

Eucalyptus globulus (taxid: 34317)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 6

EC: 8

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	90
118486094	354	unknown [Populus trichocarpa]	0.966	0.245	0.727	7e-33
224103575	354	alkaloid o-methyltransferase related [Po	0.966	0.245	0.715	2e-32
183585187	351	caffeic acid 3-O-methyltransferase [Popu	0.966	0.247	0.693	1e-30
429326472	351	caffeic acid O-methyltransferase [Populu	0.966	0.247	0.693	1e-30
224127144	351	alkaloid o-methyltransferase related [Po	0.966	0.247	0.693	2e-30
255553835	351	o-methyltransferase, putative [Ricinus c	0.966	0.247	0.681	3e-29
388502510	369	unknown [Lotus japonicus]	0.966	0.235	0.636	3e-28
255553833	352	o-methyltransferase, putative [Ricinus c	0.966	0.247	0.659	8e-28
225447213	375	PREDICTED: (RS)-norcoclaurine 6-O-methyl	0.966	0.232	0.704	1e-27
147809600	375	hypothetical protein VITISV_006040 [Viti	0.966	0.232	0.704	2e-27

>gi|118486094|gb|ABK94890.1| unknown [Populus trichocarpa]

 Score =  144 bits (363), Expect = 7e-33,   Method: Composition-based stats.
 Identities = 64/88 (72%), Positives = 78/88 (88%), Gaps = 1/88 (1%)

Query: 1   MACTTKITMKAFVSHYKVDGFNNIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDLQHVIA 60
           MACT+ ITM+A +SHYK DGFNNIRS+VDV GG G  +AEIV++YPHI+GINFDL HV+A
Sbjct: 166 MACTSNITMRAILSHYK-DGFNNIRSLVDVAGGIGGHVAEIVRAYPHIEGINFDLPHVVA 224

Query: 61  TAPTHEGVSHVGGDMFDAIPNADAVFMK 88
           TAP +EGVSHV G+MF+AIPNADA+FM+
Sbjct: 225 TAPKYEGVSHVAGNMFEAIPNADAIFMQ 252

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224103575|ref|XP_002334037.1| alkaloid o-methyltransferase related [Populus trichocarpa] gi|224124568|ref|XP_002319364.1| alkaloid o-methyltransferase related [Populus trichocarpa] gi|222839673|gb|EEE77996.1| alkaloid o-methyltransferase related [Populus trichocarpa] gi|222857740|gb|EEE95287.1| alkaloid o-methyltransferase related [Populus trichocarpa]

 Score =  142 bits (358), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 63/88 (71%), Positives = 78/88 (88%), Gaps = 1/88 (1%)

Query: 1   MACTTKITMKAFVSHYKVDGFNNIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDLQHVIA 60
           MACT+ ITM+A +SHYK DGFNNIRS+VDV GG G  +AEIV++YPHI+GINFDL HV+A
Sbjct: 166 MACTSNITMRAILSHYK-DGFNNIRSLVDVAGGIGGHVAEIVRAYPHIEGINFDLPHVVA 224

Query: 61  TAPTHEGVSHVGGDMFDAIPNADAVFMK 88
           TAP +EGVSHV G+MF+AIPNADA+F++
Sbjct: 225 TAPKYEGVSHVAGNMFEAIPNADAIFIQ 252

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|183585187|gb|ACC63885.1| caffeic acid 3-O-methyltransferase [Populus trichocarpa]

 Score =  137 bits (344), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 61/88 (69%), Positives = 75/88 (85%), Gaps = 1/88 (1%)

Query: 1   MACTTKITMKAFVSHYKVDGFNNIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDLQHVIA 60
           +ACT KI M+A VSHYK  GF+++ ++VDVGGGTG  LAEIVK+YPHIKGINFDL HV+A
Sbjct: 166 LACTAKIIMRAVVSHYK-GGFDDVETLVDVGGGTGGNLAEIVKAYPHIKGINFDLPHVVA 224

Query: 61  TAPTHEGVSHVGGDMFDAIPNADAVFMK 88
            AP + GVSHVGG+ F+AIPNAD++FMK
Sbjct: 225 AAPAYNGVSHVGGNFFEAIPNADSIFMK 252

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|429326472|gb|AFZ78576.1| caffeic acid O-methyltransferase [Populus tomentosa]

 Score =  136 bits (343), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 61/88 (69%), Positives = 74/88 (84%), Gaps = 1/88 (1%)

Query: 1   MACTTKITMKAFVSHYKVDGFNNIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDLQHVIA 60
           +ACT KI M+A VSHYK  GF+++ ++VDVGGGTG  LAEIVK+YPHIKGINFDL HV+A
Sbjct: 166 LACTAKIIMRAVVSHYK-GGFDDVETLVDVGGGTGGNLAEIVKAYPHIKGINFDLPHVVA 224

Query: 61  TAPTHEGVSHVGGDMFDAIPNADAVFMK 88
            AP + GVSHVGG  F+AIPNAD++FMK
Sbjct: 225 AAPAYNGVSHVGGSFFEAIPNADSIFMK 252

Source: Populus tomentosa

Species: Populus tomentosa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224127144|ref|XP_002329411.1| alkaloid o-methyltransferase related [Populus trichocarpa] gi|222870461|gb|EEF07592.1| alkaloid o-methyltransferase related [Populus trichocarpa]

 Score =  136 bits (343), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 61/88 (69%), Positives = 74/88 (84%), Gaps = 1/88 (1%)

Query: 1   MACTTKITMKAFVSHYKVDGFNNIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDLQHVIA 60
           +ACT KI M+A VSHYK  GF+++ ++VDVGGGTG  LAEIVK+YPHIKGINFDL HV+A
Sbjct: 166 LACTAKIIMRAVVSHYK-GGFDDVETLVDVGGGTGGNLAEIVKAYPHIKGINFDLPHVVA 224

Query: 61  TAPTHEGVSHVGGDMFDAIPNADAVFMK 88
            AP + GVSHVGG  F+AIPNAD++FMK
Sbjct: 225 AAPAYNGVSHVGGSFFEAIPNADSIFMK 252

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255553835|ref|XP_002517958.1| o-methyltransferase, putative [Ricinus communis] gi|223542940|gb|EEF44476.1| o-methyltransferase, putative [Ricinus communis]

 Score =  132 bits (332), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 60/88 (68%), Positives = 75/88 (85%), Gaps = 1/88 (1%)

Query: 1   MACTTKITMKAFVSHYKVDGFNNIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDLQHVIA 60
           +ACT KI MKA +S YK DGF+ I ++VDVGGGTG  LAEIVK+YPHIK +NFDL HV+A
Sbjct: 166 LACTAKIVMKAVLSGYK-DGFDAITTLVDVGGGTGGNLAEIVKAYPHIKTLNFDLPHVVA 224

Query: 61  TAPTHEGVSHVGGDMFDAIPNADAVFMK 88
           TAP  +G++HVGG+MF++IPNADA+FMK
Sbjct: 225 TAPAFDGIAHVGGNMFESIPNADAIFMK 252

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388502510|gb|AFK39321.1| unknown [Lotus japonicus]

 Score =  129 bits (323), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 56/88 (63%), Positives = 72/88 (81%), Gaps = 1/88 (1%)

Query: 1   MACTTKITMKAFVSHYKVDGFNNIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDLQHVIA 60
           M CT +I  +A +S YK DGFN I S+VDVGGG G  L+EIV++YPHIK INFDL HV+A
Sbjct: 184 MVCTARIVPRAVISGYK-DGFNQIESLVDVGGGIGGSLSEIVRAYPHIKAINFDLPHVVA 242

Query: 61  TAPTHEGVSHVGGDMFDAIPNADAVFMK 88
           TAP ++G++HVGGDMF ++PNADA++MK
Sbjct: 243 TAPPYDGITHVGGDMFVSVPNADAIYMK 270

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255553833|ref|XP_002517957.1| o-methyltransferase, putative [Ricinus communis] gi|223542939|gb|EEF44475.1| o-methyltransferase, putative [Ricinus communis]

 Score =  127 bits (319), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 58/88 (65%), Positives = 75/88 (85%), Gaps = 1/88 (1%)

Query: 1   MACTTKITMKAFVSHYKVDGFNNIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDLQHVIA 60
           M+CT ++T++A +  YK DGF +++S+VDVGGGTG ++ EIVKS+PHIKGIN+DL HV++
Sbjct: 167 MSCTARLTIRAILEGYK-DGFCSMKSLVDVGGGTGDLVTEIVKSHPHIKGINYDLAHVVS 225

Query: 61  TAPTHEGVSHVGGDMFDAIPNADAVFMK 88
           TAP +EGV HVGGDMF AIPNADAV MK
Sbjct: 226 TAPAYEGVCHVGGDMFQAIPNADAVIMK 253

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225447213|ref|XP_002277602.1| PREDICTED: (RS)-norcoclaurine 6-O-methyltransferase [Vitis vinifera]

 Score =  126 bits (317), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 62/88 (70%), Positives = 76/88 (86%), Gaps = 1/88 (1%)

Query: 1   MACTTKITMKAFVSHYKVDGFNNIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDLQHVIA 60
           MACT K+ M   V+ YK DGF +IR++VDVGGGTG  +AE+VK+YPHIKGINFDL HV+A
Sbjct: 188 MACTAKVVMGEVVAAYK-DGFGSIRTLVDVGGGTGGAVAEVVKAYPHIKGINFDLPHVVA 246

Query: 61  TAPTHEGVSHVGGDMFDAIPNADAVFMK 88
           +AP +EGVSHVGGDMF++IPNADA+FMK
Sbjct: 247 SAPAYEGVSHVGGDMFESIPNADAIFMK 274

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147809600|emb|CAN64492.1| hypothetical protein VITISV_006040 [Vitis vinifera]

 Score =  126 bits (316), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 62/88 (70%), Positives = 76/88 (86%), Gaps = 1/88 (1%)

Query: 1   MACTTKITMKAFVSHYKVDGFNNIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDLQHVIA 60
           MACT K+ M   V+ YK DGF +IR++VDVGGGTG  +AE+VK+YPHIKGINFDL HV+A
Sbjct: 188 MACTAKVVMGEVVAAYK-DGFGSIRTLVDVGGGTGGAVAEVVKAYPHIKGINFDLPHVVA 246

Query: 61  TAPTHEGVSHVGGDMFDAIPNADAVFMK 88
           +AP +EGVSHVGGDMF++IPNADA+FMK
Sbjct: 247 SAPAYEGVSHVGGDMFESIPNADAIFMK 274

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	90
TAIR|locus:2153423	363	OMT1 "AT5G54160" [Arabidopsis	0.955	0.236	0.556	4.3e-22
TAIR|locus:2015519	205	AT1G62900 [Arabidopsis thalian	0.955	0.419	0.511	1e-20
TAIR|locus:2015223	381	AT1G63140 [Arabidopsis thalian	0.955	0.225	0.511	1.5e-20
TAIR|locus:2204695	381	AT1G77530 [Arabidopsis thalian	0.955	0.225	0.488	1.3e-19
TAIR|locus:2034016	363	AT1G51990 [Arabidopsis thalian	0.911	0.225	0.511	2.1e-19
TAIR|locus:2204680	381	AT1G77520 [Arabidopsis thalian	0.955	0.225	0.5	3.8e-19
TAIR|locus:2166193	334	AT5G37170 [Arabidopsis thalian	0.955	0.257	0.471	8.7e-18
TAIR|locus:2102038	359	AT3G53140 [Arabidopsis thalian	0.866	0.217	0.518	1.1e-17
UNIPROTKB|Q84N28	360	OMT1 "Flavone O-methyltransfer	0.888	0.222	0.512	3.2e-17
TAIR|locus:2164087	378	AT5G53810 [Arabidopsis thalian	0.911	0.216	0.494	4e-17

TAIR|locus:2153423 OMT1 "AT5G54160" [Arabidopsis thaliana (taxid:3702)]

 Score = 257 (95.5 bits), Expect = 4.3e-22, P = 4.3e-22
 Identities = 49/88 (55%), Positives = 61/88 (69%)

Query:     1 MACTTKITMKAFVSHYKVDGFNNIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDLQHVIA 60
             M+  + ITMK  +  YK  GF  + S+VDVGGG G  L  IV  YP++KGINFDL HVI 
Sbjct:   178 MSNHSTITMKKILETYK--GFEGLTSLVDVGGGIGATLKMIVSKYPNLKGINFDLPHVIE 235

Query:    61 TAPTHEGVSHVGGDMFDAIPNADAVFMK 88
              AP+H G+ HVGGDMF ++P  DA+FMK
Sbjct:   236 DAPSHPGIEHVGGDMFVSVPKGDAIFMK 263

GO:0030744 "luteolin O-methyltransferase activity" evidence=IDA

GO:0030755 "quercetin 3-O-methyltransferase activity" evidence=IDA

GO:0033799 "myricetin 3'-O-methyltransferase activity" evidence=IDA

GO:0047763 "caffeate O-methyltransferase activity" evidence=ISS;IMP

GO:0051555 "flavonol biosynthetic process" evidence=IDA

GO:0009809 "lignin biosynthetic process" evidence=IMP

GO:0005634 "nucleus" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

GO:0006598 "polyamine catabolic process" evidence=RCA

GO:0009611 "response to wounding" evidence=RCA

GO:0009698 "phenylpropanoid metabolic process" evidence=RCA

GO:0009805 "coumarin biosynthetic process" evidence=RCA

GO:0009963 "positive regulation of flavonoid biosynthetic process" evidence=RCA

GO:0016126 "sterol biosynthetic process" evidence=RCA

GO:0042398 "cellular modified amino acid biosynthetic process" evidence=RCA

GO:0005829 "cytosol" evidence=TAS

TAIR|locus:2015519 AT1G62900 [Arabidopsis thaliana (taxid:3702)]

 Score = 244 (91.0 bits), Expect = 1.0e-20, P = 1.0e-20
 Identities = 45/88 (51%), Positives = 61/88 (69%)

Query:     1 MACTTKITMKAFVSHYKVDGFNNIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDLQHVIA 60
             M+  + + MK  +  YK  GF ++ ++VDVGGG GT++ ++   YPHIKGINFDL  V+A
Sbjct:    21 MSEASTLIMKKVLEVYK--GFEDVNTLVDVGGGIGTIIGQVTSKYPHIKGINFDLASVLA 78

Query:    61 TAPTHEGVSHVGGDMFDAIPNADAVFMK 88
              AP ++GV HV GDMF  IP  DA+FMK
Sbjct:    79 HAPFNKGVEHVSGDMFKEIPKGDAIFMK 106

GO:0008171 "O-methyltransferase activity" evidence=IEA

GO:0005829 "cytosol" evidence=TAS

TAIR|locus:2015223 AT1G63140 [Arabidopsis thaliana (taxid:3702)]

 Score = 244 (91.0 bits), Expect = 1.5e-20, P = 1.5e-20
 Identities = 45/88 (51%), Positives = 61/88 (69%)

Query:     1 MACTTKITMKAFVSHYKVDGFNNIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDLQHVIA 60
             M+  + + MK  +  YK  GF ++ ++VDVGGG GT++ ++   YPHIKGINFDL  V+A
Sbjct:   197 MSEASTLIMKKVLEVYK--GFEDVNTLVDVGGGIGTIIGQVTSKYPHIKGINFDLASVLA 254

Query:    61 TAPTHEGVSHVGGDMFDAIPNADAVFMK 88
              AP ++GV HV GDMF  IP  DA+FMK
Sbjct:   255 HAPFNKGVEHVSGDMFKEIPKGDAIFMK 282

GO:0005737 "cytoplasm" evidence=ISM

GO:0008168 "methyltransferase activity" evidence=IEA

GO:0008171 "O-methyltransferase activity" evidence=IEA

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0005829 "cytosol" evidence=TAS

TAIR|locus:2204695 AT1G77530 [Arabidopsis thaliana (taxid:3702)]

 Score = 236 (88.1 bits), Expect = 1.3e-19, P = 1.3e-19
 Identities = 43/88 (48%), Positives = 59/88 (67%)

Query:     1 MACTTKITMKAFVSHYKVDGFNNIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDLQHVIA 60
             M+ ++ + MK  +  Y+  GF ++ ++VDVGGG GT+L  I   YPHIKG+NFDL  V+ 
Sbjct:   197 MSESSTMVMKKVLEEYR--GFEDVNTLVDVGGGIGTILGLITSKYPHIKGVNFDLAQVLT 254

Query:    61 TAPTHEGVSHVGGDMFDAIPNADAVFMK 88
              AP + GV HV GDMF  +P  DA+FMK
Sbjct:   255 QAPFYPGVKHVSGDMFIEVPKGDAIFMK 282

GO:0005634 "nucleus" evidence=ISM

GO:0008168 "methyltransferase activity" evidence=IEA

GO:0008171 "O-methyltransferase activity" evidence=IEA;ISS

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0009809 "lignin biosynthetic process" evidence=ISS

GO:0005829 "cytosol" evidence=TAS

TAIR|locus:2034016 AT1G51990 [Arabidopsis thaliana (taxid:3702)]

 Score = 233 (87.1 bits), Expect = 2.1e-19, P = 2.1e-19
 Identities = 43/84 (51%), Positives = 54/84 (64%)

Query:     5 TKITMKAFVSHYKVDGFNNIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDLQHVIATAPT 64
             T I MK  + +Y   GF  +   VDVGG  G+ LA+I+  YPHIKGINFDL H++  AP 
Sbjct:   182 TSIVMKKILENYI--GFEGVSDFVDVGGSLGSNLAQILSKYPHIKGINFDLPHIVKEAPQ 239

Query:    65 HEGVSHVGGDMFDAIPNADAVFMK 88
               GV H+GGDMFD IP  + + MK
Sbjct:   240 IHGVEHIGGDMFDEIPRGEVILMK 263

GO:0008168 "methyltransferase activity" evidence=IEA

GO:0008171 "O-methyltransferase activity" evidence=IEA;ISS

GO:0009507 "chloroplast" evidence=ISM

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0009809 "lignin biosynthetic process" evidence=ISS

GO:0005829 "cytosol" evidence=TAS

TAIR|locus:2204680 AT1G77520 [Arabidopsis thaliana (taxid:3702)]

 Score = 232 (86.7 bits), Expect = 3.8e-19, P = 3.8e-19
 Identities = 44/88 (50%), Positives = 58/88 (65%)

Query:     1 MACTTKITMKAFVSHYKVDGFNNIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDLQHVIA 60
             M+  + + MK  +  Y+  GF ++ ++VDVGGG GTVL  +   YPHIKG+NFDL  V+ 
Sbjct:   197 MSEPSTMIMKKVLDVYR--GFEDVNTLVDVGGGNGTVLGLVTSKYPHIKGVNFDLAQVLT 254

Query:    61 TAPTHEGVSHVGGDMFDAIPNADAVFMK 88
              AP + GV HV GDMF  +P  DAVFMK
Sbjct:   255 QAPFYPGVEHVSGDMFVEVPKGDAVFMK 282

GO:0005634 "nucleus" evidence=ISM

GO:0008168 "methyltransferase activity" evidence=IEA

GO:0008171 "O-methyltransferase activity" evidence=IEA;ISS

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0009809 "lignin biosynthetic process" evidence=ISS

GO:0005829 "cytosol" evidence=TAS

TAIR|locus:2166193 AT5G37170 [Arabidopsis thaliana (taxid:3702)]

 Score = 217 (81.4 bits), Expect = 8.7e-18, P = 8.7e-18
 Identities = 42/89 (47%), Positives = 61/89 (68%)

Query:     1 MACTTKITMKAFVSHYKVDGFNNIRSMVDVGGGTGTVLAEIVKS-YPHIKGINFDLQHVI 59
             M+ ++ + M   +  YK  G  ++ ++VD+GGG GT+L  ++ S YP IKGINFDL  V+
Sbjct:   149 MSDSSTMIMTKILEVYK--GLKDVNTLVDIGGGLGTILNLVISSKYPQIKGINFDLAAVL 206

Query:    60 ATAPTHEGVSHVGGDMFDAIPNADAVFMK 88
             ATAP++ GV HV GDMF  +P  DA+FM+
Sbjct:   207 ATAPSYPGVEHVPGDMFIDVPKGDAIFMR 235

GO:0005634 "nucleus" evidence=ISM

GO:0008168 "methyltransferase activity" evidence=IEA

GO:0008171 "O-methyltransferase activity" evidence=IEA;ISS

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0009809 "lignin biosynthetic process" evidence=ISS

GO:0005829 "cytosol" evidence=TAS

TAIR|locus:2102038 AT3G53140 [Arabidopsis thaliana (taxid:3702)]

 Score = 218 (81.8 bits), Expect = 1.1e-17, P = 1.1e-17
 Identities = 42/81 (51%), Positives = 58/81 (71%)

Query:     9 MKAFVSHYKVDGFNNIRSMVDVGGGTGTVLAEIVKSYPHIK-GINFDLQHVIATAPTHEG 67
             MKA +  Y  DGF ++  +VDVGG  G  L  I++ +P+++ GINFDL  V+A AP   G
Sbjct:   182 MKAILDGY--DGFKSVDILVDVGGSAGDCLRMILQQFPNVREGINFDLPEVVAKAPNIPG 239

Query:    68 VSHVGGDMFDAIPNADAVFMK 88
             V+HVGGDMF ++P+ADA+FMK
Sbjct:   240 VTHVGGDMFQSVPSADAIFMK 260

GO:0008168 "methyltransferase activity" evidence=IEA

GO:0008171 "O-methyltransferase activity" evidence=IEA

GO:0046983 "protein dimerization activity" evidence=IEA

UNIPROTKB|Q84N28 OMT1 "Flavone O-methyltransferase 1" [Triticum aestivum (taxid:4565)]

 Score = 214 (80.4 bits), Expect = 3.2e-17, P = 3.2e-17
 Identities = 42/82 (51%), Positives = 53/82 (64%)

Query:     7 ITMKAFVSHYKVDGFNNIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDLQHVIATAPTHE 66
             I  K  +  YK  GF  + ++VDVGGG G  +  I  +YP IKGINFDL HVI+ A    
Sbjct:   183 IITKKLLEVYK--GFEGLGTIVDVGGGVGATVGAITAAYPAIKGINFDLPHVISEAQPFP 240

Query:    67 GVSHVGGDMFDAIPNADAVFMK 88
             GV+HVGGDMF  +P+ DA+ MK
Sbjct:   241 GVTHVGGDMFQKVPSGDAILMK 262

GO:0009611 "response to wounding" evidence=IDA

GO:0009723 "response to ethylene stimulus" evidence=IDA

GO:0009751 "response to salicylic acid stimulus" evidence=IDA

GO:0042542 "response to hydrogen peroxide" evidence=IDA

TAIR|locus:2164087 AT5G53810 [Arabidopsis thaliana (taxid:3702)]

 Score = 214 (80.4 bits), Expect = 4.0e-17, P = 4.0e-17
 Identities = 42/85 (49%), Positives = 57/85 (67%)

Query:     4 TTKITMKAFVSHYKVDGFNNIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDLQHVIATAP 63
             +T +T K  +  Y  +GF +++++VDVGGG G  L  I   YPH+ GINFDL  V+A A 
Sbjct:   198 STMVTEKV-LKFY--EGFKDVKTLVDVGGGLGNTLGLITSKYPHLIGINFDLAPVLANAH 254

Query:    64 THEGVSHVGGDMFDAIPNADAVFMK 88
             ++ GV+HV GDMF  IP  DA+FMK
Sbjct:   255 SYPGVNHVAGDMFIKIPKGDAIFMK 279

GO:0008168 "methyltransferase activity" evidence=IEA

GO:0008171 "O-methyltransferase activity" evidence=IEA

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0005829 "cytosol" evidence=TAS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	2.1.1	LOW CONFIDENCE prediction!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	90
pfam00891	239	pfam00891, Methyltransf_2, O-methyltransferase	5e-40
pfam12847	104	pfam12847, Methyltransf_18, Methyltransferase doma	0.002
PRK08287	187	PRK08287, PRK08287, cobalt-precorrin-6Y C(15)-meth	0.003

>gnl|CDD|216177 pfam00891, Methyltransf_2, O-methyltransferase

 Score =  131 bits (332), Expect = 5e-40
 Identities = 44/88 (50%), Positives = 61/88 (69%), Gaps = 2/88 (2%)

Query: 1   MACTTKITMKAFVSHYKVDGFNNIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDLQHVIA 60
           MA  +++ MK  +       F+ + S+VDVGGGTG + A IV++YPHIKGI FDL HVIA
Sbjct: 81  MAAHSRLVMKKILETAF--DFSGLSSLVDVGGGTGALAAAIVRAYPHIKGIVFDLPHVIA 138

Query: 61  TAPTHEGVSHVGGDMFDAIPNADAVFMK 88
            AP+ + V  VGGD F+++P ADA+ +K
Sbjct: 139 DAPSADRVEFVGGDFFESVPEADAILLK 166

This family includes a range of O-methyltransferases. These enzymes utilise S-adenosyl methionine. Length = 239

>gnl|CDD|221804 pfam12847, Methyltransf_18, Methyltransferase domain

 Score = 33.8 bits (78), Expect = 0.002
 Identities = 18/70 (25%), Positives = 33/70 (47%), Gaps = 10/70 (14%)

Query: 28 VDVGGGTGTVLAEIVKSYPHIKGINFDL-QHVIATAPTH------EGVSHVGGDM---FD 77
          +D+G GTG++  E+ + +P  +    DL   ++  A  +        ++ V GD     D
Sbjct: 6  LDIGCGTGSLAIELARLFPGARVTGVDLSPEMLELARENAKLALGPRITFVQGDAPDALD 65

Query: 78 AIPNADAVFM 87
           +   DAVF+
Sbjct: 66 LLEGFDAVFI 75

Protein in this family function as methyltransferases. Length = 104

>gnl|CDD|181354 PRK08287, PRK08287, cobalt-precorrin-6Y C(15)-methyltransferase; Validated

 Score = 34.2 bits (79), Expect = 0.003
 Identities = 19/77 (24%), Positives = 30/77 (38%), Gaps = 10/77 (12%)

Query: 20  GFNNIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDLQHVIATAPTHEGVSHVGGDMFDAI 79
             +  + ++DVG GTG+V  E    +P ++    +     A     E     G    D I
Sbjct: 28  ELHRAKHLIDVGAGTGSVSIEAALQFPSLQVTAIERNPD-ALRLIKENRQRFGCGNIDII 86

Query: 80  P---------NADAVFM 87
           P          ADA+F+
Sbjct: 87  PGEAPIELPGKADAIFI 103

Length = 187

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	90
PF00891	241	Methyltransf_2: O-methyltransferase; InterPro: IPR	99.87
TIGR02716	306	C20_methyl_CrtF C-20 methyltransferase BchU. Membe	99.71
PF12847	112	Methyltransf_18: Methyltransferase domain; PDB: 3G	99.61
KOG3178	342	consensus Hydroxyindole-O-methyltransferase and re	99.58
COG2890	280	HemK Methylase of polypeptide chain release factor	99.55
PRK14103	255	trans-aconitate 2-methyltransferase; Provisional	99.53
PRK01683	258	trans-aconitate 2-methyltransferase; Provisional	99.48
PF13847	152	Methyltransf_31: Methyltransferase domain; PDB: 3T	99.47
COG2226	238	UbiE Methylase involved in ubiquinone/menaquinone	99.47
COG4106	257	Tam Trans-aconitate methyltransferase [General fun	99.46
TIGR03587	204	Pse_Me-ase pseudaminic acid biosynthesis-associate	99.46
PRK08287	187	cobalt-precorrin-6Y C(15)-methyltransferase; Valid	99.45
PF05175	170	MTS: Methyltransferase small domain; InterPro: IPR	99.44
TIGR00536	284	hemK_fam HemK family putative methylases. The gene	99.41
TIGR03533	284	L3_gln_methyl protein-(glutamine-N5) methyltransfe	99.4
PRK15001	378	SAM-dependent 23S ribosomal RNA mG1835 methyltrans	99.39
PRK14966	423	unknown domain/N5-glutamine S-adenosyl-L-methionin	99.37
TIGR02752	231	MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone me	99.37
PF01209	233	Ubie_methyltran: ubiE/COQ5 methyltransferase famil	99.37
PRK11805	307	N5-glutamine S-adenosyl-L-methionine-dependent met	99.37
PRK00107	187	gidB 16S rRNA methyltransferase GidB; Reviewed	99.36
PRK15451	247	tRNA cmo(5)U34 methyltransferase; Provisional	99.36
COG2813	300	RsmC 16S RNA G1207 methylase RsmC [Translation, ri	99.35
PLN02233	261	ubiquinone biosynthesis methyltransferase	99.35
PLN02244	340	tocopherol O-methyltransferase	99.35
TIGR00740	239	methyltransferase, putative. A simple BLAST search	99.34
COG2242	187	CobL Precorrin-6B methylase 2 [Coenzyme metabolism	99.34
TIGR02469	124	CbiT precorrin-6Y C5,15-methyltransferase (decarbo	99.34
TIGR02072	240	BioC biotin biosynthesis protein BioC. This enzyme	99.34
TIGR03704	251	PrmC_rel_meth putative protein-(glutamine-N5) meth	99.33
TIGR00138	181	gidB 16S rRNA methyltransferase GidB. GidB (glucos	99.32
PRK09328	275	N5-glutamine S-adenosyl-L-methionine-dependent met	99.31
PRK10258	251	biotin biosynthesis protein BioC; Provisional	99.31
PTZ00098	263	phosphoethanolamine N-methyltransferase; Provision	99.31
PRK01544	506	bifunctional N5-glutamine S-adenosyl-L-methionine-	99.31
TIGR03534	251	RF_mod_PrmC protein-(glutamine-N5) methyltransfera	99.3
PRK11207	197	tellurite resistance protein TehB; Provisional	99.3
PLN02336	475	phosphoethanolamine N-methyltransferase	99.29
PRK09489	342	rsmC 16S ribosomal RNA m2G1207 methyltransferase;	99.28
PRK08317	241	hypothetical protein; Provisional	99.28
PRK13944	205	protein-L-isoaspartate O-methyltransferase; Provis	99.28
TIGR00080	215	pimt protein-L-isoaspartate(D-aspartate) O-methylt	99.27
PF08242	99	Methyltransf_12: Methyltransferase domain; InterPr	99.27
PRK05785	226	hypothetical protein; Provisional	99.27
COG4123	248	Predicted O-methyltransferase [General function pr	99.26
COG2230	283	Cfa Cyclopropane fatty acid synthase and related m	99.26
PRK11088	272	rrmA 23S rRNA methyltransferase A; Provisional	99.26
PRK13942	212	protein-L-isoaspartate O-methyltransferase; Provis	99.26
PF08241	95	Methyltransf_11: Methyltransferase domain; InterPr	99.25
smart00650	169	rADc Ribosomal RNA adenine dimethylases.	99.25
PF13649	101	Methyltransf_25: Methyltransferase domain; PDB: 3B	99.24
PRK14896	258	ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1	99.22
smart00828	224	PKS_MT Methyltransferase in polyketide synthase (P	99.22
PRK00274	272	ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1	99.22
PLN02490	340	MPBQ/MSBQ methyltransferase	99.22
PRK06202	232	hypothetical protein; Provisional	99.21
TIGR00477	195	tehB tellurite resistance protein TehB. Part of a	99.21
PRK00216	239	ubiE ubiquinone/menaquinone biosynthesis methyltra	99.21
PRK04457	262	spermidine synthase; Provisional	99.2
smart00138	264	MeTrc Methyltransferase, chemotaxis proteins. Meth	99.2
PRK11036	255	putative S-adenosyl-L-methionine-dependent methylt	99.19
PRK07402	196	precorrin-6B methylase; Provisional	99.19
PRK06922	677	hypothetical protein; Provisional	99.19
TIGR00537	179	hemK_rel_arch HemK-related putative methylase. The	99.18
PLN02672	1082	methionine S-methyltransferase	99.17
PF07021	193	MetW: Methionine biosynthesis protein MetW; InterP	99.16
TIGR02021	219	BchM-ChlM magnesium protoporphyrin O-methyltransfe	99.15
TIGR00091	194	tRNA (guanine-N(7)-)-methyltransferase. In E. coli	99.15
PRK00121	202	trmB tRNA (guanine-N(7)-)-methyltransferase; Revie	99.15
PHA03411	279	putative methyltransferase; Provisional	99.14
PF13659	117	Methyltransf_26: Methyltransferase domain; PDB: 3G	99.14
PF02353	273	CMAS: Mycolic acid cyclopropane synthetase; InterP	99.13
PRK15068	322	tRNA mo(5)U34 methyltransferase; Provisional	99.12
PF05401	201	NodS: Nodulation protein S (NodS); InterPro: IPR00	99.12
PHA03412	241	putative methyltransferase; Provisional	99.12
TIGR00755	253	ksgA dimethyladenosine transferase. Alternate name	99.12
TIGR01934	223	MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis	99.11
KOG2904	328	consensus Predicted methyltransferase [General fun	99.11
PRK12335	287	tellurite resistance protein TehB; Provisional	99.11
KOG1540	296	consensus Ubiquinone biosynthesis methyltransferas	99.09
PLN03075	296	nicotianamine synthase; Provisional	99.09
PRK14121	390	tRNA (guanine-N(7)-)-methyltransferase; Provisiona	99.08
PTZ00338	294	dimethyladenosine transferase-like protein; Provis	99.08
PRK04266	226	fibrillarin; Provisional	99.08
PRK07580	230	Mg-protoporphyrin IX methyl transferase; Validated	99.07
PRK14967	223	putative methyltransferase; Provisional	99.07
PRK00377	198	cbiT cobalt-precorrin-6Y C(15)-methyltransferase;	99.07
PRK00312	212	pcm protein-L-isoaspartate O-methyltransferase; Re	99.07
PRK11873	272	arsM arsenite S-adenosylmethyltransferase; Reviewe	99.07
PLN02585	315	magnesium protoporphyrin IX methyltransferase	99.06
TIGR00452	314	methyltransferase, putative. Known examples to dat	99.06
PLN02396	322	hexaprenyldihydroxybenzoate methyltransferase	99.05
TIGR02081	194	metW methionine biosynthesis protein MetW. This pr	99.05
PRK13168	443	rumA 23S rRNA m(5)U1939 methyltransferase; Reviewe	99.04
COG2263	198	Predicted RNA methylase [Translation, ribosomal st	99.02
PLN02336	475	phosphoethanolamine N-methyltransferase	99.02
PF03848	192	TehB: Tellurite resistance protein TehB; InterPro:	99.02
PRK13943	322	protein-L-isoaspartate O-methyltransferase; Provis	99.01
PRK11705	383	cyclopropane fatty acyl phospholipid synthase; Pro	99.01
PRK10909	199	rsmD 16S rRNA m(2)G966-methyltransferase; Provisio	99.0
PRK14968	188	putative methyltransferase; Provisional	98.99
TIGR00406	288	prmA ribosomal protein L11 methyltransferase. Ribo	98.97
PF01135	209	PCMT: Protein-L-isoaspartate(D-aspartate) O-methyl	98.97
KOG1270	282	consensus Methyltransferases [Coenzyme transport a	98.97
PRK04148	134	hypothetical protein; Provisional	98.96
PRK01581	374	speE spermidine synthase; Validated	98.96
PRK03522	315	rumB 23S rRNA methyluridine methyltransferase; Rev	98.95
PF13489	161	Methyltransf_23: Methyltransferase domain; PDB: 3J	98.94
TIGR03840	213	TMPT_Se_Te thiopurine S-methyltransferase, Se/Te d	98.94
TIGR03438	301	probable methyltransferase. This model represents	98.93
PRK00811	283	spermidine synthase; Provisional	98.93
PLN02366	308	spermidine synthase	98.92
PF06325	295	PrmA: Ribosomal protein L11 methyltransferase (Prm	98.9
PRK00517	250	prmA ribosomal protein L11 methyltransferase; Revi	98.89
PRK11188	209	rrmJ 23S rRNA methyltransferase J; Provisional	98.89
COG2518	209	Pcm Protein-L-isoaspartate carboxylmethyltransfera	98.87
TIGR01177	329	conserved hypothetical protein TIGR01177. This fam	98.87
KOG1271	227	consensus Methyltransferases [General function pre	98.86
PTZ00146	293	fibrillarin; Provisional	98.86
PRK03612	521	spermidine synthase; Provisional	98.85
PRK14902	444	16S rRNA methyltransferase B; Provisional	98.85
PRK00050	296	16S rRNA m(4)C1402 methyltranserfase; Provisional	98.83
TIGR00438	188	rrmJ cell division protein FtsJ.	98.82
COG2264	300	PrmA Ribosomal protein L11 methylase [Translation,	98.82
PRK11727	321	23S rRNA mA1618 methyltransferase; Provisional	98.82
PRK10901	427	16S rRNA methyltransferase B; Provisional	98.81
TIGR00479	431	rumA 23S rRNA (uracil-5-)-methyltransferase RumA.	98.8
PF08123	205	DOT1: Histone methylation protein DOT1 ; InterPro:	98.79
PRK13255	218	thiopurine S-methyltransferase; Reviewed	98.78
KOG1541	270	consensus Predicted protein carboxyl methylase [Ge	98.76
COG2227	243	UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-	98.76
TIGR02085	374	meth_trns_rumB 23S rRNA (uracil-5-)-methyltransfer	98.75
cd02440	107	AdoMet_MTases S-adenosylmethionine-dependent methy	98.75
KOG0820	315	consensus Ribosomal RNA adenine dimethylase [RNA p	98.75
PLN02781	234	Probable caffeoyl-CoA O-methyltransferase	98.71
PRK05134	233	bifunctional 3-demethylubiquinone-9 3-methyltransf	98.7
TIGR00417	270	speE spermidine synthase. the SpeE subunit of sper	98.67
TIGR02143	353	trmA_only tRNA (uracil-5-)-methyltransferase. This	98.66
PRK14904	445	16S rRNA methyltransferase B; Provisional	98.65
KOG3191	209	consensus Predicted N6-DNA-methyltransferase [Tran	98.64
PLN02823	336	spermine synthase	98.63
PRK05031	362	tRNA (uracil-5-)-methyltransferase; Validated	98.62
PRK14903	431	16S rRNA methyltransferase B; Provisional	98.59
TIGR00095	189	RNA methyltransferase, RsmD family. This model rep	98.59
PF02390	195	Methyltransf_4: Putative methyltransferase ; Inter	98.59
TIGR00563	426	rsmB ribosomal RNA small subunit methyltransferase	98.58
COG2519	256	GCD14 tRNA(1-methyladenosine) methyltransferase an	98.58
TIGR00478	228	tly hemolysin TlyA family protein. Hemolysins are	98.56
PRK14901	434	16S rRNA methyltransferase B; Provisional	98.56
PRK11783	702	rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi	98.55
TIGR01983	224	UbiG ubiquinone biosynthesis O-methyltransferase.	98.54
PF01170	179	UPF0020: Putative RNA methylase family UPF0020; In	98.53
PF00398	262	RrnaAD: Ribosomal RNA adenine dimethylase; InterPr	98.53
PRK15128	396	23S rRNA m(5)C1962 methyltransferase; Provisional	98.51
COG0421	282	SpeE Spermidine synthase [Amino acid transport and	98.5
TIGR00446	264	nop2p NOL1/NOP2/sun family putative RNA methylase.	98.5
PRK13256	226	thiopurine S-methyltransferase; Reviewed	98.5
KOG1499	346	consensus Protein arginine N-methyltransferase PRM	98.49
KOG1500	517	consensus Protein arginine N-methyltransferase CAR	98.49
PLN02476	278	O-methyltransferase	98.46
COG0030	259	KsgA Dimethyladenosine transferase (rRNA methylati	98.46
PF05724	218	TPMT: Thiopurine S-methyltransferase (TPMT); Inter	98.46
PF08704	247	GCD14: tRNA methyltransferase complex GCD14 subuni	98.45
PF01596	205	Methyltransf_3: O-methyltransferase; InterPro: IPR	98.44
KOG2899	288	consensus Predicted methyltransferase [General fun	98.44
PRK00536	262	speE spermidine synthase; Provisional	98.43
PF05185	448	PRMT5: PRMT5 arginine-N-methyltransferase; InterPr	98.42
PF01564	246	Spermine_synth: Spermine/spermidine synthase; Inte	98.35
PF10294	173	Methyltransf_16: Putative methyltransferase; Inter	98.32
PF09445	163	Methyltransf_15: RNA cap guanine-N2 methyltransfer	98.31
PRK04338	382	N(2),N(2)-dimethylguanosine tRNA methyltransferase	98.31
TIGR01444	143	fkbM_fam methyltransferase, FkbM family. Members o	98.3
PRK11783	702	rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi	98.3
PF01739	196	CheR: CheR methyltransferase, SAM binding domain;	98.26
PF08003	315	Methyltransf_9: Protein of unknown function (DUF16	98.24
KOG3420	185	consensus Predicted RNA methylase [Translation, ri	98.23
COG4976	287	Predicted methyltransferase (contains TPR repeat)	98.23
PF13679	141	Methyltransf_32: Methyltransferase domain	98.21
COG4122	219	Predicted O-methyltransferase [General function pr	98.19
COG0220	227	Predicted S-adenosylmethionine-dependent methyltra	98.18
PF02475	200	Met_10: Met-10+ like-protein; InterPro: IPR003402	98.14
PRK11760	357	putative 23S rRNA C2498 ribose 2'-O-ribose methylt	98.12
KOG1661	237	consensus Protein-L-isoaspartate(D-aspartate) O-me	98.11
PF09243	274	Rsm22: Mitochondrial small ribosomal subunit Rsm22	98.1
COG1352	268	CheR Methylase of chemotaxis methyl-accepting prot	98.1
PLN02589	247	caffeoyl-CoA O-methyltransferase	98.07
COG3963	194	Phospholipid N-methyltransferase [Lipid metabolism	98.06
PF04816	205	DUF633: Family of unknown function (DUF633) ; Inte	98.05
COG4262	508	Predicted spermidine synthase with an N-terminal m	98.03
COG4076	252	Predicted RNA methylase [General function predicti	98.01
TIGR00006	305	S-adenosyl-methyltransferase MraW. Genetics paper	97.98
PRK01544	506	bifunctional N5-glutamine S-adenosyl-L-methionine-	97.96
KOG3010	261	consensus Methyltransferase [General function pred	97.96
PF02384	311	N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 T	97.89
PF12147	311	Methyltransf_20: Putative methyltransferase; Inter	97.89
PF07091	251	FmrO: Ribosomal RNA methyltransferase (FmrO); PDB:	97.81
COG0116	381	Predicted N6-adenine-specific DNA methylase [DNA r	97.78
KOG2187	534	consensus tRNA uracil-5-methyltransferase and rela	97.74
COG2265	432	TrmA SAM-dependent methyltransferases related to t	97.74
PF02527	184	GidB: rRNA small subunit methyltransferase G; Inte	97.71
PF03602	183	Cons_hypoth95: Conserved hypothetical protein 95;	97.7
PF06080	204	DUF938: Protein of unknown function (DUF938); Inte	97.69
PF05958	352	tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferas	97.68
TIGR02987	524	met_A_Alw26 type II restriction m6 adenine DNA met	97.68
KOG2915	314	consensus tRNA(1-methyladenosine) methyltransferas	97.67
KOG2361	264	consensus Predicted methyltransferase [General fun	97.65
PRK10611	287	chemotaxis methyltransferase CheR; Provisional	97.63
PF01795	310	Methyltransf_5: MraW methylase family; InterPro: I	97.63
PF07757	112	AdoMet_MTase: Predicted AdoMet-dependent methyltra	97.62
PF01728	181	FtsJ: FtsJ-like methyltransferase; InterPro: IPR00	97.59
COG0357	215	GidB Predicted S-adenosylmethionine-dependent meth	97.59
COG3897	218	Predicted methyltransferase [General function pred	97.55
KOG4300	252	consensus Predicted methyltransferase [General fun	97.53
TIGR00308	374	TRM1 tRNA(guanine-26,N2-N2) methyltransferase. Thi	97.53
KOG4058	199	consensus Uncharacterized conserved protein [Funct	97.51
COG0293	205	FtsJ 23S rRNA methylase [Translation, ribosomal st	97.44
COG2384	226	Predicted SAM-dependent methyltransferase [General	97.43
KOG2730	263	consensus Methylase [General function prediction o	97.34
KOG3115	249	consensus Methyltransferase-like protein [General	97.33
PF05219	265	DREV: DREV methyltransferase; InterPro: IPR007884	97.33
PRK10742	250	putative methyltransferase; Provisional	97.2
COG0275	314	Predicted S-adenosylmethionine-dependent methyltra	97.18
TIGR03439	319	methyl_EasF probable methyltransferase domain, Eas	97.15
COG0742	187	N6-adenine-specific methylase [DNA replication, re	97.14
PF04672	267	Methyltransf_19: S-adenosyl methyltransferase; Int	97.12
COG2521	287	Predicted archaeal methyltransferase [General func	97.09
COG1092	393	Predicted SAM-dependent methyltransferases [Genera	97.08
PF05971	299	Methyltransf_10: Protein of unknown function (DUF8	97.05
PF05148	219	Methyltransf_8: Hypothetical methyltransferase; In	96.99
PRK11933	470	yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF;	96.89
PF05891	218	Methyltransf_PK: AdoMet dependent proline di-methy	96.85
PF03141	506	Methyltransf_29: Putative S-adenosyl-L-methionine-	96.64
COG2520	341	Predicted methyltransferase [General function pred	96.63
PF03059	276	NAS: Nicotianamine synthase protein; InterPro: IPR	96.56
COG1565	370	Uncharacterized conserved protein [Function unknow	96.55
PF03291	331	Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971	96.39
KOG4589	232	consensus Cell division protein FtsJ [Cell cycle c	96.38
PF10672	286	Methyltrans_SAM: S-adenosylmethionine-dependent me	96.32
PF11968	219	DUF3321: Putative methyltransferase (DUF3321); Int	96.08
KOG1501	636	consensus Arginine N-methyltransferase [General fu	95.76
KOG1663	237	consensus O-methyltransferase [Secondary metabolit	95.74
PF13578	106	Methyltransf_24: Methyltransferase domain; PDB: 3S	95.59
KOG0822	649	consensus Protein kinase inhibitor [Cell cycle con	95.53
PLN02232	160	ubiquinone biosynthesis methyltransferase	95.53
PF04989	206	CmcI: Cephalosporin hydroxylase; InterPro: IPR0070	95.51
KOG2940	325	consensus Predicted methyltransferase [General fun	95.47
KOG1709	271	consensus Guanidinoacetate methyltransferase and r	95.45
PF05206	259	TRM13: Methyltransferase TRM13; InterPro: IPR00787	95.44
COG1041	347	Predicted DNA modification methylase [DNA replicat	95.41
COG0500	257	SmtA SAM-dependent methyltransferases [Secondary m	95.38
COG1189	245	Predicted rRNA methylase [Translation, ribosomal s	95.28
KOG2651	476	consensus rRNA adenine N-6-methyltransferase [RNA	95.19
PF01269	229	Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibr	95.16
KOG1331	293	consensus Predicted methyltransferase [General fun	95.03
COG5459	484	Predicted rRNA methylase [Translation, ribosomal s	94.91
KOG3045	325	consensus Predicted RNA methylase involved in rRNA	94.9
PF02636	252	Methyltransf_28: Putative S-adenosyl-L-methionine-	94.82
KOG3924	419	consensus Putative protein methyltransferase invol	94.81
PF11599	246	AviRa: RRNA methyltransferase AviRa; InterPro: IPR	94.61
PF01861	243	DUF43: Protein of unknown function DUF43; InterPro	94.36
KOG2793	248	consensus Putative N2,N2-dimethylguanosine tRNA me	94.13
cd00315	275	Cyt_C5_DNA_methylase Cytosine-C5 specific DNA meth	94.02
PF04445	234	SAM_MT: Putative SAM-dependent methyltransferase;	93.4
KOG1562	337	consensus Spermidine synthase [Amino acid transpor	93.38
PF01555	231	N6_N4_Mtase: DNA methylase; InterPro: IPR002941 Th	93.37
COG0144	355	Sun tRNA and rRNA cytosine-C5-methylases [Translat	93.34
COG1064	339	AdhP Zn-dependent alcohol dehydrogenases [General	92.72
PF04072	183	LCM: Leucine carboxyl methyltransferase; InterPro:	92.5
COG1889	231	NOP1 Fibrillarin-like rRNA methylase [Translation,	92.26
KOG1975	389	consensus mRNA cap methyltransferase [RNA processi	91.77
PF03686	127	UPF0146: Uncharacterised protein family (UPF0146);	91.74
KOG2918	335	consensus Carboxymethyl transferase [Posttranslati	91.69
PF02153	258	PDH: Prephenate dehydrogenase; InterPro: IPR003099	91.27
PF02254	116	TrkA_N: TrkA-N domain; InterPro: IPR003148 The reg	91.03
PF11312	315	DUF3115: Protein of unknown function (DUF3115); In	90.3
PF03514	374	GRAS: GRAS domain family; InterPro: IPR005202 Sequ	89.9
PF14314	675	Methyltrans_Mon: Virus-capping methyltransferase	89.86
KOG1098	780	consensus Putative SAM-dependent rRNA methyltransf	89.57
cd08283	386	FDH_like_1 Glutathione-dependent formaldehyde dehy	89.38
TIGR01470	205	cysG_Nterm siroheme synthase, N-terminal domain. T	89.23
COG1255	129	Uncharacterized protein conserved in archaea [Func	89.17
PF06690	252	DUF1188: Protein of unknown function (DUF1188); In	89.02
PRK11524	284	putative methyltransferase; Provisional	88.95
PF01189	283	Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR	88.6
PF05050	167	Methyltransf_21: Methyltransferase FkbM domain; In	88.56
PF12692	160	Methyltransf_17: S-adenosyl-L-methionine methyltra	88.55
KOG2782	303	consensus Putative SAM dependent methyltransferase	88.06
KOG2920	282	consensus Predicted methyltransferase [General fun	87.82
COG0286	489	HsdM Type I restriction-modification system methyl	87.41
PLN02668	386	indole-3-acetate carboxyl methyltransferase	87.39
PRK07502	307	cyclohexadienyl dehydrogenase; Validated	87.33
PF12242	78	Eno-Rase_NADH_b: NAD(P)H binding domain of trans-2	87.04
KOG2666	481	consensus UDP-glucose/GDP-mannose dehydrogenase [C	86.72
COG0287	279	TyrA Prephenate dehydrogenase [Amino acid transpor	86.64
KOG3201	201	consensus Uncharacterized conserved protein [Funct	86.54
PRK13699	227	putative methylase; Provisional	86.47
PRK06719	157	precorrin-2 dehydrogenase; Validated	86.36
KOG3987	288	consensus Uncharacterized conserved protein DREV/C	86.2
KOG0024	354	consensus Sorbitol dehydrogenase [Secondary metabo	86.08
PF13460	183	NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X	85.1
KOG1269	364	consensus SAM-dependent methyltransferases [Lipid	84.99
TIGR00027	260	mthyl_TIGR00027 methyltransferase, putative, TIGR0	84.43
PF03492	334	Methyltransf_7: SAM dependent carboxyl methyltrans	84.33
PRK07417	279	arogenate dehydrogenase; Reviewed	84.21
PHA01634	156	hypothetical protein	83.81
PRK05562	223	precorrin-2 dehydrogenase; Provisional	83.37
PRK09496	453	trkA potassium transporter peripheral membrane com	82.94
PRK06718	202	precorrin-2 dehydrogenase; Reviewed	82.91
COG0031	300	CysK Cysteine synthase [Amino acid transport and m	82.65
PRK04176	257	ribulose-1,5-biphosphate synthetase; Provisional	82.43
KOG2078	495	consensus tRNA modification enzyme [RNA processing	82.24
COG1063	350	Tdh Threonine dehydrogenase and related Zn-depende	82.19
cd02190	379	epsilon_tubulin The tubulin superfamily includes f	82.02
PRK09273	211	hypothetical protein; Provisional	81.03
PF06962	140	rRNA_methylase: Putative rRNA methylase; InterPro:	80.93
PRK09496	453	trkA potassium transporter peripheral membrane com	80.55
COG2933	358	Predicted SAM-dependent methyltransferase [General	80.39

>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=99.87  E-value=2.6e-22  Score=132.16  Aligned_cols=87  Identities=31%  Similarity=0.659  Sum_probs=75.3

Q ss_pred             CCcchhhhH-HHHHhhcccCCCCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeehHHHHHhCCCCCCeeEEEecCCCCC
Q 034578            1 MACTTKITM-KAFVSHYKVDGFNNIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDLQHVIATAPTHEGVSHVGGDMFDAI   79 (90)
Q Consensus         1 m~~~~~~~~-~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~p~~~~~a~~~~rv~~~~~d~~~~~   79 (90)
                      |+..++..+ +.+++.++   +++..+|||||||+|.++.++++++|+++++++|+|++++.+++.+|+++++||||+++
T Consensus        80 m~~~~~~~~~~~~~~~~d---~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dlp~v~~~~~~~~rv~~~~gd~f~~~  156 (241)
T PF00891_consen   80 MAEYSRLNAFDILLEAFD---FSGFKTVVDVGGGSGHFAIALARAYPNLRATVFDLPEVIEQAKEADRVEFVPGDFFDPL  156 (241)
T ss_dssp             HHHHHHHHHHHHHHHHST---TTTSSEEEEET-TTSHHHHHHHHHSTTSEEEEEE-HHHHCCHHHTTTEEEEES-TTTCC
T ss_pred             HHhhhhcchhhhhhcccc---ccCccEEEeccCcchHHHHHHHHHCCCCcceeeccHhhhhccccccccccccccHHhhh
Confidence            344555566 77788888   77889999999999999999999999999999999999999888999999999999989


Q ss_pred             CcccEEEeecC
Q 034578           80 PNADAVFMKVA   90 (90)
Q Consensus        80 p~~D~i~l~~v   90 (90)
                      |.+|+|+++||
T Consensus       157 P~~D~~~l~~v  167 (241)
T PF00891_consen  157 PVADVYLLRHV  167 (241)
T ss_dssp             SSESEEEEESS
T ss_pred             ccccceeeehh
Confidence            88999999987

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....

>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU

Probab=99.71  E-value=5.4e-17  Score=110.24  Aligned_cols=81  Identities=23%  Similarity=0.526  Sum_probs=69.2

Q ss_pred             hhHHHHHhhcccCCCCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeehHHHHHhCCC-------CCCeeEEEecCCC-C
Q 034578            7 ITMKAFVSHYKVDGFNNIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDLQHVIATAPT-------HEGVSHVGGDMFD-A   78 (90)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~p~~~~~a~~-------~~rv~~~~~d~~~-~   78 (90)
                      ...+.+++..+   +++..+|||||||+|.++..+++++|+++++++|+|.+++.+++       .+|++++.+|+++ +
T Consensus       136 ~~~~~l~~~~~---~~~~~~vlDiG~G~G~~~~~~~~~~p~~~~~~~D~~~~~~~a~~~~~~~gl~~rv~~~~~d~~~~~  212 (306)
T TIGR02716       136 FAIQLLLEEAK---LDGVKKMIDVGGGIGDISAAMLKHFPELDSTILNLPGAIDLVNENAAEKGVADRMRGIAVDIYKES  212 (306)
T ss_pred             hHHHHHHHHcC---CCCCCEEEEeCCchhHHHHHHHHHCCCCEEEEEecHHHHHHHHHHHHhCCccceEEEEecCccCCC
Confidence            34556667666   67788999999999999999999999999999999999887754       3689999999997 6


Q ss_pred             CCcccEEEeecC
Q 034578           79 IPNADAVFMKVA   90 (90)
Q Consensus        79 ~p~~D~i~l~~v   90 (90)
                      +|.+|+|+++++
T Consensus       213 ~~~~D~v~~~~~  224 (306)
T TIGR02716       213 YPEADAVLFCRI  224 (306)
T ss_pred             CCCCCEEEeEhh
Confidence            777999998874

Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.

>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A

Probab=99.61  E-value=2.5e-15  Score=88.03  Aligned_cols=66  Identities=23%  Similarity=0.428  Sum_probs=57.3

Q ss_pred             CCeEEEecCCchHHHHHHHHHCCCCeEEEeeh-HHHHHhCCC-------CCCeeEEEecC-CC-CC-CcccEEEeec
Q 034578           24 IRSMVDVGGGTGTVLAEIVKSYPHIKGINFDL-QHVIATAPT-------HEGVSHVGGDM-FD-AI-PNADAVFMKV   89 (90)
Q Consensus        24 ~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~-------~~rv~~~~~d~-~~-~~-p~~D~i~l~~   89 (90)
                      ..+|||+|||+|.++..+++++|..+++++|+ |.+++.+++       .+|++++.+|+ .. .. ++||+|++..
T Consensus         2 ~~~vLDlGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~~~   78 (112)
T PF12847_consen    2 GGRVLDLGCGTGRLSIALARLFPGARVVGVDISPEMLEIARERAAEEGLSDRITFVQGDAEFDPDFLEPFDLVICSG   78 (112)
T ss_dssp             TCEEEEETTTTSHHHHHHHHHHTTSEEEEEESSHHHHHHHHHHHHHTTTTTTEEEEESCCHGGTTTSSCEEEEEECS
T ss_pred             CCEEEEEcCcCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECccccCcccCCCCCEEEECC
Confidence            57899999999999999999999999999999 999988765       48999999999 33 33 3599999864

...

>KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only]

Probab=99.58  E-value=4.2e-15  Score=102.06  Aligned_cols=88  Identities=49%  Similarity=0.881  Sum_probs=79.6

Q ss_pred             CCcchhhhHHHHHhhcccCCCCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeehHHHHHhCCCC-CCeeEEEecCCCCC
Q 034578            1 MACTTKITMKAFVSHYKVDGFNNIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDLQHVIATAPTH-EGVSHVGGDMFDAI   79 (90)
Q Consensus         1 m~~~~~~~~~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~p~~~~~a~~~-~rv~~~~~d~~~~~   79 (90)
                      |...+....+.+++.+.  +|+.....||+|+|.|.++..++..||+++++.+|+|.+++.+... +.|+.+.||+|+..
T Consensus       157 m~~l~~~~~~~il~~~~--Gf~~v~~avDvGgGiG~v~k~ll~~fp~ik~infdlp~v~~~a~~~~~gV~~v~gdmfq~~  234 (342)
T KOG3178|consen  157 MSFLSTLVMKKILEVYT--GFKGVNVAVDVGGGIGRVLKNLLSKYPHIKGINFDLPFVLAAAPYLAPGVEHVAGDMFQDT  234 (342)
T ss_pred             HHHHHHHHHHhhhhhhc--ccccCceEEEcCCcHhHHHHHHHHhCCCCceeecCHHHHHhhhhhhcCCcceecccccccC
Confidence            34566777788888888  4888999999999999999999999999999999999999998876 78999999999999


Q ss_pred             CcccEEEeecC
Q 034578           80 PNADAVFMKVA   90 (90)
Q Consensus        80 p~~D~i~l~~v   90 (90)
                      |.+|+|++.||
T Consensus       235 P~~daI~mkWi  245 (342)
T KOG3178|consen  235 PKGDAIWMKWI  245 (342)
T ss_pred             CCcCeEEEEee
Confidence            99999999997

>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]

Probab=99.55  E-value=2e-14  Score=97.19  Aligned_cols=82  Identities=21%  Similarity=0.328  Sum_probs=66.9

Q ss_pred             cchhhhHHHHHhhcccCCCCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeeh-HHHHHhCCCC------CCeeEEEecC
Q 034578            3 CTTKITMKAFVSHYKVDGFNNIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDL-QHVIATAPTH------EGVSHVGGDM   75 (90)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~------~rv~~~~~d~   75 (90)
                      ..++.+++.++....+   ... +|+|+|||||++++.+++++|+++++++|+ |.+++.|+++      .|+.++.+|+
T Consensus        94 ~dTe~Lve~~l~~~~~---~~~-~ilDlGTGSG~iai~la~~~~~~~V~a~Dis~~Al~~A~~Na~~~~l~~~~~~~~dl  169 (280)
T COG2890          94 PDTELLVEAALALLLQ---LDK-RILDLGTGSGAIAIALAKEGPDAEVIAVDISPDALALARENAERNGLVRVLVVQSDL  169 (280)
T ss_pred             CchHHHHHHHHHhhhh---cCC-cEEEecCChHHHHHHHHhhCcCCeEEEEECCHHHHHHHHHHHHHcCCccEEEEeeec
Confidence            3566677777644442   222 899999999999999999999999999999 9999998762      5677888899


Q ss_pred             CCCCCc-ccEEEee
Q 034578           76 FDAIPN-ADAVFMK   88 (90)
Q Consensus        76 ~~~~p~-~D~i~l~   88 (90)
                      |+++++ ||+|+.+
T Consensus       170 f~~~~~~fDlIVsN  183 (280)
T COG2890         170 FEPLRGKFDLIVSN  183 (280)
T ss_pred             ccccCCceeEEEeC
Confidence            998765 9999876

>PRK14103 trans-aconitate 2-methyltransferase; Provisional

Probab=99.53  E-value=4.4e-14  Score=93.83  Aligned_cols=79  Identities=23%  Similarity=0.354  Sum_probs=66.2

Q ss_pred             hhHHHHHhhcccCCCCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeeh-HHHHHhCCCCCCeeEEEecCCCCCC--ccc
Q 034578            7 ITMKAFVSHYKVDGFNNIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDL-QHVIATAPTHEGVSHVGGDMFDAIP--NAD   83 (90)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~~rv~~~~~d~~~~~p--~~D   83 (90)
                      .....+++.++   ..+..+|||||||+|.++..+++++|+.+++++|+ |.+++.+++. +++++.+|+.+..+  .+|
T Consensus        16 ~~~~~ll~~l~---~~~~~~vLDlGcG~G~~~~~l~~~~p~~~v~gvD~s~~~~~~a~~~-~~~~~~~d~~~~~~~~~fD   91 (255)
T PRK14103         16 RPFYDLLARVG---AERARRVVDLGCGPGNLTRYLARRWPGAVIEALDSSPEMVAAARER-GVDARTGDVRDWKPKPDTD   91 (255)
T ss_pred             CHHHHHHHhCC---CCCCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHhc-CCcEEEcChhhCCCCCCce
Confidence            34567788777   55678999999999999999999999999999999 9999998764 58899999865322  399


Q ss_pred             EEEeec
Q 034578           84 AVFMKV   89 (90)
Q Consensus        84 ~i~l~~   89 (90)
                      +|+++.
T Consensus        92 ~v~~~~   97 (255)
T PRK14103         92 VVVSNA   97 (255)
T ss_pred             EEEEeh
Confidence            999875

>PRK01683 trans-aconitate 2-methyltransferase; Provisional

Probab=99.48  E-value=3.5e-13  Score=89.42  Aligned_cols=81  Identities=21%  Similarity=0.354  Sum_probs=67.7

Q ss_pred             hhhHHHHHhhcccCCCCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeeh-HHHHHhCCCC-CCeeEEEecCCCCCC--c
Q 034578            6 KITMKAFVSHYKVDGFNNIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDL-QHVIATAPTH-EGVSHVGGDMFDAIP--N   81 (90)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~-~rv~~~~~d~~~~~p--~   81 (90)
                      ...+..+++.++   ..+..+|||+|||+|.++..+++++|..+++++|+ |.+++.++++ ++++++.+|+.+..+  .
T Consensus        17 ~~~~~~ll~~~~---~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~i~~a~~~~~~~~~~~~d~~~~~~~~~   93 (258)
T PRK01683         17 TRPARDLLARVP---LENPRYVVDLGCGPGNSTELLVERWPAARITGIDSSPAMLAEARSRLPDCQFVEADIASWQPPQA   93 (258)
T ss_pred             hcHHHHHHhhCC---CcCCCEEEEEcccCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhCCCCeEEECchhccCCCCC
Confidence            345677777777   56678999999999999999999999999999999 9999998774 679999999876333  3


Q ss_pred             ccEEEeec
Q 034578           82 ADAVFMKV   89 (90)
Q Consensus        82 ~D~i~l~~   89 (90)
                      +|+|+.+.
T Consensus        94 fD~v~~~~  101 (258)
T PRK01683         94 LDLIFANA  101 (258)
T ss_pred             ccEEEEcc
Confidence            99998764

>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A

Probab=99.47  E-value=2.6e-13  Score=83.86  Aligned_cols=67  Identities=24%  Similarity=0.445  Sum_probs=57.1

Q ss_pred             CCCeEEEecCCchHHHHHHH-HHCCCCeEEEeeh-HHHHHhCCC------CCCeeEEEecCCC-C--CC-cccEEEeec
Q 034578           23 NIRSMVDVGGGTGTVLAEIV-KSYPHIKGINFDL-QHVIATAPT------HEGVSHVGGDMFD-A--IP-NADAVFMKV   89 (90)
Q Consensus        23 ~~~~vlDvG~G~G~~~~~l~-~~~p~~~~~~~D~-p~~~~~a~~------~~rv~~~~~d~~~-~--~p-~~D~i~l~~   89 (90)
                      +..+|||+|||+|.++..++ +.+|..+++++|+ |.+++.|++      .++++|..+|+.+ +  ++ .+|+|+...
T Consensus         3 ~~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~~~~~~~~~ni~~~~~d~~~l~~~~~~~~D~I~~~~   81 (152)
T PF13847_consen    3 SNKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAKKRAKELGLDNIEFIQGDIEDLPQELEEKFDIIISNG   81 (152)
T ss_dssp             TTSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHHHHHTTSTTEEEEESBTTCGCGCSSTTEEEEEEES
T ss_pred             CCCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhhcccccccccccceEEeehhccccccCCCeeEEEEcC
Confidence            46799999999999999999 5589999999999 999999876      2689999999998 4  33 499999864

...

>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]

Probab=99.47  E-value=3.2e-13  Score=89.44  Aligned_cols=67  Identities=25%  Similarity=0.352  Sum_probs=60.3

Q ss_pred             CCCeEEEecCCchHHHHHHHHHCCCCeEEEeeh-HHHHHhCCCC------CCeeEEEecCCC-CCCc--ccEEEeec
Q 034578           23 NIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDL-QHVIATAPTH------EGVSHVGGDMFD-AIPN--ADAVFMKV   89 (90)
Q Consensus        23 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~------~rv~~~~~d~~~-~~p~--~D~i~l~~   89 (90)
                      +..+|||||||||.++..+++..+..+++++|+ +.|++.+++.      ..++|+.+|..+ |+|+  +|+|+++.
T Consensus        51 ~g~~vLDva~GTGd~a~~~~k~~g~g~v~~~D~s~~ML~~a~~k~~~~~~~~i~fv~~dAe~LPf~D~sFD~vt~~f  127 (238)
T COG2226          51 PGDKVLDVACGTGDMALLLAKSVGTGEVVGLDISESMLEVAREKLKKKGVQNVEFVVGDAENLPFPDNSFDAVTISF  127 (238)
T ss_pred             CCCEEEEecCCccHHHHHHHHhcCCceEEEEECCHHHHHHHHHHhhccCccceEEEEechhhCCCCCCccCEEEeee
Confidence            568999999999999999999999999999999 9999999862      239999999988 8886  99999874

>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]

Probab=99.46  E-value=7e-14  Score=91.26  Aligned_cols=77  Identities=18%  Similarity=0.329  Sum_probs=66.9

Q ss_pred             HHHHHhhcccCCCCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeeh-HHHHHhCCCC-CCeeEEEecCCCCCC--cccE
Q 034578            9 MKAFVSHYKVDGFNNIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDL-QHVIATAPTH-EGVSHVGGDMFDAIP--NADA   84 (90)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~-~rv~~~~~d~~~~~p--~~D~   84 (90)
                      +..++...+   .....+|+|+|||+|.-...|+++||.++++++|. |.|++.|++. ++++|..+|..+.-|  +.|+
T Consensus        19 a~dLla~Vp---~~~~~~v~DLGCGpGnsTelL~~RwP~A~i~GiDsS~~Mla~Aa~rlp~~~f~~aDl~~w~p~~~~dl   95 (257)
T COG4106          19 ARDLLARVP---LERPRRVVDLGCGPGNSTELLARRWPDAVITGIDSSPAMLAKAAQRLPDATFEEADLRTWKPEQPTDL   95 (257)
T ss_pred             HHHHHhhCC---ccccceeeecCCCCCHHHHHHHHhCCCCeEeeccCCHHHHHHHHHhCCCCceecccHhhcCCCCccch
Confidence            456777788   77889999999999999999999999999999999 9999999764 889999999988555  3788


Q ss_pred             EEee
Q 034578           85 VFMK   88 (90)
Q Consensus        85 i~l~   88 (90)
                      ++.+
T Consensus        96 lfaN   99 (257)
T COG4106          96 LFAN   99 (257)
T ss_pred             hhhh
Confidence            7654

>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase

Probab=99.46  E-value=5.2e-13  Score=86.63  Aligned_cols=68  Identities=21%  Similarity=0.381  Sum_probs=59.3

Q ss_pred             CCCCeEEEecCCchHHHHHHHHHCCCCeEEEeeh-HHHHHhCCC-CCCeeEEEecCCCCCCc--ccEEEeec
Q 034578           22 NNIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDL-QHVIATAPT-HEGVSHVGGDMFDAIPN--ADAVFMKV   89 (90)
Q Consensus        22 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~-~~rv~~~~~d~~~~~p~--~D~i~l~~   89 (90)
                      .+..+|||+|||+|.++..+++..|..+++++|+ |.+++.|++ .+++++..+|+.++.+.  +|+|+++.
T Consensus        42 ~~~~~VLDiGCG~G~~~~~L~~~~~~~~v~giDiS~~~l~~A~~~~~~~~~~~~d~~~~~~~~sfD~V~~~~  113 (204)
T TIGR03587        42 PKIASILELGANIGMNLAALKRLLPFKHIYGVEINEYAVEKAKAYLPNINIIQGSLFDPFKDNFFDLVLTKG  113 (204)
T ss_pred             CCCCcEEEEecCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHhhCCCCcEEEeeccCCCCCCCEEEEEECC
Confidence            3567899999999999999999889999999999 999999987 46788999999886543  99999765

Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme

>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated

Probab=99.45  E-value=9.6e-13  Score=83.84  Aligned_cols=74  Identities=22%  Similarity=0.435  Sum_probs=61.1

Q ss_pred             HHhhcccCCCCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeeh-HHHHHhCCC------CCCeeEEEecCCCCCCc-cc
Q 034578           12 FVSHYKVDGFNNIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDL-QHVIATAPT------HEGVSHVGGDMFDAIPN-AD   83 (90)
Q Consensus        12 ~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~------~~rv~~~~~d~~~~~p~-~D   83 (90)
                      +++.++   ..+..+|||+|||+|.++..+++++|+.+++++|+ |.+++.+++      ..+++++.+|....++. +|
T Consensus        23 ~~~~l~---~~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~n~~~~~~~~i~~~~~d~~~~~~~~~D   99 (187)
T PRK08287         23 ALSKLE---LHRAKHLIDVGAGTGSVSIEAALQFPSLQVTAIERNPDALRLIKENRQRFGCGNIDIIPGEAPIELPGKAD   99 (187)
T ss_pred             HHHhcC---CCCCCEEEEECCcCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCCCeEEEecCchhhcCcCCC
Confidence            345555   55678999999999999999999999999999999 999888865      15789999998655554 99


Q ss_pred             EEEee
Q 034578           84 AVFMK   88 (90)
Q Consensus        84 ~i~l~   88 (90)
                      +|++.
T Consensus       100 ~v~~~  104 (187)
T PRK08287        100 AIFIG  104 (187)
T ss_pred             EEEEC
Confidence            99875

>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases

Probab=99.44  E-value=2.4e-13  Score=85.79  Aligned_cols=66  Identities=26%  Similarity=0.440  Sum_probs=57.6

Q ss_pred             CCCeEEEecCCchHHHHHHHHHCCCCeEEEeeh-HHHHHhCCCC------CCeeEEEecCCCCCC-c-ccEEEee
Q 034578           23 NIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDL-QHVIATAPTH------EGVSHVGGDMFDAIP-N-ADAVFMK   88 (90)
Q Consensus        23 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~------~rv~~~~~d~~~~~p-~-~D~i~l~   88 (90)
                      ...++||+|||+|.++..+++++|+.+++++|+ |.+++.++++      ++++++..|+++.++ . +|+|+++
T Consensus        31 ~~~~vLDlG~G~G~i~~~la~~~~~~~v~~vDi~~~a~~~a~~n~~~n~~~~v~~~~~d~~~~~~~~~fD~Iv~N  105 (170)
T PF05175_consen   31 KGGRVLDLGCGSGVISLALAKRGPDAKVTAVDINPDALELAKRNAERNGLENVEVVQSDLFEALPDGKFDLIVSN  105 (170)
T ss_dssp             TTCEEEEETSTTSHHHHHHHHTSTCEEEEEEESBHHHHHHHHHHHHHTTCTTEEEEESSTTTTCCTTCEEEEEE-
T ss_pred             cCCeEEEecCChHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHhcCccccccccccccccccccceeEEEEc
Confidence            467899999999999999999999999999999 9999988761      339999999999765 3 9999985

; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....

>TIGR00536 hemK_fam HemK family putative methylases

Probab=99.41  E-value=1.6e-12  Score=87.79  Aligned_cols=82  Identities=18%  Similarity=0.385  Sum_probs=65.1

Q ss_pred             hhhhHHHHHhhcccCCCCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeeh-HHHHHhCCCC-------CCeeEEEecCC
Q 034578            5 TKITMKAFVSHYKVDGFNNIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDL-QHVIATAPTH-------EGVSHVGGDMF   76 (90)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~-------~rv~~~~~d~~   76 (90)
                      ++.+.+.+++.+..  ..+..+|||+|||+|.++..+++.+|+.+++++|+ +.+++.|+++       .+++++.+|++
T Consensus        98 te~lv~~~l~~~~~--~~~~~~vLDlG~GsG~i~l~la~~~~~~~v~avDis~~al~~a~~n~~~~~~~~~v~~~~~d~~  175 (284)
T TIGR00536        98 TEELVEKALASLIS--QNPILHILDLGTGSGCIALALAYEFPNAEVIAVDISPDALAVAEENAEKNQLEHRVEFIQSNLF  175 (284)
T ss_pred             cHHHHHHHHHHhhh--cCCCCEEEEEeccHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchh
Confidence            45566666655431  22226899999999999999999999999999999 9999888762       46999999999


Q ss_pred             CCCC--cccEEEee
Q 034578           77 DAIP--NADAVFMK   88 (90)
Q Consensus        77 ~~~p--~~D~i~l~   88 (90)
                      ++++  .+|+|+.+
T Consensus       176 ~~~~~~~fDlIvsN  189 (284)
T TIGR00536       176 EPLAGQKIDIIVSN  189 (284)
T ss_pred             ccCcCCCccEEEEC
Confidence            8765  39999875

The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.

>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific

Probab=99.40  E-value=2.3e-12  Score=87.25  Aligned_cols=66  Identities=20%  Similarity=0.435  Sum_probs=58.0

Q ss_pred             CCCeEEEecCCchHHHHHHHHHCCCCeEEEeeh-HHHHHhCCCC-------CCeeEEEecCCCCCCc--ccEEEee
Q 034578           23 NIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDL-QHVIATAPTH-------EGVSHVGGDMFDAIPN--ADAVFMK   88 (90)
Q Consensus        23 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~-------~rv~~~~~d~~~~~p~--~D~i~l~   88 (90)
                      +..+|||+|||+|.++..+++++|+.+++++|+ +.+++.|+++       ++++++.+|++++++.  +|+|+++
T Consensus       121 ~~~~vLDlG~GsG~i~~~la~~~~~~~v~avDis~~al~~A~~n~~~~~~~~~i~~~~~D~~~~~~~~~fD~Iv~N  196 (284)
T TIGR03533       121 PVKRILDLCTGSGCIAIACAYAFPEAEVDAVDISPDALAVAEINIERHGLEDRVTLIQSDLFAALPGRKYDLIVSN  196 (284)
T ss_pred             CCCEEEEEeCchhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhhccCCCCccEEEEC
Confidence            457899999999999999999999999999999 9999988752       5799999999886653  8999974

Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.

>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional

Probab=99.39  E-value=2e-12  Score=90.58  Aligned_cols=77  Identities=18%  Similarity=0.301  Sum_probs=62.9

Q ss_pred             HHHHHhhcccCCCCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeeh-HHHHHhCCCC---------CCeeEEEecCCCC
Q 034578            9 MKAFVSHYKVDGFNNIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDL-QHVIATAPTH---------EGVSHVGGDMFDA   78 (90)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~---------~rv~~~~~d~~~~   78 (90)
                      .+-+++.++   .....+|||+|||+|.++..+++++|+.+++++|. +.+++.++++         .+++++.+|.++.
T Consensus       217 trllL~~lp---~~~~~~VLDLGCGtGvi~i~la~~~P~~~V~~vD~S~~Av~~A~~N~~~n~~~~~~~v~~~~~D~l~~  293 (378)
T PRK15001        217 ARFFMQHLP---ENLEGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALSG  293 (378)
T ss_pred             HHHHHHhCC---cccCCeEEEEeccccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCcccCceEEEEEcccccc
Confidence            344666676   23346999999999999999999999999999999 8999888751         3789999999886


Q ss_pred             CC--cccEEEee
Q 034578           79 IP--NADAVFMK   88 (90)
Q Consensus        79 ~p--~~D~i~l~   88 (90)
                      ++  .||+|+++
T Consensus       294 ~~~~~fDlIlsN  305 (378)
T PRK15001        294 VEPFRFNAVLCN  305 (378)
T ss_pred             CCCCCEEEEEEC
Confidence            53  39999985

>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional

Probab=99.37  E-value=3e-12  Score=90.49  Aligned_cols=80  Identities=21%  Similarity=0.319  Sum_probs=64.7

Q ss_pred             chhhhHHHHHhhcccCCCCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeeh-HHHHHhCCCC-----CCeeEEEecCCC
Q 034578            4 TTKITMKAFVSHYKVDGFNNIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDL-QHVIATAPTH-----EGVSHVGGDMFD   77 (90)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~-----~rv~~~~~d~~~   77 (90)
                      .++.+++.+++.++     +..++||+|||+|.++..+++++|..+++++|+ |.+++.++++     .+++++.+|+++
T Consensus       237 eTE~LVe~aL~~l~-----~~~rVLDLGcGSG~IaiaLA~~~p~a~VtAVDiS~~ALe~AreNa~~~g~rV~fi~gDl~e  311 (423)
T PRK14966        237 ETEHLVEAVLARLP-----ENGRVWDLGTGSGAVAVTVALERPDAFVRASDISPPALETARKNAADLGARVEFAHGSWFD  311 (423)
T ss_pred             cHHHHHHHhhhccC-----CCCEEEEEeChhhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCcEEEEEcchhc
Confidence            34556666665554     346899999999999999999999999999999 9999988762     479999999987


Q ss_pred             C-CC---cccEEEee
Q 034578           78 A-IP---NADAVFMK   88 (90)
Q Consensus        78 ~-~p---~~D~i~l~   88 (90)
                      . .+   .+|+|+++
T Consensus       312 ~~l~~~~~FDLIVSN  326 (423)
T PRK14966        312 TDMPSEGKWDIIVSN  326 (423)
T ss_pred             cccccCCCccEEEEC
Confidence            3 32   28999875

>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase

Probab=99.37  E-value=4.2e-12  Score=82.91  Aligned_cols=77  Identities=18%  Similarity=0.251  Sum_probs=62.1

Q ss_pred             HHHHhhcccCCCCCCCeEEEecCCchHHHHHHHHHC-CCCeEEEeeh-HHHHHhCCC------CCCeeEEEecCCC-CCC
Q 034578           10 KAFVSHYKVDGFNNIRSMVDVGGGTGTVLAEIVKSY-PHIKGINFDL-QHVIATAPT------HEGVSHVGGDMFD-AIP   80 (90)
Q Consensus        10 ~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~-p~~~~~~~D~-p~~~~~a~~------~~rv~~~~~d~~~-~~p   80 (90)
                      +.+++.++   ..+..+|||+|||+|.++..+++.+ |..+++++|+ |.+++.+++      .++++++.+|..+ +++
T Consensus        35 ~~~l~~l~---~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~  111 (231)
T TIGR02752        35 KDTMKRMN---VQAGTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVKDAGLHNVELVHGNAMELPFD  111 (231)
T ss_pred             HHHHHhcC---CCCCCEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHhcCCCceEEEEechhcCCCC
Confidence            45566665   5566899999999999999999986 6789999999 999887764      2579999999977 454


Q ss_pred             c--ccEEEeec
Q 034578           81 N--ADAVFMKV   89 (90)
Q Consensus        81 ~--~D~i~l~~   89 (90)
                      .  +|+|++..
T Consensus       112 ~~~fD~V~~~~  122 (231)
T TIGR02752       112 DNSFDYVTIGF  122 (231)
T ss_pred             CCCccEEEEec
Confidence            3  89998753

MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.

>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []

Probab=99.37  E-value=1.5e-12  Score=86.12  Aligned_cols=69  Identities=28%  Similarity=0.411  Sum_probs=50.7

Q ss_pred             CCCCCeEEEecCCchHHHHHHHHHC-CCCeEEEeeh-HHHHHhCCC------CCCeeEEEecCCC-CCCc--ccEEEeec
Q 034578           21 FNNIRSMVDVGGGTGTVLAEIVKSY-PHIKGINFDL-QHVIATAPT------HEGVSHVGGDMFD-AIPN--ADAVFMKV   89 (90)
Q Consensus        21 ~~~~~~vlDvG~G~G~~~~~l~~~~-p~~~~~~~D~-p~~~~~a~~------~~rv~~~~~d~~~-~~p~--~D~i~l~~   89 (90)
                      ..+..+|||+|||||.++..++++. |+.+++++|+ +.|++.|++      ..+++++.+|..+ ++|+  +|+|+++.
T Consensus        45 ~~~g~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~ML~~a~~k~~~~~~~~i~~v~~da~~lp~~d~sfD~v~~~f  124 (233)
T PF01209_consen   45 LRPGDRVLDVACGTGDVTRELARRVGPNGKVVGVDISPGMLEVARKKLKREGLQNIEFVQGDAEDLPFPDNSFDAVTCSF  124 (233)
T ss_dssp             --S--EEEEET-TTSHHHHHHGGGSS---EEEEEES-HHHHHHHHHHHHHTT--SEEEEE-BTTB--S-TT-EEEEEEES
T ss_pred             CCCCCEEEEeCCChHHHHHHHHHHCCCccEEEEecCCHHHHHHHHHHHHhhCCCCeeEEEcCHHHhcCCCCceeEEEHHh
Confidence            3456799999999999999999885 6789999999 999999875      2589999999988 7765  99999874

Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.

>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional

Probab=99.37  E-value=3.5e-12  Score=87.23  Aligned_cols=64  Identities=20%  Similarity=0.423  Sum_probs=56.9

Q ss_pred             CeEEEecCCchHHHHHHHHHCCCCeEEEeeh-HHHHHhCCCC-------CCeeEEEecCCCCCC--cccEEEee
Q 034578           25 RSMVDVGGGTGTVLAEIVKSYPHIKGINFDL-QHVIATAPTH-------EGVSHVGGDMFDAIP--NADAVFMK   88 (90)
Q Consensus        25 ~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~-------~rv~~~~~d~~~~~p--~~D~i~l~   88 (90)
                      .+|||+|||+|.++..+++.+|+.+++++|+ |.+++.|+++       ++++++.+|+++.+|  .+|+|+++
T Consensus       135 ~~VLDlG~GsG~iai~la~~~p~~~V~avDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~l~~~~fDlIvsN  208 (307)
T PRK11805        135 TRILDLCTGSGCIAIACAYAFPDAEVDAVDISPDALAVAEINIERHGLEDRVTLIESDLFAALPGRRYDLIVSN  208 (307)
T ss_pred             CEEEEEechhhHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCCcEEEEECchhhhCCCCCccEEEEC
Confidence            6899999999999999999999999999999 9999988752       479999999988665  39999975

>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed

Probab=99.36  E-value=4.7e-12  Score=81.28  Aligned_cols=67  Identities=22%  Similarity=0.203  Sum_probs=56.8

Q ss_pred             CCCCeEEEecCCchHHHHHHHHHCCCCeEEEeeh-HHHHHhCCC------CCCeeEEEecCCC-CCC-cccEEEee
Q 034578           22 NNIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDL-QHVIATAPT------HEGVSHVGGDMFD-AIP-NADAVFMK   88 (90)
Q Consensus        22 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~------~~rv~~~~~d~~~-~~p-~~D~i~l~   88 (90)
                      ++..+|||+|||+|.++..+++++|..+++++|. +.+++.+++      .++++++.+|..+ +.. .+|+|+++
T Consensus        44 ~~g~~VLDiGcGtG~~al~la~~~~~~~V~giD~s~~~l~~A~~~~~~~~l~~i~~~~~d~~~~~~~~~fDlV~~~  119 (187)
T PRK00107         44 PGGERVLDVGSGAGFPGIPLAIARPELKVTLVDSLGKKIAFLREVAAELGLKNVTVVHGRAEEFGQEEKFDVVTSR  119 (187)
T ss_pred             CCCCeEEEEcCCCCHHHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHcCCCCEEEEeccHhhCCCCCCccEEEEc
Confidence            3468999999999999999999999999999999 999988765      2459999999977 333 39999975

>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional

Probab=99.36  E-value=2e-12  Score=85.74  Aligned_cols=66  Identities=24%  Similarity=0.288  Sum_probs=56.4

Q ss_pred             CCCeEEEecCCchHHHHHHHHH--CCCCeEEEeeh-HHHHHhCCC-------CCCeeEEEecCCC-CCCcccEEEee
Q 034578           23 NIRSMVDVGGGTGTVLAEIVKS--YPHIKGINFDL-QHVIATAPT-------HEGVSHVGGDMFD-AIPNADAVFMK   88 (90)
Q Consensus        23 ~~~~vlDvG~G~G~~~~~l~~~--~p~~~~~~~D~-p~~~~~a~~-------~~rv~~~~~d~~~-~~p~~D~i~l~   88 (90)
                      +..+|||||||+|.++..+++.  +|+.+++++|+ |.|++.|++       ..+++++.+|+.+ +.+.+|+++++
T Consensus        56 ~~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~~~~~~~v~~~~~d~~~~~~~~~D~vv~~  132 (247)
T PRK15451         56 PGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIAIENASMVVLN  132 (247)
T ss_pred             CCCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEeCChhhCCCCCCCEEehh
Confidence            4578999999999999999884  68999999999 999999875       2479999999987 55668998865

>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]

Probab=99.35  E-value=5.3e-12  Score=85.75  Aligned_cols=76  Identities=14%  Similarity=0.256  Sum_probs=63.4

Q ss_pred             HHHHhhcccCCCCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeeh-HHHHHhCCCC------CCeeEEEecCCCCCCc-
Q 034578           10 KAFVSHYKVDGFNNIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDL-QHVIATAPTH------EGVSHVGGDMFDAIPN-   81 (90)
Q Consensus        10 ~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~------~rv~~~~~d~~~~~p~-   81 (90)
                      +-+++.++   .....+|+|+|||.|.+++.+++.+|+.+++.+|. ..+++.++++      ++.++...|.+++.++ 
T Consensus       148 ~lLl~~l~---~~~~~~vlDlGCG~Gvlg~~la~~~p~~~vtmvDvn~~Av~~ar~Nl~~N~~~~~~v~~s~~~~~v~~k  224 (300)
T COG2813         148 RLLLETLP---PDLGGKVLDLGCGYGVLGLVLAKKSPQAKLTLVDVNARAVESARKNLAANGVENTEVWASNLYEPVEGK  224 (300)
T ss_pred             HHHHHhCC---ccCCCcEEEeCCCccHHHHHHHHhCCCCeEEEEecCHHHHHHHHHhHHHcCCCccEEEEeccccccccc
Confidence            45667777   34445999999999999999999999999999999 8899999873      3336788999998766 


Q ss_pred             ccEEEee
Q 034578           82 ADAVFMK   88 (90)
Q Consensus        82 ~D~i~l~   88 (90)
                      ||+|+++
T Consensus       225 fd~IisN  231 (300)
T COG2813         225 FDLIISN  231 (300)
T ss_pred             ccEEEeC
Confidence            9999986

>PLN02233 ubiquinone biosynthesis methyltransferase

Probab=99.35  E-value=7.5e-12  Score=83.76  Aligned_cols=69  Identities=19%  Similarity=0.261  Sum_probs=57.7

Q ss_pred             CCCCCeEEEecCCchHHHHHHHHHC-CCCeEEEeeh-HHHHHhCCC---------CCCeeEEEecCCC-CCCc--ccEEE
Q 034578           21 FNNIRSMVDVGGGTGTVLAEIVKSY-PHIKGINFDL-QHVIATAPT---------HEGVSHVGGDMFD-AIPN--ADAVF   86 (90)
Q Consensus        21 ~~~~~~vlDvG~G~G~~~~~l~~~~-p~~~~~~~D~-p~~~~~a~~---------~~rv~~~~~d~~~-~~p~--~D~i~   86 (90)
                      ..+..+|||+|||+|.++..+++++ |..+++++|+ +.|++.|++         .++++++.+|..+ ++++  +|+|+
T Consensus        71 ~~~~~~VLDlGcGtG~~~~~la~~~~~~~~V~gvD~S~~ml~~A~~r~~~~~~~~~~~i~~~~~d~~~lp~~~~sfD~V~  150 (261)
T PLN02233         71 AKMGDRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSSEQLAVAASRQELKAKSCYKNIEWIEGDATDLPFDDCYFDAIT  150 (261)
T ss_pred             CCCCCEEEEECCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhhhhccCCCeEEEEcccccCCCCCCCEeEEE
Confidence            4456799999999999999999885 6789999999 999998854         2479999999977 6664  99998


Q ss_pred             eec
Q 034578           87 MKV   89 (90)
Q Consensus        87 l~~   89 (90)
                      ++.
T Consensus       151 ~~~  153 (261)
T PLN02233        151 MGY  153 (261)
T ss_pred             Eec
Confidence            864

>PLN02244 tocopherol O-methyltransferase

Probab=99.35  E-value=7.7e-12  Score=86.45  Aligned_cols=66  Identities=23%  Similarity=0.283  Sum_probs=55.9

Q ss_pred             CCCCeEEEecCCchHHHHHHHHHCCCCeEEEeeh-HHHHHhCCC-------CCCeeEEEecCCC-CCCc--ccEEEee
Q 034578           22 NNIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDL-QHVIATAPT-------HEGVSHVGGDMFD-AIPN--ADAVFMK   88 (90)
Q Consensus        22 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~-------~~rv~~~~~d~~~-~~p~--~D~i~l~   88 (90)
                      .+..+|||||||+|.++..+++++ +.+++++|+ |.+++.+++       .++++++.+|+.+ +++.  ||+|+..
T Consensus       117 ~~~~~VLDiGCG~G~~~~~La~~~-g~~v~gvD~s~~~i~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~FD~V~s~  193 (340)
T PLN02244        117 KRPKRIVDVGCGIGGSSRYLARKY-GANVKGITLSPVQAARANALAAAQGLSDKVSFQVADALNQPFEDGQFDLVWSM  193 (340)
T ss_pred             CCCCeEEEecCCCCHHHHHHHHhc-CCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcCcccCCCCCCCccEEEEC
Confidence            456799999999999999999988 789999999 999887764       2579999999987 5553  9999874

>TIGR00740 methyltransferase, putative

Probab=99.34  E-value=4.4e-12  Score=83.51  Aligned_cols=67  Identities=21%  Similarity=0.280  Sum_probs=56.8

Q ss_pred             CCCeEEEecCCchHHHHHHHHHC--CCCeEEEeeh-HHHHHhCCC-------CCCeeEEEecCCC-CCCcccEEEeec
Q 034578           23 NIRSMVDVGGGTGTVLAEIVKSY--PHIKGINFDL-QHVIATAPT-------HEGVSHVGGDMFD-AIPNADAVFMKV   89 (90)
Q Consensus        23 ~~~~vlDvG~G~G~~~~~l~~~~--p~~~~~~~D~-p~~~~~a~~-------~~rv~~~~~d~~~-~~p~~D~i~l~~   89 (90)
                      +..+|||+|||+|.++..+++++  |+.+++++|+ |.|++.|++       ..+++++.+|+.+ +++.+|+++++.
T Consensus        53 ~~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~d~v~~~~  130 (239)
T TIGR00740        53 PDSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHVEIKNASMVILNF  130 (239)
T ss_pred             CCCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECChhhCCCCCCCEEeeec
Confidence            45789999999999999999974  7899999999 999988865       2478999999987 566689887653

A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.

>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]

Probab=99.34  E-value=7e-12  Score=80.15  Aligned_cols=73  Identities=23%  Similarity=0.383  Sum_probs=62.4

Q ss_pred             HhhcccCCCCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeeh-HHHHHhCCC------CCCeeEEEecCCCC---CCcc
Q 034578           13 VSHYKVDGFNNIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDL-QHVIATAPT------HEGVSHVGGDMFDA---IPNA   82 (90)
Q Consensus        13 ~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~------~~rv~~~~~d~~~~---~p~~   82 (90)
                      +..+.   +.+..+++|||||||+++++++..+|..+++++|. +++++..++      -++++++.||..+.   +|.+
T Consensus        27 ls~L~---~~~g~~l~DIGaGtGsi~iE~a~~~p~~~v~AIe~~~~a~~~~~~N~~~fg~~n~~vv~g~Ap~~L~~~~~~  103 (187)
T COG2242          27 LSKLR---PRPGDRLWDIGAGTGSITIEWALAGPSGRVIAIERDEEALELIERNAARFGVDNLEVVEGDAPEALPDLPSP  103 (187)
T ss_pred             HHhhC---CCCCCEEEEeCCCccHHHHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCCCcEEEEeccchHhhcCCCCC
Confidence            45555   67788999999999999999999999999999998 888887765      38999999998873   3458


Q ss_pred             cEEEee
Q 034578           83 DAVFMK   88 (90)
Q Consensus        83 D~i~l~   88 (90)
                      |.|++.
T Consensus       104 daiFIG  109 (187)
T COG2242         104 DAIFIG  109 (187)
T ss_pred             CEEEEC
Confidence            999874

>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit

Probab=99.34  E-value=1.4e-11  Score=72.85  Aligned_cols=80  Identities=16%  Similarity=0.249  Sum_probs=62.7

Q ss_pred             hhhHHHHHhhcccCCCCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeeh-HHHHHhCCC------CCCeeEEEecCCC-
Q 034578            6 KITMKAFVSHYKVDGFNNIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDL-QHVIATAPT------HEGVSHVGGDMFD-   77 (90)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~------~~rv~~~~~d~~~-   77 (90)
                      +.+...+++.+.   .....+++|+|||+|.++..+++++|+.+++++|+ +.+++.+++      ..+++++.+|... 
T Consensus         5 ~~~~~~~~~~~~---~~~~~~vldlG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~   81 (124)
T TIGR02469         5 REVRALTLSKLR---LRPGDVLWDIGAGSGSITIEAARLVPNGRVYAIERNPEALRLIERNARRFGVSNIVIVEGDAPEA   81 (124)
T ss_pred             HHHHHHHHHHcC---CCCCCEEEEeCCCCCHHHHHHHHHCCCceEEEEcCCHHHHHHHHHHHHHhCCCceEEEecccccc
Confidence            344555666666   44567999999999999999999999999999999 888887764      2578999898764 


Q ss_pred             --CCC-cccEEEee
Q 034578           78 --AIP-NADAVFMK   88 (90)
Q Consensus        78 --~~p-~~D~i~l~   88 (90)
                        ..+ .+|.|++.
T Consensus        82 ~~~~~~~~D~v~~~   95 (124)
T TIGR02469        82 LEDSLPEPDRVFIG   95 (124)
T ss_pred             ChhhcCCCCEEEEC
Confidence              222 49999875

This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.

>TIGR02072 BioC biotin biosynthesis protein BioC

Probab=99.34  E-value=4.7e-12  Score=82.23  Aligned_cols=86  Identities=24%  Similarity=0.391  Sum_probs=65.9

Q ss_pred             chhhhHHHHHhhcccCCCCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeeh-HHHHHhCCCC--CCeeEEEecCCC-CC
Q 034578            4 TTKITMKAFVSHYKVDGFNNIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDL-QHVIATAPTH--EGVSHVGGDMFD-AI   79 (90)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~--~rv~~~~~d~~~-~~   79 (90)
                      .++..+..+++.+.........+|||+|||+|.++..+++..|..+++++|+ |.+++.+++.  ++++++.+|+.+ ++
T Consensus        15 ~q~~~~~~l~~~~~~~~~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~d~~~~~~   94 (240)
T TIGR02072        15 IQREMAKRLLALLKEKGIFIPASVLDIGCGTGYLTRALLKRFPQAEFIALDISAGMLAQAKTKLSENVQFICGDAEKLPL   94 (240)
T ss_pred             HHHHHHHHHHHHhhhhccCCCCeEEEECCCccHHHHHHHHhCCCCcEEEEeChHHHHHHHHHhcCCCCeEEecchhhCCC
Confidence            3445566666666520013346899999999999999999999999999999 8888777653  578999999987 44


Q ss_pred             C-c-ccEEEeec
Q 034578           80 P-N-ADAVFMKV   89 (90)
Q Consensus        80 p-~-~D~i~l~~   89 (90)
                      + + +|+|+.++
T Consensus        95 ~~~~fD~vi~~~  106 (240)
T TIGR02072        95 EDSSFDLIVSNL  106 (240)
T ss_pred             CCCceeEEEEhh
Confidence            4 3 89999864

This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.

>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific

Probab=99.33  E-value=8.5e-12  Score=83.18  Aligned_cols=83  Identities=20%  Similarity=0.278  Sum_probs=63.9

Q ss_pred             chhhhHHHHHhhcccCCCCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeeh-HHHHHhCCCC---CCeeEEEecCCCCC
Q 034578            4 TTKITMKAFVSHYKVDGFNNIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDL-QHVIATAPTH---EGVSHVGGDMFDAI   79 (90)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~---~rv~~~~~d~~~~~   79 (90)
                      .++.+++.++..++.  .....++||+|||+|.++..+++.+|..+++++|+ |.+++.++++   ...+++.+|+++.+
T Consensus        69 ~Te~Lv~~~l~~~~~--~~~~~~vLDlg~GsG~i~l~la~~~~~~~v~~vDis~~al~~A~~N~~~~~~~~~~~D~~~~l  146 (251)
T TIGR03704        69 RTEFLVDEAAALARP--RSGTLVVVDLCCGSGAVGAALAAALDGIELHAADIDPAAVRCARRNLADAGGTVHEGDLYDAL  146 (251)
T ss_pred             cHHHHHHHHHHhhcc--cCCCCEEEEecCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCEEEEeechhhc
Confidence            345566666654431  22345899999999999999999999999999999 9999988763   23689999998743


Q ss_pred             C-----cccEEEee
Q 034578           80 P-----NADAVFMK   88 (90)
Q Consensus        80 p-----~~D~i~l~   88 (90)
                      +     .+|+|+++
T Consensus       147 ~~~~~~~fDlVv~N  160 (251)
T TIGR03704       147 PTALRGRVDILAAN  160 (251)
T ss_pred             chhcCCCEeEEEEC
Confidence            2     38999875

This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.

>TIGR00138 gidB 16S rRNA methyltransferase GidB

Probab=99.32  E-value=6.7e-12  Score=80.10  Aligned_cols=66  Identities=18%  Similarity=0.242  Sum_probs=54.7

Q ss_pred             CCCeEEEecCCchHHHHHHHHHCCCCeEEEeeh-HHHHHhCCC------CCCeeEEEecCCC-CCC-cccEEEee
Q 034578           23 NIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDL-QHVIATAPT------HEGVSHVGGDMFD-AIP-NADAVFMK   88 (90)
Q Consensus        23 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~------~~rv~~~~~d~~~-~~p-~~D~i~l~   88 (90)
                      +..++||+|||+|.++..+++.+|..+++++|. +.+++.+++      .++++++.+|+.+ ... .+|+|++.
T Consensus        42 ~~~~vLDiGcGtG~~s~~la~~~~~~~V~~iD~s~~~~~~a~~~~~~~~~~~i~~i~~d~~~~~~~~~fD~I~s~  116 (181)
T TIGR00138        42 DGKKVIDIGSGAGFPGIPLAIARPELKLTLLESNHKKVAFLREVKAELGLNNVEIVNGRAEDFQHEEQFDVITSR  116 (181)
T ss_pred             CCCeEEEecCCCCccHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHhCCCCeEEEecchhhccccCCccEEEeh
Confidence            367999999999999999999999999999999 888776653      2579999999977 222 49998865

GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.

>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional

Probab=99.31  E-value=1.4e-11  Score=82.14  Aligned_cols=81  Identities=20%  Similarity=0.354  Sum_probs=65.4

Q ss_pred             hhhhHHHHHhhcccCCCCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeeh-HHHHHhCCC------CCCeeEEEecCCC
Q 034578            5 TKITMKAFVSHYKVDGFNNIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDL-QHVIATAPT------HEGVSHVGGDMFD   77 (90)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~------~~rv~~~~~d~~~   77 (90)
                      ++.+.+.++....   ..+..+|||+|||+|.++..+++..|..+++++|+ +.+++.+++      ..+++++.+|+++
T Consensus        93 te~l~~~~~~~~~---~~~~~~vLDiG~GsG~~~~~la~~~~~~~v~~iDis~~~l~~a~~n~~~~~~~~i~~~~~d~~~  169 (275)
T PRK09328         93 TEELVEWALEALL---LKEPLRVLDLGTGSGAIALALAKERPDAEVTAVDISPEALAVARRNAKHGLGARVEFLQGDWFE  169 (275)
T ss_pred             cHHHHHHHHHhcc---ccCCCEEEEEcCcHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhCCCCcEEEEEccccC
Confidence            4455666664444   34567899999999999999999999999999999 998888765      2579999999988


Q ss_pred             CCC--cccEEEee
Q 034578           78 AIP--NADAVFMK   88 (90)
Q Consensus        78 ~~p--~~D~i~l~   88 (90)
                      +++  .+|+|+.+
T Consensus       170 ~~~~~~fD~Iv~n  182 (275)
T PRK09328        170 PLPGGRFDLIVSN  182 (275)
T ss_pred             cCCCCceeEEEEC
Confidence            654  39999874

>PRK10258 biotin biosynthesis protein BioC; Provisional

Probab=99.31  E-value=1.2e-11  Score=81.82  Aligned_cols=80  Identities=15%  Similarity=0.209  Sum_probs=63.9

Q ss_pred             chhhhHHHHHhhcccCCCCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeeh-HHHHHhCCCC-CCeeEEEecCCC-CCC
Q 034578            4 TTKITMKAFVSHYKVDGFNNIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDL-QHVIATAPTH-EGVSHVGGDMFD-AIP   80 (90)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~-~rv~~~~~d~~~-~~p   80 (90)
                      .++..++.+++.++   ..+..+|||+|||+|.++..+.+.  ..+++++|+ |.+++.+++. ....++.+|+.+ +++
T Consensus        26 ~q~~~a~~l~~~l~---~~~~~~vLDiGcG~G~~~~~l~~~--~~~v~~~D~s~~~l~~a~~~~~~~~~~~~d~~~~~~~  100 (251)
T PRK10258         26 LQRQSADALLAMLP---QRKFTHVLDAGCGPGWMSRYWRER--GSQVTALDLSPPMLAQARQKDAADHYLAGDIESLPLA  100 (251)
T ss_pred             HHHHHHHHHHHhcC---ccCCCeEEEeeCCCCHHHHHHHHc--CCeEEEEECCHHHHHHHHhhCCCCCEEEcCcccCcCC
Confidence            46667778888777   345689999999999999988774  578999999 9999988764 346788999976 554


Q ss_pred             c--ccEEEee
Q 034578           81 N--ADAVFMK   88 (90)
Q Consensus        81 ~--~D~i~l~   88 (90)
                      +  +|+|+.+
T Consensus       101 ~~~fD~V~s~  110 (251)
T PRK10258        101 TATFDLAWSN  110 (251)
T ss_pred             CCcEEEEEEC
Confidence            3  8999865

>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional

Probab=99.31  E-value=1.4e-11  Score=82.52  Aligned_cols=76  Identities=17%  Similarity=0.357  Sum_probs=62.8

Q ss_pred             HHHHHhhcccCCCCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeeh-HHHHHhCCC----CCCeeEEEecCCC-CCCc-
Q 034578            9 MKAFVSHYKVDGFNNIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDL-QHVIATAPT----HEGVSHVGGDMFD-AIPN-   81 (90)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~----~~rv~~~~~d~~~-~~p~-   81 (90)
                      ...+++.++   +.+..+|||||||+|..+..+++.+ ..+++++|+ |.+++.+++    .+++++..+|+.+ ++|. 
T Consensus        41 ~~~~l~~l~---l~~~~~VLDiGcG~G~~a~~la~~~-~~~v~giD~s~~~~~~a~~~~~~~~~i~~~~~D~~~~~~~~~  116 (263)
T PTZ00098         41 TTKILSDIE---LNENSKVLDIGSGLGGGCKYINEKY-GAHVHGVDICEKMVNIAKLRNSDKNKIEFEANDILKKDFPEN  116 (263)
T ss_pred             HHHHHHhCC---CCCCCEEEEEcCCCChhhHHHHhhc-CCEEEEEECCHHHHHHHHHHcCcCCceEEEECCcccCCCCCC
Confidence            566777776   6677899999999999999998875 679999999 999887765    3579999999987 5653 


Q ss_pred             -ccEEEee
Q 034578           82 -ADAVFMK   88 (90)
Q Consensus        82 -~D~i~l~   88 (90)
                       ||+|+..
T Consensus       117 ~FD~V~s~  124 (263)
T PTZ00098        117 TFDMIYSR  124 (263)
T ss_pred             CeEEEEEh
Confidence             9999874

>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed

Probab=99.31  E-value=9.2e-12  Score=90.00  Aligned_cols=65  Identities=17%  Similarity=0.390  Sum_probs=56.9

Q ss_pred             CCeEEEecCCchHHHHHHHHHCCCCeEEEeeh-HHHHHhCCCC-------CCeeEEEecCCCCCC--cccEEEee
Q 034578           24 IRSMVDVGGGTGTVLAEIVKSYPHIKGINFDL-QHVIATAPTH-------EGVSHVGGDMFDAIP--NADAVFMK   88 (90)
Q Consensus        24 ~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~-------~rv~~~~~d~~~~~p--~~D~i~l~   88 (90)
                      ..+|||+|||+|.+++.+++++|+.+++++|+ |.+++.|+++       ++++++.+|+++.++  .+|+|+++
T Consensus       139 ~~~VLDlG~GsG~iai~la~~~p~~~v~avDis~~al~~A~~N~~~~~l~~~v~~~~~D~~~~~~~~~fDlIvsN  213 (506)
T PRK01544        139 FLNILELGTGSGCIAISLLCELPNANVIATDISLDAIEVAKSNAIKYEVTDRIQIIHSNWFENIEKQKFDFIVSN  213 (506)
T ss_pred             CCEEEEccCchhHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHcCCccceeeeecchhhhCcCCCccEEEEC
Confidence            36899999999999999999999999999999 9999988762       579999999988654  39999874

>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific

Probab=99.30  E-value=1.9e-11  Score=80.39  Aligned_cols=80  Identities=21%  Similarity=0.405  Sum_probs=63.6

Q ss_pred             hhhhHHHHHhhcccCCCCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeeh-HHHHHhCCC------CCCeeEEEecCCC
Q 034578            5 TKITMKAFVSHYKVDGFNNIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDL-QHVIATAPT------HEGVSHVGGDMFD   77 (90)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~------~~rv~~~~~d~~~   77 (90)
                      +..+.+.+++.++    ....+|||+|||+|.++..+++.+|..+++++|+ +.+++.+++      .++++++.+|+++
T Consensus        73 ~~~l~~~~l~~~~----~~~~~ilDig~G~G~~~~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~  148 (251)
T TIGR03534        73 TEELVEAALERLK----KGPLRVLDLGTGSGAIALALAKERPDARVTAVDISPEALAVARKNAARLGLDNVTFLQSDWFE  148 (251)
T ss_pred             hHHHHHHHHHhcc----cCCCeEEEEeCcHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECchhc
Confidence            3445555555554    2346899999999999999999999999999999 999988865      2479999999988


Q ss_pred             CCC--cccEEEee
Q 034578           78 AIP--NADAVFMK   88 (90)
Q Consensus        78 ~~p--~~D~i~l~   88 (90)
                      +++  .+|+|+++
T Consensus       149 ~~~~~~fD~Vi~n  161 (251)
T TIGR03534       149 PLPGGKFDLIVSN  161 (251)
T ss_pred             cCcCCceeEEEEC
Confidence            654  39999863

Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.

>PRK11207 tellurite resistance protein TehB; Provisional

Probab=99.30  E-value=1.5e-11  Score=79.19  Aligned_cols=76  Identities=14%  Similarity=0.153  Sum_probs=59.8

Q ss_pred             HHHHHhhcccCCCCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeeh-HHHHHhCCC------CCCeeEEEecCCC-CCC
Q 034578            9 MKAFVSHYKVDGFNNIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDL-QHVIATAPT------HEGVSHVGGDMFD-AIP   80 (90)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~------~~rv~~~~~d~~~-~~p   80 (90)
                      .+.+++.++   ..+..+|||+|||+|.++..++++  ..+++++|+ |.+++.+++      ..++++...|+.+ +++
T Consensus        19 ~~~l~~~l~---~~~~~~vLDiGcG~G~~a~~La~~--g~~V~gvD~S~~~i~~a~~~~~~~~~~~v~~~~~d~~~~~~~   93 (197)
T PRK11207         19 HSEVLEAVK---VVKPGKTLDLGCGNGRNSLYLAAN--GFDVTAWDKNPMSIANLERIKAAENLDNLHTAVVDLNNLTFD   93 (197)
T ss_pred             hHHHHHhcc---cCCCCcEEEECCCCCHHHHHHHHC--CCEEEEEeCCHHHHHHHHHHHHHcCCCcceEEecChhhCCcC
Confidence            455666666   445689999999999999999986  568999999 999987764      1458888899876 455


Q ss_pred             c-ccEEEeec
Q 034578           81 N-ADAVFMKV   89 (90)
Q Consensus        81 ~-~D~i~l~~   89 (90)
                      . +|+|+++.
T Consensus        94 ~~fD~I~~~~  103 (197)
T PRK11207         94 GEYDFILSTV  103 (197)
T ss_pred             CCcCEEEEec
Confidence            4 99998764

>PLN02336 phosphoethanolamine N-methyltransferase

Probab=99.29  E-value=2.1e-11  Score=87.14  Aligned_cols=77  Identities=21%  Similarity=0.324  Sum_probs=62.4

Q ss_pred             HHHHHhhcccCCCCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeeh-HHHHHhCCC-----CCCeeEEEecCCC-CCCc
Q 034578            9 MKAFVSHYKVDGFNNIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDL-QHVIATAPT-----HEGVSHVGGDMFD-AIPN   81 (90)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~-----~~rv~~~~~d~~~-~~p~   81 (90)
                      .+.+++.+.   +.+..+|||||||+|.++..+++.+ +.+++++|+ +.+++.|++     ..+++|..+|+++ ++|.
T Consensus       255 te~l~~~~~---~~~~~~vLDiGcG~G~~~~~la~~~-~~~v~gvDiS~~~l~~A~~~~~~~~~~v~~~~~d~~~~~~~~  330 (475)
T PLN02336        255 TKEFVDKLD---LKPGQKVLDVGCGIGGGDFYMAENF-DVHVVGIDLSVNMISFALERAIGRKCSVEFEVADCTKKTYPD  330 (475)
T ss_pred             HHHHHHhcC---CCCCCEEEEEeccCCHHHHHHHHhc-CCEEEEEECCHHHHHHHHHHhhcCCCceEEEEcCcccCCCCC
Confidence            455666665   5566799999999999999999876 779999999 999988764     3579999999987 5553


Q ss_pred             --ccEEEeec
Q 034578           82 --ADAVFMKV   89 (90)
Q Consensus        82 --~D~i~l~~   89 (90)
                        +|+|+...
T Consensus       331 ~~fD~I~s~~  340 (475)
T PLN02336        331 NSFDVIYSRD  340 (475)
T ss_pred             CCEEEEEECC
Confidence              99999753

>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional

Probab=99.28  E-value=2.2e-11  Score=84.46  Aligned_cols=76  Identities=17%  Similarity=0.271  Sum_probs=60.3

Q ss_pred             HHHHhhcccCCCCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeeh-HHHHHhCCCC-----CCeeEEEecCCCCCCc-c
Q 034578           10 KAFVSHYKVDGFNNIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDL-QHVIATAPTH-----EGVSHVGGDMFDAIPN-A   82 (90)
Q Consensus        10 ~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~-----~rv~~~~~d~~~~~p~-~   82 (90)
                      +.+++.++   .....+|||+|||+|.++..+++++|+.+++++|+ +.+++.++++     -..+++.+|.++..++ +
T Consensus       186 ~lLl~~l~---~~~~g~VLDlGCG~G~ls~~la~~~p~~~v~~vDis~~Al~~A~~nl~~n~l~~~~~~~D~~~~~~~~f  262 (342)
T PRK09489        186 QLLLSTLT---PHTKGKVLDVGCGAGVLSAVLARHSPKIRLTLSDVSAAALESSRATLAANGLEGEVFASNVFSDIKGRF  262 (342)
T ss_pred             HHHHHhcc---ccCCCeEEEeccCcCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCEEEEcccccccCCCc
Confidence            34455555   22346899999999999999999999999999999 8999888751     2457788898876554 9


Q ss_pred             cEEEee
Q 034578           83 DAVFMK   88 (90)
Q Consensus        83 D~i~l~   88 (90)
                      |+|+++
T Consensus       263 DlIvsN  268 (342)
T PRK09489        263 DMIISN  268 (342)
T ss_pred             cEEEEC
Confidence            999975

>PRK08317 hypothetical protein; Provisional

Probab=99.28  E-value=3.5e-11  Score=77.94  Aligned_cols=81  Identities=22%  Similarity=0.249  Sum_probs=64.7

Q ss_pred             hhhHHHHHhhcccCCCCCCCeEEEecCCchHHHHHHHHHC-CCCeEEEeeh-HHHHHhCCC-----CCCeeEEEecCCC-
Q 034578            6 KITMKAFVSHYKVDGFNNIRSMVDVGGGTGTVLAEIVKSY-PHIKGINFDL-QHVIATAPT-----HEGVSHVGGDMFD-   77 (90)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~-p~~~~~~~D~-p~~~~~a~~-----~~rv~~~~~d~~~-   77 (90)
                      ....+.+++.++   +.+..+|||+|||+|.++..+++.+ |..+++++|+ |.+++.+++     ..++++..+|+.+ 
T Consensus         5 ~~~~~~~~~~~~---~~~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~   81 (241)
T PRK08317          5 RRYRARTFELLA---VQPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAAGLGPNVEFVRGDADGL   81 (241)
T ss_pred             HHHHHHHHHHcC---CCCCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhhCCCCceEEEecccccC
Confidence            344455666666   6667899999999999999999998 7889999999 888877754     3679999999876 


Q ss_pred             CCC--cccEEEeec
Q 034578           78 AIP--NADAVFMKV   89 (90)
Q Consensus        78 ~~p--~~D~i~l~~   89 (90)
                      +++  .+|+|++.+
T Consensus        82 ~~~~~~~D~v~~~~   95 (241)
T PRK08317         82 PFPDGSFDAVRSDR   95 (241)
T ss_pred             CCCCCCceEEEEec
Confidence            444  389999865

>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=99.28  E-value=4.5e-11  Score=77.43  Aligned_cols=78  Identities=15%  Similarity=0.149  Sum_probs=60.8

Q ss_pred             HHHHHhhcccCCCCCCCeEEEecCCchHHHHHHHHHCC-CCeEEEeeh-HHHHHhCCCC-------CCeeEEEecCCCCC
Q 034578            9 MKAFVSHYKVDGFNNIRSMVDVGGGTGTVLAEIVKSYP-HIKGINFDL-QHVIATAPTH-------EGVSHVGGDMFDAI   79 (90)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p-~~~~~~~D~-p~~~~~a~~~-------~rv~~~~~d~~~~~   79 (90)
                      ...+++.+.   ..+..+|||+|||+|.++..+++..+ ..+++++|+ |.+++.++++       .+++++.+|+.+.+
T Consensus        61 ~~~~~~~l~---~~~~~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~~~~~~v~~~~~d~~~~~  137 (205)
T PRK13944         61 VAMMCELIE---PRPGMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERLGYWGVVEVYHGDGKRGL  137 (205)
T ss_pred             HHHHHHhcC---CCCCCEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEECCcccCC
Confidence            444555555   45568999999999999999998864 678999999 9998877651       46899999998744


Q ss_pred             C---cccEEEeec
Q 034578           80 P---NADAVFMKV   89 (90)
Q Consensus        80 p---~~D~i~l~~   89 (90)
                      +   .||+|++..
T Consensus       138 ~~~~~fD~Ii~~~  150 (205)
T PRK13944        138 EKHAPFDAIIVTA  150 (205)
T ss_pred             ccCCCccEEEEcc
Confidence            3   399998753

>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase

Probab=99.27  E-value=4.2e-11  Score=77.90  Aligned_cols=78  Identities=12%  Similarity=0.170  Sum_probs=62.9

Q ss_pred             hHHHHHhhcccCCCCCCCeEEEecCCchHHHHHHHHHCC-CCeEEEeeh-HHHHHhCCCC------CCeeEEEecCCCCC
Q 034578            8 TMKAFVSHYKVDGFNNIRSMVDVGGGTGTVLAEIVKSYP-HIKGINFDL-QHVIATAPTH------EGVSHVGGDMFDAI   79 (90)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p-~~~~~~~D~-p~~~~~a~~~------~rv~~~~~d~~~~~   79 (90)
                      ....+++.++   ..+..+|||+|||+|.++..+++..+ ..+++++|+ |.+++.|+++      ++++++.+|..+.+
T Consensus        65 ~~~~~~~~l~---~~~~~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~g~~~v~~~~~d~~~~~  141 (215)
T TIGR00080        65 MVAMMTELLE---LKPGMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRKLGLDNVIVIVGDGTQGW  141 (215)
T ss_pred             HHHHHHHHhC---CCCcCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCeEEEECCcccCC
Confidence            3456666666   56778999999999999999999865 578999999 9999888752      57999999998743


Q ss_pred             C---cccEEEee
Q 034578           80 P---NADAVFMK   88 (90)
Q Consensus        80 p---~~D~i~l~   88 (90)
                      +   .||+|++.
T Consensus       142 ~~~~~fD~Ii~~  153 (215)
T TIGR00080       142 EPLAPYDRIYVT  153 (215)
T ss_pred             cccCCCCEEEEc
Confidence            2   39999875

Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.

>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=99.27  E-value=1.1e-12  Score=75.54  Aligned_cols=63  Identities=24%  Similarity=0.405  Sum_probs=42.1

Q ss_pred             EEecCCchHHHHHHHHHCCCCeEEEeeh-HHHHHhCCCC------C---CeeEEEecCCCCC-C-cccEEEeecC
Q 034578           28 VDVGGGTGTVLAEIVKSYPHIKGINFDL-QHVIATAPTH------E---GVSHVGGDMFDAI-P-NADAVFMKVA   90 (90)
Q Consensus        28 lDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~------~---rv~~~~~d~~~~~-p-~~D~i~l~~v   90 (90)
                      ||||||+|.++..+++++|..+++++|+ |.+++.++++      .   ++++...+.++.. + .||+|++.++
T Consensus         1 LdiGcG~G~~~~~l~~~~~~~~~~~~D~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~V~~~~v   75 (99)
T PF08242_consen    1 LDIGCGTGRLLRALLEELPDARYTGVDISPSMLERARERLAELGNDNFERLRFDVLDLFDYDPPESFDLVVASNV   75 (99)
T ss_dssp             -EESTTTS-TTTTHHHHC-EEEEEEEESSSSTTSTTCCCHHHCT---EEEEE--SSS---CCC----SEEEEE-T
T ss_pred             CEeCccChHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcCCcceeEEEeecCChhhcccccccceehhhhh
Confidence            7999999999999999999999999999 9999888772      2   3444444444433 3 4999998865

The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.

>PRK05785 hypothetical protein; Provisional

Probab=99.27  E-value=2.8e-11  Score=79.55  Aligned_cols=64  Identities=16%  Similarity=0.288  Sum_probs=53.4

Q ss_pred             CCCeEEEecCCchHHHHHHHHHCCCCeEEEeeh-HHHHHhCCCCCCeeEEEecCCC-CCCc--ccEEEeec
Q 034578           23 NIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDL-QHVIATAPTHEGVSHVGGDMFD-AIPN--ADAVFMKV   89 (90)
Q Consensus        23 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~~rv~~~~~d~~~-~~p~--~D~i~l~~   89 (90)
                      ...+|||||||||.++..+++.+ +.+++++|+ ++|++.+++..  .++.+|+.+ ++++  +|+|+++.
T Consensus        51 ~~~~VLDlGcGtG~~~~~l~~~~-~~~v~gvD~S~~Ml~~a~~~~--~~~~~d~~~lp~~d~sfD~v~~~~  118 (226)
T PRK05785         51 RPKKVLDVAAGKGELSYHFKKVF-KYYVVALDYAENMLKMNLVAD--DKVVGSFEALPFRDKSFDVVMSSF  118 (226)
T ss_pred             CCCeEEEEcCCCCHHHHHHHHhc-CCEEEEECCCHHHHHHHHhcc--ceEEechhhCCCCCCCEEEEEecC
Confidence            35799999999999999999987 579999999 99999988643  467888877 6654  99999764

>COG4123 Predicted O-methyltransferase [General function prediction only]

Probab=99.26  E-value=8.6e-12  Score=82.99  Aligned_cols=68  Identities=13%  Similarity=0.261  Sum_probs=58.9

Q ss_pred             CCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeeh-HHHHHhCCC-------CCCeeEEEecCCCC---CC--cccEEEe
Q 034578           21 FNNIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDL-QHVIATAPT-------HEGVSHVGGDMFDA---IP--NADAVFM   87 (90)
Q Consensus        21 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~-------~~rv~~~~~d~~~~---~p--~~D~i~l   87 (90)
                      .....+|||+|||+|.++..++++.+.++++++|+ +.+.+.|++       .+|++++.+|+.+.   .+  .||+|++
T Consensus        42 ~~~~~~IlDlGaG~G~l~L~la~r~~~a~I~~VEiq~~~a~~A~~nv~ln~l~~ri~v~~~Di~~~~~~~~~~~fD~Ii~  121 (248)
T COG4123          42 VPKKGRILDLGAGNGALGLLLAQRTEKAKIVGVEIQEEAAEMAQRNVALNPLEERIQVIEADIKEFLKALVFASFDLIIC  121 (248)
T ss_pred             cccCCeEEEecCCcCHHHHHHhccCCCCcEEEEEeCHHHHHHHHHHHHhCcchhceeEehhhHHHhhhcccccccCEEEe
Confidence            44578999999999999999999999999999999 999998876       38999999999772   22  2899998


Q ss_pred             e
Q 034578           88 K   88 (90)
Q Consensus        88 ~   88 (90)
                      +
T Consensus       122 N  122 (248)
T COG4123         122 N  122 (248)
T ss_pred             C
Confidence            6

>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]

Probab=99.26  E-value=2.6e-11  Score=82.01  Aligned_cols=80  Identities=15%  Similarity=0.204  Sum_probs=65.6

Q ss_pred             chhhhHHHHHhhcccCCCCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeeh-HHHHHhCCC-------CCCeeEEEecC
Q 034578            4 TTKITMKAFVSHYKVDGFNNIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDL-QHVIATAPT-------HEGVSHVGGDM   75 (90)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~-------~~rv~~~~~d~   75 (90)
                      -|....+.+++.+.   +++..+|||||||.|.+++.+++++ +++++++++ ++..+.+++       ..++++...|+
T Consensus        56 AQ~~k~~~~~~kl~---L~~G~~lLDiGCGWG~l~~~aA~~y-~v~V~GvTlS~~Q~~~~~~r~~~~gl~~~v~v~l~d~  131 (283)
T COG2230          56 AQRAKLDLILEKLG---LKPGMTLLDIGCGWGGLAIYAAEEY-GVTVVGVTLSEEQLAYAEKRIAARGLEDNVEVRLQDY  131 (283)
T ss_pred             HHHHHHHHHHHhcC---CCCCCEEEEeCCChhHHHHHHHHHc-CCEEEEeeCCHHHHHHHHHHHHHcCCCcccEEEeccc
Confidence            45556677888888   8889999999999999999999999 999999999 887777665       25899999998


Q ss_pred             CCCCCcccEEEe
Q 034578           76 FDAIPNADAVFM   87 (90)
Q Consensus        76 ~~~~p~~D~i~l   87 (90)
                      .+..+.+|-|+.
T Consensus       132 rd~~e~fDrIvS  143 (283)
T COG2230         132 RDFEEPFDRIVS  143 (283)
T ss_pred             cccccccceeee
Confidence            763334887763

>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional

Probab=99.26  E-value=3.8e-11  Score=80.57  Aligned_cols=66  Identities=17%  Similarity=0.305  Sum_probs=55.3

Q ss_pred             CCCeEEEecCCchHHHHHHHHHCCC---CeEEEeeh-HHHHHhCCC-CCCeeEEEecCCC-CCCc--ccEEEee
Q 034578           23 NIRSMVDVGGGTGTVLAEIVKSYPH---IKGINFDL-QHVIATAPT-HEGVSHVGGDMFD-AIPN--ADAVFMK   88 (90)
Q Consensus        23 ~~~~vlDvG~G~G~~~~~l~~~~p~---~~~~~~D~-p~~~~~a~~-~~rv~~~~~d~~~-~~p~--~D~i~l~   88 (90)
                      +..+|||+|||+|.++..+++..|.   .+++++|+ +.+++.|++ .+++++..+|..+ +++.  +|+|+..
T Consensus        85 ~~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~~~~~~~~~~d~~~lp~~~~sfD~I~~~  158 (272)
T PRK11088         85 KATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAKRYPQVTFCVASSHRLPFADQSLDAIIRI  158 (272)
T ss_pred             CCCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHhCCCCeEEEeecccCCCcCCceeEEEEe
Confidence            4578999999999999999998875   37899999 999998876 4779999999887 6553  9999853

>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=99.26  E-value=6.8e-11  Score=77.01  Aligned_cols=79  Identities=13%  Similarity=0.166  Sum_probs=63.1

Q ss_pred             hhHHHHHhhcccCCCCCCCeEEEecCCchHHHHHHHHHC-CCCeEEEeeh-HHHHHhCCC------CCCeeEEEecCCCC
Q 034578            7 ITMKAFVSHYKVDGFNNIRSMVDVGGGTGTVLAEIVKSY-PHIKGINFDL-QHVIATAPT------HEGVSHVGGDMFDA   78 (90)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~-p~~~~~~~D~-p~~~~~a~~------~~rv~~~~~d~~~~   78 (90)
                      .....+++.++   +.+..+|||+|||+|.++..+++.. +..+++++|+ |.+++.+++      .++++++.+|..+.
T Consensus        63 ~~~~~~~~~l~---~~~g~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~~g~~~v~~~~gd~~~~  139 (212)
T PRK13942         63 HMVAIMCELLD---LKEGMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKLGYDNVEVIVGDGTLG  139 (212)
T ss_pred             HHHHHHHHHcC---CCCcCEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEECCcccC
Confidence            34455666666   6677899999999999999999885 4579999999 999988875      25799999998874


Q ss_pred             CC---cccEEEee
Q 034578           79 IP---NADAVFMK   88 (90)
Q Consensus        79 ~p---~~D~i~l~   88 (90)
                      ++   .||+|++.
T Consensus       140 ~~~~~~fD~I~~~  152 (212)
T PRK13942        140 YEENAPYDRIYVT  152 (212)
T ss_pred             CCcCCCcCEEEEC
Confidence            32   39999875

>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=99.25  E-value=2.9e-11  Score=68.16  Aligned_cols=61  Identities=33%  Similarity=0.515  Sum_probs=51.6

Q ss_pred             EEecCCchHHHHHHHHHCCCCeEEEeeh-HHHHHhCCC---CCCeeEEEecCCC-CCCc--ccEEEeec
Q 034578           28 VDVGGGTGTVLAEIVKSYPHIKGINFDL-QHVIATAPT---HEGVSHVGGDMFD-AIPN--ADAVFMKV   89 (90)
Q Consensus        28 lDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~---~~rv~~~~~d~~~-~~p~--~D~i~l~~   89 (90)
                      ||+|||+|..+..++++ +..+++++|. +.+++.+++   ..++++..+|+.+ ++|+  +|+|++.+
T Consensus         1 LdiG~G~G~~~~~l~~~-~~~~v~~~D~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~sfD~v~~~~   68 (95)
T PF08241_consen    1 LDIGCGTGRFAAALAKR-GGASVTGIDISEEMLEQARKRLKNEGVSFRQGDAEDLPFPDNSFDVVFSNS   68 (95)
T ss_dssp             EEET-TTSHHHHHHHHT-TTCEEEEEES-HHHHHHHHHHTTTSTEEEEESBTTSSSS-TT-EEEEEEES
T ss_pred             CEecCcCCHHHHHHHhc-cCCEEEEEeCCHHHHHHHHhcccccCchheeehHHhCcccccccccccccc
Confidence            79999999999999998 8999999999 888988876   3567799999988 6664  99999865

The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....

>smart00650 rADc Ribosomal RNA adenine dimethylases

Probab=99.25  E-value=4.8e-11  Score=75.03  Aligned_cols=75  Identities=12%  Similarity=0.314  Sum_probs=60.4

Q ss_pred             HHHHHhhcccCCCCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeeh-HHHHHhCCC----CCCeeEEEecCCC-CCCc-
Q 034578            9 MKAFVSHYKVDGFNNIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDL-QHVIATAPT----HEGVSHVGGDMFD-AIPN-   81 (90)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~----~~rv~~~~~d~~~-~~p~-   81 (90)
                      ++.+++.++   +.+..++||+|||+|.++..++++  ..+++++|+ +.+++.+++    .++++++.+|+.+ +++. 
T Consensus         2 ~~~i~~~~~---~~~~~~vLEiG~G~G~lt~~l~~~--~~~v~~vE~~~~~~~~~~~~~~~~~~v~ii~~D~~~~~~~~~   76 (169)
T smart00650        2 IDKIVRAAN---LRPGDTVLEIGPGKGALTEELLER--AARVTAIEIDPRLAPRLREKFAAADNLTVIHGDALKFDLPKL   76 (169)
T ss_pred             HHHHHHhcC---CCCcCEEEEECCCccHHHHHHHhc--CCeEEEEECCHHHHHHHHHHhccCCCEEEEECchhcCCcccc
Confidence            456777776   556679999999999999999998  578999999 888887765    3589999999988 4553 


Q ss_pred             -ccEEEee
Q 034578           82 -ADAVFMK   88 (90)
Q Consensus        82 -~D~i~l~   88 (90)
                       +|.|+.+
T Consensus        77 ~~d~vi~n   84 (169)
T smart00650       77 QPYKVVGN   84 (169)
T ss_pred             CCCEEEEC
Confidence             7887653

>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A

Probab=99.24  E-value=1e-11  Score=71.98  Aligned_cols=62  Identities=26%  Similarity=0.420  Sum_probs=49.6

Q ss_pred             EEEecCCchHHHHHHHHHC---CCCeEEEeeh-HHHHHhCCC-----CCCeeEEEecCCC-CC--CcccEEEee
Q 034578           27 MVDVGGGTGTVLAEIVKSY---PHIKGINFDL-QHVIATAPT-----HEGVSHVGGDMFD-AI--PNADAVFMK   88 (90)
Q Consensus        27 vlDvG~G~G~~~~~l~~~~---p~~~~~~~D~-p~~~~~a~~-----~~rv~~~~~d~~~-~~--p~~D~i~l~   88 (90)
                      |||+|||+|..+..+++.+   |..+++++|+ +.+++.+++     ..+++++.+|+.+ +.  ..+|+|+++
T Consensus         1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~~~~~~~~~~~D~~~l~~~~~~~D~v~~~   74 (101)
T PF13649_consen    1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSEDGPKVRFVQADARDLPFSDGKFDLVVCS   74 (101)
T ss_dssp             -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHHTTTTSEEEESCTTCHHHHSSSEEEEEE-
T ss_pred             CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchhcCCceEEEECCHhHCcccCCCeeEEEEc
Confidence            7999999999999999997   5689999999 999998875     2489999999987 32  249999984

>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional

Probab=99.22  E-value=8e-11  Score=78.66  Aligned_cols=78  Identities=17%  Similarity=0.262  Sum_probs=63.5

Q ss_pred             hhhHHHHHhhcccCCCCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeeh-HHHHHhCCC----CCCeeEEEecCCC-CC
Q 034578            6 KITMKAFVSHYKVDGFNNIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDL-QHVIATAPT----HEGVSHVGGDMFD-AI   79 (90)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~----~~rv~~~~~d~~~-~~   79 (90)
                      ..+++.+++..+   ..+..+|||+|||+|.++..++++.  .+++++|+ +.+++.+++    .++++++.+|+.+ ++
T Consensus        15 ~~~~~~iv~~~~---~~~~~~VLEIG~G~G~lt~~L~~~~--~~v~~vEid~~~~~~l~~~~~~~~~v~ii~~D~~~~~~   89 (258)
T PRK14896         15 DRVVDRIVEYAE---DTDGDPVLEIGPGKGALTDELAKRA--KKVYAIELDPRLAEFLRDDEIAAGNVEIIEGDALKVDL   89 (258)
T ss_pred             HHHHHHHHHhcC---CCCcCeEEEEeCccCHHHHHHHHhC--CEEEEEECCHHHHHHHHHHhccCCCEEEEEeccccCCc
Confidence            455677777776   5567899999999999999999983  57999999 888887765    3689999999988 66


Q ss_pred             CcccEEEee
Q 034578           80 PNADAVFMK   88 (90)
Q Consensus        80 p~~D~i~l~   88 (90)
                      +.+|.|+.+
T Consensus        90 ~~~d~Vv~N   98 (258)
T PRK14896         90 PEFNKVVSN   98 (258)
T ss_pred             hhceEEEEc
Confidence            668877654

>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes

Probab=99.22  E-value=3.3e-11  Score=78.37  Aligned_cols=64  Identities=19%  Similarity=0.327  Sum_probs=54.6

Q ss_pred             CeEEEecCCchHHHHHHHHHCCCCeEEEeeh-HHHHHhCCC-------CCCeeEEEecCCC-CCCc-ccEEEee
Q 034578           25 RSMVDVGGGTGTVLAEIVKSYPHIKGINFDL-QHVIATAPT-------HEGVSHVGGDMFD-AIPN-ADAVFMK   88 (90)
Q Consensus        25 ~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~-------~~rv~~~~~d~~~-~~p~-~D~i~l~   88 (90)
                      .+|||+|||+|.++..+++.+|+.+++++|+ |.+++.+++       .++++++.+|+.+ +.+. +|+|+..
T Consensus         1 ~~vLDiGcG~G~~~~~la~~~~~~~v~gid~s~~~~~~a~~~~~~~gl~~~i~~~~~d~~~~~~~~~fD~I~~~   74 (224)
T smart00828        1 KRVLDFGCGYGSDLIDLAERHPHLQLHGYTISPEQAEVGRERIRALGLQGRIRIFYRDSAKDPFPDTYDLVFGF   74 (224)
T ss_pred             CeEEEECCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcCCCcceEEEecccccCCCCCCCCEeehH
Confidence            3799999999999999999999999999999 888887764       3678999999976 4554 9999864

>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed

Probab=99.22  E-value=5.6e-11  Score=79.98  Aligned_cols=76  Identities=11%  Similarity=0.226  Sum_probs=60.4

Q ss_pred             hhhHHHHHhhcccCCCCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeeh-HHHHHhCCCC---CCeeEEEecCCC-CCC
Q 034578            6 KITMKAFVSHYKVDGFNNIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDL-QHVIATAPTH---EGVSHVGGDMFD-AIP   80 (90)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~---~rv~~~~~d~~~-~~p   80 (90)
                      ..+++.+++.++   ..+..+|||+|||+|.++..++++.+  +++++|+ +.+++.++++   ++++++.+|+.+ +++
T Consensus        28 ~~i~~~i~~~l~---~~~~~~VLEiG~G~G~lt~~L~~~~~--~v~avE~d~~~~~~~~~~~~~~~v~~i~~D~~~~~~~  102 (272)
T PRK00274         28 ENILDKIVDAAG---PQPGDNVLEIGPGLGALTEPLLERAA--KVTAVEIDRDLAPILAETFAEDNLTIIEGDALKVDLS  102 (272)
T ss_pred             HHHHHHHHHhcC---CCCcCeEEEeCCCccHHHHHHHHhCC--cEEEEECCHHHHHHHHHhhccCceEEEEChhhcCCHH
Confidence            345677777776   55678999999999999999999976  7899999 9999988653   689999999987 444


Q ss_pred             cc--cEEE
Q 034578           81 NA--DAVF   86 (90)
Q Consensus        81 ~~--D~i~   86 (90)
                      ..  |.++
T Consensus       103 ~~~~~~vv  110 (272)
T PRK00274        103 ELQPLKVV  110 (272)
T ss_pred             HcCcceEE
Confidence            43  4444

>PLN02490 MPBQ/MSBQ methyltransferase

Probab=99.22  E-value=7.3e-11  Score=81.79  Aligned_cols=80  Identities=26%  Similarity=0.279  Sum_probs=62.8

Q ss_pred             hHHHHHhhcccCCCCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeeh-HHHHHhCCCC---CCeeEEEecCCC-CCCc-
Q 034578            8 TMKAFVSHYKVDGFNNIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDL-QHVIATAPTH---EGVSHVGGDMFD-AIPN-   81 (90)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~---~rv~~~~~d~~~-~~p~-   81 (90)
                      ..+.+++....  ..+..+|||||||+|.++..+++..+..+++++|. +.+++.++++   .+++++.+|+.+ +++. 
T Consensus       100 ~r~~~l~~~~l--~~~~~~VLDLGcGtG~~~l~La~~~~~~~VtgVD~S~~mL~~A~~k~~~~~i~~i~gD~e~lp~~~~  177 (340)
T PLN02490        100 MRDDALEPADL--SDRNLKVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIIEGDAEDLPFPTD  177 (340)
T ss_pred             HHHHHHhhccc--CCCCCEEEEEecCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhhhccCCeEEeccHHhCCCCCC
Confidence            34445555541  23457999999999999999999998899999999 9999888763   578999999977 5543 


Q ss_pred             -ccEEEeec
Q 034578           82 -ADAVFMKV   89 (90)
Q Consensus        82 -~D~i~l~~   89 (90)
                       +|+|++..
T Consensus       178 sFDvVIs~~  186 (340)
T PLN02490        178 YADRYVSAG  186 (340)
T ss_pred             ceeEEEEcC
Confidence             99998754

>PRK06202 hypothetical protein; Provisional

Probab=99.21  E-value=1.1e-10  Score=76.54  Aligned_cols=68  Identities=16%  Similarity=0.194  Sum_probs=51.5

Q ss_pred             CCCCeEEEecCCchHHHHHHHHH----CCCCeEEEeeh-HHHHHhCCCC---CCeeEEEecCCC-CC-C-cccEEEeec
Q 034578           22 NNIRSMVDVGGGTGTVLAEIVKS----YPHIKGINFDL-QHVIATAPTH---EGVSHVGGDMFD-AI-P-NADAVFMKV   89 (90)
Q Consensus        22 ~~~~~vlDvG~G~G~~~~~l~~~----~p~~~~~~~D~-p~~~~~a~~~---~rv~~~~~d~~~-~~-p-~~D~i~l~~   89 (90)
                      .+..+|||+|||+|.++..+++.    .|+.+++++|+ |.+++.+++.   .++++...+... +. + .+|+|+++.
T Consensus        59 ~~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~l~~~~~~fD~V~~~~  137 (232)
T PRK06202         59 DRPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPRRPGVTFRQAVSDELVAEGERFDVVTSNH  137 (232)
T ss_pred             CCCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhccccCCCeEEEEecccccccCCCccEEEECC
Confidence            35679999999999999888764    46679999999 9999988763   456666655433 22 3 399999875

>TIGR00477 tehB tellurite resistance protein TehB

Probab=99.21  E-value=7e-11  Score=76.01  Aligned_cols=76  Identities=18%  Similarity=0.111  Sum_probs=57.6

Q ss_pred             HHHHHhhcccCCCCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeeh-HHHHHhCCC-----CCCeeEEEecCCC-CCCc
Q 034578            9 MKAFVSHYKVDGFNNIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDL-QHVIATAPT-----HEGVSHVGGDMFD-AIPN   81 (90)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~-----~~rv~~~~~d~~~-~~p~   81 (90)
                      .+.+++.++   ..+..+|||+|||+|.++..++++  ..+++++|+ |.+++.+++     +-++++...|+.. ++++
T Consensus        19 ~~~l~~~~~---~~~~~~vLDiGcG~G~~a~~la~~--g~~V~~iD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~   93 (195)
T TIGR00477        19 HSAVREAVK---TVAPCKTLDLGCGQGRNSLYLSLA--GYDVRAWDHNPASIASVLDMKARENLPLRTDAYDINAAALNE   93 (195)
T ss_pred             hHHHHHHhc---cCCCCcEEEeCCCCCHHHHHHHHC--CCeEEEEECCHHHHHHHHHHHHHhCCCceeEeccchhccccC
Confidence            456666666   445689999999999999999986  578999999 999987654     2246777778755 4444


Q ss_pred             -ccEEEeec
Q 034578           82 -ADAVFMKV   89 (90)
Q Consensus        82 -~D~i~l~~   89 (90)
                       +|+|+++.
T Consensus        94 ~fD~I~~~~  102 (195)
T TIGR00477        94 DYDFIFSTV  102 (195)
T ss_pred             CCCEEEEec
Confidence             99998753

Part of a tellurite-reducing operon tehA and tehB

>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed

Probab=99.21  E-value=1.6e-10  Score=75.19  Aligned_cols=77  Identities=19%  Similarity=0.288  Sum_probs=60.4

Q ss_pred             HHHHhhcccCCCCCCCeEEEecCCchHHHHHHHHHCC-CCeEEEeeh-HHHHHhCCC-------CCCeeEEEecCCC-CC
Q 034578           10 KAFVSHYKVDGFNNIRSMVDVGGGTGTVLAEIVKSYP-HIKGINFDL-QHVIATAPT-------HEGVSHVGGDMFD-AI   79 (90)
Q Consensus        10 ~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p-~~~~~~~D~-p~~~~~a~~-------~~rv~~~~~d~~~-~~   79 (90)
                      ..+++.+.   ..+..+|||+|||+|.++..+++.+| ..+++++|+ +.+++.+++       ..+++++.+|+.+ +.
T Consensus        41 ~~~~~~~~---~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~  117 (239)
T PRK00216         41 RKTIKWLG---VRPGDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRDLGLSGNVEFVQGDAEALPF  117 (239)
T ss_pred             HHHHHHhC---CCCCCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhcccccccCeEEEecccccCCC
Confidence            34445444   33457999999999999999999998 789999999 888887765       2568999999987 33


Q ss_pred             C--cccEEEeec
Q 034578           80 P--NADAVFMKV   89 (90)
Q Consensus        80 p--~~D~i~l~~   89 (90)
                      +  .+|+|++++
T Consensus       118 ~~~~~D~I~~~~  129 (239)
T PRK00216        118 PDNSFDAVTIAF  129 (239)
T ss_pred             CCCCccEEEEec
Confidence            3  389998764

>PRK04457 spermidine synthase; Provisional

Probab=99.20  E-value=6.8e-11  Score=79.33  Aligned_cols=67  Identities=18%  Similarity=0.305  Sum_probs=57.4

Q ss_pred             CCCCeEEEecCCchHHHHHHHHHCCCCeEEEeeh-HHHHHhCCC-------CCCeeEEEecCCC---CCCc-ccEEEee
Q 034578           22 NNIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDL-QHVIATAPT-------HEGVSHVGGDMFD---AIPN-ADAVFMK   88 (90)
Q Consensus        22 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~-------~~rv~~~~~d~~~---~~p~-~D~i~l~   88 (90)
                      +++.+|||||||+|.++..+++.+|..+++++|+ |.+++.|++       .+|++++.+|..+   ..+. ||+|++.
T Consensus        65 ~~~~~vL~IG~G~G~l~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~rv~v~~~Da~~~l~~~~~~yD~I~~D  143 (262)
T PRK04457         65 PRPQHILQIGLGGGSLAKFIYTYLPDTRQTAVEINPQVIAVARNHFELPENGERFEVIEADGAEYIAVHRHSTDVILVD  143 (262)
T ss_pred             CCCCEEEEECCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHcCCCCCCCceEEEECCHHHHHHhCCCCCCEEEEe
Confidence            3568999999999999999999999999999999 999998865       2689999999865   2343 9999864

>smart00138 MeTrc Methyltransferase, chemotaxis proteins

Probab=99.20  E-value=1.1e-10  Score=78.41  Aligned_cols=68  Identities=18%  Similarity=0.302  Sum_probs=54.6

Q ss_pred             CCCeEEEecCCchH----HHHHHHHHCC-----CCeEEEeeh-HHHHHhCCCC---------------------------
Q 034578           23 NIRSMVDVGGGTGT----VLAEIVKSYP-----HIKGINFDL-QHVIATAPTH---------------------------   65 (90)
Q Consensus        23 ~~~~vlDvG~G~G~----~~~~l~~~~p-----~~~~~~~D~-p~~~~~a~~~---------------------------   65 (90)
                      +..+|+|+|||||.    ++..+++..|     +.++++.|+ +.|++.|++.                           
T Consensus        99 ~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~~~y~~~~~~~~~~~~~~~yf~~~~~~~~  178 (264)
T smart00138       99 RRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARAGIYPERELEDLPKALLARYFSRVEDKYR  178 (264)
T ss_pred             CCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHHcCCCCHHHHhcCCHHHHhhhEEeCCCeEE
Confidence            45799999999996    5666777655     578999999 9999988762                           


Q ss_pred             ------CCeeEEEecCCCC-CC--cccEEEeecC
Q 034578           66 ------EGVSHVGGDMFDA-IP--NADAVFMKVA   90 (90)
Q Consensus        66 ------~rv~~~~~d~~~~-~p--~~D~i~l~~v   90 (90)
                            .+++|..+|+.+. .|  .+|+|+++++
T Consensus       179 v~~~ir~~V~F~~~dl~~~~~~~~~fD~I~crnv  212 (264)
T smart00138      179 VKPELKERVRFAKHNLLAESPPLGDFDLIFCRNV  212 (264)
T ss_pred             EChHHhCcCEEeeccCCCCCCccCCCCEEEechh
Confidence                  3689999999983 33  2999999764

Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.

>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional

Probab=99.19  E-value=5.5e-11  Score=79.06  Aligned_cols=65  Identities=18%  Similarity=0.287  Sum_probs=53.6

Q ss_pred             CCCeEEEecCCchHHHHHHHHHCCCCeEEEeeh-HHHHHhCCC-------CCCeeEEEecCCC--CC-Cc-ccEEEeec
Q 034578           23 NIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDL-QHVIATAPT-------HEGVSHVGGDMFD--AI-PN-ADAVFMKV   89 (90)
Q Consensus        23 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~-------~~rv~~~~~d~~~--~~-p~-~D~i~l~~   89 (90)
                      +..+|||+|||+|.++..+++.  ..+++++|+ |.+++.|++       .++++++.+|+.+  +. +. +|+|++..
T Consensus        44 ~~~~vLDiGcG~G~~a~~la~~--g~~v~~vD~s~~~l~~a~~~~~~~g~~~~v~~~~~d~~~l~~~~~~~fD~V~~~~  120 (255)
T PRK11036         44 RPLRVLDAGGGEGQTAIKLAEL--GHQVILCDLSAEMIQRAKQAAEAKGVSDNMQFIHCAAQDIAQHLETPVDLILFHA  120 (255)
T ss_pred             CCCEEEEeCCCchHHHHHHHHc--CCEEEEEECCHHHHHHHHHHHHhcCCccceEEEEcCHHHHhhhcCCCCCEEEehh
Confidence            4579999999999999999987  468999999 999998875       2578999999865  23 33 99999865

>PRK07402 precorrin-6B methylase; Provisional

Probab=99.19  E-value=1.4e-10  Score=74.41  Aligned_cols=76  Identities=20%  Similarity=0.307  Sum_probs=59.1

Q ss_pred             HHHHHhhcccCCCCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeeh-HHHHHhCCCC------CCeeEEEecCCC---C
Q 034578            9 MKAFVSHYKVDGFNNIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDL-QHVIATAPTH------EGVSHVGGDMFD---A   78 (90)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~------~rv~~~~~d~~~---~   78 (90)
                      ...+++.++   ..+..+|||+|||+|.++..+++..|..+++++|+ |.+++.++++      ++++++.+|..+   .
T Consensus        29 ~~~l~~~l~---~~~~~~VLDiG~G~G~~~~~la~~~~~~~V~~vD~s~~~~~~a~~n~~~~~~~~v~~~~~d~~~~~~~  105 (196)
T PRK07402         29 RLLLISQLR---LEPDSVLWDIGAGTGTIPVEAGLLCPKGRVIAIERDEEVVNLIRRNCDRFGVKNVEVIEGSAPECLAQ  105 (196)
T ss_pred             HHHHHHhcC---CCCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCCeEEEECchHHHHhh
Confidence            334566665   55678999999999999999999899999999999 9999887652      579999998865   2


Q ss_pred             CC-cccEEEe
Q 034578           79 IP-NADAVFM   87 (90)
Q Consensus        79 ~p-~~D~i~l   87 (90)
                      +. .+|.+++
T Consensus       106 ~~~~~d~v~~  115 (196)
T PRK07402        106 LAPAPDRVCI  115 (196)
T ss_pred             CCCCCCEEEE
Confidence            32 3566654

>PRK06922 hypothetical protein; Provisional

Probab=99.19  E-value=8.7e-11  Score=86.75  Aligned_cols=69  Identities=22%  Similarity=0.361  Sum_probs=57.2

Q ss_pred             CCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeeh-HHHHHhCCC-----CCCeeEEEecCCC-C--CC-c-ccEEEeec
Q 034578           21 FNNIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDL-QHVIATAPT-----HEGVSHVGGDMFD-A--IP-N-ADAVFMKV   89 (90)
Q Consensus        21 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~-----~~rv~~~~~d~~~-~--~p-~-~D~i~l~~   89 (90)
                      +.+..+|||+|||+|.++..+++.+|+.+++++|+ +.|++.+++     ..+++++.+|..+ +  ++ . +|+|+++.
T Consensus       416 ~~~g~rVLDIGCGTG~ls~~LA~~~P~~kVtGIDIS~~MLe~Ararl~~~g~~ie~I~gDa~dLp~~fedeSFDvVVsn~  495 (677)
T PRK06922        416 YIKGDTIVDVGAGGGVMLDMIEEETEDKRIYGIDISENVIDTLKKKKQNEGRSWNVIKGDAINLSSSFEKESVDTIVYSS  495 (677)
T ss_pred             hcCCCEEEEeCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcCCCeEEEEcchHhCccccCCCCEEEEEEch
Confidence            34568999999999999999999999999999999 899988765     2467888899876 3  43 3 89999764

>TIGR00537 hemK_rel_arch HemK-related putative methylase

Probab=99.18  E-value=1.1e-10  Score=73.84  Aligned_cols=64  Identities=17%  Similarity=0.321  Sum_probs=53.6

Q ss_pred             CCCeEEEecCCchHHHHHHHHHCCCCeEEEeeh-HHHHHhCCCC-----CCeeEEEecCCCCCC-cccEEEee
Q 034578           23 NIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDL-QHVIATAPTH-----EGVSHVGGDMFDAIP-NADAVFMK   88 (90)
Q Consensus        23 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~-----~rv~~~~~d~~~~~p-~~D~i~l~   88 (90)
                      +..+|||+|||+|.++..+++..+  +++++|+ |.+++.++++     .+++++.+|+++..+ .+|+|+++
T Consensus        19 ~~~~vLdlG~G~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~fD~Vi~n   89 (179)
T TIGR00537        19 KPDDVLEIGAGTGLVAIRLKGKGK--CILTTDINPFAVKELRENAKLNNVGLDVVMTDLFKGVRGKFDVILFN   89 (179)
T ss_pred             CCCeEEEeCCChhHHHHHHHhcCC--EEEEEECCHHHHHHHHHHHHHcCCceEEEEcccccccCCcccEEEEC
Confidence            357899999999999999999876  8999999 9999887752     468889999987444 49999875

The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.

>PLN02672 methionine S-methyltransferase

Probab=99.17  E-value=1.2e-10  Score=89.81  Aligned_cols=83  Identities=12%  Similarity=0.145  Sum_probs=63.5

Q ss_pred             chhhhHHHHHhhcccCCCCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeeh-HHHHHhCCCC-----------------
Q 034578            4 TTKITMKAFVSHYKVDGFNNIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDL-QHVIATAPTH-----------------   65 (90)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~-----------------   65 (90)
                      .++.+++. ++..+.. .-+..+|+|+|||+|.+++.+++++|..+++++|+ |.+++.|+++                 
T Consensus       101 eTE~lve~-L~~~~~~-~~~~~~VLDlG~GSG~Iai~La~~~~~~~v~avDis~~Al~~A~~Na~~n~l~~~~~~~~~~~  178 (1082)
T PLN02672        101 WSFTFYEG-LNRHPDS-IFRDKTVAELGCGNGWISIAIAEKWLPSKVYGLDINPRAVKVAWINLYLNALDDDGLPVYDGE  178 (1082)
T ss_pred             hHHHHHHH-HHhcccc-cCCCCEEEEEecchHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCcccccccccccc
Confidence            45566666 4433310 11246899999999999999999999999999999 9999887431                 


Q ss_pred             -----CCeeEEEecCCCCCC----cccEEEee
Q 034578           66 -----EGVSHVGGDMFDAIP----NADAVFMK   88 (90)
Q Consensus        66 -----~rv~~~~~d~~~~~p----~~D~i~l~   88 (90)
                           +|++|+.+|+++.++    .+|+|+.+
T Consensus       179 ~~~l~~rV~f~~sDl~~~~~~~~~~fDlIVSN  210 (1082)
T PLN02672        179 GKTLLDRVEFYESDLLGYCRDNNIELDRIVGC  210 (1082)
T ss_pred             cccccccEEEEECchhhhccccCCceEEEEEC
Confidence                 379999999998553    38998864

>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins

Probab=99.16  E-value=6.5e-11  Score=76.12  Aligned_cols=66  Identities=24%  Similarity=0.466  Sum_probs=53.4

Q ss_pred             CCCCeEEEecCCchHHHHHHHHHCCCCeEEEeeh-HHHHHhCCCCCCeeEEEecCCCC---CCc--ccEEEeec
Q 034578           22 NNIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDL-QHVIATAPTHEGVSHVGGDMFDA---IPN--ADAVFMKV   89 (90)
Q Consensus        22 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~~rv~~~~~d~~~~---~p~--~D~i~l~~   89 (90)
                      ++..+|||+|||.|.++..|.+. .++++.++|+ ++-+..+.++ -++++++|+.+.   +|+  ||.|+|++
T Consensus        12 ~pgsrVLDLGCGdG~LL~~L~~~-k~v~g~GvEid~~~v~~cv~r-Gv~Viq~Dld~gL~~f~d~sFD~VIlsq   83 (193)
T PF07021_consen   12 EPGSRVLDLGCGDGELLAYLKDE-KQVDGYGVEIDPDNVAACVAR-GVSVIQGDLDEGLADFPDQSFDYVILSQ   83 (193)
T ss_pred             CCCCEEEecCCCchHHHHHHHHh-cCCeEEEEecCHHHHHHHHHc-CCCEEECCHHHhHhhCCCCCccEEehHh
Confidence            46789999999999999888885 6999999999 7766655443 377899999873   554  89999985

Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].

>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase

Probab=99.15  E-value=2.3e-10  Score=74.41  Aligned_cols=65  Identities=20%  Similarity=0.241  Sum_probs=53.5

Q ss_pred             CCCeEEEecCCchHHHHHHHHHCCCCeEEEeeh-HHHHHhCCCC-------CCeeEEEecCCCCCCcccEEEeec
Q 034578           23 NIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDL-QHVIATAPTH-------EGVSHVGGDMFDAIPNADAVFMKV   89 (90)
Q Consensus        23 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~-------~rv~~~~~d~~~~~p~~D~i~l~~   89 (90)
                      +..++||+|||+|.++..+++.  ..+++++|+ |.+++.++++       .++++..+|+.+....+|+|++..
T Consensus        55 ~~~~vLDiGcG~G~~~~~la~~--~~~v~gvD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~~fD~ii~~~  127 (219)
T TIGR02021        55 KGKRVLDAGCGTGLLSIELAKR--GAIVKAVDISEQMVQMARNRAQGRDVAGNVEFEVNDLLSLCGEFDIVVCMD  127 (219)
T ss_pred             CCCEEEEEeCCCCHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECChhhCCCCcCEEEEhh
Confidence            4689999999999999999886  458999999 9999888651       479999999876334599998753

This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.

>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase

Probab=99.15  E-value=8.6e-11  Score=75.48  Aligned_cols=66  Identities=18%  Similarity=0.411  Sum_probs=55.3

Q ss_pred             CCCeEEEecCCchHHHHHHHHHCCCCeEEEeeh-HHHHHhCCC------CCCeeEEEecCCC-C---CCc--ccEEEee
Q 034578           23 NIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDL-QHVIATAPT------HEGVSHVGGDMFD-A---IPN--ADAVFMK   88 (90)
Q Consensus        23 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~------~~rv~~~~~d~~~-~---~p~--~D~i~l~   88 (90)
                      ...++||||||+|.++..+++++|+.+++++|+ +.+++.+++      ..+++++.+|+.+ .   ++.  +|.++++
T Consensus        16 ~~~~ilDiGcG~G~~~~~la~~~p~~~v~gvD~~~~~l~~a~~~~~~~~l~ni~~i~~d~~~~~~~~~~~~~~d~v~~~   94 (194)
T TIGR00091        16 KAPLHLEIGCGKGRFLIDMAKQNPDKNFLGIEIHTPIVLAANNKANKLGLKNLHVLCGDANELLDKFFPDGSLSKVFLN   94 (194)
T ss_pred             CCceEEEeCCCccHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHhCCCCEEEEccCHHHHHHhhCCCCceeEEEEE
Confidence            456899999999999999999999999999999 888887754      2589999999865 1   332  7888875

In E. coli, this protein flanks the DNA repair protein MutY, also called micA.

>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed

Probab=99.15  E-value=9.1e-11  Score=75.88  Aligned_cols=66  Identities=21%  Similarity=0.384  Sum_probs=55.1

Q ss_pred             CCCeEEEecCCchHHHHHHHHHCCCCeEEEeeh-HHHHHhCCC------CCCeeEEEecC-CC-C--CC-c-ccEEEee
Q 034578           23 NIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDL-QHVIATAPT------HEGVSHVGGDM-FD-A--IP-N-ADAVFMK   88 (90)
Q Consensus        23 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~------~~rv~~~~~d~-~~-~--~p-~-~D~i~l~   88 (90)
                      ...+|||+|||+|.++..+++.+|+.+++++|+ |.+++.+++      ..+++++.+|+ .. +  ++ . +|+|++.
T Consensus        40 ~~~~VLDiGcGtG~~~~~la~~~p~~~v~gVD~s~~~i~~a~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~D~V~~~  118 (202)
T PRK00121         40 DAPIHLEIGFGKGEFLVEMAKANPDINFIGIEVHEPGVGKALKKIEEEGLTNLRLLCGDAVEVLLDMFPDGSLDRIYLN  118 (202)
T ss_pred             CCCeEEEEccCCCHHHHHHHHHCCCccEEEEEechHHHHHHHHHHHHcCCCCEEEEecCHHHHHHHHcCccccceEEEE
Confidence            357899999999999999999999999999999 999988764      26799999998 32 2  43 2 8999874

>PHA03411 putative methyltransferase; Provisional

Probab=99.14  E-value=1.5e-10  Score=78.10  Aligned_cols=66  Identities=14%  Similarity=0.166  Sum_probs=56.9

Q ss_pred             CCCeEEEecCCchHHHHHHHHHCCCCeEEEeeh-HHHHHhCCCC-CCeeEEEecCCCCC-Cc-ccEEEee
Q 034578           23 NIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDL-QHVIATAPTH-EGVSHVGGDMFDAI-PN-ADAVFMK   88 (90)
Q Consensus        23 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~-~rv~~~~~d~~~~~-p~-~D~i~l~   88 (90)
                      ...+|||+|||+|.++..++++.+..+++++|+ |.+++.++++ ++++++.+|+++.. +. +|+|+.+
T Consensus        64 ~~grVLDLGcGsGilsl~la~r~~~~~V~gVDisp~al~~Ar~n~~~v~~v~~D~~e~~~~~kFDlIIsN  133 (279)
T PHA03411         64 CTGKVLDLCAGIGRLSFCMLHRCKPEKIVCVELNPEFARIGKRLLPEAEWITSDVFEFESNEKFDVVISN  133 (279)
T ss_pred             cCCeEEEcCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhCcCCEEEECchhhhcccCCCcEEEEc
Confidence            357899999999999999999888889999999 9999988774 67999999998843 33 9999874

>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A

Probab=99.14  E-value=9.8e-11  Score=68.95  Aligned_cols=63  Identities=22%  Similarity=0.373  Sum_probs=53.6

Q ss_pred             CeEEEecCCchHHHHHHHHHCCCCeEEEeeh-HHHHHhCCC-------CCCeeEEEecCCC-C--CC--cccEEEee
Q 034578           25 RSMVDVGGGTGTVLAEIVKSYPHIKGINFDL-QHVIATAPT-------HEGVSHVGGDMFD-A--IP--NADAVFMK   88 (90)
Q Consensus        25 ~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~-------~~rv~~~~~d~~~-~--~p--~~D~i~l~   88 (90)
                      .+|||+|||+|.++..+++.. ..+++++|+ |.+++.+++       .+|++++.+|+++ .  ++  .+|+|+++
T Consensus         2 ~~vlD~~~G~G~~~~~~~~~~-~~~~~gvdi~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~D~Iv~n   77 (117)
T PF13659_consen    2 DRVLDPGCGSGTFLLAALRRG-AARVTGVDIDPEAVELARRNLPRNGLDDRVEVIVGDARDLPEPLPDGKFDLIVTN   77 (117)
T ss_dssp             EEEEEETSTTCHHHHHHHHHC-TCEEEEEESSHHHHHHHHHHCHHCTTTTTEEEEESHHHHHHHTCTTT-EEEEEE-
T ss_pred             CEEEEcCcchHHHHHHHHHHC-CCeEEEEEECHHHHHHHHHHHHHccCCceEEEEECchhhchhhccCceeEEEEEC
Confidence            479999999999999999998 899999999 999888765       3689999999987 2  43  39999975

...

>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4)

Probab=99.13  E-value=1.5e-10  Score=78.10  Aligned_cols=79  Identities=14%  Similarity=0.126  Sum_probs=55.6

Q ss_pred             hhhhHHHHHhhcccCCCCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeeh-HHHHHhCCC-------CCCeeEEEecCC
Q 034578            5 TKITMKAFVSHYKVDGFNNIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDL-QHVIATAPT-------HEGVSHVGGDMF   76 (90)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~-------~~rv~~~~~d~~   76 (90)
                      +....+.+++.++   +.+..+|||||||.|.++..+++++ +++++++.+ ++-.+.+++       .+++++...|+.
T Consensus        47 Q~~k~~~~~~~~~---l~~G~~vLDiGcGwG~~~~~~a~~~-g~~v~gitlS~~Q~~~a~~~~~~~gl~~~v~v~~~D~~  122 (273)
T PF02353_consen   47 QERKLDLLCEKLG---LKPGDRVLDIGCGWGGLAIYAAERY-GCHVTGITLSEEQAEYARERIREAGLEDRVEVRLQDYR  122 (273)
T ss_dssp             HHHHHHHHHTTTT-----TT-EEEEES-TTSHHHHHHHHHH---EEEEEES-HHHHHHHHHHHHCSTSSSTEEEEES-GG
T ss_pred             HHHHHHHHHHHhC---CCCCCEEEEeCCCccHHHHHHHHHc-CcEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEeecc
Confidence            4455677788887   7788999999999999999999998 799999998 776665543       368999999987


Q ss_pred             CCCCcccEEEe
Q 034578           77 DAIPNADAVFM   87 (90)
Q Consensus        77 ~~~p~~D~i~l   87 (90)
                      +--+.||.|+.
T Consensus       123 ~~~~~fD~IvS  133 (273)
T PF02353_consen  123 DLPGKFDRIVS  133 (273)
T ss_dssp             G---S-SEEEE
T ss_pred             ccCCCCCEEEE
Confidence            62235998874

All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....

>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional

Probab=99.12  E-value=3.2e-10  Score=78.02  Aligned_cols=75  Identities=16%  Similarity=0.150  Sum_probs=55.6

Q ss_pred             HHHhhcccCCCCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeeh-HHHHHhCC-------CCCCeeEEEecCCC-CCCc
Q 034578           11 AFVSHYKVDGFNNIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDL-QHVIATAP-------THEGVSHVGGDMFD-AIPN   81 (90)
Q Consensus        11 ~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~-------~~~rv~~~~~d~~~-~~p~   81 (90)
                      .++..++   .....+|||||||+|.++..+++..+. +++++|. +.++.+++       ...+++++.+|+.+ +.+.
T Consensus       113 ~l~~~l~---~l~g~~VLDIGCG~G~~~~~la~~g~~-~V~GiD~S~~~l~q~~a~~~~~~~~~~i~~~~~d~e~lp~~~  188 (322)
T PRK15068        113 RVLPHLS---PLKGRTVLDVGCGNGYHMWRMLGAGAK-LVVGIDPSQLFLCQFEAVRKLLGNDQRAHLLPLGIEQLPALK  188 (322)
T ss_pred             HHHHhhC---CCCCCEEEEeccCCcHHHHHHHHcCCC-EEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEeCCHHHCCCcC
Confidence            3444554   234579999999999999999998765 5999998 76665432       13579999999876 4444


Q ss_pred             -ccEEEeec
Q 034578           82 -ADAVFMKV   89 (90)
Q Consensus        82 -~D~i~l~~   89 (90)
                       ||+|++..
T Consensus       189 ~FD~V~s~~  197 (322)
T PRK15068        189 AFDTVFSMG  197 (322)
T ss_pred             CcCEEEECC
Confidence             99998753

>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins

Probab=99.12  E-value=1.7e-10  Score=74.53  Aligned_cols=72  Identities=15%  Similarity=0.232  Sum_probs=55.4

Q ss_pred             hhcccCCCCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeeh-HHHHHhCCC----CCCeeEEEecCCCCCCc--ccEEE
Q 034578           14 SHYKVDGFNNIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDL-QHVIATAPT----HEGVSHVGGDMFDAIPN--ADAVF   86 (90)
Q Consensus        14 ~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~----~~rv~~~~~d~~~~~p~--~D~i~   86 (90)
                      ..++   -....+++|+|||.|.++..|+.++  -+++++|+ |.+++.|++    .+++++...|+.+..|.  ||+|+
T Consensus        37 aaLp---~~ry~~alEvGCs~G~lT~~LA~rC--d~LlavDis~~Al~~Ar~Rl~~~~~V~~~~~dvp~~~P~~~FDLIV  111 (201)
T PF05401_consen   37 AALP---RRRYRRALEVGCSIGVLTERLAPRC--DRLLAVDISPRALARARERLAGLPHVEWIQADVPEFWPEGRFDLIV  111 (201)
T ss_dssp             HHHT---TSSEEEEEEE--TTSHHHHHHGGGE--EEEEEEES-HHHHHHHHHHTTT-SSEEEEES-TTT---SS-EEEEE
T ss_pred             HhcC---ccccceeEecCCCccHHHHHHHHhh--CceEEEeCCHHHHHHHHHhcCCCCCeEEEECcCCCCCCCCCeeEEE
Confidence            3566   4567899999999999999999996  46899999 999999875    48899999999886554  99999


Q ss_pred             eecC
Q 034578           87 MKVA   90 (90)
Q Consensus        87 l~~v   90 (90)
                      ++-|
T Consensus       112 ~SEV  115 (201)
T PF05401_consen  112 LSEV  115 (201)
T ss_dssp             EES-
T ss_pred             EehH
Confidence            9854

The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.

>PHA03412 putative methyltransferase; Provisional

Probab=99.12  E-value=2.5e-10  Score=75.67  Aligned_cols=66  Identities=14%  Similarity=0.145  Sum_probs=56.1

Q ss_pred             CCCeEEEecCCchHHHHHHHHHC---CCCeEEEeeh-HHHHHhCCCC-CCeeEEEecCCC-CCC-cccEEEee
Q 034578           23 NIRSMVDVGGGTGTVLAEIVKSY---PHIKGINFDL-QHVIATAPTH-EGVSHVGGDMFD-AIP-NADAVFMK   88 (90)
Q Consensus        23 ~~~~vlDvG~G~G~~~~~l~~~~---p~~~~~~~D~-p~~~~~a~~~-~rv~~~~~d~~~-~~p-~~D~i~l~   88 (90)
                      ...+|||+|||+|.++..++++.   +..+++++|+ +.+++.|+++ .++.++.+|+.. .+. .+|+|+.+
T Consensus        49 ~~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~~Ar~n~~~~~~~~~D~~~~~~~~~FDlIIsN  121 (241)
T PHA03412         49 TSGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYKLGKRIVPEATWINADALTTEFDTLFDMAISN  121 (241)
T ss_pred             CCCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHHHHHhhccCCEEEEcchhcccccCCccEEEEC
Confidence            35799999999999999999875   4678999999 9999999875 679999999986 344 39999875

>TIGR00755 ksgA dimethyladenosine transferase

Probab=99.12  E-value=3.4e-10  Score=75.31  Aligned_cols=79  Identities=11%  Similarity=0.224  Sum_probs=61.3

Q ss_pred             hhhHHHHHhhcccCCCCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeeh-HHHHHhCCC----CCCeeEEEecCCC-CC
Q 034578            6 KITMKAFVSHYKVDGFNNIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDL-QHVIATAPT----HEGVSHVGGDMFD-AI   79 (90)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~----~~rv~~~~~d~~~-~~   79 (90)
                      ..+.+.+++..+   ..+..+|||+|||+|.++..++++.+.  ++++|. +.+++.+++    .++++++.+|+.+ ++
T Consensus        15 ~~i~~~i~~~~~---~~~~~~VLEiG~G~G~lt~~L~~~~~~--v~~iE~d~~~~~~l~~~~~~~~~v~v~~~D~~~~~~   89 (253)
T TIGR00755        15 ESVIQKIVEAAN---VLEGDVVLEIGPGLGALTEPLLKRAKK--VTAIEIDPRLAEILRKLLSLYERLEVIEGDALKVDL   89 (253)
T ss_pred             HHHHHHHHHhcC---CCCcCEEEEeCCCCCHHHHHHHHhCCc--EEEEECCHHHHHHHHHHhCcCCcEEEEECchhcCCh
Confidence            345677777776   566789999999999999999999864  888998 888887764    3689999999988 45


Q ss_pred             Cccc--EEEeec
Q 034578           80 PNAD--AVFMKV   89 (90)
Q Consensus        80 p~~D--~i~l~~   89 (90)
                      +.+|  .+++++
T Consensus        90 ~~~d~~~~vvsN  101 (253)
T TIGR00755        90 PDFPKQLKVVSN  101 (253)
T ss_pred             hHcCCcceEEEc
Confidence            5455  344444

Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase

>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases

Probab=99.11  E-value=6.6e-10  Score=71.59  Aligned_cols=77  Identities=22%  Similarity=0.255  Sum_probs=60.8

Q ss_pred             HHHHhhcccCCCCCCCeEEEecCCchHHHHHHHHHCCC-CeEEEeeh-HHHHHhCCC----CCCeeEEEecCCC-CCC--
Q 034578           10 KAFVSHYKVDGFNNIRSMVDVGGGTGTVLAEIVKSYPH-IKGINFDL-QHVIATAPT----HEGVSHVGGDMFD-AIP--   80 (90)
Q Consensus        10 ~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~-~~~~~~D~-p~~~~~a~~----~~rv~~~~~d~~~-~~p--   80 (90)
                      ..+++.+.   ..+..+|||+|||+|.++..+++..|. .+++++|+ |.+++.+++    ..+++++.+|+.+ +.+  
T Consensus        29 ~~~~~~~~---~~~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~  105 (223)
T TIGR01934        29 RRAVKLIG---VFKGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAKKKSELPLNIEFIQADAEALPFEDN  105 (223)
T ss_pred             HHHHHHhc---cCCCCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHHHHHHhccCCCceEEecchhcCCCCCC
Confidence            34455554   345689999999999999999999987 79999999 888877765    2578999999987 443  


Q ss_pred             cccEEEeec
Q 034578           81 NADAVFMKV   89 (90)
Q Consensus        81 ~~D~i~l~~   89 (90)
                      .+|+|+++.
T Consensus       106 ~~D~i~~~~  114 (223)
T TIGR01934       106 SFDAVTIAF  114 (223)
T ss_pred             cEEEEEEee
Confidence            399998753

Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.

>KOG2904 consensus Predicted methyltransferase [General function prediction only]

Probab=99.11  E-value=2.9e-10  Score=76.67  Aligned_cols=84  Identities=15%  Similarity=0.255  Sum_probs=63.6

Q ss_pred             hhhhHHHHHhhcccCCCCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeeh-HHHHHhCCC-------CCCeeEE----E
Q 034578            5 TKITMKAFVSHYKVDGFNNIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDL-QHVIATAPT-------HEGVSHV----G   72 (90)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~-------~~rv~~~----~   72 (90)
                      ++..++.+++............+||+|||+|+++..++...|+.+++++|. +.+++.|.+       .+++..+    .
T Consensus       130 TEE~V~~Vid~~~~~~~~~~~~ildlgtGSGaIslsll~~L~~~~v~AiD~S~~Ai~La~eN~qr~~l~g~i~v~~~~me  209 (328)
T KOG2904|consen  130 TEEWVEAVIDALNNSEHSKHTHILDLGTGSGAISLSLLHGLPQCTVTAIDVSKAAIKLAKENAQRLKLSGRIEVIHNIME  209 (328)
T ss_pred             HHHHHHHHHHHHhhhhhcccceEEEecCCccHHHHHHHhcCCCceEEEEeccHHHHHHHHHHHHHHhhcCceEEEecccc
Confidence            456677777766532234556899999999999999999999999999999 888888876       3777777    4


Q ss_pred             ecCCCCC--C-c-ccEEEee
Q 034578           73 GDMFDAI--P-N-ADAVFMK   88 (90)
Q Consensus        73 ~d~~~~~--p-~-~D~i~l~   88 (90)
                      .|.+.+.  + + .|+++.+
T Consensus       210 ~d~~~~~~l~~~~~dllvsN  229 (328)
T KOG2904|consen  210 SDASDEHPLLEGKIDLLVSN  229 (328)
T ss_pred             cccccccccccCceeEEecC
Confidence            5555533  2 2 7887654

>PRK12335 tellurite resistance protein TehB; Provisional

Probab=99.11  E-value=3.9e-10  Score=76.31  Aligned_cols=65  Identities=15%  Similarity=0.149  Sum_probs=52.5

Q ss_pred             CCCeEEEecCCchHHHHHHHHHCCCCeEEEeeh-HHHHHhCCC-----CCCeeEEEecCCC-CCCc-ccEEEeec
Q 034578           23 NIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDL-QHVIATAPT-----HEGVSHVGGDMFD-AIPN-ADAVFMKV   89 (90)
Q Consensus        23 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~-----~~rv~~~~~d~~~-~~p~-~D~i~l~~   89 (90)
                      +..++||+|||+|..+..+++.  ..+++++|. +.+++.+++     .-++++...|+.+ .+++ +|+|+...
T Consensus       120 ~~~~vLDlGcG~G~~~~~la~~--g~~V~avD~s~~ai~~~~~~~~~~~l~v~~~~~D~~~~~~~~~fD~I~~~~  192 (287)
T PRK12335        120 KPGKALDLGCGQGRNSLYLALL--GFDVTAVDINQQSLENLQEIAEKENLNIRTGLYDINSASIQEEYDFILSTV  192 (287)
T ss_pred             CCCCEEEeCCCCCHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHHcCCceEEEEechhcccccCCccEEEEcc
Confidence            4569999999999999999985  579999999 999887754     2368888888876 3454 99998764

>KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism]

Probab=99.09  E-value=7.5e-10  Score=74.04  Aligned_cols=66  Identities=27%  Similarity=0.380  Sum_probs=57.6

Q ss_pred             CCCeEEEecCCchHHHHHHHHHCCC------CeEEEeeh-HHHHHhCCC---------CCCeeEEEecCCC-CCCc--cc
Q 034578           23 NIRSMVDVGGGTGTVLAEIVKSYPH------IKGINFDL-QHVIATAPT---------HEGVSHVGGDMFD-AIPN--AD   83 (90)
Q Consensus        23 ~~~~vlDvG~G~G~~~~~l~~~~p~------~~~~~~D~-p~~~~~a~~---------~~rv~~~~~d~~~-~~p~--~D   83 (90)
                      ...++||++||||-++-.+++..+.      .+++++|+ |+|++.+++         ..++.|+.+|..+ |+|.  +|
T Consensus       100 ~~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Dinp~mL~vgkqRa~~~~l~~~~~~~w~~~dAE~LpFdd~s~D  179 (296)
T KOG1540|consen  100 KGMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDINPHMLAVGKQRAKKRPLKASSRVEWVEGDAEDLPFDDDSFD  179 (296)
T ss_pred             CCCeEEEecCCcchhHHHHHHhhccccCCCCceEEEEeCCHHHHHHHHHHHhhcCCCcCCceEEEeCCcccCCCCCCcce
Confidence            4478999999999999999999887      89999999 999988764         2569999999988 7775  89


Q ss_pred             EEEee
Q 034578           84 AVFMK   88 (90)
Q Consensus        84 ~i~l~   88 (90)
                      .|+++
T Consensus       180 ~yTia  184 (296)
T KOG1540|consen  180 AYTIA  184 (296)
T ss_pred             eEEEe
Confidence            99985

>PLN03075 nicotianamine synthase; Provisional

Probab=99.09  E-value=6.3e-10  Score=75.85  Aligned_cols=66  Identities=20%  Similarity=0.211  Sum_probs=52.8

Q ss_pred             CCCeEEEecCCchHHHHH--HHHHCCCCeEEEeeh-HHHHHhCCC--------CCCeeEEEecCCCCC---CcccEEEee
Q 034578           23 NIRSMVDVGGGTGTVLAE--IVKSYPHIKGINFDL-QHVIATAPT--------HEGVSHVGGDMFDAI---PNADAVFMK   88 (90)
Q Consensus        23 ~~~~vlDvG~G~G~~~~~--l~~~~p~~~~~~~D~-p~~~~~a~~--------~~rv~~~~~d~~~~~---p~~D~i~l~   88 (90)
                      ++++|+|||||.|-++..  +++.+|+.+++++|+ |.+++.|++        .+|++|..+|..+..   .+||+|++.
T Consensus       123 ~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~~gL~~rV~F~~~Da~~~~~~l~~FDlVF~~  202 (296)
T PLN03075        123 VPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSDPDLSKRMFFHTADVMDVTESLKEYDVVFLA  202 (296)
T ss_pred             CCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhccCccCCcEEEECchhhcccccCCcCEEEEe
Confidence            678999999998854333  345689999999999 999988865        268999999998732   349999975

>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional

Probab=99.08  E-value=6.2e-10  Score=78.30  Aligned_cols=75  Identities=17%  Similarity=0.280  Sum_probs=59.0

Q ss_pred             HHHhhcccCCCCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeeh-HHHHHhCCC------CCCeeEEEecCCC---CCC
Q 034578           11 AFVSHYKVDGFNNIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDL-QHVIATAPT------HEGVSHVGGDMFD---AIP   80 (90)
Q Consensus        11 ~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~------~~rv~~~~~d~~~---~~p   80 (90)
                      .+++.+.   ......+||||||+|.++..+++++|+..++++|+ +.+++.+.+      -+++.++.+|...   .++
T Consensus       113 ~~~~~~~---~~~~p~vLEIGcGsG~~ll~lA~~~P~~~~iGIEI~~~~i~~a~~ka~~~gL~NV~~i~~DA~~ll~~~~  189 (390)
T PRK14121        113 NFLDFIS---KNQEKILIEIGFGSGRHLLYQAKNNPNKLFIGIEIHTPSIEQVLKQIELLNLKNLLIINYDARLLLELLP  189 (390)
T ss_pred             HHHHHhc---CCCCCeEEEEcCcccHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHhhhhCC
Confidence            4455554   23456899999999999999999999999999999 888777643      2689999999743   355


Q ss_pred             c--ccEEEee
Q 034578           81 N--ADAVFMK   88 (90)
Q Consensus        81 ~--~D~i~l~   88 (90)
                      .  +|.|+++
T Consensus       190 ~~s~D~I~ln  199 (390)
T PRK14121        190 SNSVEKIFVH  199 (390)
T ss_pred             CCceeEEEEe
Confidence            3  7998875

>PTZ00338 dimethyladenosine transferase-like protein; Provisional

Probab=99.08  E-value=6.7e-10  Score=75.72  Aligned_cols=76  Identities=16%  Similarity=0.353  Sum_probs=61.3

Q ss_pred             hhHHHHHhhcccCCCCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeeh-HHHHHhCCC-------CCCeeEEEecCCC-
Q 034578            7 ITMKAFVSHYKVDGFNNIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDL-QHVIATAPT-------HEGVSHVGGDMFD-   77 (90)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~-------~~rv~~~~~d~~~-   77 (90)
                      ..++.+++...   ..+..+|||||||+|.++..+++..  .+++++|+ +.+++.+++       .++++++.+|+.+ 
T Consensus        23 ~i~~~Iv~~~~---~~~~~~VLEIG~G~G~LT~~Ll~~~--~~V~avEiD~~li~~l~~~~~~~~~~~~v~ii~~Dal~~   97 (294)
T PTZ00338         23 LVLDKIVEKAA---IKPTDTVLEIGPGTGNLTEKLLQLA--KKVIAIEIDPRMVAELKKRFQNSPLASKLEVIEGDALKT   97 (294)
T ss_pred             HHHHHHHHhcC---CCCcCEEEEecCchHHHHHHHHHhC--CcEEEEECCHHHHHHHHHHHHhcCCCCcEEEEECCHhhh
Confidence            45667777666   5667899999999999999999874  46899998 888887764       3689999999988 


Q ss_pred             CCCcccEEEe
Q 034578           78 AIPNADAVFM   87 (90)
Q Consensus        78 ~~p~~D~i~l   87 (90)
                      +++.+|.++.
T Consensus        98 ~~~~~d~Vva  107 (294)
T PTZ00338         98 EFPYFDVCVA  107 (294)
T ss_pred             cccccCEEEe
Confidence            5666887765

>PRK04266 fibrillarin; Provisional

Probab=99.08  E-value=1.7e-09  Score=71.27  Aligned_cols=67  Identities=9%  Similarity=0.179  Sum_probs=54.1

Q ss_pred             CCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeeh-HHHHH----hCCCCCCeeEEEecCCCC-----CCc-ccEEEe
Q 034578           21 FNNIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDL-QHVIA----TAPTHEGVSHVGGDMFDA-----IPN-ADAVFM   87 (90)
Q Consensus        21 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~----~a~~~~rv~~~~~d~~~~-----~p~-~D~i~l   87 (90)
                      ..+..+|||+|||+|.++..+++..+..+++++|+ |.|++    .+++..++.++.+|..++     +++ +|+++.
T Consensus        70 i~~g~~VlD~G~G~G~~~~~la~~v~~g~V~avD~~~~ml~~l~~~a~~~~nv~~i~~D~~~~~~~~~l~~~~D~i~~  147 (226)
T PRK04266         70 IKKGSKVLYLGAASGTTVSHVSDIVEEGVVYAVEFAPRPMRELLEVAEERKNIIPILADARKPERYAHVVEKVDVIYQ  147 (226)
T ss_pred             CCCCCEEEEEccCCCHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHhhhcCCcEEEECCCCCcchhhhccccCCEEEE
Confidence            55678999999999999999999988778999999 87766    444457799999998652     233 899874

>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated

Probab=99.07  E-value=7.4e-10  Score=72.05  Aligned_cols=66  Identities=17%  Similarity=0.221  Sum_probs=52.1

Q ss_pred             CCCCeEEEecCCchHHHHHHHHHCCCCeEEEeeh-HHHHHhCCCC-------CCeeEEEecCCCCCCcccEEEeec
Q 034578           22 NNIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDL-QHVIATAPTH-------EGVSHVGGDMFDAIPNADAVFMKV   89 (90)
Q Consensus        22 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~-------~rv~~~~~d~~~~~p~~D~i~l~~   89 (90)
                      .+..+|||||||+|.++..+++..  .+++++|+ +.+++.+++.       +++++..+|+......+|+|++..
T Consensus        62 ~~~~~vLDvGcG~G~~~~~l~~~~--~~v~~~D~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~~fD~v~~~~  135 (230)
T PRK07580         62 LTGLRILDAGCGVGSLSIPLARRG--AKVVASDISPQMVEEARERAPEAGLAGNITFEVGDLESLLGRFDTVVCLD  135 (230)
T ss_pred             CCCCEEEEEeCCCCHHHHHHHHcC--CEEEEEECCHHHHHHHHHHHHhcCCccCcEEEEcCchhccCCcCEEEEcc
Confidence            345799999999999999999875  45999999 9999888651       479999999533323499998754

>PRK14967 putative methyltransferase; Provisional

Probab=99.07  E-value=8.1e-10  Score=72.25  Aligned_cols=67  Identities=18%  Similarity=0.215  Sum_probs=53.6

Q ss_pred             CCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeeh-HHHHHhCCCC-----CCeeEEEecCCCCCC--cccEEEee
Q 034578           21 FNNIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDL-QHVIATAPTH-----EGVSHVGGDMFDAIP--NADAVFMK   88 (90)
Q Consensus        21 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~-----~rv~~~~~d~~~~~p--~~D~i~l~   88 (90)
                      ..+..+|||+|||+|.++..+++. +..+++++|+ |.+++.++++     .+++++.+|+.+.++  .+|+|+++
T Consensus        34 ~~~~~~vLDlGcG~G~~~~~la~~-~~~~v~~vD~s~~~l~~a~~n~~~~~~~~~~~~~d~~~~~~~~~fD~Vi~n  108 (223)
T PRK14967         34 LGPGRRVLDLCTGSGALAVAAAAA-GAGSVTAVDISRRAVRSARLNALLAGVDVDVRRGDWARAVEFRPFDVVVSN  108 (223)
T ss_pred             cCCCCeEEEecCCHHHHHHHHHHc-CCCeEEEEECCHHHHHHHHHHHHHhCCeeEEEECchhhhccCCCeeEEEEC
Confidence            345579999999999999999886 3458999999 9998877652     358899999987544  39999975

>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional

Probab=99.07  E-value=1.2e-09  Score=70.28  Aligned_cols=72  Identities=21%  Similarity=0.300  Sum_probs=57.7

Q ss_pred             HhhcccCCCCCCCeEEEecCCchHHHHHHHHHC-CCCeEEEeeh-HHHHHhCCC-------CCCeeEEEecCCCC---C-
Q 034578           13 VSHYKVDGFNNIRSMVDVGGGTGTVLAEIVKSY-PHIKGINFDL-QHVIATAPT-------HEGVSHVGGDMFDA---I-   79 (90)
Q Consensus        13 ~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~-p~~~~~~~D~-p~~~~~a~~-------~~rv~~~~~d~~~~---~-   79 (90)
                      +..++   ..+..+++|+|||+|.++..+++.. +..+++++|+ |.+++.+++       .++++++.+|+.+.   . 
T Consensus        33 l~~l~---~~~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~~g~~~~v~~~~~d~~~~l~~~~  109 (198)
T PRK00377         33 LSKLR---LRKGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKFGVLNNIVLIKGEAPEILFTIN  109 (198)
T ss_pred             HHHcC---CCCcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhCCCCCeEEEEechhhhHhhcC
Confidence            45555   5667899999999999999998874 6789999999 999987764       25789999998762   3 


Q ss_pred             CcccEEEe
Q 034578           80 PNADAVFM   87 (90)
Q Consensus        80 p~~D~i~l   87 (90)
                      +.+|.|++
T Consensus       110 ~~~D~V~~  117 (198)
T PRK00377        110 EKFDRIFI  117 (198)
T ss_pred             CCCCEEEE
Confidence            34899987

>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed

Probab=99.07  E-value=1.4e-09  Score=70.44  Aligned_cols=77  Identities=14%  Similarity=0.213  Sum_probs=59.3

Q ss_pred             hhHHHHHhhcccCCCCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeeh-HHHHHhCCCC------CCeeEEEecCCCCC
Q 034578            7 ITMKAFVSHYKVDGFNNIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDL-QHVIATAPTH------EGVSHVGGDMFDAI   79 (90)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~------~rv~~~~~d~~~~~   79 (90)
                      .....+++.++   ..+..+|||+|||+|.++..+++..  .+++++|. +.+++.++++      .+++++.+|..+.+
T Consensus        65 ~~~~~l~~~l~---~~~~~~VLeiG~GsG~~t~~la~~~--~~v~~vd~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~  139 (212)
T PRK00312         65 YMVARMTELLE---LKPGDRVLEIGTGSGYQAAVLAHLV--RRVFSVERIKTLQWEAKRRLKQLGLHNVSVRHGDGWKGW  139 (212)
T ss_pred             HHHHHHHHhcC---CCCCCEEEEECCCccHHHHHHHHHh--CEEEEEeCCHHHHHHHHHHHHHCCCCceEEEECCcccCC
Confidence            34455566565   5667899999999999998888775  37999998 9988877652      46999999987744


Q ss_pred             C---cccEEEee
Q 034578           80 P---NADAVFMK   88 (90)
Q Consensus        80 p---~~D~i~l~   88 (90)
                      +   .||+|++.
T Consensus       140 ~~~~~fD~I~~~  151 (212)
T PRK00312        140 PAYAPFDRILVT  151 (212)
T ss_pred             CcCCCcCEEEEc
Confidence            3   39999875

>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed

Probab=99.07  E-value=6.9e-10  Score=74.24  Aligned_cols=69  Identities=19%  Similarity=0.283  Sum_probs=56.0

Q ss_pred             CCCCCeEEEecCCchHHHHHHHHHC-CCCeEEEeeh-HHHHHhCCC------CCCeeEEEecCCC-CCCc--ccEEEeec
Q 034578           21 FNNIRSMVDVGGGTGTVLAEIVKSY-PHIKGINFDL-QHVIATAPT------HEGVSHVGGDMFD-AIPN--ADAVFMKV   89 (90)
Q Consensus        21 ~~~~~~vlDvG~G~G~~~~~l~~~~-p~~~~~~~D~-p~~~~~a~~------~~rv~~~~~d~~~-~~p~--~D~i~l~~   89 (90)
                      +.+..+|||+|||+|..+..+++.. +..+++++|+ |.+++.+++      .++++++.+|+.+ +++.  +|+|+...
T Consensus        75 ~~~g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~~g~~~v~~~~~d~~~l~~~~~~fD~Vi~~~  154 (272)
T PRK11873         75 LKPGETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKAGYTNVEFRLGEIEALPVADNSVDVIISNC  154 (272)
T ss_pred             CCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHHcCCCCEEEEEcchhhCCCCCCceeEEEEcC
Confidence            3456899999999999888777764 6678999999 999998876      2589999999876 5543  89998654

>PLN02585 magnesium protoporphyrin IX methyltransferase

Probab=99.06  E-value=5.8e-10  Score=76.67  Aligned_cols=65  Identities=17%  Similarity=0.085  Sum_probs=51.3

Q ss_pred             CCCeEEEecCCchHHHHHHHHHCCCCeEEEeeh-HHHHHhCCCC-----------CCeeEEEecCCCCCCcccEEEeec
Q 034578           23 NIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDL-QHVIATAPTH-----------EGVSHVGGDMFDAIPNADAVFMKV   89 (90)
Q Consensus        23 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~-----------~rv~~~~~d~~~~~p~~D~i~l~~   89 (90)
                      +..+|||+|||+|.++..+++.  +.+++++|+ +.|++.++++           .+++|..+|+.+.-..||+|++..
T Consensus       144 ~~~~VLDlGcGtG~~a~~la~~--g~~V~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~f~~~Dl~~l~~~fD~Vv~~~  220 (315)
T PLN02585        144 AGVTVCDAGCGTGSLAIPLALE--GAIVSASDISAAMVAEAERRAKEALAALPPEVLPKFEANDLESLSGKYDTVTCLD  220 (315)
T ss_pred             CCCEEEEecCCCCHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHhcccccccccceEEEEcchhhcCCCcCEEEEcC
Confidence            3579999999999999999986  578999999 9999887652           257888888754223499998653

>TIGR00452 methyltransferase, putative

Probab=99.06  E-value=8.4e-10  Score=75.84  Aligned_cols=76  Identities=14%  Similarity=0.093  Sum_probs=55.6

Q ss_pred             HHHHhhcccCCCCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeeh-HHHHHhCC-------CCCCeeEEEecCCC-CC-
Q 034578           10 KAFVSHYKVDGFNNIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDL-QHVIATAP-------THEGVSHVGGDMFD-AI-   79 (90)
Q Consensus        10 ~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~-------~~~rv~~~~~d~~~-~~-   79 (90)
                      ..++..+.   ..+..+|||||||+|.++..++...+. +++++|. +.++.+++       ...++.+...++.+ +. 
T Consensus       111 ~~~l~~l~---~~~g~~VLDvGCG~G~~~~~~~~~g~~-~v~GiDpS~~ml~q~~~~~~~~~~~~~v~~~~~~ie~lp~~  186 (314)
T TIGR00452       111 DRVLPHLS---PLKGRTILDVGCGSGYHMWRMLGHGAK-SLVGIDPTVLFLCQFEAVRKLLDNDKRAILEPLGIEQLHEL  186 (314)
T ss_pred             HHHHHhcC---CCCCCEEEEeccCCcHHHHHHHHcCCC-EEEEEcCCHHHHHHHHHHHHHhccCCCeEEEECCHHHCCCC
Confidence            34555554   334679999999999999999988764 7999998 77765432       13678888888765 32 


Q ss_pred             CcccEEEeec
Q 034578           80 PNADAVFMKV   89 (90)
Q Consensus        80 p~~D~i~l~~   89 (90)
                      ..||+|++..
T Consensus       187 ~~FD~V~s~g  196 (314)
T TIGR00452       187 YAFDTVFSMG  196 (314)
T ss_pred             CCcCEEEEcc
Confidence            2499998764

Known examples to date are restricted to the proteobacteria.

>PLN02396 hexaprenyldihydroxybenzoate methyltransferase

Probab=99.05  E-value=3.2e-10  Score=78.11  Aligned_cols=65  Identities=17%  Similarity=0.149  Sum_probs=52.5

Q ss_pred             CCCeEEEecCCchHHHHHHHHHCCCCeEEEeeh-HHHHHhCCCC-------CCeeEEEecCCC-CCC--cccEEEeec
Q 034578           23 NIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDL-QHVIATAPTH-------EGVSHVGGDMFD-AIP--NADAVFMKV   89 (90)
Q Consensus        23 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~-------~rv~~~~~d~~~-~~p--~~D~i~l~~   89 (90)
                      ...+|||||||+|.++..+++  ++.+++++|. +.+++.|++.       .+++++.+|+.+ +.+  .||+|++..
T Consensus       131 ~g~~ILDIGCG~G~~s~~La~--~g~~V~GID~s~~~i~~Ar~~~~~~~~~~~i~~~~~dae~l~~~~~~FD~Vi~~~  206 (322)
T PLN02396        131 EGLKFIDIGCGGGLLSEPLAR--MGATVTGVDAVDKNVKIARLHADMDPVTSTIEYLCTTAEKLADEGRKFDAVLSLE  206 (322)
T ss_pred             CCCEEEEeeCCCCHHHHHHHH--cCCEEEEEeCCHHHHHHHHHHHHhcCcccceeEEecCHHHhhhccCCCCEEEEhh
Confidence            346899999999999998886  4689999999 9999988641       479999999865 333  399999754

>TIGR02081 metW methionine biosynthesis protein MetW

Probab=99.05  E-value=8.2e-10  Score=70.74  Aligned_cols=65  Identities=25%  Similarity=0.468  Sum_probs=51.6

Q ss_pred             CCCeEEEecCCchHHHHHHHHHCCCCeEEEeeh-HHHHHhCCCCCCeeEEEecCCC---CCC-c-ccEEEeec
Q 034578           23 NIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDL-QHVIATAPTHEGVSHVGGDMFD---AIP-N-ADAVFMKV   89 (90)
Q Consensus        23 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~~rv~~~~~d~~~---~~p-~-~D~i~l~~   89 (90)
                      +..+|||+|||+|.++..+++. ...+++++|+ +.+++.+++ .+++++.+|+.+   +++ . +|+|++++
T Consensus        13 ~~~~iLDiGcG~G~~~~~l~~~-~~~~~~giD~s~~~i~~a~~-~~~~~~~~d~~~~l~~~~~~sfD~Vi~~~   83 (194)
T TIGR02081        13 PGSRVLDLGCGDGELLALLRDE-KQVRGYGIEIDQDGVLACVA-RGVNVIQGDLDEGLEAFPDKSFDYVILSQ   83 (194)
T ss_pred             CCCEEEEeCCCCCHHHHHHHhc-cCCcEEEEeCCHHHHHHHHH-cCCeEEEEEhhhcccccCCCCcCEEEEhh
Confidence            4568999999999999988875 4567899999 899888765 357888899865   233 2 89999875

This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.

>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed

Probab=99.04  E-value=7.9e-10  Score=78.77  Aligned_cols=78  Identities=9%  Similarity=0.137  Sum_probs=61.0

Q ss_pred             hhhHHHHHhhcccCCCCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeeh-HHHHHhCCCC------CCeeEEEecCCCC
Q 034578            6 KITMKAFVSHYKVDGFNNIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDL-QHVIATAPTH------EGVSHVGGDMFDA   78 (90)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~------~rv~~~~~d~~~~   78 (90)
                      +.+.+.+++.+.   ..+..+|||+|||+|.++..+++..  .+++++|. +.+++.|+++      ++++++.+|+.+.
T Consensus       283 e~l~~~vl~~l~---~~~~~~VLDlgcGtG~~sl~la~~~--~~V~gvD~s~~al~~A~~n~~~~~~~~v~~~~~d~~~~  357 (443)
T PRK13168        283 QKMVARALEWLD---PQPGDRVLDLFCGLGNFTLPLARQA--AEVVGVEGVEAMVERARENARRNGLDNVTFYHANLEED  357 (443)
T ss_pred             HHHHHHHHHHhc---CCCCCEEEEEeccCCHHHHHHHHhC--CEEEEEeCCHHHHHHHHHHHHHcCCCceEEEEeChHHh
Confidence            445566666555   4456799999999999999999885  68999999 9999988762      5799999998652


Q ss_pred             -----CC-c-ccEEEee
Q 034578           79 -----IP-N-ADAVFMK   88 (90)
Q Consensus        79 -----~p-~-~D~i~l~   88 (90)
                           ++ . +|+|++.
T Consensus       358 l~~~~~~~~~fD~Vi~d  374 (443)
T PRK13168        358 FTDQPWALGGFDKVLLD  374 (443)
T ss_pred             hhhhhhhcCCCCEEEEC
Confidence                 22 2 8999874

>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]

Probab=99.02  E-value=1.7e-09  Score=69.40  Aligned_cols=65  Identities=22%  Similarity=0.285  Sum_probs=54.3

Q ss_pred             CCCeEEEecCCchHHHHHHHHHCCCCeEEEeeh-HHHHHhCCCC-----CCeeEEEecCCCCCCcccEEEee
Q 034578           23 NIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDL-QHVIATAPTH-----EGVSHVGGDMFDAIPNADAVFMK   88 (90)
Q Consensus        23 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~-----~rv~~~~~d~~~~~p~~D~i~l~   88 (90)
                      ...+|+|+|||||.+++..+...| .+++++|+ |++++.++++     +++.|+..|..+.-..+|.++|+
T Consensus        45 ~g~~V~DlG~GTG~La~ga~~lGa-~~V~~vdiD~~a~ei~r~N~~~l~g~v~f~~~dv~~~~~~~dtvimN  115 (198)
T COG2263          45 EGKTVLDLGAGTGILAIGAALLGA-SRVLAVDIDPEALEIARANAEELLGDVEFVVADVSDFRGKFDTVIMN  115 (198)
T ss_pred             CCCEEEEcCCCcCHHHHHHHhcCC-cEEEEEecCHHHHHHHHHHHHhhCCceEEEEcchhhcCCccceEEEC
Confidence            356899999999999999988765 57999999 9999998874     68999999997744457888875

>PLN02336 phosphoethanolamine N-methyltransferase

Probab=99.02  E-value=1.4e-09  Score=77.74  Aligned_cols=79  Identities=22%  Similarity=0.300  Sum_probs=60.9

Q ss_pred             hhhHHHHHhhcccCCCCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeeh-HHHHHhCCC----CCCeeEEEecCCC---
Q 034578            6 KITMKAFVSHYKVDGFNNIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDL-QHVIATAPT----HEGVSHVGGDMFD---   77 (90)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~----~~rv~~~~~d~~~---   77 (90)
                      +.....+++.++   ..+..++||+|||+|.++..+++.+  .+++++|+ +.+++.+++    .++++++.+|+.+   
T Consensus        23 ~~~~~~il~~l~---~~~~~~vLDlGcG~G~~~~~la~~~--~~v~giD~s~~~l~~a~~~~~~~~~i~~~~~d~~~~~~   97 (475)
T PLN02336         23 KEERPEILSLLP---PYEGKSVLELGAGIGRFTGELAKKA--GQVIALDFIESVIKKNESINGHYKNVKFMCADVTSPDL   97 (475)
T ss_pred             chhhhHHHhhcC---ccCCCEEEEeCCCcCHHHHHHHhhC--CEEEEEeCCHHHHHHHHHHhccCCceEEEEeccccccc
Confidence            334566677666   4456799999999999999999985  47899999 999987653    3579999999964   


Q ss_pred             CCCc--ccEEEeec
Q 034578           78 AIPN--ADAVFMKV   89 (90)
Q Consensus        78 ~~p~--~D~i~l~~   89 (90)
                      ++|.  +|+|+++.
T Consensus        98 ~~~~~~fD~I~~~~  111 (475)
T PLN02336         98 NISDGSVDLIFSNW  111 (475)
T ss_pred             CCCCCCEEEEehhh
Confidence            3443  89999764

>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB

Probab=99.02  E-value=2.4e-09  Score=69.05  Aligned_cols=75  Identities=12%  Similarity=0.147  Sum_probs=54.7

Q ss_pred             HHHHHhhcccCCCCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeeh-HHHHHhCCC-----CCCeeEEEecCCC-CCCc
Q 034578            9 MKAFVSHYKVDGFNNIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDL-QHVIATAPT-----HEGVSHVGGDMFD-AIPN   81 (90)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~-----~~rv~~~~~d~~~-~~p~   81 (90)
                      .+.+++..+   ..++.++||+|||.|..+..|+++  +..++++|. +.+++.+++     +-.++....|+.+ .+++
T Consensus        19 hs~v~~a~~---~~~~g~~LDlgcG~GRNalyLA~~--G~~VtAvD~s~~al~~l~~~a~~~~l~i~~~~~Dl~~~~~~~   93 (192)
T PF03848_consen   19 HSEVLEAVP---LLKPGKALDLGCGEGRNALYLASQ--GFDVTAVDISPVALEKLQRLAEEEGLDIRTRVADLNDFDFPE   93 (192)
T ss_dssp             -HHHHHHCT---TS-SSEEEEES-TTSHHHHHHHHT--T-EEEEEESSHHHHHHHHHHHHHTT-TEEEEE-BGCCBS-TT
T ss_pred             cHHHHHHHh---hcCCCcEEEcCCCCcHHHHHHHHC--CCeEEEEECCHHHHHHHHHHHhhcCceeEEEEecchhccccC
Confidence            455667777   446789999999999999999998  688999999 877776543     3458899999987 5555


Q ss_pred             -ccEEEee
Q 034578           82 -ADAVFMK   88 (90)
Q Consensus        82 -~D~i~l~   88 (90)
                       +|+|+..
T Consensus        94 ~yD~I~st  101 (192)
T PF03848_consen   94 EYDFIVST  101 (192)
T ss_dssp             TEEEEEEE
T ss_pred             CcCEEEEE
Confidence             9998753

When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.

>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=99.01  E-value=2.8e-09  Score=73.52  Aligned_cols=76  Identities=21%  Similarity=0.346  Sum_probs=59.1

Q ss_pred             HHHHhhcccCCCCCCCeEEEecCCchHHHHHHHHHCCC-CeEEEeeh-HHHHHhCCC------CCCeeEEEecCCCCCC-
Q 034578           10 KAFVSHYKVDGFNNIRSMVDVGGGTGTVLAEIVKSYPH-IKGINFDL-QHVIATAPT------HEGVSHVGGDMFDAIP-   80 (90)
Q Consensus        10 ~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~-~~~~~~D~-p~~~~~a~~------~~rv~~~~~d~~~~~p-   80 (90)
                      ..+++.++   ..+..+|||+|||+|.++..+++..+. .+++++|+ |.+++.|++      .++++++.+|..+.++ 
T Consensus        70 a~ll~~L~---i~~g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~~g~~nV~~i~gD~~~~~~~  146 (322)
T PRK13943         70 ALFMEWVG---LDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRLGIENVIFVCGDGYYGVPE  146 (322)
T ss_pred             HHHHHhcC---CCCCCEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCChhhcccc
Confidence            34455554   556689999999999999999998864 57999999 998887765      2579999999876332 


Q ss_pred             --cccEEEee
Q 034578           81 --NADAVFMK   88 (90)
Q Consensus        81 --~~D~i~l~   88 (90)
                        .+|+|++.
T Consensus       147 ~~~fD~Ii~~  156 (322)
T PRK13943        147 FAPYDVIFVT  156 (322)
T ss_pred             cCCccEEEEC
Confidence              38999874

>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional

Probab=99.01  E-value=2.6e-09  Score=75.06  Aligned_cols=76  Identities=13%  Similarity=0.114  Sum_probs=58.3

Q ss_pred             HHHHHhhcccCCCCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeeh-HHHHHhCCCC---CCeeEEEecCCCCCCcccE
Q 034578            9 MKAFVSHYKVDGFNNIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDL-QHVIATAPTH---EGVSHVGGDMFDAIPNADA   84 (90)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~---~rv~~~~~d~~~~~p~~D~   84 (90)
                      ...+++.+.   ..+..+|||||||+|.++..+++++ +.+++++|+ |.+++.++++   .++++...|+.+.-..+|.
T Consensus       156 ~~~l~~~l~---l~~g~rVLDIGcG~G~~a~~la~~~-g~~V~giDlS~~~l~~A~~~~~~l~v~~~~~D~~~l~~~fD~  231 (383)
T PRK11705        156 LDLICRKLQ---LKPGMRVLDIGCGWGGLARYAAEHY-GVSVVGVTISAEQQKLAQERCAGLPVEIRLQDYRDLNGQFDR  231 (383)
T ss_pred             HHHHHHHhC---CCCCCEEEEeCCCccHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHHhccCeEEEEECchhhcCCCCCE
Confidence            445566665   5667899999999999999999876 579999999 9999888752   3478888887542224899


Q ss_pred             EEee
Q 034578           85 VFMK   88 (90)
Q Consensus        85 i~l~   88 (90)
                      |+..
T Consensus       232 Ivs~  235 (383)
T PRK11705        232 IVSV  235 (383)
T ss_pred             EEEe
Confidence            8753

>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional

Probab=99.00  E-value=9.2e-10  Score=71.34  Aligned_cols=79  Identities=11%  Similarity=0.139  Sum_probs=57.7

Q ss_pred             hhHHHHHhhcccCCCCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeeh-HHHHHhCCCC------CCeeEEEecCCCCC
Q 034578            7 ITMKAFVSHYKVDGFNNIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDL-QHVIATAPTH------EGVSHVGGDMFDAI   79 (90)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~------~rv~~~~~d~~~~~   79 (90)
                      .+.+.+++.+..  .....++||+|||+|.++.+++.+.. .+++++|. |.+++.++++      .+++++.+|+++.+
T Consensus        39 ~v~e~l~~~l~~--~~~~~~vLDl~~GsG~l~l~~lsr~a-~~V~~vE~~~~a~~~a~~Nl~~~~~~~v~~~~~D~~~~l  115 (199)
T PRK10909         39 RVRETLFNWLAP--VIVDARCLDCFAGSGALGLEALSRYA-AGATLLEMDRAVAQQLIKNLATLKAGNARVVNTNALSFL  115 (199)
T ss_pred             HHHHHHHHHHhh--hcCCCEEEEcCCCccHHHHHHHHcCC-CEEEEEECCHHHHHHHHHHHHHhCCCcEEEEEchHHHHH
Confidence            344445554431  23457999999999999998766653 68999999 9988877652      57999999987733


Q ss_pred             ---C-cccEEEee
Q 034578           80 ---P-NADAVFMK   88 (90)
Q Consensus        80 ---p-~~D~i~l~   88 (90)
                         . .+|+|++.
T Consensus       116 ~~~~~~fDlV~~D  128 (199)
T PRK10909        116 AQPGTPHNVVFVD  128 (199)
T ss_pred             hhcCCCceEEEEC
Confidence               2 38999874

>PRK14968 putative methyltransferase; Provisional

Probab=98.99  E-value=2.3e-09  Score=67.58  Aligned_cols=65  Identities=20%  Similarity=0.372  Sum_probs=53.3

Q ss_pred             CCCCeEEEecCCchHHHHHHHHHCCCCeEEEeeh-HHHHHhCCCC-------CC-eeEEEecCCCCCCc--ccEEEee
Q 034578           22 NNIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDL-QHVIATAPTH-------EG-VSHVGGDMFDAIPN--ADAVFMK   88 (90)
Q Consensus        22 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~-------~r-v~~~~~d~~~~~p~--~D~i~l~   88 (90)
                      .+..++||+|||+|.++..++++  ..+++++|+ |.+++.++++       .+ +.++.+|+.+++++  +|+|+++
T Consensus        22 ~~~~~vLd~G~G~G~~~~~l~~~--~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~d~vi~n   97 (188)
T PRK14968         22 KKGDRVLEVGTGSGIVAIVAAKN--GKKVVGVDINPYAVECAKCNAKLNNIRNNGVEVIRSDLFEPFRGDKFDVILFN   97 (188)
T ss_pred             cCCCEEEEEccccCHHHHHHHhh--cceEEEEECCHHHHHHHHHHHHHcCCCCcceEEEeccccccccccCceEEEEC
Confidence            35578999999999999999998  588999999 9998877541       22 88999999886543  8999865

>TIGR00406 prmA ribosomal protein L11 methyltransferase

Probab=98.97  E-value=4.2e-09  Score=71.41  Aligned_cols=65  Identities=18%  Similarity=0.260  Sum_probs=49.7

Q ss_pred             CCCeEEEecCCchHHHHHHHHHCCCCeEEEeeh-HHHHHhCCCC-------CCeeEEEecCCCCCC-cccEEEee
Q 034578           23 NIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDL-QHVIATAPTH-------EGVSHVGGDMFDAIP-NADAVFMK   88 (90)
Q Consensus        23 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~-------~rv~~~~~d~~~~~p-~~D~i~l~   88 (90)
                      +..+|||+|||+|.++..+++. +..+++++|+ |.+++.++++       .++.+..++.....+ .||+|+.+
T Consensus       159 ~g~~VLDvGcGsG~lai~aa~~-g~~~V~avDid~~al~~a~~n~~~n~~~~~~~~~~~~~~~~~~~~fDlVvan  232 (288)
T TIGR00406       159 KDKNVIDVGCGSGILSIAALKL-GAAKVVGIDIDPLAVESARKNAELNQVSDRLQVKLIYLEQPIEGKADVIVAN  232 (288)
T ss_pred             CCCEEEEeCCChhHHHHHHHHc-CCCeEEEEECCHHHHHHHHHHHHHcCCCcceEEEecccccccCCCceEEEEe
Confidence            4589999999999999988875 4568999999 9999888762       456666666433333 39999875

Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.

>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2

Probab=98.97  E-value=2.1e-09  Score=70.14  Aligned_cols=78  Identities=15%  Similarity=0.247  Sum_probs=60.5

Q ss_pred             hHHHHHhhcccCCCCCCCeEEEecCCchHHHHHHHHHC-CCCeEEEeeh-HHHHHhCCC------CCCeeEEEecCCCCC
Q 034578            8 TMKAFVSHYKVDGFNNIRSMVDVGGGTGTVLAEIVKSY-PHIKGINFDL-QHVIATAPT------HEGVSHVGGDMFDAI   79 (90)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~-p~~~~~~~D~-p~~~~~a~~------~~rv~~~~~d~~~~~   79 (90)
                      +...+++.++   +.+..+|||||||+|+++.-+++.. +..+++.+|. |..++.|++      ..+++++.+|....+
T Consensus        60 ~~a~~l~~L~---l~pg~~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~~~~~nv~~~~gdg~~g~  136 (209)
T PF01135_consen   60 MVARMLEALD---LKPGDRVLEIGTGSGYQAALLAHLVGPVGRVVSVERDPELAERARRNLARLGIDNVEVVVGDGSEGW  136 (209)
T ss_dssp             HHHHHHHHTT---C-TT-EEEEES-TTSHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHHHTTHSEEEEES-GGGTT
T ss_pred             HHHHHHHHHh---cCCCCEEEEecCCCcHHHHHHHHhcCccceEEEECccHHHHHHHHHHHHHhccCceeEEEcchhhcc
Confidence            4556677777   7788999999999999999999885 5567999998 999988876      258999999988755


Q ss_pred             Cc---ccEEEee
Q 034578           80 PN---ADAVFMK   88 (90)
Q Consensus        80 p~---~D~i~l~   88 (90)
                      +.   ||.|++.
T Consensus       137 ~~~apfD~I~v~  148 (209)
T PF01135_consen  137 PEEAPFDRIIVT  148 (209)
T ss_dssp             GGG-SEEEEEES
T ss_pred             ccCCCcCEEEEe
Confidence            43   8999874

1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....

>KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism]

Probab=98.97  E-value=6.7e-10  Score=74.36  Aligned_cols=63  Identities=19%  Similarity=0.230  Sum_probs=51.8

Q ss_pred             CeEEEecCCchHHHHHHHHHCCCCeEEEeeh-HHHHHhCCCC--------C----CeeEEEecCCCCCCcccEEEeec
Q 034578           25 RSMVDVGGGTGTVLAEIVKSYPHIKGINFDL-QHVIATAPTH--------E----GVSHVGGDMFDAIPNADAVFMKV   89 (90)
Q Consensus        25 ~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~--------~----rv~~~~~d~~~~~p~~D~i~l~~   89 (90)
                      .+|||+|||.|.++..|++.  +++++++|. +.+++.|++.        .    |+++...|.....+.||+|+++-
T Consensus        91 ~~ilDvGCGgGLLSepLArl--ga~V~GID~s~~~V~vA~~h~~~dP~~~~~~~y~l~~~~~~~E~~~~~fDaVvcse  166 (282)
T KOG1270|consen   91 MKILDVGCGGGLLSEPLARL--GAQVTGIDASDDMVEVANEHKKMDPVLEGAIAYRLEYEDTDVEGLTGKFDAVVCSE  166 (282)
T ss_pred             ceEEEeccCccccchhhHhh--CCeeEeecccHHHHHHHHHhhhcCchhccccceeeehhhcchhhcccccceeeeHH
Confidence            67999999999999999998  488999999 9999998761        2    57777777755455699998763

>PRK04148 hypothetical protein; Provisional

Probab=98.96  E-value=5e-09  Score=64.10  Aligned_cols=76  Identities=18%  Similarity=0.286  Sum_probs=58.6

Q ss_pred             hhHHHHHhhcccCCCCCCCeEEEecCCchH-HHHHHHHHCCCCeEEEeeh-HHHHHhCCCCCCeeEEEecCCCCCC----
Q 034578            7 ITMKAFVSHYKVDGFNNIRSMVDVGGGTGT-VLAEIVKSYPHIKGINFDL-QHVIATAPTHEGVSHVGGDMFDAIP----   80 (90)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~vlDvG~G~G~-~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~~rv~~~~~d~~~~~p----   80 (90)
                      .+++.+.+.++   ..+..+++|||||+|. ++..|.+.  +..++++|+ |.+++.+++. .++++.+|+|++-+    
T Consensus         3 ~i~~~l~~~~~---~~~~~kileIG~GfG~~vA~~L~~~--G~~ViaIDi~~~aV~~a~~~-~~~~v~dDlf~p~~~~y~   76 (134)
T PRK04148          3 TIAEFIAENYE---KGKNKKIVELGIGFYFKVAKKLKES--GFDVIVIDINEKAVEKAKKL-GLNAFVDDLFNPNLEIYK   76 (134)
T ss_pred             HHHHHHHHhcc---cccCCEEEEEEecCCHHHHHHHHHC--CCEEEEEECCHHHHHHHHHh-CCeEEECcCCCCCHHHHh
Confidence            35666777776   2345789999999996 88888865  578999999 9999888765 36899999999533    


Q ss_pred             cccEEEee
Q 034578           81 NADAVFMK   88 (90)
Q Consensus        81 ~~D~i~l~   88 (90)
                      .+|+|+--
T Consensus        77 ~a~liysi   84 (134)
T PRK04148         77 NAKLIYSI   84 (134)
T ss_pred             cCCEEEEe
Confidence            38988753

>PRK01581 speE spermidine synthase; Validated

Probab=98.96  E-value=3.2e-09  Score=74.23  Aligned_cols=66  Identities=21%  Similarity=0.233  Sum_probs=55.3

Q ss_pred             CCCeEEEecCCchHHHHHHHHHCCCCeEEEeeh-HHHHHhCCC-------------CCCeeEEEecCCCC---CC-cccE
Q 034578           23 NIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDL-QHVIATAPT-------------HEGVSHVGGDMFDA---IP-NADA   84 (90)
Q Consensus        23 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~-------------~~rv~~~~~d~~~~---~p-~~D~   84 (90)
                      .+.+||++|||+|..+.++++..+..+++.+|+ |.+++.|++             .+|++++.+|..+.   .+ .||+
T Consensus       150 ~PkrVLIIGgGdG~tlrelLk~~~v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~~fL~~~~~~YDV  229 (374)
T PRK01581        150 DPKRVLILGGGDGLALREVLKYETVLHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCDAKEFLSSPSSLYDV  229 (374)
T ss_pred             CCCEEEEECCCHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhccccchhccccCCCCceEEEECcHHHHHHhcCCCccE
Confidence            568999999999999999998666778999999 999998873             37999999998863   23 3999


Q ss_pred             EEee
Q 034578           85 VFMK   88 (90)
Q Consensus        85 i~l~   88 (90)
                      |++-
T Consensus       230 IIvD  233 (374)
T PRK01581        230 IIID  233 (374)
T ss_pred             EEEc
Confidence            9874

>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed

Probab=98.95  E-value=2e-09  Score=73.78  Aligned_cols=64  Identities=20%  Similarity=0.144  Sum_probs=52.5

Q ss_pred             CCCeEEEecCCchHHHHHHHHHCCCCeEEEeeh-HHHHHhCCCC------CCeeEEEecCCCC---CC-cccEEEee
Q 034578           23 NIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDL-QHVIATAPTH------EGVSHVGGDMFDA---IP-NADAVFMK   88 (90)
Q Consensus        23 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~------~rv~~~~~d~~~~---~p-~~D~i~l~   88 (90)
                      +..+|||+|||+|.++..+++.  ..+++++|+ +.+++.|+++      ++++|+.+|+.+.   .. .+|+|++.
T Consensus       173 ~~~~VLDl~cG~G~~sl~la~~--~~~V~gvD~s~~av~~A~~n~~~~~l~~v~~~~~D~~~~~~~~~~~~D~Vv~d  247 (315)
T PRK03522        173 PPRSMWDLFCGVGGFGLHCATP--GMQLTGIEISAEAIACAKQSAAELGLTNVQFQALDSTQFATAQGEVPDLVLVN  247 (315)
T ss_pred             CCCEEEEccCCCCHHHHHHHhc--CCEEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCHHHHHHhcCCCCeEEEEC
Confidence            3579999999999999999984  478999999 9999988752      5799999999762   22 38999874

>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C

Probab=98.94  E-value=5.9e-09  Score=63.94  Aligned_cols=63  Identities=22%  Similarity=0.309  Sum_probs=44.5

Q ss_pred             CCCCeEEEecCCchHHHHHHHHHCCCCeEEEeeh-HHHHHhCCCCCCeeEEEecCCC-CCC--cccEEEeecC
Q 034578           22 NNIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDL-QHVIATAPTHEGVSHVGGDMFD-AIP--NADAVFMKVA   90 (90)
Q Consensus        22 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~~rv~~~~~d~~~-~~p--~~D~i~l~~v   90 (90)
                      ....+|||+|||+|.++..+++...  +++++|+ +.+++.    .+......+..+ ..+  .+|+|++..+
T Consensus        21 ~~~~~vLDiGcG~G~~~~~l~~~~~--~~~g~D~~~~~~~~----~~~~~~~~~~~~~~~~~~~fD~i~~~~~   87 (161)
T PF13489_consen   21 KPGKRVLDIGCGTGSFLRALAKRGF--EVTGVDISPQMIEK----RNVVFDNFDAQDPPFPDGSFDLIICNDV   87 (161)
T ss_dssp             TTTSEEEEESSTTSHHHHHHHHTTS--EEEEEESSHHHHHH----TTSEEEEEECHTHHCHSSSEEEEEEESS
T ss_pred             CCCCEEEEEcCCCCHHHHHHHHhCC--EEEEEECCHHHHhh----hhhhhhhhhhhhhhccccchhhHhhHHH
Confidence            4678999999999999999976633  9999999 899887    222222222222 222  3999998764

...

>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family

Probab=98.94  E-value=1e-08  Score=67.08  Aligned_cols=63  Identities=16%  Similarity=0.153  Sum_probs=50.4

Q ss_pred             CCCeEEEecCCchHHHHHHHHHCCCCeEEEeeh-HHHHHhCCC------------------CCCeeEEEecCCC-C---C
Q 034578           23 NIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDL-QHVIATAPT------------------HEGVSHVGGDMFD-A---I   79 (90)
Q Consensus        23 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~------------------~~rv~~~~~d~~~-~---~   79 (90)
                      +..++||+|||.|..+..|+++  +.+++++|+ |.+++.+..                  ..+++++.+|+++ +   .
T Consensus        34 ~~~rvLd~GCG~G~da~~LA~~--G~~V~gvD~S~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~  111 (213)
T TIGR03840        34 AGARVFVPLCGKSLDLAWLAEQ--GHRVLGVELSEIAVEQFFAENGLTPTVTQQGEFTRYRAGNIEIFCGDFFALTAADL  111 (213)
T ss_pred             CCCeEEEeCCCchhHHHHHHhC--CCeEEEEeCCHHHHHHHHHHcCCCcceeccccceeeecCceEEEEccCCCCCcccC
Confidence            4579999999999999999986  778999999 998887411                  2469999999998 3   2


Q ss_pred             CcccEEEe
Q 034578           80 PNADAVFM   87 (90)
Q Consensus        80 p~~D~i~l   87 (90)
                      +.+|.|+-
T Consensus       112 ~~fD~i~D  119 (213)
T TIGR03840       112 GPVDAVYD  119 (213)
T ss_pred             CCcCEEEe
Confidence            33787763

Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.

>TIGR03438 probable methyltransferase

Probab=98.93  E-value=4.8e-09  Score=71.51  Aligned_cols=64  Identities=9%  Similarity=0.171  Sum_probs=50.8

Q ss_pred             HHHHHhhcccCCCCCCCeEEEecCCchHHHHHHHHHCC-CCeEEEeeh-HHHHHhCCCC-------CCeeEEEecCCC
Q 034578            9 MKAFVSHYKVDGFNNIRSMVDVGGGTGTVLAEIVKSYP-HIKGINFDL-QHVIATAPTH-------EGVSHVGGDMFD   77 (90)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p-~~~~~~~D~-p~~~~~a~~~-------~rv~~~~~d~~~   77 (90)
                      ++.+++.++     +..+|||+|||+|..+..++++.+ ..+++++|+ ++|++.++++       .++.++.+|+.+
T Consensus        54 ~~~ia~~~~-----~~~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL~~a~~~l~~~~p~~~v~~i~gD~~~  126 (301)
T TIGR03438        54 ADEIAAATG-----AGCELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKESAAALAADYPQLEVHGICADFTQ  126 (301)
T ss_pred             HHHHHHhhC-----CCCeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHHHHHHHHHHhhCCCceEEEEEEcccc
Confidence            444444444     457899999999999999999987 689999999 9998877541       346778999987

This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases

>PRK00811 spermidine synthase; Provisional

Probab=98.93  E-value=3.9e-09  Score=71.49  Aligned_cols=66  Identities=23%  Similarity=0.340  Sum_probs=54.8

Q ss_pred             CCCeEEEecCCchHHHHHHHHHCCCCeEEEeeh-HHHHHhCCC-----------CCCeeEEEecCCCCC---C-cccEEE
Q 034578           23 NIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDL-QHVIATAPT-----------HEGVSHVGGDMFDAI---P-NADAVF   86 (90)
Q Consensus        23 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~-----------~~rv~~~~~d~~~~~---p-~~D~i~   86 (90)
                      ++++||++|||+|.++.++++..+..+++++|+ |.+++.+++           .+|++++.+|..+.+   + .||+|+
T Consensus        76 ~p~~VL~iG~G~G~~~~~~l~~~~~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~~~yDvIi  155 (283)
T PRK00811         76 NPKRVLIIGGGDGGTLREVLKHPSVEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVAETENSFDVII  155 (283)
T ss_pred             CCCEEEEEecCchHHHHHHHcCCCCCEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHHHhhCCCcccEEE
Confidence            568999999999999999998656678999999 999988864           368999999987632   2 399998


Q ss_pred             ee
Q 034578           87 MK   88 (90)
Q Consensus        87 l~   88 (90)
                      +-
T Consensus       156 ~D  157 (283)
T PRK00811        156 VD  157 (283)
T ss_pred             EC
Confidence            73

>PLN02366 spermidine synthase

Probab=98.92  E-value=5.9e-09  Score=71.55  Aligned_cols=66  Identities=27%  Similarity=0.350  Sum_probs=53.5

Q ss_pred             CCCCeEEEecCCchHHHHHHHHHCCCCeEEEeeh-HHHHHhCCC----------CCCeeEEEecCCC---CCC--cccEE
Q 034578           22 NNIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDL-QHVIATAPT----------HEGVSHVGGDMFD---AIP--NADAV   85 (90)
Q Consensus        22 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~----------~~rv~~~~~d~~~---~~p--~~D~i   85 (90)
                      .++++||+||||.|.++.++++..+..+++.+|+ |.+++.+++          .+|++++.+|..+   ..+  .||+|
T Consensus        90 ~~pkrVLiIGgG~G~~~rellk~~~v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~~l~~~~~~~yDvI  169 (308)
T PLN02366         90 PNPKKVLVVGGGDGGVLREIARHSSVEQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGDGVEFLKNAPEGTYDAI  169 (308)
T ss_pred             CCCCeEEEEcCCccHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhhhhhccccCCCceEEEEChHHHHHhhccCCCCCEE
Confidence            4578999999999999999987644468999999 888888765          3689999999754   333  39999


Q ss_pred             Ee
Q 034578           86 FM   87 (90)
Q Consensus        86 ~l   87 (90)
                      ++
T Consensus       170 i~  171 (308)
T PLN02366        170 IV  171 (308)
T ss_pred             EE
Confidence            87

>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences

Probab=98.90  E-value=5.8e-09  Score=71.18  Aligned_cols=62  Identities=18%  Similarity=0.225  Sum_probs=45.1

Q ss_pred             CCCeEEEecCCchHHHHHHHHHCCCCeEEEeeh-HHHHHhCCCC-------CCeeEEEecCCCCC--CcccEEEee
Q 034578           23 NIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDL-QHVIATAPTH-------EGVSHVGGDMFDAI--PNADAVFMK   88 (90)
Q Consensus        23 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~-------~rv~~~~~d~~~~~--p~~D~i~l~   88 (90)
                      +..+|||+|||||.+++..++... .+++++|+ |.+++.|+++       +++.+.  . ....  ..||+|+.+
T Consensus       161 ~g~~vLDvG~GSGILaiaA~klGA-~~v~a~DiDp~Av~~a~~N~~~N~~~~~~~v~--~-~~~~~~~~~dlvvAN  232 (295)
T PF06325_consen  161 PGKRVLDVGCGSGILAIAAAKLGA-KKVVAIDIDPLAVEAARENAELNGVEDRIEVS--L-SEDLVEGKFDLVVAN  232 (295)
T ss_dssp             TTSEEEEES-TTSHHHHHHHHTTB-SEEEEEESSCHHHHHHHHHHHHTT-TTCEEES--C-TSCTCCS-EEEEEEE
T ss_pred             CCCEEEEeCCcHHHHHHHHHHcCC-CeEEEecCCHHHHHHHHHHHHHcCCCeeEEEE--E-ecccccccCCEEEEC
Confidence            457999999999999999999743 47999999 9999988862       455442  1 2222  339999865

Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....

>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed

Probab=98.89  E-value=8.1e-09  Score=68.68  Aligned_cols=41  Identities=22%  Similarity=0.323  Sum_probs=34.9

Q ss_pred             CCCeEEEecCCchHHHHHHHHHCCCCeEEEeeh-HHHHHhCCC
Q 034578           23 NIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDL-QHVIATAPT   64 (90)
Q Consensus        23 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~   64 (90)
                      +..+|||+|||+|.++..+++..+ .+++++|+ |.+++.|++
T Consensus       119 ~~~~VLDiGcGsG~l~i~~~~~g~-~~v~giDis~~~l~~A~~  160 (250)
T PRK00517        119 PGKTVLDVGCGSGILAIAAAKLGA-KKVLAVDIDPQAVEAARE  160 (250)
T ss_pred             CCCEEEEeCCcHHHHHHHHHHcCC-CeEEEEECCHHHHHHHHH
Confidence            568999999999999998877544 36999999 999998876

>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional

Probab=98.89  E-value=1.9e-08  Score=65.45  Aligned_cols=63  Identities=22%  Similarity=0.285  Sum_probs=49.2

Q ss_pred             CCCCCeEEEecCCchHHHHHHHHHC-CCCeEEEeehHHHHHhCCCCCCeeEEEecCCCC---------CC--cccEEEe
Q 034578           21 FNNIRSMVDVGGGTGTVLAEIVKSY-PHIKGINFDLQHVIATAPTHEGVSHVGGDMFDA---------IP--NADAVFM   87 (90)
Q Consensus        21 ~~~~~~vlDvG~G~G~~~~~l~~~~-p~~~~~~~D~p~~~~~a~~~~rv~~~~~d~~~~---------~p--~~D~i~l   87 (90)
                      +.+..+|||+|||+|.++..++++. +..+++++|+.++    ...++++++.+|+.+.         ++  .+|+|+.
T Consensus        49 ~~~~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~~----~~~~~v~~i~~D~~~~~~~~~i~~~~~~~~~D~V~S  123 (209)
T PRK11188         49 FKPGMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILPM----DPIVGVDFLQGDFRDELVLKALLERVGDSKVQVVMS  123 (209)
T ss_pred             CCCCCEEEEEcccCCHHHHHHHHHcCCCceEEEEecccc----cCCCCcEEEecCCCChHHHHHHHHHhCCCCCCEEec
Confidence            4566799999999999999999986 5679999998333    2235699999999872         33  2899885

>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]

Probab=98.87  E-value=2.1e-08  Score=65.35  Aligned_cols=76  Identities=14%  Similarity=0.251  Sum_probs=62.3

Q ss_pred             hHHHHHhhcccCCCCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeeh-HHHHHhCCC------CCCeeEEEecCCCCCC
Q 034578            8 TMKAFVSHYKVDGFNNIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDL-QHVIATAPT------HEGVSHVGGDMFDAIP   80 (90)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~------~~rv~~~~~d~~~~~p   80 (90)
                      .+..+++.+.   +++..+||+||||+|+.+.-+++-.-  +++.+|+ +...+.|++      ..++.++.+|-...+|
T Consensus        60 ~vA~m~~~L~---~~~g~~VLEIGtGsGY~aAvla~l~~--~V~siEr~~~L~~~A~~~L~~lg~~nV~v~~gDG~~G~~  134 (209)
T COG2518          60 MVARMLQLLE---LKPGDRVLEIGTGSGYQAAVLARLVG--RVVSIERIEELAEQARRNLETLGYENVTVRHGDGSKGWP  134 (209)
T ss_pred             HHHHHHHHhC---CCCCCeEEEECCCchHHHHHHHHHhC--eEEEEEEcHHHHHHHHHHHHHcCCCceEEEECCcccCCC
Confidence            3455666666   77889999999999999999998865  8899998 888888876      3679999999998665


Q ss_pred             c---ccEEEee
Q 034578           81 N---ADAVFMK   88 (90)
Q Consensus        81 ~---~D~i~l~   88 (90)
                      +   ||.|+..
T Consensus       135 ~~aPyD~I~Vt  145 (209)
T COG2518         135 EEAPYDRIIVT  145 (209)
T ss_pred             CCCCcCEEEEe
Confidence            3   8999864

>TIGR01177 conserved hypothetical protein TIGR01177

Probab=98.87  E-value=1e-08  Score=70.56  Aligned_cols=78  Identities=23%  Similarity=0.201  Sum_probs=59.0

Q ss_pred             hhhHHHHHhhcccCCCCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeeh-HHHHHhCCCC------CCeeEEEecCCC-
Q 034578            6 KITMKAFVSHYKVDGFNNIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDL-QHVIATAPTH------EGVSHVGGDMFD-   77 (90)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~------~rv~~~~~d~~~-   77 (90)
                      ..++..++....   +.+..+|||.|||+|.++++.+..  ..+++++|+ +.+++.++++      +++.+..+|+.+ 
T Consensus       168 ~~la~~~~~l~~---~~~g~~vLDp~cGtG~~lieaa~~--~~~v~g~Di~~~~~~~a~~nl~~~g~~~i~~~~~D~~~l  242 (329)
T TIGR01177       168 PKLARAMVNLAR---VTEGDRVLDPFCGTGGFLIEAGLM--GAKVIGCDIDWKMVAGARINLEHYGIEDFFVKRGDATKL  242 (329)
T ss_pred             HHHHHHHHHHhC---CCCcCEEEECCCCCCHHHHHHHHh--CCeEEEEcCCHHHHHHHHHHHHHhCCCCCeEEecchhcC
Confidence            345555655555   456679999999999999887664  678999999 9998877652      347899999987 


Q ss_pred             CCC-c-ccEEEee
Q 034578           78 AIP-N-ADAVFMK   88 (90)
Q Consensus        78 ~~p-~-~D~i~l~   88 (90)
                      +++ . +|+|++.
T Consensus       243 ~~~~~~~D~Iv~d  255 (329)
T TIGR01177       243 PLSSESVDAIATD  255 (329)
T ss_pred             CcccCCCCEEEEC
Confidence            543 2 8999874

This family is found exclusively in the Archaea.

>KOG1271 consensus Methyltransferases [General function prediction only]

Probab=98.86  E-value=5.1e-09  Score=67.26  Aligned_cols=64  Identities=20%  Similarity=0.302  Sum_probs=51.6

Q ss_pred             CCCeEEEecCCchHHHHHHHHHCCCCeEEEeeh-HHHHHhCCC-------CCCeeEEEecCCCC--CCc-ccEEE
Q 034578           23 NIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDL-QHVIATAPT-------HEGVSHVGGDMFDA--IPN-ADAVF   86 (90)
Q Consensus        23 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~-------~~rv~~~~~d~~~~--~p~-~D~i~   86 (90)
                      ...+|||+|||+|.++..|++.--.-+.+++|. +.+++.|+.       .+.|+|.+.|++++  .+. +|+|+
T Consensus        67 ~A~~VlDLGtGNG~~L~~L~~egf~~~L~GvDYs~~AV~LA~niAe~~~~~n~I~f~q~DI~~~~~~~~qfdlvl  141 (227)
T KOG1271|consen   67 QADRVLDLGTGNGHLLFQLAKEGFQSKLTGVDYSEKAVELAQNIAERDGFSNEIRFQQLDITDPDFLSGQFDLVL  141 (227)
T ss_pred             cccceeeccCCchHHHHHHHHhcCCCCccccccCHHHHHHHHHHHHhcCCCcceeEEEeeccCCcccccceeEEe
Confidence            345999999999999999999865556899999 898888753       24499999999984  344 88876

>PTZ00146 fibrillarin; Provisional

Probab=98.86  E-value=3.2e-08  Score=67.42  Aligned_cols=83  Identities=12%  Similarity=0.158  Sum_probs=62.5

Q ss_pred             hhhHHHHHhhcccCCCCCCCeEEEecCCchHHHHHHHHHC-CCCeEEEeeh-HH----HHHhCCCCCCeeEEEecCCCC-
Q 034578            6 KITMKAFVSHYKVDGFNNIRSMVDVGGGTGTVLAEIVKSY-PHIKGINFDL-QH----VIATAPTHEGVSHVGGDMFDA-   78 (90)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~-p~~~~~~~D~-p~----~~~~a~~~~rv~~~~~d~~~~-   78 (90)
                      ..++..|+..++...+.+..+|||+|||+|.++..+++.. |.-+++++|+ |.    +++.+++..++.++.+|...+ 
T Consensus       115 SKlaa~i~~g~~~l~IkpG~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl~~ak~r~NI~~I~~Da~~p~  194 (293)
T PTZ00146        115 SKLAAAIIGGVANIPIKPGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMAKKRPNIVPIIEDARYPQ  194 (293)
T ss_pred             cHHHHHHHCCcceeccCCCCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhcCCCEEEECCccChh
Confidence            4566677666653114566799999999999999999986 4678999998 65    566666668899999998653 


Q ss_pred             -----CCcccEEEee
Q 034578           79 -----IPNADAVFMK   88 (90)
Q Consensus        79 -----~p~~D~i~l~   88 (90)
                           .+.+|+|++.
T Consensus       195 ~y~~~~~~vDvV~~D  209 (293)
T PTZ00146        195 KYRMLVPMVDVIFAD  209 (293)
T ss_pred             hhhcccCCCCEEEEe
Confidence                 2238999874

>PRK03612 spermidine synthase; Provisional

Probab=98.85  E-value=1.2e-08  Score=74.17  Aligned_cols=65  Identities=29%  Similarity=0.473  Sum_probs=54.5

Q ss_pred             CCCeEEEecCCchHHHHHHHHHCCC-CeEEEeeh-HHHHHhCCC-------------CCCeeEEEecCCCC---CCc-cc
Q 034578           23 NIRSMVDVGGGTGTVLAEIVKSYPH-IKGINFDL-QHVIATAPT-------------HEGVSHVGGDMFDA---IPN-AD   83 (90)
Q Consensus        23 ~~~~vlDvG~G~G~~~~~l~~~~p~-~~~~~~D~-p~~~~~a~~-------------~~rv~~~~~d~~~~---~p~-~D   83 (90)
                      ++++|||+|||+|..+.++++ +|. .+++.+|+ |++++.+++             .+|++++.+|..+.   .++ ||
T Consensus       297 ~~~rVL~IG~G~G~~~~~ll~-~~~v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l~~~~~~fD  375 (521)
T PRK03612        297 RPRRVLVLGGGDGLALREVLK-YPDVEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFNWLRKLAEKFD  375 (521)
T ss_pred             CCCeEEEEcCCccHHHHHHHh-CCCcCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHHHHHhCCCCCC
Confidence            568999999999999999997 455 79999999 999998876             26899999998762   333 99


Q ss_pred             EEEee
Q 034578           84 AVFMK   88 (90)
Q Consensus        84 ~i~l~   88 (90)
                      +|++.
T Consensus       376 vIi~D  380 (521)
T PRK03612        376 VIIVD  380 (521)
T ss_pred             EEEEe
Confidence            99874

>PRK14902 16S rRNA methyltransferase B; Provisional

Probab=98.85  E-value=1.3e-08  Score=72.52  Aligned_cols=67  Identities=12%  Similarity=0.159  Sum_probs=55.1

Q ss_pred             CCCCCeEEEecCCchHHHHHHHHHC-CCCeEEEeeh-HHHHHhCCCC------CCeeEEEecCCCC---CCc-ccEEEe
Q 034578           21 FNNIRSMVDVGGGTGTVLAEIVKSY-PHIKGINFDL-QHVIATAPTH------EGVSHVGGDMFDA---IPN-ADAVFM   87 (90)
Q Consensus        21 ~~~~~~vlDvG~G~G~~~~~l~~~~-p~~~~~~~D~-p~~~~~a~~~------~rv~~~~~d~~~~---~p~-~D~i~l   87 (90)
                      ..+..+|||+|||+|..+..+++.. +..+++++|+ +.+++.++++      .+++++.+|+.+.   ++. +|+|++
T Consensus       248 ~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~~~~~~~fD~Vl~  326 (444)
T PRK14902        248 PKGGDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIEENAKRLGLTNIETKALDARKVHEKFAEKFDKILV  326 (444)
T ss_pred             CCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCCcccccchhcccCCEEEE
Confidence            4456799999999999999999986 6789999999 9988877652      4589999999762   333 899986

>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional

Probab=98.83  E-value=1.2e-08  Score=69.72  Aligned_cols=77  Identities=18%  Similarity=0.205  Sum_probs=62.9

Q ss_pred             hHHHHHhhcccCCCCCCCeEEEecCCchHHHHHHHHHCC-CCeEEEeeh-HHHHHhCCCC----CCeeEEEecCCC--C-
Q 034578            8 TMKAFVSHYKVDGFNNIRSMVDVGGGTGTVLAEIVKSYP-HIKGINFDL-QHVIATAPTH----EGVSHVGGDMFD--A-   78 (90)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p-~~~~~~~D~-p~~~~~a~~~----~rv~~~~~d~~~--~-   78 (90)
                      +.+.+++.+.   ..+...++|.+||.|..+..+++..| +.+++++|. |.+++.+++.    +|++++.+||.+  . 
T Consensus         7 ll~Evl~~L~---~~pg~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al~~ak~~L~~~~ri~~i~~~f~~l~~~   83 (296)
T PRK00050          7 LLDEVVDALA---IKPDGIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAAAKDRLKPFGRFTLVHGNFSNLKEV   83 (296)
T ss_pred             cHHHHHHhhC---CCCCCEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHhhccCCcEEEEeCCHHHHHHH
Confidence            4566777776   45567999999999999999999986 789999999 9999988752    589999999986  1 


Q ss_pred             CC----cccEEEe
Q 034578           79 IP----NADAVFM   87 (90)
Q Consensus        79 ~p----~~D~i~l   87 (90)
                      ++    .+|.|++
T Consensus        84 l~~~~~~vDgIl~   96 (296)
T PRK00050         84 LAEGLGKVDGILL   96 (296)
T ss_pred             HHcCCCccCEEEE
Confidence            22    4788876

>TIGR00438 rrmJ cell division protein FtsJ

Probab=98.82  E-value=3.7e-08  Score=62.79  Aligned_cols=69  Identities=22%  Similarity=0.314  Sum_probs=52.5

Q ss_pred             HHhhcccCCCCCCCeEEEecCCchHHHHHHHHHC-CCCeEEEeeh-HHHHHhCCCCCCeeEEEecCCCC---------CC
Q 034578           12 FVSHYKVDGFNNIRSMVDVGGGTGTVLAEIVKSY-PHIKGINFDL-QHVIATAPTHEGVSHVGGDMFDA---------IP   80 (90)
Q Consensus        12 ~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~-p~~~~~~~D~-p~~~~~a~~~~rv~~~~~d~~~~---------~p   80 (90)
                      +.+.+..  ..+..+|||+|||+|.++..+++++ +..+++++|+ |.+     ...+++++.+|+.+.         .+
T Consensus        23 ~~~~~~~--i~~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~-----~~~~i~~~~~d~~~~~~~~~l~~~~~   95 (188)
T TIGR00438        23 LNQKFKL--IKPGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK-----PIENVDFIRGDFTDEEVLNKIRERVG   95 (188)
T ss_pred             HHHHhcc--cCCCCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc-----cCCCceEEEeeCCChhHHHHHHHHhC
Confidence            4444542  5667899999999999999999887 6678999999 643     235688899998752         23


Q ss_pred             --cccEEEe
Q 034578           81 --NADAVFM   87 (90)
Q Consensus        81 --~~D~i~l   87 (90)
                        .+|+|+.
T Consensus        96 ~~~~D~V~~  104 (188)
T TIGR00438        96 DDKVDVVMS  104 (188)
T ss_pred             CCCccEEEc
Confidence              2899986

>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]

Probab=98.82  E-value=1.3e-08  Score=69.58  Aligned_cols=66  Identities=20%  Similarity=0.298  Sum_probs=47.3

Q ss_pred             CCCCeEEEecCCchHHHHHHHHHCCCCeEEEeeh-HHHHHhCCCC---CCee----EEEecCCCCCC--cccEEEee
Q 034578           22 NNIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDL-QHVIATAPTH---EGVS----HVGGDMFDAIP--NADAVFMK   88 (90)
Q Consensus        22 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~---~rv~----~~~~d~~~~~p--~~D~i~l~   88 (90)
                      .+..+++|+|||||.++++.++.. ..+++++|+ |.+++.|+++   ..+.    ....+..+...  .||+|+.+
T Consensus       161 ~~g~~vlDvGcGSGILaIAa~kLG-A~~v~g~DiDp~AV~aa~eNa~~N~v~~~~~~~~~~~~~~~~~~~~DvIVAN  236 (300)
T COG2264         161 KKGKTVLDVGCGSGILAIAAAKLG-AKKVVGVDIDPQAVEAARENARLNGVELLVQAKGFLLLEVPENGPFDVIVAN  236 (300)
T ss_pred             cCCCEEEEecCChhHHHHHHHHcC-CceEEEecCCHHHHHHHHHHHHHcCCchhhhcccccchhhcccCcccEEEeh
Confidence            367899999999999999999964 456999999 9999998873   2233    22222222222  38998864

>PRK11727 23S rRNA mA1618 methyltransferase; Provisional

Probab=98.82  E-value=1.4e-08  Score=69.99  Aligned_cols=66  Identities=17%  Similarity=0.194  Sum_probs=52.1

Q ss_pred             CCCeEEEecCCchHHHHHHHHHCCCCeEEEeeh-HHHHHhCCC----C----CCeeEEE----ecCCCCC--C--cccEE
Q 034578           23 NIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDL-QHVIATAPT----H----EGVSHVG----GDMFDAI--P--NADAV   85 (90)
Q Consensus        23 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~----~----~rv~~~~----~d~~~~~--p--~~D~i   85 (90)
                      ...++||||||+|.+...++.+.++.+++++|+ |.+++.|++    +    +++++..    .++++.+  +  .+|+|
T Consensus       114 ~~~~vLDIGtGag~I~~lLa~~~~~~~~~atDId~~Al~~A~~Nv~~Np~l~~~I~~~~~~~~~~i~~~i~~~~~~fDli  193 (321)
T PRK11727        114 ANVRVLDIGVGANCIYPLIGVHEYGWRFVGSDIDPQALASAQAIISANPGLNGAIRLRLQKDSKAIFKGIIHKNERFDAT  193 (321)
T ss_pred             CCceEEEecCCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhccCCcCcEEEEEccchhhhhhcccccCCceEEE
Confidence            357899999999999999999999999999999 999998875    2    4677754    3444432  2  38999


Q ss_pred             Eee
Q 034578           86 FMK   88 (90)
Q Consensus        86 ~l~   88 (90)
                      +++
T Consensus       194 vcN  196 (321)
T PRK11727        194 LCN  196 (321)
T ss_pred             EeC
Confidence            875

>PRK10901 16S rRNA methyltransferase B; Provisional

Probab=98.81  E-value=3.5e-08  Score=70.18  Aligned_cols=75  Identities=15%  Similarity=0.199  Sum_probs=58.7

Q ss_pred             HHHHhhcccCCCCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeeh-HHHHHhCCCC-----CCeeEEEecCCCC---C-
Q 034578           10 KAFVSHYKVDGFNNIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDL-QHVIATAPTH-----EGVSHVGGDMFDA---I-   79 (90)
Q Consensus        10 ~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~-----~rv~~~~~d~~~~---~-   79 (90)
                      ..++..++   ..+..+|||+|||+|..+..+++..++.+++++|+ +.+++.++++     -+++++.+|..+.   . 
T Consensus       234 ~~~~~~l~---~~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~s~~~l~~~~~n~~~~g~~~~~~~~D~~~~~~~~~  310 (427)
T PRK10901        234 QLAATLLA---PQNGERVLDACAAPGGKTAHILELAPQAQVVALDIDAQRLERVRENLQRLGLKATVIVGDARDPAQWWD  310 (427)
T ss_pred             HHHHHHcC---CCCCCEEEEeCCCCChHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEcCcccchhhcc
Confidence            33444454   45668999999999999999999998889999999 9999888652     3478999998762   2 


Q ss_pred             Cc-ccEEEe
Q 034578           80 PN-ADAVFM   87 (90)
Q Consensus        80 p~-~D~i~l   87 (90)
                      +. +|.|++
T Consensus       311 ~~~fD~Vl~  319 (427)
T PRK10901        311 GQPFDRILL  319 (427)
T ss_pred             cCCCCEEEE
Confidence            23 899985

>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA

Probab=98.80  E-value=7.4e-09  Score=73.47  Aligned_cols=77  Identities=13%  Similarity=0.196  Sum_probs=58.7

Q ss_pred             hhHHHHHhhcccCCCCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeeh-HHHHHhCCCC------CCeeEEEecCCCC-
Q 034578            7 ITMKAFVSHYKVDGFNNIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDL-QHVIATAPTH------EGVSHVGGDMFDA-   78 (90)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~------~rv~~~~~d~~~~-   78 (90)
                      .+.+.+.+.+.   ..+..+|||+|||+|.++..+++..  .+++++|+ +.+++.|+++      .+++++.+|+.+. 
T Consensus       279 ~l~~~~~~~l~---~~~~~~vLDl~cG~G~~sl~la~~~--~~V~~vE~~~~av~~a~~n~~~~~~~nv~~~~~d~~~~l  353 (431)
T TIGR00479       279 KLVDRALEALE---LQGEELVVDAYCGVGTFTLPLAKQA--KSVVGIEVVPESVEKAQQNAELNGIANVEFLAGTLETVL  353 (431)
T ss_pred             HHHHHHHHHhc---cCCCCEEEEcCCCcCHHHHHHHHhC--CEEEEEEcCHHHHHHHHHHHHHhCCCceEEEeCCHHHHH
Confidence            34455555554   4456799999999999999999875  47999999 9999988762      5799999998652 


Q ss_pred             ----C-C-cccEEEee
Q 034578           79 ----I-P-NADAVFMK   88 (90)
Q Consensus        79 ----~-p-~~D~i~l~   88 (90)
                          . . .+|+|++.
T Consensus       354 ~~~~~~~~~~D~vi~d  369 (431)
T TIGR00479       354 PKQPWAGQIPDVLLLD  369 (431)
T ss_pred             HHHHhcCCCCCEEEEC
Confidence                1 1 27998873

This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.

>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []

Probab=98.79  E-value=1.3e-08  Score=66.23  Aligned_cols=81  Identities=19%  Similarity=0.296  Sum_probs=53.7

Q ss_pred             hhhHHHHHhhcccCCCCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeeh-HHHHHhCCC---------------CCCee
Q 034578            6 KITMKAFVSHYKVDGFNNIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDL-QHVIATAPT---------------HEGVS   69 (90)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~---------------~~rv~   69 (90)
                      -.....+++.+.   +.+...++|+|||.|......+..++--+++|+++ |...+.|+.               ..+++
T Consensus        28 ~~~~~~il~~~~---l~~~dvF~DlGSG~G~~v~~aal~~~~~~~~GIEi~~~~~~~a~~~~~~~~~~~~~~g~~~~~v~  104 (205)
T PF08123_consen   28 PEFVSKILDELN---LTPDDVFYDLGSGVGNVVFQAALQTGCKKSVGIEILPELHDLAEELLEELKKRMKHYGKRPGKVE  104 (205)
T ss_dssp             HHHHHHHHHHTT-----TT-EEEEES-TTSHHHHHHHHHH--SEEEEEE-SHHHHHHHHHHHHHHHHHHHHCTB---EEE
T ss_pred             HHHHHHHHHHhC---CCCCCEEEECCCCCCHHHHHHHHHcCCcEEEEEEechHHHHHHHHHHHHHHHHHHHhhcccccce
Confidence            344566777776   66778999999999999999998887777999998 876655532               26789


Q ss_pred             EEEecCCC-C-----CCcccEEEeec
Q 034578           70 HVGGDMFD-A-----IPNADAVFMKV   89 (90)
Q Consensus        70 ~~~~d~~~-~-----~p~~D~i~l~~   89 (90)
                      +..+||.+ +     +.++|+|++++
T Consensus       105 l~~gdfl~~~~~~~~~s~AdvVf~Nn  130 (205)
T PF08123_consen  105 LIHGDFLDPDFVKDIWSDADVVFVNN  130 (205)
T ss_dssp             EECS-TTTHHHHHHHGHC-SEEEE--
T ss_pred             eeccCccccHhHhhhhcCCCEEEEec
Confidence            99999998 2     24589999986

H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....

>PRK13255 thiopurine S-methyltransferase; Reviewed

Probab=98.78  E-value=4.2e-08  Score=64.36  Aligned_cols=63  Identities=13%  Similarity=0.154  Sum_probs=50.6

Q ss_pred             CCCCeEEEecCCchHHHHHHHHHCCCCeEEEeeh-HHHHHhCCC------------------CCCeeEEEecCCCC----
Q 034578           22 NNIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDL-QHVIATAPT------------------HEGVSHVGGDMFDA----   78 (90)
Q Consensus        22 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~------------------~~rv~~~~~d~~~~----   78 (90)
                      .+..+|||+|||.|..+..|+++  +.+++++|+ |.+++.+..                  ..++++..+|+++.    
T Consensus        36 ~~~~rvL~~gCG~G~da~~LA~~--G~~V~avD~s~~Ai~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~D~~~l~~~~  113 (218)
T PRK13255         36 PAGSRVLVPLCGKSLDMLWLAEQ--GHEVLGVELSELAVEQFFAENGLTPQTRQSGEFEHYQAGEITIYCGDFFALTAAD  113 (218)
T ss_pred             CCCCeEEEeCCCChHhHHHHHhC--CCeEEEEccCHHHHHHHHHHcCCCccccccccccccccCceEEEECcccCCCccc
Confidence            34579999999999999999985  788999999 998886521                  25789999999983    


Q ss_pred             CCcccEEE
Q 034578           79 IPNADAVF   86 (90)
Q Consensus        79 ~p~~D~i~   86 (90)
                      .+.+|.|+
T Consensus       114 ~~~fd~v~  121 (218)
T PRK13255        114 LADVDAVY  121 (218)
T ss_pred             CCCeeEEE
Confidence            23378877

>KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only]

Probab=98.76  E-value=1e-08  Score=67.51  Aligned_cols=80  Identities=18%  Similarity=0.194  Sum_probs=57.7

Q ss_pred             cchhhhHHHHHhhcccCCCCC--CCeEEEecCCchHHHHHHHHHCCCCeEEEeeh-HHHHHhCCCCC-CeeEEEecCCCC
Q 034578            3 CTTKITMKAFVSHYKVDGFNN--IRSMVDVGGGTGTVLAEIVKSYPHIKGINFDL-QHVIATAPTHE-GVSHVGGDMFDA   78 (90)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~--~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~~-rv~~~~~d~~~~   78 (90)
                      .++...++..++.+.   ++.  ..-|||||||||.-+..+...  .-..+++|+ |.|++.|.+.+ .=.++-+|+-+.
T Consensus        31 ~IQ~em~eRaLELLa---lp~~~~~~iLDIGCGsGLSg~vL~~~--Gh~wiGvDiSpsML~~a~~~e~egdlil~DMG~G  105 (270)
T KOG1541|consen   31 LIQAEMAERALELLA---LPGPKSGLILDIGCGSGLSGSVLSDS--GHQWIGVDISPSMLEQAVERELEGDLILCDMGEG  105 (270)
T ss_pred             eehHHHHHHHHHHhh---CCCCCCcEEEEeccCCCcchheeccC--CceEEeecCCHHHHHHHHHhhhhcCeeeeecCCC
Confidence            345566666777666   444  678999999999988877765  477899999 99999997621 124667888774


Q ss_pred             CC---c-ccEEEe
Q 034578           79 IP---N-ADAVFM   87 (90)
Q Consensus        79 ~p---~-~D~i~l   87 (90)
                      +|   . ||.++.
T Consensus       106 lpfrpGtFDg~IS  118 (270)
T KOG1541|consen  106 LPFRPGTFDGVIS  118 (270)
T ss_pred             CCCCCCccceEEE
Confidence            33   3 887764

>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]

Probab=98.76  E-value=6.3e-09  Score=68.93  Aligned_cols=65  Identities=20%  Similarity=0.160  Sum_probs=49.0

Q ss_pred             CCCeEEEecCCchHHHHHHHHHCCCCeEEEeeh-HHHHHhCCCC---C--CeeEEEecCCC-CC--CcccEEEeec
Q 034578           23 NIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDL-QHVIATAPTH---E--GVSHVGGDMFD-AI--PNADAVFMKV   89 (90)
Q Consensus        23 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~---~--rv~~~~~d~~~-~~--p~~D~i~l~~   89 (90)
                      ...+|||||||-|.++..+++..  ++++++|+ +.+++.|+..   .  .+.+.+....+ ..  ..||+|++..
T Consensus        59 ~g~~vLDvGCGgG~Lse~mAr~G--a~VtgiD~se~~I~~Ak~ha~e~gv~i~y~~~~~edl~~~~~~FDvV~cmE  132 (243)
T COG2227          59 PGLRVLDVGCGGGILSEPLARLG--ASVTGIDASEKPIEVAKLHALESGVNIDYRQATVEDLASAGGQFDVVTCME  132 (243)
T ss_pred             CCCeEEEecCCccHhhHHHHHCC--CeeEEecCChHHHHHHHHhhhhccccccchhhhHHHHHhcCCCccEEEEhh
Confidence            35689999999999999999985  99999999 9999998853   1  23344444443 12  2499998754

>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB

Probab=98.75  E-value=1.4e-08  Score=71.14  Aligned_cols=64  Identities=16%  Similarity=0.167  Sum_probs=51.7

Q ss_pred             CCCeEEEecCCchHHHHHHHHHCCCCeEEEeeh-HHHHHhCCCC------CCeeEEEecCCCCC----CcccEEEee
Q 034578           23 NIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDL-QHVIATAPTH------EGVSHVGGDMFDAI----PNADAVFMK   88 (90)
Q Consensus        23 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~------~rv~~~~~d~~~~~----p~~D~i~l~   88 (90)
                      +..++||+|||+|.++..++..  ..+++++|+ |.+++.|+++      ++++|+.+|+.+..    ..+|+|++.
T Consensus       233 ~~~~vLDL~cG~G~~~l~la~~--~~~v~~vE~~~~av~~a~~N~~~~~~~~~~~~~~d~~~~~~~~~~~~D~vi~D  307 (374)
T TIGR02085       233 PVTQMWDLFCGVGGFGLHCAGP--DTQLTGIEIESEAIACAQQSAQMLGLDNLSFAALDSAKFATAQMSAPELVLVN  307 (374)
T ss_pred             CCCEEEEccCCccHHHHHHhhc--CCeEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHHHHhcCCCCCEEEEC
Confidence            3478999999999999999964  468999999 9999988752      47999999986522    238998863

This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.

>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy)

Probab=98.75  E-value=4.1e-08  Score=54.87  Aligned_cols=63  Identities=19%  Similarity=0.293  Sum_probs=51.2

Q ss_pred             eEEEecCCchHHHHHHHHHCCCCeEEEeeh-HHHHHhCC------CCCCeeEEEecCCCCC---C-cccEEEeec
Q 034578           26 SMVDVGGGTGTVLAEIVKSYPHIKGINFDL-QHVIATAP------THEGVSHVGGDMFDAI---P-NADAVFMKV   89 (90)
Q Consensus        26 ~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~------~~~rv~~~~~d~~~~~---p-~~D~i~l~~   89 (90)
                      +++|+|||+|.++..+++ .+..+++++|+ +..++.++      ...+++++.+|+.+..   + .+|++++..
T Consensus         1 ~ildig~G~G~~~~~~~~-~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~i~~~~   74 (107)
T cd02440           1 RVLDLGCGTGALALALAS-GPGARVTGVDISPVALELARKAAAALLADNVEVLKGDAEELPPEADESFDVIISDP   74 (107)
T ss_pred             CeEEEcCCccHHHHHHhc-CCCCEEEEEeCCHHHHHHHHHHHhcccccceEEEEcChhhhccccCCceEEEEEcc
Confidence            489999999999999998 67889999998 77777665      1367999999998832   2 389998764

There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).

>KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification]

Probab=98.75  E-value=5.3e-08  Score=65.78  Aligned_cols=75  Identities=16%  Similarity=0.366  Sum_probs=61.4

Q ss_pred             hHHHHHhhcccCCCCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeeh-HHHHHhCCC-------CCCeeEEEecCCC-C
Q 034578            8 TMKAFVSHYKVDGFNNIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDL-QHVIATAPT-------HEGVSHVGGDMFD-A   78 (90)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~-------~~rv~~~~~d~~~-~   78 (90)
                      +.+.|++.-+   ..+...||+||.|||.+...++++  ..+++++++ |.|++.-.+       ....+++.||++. +
T Consensus        46 v~~~I~~ka~---~k~tD~VLEvGPGTGnLT~~lLe~--~kkVvA~E~Dprmvael~krv~gtp~~~kLqV~~gD~lK~d  120 (315)
T KOG0820|consen   46 VIDQIVEKAD---LKPTDVVLEVGPGTGNLTVKLLEA--GKKVVAVEIDPRMVAELEKRVQGTPKSGKLQVLHGDFLKTD  120 (315)
T ss_pred             HHHHHHhccC---CCCCCEEEEeCCCCCHHHHHHHHh--cCeEEEEecCcHHHHHHHHHhcCCCccceeeEEecccccCC
Confidence            3556666666   677899999999999999999998  577899998 888775543       3679999999999 7


Q ss_pred             CCcccEEEe
Q 034578           79 IPNADAVFM   87 (90)
Q Consensus        79 ~p~~D~i~l   87 (90)
                      +|-+|.++-
T Consensus       121 ~P~fd~cVs  129 (315)
T KOG0820|consen  121 LPRFDGCVS  129 (315)
T ss_pred             Ccccceeec
Confidence            888898875

>PLN02781 Probable caffeoyl-CoA O-methyltransferase

Probab=98.71  E-value=2.8e-08  Score=65.75  Aligned_cols=68  Identities=18%  Similarity=0.306  Sum_probs=55.8

Q ss_pred             CCCCCeEEEecCCchHHHHHHHHHCC-CCeEEEeeh-HHHHHhCCC-------CCCeeEEEecCCCCC---------Ccc
Q 034578           21 FNNIRSMVDVGGGTGTVLAEIVKSYP-HIKGINFDL-QHVIATAPT-------HEGVSHVGGDMFDAI---------PNA   82 (90)
Q Consensus        21 ~~~~~~vlDvG~G~G~~~~~l~~~~p-~~~~~~~D~-p~~~~~a~~-------~~rv~~~~~d~~~~~---------p~~   82 (90)
                      ..+++++||+|||+|.-+..+++..| +.+++.+|+ |++++.|++       .++++++.+|..+.+         +.|
T Consensus        66 ~~~~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~~~gl~~~i~~~~gda~~~L~~l~~~~~~~~f  145 (234)
T PLN02781         66 IMNAKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKKAGVDHKINFIQSDALSALDQLLNNDPKPEF  145 (234)
T ss_pred             HhCCCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHHhCCCCCCC
Confidence            34578999999999999999998865 789999999 998888875       368999999997621         239


Q ss_pred             cEEEee
Q 034578           83 DAVFMK   88 (90)
Q Consensus        83 D~i~l~   88 (90)
                      |+|++-
T Consensus       146 D~VfiD  151 (234)
T PLN02781        146 DFAFVD  151 (234)
T ss_pred             CEEEEC
Confidence            999863

>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional

Probab=98.70  E-value=5.7e-08  Score=63.52  Aligned_cols=65  Identities=17%  Similarity=0.121  Sum_probs=50.1

Q ss_pred             CCCeEEEecCCchHHHHHHHHHCCCCeEEEeeh-HHHHHhCCC-----CCCeeEEEecCCCC---CCc-ccEEEeec
Q 034578           23 NIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDL-QHVIATAPT-----HEGVSHVGGDMFDA---IPN-ADAVFMKV   89 (90)
Q Consensus        23 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~-----~~rv~~~~~d~~~~---~p~-~D~i~l~~   89 (90)
                      +..+|||+|||+|.++..+++.  ..+++++|+ +.+++.+++     ..+++++..|+.+.   .+. +|+|++++
T Consensus        48 ~~~~vLdiG~G~G~~~~~l~~~--~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Ii~~~  122 (233)
T PRK05134         48 FGKRVLDVGCGGGILSESMARL--GADVTGIDASEENIEVARLHALESGLKIDYRQTTAEELAAEHPGQFDVVTCME  122 (233)
T ss_pred             CCCeEEEeCCCCCHHHHHHHHc--CCeEEEEcCCHHHHHHHHHHHHHcCCceEEEecCHHHhhhhcCCCccEEEEhh
Confidence            4678999999999999999886  467999999 888887764     23577888877552   223 99998764

>TIGR00417 speE spermidine synthase

Probab=98.67  E-value=6.4e-08  Score=65.11  Aligned_cols=66  Identities=26%  Similarity=0.358  Sum_probs=53.4

Q ss_pred             CCCeEEEecCCchHHHHHHHHHCCCCeEEEeeh-HHHHHhCCC----------CCCeeEEEecCCCC---CC-cccEEEe
Q 034578           23 NIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDL-QHVIATAPT----------HEGVSHVGGDMFDA---IP-NADAVFM   87 (90)
Q Consensus        23 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~----------~~rv~~~~~d~~~~---~p-~~D~i~l   87 (90)
                      .+.+||+||||+|.++..+++..+..+++.+|+ |.+++.+++          .+|++++.+|.++.   .+ .+|+|++
T Consensus        72 ~p~~VL~iG~G~G~~~~~ll~~~~~~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~~l~~~~~~yDvIi~  151 (270)
T TIGR00417        72 NPKHVLVIGGGDGGVLREVLKHKSVEKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDGFKFLADTENTFDVIIV  151 (270)
T ss_pred             CCCEEEEEcCCchHHHHHHHhCCCcceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECchHHHHHhCCCCccEEEE
Confidence            457999999999999999998766778999999 888887765          26788998887652   23 3999987


Q ss_pred             e
Q 034578           88 K   88 (90)
Q Consensus        88 ~   88 (90)
                      .
T Consensus       152 D  152 (270)
T TIGR00417       152 D  152 (270)
T ss_pred             e
Confidence            4

the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.

>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase

Probab=98.66  E-value=3.2e-08  Score=68.97  Aligned_cols=51  Identities=8%  Similarity=0.226  Sum_probs=44.3

Q ss_pred             CeEEEecCCchHHHHHHHHHCCCCeEEEeeh-HHHHHhCCCC------CCeeEEEecCCC
Q 034578           25 RSMVDVGGGTGTVLAEIVKSYPHIKGINFDL-QHVIATAPTH------EGVSHVGGDMFD   77 (90)
Q Consensus        25 ~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~------~rv~~~~~d~~~   77 (90)
                      .++||++||+|.++..+++...  +++++|. +++++.++++      ++++++.+|+.+
T Consensus       199 ~~vlDl~~G~G~~sl~la~~~~--~v~~vE~~~~av~~a~~n~~~~~~~~v~~~~~d~~~  256 (353)
T TIGR02143       199 GDLLELYCGNGNFSLALAQNFR--RVLATEIAKPSVNAAQYNIAANNIDNVQIIRMSAEE  256 (353)
T ss_pred             CcEEEEeccccHHHHHHHHhCC--EEEEEECCHHHHHHHHHHHHHcCCCcEEEEEcCHHH
Confidence            4799999999999999998863  8999999 9999988762      479999999865

This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.

>PRK14904 16S rRNA methyltransferase B; Provisional

Probab=98.65  E-value=1.5e-07  Score=67.31  Aligned_cols=67  Identities=13%  Similarity=0.164  Sum_probs=53.7

Q ss_pred             CCCCCeEEEecCCchHHHHHHHHHCC-CCeEEEeeh-HHHHHhCCCC------CCeeEEEecCCCCCC-c-ccEEEe
Q 034578           21 FNNIRSMVDVGGGTGTVLAEIVKSYP-HIKGINFDL-QHVIATAPTH------EGVSHVGGDMFDAIP-N-ADAVFM   87 (90)
Q Consensus        21 ~~~~~~vlDvG~G~G~~~~~l~~~~p-~~~~~~~D~-p~~~~~a~~~------~rv~~~~~d~~~~~p-~-~D~i~l   87 (90)
                      ..+..+|||+|||+|..+..+++..+ ..+++++|+ +.+++.++++      .+++++.+|..+..+ . ||.|++
T Consensus       248 ~~~g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~v~~~~~Da~~~~~~~~fD~Vl~  324 (445)
T PRK14904        248 PQPGSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIRSHASALGITIIETIEGDARSFSPEEQPDAILL  324 (445)
T ss_pred             CCCCCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhCCCeEEEEeCcccccccCCCCCEEEE
Confidence            34567999999999999999888753 568999999 9998887652      468999999877333 3 899986

>KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis]

Probab=98.64  E-value=7.5e-08  Score=61.76  Aligned_cols=84  Identities=14%  Similarity=0.247  Sum_probs=62.8

Q ss_pred             cchhhhHHHHHhhcccCCCC--CCCeEEEecCCchHHHHHHHHHC-CCCeEEEeeh-HHHHHhCCC-----CCCeeEEEe
Q 034578            3 CTTKITMKAFVSHYKVDGFN--NIRSMVDVGGGTGTVLAEIVKSY-PHIKGINFDL-QHVIATAPT-----HEGVSHVGG   73 (90)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~--~~~~vlDvG~G~G~~~~~l~~~~-p~~~~~~~D~-p~~~~~a~~-----~~rv~~~~~   73 (90)
                      +.+..+.+++-+....  +.  .+.-+++||||+|.++..|++.. |++.....|+ |++++.+++     ..++..+..
T Consensus        23 EDTFlLlDaLekd~~e--L~~~~~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~~~Tl~TA~~n~~~~~~V~t  100 (209)
T KOG3191|consen   23 EDTFLLLDALEKDAAE--LKGHNPEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEALEATLETARCNRVHIDVVRT  100 (209)
T ss_pred             chhhHHHHHHHHHHHH--HhhcCceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhcCCccceeeh
Confidence            4455555555444432  22  36789999999999999999884 8888999999 999887654     356788999


Q ss_pred             cCCCCCC--cccEEEee
Q 034578           74 DMFDAIP--NADAVFMK   88 (90)
Q Consensus        74 d~~~~~p--~~D~i~l~   88 (90)
                      |+.+.+.  +.|+++++
T Consensus       101 dl~~~l~~~~VDvLvfN  117 (209)
T KOG3191|consen  101 DLLSGLRNESVDVLVFN  117 (209)
T ss_pred             hHHhhhccCCccEEEEC
Confidence            9988543  38998876

>PLN02823 spermine synthase

Probab=98.63  E-value=1.6e-07  Score=65.25  Aligned_cols=65  Identities=18%  Similarity=0.261  Sum_probs=55.3

Q ss_pred             CCCeEEEecCCchHHHHHHHHHCCCCeEEEeeh-HHHHHhCCC----------CCCeeEEEecCCCC---CC-cccEEEe
Q 034578           23 NIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDL-QHVIATAPT----------HEGVSHVGGDMFDA---IP-NADAVFM   87 (90)
Q Consensus        23 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~----------~~rv~~~~~d~~~~---~p-~~D~i~l   87 (90)
                      .+++||.+|+|.|.++.++++..+..+++.+|+ |.+++.+++          .+|++++.+|.++.   .+ .||+|++
T Consensus       103 ~pk~VLiiGgG~G~~~re~l~~~~~~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~Da~~~L~~~~~~yDvIi~  182 (336)
T PLN02823        103 NPKTVFIMGGGEGSTAREVLRHKTVEKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIINDARAELEKRDEKFDVIIG  182 (336)
T ss_pred             CCCEEEEECCCchHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhcccccccccCCceEEEEChhHHHHhhCCCCccEEEe
Confidence            567999999999999999999777778999999 999998874          37899999998773   23 3999987

>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated

Probab=98.62  E-value=5.3e-08  Score=68.06  Aligned_cols=51  Identities=10%  Similarity=0.257  Sum_probs=44.1

Q ss_pred             CeEEEecCCchHHHHHHHHHCCCCeEEEeeh-HHHHHhCCCC------CCeeEEEecCCC
Q 034578           25 RSMVDVGGGTGTVLAEIVKSYPHIKGINFDL-QHVIATAPTH------EGVSHVGGDMFD   77 (90)
Q Consensus        25 ~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~------~rv~~~~~d~~~   77 (90)
                      .++||++||+|.++..+++...  +++++|. +.+++.++++      ++++++.+|..+
T Consensus       208 ~~vLDl~~G~G~~sl~la~~~~--~v~~vE~~~~ai~~a~~N~~~~~~~~v~~~~~d~~~  265 (362)
T PRK05031        208 GDLLELYCGNGNFTLALARNFR--RVLATEISKPSVAAAQYNIAANGIDNVQIIRMSAEE  265 (362)
T ss_pred             CeEEEEeccccHHHHHHHhhCC--EEEEEECCHHHHHHHHHHHHHhCCCcEEEEECCHHH
Confidence            5799999999999999998864  7999999 9999888762      479999999865

>PRK14903 16S rRNA methyltransferase B; Provisional

Probab=98.59  E-value=2.1e-07  Score=66.43  Aligned_cols=67  Identities=13%  Similarity=0.159  Sum_probs=54.3

Q ss_pred             CCCCCeEEEecCCchHHHHHHHHHC-CCCeEEEeeh-HHHHHhCCCC------CCeeEEEecCCC-C--CCc-ccEEEe
Q 034578           21 FNNIRSMVDVGGGTGTVLAEIVKSY-PHIKGINFDL-QHVIATAPTH------EGVSHVGGDMFD-A--IPN-ADAVFM   87 (90)
Q Consensus        21 ~~~~~~vlDvG~G~G~~~~~l~~~~-p~~~~~~~D~-p~~~~~a~~~------~rv~~~~~d~~~-~--~p~-~D~i~l   87 (90)
                      ..+..+|||+|||+|..+..+++.. +..+++++|+ +.+++.++++      .+++++.+|..+ +  .++ ||.|++
T Consensus       235 ~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~~n~~r~g~~~v~~~~~Da~~l~~~~~~~fD~Vl~  313 (431)
T PRK14903        235 LEPGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEKHAKRLKLSSIEIKIADAERLTEYVQDTFDRILV  313 (431)
T ss_pred             CCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECchhhhhhhhhccCCEEEE
Confidence            4566799999999999999999886 5689999999 9998887652      468899999865 2  233 899986

>TIGR00095 RNA methyltransferase, RsmD family

Probab=98.59  E-value=1e-07  Score=61.31  Aligned_cols=64  Identities=16%  Similarity=0.181  Sum_probs=50.7

Q ss_pred             CCCeEEEecCCchHHHHHHHHHCCCCeEEEeeh-HHHHHhCCC-------CCCeeEEEecCCCC---C---Cc-ccEEEe
Q 034578           23 NIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDL-QHVIATAPT-------HEGVSHVGGDMFDA---I---PN-ADAVFM   87 (90)
Q Consensus        23 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~-------~~rv~~~~~d~~~~---~---p~-~D~i~l   87 (90)
                      ...++||++||+|.++.+++++.. .+++++|. +.+++.+++       .++++++.+|.++.   +   .. +|+|++
T Consensus        49 ~g~~vLDLfaGsG~lglea~srga-~~v~~vE~~~~a~~~~~~N~~~~~~~~~~~~~~~D~~~~l~~~~~~~~~~dvv~~  127 (189)
T TIGR00095        49 QGAHLLDVFAGSGLLGEEALSRGA-KVAFLEEDDRKANQTLKENLALLKSGEQAEVVRNSALRALKFLAKKPTFDNVIYL  127 (189)
T ss_pred             CCCEEEEecCCCcHHHHHHHhCCC-CEEEEEeCCHHHHHHHHHHHHHhCCcccEEEEehhHHHHHHHhhccCCCceEEEE
Confidence            357899999999999999999865 37999999 888887765       25789999999652   2   12 677775

This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.

>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2

Probab=98.59  E-value=1.4e-07  Score=60.88  Aligned_cols=64  Identities=25%  Similarity=0.509  Sum_probs=49.0

Q ss_pred             CeEEEecCCchHHHHHHHHHCCCCeEEEeeh-HHHHHhCCC------CCCeeEEEecCCCC----CC-c-ccEEEee
Q 034578           25 RSMVDVGGGTGTVLAEIVKSYPHIKGINFDL-QHVIATAPT------HEGVSHVGGDMFDA----IP-N-ADAVFMK   88 (90)
Q Consensus        25 ~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~------~~rv~~~~~d~~~~----~p-~-~D~i~l~   88 (90)
                      ..+||||||.|.+...+++++|+..++++|+ ...+..+.+      ..++.++.+|...-    ++ . .|-|++.
T Consensus        19 ~l~lEIG~G~G~~l~~~A~~~Pd~n~iGiE~~~~~v~~a~~~~~~~~l~Nv~~~~~da~~~l~~~~~~~~v~~i~i~   95 (195)
T PF02390_consen   19 PLILEIGCGKGEFLIELAKRNPDINFIGIEIRKKRVAKALRKAEKRGLKNVRFLRGDARELLRRLFPPGSVDRIYIN   95 (195)
T ss_dssp             EEEEEET-TTSHHHHHHHHHSTTSEEEEEES-HHHHHHHHHHHHHHTTSSEEEEES-CTTHHHHHSTTTSEEEEEEE
T ss_pred             CeEEEecCCCCHHHHHHHHHCCCCCEEEEecchHHHHHHHHHHHhhcccceEEEEccHHHHHhhcccCCchheEEEe
Confidence            4899999999999999999999999999998 666555432      48999999998761    33 2 5666553

1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....

>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB

Probab=98.58  E-value=2.9e-07  Score=65.48  Aligned_cols=76  Identities=13%  Similarity=0.195  Sum_probs=55.9

Q ss_pred             HHHHHhhcccCCCCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeeh-HHHHHhCCCC-------CCeeEEEecCCCC-C
Q 034578            9 MKAFVSHYKVDGFNNIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDL-QHVIATAPTH-------EGVSHVGGDMFDA-I   79 (90)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~-------~rv~~~~~d~~~~-~   79 (90)
                      ...++..++   ..+..+|||+|||+|..+..+++..+..+++++|+ +.+++.++++       .++.+..+|.... .
T Consensus       227 s~~~~~~L~---~~~g~~VLDlcag~G~kt~~la~~~~~~~v~a~D~~~~~l~~~~~n~~r~g~~~~v~~~~~d~~~~~~  303 (426)
T TIGR00563       227 AQWVATWLA---PQNEETILDACAAPGGKTTHILELAPQAQVVALDIHEHRLKRVYENLKRLGLTIKAETKDGDGRGPSQ  303 (426)
T ss_pred             HHHHHHHhC---CCCCCeEEEeCCCccHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeccccccccc
Confidence            344444455   45668999999999999999999988889999999 8888877652       1344466776542 1


Q ss_pred             --C--cccEEEe
Q 034578           80 --P--NADAVFM   87 (90)
Q Consensus        80 --p--~~D~i~l   87 (90)
                        +  .+|.|++
T Consensus       304 ~~~~~~fD~Vll  315 (426)
T TIGR00563       304 WAENEQFDRILL  315 (426)
T ss_pred             cccccccCEEEE
Confidence              2  2899985

The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.

>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]

Probab=98.58  E-value=3.5e-07  Score=61.15  Aligned_cols=75  Identities=20%  Similarity=0.329  Sum_probs=62.0

Q ss_pred             HHHHhhcccCCCCCCCeEEEecCCchHHHHHHHHH-CCCCeEEEeeh-HHHHHhCCCC-------CCeeEEEecCCCC-C
Q 034578           10 KAFVSHYKVDGFNNIRSMVDVGGGTGTVLAEIVKS-YPHIKGINFDL-QHVIATAPTH-------EGVSHVGGDMFDA-I   79 (90)
Q Consensus        10 ~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~-~p~~~~~~~D~-p~~~~~a~~~-------~rv~~~~~d~~~~-~   79 (90)
                      ..|+....   ..+..+|+|.|.|||.++..|++. .|..+++.+|+ ++..+.|+++       +++++..+|+.+. .
T Consensus        84 ~~I~~~~g---i~pg~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~~l~d~v~~~~~Dv~~~~~  160 (256)
T COG2519          84 GYIVARLG---ISPGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEFGLGDRVTLKLGDVREGID  160 (256)
T ss_pred             HHHHHHcC---CCCCCEEEEcccCchHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHHhccccceEEEecccccccc
Confidence            34555555   677899999999999999999975 68899999999 8988888763       6699999999884 3


Q ss_pred             Cc-ccEEEe
Q 034578           80 PN-ADAVFM   87 (90)
Q Consensus        80 p~-~D~i~l   87 (90)
                      +. +|++++
T Consensus       161 ~~~vDav~L  169 (256)
T COG2519         161 EEDVDAVFL  169 (256)
T ss_pred             ccccCEEEE
Confidence            43 999986

>TIGR00478 tly hemolysin TlyA family protein

Probab=98.56  E-value=3.9e-07  Score=60.27  Aligned_cols=77  Identities=16%  Similarity=0.192  Sum_probs=49.0

Q ss_pred             HHHHhhcccCCCCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeeh-HHHHHh-CCCCCCeeE-EEecCCC--------C
Q 034578           10 KAFVSHYKVDGFNNIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDL-QHVIAT-APTHEGVSH-VGGDMFD--------A   78 (90)
Q Consensus        10 ~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~-a~~~~rv~~-~~~d~~~--------~   78 (90)
                      ..+++.++-  .....++||+|||||.++..++++ +..+++++|. +.++.. .++++|+.. -..|+..        .
T Consensus        64 ~~~l~~~~~--~~~~~~vlDiG~gtG~~t~~l~~~-ga~~v~avD~~~~~l~~~l~~~~~v~~~~~~ni~~~~~~~~~~d  140 (228)
T TIGR00478        64 KEALEEFNI--DVKNKIVLDVGSSTGGFTDCALQK-GAKEVYGVDVGYNQLAEKLRQDERVKVLERTNIRYVTPADIFPD  140 (228)
T ss_pred             HHHHHhcCC--CCCCCEEEEcccCCCHHHHHHHHc-CCCEEEEEeCCHHHHHHHHhcCCCeeEeecCCcccCCHhHcCCC
Confidence            344454441  134568999999999999999986 4568999999 755553 455555432 2223321        2


Q ss_pred             CCcccEEEeec
Q 034578           79 IPNADAVFMKV   89 (90)
Q Consensus        79 ~p~~D~i~l~~   89 (90)
                      ++.+|+.+.+.
T Consensus       141 ~~~~DvsfiS~  151 (228)
T TIGR00478       141 FATFDVSFISL  151 (228)
T ss_pred             ceeeeEEEeeh
Confidence            23478888763

Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).

>PRK14901 16S rRNA methyltransferase B; Provisional

Probab=98.56  E-value=3.2e-07  Score=65.43  Aligned_cols=67  Identities=9%  Similarity=0.055  Sum_probs=53.9

Q ss_pred             CCCCCeEEEecCCchHHHHHHHHHC-CCCeEEEeeh-HHHHHhCCCC------CCeeEEEecCCC-C----C-C-cccEE
Q 034578           21 FNNIRSMVDVGGGTGTVLAEIVKSY-PHIKGINFDL-QHVIATAPTH------EGVSHVGGDMFD-A----I-P-NADAV   85 (90)
Q Consensus        21 ~~~~~~vlDvG~G~G~~~~~l~~~~-p~~~~~~~D~-p~~~~~a~~~------~rv~~~~~d~~~-~----~-p-~~D~i   85 (90)
                      ..+..+|||+|||+|..+..+++.. +..+++++|+ +.+++.++++      .+++++.+|..+ +    . + .+|.|
T Consensus       250 ~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n~~r~g~~~v~~~~~D~~~~~~~~~~~~~~fD~V  329 (434)
T PRK14901        250 PQPGEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQENAQRLGLKSIKILAADSRNLLELKPQWRGYFDRI  329 (434)
T ss_pred             CCCcCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCeEEEEeCChhhcccccccccccCCEE
Confidence            4456899999999999999999985 4579999999 8888877652      468999999876 2    1 2 38999


Q ss_pred             Ee
Q 034578           86 FM   87 (90)
Q Consensus        86 ~l   87 (90)
                      ++
T Consensus       330 l~  331 (434)
T PRK14901        330 LL  331 (434)
T ss_pred             EE
Confidence            86

>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional

Probab=98.55  E-value=1.5e-07  Score=70.66  Aligned_cols=65  Identities=12%  Similarity=0.118  Sum_probs=53.4

Q ss_pred             CCCeEEEecCCchHHHHHHHHHCCCCeEEEeeh-HHHHHhCCCC--------CCeeEEEecCCCC---CC-cccEEEee
Q 034578           23 NIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDL-QHVIATAPTH--------EGVSHVGGDMFDA---IP-NADAVFMK   88 (90)
Q Consensus        23 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~--------~rv~~~~~d~~~~---~p-~~D~i~l~   88 (90)
                      +..+|||+|||+|.+++.+++. ...+++++|+ +.+++.++++        ++++++.+|+++.   .+ .||+|++.
T Consensus       538 ~g~rVLDlf~gtG~~sl~aa~~-Ga~~V~~vD~s~~al~~a~~N~~~ng~~~~~v~~i~~D~~~~l~~~~~~fDlIilD  615 (702)
T PRK11783        538 KGKDFLNLFAYTGTASVHAALG-GAKSTTTVDMSNTYLEWAERNFALNGLSGRQHRLIQADCLAWLKEAREQFDLIFID  615 (702)
T ss_pred             CCCeEEEcCCCCCHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHHHHhCCCccceEEEEccHHHHHHHcCCCcCEEEEC
Confidence            3579999999999999999986 3346999999 9999988762        4799999998773   23 39999873

>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase

Probab=98.54  E-value=2.1e-07  Score=60.35  Aligned_cols=65  Identities=20%  Similarity=0.107  Sum_probs=50.0

Q ss_pred             CCCeEEEecCCchHHHHHHHHHCCCCeEEEeeh-HHHHHhCCCC-----C-CeeEEEecCCC-C--CCc-ccEEEeec
Q 034578           23 NIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDL-QHVIATAPTH-----E-GVSHVGGDMFD-A--IPN-ADAVFMKV   89 (90)
Q Consensus        23 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~-----~-rv~~~~~d~~~-~--~p~-~D~i~l~~   89 (90)
                      +..+|||+|||+|.++..+++..  .+++++|+ +.+++.++++     . ++++...|+.+ +  .+. +|+|++.+
T Consensus        45 ~~~~vLdlG~G~G~~~~~l~~~~--~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~i~~~~  120 (224)
T TIGR01983        45 FGLRVLDVGCGGGLLSEPLARLG--ANVTGIDASEENIEVAKLHAKKDPLLKIEYRCTSVEDLAEKGAKSFDVVTCME  120 (224)
T ss_pred             CCCeEEEECCCCCHHHHHHHhcC--CeEEEEeCCHHHHHHHHHHHHHcCCCceEEEeCCHHHhhcCCCCCccEEEehh
Confidence            46799999999999999998864  45999999 8888777641     2 58888888765 2  223 99998764

This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.

>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase

Probab=98.53  E-value=2.8e-07  Score=58.75  Aligned_cols=84  Identities=18%  Similarity=0.167  Sum_probs=62.3

Q ss_pred             CcchhhhHHHHHhhcccCCCCCCCeEEEecCCchHHHHHHHHHCCCCe---------EEEeeh-HHHHHhCCC-------
Q 034578            2 ACTTKITMKAFVSHYKVDGFNNIRSMVDVGGGTGTVLAEIVKSYPHIK---------GINFDL-QHVIATAPT-------   64 (90)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~---------~~~~D~-p~~~~~a~~-------   64 (90)
                      +.+...++..++....   +.+...|+|-=||+|.++++.+...++..         +++.|+ +.+++.+++       
T Consensus        10 a~L~~~lA~~ll~la~---~~~~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~ag~   86 (179)
T PF01170_consen   10 APLRPTLAAALLNLAG---WRPGDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGARENLKAAGV   86 (179)
T ss_dssp             TSS-HHHHHHHHHHTT-----TTS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHHHHHTT-
T ss_pred             CCCCHHHHHHHHHHhC---CCCCCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHHHHhccc
Confidence            4556778888888777   56678999999999999999988887776         999999 999988775       


Q ss_pred             CCCeeEEEecCCC-CC-Cc-ccEEEee
Q 034578           65 HEGVSHVGGDMFD-AI-PN-ADAVFMK   88 (90)
Q Consensus        65 ~~rv~~~~~d~~~-~~-p~-~D~i~l~   88 (90)
                      ...+.+...|+.+ ++ +. +|.|+.+
T Consensus        87 ~~~i~~~~~D~~~l~~~~~~~d~Ivtn  113 (179)
T PF01170_consen   87 EDYIDFIQWDARELPLPDGSVDAIVTN  113 (179)
T ss_dssp             CGGEEEEE--GGGGGGTTSBSCEEEEE
T ss_pred             CCceEEEecchhhcccccCCCCEEEEC
Confidence            2568999999987 53 33 7988864

It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.

>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e

Probab=98.53  E-value=2.7e-07  Score=61.81  Aligned_cols=68  Identities=15%  Similarity=0.308  Sum_probs=56.1

Q ss_pred             hhhhHHHHHhhcccCCCCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeeh-HHHHHhCCC----CCCeeEEEecCCC
Q 034578            5 TKITMKAFVSHYKVDGFNNIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDL-QHVIATAPT----HEGVSHVGGDMFD   77 (90)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~----~~rv~~~~~d~~~   77 (90)
                      +..+++.+++.++   ..+...|+|+|.|+|.++..|++..  .+++++|. +...+..++    .+|++++.+|+++
T Consensus        15 ~~~~~~~Iv~~~~---~~~~~~VlEiGpG~G~lT~~L~~~~--~~v~~vE~d~~~~~~L~~~~~~~~~~~vi~~D~l~   87 (262)
T PF00398_consen   15 DPNIADKIVDALD---LSEGDTVLEIGPGPGALTRELLKRG--KRVIAVEIDPDLAKHLKERFASNPNVEVINGDFLK   87 (262)
T ss_dssp             HHHHHHHHHHHHT---CGTTSEEEEESSTTSCCHHHHHHHS--SEEEEEESSHHHHHHHHHHCTTCSSEEEEES-TTT
T ss_pred             CHHHHHHHHHhcC---CCCCCEEEEeCCCCccchhhHhccc--CcceeecCcHhHHHHHHHHhhhcccceeeecchhc
Confidence            4566788888887   5677899999999999999999987  77888888 776665443    5899999999998

g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....

>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional

Probab=98.51  E-value=1.7e-07  Score=66.33  Aligned_cols=65  Identities=15%  Similarity=0.209  Sum_probs=51.9

Q ss_pred             CCCeEEEecCCchHHHHHHHHHCCCCeEEEeeh-HHHHHhCCCC--------CCeeEEEecCCCCC------C-cccEEE
Q 034578           23 NIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDL-QHVIATAPTH--------EGVSHVGGDMFDAI------P-NADAVF   86 (90)
Q Consensus        23 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~--------~rv~~~~~d~~~~~------p-~~D~i~   86 (90)
                      +..+|||+|||+|.++...+.. ...+++++|+ +.+++.++++        ++++++.+|+++.+      . .||+|+
T Consensus       220 ~g~rVLDlfsgtG~~~l~aa~~-ga~~V~~VD~s~~al~~a~~N~~~Ngl~~~~v~~i~~D~~~~l~~~~~~~~~fDlVi  298 (396)
T PRK15128        220 ENKRVLNCFSYTGGFAVSALMG-GCSQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYRDRGEKFDVIV  298 (396)
T ss_pred             CCCeEEEeccCCCHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHHHHcCCCCCcEEEEEccHHHHHHHHHhcCCCCCEEE
Confidence            4578999999999999877653 4558999999 9999888761        37899999998732      2 389999


Q ss_pred             ee
Q 034578           87 MK   88 (90)
Q Consensus        87 l~   88 (90)
                      +.
T Consensus       299 lD  300 (396)
T PRK15128        299 MD  300 (396)
T ss_pred             EC
Confidence            75

>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]

Probab=98.50  E-value=6e-07  Score=61.05  Aligned_cols=66  Identities=23%  Similarity=0.344  Sum_probs=57.5

Q ss_pred             CCCeEEEecCCchHHHHHHHHHCCCCeEEEeeh-HHHHHhCCC----------CCCeeEEEecCCC---CCCc-ccEEEe
Q 034578           23 NIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDL-QHVIATAPT----------HEGVSHVGGDMFD---AIPN-ADAVFM   87 (90)
Q Consensus        23 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~----------~~rv~~~~~d~~~---~~p~-~D~i~l   87 (90)
                      .+++||=||+|.|..++++++..+.-+++.+|+ |.+++.+++          .+|++++.+|-.+   ..+. +|+|++
T Consensus        76 ~pk~VLiiGgGdG~tlRevlkh~~ve~i~~VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg~~~v~~~~~~fDvIi~  155 (282)
T COG0421          76 NPKRVLIIGGGDGGTLREVLKHLPVERITMVEIDPAVIELARKYLPEPSGGADDPRVEIIIDDGVEFLRDCEEKFDVIIV  155 (282)
T ss_pred             CCCeEEEECCCccHHHHHHHhcCCcceEEEEEcCHHHHHHHHHhccCcccccCCCceEEEeccHHHHHHhCCCcCCEEEE
Confidence            346999999999999999999999899999999 999999876          2899999999887   3444 999987


Q ss_pred             e
Q 034578           88 K   88 (90)
Q Consensus        88 ~   88 (90)
                      -
T Consensus       156 D  156 (282)
T COG0421         156 D  156 (282)
T ss_pred             c
Confidence            3

>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase

Probab=98.50  E-value=5.4e-07  Score=60.49  Aligned_cols=67  Identities=12%  Similarity=0.090  Sum_probs=52.9

Q ss_pred             CCCCCeEEEecCCchHHHHHHHHHCC-CCeEEEeeh-HHHHHhCCCC------CCeeEEEecCCC-C--CCcccEEEe
Q 034578           21 FNNIRSMVDVGGGTGTVLAEIVKSYP-HIKGINFDL-QHVIATAPTH------EGVSHVGGDMFD-A--IPNADAVFM   87 (90)
Q Consensus        21 ~~~~~~vlDvG~G~G~~~~~l~~~~p-~~~~~~~D~-p~~~~~a~~~------~rv~~~~~d~~~-~--~p~~D~i~l   87 (90)
                      ..+..+|||+|||+|..+..+++..+ ..+++++|+ +.+++.++++      .+++++.+|... +  .+.+|.|++
T Consensus        69 ~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~~~~~~fD~Vl~  146 (264)
T TIGR00446        69 PDPPERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIANINRCGVLNVAVTNFDGRVFGAAVPKFDAILL  146 (264)
T ss_pred             CCCcCEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCCcEEEecCCHHHhhhhccCCCEEEE
Confidence            44567999999999999999998864 468999999 9988877652      468888888654 2  234899986

>PRK13256 thiopurine S-methyltransferase; Reviewed

Probab=98.50  E-value=7.3e-07  Score=58.94  Aligned_cols=63  Identities=13%  Similarity=0.146  Sum_probs=51.1

Q ss_pred             CCCeEEEecCCchHHHHHHHHHCCCCeEEEeeh-HHHHHhCCC------------------CCCeeEEEecCCC-CC---
Q 034578           23 NIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDL-QHVIATAPT------------------HEGVSHVGGDMFD-AI---   79 (90)
Q Consensus        23 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~------------------~~rv~~~~~d~~~-~~---   79 (90)
                      +..+||+.|||.|.-+..|+++  +.+++++|+ |.+++.+.+                  ..++++..+|||+ +.   
T Consensus        43 ~~~rvLvPgCGkg~D~~~LA~~--G~~V~GvDlS~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gD~f~l~~~~~  120 (226)
T PRK13256         43 DSSVCLIPMCGCSIDMLFFLSK--GVKVIGIELSEKAVLSFFSQNTINYEVIHGNDYKLYKGDDIEIYVADIFNLPKIAN  120 (226)
T ss_pred             CCCeEEEeCCCChHHHHHHHhC--CCcEEEEecCHHHHHHHHHHcCCCcceecccccceeccCceEEEEccCcCCCcccc
Confidence            4579999999999999999997  677999999 999888521                  3579999999998 32   


Q ss_pred             --CcccEEEe
Q 034578           80 --PNADAVFM   87 (90)
Q Consensus        80 --p~~D~i~l   87 (90)
                        ..+|+|+=
T Consensus       121 ~~~~fD~VyD  130 (226)
T PRK13256        121 NLPVFDIWYD  130 (226)
T ss_pred             ccCCcCeeee
Confidence              13788763

>KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms]

Probab=98.49  E-value=2.8e-07  Score=63.89  Aligned_cols=67  Identities=19%  Similarity=0.262  Sum_probs=54.0

Q ss_pred             CCCCeEEEecCCchHHHHHHHHHCCCCeEEEeehHHHHHhCCC-------CCCeeEEEecCCC-CCC-c-ccEEEeec
Q 034578           22 NNIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDLQHVIATAPT-------HEGVSHVGGDMFD-AIP-N-ADAVFMKV   89 (90)
Q Consensus        22 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~p~~~~~a~~-------~~rv~~~~~d~~~-~~p-~-~D~i~l~~   89 (90)
                      -+...|||||||||.++...+++. ..++.++|-.++.+.|++       .+.+++++|...+ .+| + .|+|+.-|
T Consensus        59 f~dK~VlDVGcGtGILS~F~akAG-A~~V~aVe~S~ia~~a~~iv~~N~~~~ii~vi~gkvEdi~LP~eKVDiIvSEW  135 (346)
T KOG1499|consen   59 FKDKTVLDVGCGTGILSMFAAKAG-ARKVYAVEASSIADFARKIVKDNGLEDVITVIKGKVEDIELPVEKVDIIVSEW  135 (346)
T ss_pred             cCCCEEEEcCCCccHHHHHHHHhC-cceEEEEechHHHHHHHHHHHhcCccceEEEeecceEEEecCccceeEEeehh
Confidence            356899999999999999999987 678999997666666654       3669999999887 566 3 89998654

>KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription]

Probab=98.49  E-value=5.4e-07  Score=62.91  Aligned_cols=74  Identities=18%  Similarity=0.299  Sum_probs=59.1

Q ss_pred             HHHHhhcccCCCCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeehHHHHHhCCC-------CCCeeEEEecCCC-CCCc
Q 034578           10 KAFVSHYKVDGFNNIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDLQHVIATAPT-------HEGVSHVGGDMFD-AIPN   81 (90)
Q Consensus        10 ~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~p~~~~~a~~-------~~rv~~~~~d~~~-~~p~   81 (90)
                      .++++...+  | +.+.|||||||+|.++.-.+++. ..++.+++-.+|.+.|++       .+|+.+++|-+.+ .+|+
T Consensus       167 ~Ail~N~sD--F-~~kiVlDVGaGSGILS~FAaqAG-A~~vYAvEAS~MAqyA~~Lv~~N~~~~rItVI~GKiEdieLPE  242 (517)
T KOG1500|consen  167 RAILENHSD--F-QDKIVLDVGAGSGILSFFAAQAG-AKKVYAVEASEMAQYARKLVASNNLADRITVIPGKIEDIELPE  242 (517)
T ss_pred             HHHHhcccc--c-CCcEEEEecCCccHHHHHHHHhC-cceEEEEehhHHHHHHHHHHhcCCccceEEEccCccccccCch
Confidence            455555543  5 35789999999999998877764 467899998888888875       4899999999988 8897


Q ss_pred             -ccEEEe
Q 034578           82 -ADAVFM   87 (90)
Q Consensus        82 -~D~i~l   87 (90)
                       +|+++.
T Consensus       243 k~DviIS  249 (517)
T KOG1500|consen  243 KVDVIIS  249 (517)
T ss_pred             hccEEEe
Confidence             999874

>PLN02476 O-methyltransferase

Probab=98.46  E-value=4.3e-07  Score=61.65  Aligned_cols=67  Identities=15%  Similarity=0.130  Sum_probs=55.4

Q ss_pred             CCCCCeEEEecCCchHHHHHHHHHCC-CCeEEEeeh-HHHHHhCCC-------CCCeeEEEecCCCC---C------Ccc
Q 034578           21 FNNIRSMVDVGGGTGTVLAEIVKSYP-HIKGINFDL-QHVIATAPT-------HEGVSHVGGDMFDA---I------PNA   82 (90)
Q Consensus        21 ~~~~~~vlDvG~G~G~~~~~l~~~~p-~~~~~~~D~-p~~~~~a~~-------~~rv~~~~~d~~~~---~------p~~   82 (90)
                      ..++++||++|+++|..++.+++..| +.+++.+|. |+..+.|++       .++++++.||..+.   +      ..|
T Consensus       116 ~~~ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~~aGl~~~I~li~GdA~e~L~~l~~~~~~~~F  195 (278)
T PLN02476        116 ILGAERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYELAGVSHKVNVKHGLAAESLKSMIQNGEGSSY  195 (278)
T ss_pred             hcCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcccCCCC
Confidence            34678999999999999999999875 678999999 888888875       36899999998762   2      238


Q ss_pred             cEEEe
Q 034578           83 DAVFM   87 (90)
Q Consensus        83 D~i~l   87 (90)
                      |+|++
T Consensus       196 D~VFI  200 (278)
T PLN02476        196 DFAFV  200 (278)
T ss_pred             CEEEE
Confidence            99886

>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]

Probab=98.46  E-value=2.4e-06  Score=57.48  Aligned_cols=70  Identities=10%  Similarity=0.296  Sum_probs=54.6

Q ss_pred             hhHHHHHhhcccCCCCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeeh-HHHHHhCCC----CCCeeEEEecCCC-CCC
Q 034578            7 ITMKAFVSHYKVDGFNNIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDL-QHVIATAPT----HEGVSHVGGDMFD-AIP   80 (90)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~----~~rv~~~~~d~~~-~~p   80 (90)
                      .+.+.+++..+   ..+..+|++||+|.|.++..|+++...  ++++++ +.+++.-++    .++++++.+|+++ +++
T Consensus        17 ~v~~kIv~~a~---~~~~d~VlEIGpG~GaLT~~Ll~~~~~--v~aiEiD~~l~~~L~~~~~~~~n~~vi~~DaLk~d~~   91 (259)
T COG0030          17 NVIDKIVEAAN---ISPGDNVLEIGPGLGALTEPLLERAAR--VTAIEIDRRLAEVLKERFAPYDNLTVINGDALKFDFP   91 (259)
T ss_pred             HHHHHHHHhcC---CCCCCeEEEECCCCCHHHHHHHhhcCe--EEEEEeCHHHHHHHHHhcccccceEEEeCchhcCcch
Confidence            45677888777   555789999999999999999999765  566665 666555443    5889999999998 666


Q ss_pred             c
Q 034578           81 N   81 (90)
Q Consensus        81 ~   81 (90)
                      .
T Consensus        92 ~   92 (259)
T COG0030          92 S   92 (259)
T ss_pred             h
Confidence            3

>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes

Probab=98.46  E-value=4.7e-07  Score=59.49  Aligned_cols=64  Identities=17%  Similarity=0.233  Sum_probs=50.8

Q ss_pred             CCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeeh-HHHHHhCCC------------------CCCeeEEEecCCC-CCC
Q 034578           21 FNNIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDL-QHVIATAPT------------------HEGVSHVGGDMFD-AIP   80 (90)
Q Consensus        21 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~------------------~~rv~~~~~d~~~-~~p   80 (90)
                      .....++|+.|||.|.-+..|+++  +.+++++|+ |.+++.+.+                  .++++++.+|||+ +..
T Consensus        35 ~~~~~rvLvPgCG~g~D~~~La~~--G~~VvGvDls~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gDfF~l~~~  112 (218)
T PF05724_consen   35 LKPGGRVLVPGCGKGYDMLWLAEQ--GHDVVGVDLSPTAIEQAFEENNLEPTVTSVGGFKRYQAGRITIYCGDFFELPPE  112 (218)
T ss_dssp             TSTSEEEEETTTTTSCHHHHHHHT--TEEEEEEES-HHHHHHHHHHCTTEEECTTCTTEEEETTSSEEEEES-TTTGGGS
T ss_pred             CCCCCeEEEeCCCChHHHHHHHHC--CCeEEEEecCHHHHHHHHHHhccCCCcccccceeeecCCceEEEEcccccCChh
Confidence            445679999999999999999997  578999999 999987611                  2578999999999 221


Q ss_pred             ---cccEEE
Q 034578           81 ---NADAVF   86 (90)
Q Consensus        81 ---~~D~i~   86 (90)
                         .+|+|+
T Consensus       113 ~~g~fD~iy  121 (218)
T PF05724_consen  113 DVGKFDLIY  121 (218)
T ss_dssp             CHHSEEEEE
T ss_pred             hcCCceEEE
Confidence               289886

Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.

>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []

Probab=98.45  E-value=1.4e-06  Score=58.32  Aligned_cols=76  Identities=14%  Similarity=0.312  Sum_probs=56.3

Q ss_pred             HHHHHhhcccCCCCCCCeEEEecCCchHHHHHHHHH-CCCCeEEEeeh-HHHHHhCCC-------CCCeeEEEecCCC-C
Q 034578            9 MKAFVSHYKVDGFNNIRSMVDVGGGTGTVLAEIVKS-YPHIKGINFDL-QHVIATAPT-------HEGVSHVGGDMFD-A   78 (90)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~-~p~~~~~~~D~-p~~~~~a~~-------~~rv~~~~~d~~~-~   78 (90)
                      +..|+..++   ..+..+|++.|.|+|.++..|++. .|..++.-+|. ++-.+.|++       .+++++...|+.+ .
T Consensus        29 ~~~I~~~l~---i~pG~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~~~gl~~~v~~~~~Dv~~~g  105 (247)
T PF08704_consen   29 ISYILMRLD---IRPGSRVLEAGTGSGSLTHALARAVGPTGHVYTYEFREDRAEKARKNFERHGLDDNVTVHHRDVCEEG  105 (247)
T ss_dssp             HHHHHHHTT-----TT-EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHTTCCTTEEEEES-GGCG-
T ss_pred             HHHHHHHcC---CCCCCEEEEecCCcHHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHHHHcCCCCCceeEecceeccc
Confidence            345666666   778899999999999999999987 69999999999 888888875       3689999999965 3


Q ss_pred             C----C-cccEEEe
Q 034578           79 I----P-NADAVFM   87 (90)
Q Consensus        79 ~----p-~~D~i~l   87 (90)
                      +    . .+|.|+|
T Consensus       106 ~~~~~~~~~DavfL  119 (247)
T PF08704_consen  106 FDEELESDFDAVFL  119 (247)
T ss_dssp             -STT-TTSEEEEEE
T ss_pred             ccccccCcccEEEE
Confidence            3    2 2899987

; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.

>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases

Probab=98.44  E-value=1.3e-07  Score=61.55  Aligned_cols=67  Identities=16%  Similarity=0.291  Sum_probs=54.3

Q ss_pred             CCCCeEEEecCCchHHHHHHHHHCC-CCeEEEeeh-HHHHHhCCC-------CCCeeEEEecCCCC---C------Cccc
Q 034578           22 NNIRSMVDVGGGTGTVLAEIVKSYP-HIKGINFDL-QHVIATAPT-------HEGVSHVGGDMFDA---I------PNAD   83 (90)
Q Consensus        22 ~~~~~vlDvG~G~G~~~~~l~~~~p-~~~~~~~D~-p~~~~~a~~-------~~rv~~~~~d~~~~---~------p~~D   83 (90)
                      .++++||+||+++|+-+..+++..| +.+++.+|. |+..+.|++       .+|++++.||..+.   +      ..||
T Consensus        44 ~~~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~~~~~~ag~~~~I~~~~gda~~~l~~l~~~~~~~~fD  123 (205)
T PF01596_consen   44 TRPKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEIARENFRKAGLDDRIEVIEGDALEVLPELANDGEEGQFD  123 (205)
T ss_dssp             HT-SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHHHHHHHTTGGGGEEEEES-HHHHHHHHHHTTTTTSEE
T ss_pred             cCCceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHHHHHHHHhcCCCCcEEEEEeccHhhHHHHHhccCCCcee
Confidence            4578999999999999999999987 689999999 888888765       37999999998752   1      2389


Q ss_pred             EEEee
Q 034578           84 AVFMK   88 (90)
Q Consensus        84 ~i~l~   88 (90)
                      +|++-
T Consensus       124 ~VFiD  128 (205)
T PF01596_consen  124 FVFID  128 (205)
T ss_dssp             EEEEE
T ss_pred             EEEEc
Confidence            99873

The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....

>KOG2899 consensus Predicted methyltransferase [General function prediction only]

Probab=98.44  E-value=6.6e-07  Score=59.78  Aligned_cols=44  Identities=18%  Similarity=0.324  Sum_probs=39.5

Q ss_pred             CCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeeh-HHHHHhCCC
Q 034578           21 FNNIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDL-QHVIATAPT   64 (90)
Q Consensus        21 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~   64 (90)
                      +..+..+|||||-+|.++..+++.|-...++++|+ |..++.|++
T Consensus        56 ~f~~~~~LDIGCNsG~lt~~iak~F~~r~iLGvDID~~LI~~Ark  100 (288)
T KOG2899|consen   56 WFEPKQALDIGCNSGFLTLSIAKDFGPRRILGVDIDPVLIQRARK  100 (288)
T ss_pred             ccCcceeEeccCCcchhHHHHHHhhccceeeEeeccHHHHHHHHH
Confidence            44567899999999999999999998888999999 998988875

>PRK00536 speE spermidine synthase; Provisional

Probab=98.43  E-value=1.5e-06  Score=58.64  Aligned_cols=62  Identities=10%  Similarity=0.137  Sum_probs=50.2

Q ss_pred             CCCeEEEecCCchHHHHHHHHHCCCCeEEEeeh-HHHHHhCCC----------CCCeeEEEecCCCCC-CcccEEEe
Q 034578           23 NIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDL-QHVIATAPT----------HEGVSHVGGDMFDAI-PNADAVFM   87 (90)
Q Consensus        23 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~----------~~rv~~~~~d~~~~~-p~~D~i~l   87 (90)
                      .+++||=+|||.|..++++++. |. +++.+|+ +.+++.+++          ++|++++.. +.+.- ..||+|+.
T Consensus        72 ~pk~VLIiGGGDGg~~REvLkh-~~-~v~mVeID~~Vv~~~k~~lP~~~~~~~DpRv~l~~~-~~~~~~~~fDVIIv  145 (262)
T PRK00536         72 ELKEVLIVDGFDLELAHQLFKY-DT-HVDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQ-LLDLDIKKYDLIIC  145 (262)
T ss_pred             CCCeEEEEcCCchHHHHHHHCc-CC-eeEEEECCHHHHHHHHHHCHHHHHhhcCCCEEEeeh-hhhccCCcCCEEEE
Confidence            5789999999999999999996 55 9999999 999998876          488998862 32222 34999986

>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []

Probab=98.42  E-value=8.1e-07  Score=63.80  Aligned_cols=64  Identities=20%  Similarity=0.353  Sum_probs=47.7

Q ss_pred             CCeEEEecCCchHHHHHHHHHC----CCCeEEEeeh-HHHHHhCC----C---CCCeeEEEecCCC-CCCc-ccEEEe
Q 034578           24 IRSMVDVGGGTGTVLAEIVKSY----PHIKGINFDL-QHVIATAP----T---HEGVSHVGGDMFD-AIPN-ADAVFM   87 (90)
Q Consensus        24 ~~~vlDvG~G~G~~~~~l~~~~----p~~~~~~~D~-p~~~~~a~----~---~~rv~~~~~d~~~-~~p~-~D~i~l   87 (90)
                      ...|+|||||+|-++...+++.    -..++.+++. |.++...+    +   .++|+++.+|+.+ .+|+ +|+|+-
T Consensus       187 ~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~~~l~~~v~~n~w~~~V~vi~~d~r~v~lpekvDIIVS  264 (448)
T PF05185_consen  187 DKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAVVTLQKRVNANGWGDKVTVIHGDMREVELPEKVDIIVS  264 (448)
T ss_dssp             T-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHHHHHHHHHHHTTTTTTEEEEES-TTTSCHSS-EEEEEE
T ss_pred             ceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHHHHHHHHHHhcCCCCeEEEEeCcccCCCCCCceeEEEE
Confidence            4679999999999988777654    4678999998 76554321    1   4899999999988 6675 999974

These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....

>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2

Probab=98.35  E-value=1.1e-06  Score=58.59  Aligned_cols=65  Identities=22%  Similarity=0.292  Sum_probs=53.2

Q ss_pred             CCCeEEEecCCchHHHHHHHHHCCCCeEEEeeh-HHHHHhCCC----------CCCeeEEEecCCC---C-CC-cccEEE
Q 034578           23 NIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDL-QHVIATAPT----------HEGVSHVGGDMFD---A-IP-NADAVF   86 (90)
Q Consensus        23 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~----------~~rv~~~~~d~~~---~-~p-~~D~i~   86 (90)
                      .+++||=||+|.|..+.++++..+..+++.+|+ |.+++.+++          .+|++++.+|...   . .. .||+|+
T Consensus        76 ~p~~VLiiGgG~G~~~~ell~~~~~~~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i~~~Dg~~~l~~~~~~~yDvIi  155 (246)
T PF01564_consen   76 NPKRVLIIGGGDGGTARELLKHPPVESITVVEIDPEVVELARKYFPEFSEGLDDPRVRIIIGDGRKFLKETQEEKYDVII  155 (246)
T ss_dssp             ST-EEEEEESTTSHHHHHHTTSTT-SEEEEEES-HHHHHHHHHHTHHHHTTGGSTTEEEEESTHHHHHHTSSST-EEEEE
T ss_pred             CcCceEEEcCCChhhhhhhhhcCCcceEEEEecChHHHHHHHHhchhhccccCCCceEEEEhhhHHHHHhccCCcccEEE
Confidence            578999999999999999998776789999999 999998875          3799999999765   2 33 499998


Q ss_pred             e
Q 034578           87 M   87 (90)
Q Consensus        87 l   87 (90)
                      +
T Consensus       156 ~  156 (246)
T PF01564_consen  156 V  156 (246)
T ss_dssp             E
T ss_pred             E
Confidence            6

5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....

>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases

Probab=98.32  E-value=2.5e-06  Score=54.09  Aligned_cols=69  Identities=19%  Similarity=0.197  Sum_probs=44.6

Q ss_pred             CCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeehHHHHHhCCC---------CCCeeEEEecCCCC-----C-C-cccE
Q 034578           21 FNNIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDLQHVIATAPT---------HEGVSHVGGDMFDA-----I-P-NADA   84 (90)
Q Consensus        21 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~p~~~~~a~~---------~~rv~~~~~d~~~~-----~-p-~~D~   84 (90)
                      ..+..+||++|||+|..++.+++..+..+++.-|.+++++..+.         ..++++...||-++     + + .+|+
T Consensus        43 ~~~~~~VLELGaG~Gl~gi~~a~~~~~~~Vv~TD~~~~l~~l~~Ni~~N~~~~~~~v~v~~L~Wg~~~~~~~~~~~~~D~  122 (173)
T PF10294_consen   43 LFRGKRVLELGAGTGLPGIAAAKLFGAARVVLTDYNEVLELLRRNIELNGSLLDGRVSVRPLDWGDELDSDLLEPHSFDV  122 (173)
T ss_dssp             GTTTSEEEETT-TTSHHHHHHHHT-T-SEEEEEE-S-HHHHHHHHHHTT--------EEEE--TTS-HHHHHHS-SSBSE
T ss_pred             hcCCceEEEECCccchhHHHHHhccCCceEEEeccchhhHHHHHHHHhccccccccccCcEEEecCcccccccccccCCE
Confidence            34568999999999999999999878889999998557665443         26788888888662     2 2 3899


Q ss_pred             EEeec
Q 034578           85 VFMKV   89 (90)
Q Consensus        85 i~l~~   89 (90)
                      |+.+-
T Consensus       123 IlasD  127 (173)
T PF10294_consen  123 ILASD  127 (173)
T ss_dssp             EEEES
T ss_pred             EEEec
Confidence            88763

They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.

>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]

Probab=98.31  E-value=3.3e-07  Score=57.83  Aligned_cols=62  Identities=19%  Similarity=0.443  Sum_probs=46.8

Q ss_pred             CeEEEecCCchHHHHHHHHHCCCCeEEEeeh-HHHHHhCCC-------CCCeeEEEecCCCC---CC--c-ccEEEee
Q 034578           25 RSMVDVGGGTGTVLAEIVKSYPHIKGINFDL-QHVIATAPT-------HEGVSHVGGDMFDA---IP--N-ADAVFMK   88 (90)
Q Consensus        25 ~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~-------~~rv~~~~~d~~~~---~p--~-~D~i~l~   88 (90)
                      ..|+|+.||.|.-++.+++.++  +++++|+ |.-++.++.       .+|+.|+.+|+++.   +.  . +|+|+++
T Consensus         1 ~~vlD~fcG~GGNtIqFA~~~~--~Viaidid~~~~~~a~hNa~vYGv~~~I~~i~gD~~~~~~~~~~~~~~D~vFlS   76 (163)
T PF09445_consen    1 TTVLDAFCGVGGNTIQFARTFD--RVIAIDIDPERLECAKHNAEVYGVADNIDFICGDFFELLKRLKSNKIFDVVFLS   76 (163)
T ss_dssp             SEEEETT-TTSHHHHHHHHTT---EEEEEES-HHHHHHHHHHHHHTT-GGGEEEEES-HHHHGGGB------SEEEE-
T ss_pred             CEEEEeccCcCHHHHHHHHhCC--eEEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCCHHHHHhhccccccccEEEEC
Confidence            3699999999999999999975  4888898 888887765       36899999999982   22  2 6999986

Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.

>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional

Probab=98.31  E-value=9.4e-07  Score=62.31  Aligned_cols=65  Identities=14%  Similarity=0.021  Sum_probs=52.4

Q ss_pred             CCeEEEecCCchHHHHHHHHHCCCCeEEEeeh-HHHHHhCCCC------CCeeEEEecCCCCC---CcccEEEee
Q 034578           24 IRSMVDVGGGTGTVLAEIVKSYPHIKGINFDL-QHVIATAPTH------EGVSHVGGDMFDAI---PNADAVFMK   88 (90)
Q Consensus        24 ~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~------~rv~~~~~d~~~~~---p~~D~i~l~   88 (90)
                      ..++||++||+|.+++.++++.+..+++++|+ |.+++.++++      +++++..+|..+.+   ..+|+|++.
T Consensus        58 ~~~vLDl~aGsG~~~l~~a~~~~~~~V~a~Din~~Av~~a~~N~~~N~~~~~~v~~~Da~~~l~~~~~fD~V~lD  132 (382)
T PRK04338         58 RESVLDALSASGIRGIRYALETGVEKVTLNDINPDAVELIKKNLELNGLENEKVFNKDANALLHEERKFDVVDID  132 (382)
T ss_pred             CCEEEECCCcccHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCceEEEhhhHHHHHhhcCCCCEEEEC
Confidence            35899999999999999999887678999999 9999988762      45678888875522   238998863

>TIGR01444 fkbM_fam methyltransferase, FkbM family

Probab=98.30  E-value=3.2e-06  Score=51.24  Aligned_cols=52  Identities=15%  Similarity=0.183  Sum_probs=42.7

Q ss_pred             eEEEecCCchHHHHHHHHHCCCCeEEEeeh-HHHHHhCCCC------CCeeEEEecCCC
Q 034578           26 SMVDVGGGTGTVLAEIVKSYPHIKGINFDL-QHVIATAPTH------EGVSHVGGDMFD   77 (90)
Q Consensus        26 ~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~------~rv~~~~~d~~~   77 (90)
                      +++|+|||.|.++..+++.+|..+++++|. |.+.+.++++      ++++++...+.+
T Consensus         1 ~vlDiGa~~G~~~~~~~~~~~~~~v~~~E~~~~~~~~l~~~~~~n~~~~v~~~~~al~~   59 (143)
T TIGR01444         1 VVIDVGANIGDTSLYFARKGAEGRVIAFEPLPDAYEILEENVKLNNLPNVVLLNAAVGD   59 (143)
T ss_pred             CEEEccCCccHHHHHHHHhCCCCEEEEEecCHHHHHHHHHHHHHcCCCcEEEEEeeeeC
Confidence            489999999999999999999999999998 8887766541      457777766654

Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.

>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional

Probab=98.30  E-value=4.4e-06  Score=62.83  Aligned_cols=84  Identities=20%  Similarity=0.107  Sum_probs=63.8

Q ss_pred             cchhhhHHHHHhhcccCCCCCCCeEEEecCCchHHHHHHHHHC-------------------------------------
Q 034578            3 CTTKITMKAFVSHYKVDGFNNIRSMVDVGGGTGTVLAEIVKSY-------------------------------------   45 (90)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~-------------------------------------   45 (90)
                      .+.+.++..++..-.|  ..+...++|-.||+|.++++.+...                                     
T Consensus       172 pl~etlAaa~l~~a~w--~~~~~~l~DP~CGSGTilIEAa~~~~~~~pg~~r~~f~f~~~~~~~~~~w~~~~~~a~~~~~  249 (702)
T PRK11783        172 PLKENLAAAILLRSGW--PQEGTPLLDPMCGSGTLLIEAAMMAADIAPGLHRERWGFSGWLGHDEALWQELLEEAQERAR  249 (702)
T ss_pred             CCcHHHHHHHHHHcCC--CCCCCeEEccCCCccHHHHHHHHHHhcCCCCccccccccccCCCCCHHHHHHHHHHHHHHHh
Confidence            4556778888877664  2556899999999999999987631                                     


Q ss_pred             -----CCCeEEEeeh-HHHHHhCCCC-------CCeeEEEecCCC-CCC----cccEEEee
Q 034578           46 -----PHIKGINFDL-QHVIATAPTH-------EGVSHVGGDMFD-AIP----NADAVFMK   88 (90)
Q Consensus        46 -----p~~~~~~~D~-p~~~~~a~~~-------~rv~~~~~d~~~-~~p----~~D~i~l~   88 (90)
                           +..+++++|+ |.+++.|+++       +++++..+|+.+ +.+    .+|+|+.+
T Consensus       250 ~~~~~~~~~i~G~Did~~av~~A~~N~~~~g~~~~i~~~~~D~~~~~~~~~~~~~d~IvtN  310 (702)
T PRK11783        250 AGLAELPSKFYGSDIDPRVIQAARKNARRAGVAELITFEVKDVADLKNPLPKGPTGLVISN  310 (702)
T ss_pred             hcccccCceEEEEECCHHHHHHHHHHHHHcCCCcceEEEeCChhhcccccccCCCCEEEEC
Confidence                 1246899999 9999988762       578999999987 322    28988765

>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=98.26  E-value=1.8e-06  Score=55.96  Aligned_cols=68  Identities=15%  Similarity=0.226  Sum_probs=45.4

Q ss_pred             CCCeEEEecCCchH----HHHHHHHH----CC-CCeEEEeeh-HHHHHhCCC----------------------------
Q 034578           23 NIRSMVDVGGGTGT----VLAEIVKS----YP-HIKGINFDL-QHVIATAPT----------------------------   64 (90)
Q Consensus        23 ~~~~vlDvG~G~G~----~~~~l~~~----~p-~~~~~~~D~-p~~~~~a~~----------------------------   64 (90)
                      +.-+|+..||+||.    ++..+.+.    .+ ..++++.|+ +.+++.|++                            
T Consensus        31 ~~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~Ar~G~Y~~~~~~~~~~~~~~ryf~~~~~~~~  110 (196)
T PF01739_consen   31 RPLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKARAGIYPERSLRGLPPAYLRRYFTERDGGGY  110 (196)
T ss_dssp             S-EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHHHHTEEEGGGGTTS-HHHHHHHEEEE-CCCT
T ss_pred             CCeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHHHhCCCCHHHHhhhHHHHHHHhccccCCCce
Confidence            45789999999998    34444441    12 478999999 999998864                            


Q ss_pred             ------CCCeeEEEecCCC-CCC--cccEEEeecC
Q 034578           65 ------HEGVSHVGGDMFD-AIP--NADAVFMKVA   90 (90)
Q Consensus        65 ------~~rv~~~~~d~~~-~~p--~~D~i~l~~v   90 (90)
                            ..+|+|..+|+.+ +.+  .+|+|+++||
T Consensus       111 ~v~~~lr~~V~F~~~NL~~~~~~~~~fD~I~CRNV  145 (196)
T PF01739_consen  111 RVKPELRKMVRFRRHNLLDPDPPFGRFDLIFCRNV  145 (196)
T ss_dssp             TE-HHHHTTEEEEE--TT-S------EEEEEE-SS
T ss_pred             eEChHHcCceEEEecccCCCCcccCCccEEEecCE
Confidence                  1679999999999 322  3999999986

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.

>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=98.24  E-value=4e-06  Score=57.59  Aligned_cols=64  Identities=16%  Similarity=0.153  Sum_probs=41.2

Q ss_pred             CCCeEEEecCCchHHHHHHHHHCCCCeEEEeeh-HHHHHhCC------C-CCCeeEEEecCCCCCC---cccEEEee
Q 034578           23 NIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDL-QHVIATAP------T-HEGVSHVGGDMFDAIP---NADAVFMK   88 (90)
Q Consensus        23 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~------~-~~rv~~~~~d~~~~~p---~~D~i~l~   88 (90)
                      ..++|||||||+|.++-+++++.| ..++++|- +.-.-+.+      . ..++.+.+-.+ +.+|   .||+|++-
T Consensus       115 ~gk~VLDIGC~nGY~~frM~~~GA-~~ViGiDP~~lf~~QF~~i~~~lg~~~~~~~lplgv-E~Lp~~~~FDtVF~M  189 (315)
T PF08003_consen  115 KGKRVLDIGCNNGYYSFRMLGRGA-KSVIGIDPSPLFYLQFEAIKHFLGQDPPVFELPLGV-EDLPNLGAFDTVFSM  189 (315)
T ss_pred             CCCEEEEecCCCcHHHHHHhhcCC-CEEEEECCChHHHHHHHHHHHHhCCCccEEEcCcch-hhccccCCcCEEEEe
Confidence            457999999999999999999865 35899995 33222221      1 23344443223 3333   39999874

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification

>KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis]

Probab=98.23  E-value=2.9e-06  Score=52.97  Aligned_cols=63  Identities=17%  Similarity=0.286  Sum_probs=47.9

Q ss_pred             CCeEEEecCCchHHHHHHHHHCCC-CeEEEeeh-HHHHHhCCCC-----CCeeEEEecCCCCCC--c-ccEEEee
Q 034578           24 IRSMVDVGGGTGTVLAEIVKSYPH-IKGINFDL-QHVIATAPTH-----EGVSHVGGDMFDAIP--N-ADAVFMK   88 (90)
Q Consensus        24 ~~~vlDvG~G~G~~~~~l~~~~p~-~~~~~~D~-p~~~~~a~~~-----~rv~~~~~d~~~~~p--~-~D~i~l~   88 (90)
                      ...+.|+|||.|.++.+  -.+|. -.++++|+ |++++.+.++     -++.+++.|+.+..+  . +|..+++
T Consensus        49 gkkl~DLgcgcGmLs~a--~sm~~~e~vlGfDIdpeALEIf~rNaeEfEvqidlLqcdildle~~~g~fDtaviN  121 (185)
T KOG3420|consen   49 GKKLKDLGCGCGMLSIA--FSMPKNESVLGFDIDPEALEIFTRNAEEFEVQIDLLQCDILDLELKGGIFDTAVIN  121 (185)
T ss_pred             CcchhhhcCchhhhHHH--hhcCCCceEEeeecCHHHHHHHhhchHHhhhhhheeeeeccchhccCCeEeeEEec
Confidence            46899999999999944  34444 45899999 9999988764     457888888887433  2 7887765

>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]

Probab=98.23  E-value=6.5e-07  Score=59.52  Aligned_cols=42  Identities=24%  Similarity=0.346  Sum_probs=36.0

Q ss_pred             CCCCeEEEecCCchHHHHHHHHHCCCCeEEEeeh-HHHHHhCCCC
Q 034578           22 NNIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDL-QHVIATAPTH   65 (90)
Q Consensus        22 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~   65 (90)
                      ....++||+|||||..+..+....  .+.+++|+ ..|++.|.++
T Consensus       124 g~F~~~lDLGCGTGL~G~~lR~~a--~~ltGvDiS~nMl~kA~eK  166 (287)
T COG4976         124 GPFRRMLDLGCGTGLTGEALRDMA--DRLTGVDISENMLAKAHEK  166 (287)
T ss_pred             CccceeeecccCcCcccHhHHHHH--hhccCCchhHHHHHHHHhc
Confidence            347899999999999999998874  44689999 9999999874

>PF13679 Methyltransf_32: Methyltransferase domain

Probab=98.21  E-value=2.8e-06  Score=52.09  Aligned_cols=55  Identities=24%  Similarity=0.517  Sum_probs=42.9

Q ss_pred             CCCCeEEEecCCchHHHHHHHH-----HCCCCeEEEeeh-HHHHHhCCC---------CCCeeEEEecCCC
Q 034578           22 NNIRSMVDVGGGTGTVLAEIVK-----SYPHIKGINFDL-QHVIATAPT---------HEGVSHVGGDMFD   77 (90)
Q Consensus        22 ~~~~~vlDvG~G~G~~~~~l~~-----~~p~~~~~~~D~-p~~~~~a~~---------~~rv~~~~~d~~~   77 (90)
                      .+..+|+|+|||.|+++..++.     . |+.+++++|. +..++.+++         ..+.++..+++.+
T Consensus        24 ~~~~~vvD~GsG~GyLs~~La~~l~~~~-~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~   93 (141)
T PF13679_consen   24 KRCITVVDLGSGKGYLSRALAHLLCNSS-PNLRVLGIDCNESLVESAQKRAQKLGSDLEKRLSFIQGDIAD   93 (141)
T ss_pred             CCCCEEEEeCCChhHHHHHHHHHHHhcC-CCCeEEEEECCcHHHHHHHHHHHHhcchhhccchhhccchhh
Confidence            5678999999999999999999     4 8899999998 776665543         2456666666543

>COG4122 Predicted O-methyltransferase [General function prediction only]

Probab=98.19  E-value=7.4e-06  Score=53.94  Aligned_cols=67  Identities=15%  Similarity=0.272  Sum_probs=56.6

Q ss_pred             CCCCCeEEEecCCchHHHHHHHHHCC-CCeEEEeeh-HHHHHhCCC-------CCCeeEEE-ecCCC---C-C-CcccEE
Q 034578           21 FNNIRSMVDVGGGTGTVLAEIVKSYP-HIKGINFDL-QHVIATAPT-------HEGVSHVG-GDMFD---A-I-PNADAV   85 (90)
Q Consensus        21 ~~~~~~vlDvG~G~G~~~~~l~~~~p-~~~~~~~D~-p~~~~~a~~-------~~rv~~~~-~d~~~---~-~-p~~D~i   85 (90)
                      ..+++++|+||++.|.-++.++...| +.+.+.+|+ |+..+.|++       .++++++. +|..+   . . +.||+|
T Consensus        57 ~~~~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~ag~~~~i~~~~~gdal~~l~~~~~~~fDli  136 (219)
T COG4122          57 LSGPKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENLAEAGVDDRIELLLGGDALDVLSRLLDGSFDLV  136 (219)
T ss_pred             hcCCceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHHcCCcceEEEEecCcHHHHHHhccCCCccEE
Confidence            45789999999999999999999999 889999999 999999886       36788888 57766   2 2 349999


Q ss_pred             Ee
Q 034578           86 FM   87 (90)
Q Consensus        86 ~l   87 (90)
                      ++
T Consensus       137 FI  138 (219)
T COG4122         137 FI  138 (219)
T ss_pred             EE
Confidence            86

>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]

Probab=98.18  E-value=3.9e-06  Score=55.55  Aligned_cols=53  Identities=21%  Similarity=0.359  Sum_probs=43.7

Q ss_pred             CeEEEecCCchHHHHHHHHHCCCCeEEEeeh-HHHHHhCCC-----C-CCeeEEEecCCC
Q 034578           25 RSMVDVGGGTGTVLAEIVKSYPHIKGINFDL-QHVIATAPT-----H-EGVSHVGGDMFD   77 (90)
Q Consensus        25 ~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~-----~-~rv~~~~~d~~~   77 (90)
                      ..+|+||||.|.+...+++++|+..++++|+ ...+..+.+     . .++.++.+|..+
T Consensus        50 pi~lEIGfG~G~~l~~~A~~nP~~nfiGiEi~~~~v~~~l~k~~~~~l~Nlri~~~DA~~  109 (227)
T COG0220          50 PIVLEIGFGMGEFLVEMAKKNPEKNFLGIEIRVPGVAKALKKIKELGLKNLRLLCGDAVE  109 (227)
T ss_pred             cEEEEECCCCCHHHHHHHHHCCCCCEEEEEEehHHHHHHHHHHHHcCCCcEEEEcCCHHH
Confidence            4799999999999999999999999999998 555444422     2 389999988765

>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family

Probab=98.14  E-value=4.2e-06  Score=54.39  Aligned_cols=68  Identities=19%  Similarity=0.257  Sum_probs=51.0

Q ss_pred             CCCCeEEEecCCchHHHHHHHHHCCCCeEEEeeh-HHHHHhCCC-------CCCeeEEEecCCCCCC-c-ccEEEeec
Q 034578           22 NNIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDL-QHVIATAPT-------HEGVSHVGGDMFDAIP-N-ADAVFMKV   89 (90)
Q Consensus        22 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~-------~~rv~~~~~d~~~~~p-~-~D~i~l~~   89 (90)
                      .+..+|+|+-||-|.+++.+++..+..++++.|+ |++++..++       .+++..+.+|..+-++ . +|-|+|+.
T Consensus       100 ~~~e~VlD~faGIG~f~l~~ak~~~~~~V~A~d~Np~a~~~L~~Ni~lNkv~~~i~~~~~D~~~~~~~~~~drvim~l  177 (200)
T PF02475_consen  100 KPGEVVLDMFAGIGPFSLPIAKHGKAKRVYAVDLNPDAVEYLKENIRLNKVENRIEVINGDAREFLPEGKFDRVIMNL  177 (200)
T ss_dssp             -TT-EEEETT-TTTTTHHHHHHHT-SSEEEEEES-HHHHHHHHHHHHHTT-TTTEEEEES-GGG---TT-EEEEEE--
T ss_pred             CcceEEEEccCCccHHHHHHhhhcCccEEEEecCCHHHHHHHHHHHHHcCCCCeEEEEcCCHHHhcCccccCEEEECC
Confidence            3578999999999999999999888889999999 998887654       3789999999877433 3 89998864

Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.

>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional

Probab=98.12  E-value=1.7e-05  Score=55.36  Aligned_cols=64  Identities=19%  Similarity=0.181  Sum_probs=51.8

Q ss_pred             CCCCeEEEecCCchHHHHHHHHHCCCCeEEEeehHHHHHhCCCCCCeeEEEecCCCCCC--c-ccEEEe
Q 034578           22 NNIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDLQHVIATAPTHEGVSHVGGDMFDAIP--N-ADAVFM   87 (90)
Q Consensus        22 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~p~~~~~a~~~~rv~~~~~d~~~~~p--~-~D~i~l   87 (90)
                      .+..++||+||++|.++..++++  +.+++++|..++-......++|++..+|-+...|  . +|++++
T Consensus       210 ~~g~~vlDLGAsPGGWT~~L~~r--G~~V~AVD~g~l~~~L~~~~~V~h~~~d~fr~~p~~~~vDwvVc  276 (357)
T PRK11760        210 APGMRAVDLGAAPGGWTYQLVRR--GMFVTAVDNGPMAQSLMDTGQVEHLRADGFKFRPPRKNVDWLVC  276 (357)
T ss_pred             CCCCEEEEeCCCCcHHHHHHHHc--CCEEEEEechhcCHhhhCCCCEEEEeccCcccCCCCCCCCEEEE
Confidence            45679999999999999999998  5699999975555555668999999999988443  2 788765

>KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones]

Probab=98.11  E-value=8e-06  Score=53.58  Aligned_cols=78  Identities=17%  Similarity=0.149  Sum_probs=57.2

Q ss_pred             HHHHhhcccCCCCCCCeEEEecCCchHHHHHHHHHC--CCCeEEEeeh-HHHHHhCCC----------------CCCeeE
Q 034578           10 KAFVSHYKVDGFNNIRSMVDVGGGTGTVLAEIVKSY--PHIKGINFDL-QHVIATAPT----------------HEGVSH   70 (90)
Q Consensus        10 ~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~--p~~~~~~~D~-p~~~~~a~~----------------~~rv~~   70 (90)
                      ..+++.++. .+.+..+.||+|+|||.++..+++-.  +.....++|. |+.++.+++                ..++++
T Consensus        70 a~~le~L~~-~L~pG~s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh~~eLVe~Sk~nl~k~i~~~e~~~~~~~~~l~i  148 (237)
T KOG1661|consen   70 ATALEYLDD-HLQPGASFLDVGSGSGYLTACFARMVGATGGNVHGIEHIPELVEYSKKNLDKDITTSESSSKLKRGELSI  148 (237)
T ss_pred             HHHHHHHHH-hhccCcceeecCCCccHHHHHHHHHhcCCCccccchhhhHHHHHHHHHHHHhhccCchhhhhhccCceEE
Confidence            344555542 24567899999999999999888553  3444589998 999988765                267899


Q ss_pred             EEecCCCCCC---cccEEEee
Q 034578           71 VGGDMFDAIP---NADAVFMK   88 (90)
Q Consensus        71 ~~~d~~~~~p---~~D~i~l~   88 (90)
                      +.||-.+-.+   +||.|...
T Consensus       149 vvGDgr~g~~e~a~YDaIhvG  169 (237)
T KOG1661|consen  149 VVGDGRKGYAEQAPYDAIHVG  169 (237)
T ss_pred             EeCCccccCCccCCcceEEEc
Confidence            9999887333   38998764

>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms

Probab=98.10  E-value=1e-05  Score=54.70  Aligned_cols=68  Identities=21%  Similarity=0.299  Sum_probs=46.8

Q ss_pred             CCCeEEEecCCchHHHHHHHHHCCCC-eEEEeeh-HHHHHhCCC----CC--CeeEEEecCCC---CCCcccEEEeecC
Q 034578           23 NIRSMVDVGGGTGTVLAEIVKSYPHI-KGINFDL-QHVIATAPT----HE--GVSHVGGDMFD---AIPNADAVFMKVA   90 (90)
Q Consensus        23 ~~~~vlDvG~G~G~~~~~l~~~~p~~-~~~~~D~-p~~~~~a~~----~~--rv~~~~~d~~~---~~p~~D~i~l~~v   90 (90)
                      .+.+|||+|+|+|.-.-++...+|.. +++.+|. +.|.+.++.    ..  +......++..   +++..|+|+++|+
T Consensus        33 ~P~~vLD~GsGpGta~wAa~~~~~~~~~~~~vd~s~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~DLvi~s~~  111 (274)
T PF09243_consen   33 RPRSVLDFGSGPGTALWAAREVWPSLKEYTCVDRSPEMLELAKRLLRAGPNNRNAEWRRVLYRDFLPFPPDDLVIASYV  111 (274)
T ss_pred             CCceEEEecCChHHHHHHHHHHhcCceeeeeecCCHHHHHHHHHHHhcccccccchhhhhhhcccccCCCCcEEEEehh
Confidence            46799999999999998888888854 5889998 888887654    11  11111122221   3444799999874

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation

>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]

Probab=98.10  E-value=2.5e-05  Score=52.86  Aligned_cols=68  Identities=15%  Similarity=0.211  Sum_probs=55.5

Q ss_pred             CCCeEEEecCCchH----HHHHHHHHCC-----CCeEEEeeh-HHHHHhCCC----------------------------
Q 034578           23 NIRSMVDVGGGTGT----VLAEIVKSYP-----HIKGINFDL-QHVIATAPT----------------------------   64 (90)
Q Consensus        23 ~~~~vlDvG~G~G~----~~~~l~~~~p-----~~~~~~~D~-p~~~~~a~~----------------------------   64 (90)
                      +.-+|.-.||+||.    ++..+.+.+|     ..++++.|+ ..+++.|+.                            
T Consensus        96 ~~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L~~A~~G~Y~~~~~~~~~~~~~~~ryF~~~~~~~  175 (268)
T COG1352          96 RPIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVLEKARAGIYPSRELLRGLPPELLRRYFERGGDGS  175 (268)
T ss_pred             CceEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCHHHHHHHhcCCCChhHhhccCCHHHHhhhEeecCCCc
Confidence            46789999999997    6667777776     478999999 899998864                            


Q ss_pred             -------CCCeeEEEecCCC-C-CCc-ccEEEeecC
Q 034578           65 -------HEGVSHVGGDMFD-A-IPN-ADAVFMKVA   90 (90)
Q Consensus        65 -------~~rv~~~~~d~~~-~-~p~-~D~i~l~~v   90 (90)
                             ...|.|..+|.++ + .+. +|+|++++|
T Consensus       176 y~v~~~ir~~V~F~~~NLl~~~~~~~~fD~IfCRNV  211 (268)
T COG1352         176 YRVKEELRKMVRFRRHNLLDDSPFLGKFDLIFCRNV  211 (268)
T ss_pred             EEEChHHhcccEEeecCCCCCccccCCCCEEEEcce
Confidence                   1468999999998 3 444 999999986

>PLN02589 caffeoyl-CoA O-methyltransferase

Probab=98.07  E-value=1.1e-05  Score=53.94  Aligned_cols=66  Identities=15%  Similarity=0.194  Sum_probs=54.5

Q ss_pred             CCCCeEEEecCCchHHHHHHHHHC-CCCeEEEeeh-HHHHHhCCC-------CCCeeEEEecCCCC---C-------Ccc
Q 034578           22 NNIRSMVDVGGGTGTVLAEIVKSY-PHIKGINFDL-QHVIATAPT-------HEGVSHVGGDMFDA---I-------PNA   82 (90)
Q Consensus        22 ~~~~~vlDvG~G~G~~~~~l~~~~-p~~~~~~~D~-p~~~~~a~~-------~~rv~~~~~d~~~~---~-------p~~   82 (90)
                      .+++++|+||+++|.-++.+++.. |+.+++.+|. |+..+.|++       .++++++.||..+-   +       ..|
T Consensus        78 ~~ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~~~Ar~~~~~ag~~~~I~~~~G~a~e~L~~l~~~~~~~~~f  157 (247)
T PLN02589         78 INAKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPVLDQMIEDGKYHGTF  157 (247)
T ss_pred             hCCCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeccHHHHHHHHHhccccCCcc
Confidence            357899999999999999999886 4789999999 887777765       37899999998762   1       248


Q ss_pred             cEEEe
Q 034578           83 DAVFM   87 (90)
Q Consensus        83 D~i~l   87 (90)
                      |+|++
T Consensus       158 D~iFi  162 (247)
T PLN02589        158 DFIFV  162 (247)
T ss_pred             cEEEe
Confidence            99986

>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]

Probab=98.06  E-value=2.1e-05  Score=50.05  Aligned_cols=82  Identities=18%  Similarity=0.261  Sum_probs=65.0

Q ss_pred             chhhhHHHHHhhcccCCCCCCCeEEEecCCchHHHHHHHHHC-CCCeEEEeeh-HHHHHhCCC-CCCeeEEEecCCC-C-
Q 034578            4 TTKITMKAFVSHYKVDGFNNIRSMVDVGGGTGTVLAEIVKSY-PHIKGINFDL-QHVIATAPT-HEGVSHVGGDMFD-A-   78 (90)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~-p~~~~~~~D~-p~~~~~a~~-~~rv~~~~~d~~~-~-   78 (90)
                      .|..+++++++.++   +++...|+++|-|||.+..+++++. +.-..+.++. |+-+..-.+ .+.++++.||.+. . 
T Consensus        32 sSs~lA~~M~s~I~---pesglpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~dF~~~L~~~~p~~~ii~gda~~l~~  108 (194)
T COG3963          32 SSSILARKMASVID---PESGLPVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFVCHLNQLYPGVNIINGDAFDLRT  108 (194)
T ss_pred             CcHHHHHHHHhccC---cccCCeeEEEcCCccHhHHHHHhcCCCccceEEEEeCHHHHHHHHHhCCCccccccchhhHHH
Confidence            46678899999998   6778899999999999999999984 6777899998 876665544 5677899999886 2 


Q ss_pred             -C-----CcccEEEee
Q 034578           79 -I-----PNADAVFMK   88 (90)
Q Consensus        79 -~-----p~~D~i~l~   88 (90)
                       +     +.+|.++..
T Consensus       109 ~l~e~~gq~~D~viS~  124 (194)
T COG3963         109 TLGEHKGQFFDSVISG  124 (194)
T ss_pred             HHhhcCCCeeeeEEec
Confidence             2     228988753

>PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins

Probab=98.05  E-value=9.4e-06  Score=52.94  Aligned_cols=62  Identities=18%  Similarity=0.292  Sum_probs=48.9

Q ss_pred             EEEecCCchHHHHHHHHHCCCCeEEEeeh-HHHHHhCCC-------CCCeeEEEecCCCCCCc---ccEEEee
Q 034578           27 MVDVGGGTGTVLAEIVKSYPHIKGINFDL-QHVIATAPT-------HEGVSHVGGDMFDAIPN---ADAVFMK   88 (90)
Q Consensus        27 vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~-------~~rv~~~~~d~~~~~p~---~D~i~l~   88 (90)
                      |.||||-.|.++..|+++...-++++.|+ |..++.|++       .+++++..+|-++.++.   .|+|++.
T Consensus         1 vaDIGtDHgyLpi~L~~~~~~~~~ia~DI~~gpL~~A~~~i~~~~l~~~i~~rlgdGL~~l~~~e~~d~ivIA   73 (205)
T PF04816_consen    1 VADIGTDHGYLPIYLLKNGKAPKAIAVDINPGPLEKAKENIAKYGLEDRIEVRLGDGLEVLKPGEDVDTIVIA   73 (205)
T ss_dssp             EEEET-STTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTT-TTTEEEEE-SGGGG--GGG---EEEEE
T ss_pred             CceeccchhHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCcccEEEEECCcccccCCCCCCCEEEEe
Confidence            68999999999999999998889999999 888888765       47899999998886643   7788764

; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B.

>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]

Probab=98.03  E-value=1.5e-05  Score=56.31  Aligned_cols=65  Identities=32%  Similarity=0.492  Sum_probs=54.2

Q ss_pred             CCCCeEEEecCCchHHHHHHHHHCC-CCeEEEeeh-HHHHHhCCC-------------CCCeeEEEecCCCCCC---c-c
Q 034578           22 NNIRSMVDVGGGTGTVLAEIVKSYP-HIKGINFDL-QHVIATAPT-------------HEGVSHVGGDMFDAIP---N-A   82 (90)
Q Consensus        22 ~~~~~vlDvG~G~G~~~~~l~~~~p-~~~~~~~D~-p~~~~~a~~-------------~~rv~~~~~d~~~~~p---~-~   82 (90)
                      .+.+++|-+|||.|.-++++++ +| --+++.+|+ |.|++.++.             ++|++.+..|.++.+.   + |
T Consensus       288 ~~a~~vLvlGGGDGLAlRellk-yP~~~qI~lVdLDP~miela~~~~vlr~~N~~sf~dpRv~Vv~dDAf~wlr~a~~~f  366 (508)
T COG4262         288 RGARSVLVLGGGDGLALRELLK-YPQVEQITLVDLDPRMIELASHATVLRALNQGSFSDPRVTVVNDDAFQWLRTAADMF  366 (508)
T ss_pred             cccceEEEEcCCchHHHHHHHh-CCCcceEEEEecCHHHHHHhhhhhHhhhhccCCccCCeeEEEeccHHHHHHhhcccc
Confidence            4568999999999999999887 78 457999999 999999873             3899999999988542   2 8


Q ss_pred             cEEEe
Q 034578           83 DAVFM   87 (90)
Q Consensus        83 D~i~l   87 (90)
                      |.++.
T Consensus       367 D~vIV  371 (508)
T COG4262         367 DVVIV  371 (508)
T ss_pred             cEEEE
Confidence            88875

>COG4076 Predicted RNA methylase [General function prediction only]

Probab=98.01  E-value=1.3e-05  Score=52.14  Aligned_cols=61  Identities=23%  Similarity=0.277  Sum_probs=51.9

Q ss_pred             CeEEEecCCchHHHHHHHHHCCCCeEEEeeh-HHHHHhCCCC------CCeeEEEecCCC-CCCcccEEEe
Q 034578           25 RSMVDVGGGTGTVLAEIVKSYPHIKGINFDL-QHVIATAPTH------EGVSHVGGDMFD-AIPNADAVFM   87 (90)
Q Consensus        25 ~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~------~rv~~~~~d~~~-~~p~~D~i~l   87 (90)
                      ..+.|+|.|+|.++.-.++.  .-++++++. |...+.|.++      .+++.+.||..+ .+..+|+|++
T Consensus        34 d~~~DLGaGsGiLs~~Aa~~--A~rViAiE~dPk~a~~a~eN~~v~g~~n~evv~gDA~~y~fe~ADvvic  102 (252)
T COG4076          34 DTFADLGAGSGILSVVAAHA--AERVIAIEKDPKRARLAEENLHVPGDVNWEVVVGDARDYDFENADVVIC  102 (252)
T ss_pred             hceeeccCCcchHHHHHHhh--hceEEEEecCcHHHHHhhhcCCCCCCcceEEEecccccccccccceeHH
Confidence            68999999999999877776  567899999 9888888874      689999999988 6766999875

>TIGR00006 S-adenosyl-methyltransferase MraW

Probab=97.98  E-value=5.3e-05  Score=52.18  Aligned_cols=77  Identities=16%  Similarity=0.176  Sum_probs=62.4

Q ss_pred             hHHHHHhhcccCCCCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeeh-HHHHHhCCC-----CCCeeEEEecCCC--C-
Q 034578            8 TMKAFVSHYKVDGFNNIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDL-QHVIATAPT-----HEGVSHVGGDMFD--A-   78 (90)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~-----~~rv~~~~~d~~~--~-   78 (90)
                      +.+.+++.+.   ..+...++|.=+|.|..+..++++.|+.+++++|. |.+++.+++     .+|++++.++|.+  . 
T Consensus         8 ll~Evl~~L~---~~~ggiyVD~TlG~GGHS~~iL~~l~~g~vigiD~D~~Al~~ak~~L~~~~~R~~~i~~nF~~l~~~   84 (305)
T TIGR00006         8 LLDEVVEGLN---IKPDGIYIDCTLGFGGHSKAILEQLGTGRLIGIDRDPQAIAFAKERLSDFEGRVVLIHDNFANFFEH   84 (305)
T ss_pred             hHHHHHHhcC---cCCCCEEEEeCCCChHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHhhcCCcEEEEeCCHHHHHHH
Confidence            3466777776   45667999999999999999999988899999999 999988865     2589999999875  1 


Q ss_pred             C-----CcccEEEe
Q 034578           79 I-----PNADAVFM   87 (90)
Q Consensus        79 ~-----p~~D~i~l   87 (90)
                      +     ..+|.|++
T Consensus        85 l~~~~~~~vDgIl~   98 (305)
T TIGR00006        85 LDELLVTKIDGILV   98 (305)
T ss_pred             HHhcCCCcccEEEE
Confidence            2     23788876

Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.

>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed

Probab=97.96  E-value=1.9e-05  Score=57.53  Aligned_cols=66  Identities=15%  Similarity=0.241  Sum_probs=48.5

Q ss_pred             CCCeEEEecCCchHHHHHHHHHCCCCeEEEeeh-HHHHHhC-CC-----CCCeeEEEecCCC---CCCc--ccEEEee
Q 034578           23 NIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDL-QHVIATA-PT-----HEGVSHVGGDMFD---AIPN--ADAVFMK   88 (90)
Q Consensus        23 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a-~~-----~~rv~~~~~d~~~---~~p~--~D~i~l~   88 (90)
                      ....+||||||.|.+...+++++|+..++++|+ ...+..+ ++     -.++.++.+|+..   .+|.  .|-+++.
T Consensus       347 ~~p~~lEIG~G~G~~~~~~A~~~p~~~~iGiE~~~~~~~~~~~~~~~~~l~N~~~~~~~~~~~~~~~~~~sv~~i~i~  424 (506)
T PRK01544        347 KRKVFLEIGFGMGEHFINQAKMNPDALFIGVEVYLNGVANVLKLAGEQNITNFLLFPNNLDLILNDLPNNSLDGIYIL  424 (506)
T ss_pred             CCceEEEECCCchHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHhcCcccccEEEEE
Confidence            357899999999999999999999999999998 5433332 21     2577888777632   3443  5666654

>KOG3010 consensus Methyltransferase [General function prediction only]

Probab=97.96  E-value=9.2e-06  Score=54.20  Aligned_cols=42  Identities=29%  Similarity=0.398  Sum_probs=35.4

Q ss_pred             CCeEEEecCCchHHHHHHHHHCCCCeEEEeeh-HHHHHhCCCCCC
Q 034578           24 IRSMVDVGGGTGTVLAEIVKSYPHIKGINFDL-QHVIATAPTHEG   67 (90)
Q Consensus        24 ~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~~r   67 (90)
                      .+.++|||||+|.-++.++..+.+  +++.|. +.|++.+++..+
T Consensus        34 h~~a~DvG~G~Gqa~~~iae~~k~--VIatD~s~~mL~~a~k~~~   76 (261)
T KOG3010|consen   34 HRLAWDVGTGNGQAARGIAEHYKE--VIATDVSEAMLKVAKKHPP   76 (261)
T ss_pred             cceEEEeccCCCcchHHHHHhhhh--heeecCCHHHHHHhhcCCC
Confidence            458999999999888888887654  799999 999999988543

>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2

Probab=97.89  E-value=4.8e-05  Score=51.81  Aligned_cols=77  Identities=16%  Similarity=0.246  Sum_probs=53.1

Q ss_pred             HHHHHhhcccCCCCCCCeEEEecCCchHHHHHHHHH-------CCCCeEEEeeh-HHHHHhCCC--------CCCeeEEE
Q 034578            9 MKAFVSHYKVDGFNNIRSMVDVGGGTGTVLAEIVKS-------YPHIKGINFDL-QHVIATAPT--------HEGVSHVG   72 (90)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~-------~p~~~~~~~D~-p~~~~~a~~--------~~rv~~~~   72 (90)
                      ++-+++...   .....+|+|-.||+|.++.++.+.       .+..++.++|+ +.++..++.        .....+..
T Consensus        35 ~~l~~~~~~---~~~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~l~~~~~~~~~i~~  111 (311)
T PF02384_consen   35 VDLMVKLLN---PKKGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNLLLHGIDNSNINIIQ  111 (311)
T ss_dssp             HHHHHHHHT---T-TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHHHTTHHCBGCEEEE
T ss_pred             HHHHHhhhh---ccccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhhhhhccccccccccc
Confidence            333444444   445668999999999999998874       47889999999 888776653        23356888


Q ss_pred             ecCCC--CCC---cccEEEee
Q 034578           73 GDMFD--AIP---NADAVFMK   88 (90)
Q Consensus        73 ~d~~~--~~p---~~D~i~l~   88 (90)
                      +|.+.  ...   .+|+|+.+
T Consensus       112 ~d~l~~~~~~~~~~~D~ii~N  132 (311)
T PF02384_consen  112 GDSLENDKFIKNQKFDVIIGN  132 (311)
T ss_dssp             S-TTTSHSCTST--EEEEEEE
T ss_pred             cccccccccccccccccccCC
Confidence            99887  222   39999875

1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.

>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length

Probab=97.89  E-value=0.00011  Score=50.37  Aligned_cols=67  Identities=15%  Similarity=0.266  Sum_probs=54.2

Q ss_pred             CCCCeEEEecCCchHHHHHHHHHCCC--CeEEEeeh-HHHHHhCCC-------CCCeeEEEecCCCC-----C-CcccEE
Q 034578           22 NNIRSMVDVGGGTGTVLAEIVKSYPH--IKGINFDL-QHVIATAPT-------HEGVSHVGGDMFDA-----I-PNADAV   85 (90)
Q Consensus        22 ~~~~~vlDvG~G~G~~~~~l~~~~p~--~~~~~~D~-p~~~~~a~~-------~~rv~~~~~d~~~~-----~-p~~D~i   85 (90)
                      ..+-+||||.||.|.+....+..+|.  .++...|. |..++..++       .+-++|..+|.|+.     + |..+++
T Consensus       134 g~pvrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~~g~~li~~~gL~~i~~f~~~dAfd~~~l~~l~p~P~l~  213 (311)
T PF12147_consen  134 GRPVRILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINVEKGRALIAERGLEDIARFEQGDAFDRDSLAALDPAPTLA  213 (311)
T ss_pred             CCceEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHHHHHHHHHHcCCccceEEEecCCCCHhHhhccCCCCCEE
Confidence            45679999999999999999999997  78999998 887776654       24459999999982     2 336888


Q ss_pred             Eee
Q 034578           86 FMK   88 (90)
Q Consensus        86 ~l~   88 (90)
                      +.+
T Consensus       214 iVs  216 (311)
T PF12147_consen  214 IVS  216 (311)
T ss_pred             EEe
Confidence            876

It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.

>PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A

Probab=97.81  E-value=4.9e-05  Score=50.91  Aligned_cols=66  Identities=17%  Similarity=0.247  Sum_probs=49.1

Q ss_pred             CCCCeEEEecCCchHHHHHHHHHCCCCeEEEeeh-HHHHHhCCC-----CCCeeEEEecCCCCCC-c-ccEEEe
Q 034578           22 NNIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDL-QHVIATAPT-----HEGVSHVGGDMFDAIP-N-ADAVFM   87 (90)
Q Consensus        22 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~-----~~rv~~~~~d~~~~~p-~-~D~i~l   87 (90)
                      ..+.+|+|||||.--++.-.....|+++.+++|+ ..+++....     ..+.+....|.....| . +|+.++
T Consensus       104 ~~p~sVlDigCGlNPlalp~~~~~~~a~Y~a~DID~~~ve~l~~~l~~l~~~~~~~v~Dl~~~~~~~~~DlaLl  177 (251)
T PF07091_consen  104 PPPDSVLDIGCGLNPLALPWMPEAPGATYIAYDIDSQLVEFLNAFLAVLGVPHDARVRDLLSDPPKEPADLALL  177 (251)
T ss_dssp             ---SEEEEET-TTCHHHHHTTTSSTT-EEEEEESBHHHHHHHHHHHHHTT-CEEEEEE-TTTSHTTSEESEEEE
T ss_pred             CCCchhhhhhccCCceehhhcccCCCcEEEEEeCCHHHHHHHHHHHHhhCCCcceeEeeeeccCCCCCcchhhH
Confidence            3478999999999999999888889999999999 887776543     4677888889998544 3 898876

>COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair]

Probab=97.78  E-value=9.5e-05  Score=52.21  Aligned_cols=82  Identities=18%  Similarity=0.150  Sum_probs=64.3

Q ss_pred             chhhhHHHHHhhcccCCCCCCCeEEEecCCchHHHHHHHHHCCCC-----------------------------------
Q 034578            4 TTKITMKAFVSHYKVDGFNNIRSMVDVGGGTGTVLAEIVKSYPHI-----------------------------------   48 (90)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~-----------------------------------   48 (90)
                      +-+.++.+++..-.   |.+...++|==||+|.++++.+...++.                                   
T Consensus       175 LketLAaAil~lag---w~~~~pl~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~~~lw~~~~~ea~~~a~~~  251 (381)
T COG0116         175 LKETLAAAILLLAG---WKPDEPLLDPMCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFDKDLWDKLREEAEERARRG  251 (381)
T ss_pred             chHHHHHHHHHHcC---CCCCCccccCCCCccHHHHHHHHhccccCCccccccchhhhhhccHHHHHHHHHHHHHHHhhc
Confidence            44567788887777   4555799999999999999999887632                                   


Q ss_pred             ----eEEEeeh-HHHHHhCCC-------CCCeeEEEecCCC-CCC--cccEEEee
Q 034578           49 ----KGINFDL-QHVIATAPT-------HEGVSHVGGDMFD-AIP--NADAVFMK   88 (90)
Q Consensus        49 ----~~~~~D~-p~~~~~a~~-------~~rv~~~~~d~~~-~~p--~~D~i~l~   88 (90)
                          ..+++|+ |.+++.|+.       .+.|+|..+|+.. .-|  ++|+++++
T Consensus       252 ~~~~~~~G~Did~r~i~~Ak~NA~~AGv~d~I~f~~~d~~~l~~~~~~~gvvI~N  306 (381)
T COG0116         252 KELPIIYGSDIDPRHIEGAKANARAAGVGDLIEFKQADATDLKEPLEEYGVVISN  306 (381)
T ss_pred             CccceEEEecCCHHHHHHHHHHHHhcCCCceEEEEEcchhhCCCCCCcCCEEEeC
Confidence                2679999 999998876       3679999999976 333  48998875

>KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis]

Probab=97.74  E-value=3.9e-05  Score=55.77  Aligned_cols=52  Identities=17%  Similarity=0.341  Sum_probs=44.4

Q ss_pred             CCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeeh-HHHHHhCCCC------CCeeEEEec
Q 034578           21 FNNIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDL-QHVIATAPTH------EGVSHVGGD   74 (90)
Q Consensus        21 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~------~rv~~~~~d   74 (90)
                      +.....++|+.||||.++.++++.  -.+++++++ |++++-|+++      .+.+|+.|-
T Consensus       381 l~~~k~llDv~CGTG~iglala~~--~~~ViGvEi~~~aV~dA~~nA~~NgisNa~Fi~gq  439 (534)
T KOG2187|consen  381 LPADKTLLDVCCGTGTIGLALARG--VKRVIGVEISPDAVEDAEKNAQINGISNATFIVGQ  439 (534)
T ss_pred             CCCCcEEEEEeecCCceehhhhcc--ccceeeeecChhhcchhhhcchhcCccceeeeecc
Confidence            556689999999999999999986  467899999 9999988763      689999983

>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]

Probab=97.74  E-value=6.5e-05  Score=53.92  Aligned_cols=76  Identities=17%  Similarity=0.215  Sum_probs=57.4

Q ss_pred             hhHHHHHhhcccCCCCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeeh-HHHHHhCCCC------CCeeEEEecCCC--
Q 034578            7 ITMKAFVSHYKVDGFNNIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDL-QHVIATAPTH------EGVSHVGGDMFD--   77 (90)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~------~rv~~~~~d~~~--   77 (90)
                      .+.+.+++..+   ..+..+++|+=||.|.++..++++  ..+++++|+ |++++.|+++      .+++|..++..+  
T Consensus       280 kl~~~a~~~~~---~~~~~~vlDlYCGvG~f~l~lA~~--~~~V~gvEi~~~aV~~A~~NA~~n~i~N~~f~~~~ae~~~  354 (432)
T COG2265         280 KLYETALEWLE---LAGGERVLDLYCGVGTFGLPLAKR--VKKVHGVEISPEAVEAAQENAAANGIDNVEFIAGDAEEFT  354 (432)
T ss_pred             HHHHHHHHHHh---hcCCCEEEEeccCCChhhhhhccc--CCEEEEEecCHHHHHHHHHHHHHcCCCcEEEEeCCHHHHh
Confidence            34444445444   446679999999999999999965  467999999 9999988762      669999999876  


Q ss_pred             -CCC---cccEEEe
Q 034578           78 -AIP---NADAVFM   87 (90)
Q Consensus        78 -~~p---~~D~i~l   87 (90)
                       .+.   .+|.|++
T Consensus       355 ~~~~~~~~~d~Vvv  368 (432)
T COG2265         355 PAWWEGYKPDVVVV  368 (432)
T ss_pred             hhccccCCCCEEEE
Confidence             222   2688876

>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G

Probab=97.71  E-value=0.00016  Score=46.47  Aligned_cols=64  Identities=14%  Similarity=0.221  Sum_probs=46.8

Q ss_pred             eEEEecCCchHHHHHHHHHCCCCeEEEeeh-HH---HHHhCCC---CCCeeEEEecCCC-CCC-cccEEEeec
Q 034578           26 SMVDVGGGTGTVLAEIVKSYPHIKGINFDL-QH---VIATAPT---HEGVSHVGGDMFD-AIP-NADAVFMKV   89 (90)
Q Consensus        26 ~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~---~~~~a~~---~~rv~~~~~d~~~-~~p-~~D~i~l~~   89 (90)
                      +++|||+|.|.=++-++=.+|+.+++.+|. ..   .++.+..   -++++++.+...+ ..+ .||+++.+-
T Consensus        51 ~~lDiGSGaGfPGipLaI~~p~~~~~LvEs~~KK~~FL~~~~~~L~L~nv~v~~~R~E~~~~~~~fd~v~aRA  123 (184)
T PF02527_consen   51 KVLDIGSGAGFPGIPLAIARPDLQVTLVESVGKKVAFLKEVVRELGLSNVEVINGRAEEPEYRESFDVVTARA  123 (184)
T ss_dssp             EEEEETSTTTTTHHHHHHH-TTSEEEEEESSHHHHHHHHHHHHHHT-SSEEEEES-HHHTTTTT-EEEEEEES
T ss_pred             eEEecCCCCCChhHHHHHhCCCCcEEEEeCCchHHHHHHHHHHHhCCCCEEEEEeeecccccCCCccEEEeeh
Confidence            899999999999999999999999999995 33   2222221   3679999998877 333 399998764

Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.

>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH

Probab=97.70  E-value=2.6e-05  Score=49.99  Aligned_cols=64  Identities=16%  Similarity=0.254  Sum_probs=48.6

Q ss_pred             CCCeEEEecCCchHHHHHHHHHCCCCeEEEeeh-HHHHHhCCC-------CCCeeEEEecCCCC---C---C-cccEEEe
Q 034578           23 NIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDL-QHVIATAPT-------HEGVSHVGGDMFDA---I---P-NADAVFM   87 (90)
Q Consensus        23 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~-------~~rv~~~~~d~~~~---~---p-~~D~i~l   87 (90)
                      ...++||+=||||.++.+.+.+. ..+++.+|. +.+++..++       .++++.+.+|.+..   .   . .+|+|++
T Consensus        42 ~g~~vLDLFaGSGalGlEALSRG-A~~v~fVE~~~~a~~~i~~N~~~l~~~~~~~v~~~d~~~~l~~~~~~~~~fDiIfl  120 (183)
T PF03602_consen   42 EGARVLDLFAGSGALGLEALSRG-AKSVVFVEKNRKAIKIIKKNLEKLGLEDKIRVIKGDAFKFLLKLAKKGEKFDIIFL  120 (183)
T ss_dssp             TT-EEEETT-TTSHHHHHHHHTT--SEEEEEES-HHHHHHHHHHHHHHT-GGGEEEEESSHHHHHHHHHHCTS-EEEEEE
T ss_pred             CCCeEEEcCCccCccHHHHHhcC-CCeEEEEECCHHHHHHHHHHHHHhCCCcceeeeccCHHHHHHhhcccCCCceEEEE
Confidence            46899999999999999999875 357999999 888887765       25689999997652   2   2 3899987

They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.

>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes

Probab=97.69  E-value=9.8e-05  Score=48.19  Aligned_cols=36  Identities=17%  Similarity=0.336  Sum_probs=30.7

Q ss_pred             CCC-eEEEecCCchHHHHHHHHHCCCCeEEEeeh-HHH
Q 034578           23 NIR-SMVDVGGGTGTVLAEIVKSYPHIKGINFDL-QHV   58 (90)
Q Consensus        23 ~~~-~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~   58 (90)
                      ... +||+||+|||..+..+++++|+++-.-.|. +..
T Consensus        24 ~~~~~vLEiaSGtGqHa~~FA~~lP~l~WqPSD~~~~~   61 (204)
T PF06080_consen   24 DSGTRVLEIASGTGQHAVYFAQALPHLTWQPSDPDDNL   61 (204)
T ss_pred             ccCceEEEEcCCccHHHHHHHHHCCCCEEcCCCCChHH
Confidence            344 599999999999999999999999888886 443

The function of this family is unknown.

>PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2

Probab=97.68  E-value=4.5e-05  Score=53.28  Aligned_cols=64  Identities=17%  Similarity=0.294  Sum_probs=45.8

Q ss_pred             hhhHHHHHhhcccCCCCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeeh-HHHHHhCCCC------CCeeEEEecC
Q 034578            6 KITMKAFVSHYKVDGFNNIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDL-QHVIATAPTH------EGVSHVGGDM   75 (90)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~------~rv~~~~~d~   75 (90)
                      +.+.+.+++.++   ..+ ..++|+-||.|.++..+++.+  .+++++|. +++++.|+++      ++++|+.++.
T Consensus       183 ~~l~~~~~~~l~---~~~-~~vlDlycG~G~fsl~la~~~--~~V~gvE~~~~av~~A~~Na~~N~i~n~~f~~~~~  253 (352)
T PF05958_consen  183 EKLYEQALEWLD---LSK-GDVLDLYCGVGTFSLPLAKKA--KKVIGVEIVEEAVEDARENAKLNGIDNVEFIRGDA  253 (352)
T ss_dssp             HHHHHHHHHHCT---T-T-TEEEEES-TTTCCHHHHHCCS--SEEEEEES-HHHHHHHHHHHHHTT--SEEEEE--S
T ss_pred             HHHHHHHHHHhh---cCC-CcEEEEeecCCHHHHHHHhhC--CeEEEeeCCHHHHHHHHHHHHHcCCCcceEEEeec
Confidence            344555566555   333 379999999999999999976  46899999 9999988762      6799987653

1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B.

>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family

Probab=97.68  E-value=0.0001  Score=53.76  Aligned_cols=66  Identities=14%  Similarity=0.208  Sum_probs=47.4

Q ss_pred             CCCeEEEecCCchHHHHHHHHHCCC--------CeEEEeeh-HHHHHhCCCC----C--CeeEEEecCCCC--------C
Q 034578           23 NIRSMVDVGGGTGTVLAEIVKSYPH--------IKGINFDL-QHVIATAPTH----E--GVSHVGGDMFDA--------I   79 (90)
Q Consensus        23 ~~~~vlDvG~G~G~~~~~l~~~~p~--------~~~~~~D~-p~~~~~a~~~----~--rv~~~~~d~~~~--------~   79 (90)
                      ...+|+|.|||+|.++.+++++.+.        ..+.++|+ |.+++.++.+    .  .+....+|+...        .
T Consensus        31 ~~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a~~~l~~~~~~~~~i~~~d~l~~~~~~~~~~~  110 (524)
T TIGR02987        31 TKTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKRAKKLLGEFALLEINVINFNSLSYVLLNIESYL  110 (524)
T ss_pred             cceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHHHHHHHHhhcCCCCceeeeccccccccccccccc
Confidence            3468999999999999999987752        56899999 8888877541    2  345555665531        1


Q ss_pred             CcccEEEee
Q 034578           80 PNADAVFMK   88 (90)
Q Consensus        80 p~~D~i~l~   88 (90)
                      +.||+|+.+
T Consensus       111 ~~fD~IIgN  119 (524)
T TIGR02987       111 DLFDIVITN  119 (524)
T ss_pred             CcccEEEeC
Confidence            248999864

Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.

>KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis]

Probab=97.67  E-value=0.00042  Score=47.24  Aligned_cols=75  Identities=20%  Similarity=0.316  Sum_probs=58.7

Q ss_pred             HHHHhhcccCCCCCCCeEEEecCCchHHHHHHHHHC-CCCeEEEeeh-HHHHHhCCC-------CCCeeEEEecCCC-CC
Q 034578           10 KAFVSHYKVDGFNNIRSMVDVGGGTGTVLAEIVKSY-PHIKGINFDL-QHVIATAPT-------HEGVSHVGGDMFD-AI   79 (90)
Q Consensus        10 ~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~-p~~~~~~~D~-p~~~~~a~~-------~~rv~~~~~d~~~-~~   79 (90)
                      .-|+..++   ..+..+|++-|.|+|.++.++++.. |.-++.-+|. ..-.+.|++       .+++++..-|.-. .+
T Consensus        95 a~I~~~L~---i~PGsvV~EsGTGSGSlShaiaraV~ptGhl~tfefH~~Ra~ka~eeFr~hgi~~~vt~~hrDVc~~GF  171 (314)
T KOG2915|consen   95 AMILSMLE---IRPGSVVLESGTGSGSLSHAIARAVAPTGHLYTFEFHETRAEKALEEFREHGIGDNVTVTHRDVCGSGF  171 (314)
T ss_pred             HHHHHHhc---CCCCCEEEecCCCcchHHHHHHHhhCcCcceEEEEecHHHHHHHHHHHHHhCCCcceEEEEeecccCCc
Confidence            44566666   6778999999999999999999995 8899999998 555555544       3789999999876 33


Q ss_pred             C--c--ccEEEe
Q 034578           80 P--N--ADAVFM   87 (90)
Q Consensus        80 p--~--~D~i~l   87 (90)
                      +  +  +|.|+|
T Consensus       172 ~~ks~~aDaVFL  183 (314)
T KOG2915|consen  172 LIKSLKADAVFL  183 (314)
T ss_pred             cccccccceEEE
Confidence            2  2  899887

>KOG2361 consensus Predicted methyltransferase [General function prediction only]

Probab=97.65  E-value=9.1e-05  Score=49.56  Aligned_cols=64  Identities=19%  Similarity=0.316  Sum_probs=50.4

Q ss_pred             CeEEEecCCchHHHHHHHHHCCC--CeEEEeeh-HHHHHhCCCC-----CCeeEEEecCCCC-----CCc--ccEEEee
Q 034578           25 RSMVDVGGGTGTVLAEIVKSYPH--IKGINFDL-QHVIATAPTH-----EGVSHVGGDMFDA-----IPN--ADAVFMK   88 (90)
Q Consensus        25 ~~vlDvG~G~G~~~~~l~~~~p~--~~~~~~D~-p~~~~~a~~~-----~rv~~~~~d~~~~-----~p~--~D~i~l~   88 (90)
                      .+|+.||||.|...--+++..|+  +++.+.|. |.+++.-+++     .|+.-...|+..+     ++.  .|+++|-
T Consensus        73 ~~ilEvGCGvGNtvfPll~~~~n~~l~v~acDfsp~Ai~~vk~~~~~~e~~~~afv~Dlt~~~~~~~~~~~svD~it~I  151 (264)
T KOG2361|consen   73 ETILEVGCGVGNTVFPLLKTSPNNRLKVYACDFSPRAIELVKKSSGYDESRVEAFVWDLTSPSLKEPPEEGSVDIITLI  151 (264)
T ss_pred             hhheeeccCCCcccchhhhcCCCCCeEEEEcCCChHHHHHHHhccccchhhhcccceeccchhccCCCCcCccceEEEE
Confidence            47999999999999999999988  99999999 9999987763     4566666676652     222  6887763

>PRK10611 chemotaxis methyltransferase CheR; Provisional

Probab=97.63  E-value=0.00013  Score=49.94  Aligned_cols=67  Identities=15%  Similarity=0.184  Sum_probs=50.3

Q ss_pred             CCeEEEecCCchH----HHHHHHHHCC----CCeEEEeeh-HHHHHhCCC------------------------------
Q 034578           24 IRSMVDVGGGTGT----VLAEIVKSYP----HIKGINFDL-QHVIATAPT------------------------------   64 (90)
Q Consensus        24 ~~~vlDvG~G~G~----~~~~l~~~~p----~~~~~~~D~-p~~~~~a~~------------------------------   64 (90)
                      .-+|...||+||.    ++..+.+..+    +.++++.|+ +.+++.|++                              
T Consensus       116 ~irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~~aL~~Ar~G~Y~~~~~r~~p~~~~~ryF~~~~~~~~~~  195 (287)
T PRK10611        116 EYRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKARSGIYRQEELKTLSPQQLQRYFMRGTGPHEGL  195 (287)
T ss_pred             CEEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCHHHHHHHHhCCCCHHHHhcCCHHHHHHHcccccCCCCce
Confidence            4689999999998    4444444332    478999999 999888764                              


Q ss_pred             -------CCCeeEEEecCCC-CCC--c-ccEEEeecC
Q 034578           65 -------HEGVSHVGGDMFD-AIP--N-ADAVFMKVA   90 (90)
Q Consensus        65 -------~~rv~~~~~d~~~-~~p--~-~D~i~l~~v   90 (90)
                             ..+|+|..+|+.+ ++|  . +|+|++++|
T Consensus       196 ~~v~~~lr~~V~F~~~NL~~~~~~~~~~fD~I~cRNv  232 (287)
T PRK10611        196 VRVRQELANYVDFQQLNLLAKQWAVPGPFDAIFCRNV  232 (287)
T ss_pred             EEEChHHHccCEEEcccCCCCCCccCCCcceeeHhhH
Confidence                   0457899999998 443  3 999999875

>PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria

Probab=97.63  E-value=0.00022  Score=49.27  Aligned_cols=67  Identities=16%  Similarity=0.189  Sum_probs=51.9

Q ss_pred             hHHHHHhhcccCCCCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeeh-HHHHHhCCC-----CCCeeEEEecCCC
Q 034578            8 TMKAFVSHYKVDGFNNIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDL-QHVIATAPT-----HEGVSHVGGDMFD   77 (90)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~-----~~rv~~~~~d~~~   77 (90)
                      +.+.+++.+.   ..+....+|.=-|.|..+.++++++|..+++++|. |.+++.+++     .+|+.++.++|.+
T Consensus         8 ll~Evl~~L~---~~~~g~~vD~T~G~GGHS~aiL~~~~~~~li~~DrD~~a~~~a~~~l~~~~~r~~~~~~~F~~   80 (310)
T PF01795_consen    8 LLKEVLEALN---PKPGGIYVDCTFGGGGHSKAILEKLPNGRLIGIDRDPEALERAKERLKKFDDRFIFIHGNFSN   80 (310)
T ss_dssp             THHHHHHHHT-----TT-EEEETT-TTSHHHHHHHHT-TT-EEEEEES-HHHHHHHHCCTCCCCTTEEEEES-GGG
T ss_pred             cHHHHHHhhC---cCCCceEEeecCCcHHHHHHHHHhCCCCeEEEecCCHHHHHHHHHHHhhccceEEEEeccHHH
Confidence            4566777776   56678999999999999999999999999999999 999987765     4899999999875

The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A.

>PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) []

Probab=97.62  E-value=8.7e-05  Score=43.92  Aligned_cols=31  Identities=23%  Similarity=0.418  Sum_probs=26.5

Q ss_pred             CCCeEEEecCCchHHHHHHHHHCCCCeEEEeeh
Q 034578           23 NIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDL   55 (90)
Q Consensus        23 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~   55 (90)
                      +...++|+|||+|.+..-|.++  +.++.++|.
T Consensus        58 ~~~~FVDlGCGNGLLV~IL~~E--Gy~G~GiD~   88 (112)
T PF07757_consen   58 KFQGFVDLGCGNGLLVYILNSE--GYPGWGIDA   88 (112)
T ss_pred             CCCceEEccCCchHHHHHHHhC--CCCcccccc
Confidence            4678999999999999988887  677899993

; GO: 0008168 methyltransferase activity

>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes

Probab=97.59  E-value=0.00015  Score=45.75  Aligned_cols=49  Identities=16%  Similarity=0.305  Sum_probs=37.4

Q ss_pred             hhhHHHHHhhcccCCCC--CCCeEEEecCCchHHHHHHHHHC-CCCeEEEeehH
Q 034578            6 KITMKAFVSHYKVDGFN--NIRSMVDVGGGTGTVLAEIVKSY-PHIKGINFDLQ   56 (90)
Q Consensus         6 ~~~~~~~~~~~~~~~~~--~~~~vlDvG~G~G~~~~~l~~~~-p~~~~~~~D~p   56 (90)
                      ...-..+.+.++.  +.  ...++||+||++|.++..++++. +..+++++|+.
T Consensus         6 ~~KL~ei~~~~~~--~~~~~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~   57 (181)
T PF01728_consen    6 AFKLYEIDEKFKI--FKPGKGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLG   57 (181)
T ss_dssp             HHHHHHHHHTTSS--S-TTTTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESS
T ss_pred             HHHHHHHHHHCCC--CCcccccEEEEcCCcccceeeeeeecccccceEEEEecc
Confidence            3344566667762  33  34899999999999999999997 78899999983

RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....

>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]

Probab=97.59  E-value=0.00022  Score=46.91  Aligned_cols=66  Identities=18%  Similarity=0.280  Sum_probs=50.3

Q ss_pred             CCeEEEecCCchHHHHHHHHHCCCCeEEEeeh-HH---HHHhCCC---CCCeeEEEecCCC-C-CCc-ccEEEeec
Q 034578           24 IRSMVDVGGGTGTVLAEIVKSYPHIKGINFDL-QH---VIATAPT---HEGVSHVGGDMFD-A-IPN-ADAVFMKV   89 (90)
Q Consensus        24 ~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~---~~~~a~~---~~rv~~~~~d~~~-~-~p~-~D~i~l~~   89 (90)
                      ..+++|||+|.|.=++-++-.+|+.+++.+|. ..   -++.+.+   -++++++.+...+ . -+. ||+++.+-
T Consensus        68 ~~~~~DIGSGaGfPGipLAI~~p~~~vtLles~~Kk~~FL~~~~~eL~L~nv~i~~~RaE~~~~~~~~~D~vtsRA  143 (215)
T COG0357          68 AKRVLDIGSGAGFPGIPLAIAFPDLKVTLLESLGKKIAFLREVKKELGLENVEIVHGRAEEFGQEKKQYDVVTSRA  143 (215)
T ss_pred             CCEEEEeCCCCCCchhhHHHhccCCcEEEEccCchHHHHHHHHHHHhCCCCeEEehhhHhhcccccccCcEEEeeh
Confidence            58999999999999999998899999999995 32   2333322   3779999988866 2 234 99998763

>COG3897 Predicted methyltransferase [General function prediction only]

Probab=97.55  E-value=0.00023  Score=46.40  Aligned_cols=68  Identities=13%  Similarity=0.193  Sum_probs=49.8

Q ss_pred             CCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeeh-HHHHHhCCCC-----CCeeEEEecCCCCCCcccEEEeec
Q 034578           21 FNNIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDL-QHVIATAPTH-----EGVSHVGGDMFDAIPNADAVFMKV   89 (90)
Q Consensus        21 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~-----~rv~~~~~d~~~~~p~~D~i~l~~   89 (90)
                      .-..++|||+|.|+|..++..++.. ...++.-|+ |...+..+-+     -.+.++..|...+-+.+|+++.+-
T Consensus        77 tVrgkrVLd~gagsgLvaIAaa~aG-A~~v~a~d~~P~~~~ai~lNa~angv~i~~~~~d~~g~~~~~Dl~LagD  150 (218)
T COG3897          77 TVRGKRVLDLGAGSGLVAIAAARAG-AAEVVAADIDPWLEQAIRLNAAANGVSILFTHADLIGSPPAFDLLLAGD  150 (218)
T ss_pred             ccccceeeecccccChHHHHHHHhh-hHHHHhcCCChHHHHHhhcchhhccceeEEeeccccCCCcceeEEEeec
Confidence            3356899999999999999988874 344666666 7766655542     458888888776445599998864

>KOG4300 consensus Predicted methyltransferase [General function prediction only]

Probab=97.53  E-value=7.9e-05  Score=49.05  Aligned_cols=65  Identities=20%  Similarity=0.154  Sum_probs=44.9

Q ss_pred             CCCeEEEecCCchHHHHHHHHHCCCCeEEEeeh-HHHHHhCCC------CCCee-EEEecCCC-C-CCc--ccEEEee
Q 034578           23 NIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDL-QHVIATAPT------HEGVS-HVGGDMFD-A-IPN--ADAVFMK   88 (90)
Q Consensus        23 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~------~~rv~-~~~~d~~~-~-~p~--~D~i~l~   88 (90)
                      ....+|+||||||..-...- --|..++|++|. |.|-+.+.+      ...+. |+.++..+ + +++  +|+|+..
T Consensus        76 ~K~~vLEvgcGtG~Nfkfy~-~~p~~svt~lDpn~~mee~~~ks~~E~k~~~~~~fvva~ge~l~~l~d~s~DtVV~T  152 (252)
T KOG4300|consen   76 GKGDVLEVGCGTGANFKFYP-WKPINSVTCLDPNEKMEEIADKSAAEKKPLQVERFVVADGENLPQLADGSYDTVVCT  152 (252)
T ss_pred             CccceEEecccCCCCccccc-CCCCceEEEeCCcHHHHHHHHHHHhhccCcceEEEEeechhcCcccccCCeeeEEEE
Confidence            34568999999998544322 136788999998 888776643      24555 88887765 3 444  8988754

>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase

Probab=97.53  E-value=0.00025  Score=50.11  Aligned_cols=63  Identities=8%  Similarity=0.103  Sum_probs=50.7

Q ss_pred             CeEEEecCCchHHHHHHHHHCCC-CeEEEeeh-HHHHHhCCCC------CCeeEEEecCCCCC---C-cccEEEe
Q 034578           25 RSMVDVGGGTGTVLAEIVKSYPH-IKGINFDL-QHVIATAPTH------EGVSHVGGDMFDAI---P-NADAVFM   87 (90)
Q Consensus        25 ~~vlDvG~G~G~~~~~l~~~~p~-~~~~~~D~-p~~~~~a~~~------~rv~~~~~d~~~~~---p-~~D~i~l   87 (90)
                      -++||.-||+|..+++.+++.++ -++++.|+ |.+++.++++      .+++++.+|....+   . .+|+|.+
T Consensus        46 ~~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~~Av~~i~~N~~~N~~~~~~v~~~Da~~~l~~~~~~fDvIdl  120 (374)
T TIGR00308        46 INIADALSASGIRAIRYAHEIEGVREVFANDINPKAVESIKNNVEYNSVENIEVPNEDAANVLRYRNRKFHVIDI  120 (374)
T ss_pred             CEEEECCCchhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEchhHHHHHHHhCCCCCEEEe
Confidence            48999999999999999998654 57999999 9999888762      35788888887622   2 3898876

This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.

>KOG4058 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.51  E-value=0.00011  Score=46.13  Aligned_cols=72  Identities=14%  Similarity=0.246  Sum_probs=55.0

Q ss_pred             hhHHHHHhhcccCCCCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeeh-HHHHHhCCC-------CCCeeEEEecCCC-
Q 034578            7 ITMKAFVSHYKVDGFNNIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDL-QHVIATAPT-------HEGVSHVGGDMFD-   77 (90)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~-------~~rv~~~~~d~~~-   77 (90)
                      .-.++++..++   -.+..+++|+|.|.|.+..+.++.. -...+++++ |..+..++-       ..+.+|..-|+++ 
T Consensus        59 eQv~nVLSll~---~n~~GklvDlGSGDGRiVlaaar~g-~~~a~GvELNpwLVaysrl~a~R~g~~k~trf~RkdlwK~  134 (199)
T KOG4058|consen   59 EQVENVLSLLR---GNPKGKLVDLGSGDGRIVLAAARCG-LRPAVGVELNPWLVAYSRLHAWRAGCAKSTRFRRKDLWKV  134 (199)
T ss_pred             HHHHHHHHHcc---CCCCCcEEeccCCCceeehhhhhhC-CCcCCceeccHHHHHHHHHHHHHHhcccchhhhhhhhhhc
Confidence            34566677666   3556899999999999999988875 456799999 998887763       3678888888887 


Q ss_pred             CCCcc
Q 034578           78 AIPNA   82 (90)
Q Consensus        78 ~~p~~   82 (90)
                      ++.+|
T Consensus       135 dl~dy  139 (199)
T KOG4058|consen  135 DLRDY  139 (199)
T ss_pred             ccccc
Confidence            56554

>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]

Probab=97.44  E-value=0.00062  Score=44.51  Aligned_cols=67  Identities=21%  Similarity=0.241  Sum_probs=50.5

Q ss_pred             hhhhHHHHHhhcccCCCCCCCeEEEecCCchHHHHHHHHHC-CCCeEEEeehHHHHHhCCCCCCeeEEEecCCC
Q 034578            5 TKITMKAFVSHYKVDGFNNIRSMVDVGGGTGTVLAEIVKSY-PHIKGINFDLQHVIATAPTHEGVSHVGGDMFD   77 (90)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~-p~~~~~~~D~p~~~~~a~~~~rv~~~~~d~~~   77 (90)
                      +..--..|.+.+.  .+++...|+|+|+-+|..+..+++.. +..+++++|+.++-.    -+.+.++++|++.
T Consensus        29 Aa~KL~el~~k~~--i~~~~~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p~~~----~~~V~~iq~d~~~   96 (205)
T COG0293          29 AAYKLLELNEKFK--LFKPGMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILPMKP----IPGVIFLQGDITD   96 (205)
T ss_pred             HHHHHHHHHHhcC--eecCCCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECccccc----CCCceEEeeeccC
Confidence            3344455666665  46778999999999999999998885 456799999844422    2459999999987

>COG2384 Predicted SAM-dependent methyltransferase [General function prediction only]

Probab=97.43  E-value=0.00057  Score=45.14  Aligned_cols=65  Identities=15%  Similarity=0.224  Sum_probs=53.1

Q ss_pred             CCeEEEecCCchHHHHHHHHHCCCCeEEEeeh-HHHHHhCCC-------CCCeeEEEecCCCCCC-c--ccEEEee
Q 034578           24 IRSMVDVGGGTGTVLAEIVKSYPHIKGINFDL-QHVIATAPT-------HEGVSHVGGDMFDAIP-N--ADAVFMK   88 (90)
Q Consensus        24 ~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~-------~~rv~~~~~d~~~~~p-~--~D~i~l~   88 (90)
                      ..++.||||-.+.+...+.+.+|..++++.|+ |..++.|.+       .+|++...+|-+.++. +  .|+++..
T Consensus        17 ~~~iaDIGsDHAYLp~~Lv~~~~~~~~va~eV~~gpl~~a~~~v~~~~l~~~i~vr~~dgl~~l~~~d~~d~ivIA   92 (226)
T COG2384          17 GARIADIGSDHAYLPIYLVKNNPASTAVAGEVVPGPLESAIRNVKKNNLSERIDVRLGDGLAVLELEDEIDVIVIA   92 (226)
T ss_pred             CCceeeccCchhHhHHHHHhcCCcceEEEeecccCHHHHHHHHHHhcCCcceEEEeccCCccccCccCCcCEEEEe
Confidence            34599999999999999999999999999998 777766644       3788999999887652 2  7877653

>KOG2730 consensus Methylase [General function prediction only]

Probab=97.34  E-value=0.00013  Score=48.41  Aligned_cols=53  Identities=26%  Similarity=0.355  Sum_probs=44.6

Q ss_pred             CCCeEEEecCCchHHHHHHHHHCCCCeEEEeeh-HHHHHhCCCC-------CCeeEEEecCCC
Q 034578           23 NIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDL-QHVIATAPTH-------EGVSHVGGDMFD   77 (90)
Q Consensus        23 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~-------~rv~~~~~d~~~   77 (90)
                      ....|+|.=||-|.-.+..+.++|.  ++++|+ |.-++.|+.+       +|++|++|||++
T Consensus        94 ~~~~iidaf~g~gGntiqfa~~~~~--VisIdiDPikIa~AkhNaeiYGI~~rItFI~GD~ld  154 (263)
T KOG2730|consen   94 NAEVIVDAFCGVGGNTIQFALQGPY--VIAIDIDPVKIACARHNAEVYGVPDRITFICGDFLD  154 (263)
T ss_pred             CcchhhhhhhcCCchHHHHHHhCCe--EEEEeccHHHHHHHhccceeecCCceeEEEechHHH
Confidence            5678999999999999999999876  577777 8877777762       799999999987

>KOG3115 consensus Methyltransferase-like protein [General function prediction only]

Probab=97.33  E-value=0.00015  Score=47.60  Aligned_cols=36  Identities=19%  Similarity=0.466  Sum_probs=31.6

Q ss_pred             CeEEEecCCchHHHHHHHHHCCCCeEEEeeh-HHHHH
Q 034578           25 RSMVDVGGGTGTVLAEIVKSYPHIKGINFDL-QHVIA   60 (90)
Q Consensus        25 ~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~   60 (90)
                      -.+.|||||.|.++..|+..||+--++++++ -.+.+
T Consensus        62 vefaDIGCGyGGLlv~Lsp~fPdtLiLGmEIR~KVsd   98 (249)
T KOG3115|consen   62 VEFADIGCGYGGLLMKLAPKFPDTLILGMEIRDKVSD   98 (249)
T ss_pred             ceEEeeccCccchhhhccccCccceeeeehhhHHHHH
Confidence            4699999999999999999999999999997 55433

>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes

Probab=97.33  E-value=0.0011  Score=44.83  Aligned_cols=65  Identities=12%  Similarity=0.152  Sum_probs=45.2

Q ss_pred             CCCeEEEecCCchHHHHHHHHHCCCCeEEEeeh-HHHHHhCCCCCCeeEEEecCCCCCC-cccEEEeecC
Q 034578           23 NIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDL-QHVIATAPTHEGVSHVGGDMFDAIP-NADAVFMKVA   90 (90)
Q Consensus        23 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~~rv~~~~~d~~~~~p-~~D~i~l~~v   90 (90)
                      +..++||||.|.|.+...++..|.+  +.+-|. +.|..+-++.+ .+++..+=++.-+ .+|+|.+-|+
T Consensus        94 ~~~~lLDlGAGdG~VT~~l~~~f~~--v~aTE~S~~Mr~rL~~kg-~~vl~~~~w~~~~~~fDvIscLNv  160 (265)
T PF05219_consen   94 KDKSLLDLGAGDGEVTERLAPLFKE--VYATEASPPMRWRLSKKG-FTVLDIDDWQQTDFKFDVISCLNV  160 (265)
T ss_pred             cCCceEEecCCCcHHHHHHHhhcce--EEeecCCHHHHHHHHhCC-CeEEehhhhhccCCceEEEeehhh
Confidence            4578999999999999999999877  566676 88877655432 3333333233223 3899987654

The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.

>PRK10742 putative methyltransferase; Provisional

Probab=97.20  E-value=0.0012  Score=44.34  Aligned_cols=73  Identities=15%  Similarity=0.150  Sum_probs=53.7

Q ss_pred             HHHHhhcccCCCCCCC--eEEEecCCchHHHHHHHHHCCCCeEEEeeh-HHHHHhCCC---------------CCCeeEE
Q 034578           10 KAFVSHYKVDGFNNIR--SMVDVGGGTGTVLAEIVKSYPHIKGINFDL-QHVIATAPT---------------HEGVSHV   71 (90)
Q Consensus        10 ~~~~~~~~~~~~~~~~--~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~---------------~~rv~~~   71 (90)
                      +.+++...   +.+..  +|||.=+|+|..+..++.+  +++++.+|. |.+....+.               ..|++++
T Consensus        76 ~~l~kAvg---lk~g~~p~VLD~TAGlG~Da~~las~--G~~V~~vEr~p~vaalL~dgL~ra~~~~~~~~~~~~ri~l~  150 (250)
T PRK10742         76 EAVAKAVG---IKGDYLPDVVDATAGLGRDAFVLASV--GCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLI  150 (250)
T ss_pred             cHHHHHhC---CCCCCCCEEEECCCCccHHHHHHHHc--CCEEEEEECCHHHHHHHHHHHHHhhhccccchhhhceEEEE
Confidence            55666665   44444  8999999999999999998  677999997 664432211               1579999


Q ss_pred             EecCCCC---CCc-ccEEEe
Q 034578           72 GGDMFDA---IPN-ADAVFM   87 (90)
Q Consensus        72 ~~d~~~~---~p~-~D~i~l   87 (90)
                      .+|..+.   .+. +|+|++
T Consensus       151 ~~da~~~L~~~~~~fDVVYl  170 (250)
T PRK10742        151 HASSLTALTDITPRPQVVYL  170 (250)
T ss_pred             eCcHHHHHhhCCCCCcEEEE
Confidence            9998763   333 899987

>COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane]

Probab=97.18  E-value=0.0017  Score=44.73  Aligned_cols=67  Identities=21%  Similarity=0.215  Sum_probs=57.0

Q ss_pred             hHHHHHhhcccCCCCCCCeEEEecCCchHHHHHHHHHCCCCe-EEEeeh-HHHHHhCCC-----CCCeeEEEecCCC
Q 034578            8 TMKAFVSHYKVDGFNNIRSMVDVGGGTGTVLAEIVKSYPHIK-GINFDL-QHVIATAPT-----HEGVSHVGGDMFD   77 (90)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~-~~~~D~-p~~~~~a~~-----~~rv~~~~~d~~~   77 (90)
                      +.+.+++.+.   ..+....+|.==|.|..+..+++++|... .+++|. |.+++.|++     .+|++++.++|.+
T Consensus        11 Ll~E~i~~L~---~~~~giyiD~TlG~GGHS~~iL~~l~~~~~li~~DrD~~Ai~~a~~~l~~~~~r~~~v~~~F~~   84 (314)
T COG0275          11 LLNEVVELLA---PKPDGIYIDGTLGAGGHSRAILEKLPDLGRLIGIDRDPQAIAIAKERLKEFDGRVTLVHGNFAN   84 (314)
T ss_pred             HHHHHHHhcc---cCCCcEEEEecCCCcHhHHHHHHhCCCCCeEEEEcCCHHHHHHHHHHhhccCCcEEEEeCcHHH
Confidence            4566777777   55678999999999999999999998665 999999 999999876     4799999998865

>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family

Probab=97.15  E-value=0.0023  Score=44.46  Aligned_cols=66  Identities=11%  Similarity=0.144  Sum_probs=45.6

Q ss_pred             hhHHHHHhhcccCCCCCCCeEEEecCCchHHHHHHHHHC----CCCeEEEeeh-HHHHHhCCC------CCCeeE--EEe
Q 034578            7 ITMKAFVSHYKVDGFNNIRSMVDVGGGTGTVLAEIVKSY----PHIKGINFDL-QHVIATAPT------HEGVSH--VGG   73 (90)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~----p~~~~~~~D~-p~~~~~a~~------~~rv~~--~~~   73 (90)
                      ..+..|++.++     +...++|+|||+|.=...|+++.    ...+.+.+|+ .++++.+.+      .+.+++  +.+
T Consensus        65 ~~~~~Ia~~i~-----~~~~lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~~~L~~a~~~L~~~~~p~l~v~~l~g  139 (319)
T TIGR03439        65 KHSSDIAASIP-----SGSMLVELGSGNLRKVGILLEALERQKKSVDYYALDVSRSELQRTLAELPLGNFSHVRCAGLLG  139 (319)
T ss_pred             HHHHHHHHhcC-----CCCEEEEECCCchHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHhhhhccCCCeEEEEEEe
Confidence            34556666665     34589999999998665555544    3578999998 677665533      255655  789


Q ss_pred             cCCC
Q 034578           74 DMFD   77 (90)
Q Consensus        74 d~~~   77 (90)
                      ||.+
T Consensus       140 dy~~  143 (319)
T TIGR03439       140 TYDD  143 (319)
T ss_pred             cHHH
Confidence            9876

This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).

>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]

Probab=97.14  E-value=0.002  Score=41.62  Aligned_cols=64  Identities=14%  Similarity=0.187  Sum_probs=50.6

Q ss_pred             CCCeEEEecCCchHHHHHHHHHCCCCeEEEeeh-HHHHHhCCC-------CCCeeEEEecCCCC---C---CcccEEEe
Q 034578           23 NIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDL-QHVIATAPT-------HEGVSHVGGDMFDA---I---PNADAVFM   87 (90)
Q Consensus        23 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~-------~~rv~~~~~d~~~~---~---p~~D~i~l   87 (90)
                      ...++||+=+|||.++.+.+.+. ..+++.+|. ..+++..++       ..+.+++..|....   .   +.||+|++
T Consensus        43 ~g~~~LDlFAGSGaLGlEAlSRG-A~~~~~vE~~~~a~~~l~~N~~~l~~~~~~~~~~~da~~~L~~~~~~~~FDlVfl  120 (187)
T COG0742          43 EGARVLDLFAGSGALGLEALSRG-AARVVFVEKDRKAVKILKENLKALGLEGEARVLRNDALRALKQLGTREPFDLVFL  120 (187)
T ss_pred             CCCEEEEecCCccHhHHHHHhCC-CceEEEEecCHHHHHHHHHHHHHhCCccceEEEeecHHHHHHhcCCCCcccEEEe
Confidence            35799999999999999999985 457899998 777777665       37888888888741   2   12899986

>PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins

Probab=97.12  E-value=0.00092  Score=45.33  Aligned_cols=55  Identities=25%  Similarity=0.381  Sum_probs=32.9

Q ss_pred             CCCeEEEecCCch--HHHHHHH-HHCCCCeEEEeeh-HHHHHhCCC----CCC--eeEEEecCCC
Q 034578           23 NIRSMVDVGGGTG--TVLAEIV-KSYPHIKGINFDL-QHVIATAPT----HEG--VSHVGGDMFD   77 (90)
Q Consensus        23 ~~~~vlDvG~G~G--~~~~~l~-~~~p~~~~~~~D~-p~~~~~a~~----~~r--v~~~~~d~~~   77 (90)
                      +...+||+|||--  ....+++ +..|+++++=+|. |-++..++.    +++  ..++.+|+.+
T Consensus        68 GIrQFLDlGsGlPT~~nvHevAq~~~P~aRVVYVD~DPvv~ah~ralL~~~~~g~t~~v~aD~r~  132 (267)
T PF04672_consen   68 GIRQFLDLGSGLPTAGNVHEVAQRVAPDARVVYVDNDPVVLAHARALLADNPRGRTAYVQADLRD  132 (267)
T ss_dssp             ---EEEEET--S--SS-HHHHHHHH-TT-EEEEEESSHHHHHCCHHHHTT-TTSEEEEEE--TT-
T ss_pred             CcceEEEcccCCCCCCCHhHHHHhhCCCceEEEECCCchHHHHHHhhhcCCCCccEEEEeCCCCC
Confidence            6688999999933  2344454 4479999999999 888887764    344  8999999987

; PDB: 3GIW_A 3GO4_A 2QE6_A.

>COG2521 Predicted archaeal methyltransferase [General function prediction only]

Probab=97.09  E-value=0.00076  Score=45.27  Aligned_cols=64  Identities=19%  Similarity=0.271  Sum_probs=51.7

Q ss_pred             CCCCeEEEecCCchHHHHHHHHHCCCCeEEEeeh-HHHHHhCCCC--------CCeeEEEecCCC---CCCc--ccEEE
Q 034578           22 NNIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDL-QHVIATAPTH--------EGVSHVGGDMFD---AIPN--ADAVF   86 (90)
Q Consensus        22 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~--------~rv~~~~~d~~~---~~p~--~D~i~   86 (90)
                      ++..+|||.+.|-|..+++.+++. ...++-++. |.+++.|.-+        .+++++.||.++   .+++  +|+|+
T Consensus       133 ~~G~rVLDtC~GLGYtAi~a~~rG-A~~VitvEkdp~VLeLa~lNPwSr~l~~~~i~iilGD~~e~V~~~~D~sfDaIi  210 (287)
T COG2521         133 KRGERVLDTCTGLGYTAIEALERG-AIHVITVEKDPNVLELAKLNPWSRELFEIAIKIILGDAYEVVKDFDDESFDAII  210 (287)
T ss_pred             ccCCEeeeeccCccHHHHHHHHcC-CcEEEEEeeCCCeEEeeccCCCCccccccccEEecccHHHHHhcCCccccceEe
Confidence            356899999999999999999974 237888888 9999988753        468999999887   4554  89886

>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]

Probab=97.08  E-value=0.00053  Score=48.76  Aligned_cols=62  Identities=15%  Similarity=0.198  Sum_probs=52.6

Q ss_pred             CCeEEEecCCchHHHHHHHHHCCCC-eEEEeeh-HHHHHhCCCC--------CCeeEEEecCCCCC----C---cccEEE
Q 034578           24 IRSMVDVGGGTGTVLAEIVKSYPHI-KGINFDL-QHVIATAPTH--------EGVSHVGGDMFDAI----P---NADAVF   86 (90)
Q Consensus        24 ~~~vlDvG~G~G~~~~~l~~~~p~~-~~~~~D~-p~~~~~a~~~--------~rv~~~~~d~~~~~----p---~~D~i~   86 (90)
                      .++|||+=|=||.++...+..  ++ ++|.+|+ ..+++.|+++        .+.+|+.+|.|+.+    .   .||+|+
T Consensus       218 GkrvLNlFsYTGgfSv~Aa~g--GA~~vt~VD~S~~al~~a~~N~~LNg~~~~~~~~i~~Dvf~~l~~~~~~g~~fDlIi  295 (393)
T COG1092         218 GKRVLNLFSYTGGFSVHAALG--GASEVTSVDLSKRALEWARENAELNGLDGDRHRFIVGDVFKWLRKAERRGEKFDLII  295 (393)
T ss_pred             CCeEEEecccCcHHHHHHHhc--CCCceEEEeccHHHHHHHHHHHHhcCCCccceeeehhhHHHHHHHHHhcCCcccEEE
Confidence            689999999999999999886  45 8999999 8899998872        67899999999832    2   399998


Q ss_pred             e
Q 034578           87 M   87 (90)
Q Consensus        87 l   87 (90)
                      +
T Consensus       296 l  296 (393)
T COG1092         296 L  296 (393)
T ss_pred             E
Confidence            7

>PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes

Probab=97.05  E-value=0.0015  Score=44.96  Aligned_cols=65  Identities=15%  Similarity=0.227  Sum_probs=40.9

Q ss_pred             CCeEEEecCCchHHHHHHHHHCCCCeEEEeeh-HHHHHhCCC--------CCCeeEEEe----cCCCCC--C-c-ccEEE
Q 034578           24 IRSMVDVGGGTGTVLAEIVKSYPHIKGINFDL-QHVIATAPT--------HEGVSHVGG----DMFDAI--P-N-ADAVF   86 (90)
Q Consensus        24 ~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~--------~~rv~~~~~----d~~~~~--p-~-~D~i~   86 (90)
                      .-++||||+|..++---|..+..+.++++.|+ +..++.|++        .++|+++..    +++..+  + + +|..+
T Consensus       103 ~v~glDIGTGAscIYpLLg~~~~~W~fvaTdID~~sl~~A~~nv~~N~~L~~~I~l~~~~~~~~i~~~i~~~~e~~dftm  182 (299)
T PF05971_consen  103 KVRGLDIGTGASCIYPLLGAKLYGWSFVATDIDPKSLESARENVERNPNLESRIELRKQKNPDNIFDGIIQPNERFDFTM  182 (299)
T ss_dssp             --EEEEES-TTTTHHHHHHHHHH--EEEEEES-HHHHHHHHHHHHHT-T-TTTEEEEE--ST-SSTTTSTT--S-EEEEE
T ss_pred             ceEeecCCccHHHHHHHHhhhhcCCeEEEecCCHHHHHHHHHHHHhccccccceEEEEcCCccccchhhhcccceeeEEe
Confidence            46899999998875444443434899999999 999988875        367888755    455533  1 2 77776


Q ss_pred             ee
Q 034578           87 MK   88 (90)
Q Consensus        87 l~   88 (90)
                      ++
T Consensus       183 CN  184 (299)
T PF05971_consen  183 CN  184 (299)
T ss_dssp             E-
T ss_pred             cC
Confidence            64

The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A.

>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases

Probab=96.99  E-value=0.0055  Score=40.39  Aligned_cols=66  Identities=15%  Similarity=0.215  Sum_probs=36.6

Q ss_pred             HHHHhhcccCCCCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeehHHHHHhCCCCCCeeEEEecCCC-CCCc--ccEEE
Q 034578           10 KAFVSHYKVDGFNNIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDLQHVIATAPTHEGVSHVGGDMFD-AIPN--ADAVF   86 (90)
Q Consensus        10 ~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~p~~~~~a~~~~rv~~~~~d~~~-~~p~--~D~i~   86 (90)
                      +.+++.+..  .++...|.|+|||.+.++..+..   ..++.-+|+-.      .++  .+++.|+.. |++.  .|+++
T Consensus        61 d~iI~~l~~--~~~~~viaD~GCGdA~la~~~~~---~~~V~SfDLva------~n~--~Vtacdia~vPL~~~svDv~V  127 (219)
T PF05148_consen   61 DVIIEWLKK--RPKSLVIADFGCGDAKLAKAVPN---KHKVHSFDLVA------PNP--RVTACDIANVPLEDESVDVAV  127 (219)
T ss_dssp             HHHHHHHCT--S-TTS-EEEES-TT-HHHHH--S------EEEEESS-------SST--TEEES-TTS-S--TT-EEEEE
T ss_pred             HHHHHHHHh--cCCCEEEEECCCchHHHHHhccc---CceEEEeeccC------CCC--CEEEecCccCcCCCCceeEEE
Confidence            445555542  33456899999999999966542   46789999611      133  467799966 7765  79988


Q ss_pred             ee
Q 034578           87 MK   88 (90)
Q Consensus        87 l~   88 (90)
                      +.
T Consensus       128 fc  129 (219)
T PF05148_consen  128 FC  129 (219)
T ss_dssp             EE
T ss_pred             EE
Confidence            75

; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.

>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed

Probab=96.89  E-value=0.0059  Score=44.47  Aligned_cols=67  Identities=15%  Similarity=0.130  Sum_probs=49.9

Q ss_pred             CCCCCeEEEecCCchHHHHHHHHHCC-CCeEEEeeh-HHHHHhCCC------CCCeeEEEecCCC---CCCc-ccEEEe
Q 034578           21 FNNIRSMVDVGGGTGTVLAEIVKSYP-HIKGINFDL-QHVIATAPT------HEGVSHVGGDMFD---AIPN-ADAVFM   87 (90)
Q Consensus        21 ~~~~~~vlDvG~G~G~~~~~l~~~~p-~~~~~~~D~-p~~~~~a~~------~~rv~~~~~d~~~---~~p~-~D~i~l   87 (90)
                      ..+..+|||+++|+|.=+..++.... ...+++.|+ +.-++..++      -.++.+...|...   .++. ||.|++
T Consensus       111 ~~pg~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~~~L~~nl~r~G~~nv~v~~~D~~~~~~~~~~~fD~ILv  189 (470)
T PRK11933        111 DNAPQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVKVLHANISRCGVSNVALTHFDGRVFGAALPETFDAILL  189 (470)
T ss_pred             CCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCchhhhhhhchhhcCeEEE
Confidence            34668999999999999999999864 468999998 776655543      2567777777654   2344 898885

>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like

Probab=96.85  E-value=0.0015  Score=43.02  Aligned_cols=67  Identities=13%  Similarity=0.174  Sum_probs=43.9

Q ss_pred             CCCeEEEecCCchHHHHHHHHHCCCCeEEEeeh-HHHHHhCCC-----CCC-eeEEEecCCCCCC--c-ccEEEeecC
Q 034578           23 NIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDL-QHVIATAPT-----HEG-VSHVGGDMFDAIP--N-ADAVFMKVA   90 (90)
Q Consensus        23 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~-----~~r-v~~~~~d~~~~~p--~-~D~i~l~~v   90 (90)
                      +..+.||.|+|-|.++..++... --++..+|. +..++.|++     ..+ .+++...+-+..|  . ||+|++-|+
T Consensus        55 ~~~~alDcGAGIGRVTk~lLl~~-f~~VDlVEp~~~Fl~~a~~~l~~~~~~v~~~~~~gLQ~f~P~~~~YDlIW~QW~  131 (218)
T PF05891_consen   55 KFNRALDCGAGIGRVTKGLLLPV-FDEVDLVEPVEKFLEQAKEYLGKDNPRVGEFYCVGLQDFTPEEGKYDLIWIQWC  131 (218)
T ss_dssp             --SEEEEET-TTTHHHHHTCCCC--SEEEEEES-HHHHHHHHHHTCCGGCCEEEEEES-GGG----TT-EEEEEEES-
T ss_pred             CcceEEecccccchhHHHHHHHh-cCEeEEeccCHHHHHHHHHHhcccCCCcceEEecCHhhccCCCCcEeEEEehHh
Confidence            46799999999999999887654 345788887 888888873     233 4555555544223  3 999998875

; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.

>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases

Probab=96.64  E-value=0.0017  Score=47.42  Aligned_cols=65  Identities=23%  Similarity=0.317  Sum_probs=37.7

Q ss_pred             CCCCeEEEecCCchHHHHHHHHHCCCCeEEEe---eh-HHHHHhCCCCCCeeEEEecCC-C--CCCc--ccEEEeec
Q 034578           22 NNIRSMVDVGGGTGTVLAEIVKSYPHIKGINF---DL-QHVIATAPTHEGVSHVGGDMF-D--AIPN--ADAVFMKV   89 (90)
Q Consensus        22 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~---D~-p~~~~~a~~~~rv~~~~~d~~-~--~~p~--~D~i~l~~   89 (90)
                      ...+.+||+|||+|+++..++++.  +...-+   |- +.-++.|.+++ +--+-+-+- +  |+|.  +|++-+++
T Consensus       116 g~iR~~LDvGcG~aSF~a~l~~r~--V~t~s~a~~d~~~~qvqfaleRG-vpa~~~~~~s~rLPfp~~~fDmvHcsr  189 (506)
T PF03141_consen  116 GGIRTALDVGCGVASFGAYLLERN--VTTMSFAPNDEHEAQVQFALERG-VPAMIGVLGSQRLPFPSNAFDMVHCSR  189 (506)
T ss_pred             CceEEEEeccceeehhHHHHhhCC--ceEEEcccccCCchhhhhhhhcC-cchhhhhhccccccCCccchhhhhccc
Confidence            345789999999999999999984  332222   32 34455554432 111112221 1  5554  78876654

; GO: 0008168 methyltransferase activity

>COG2520 Predicted methyltransferase [General function prediction only]

Probab=96.63  E-value=0.0032  Score=44.10  Aligned_cols=66  Identities=20%  Similarity=0.210  Sum_probs=54.7

Q ss_pred             CCCeEEEecCCchHHHHHHHHHCCCCeEEEeeh-HHHHHhCCC-------CCCeeEEEecCCCCC---CcccEEEeec
Q 034578           23 NIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDL-QHVIATAPT-------HEGVSHVGGDMFDAI---PNADAVFMKV   89 (90)
Q Consensus        23 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~-------~~rv~~~~~d~~~~~---p~~D~i~l~~   89 (90)
                      ...+|+|.=+|-|.+++.+++... .+++++|+ |++++..++       .++++.+.||..+-.   +.||=|+|++
T Consensus       188 ~GE~V~DmFAGVGpfsi~~Ak~g~-~~V~A~diNP~A~~~L~eNi~LN~v~~~v~~i~gD~rev~~~~~~aDrIim~~  264 (341)
T COG2520         188 EGETVLDMFAGVGPFSIPIAKKGR-PKVYAIDINPDAVEYLKENIRLNKVEGRVEPILGDAREVAPELGVADRIIMGL  264 (341)
T ss_pred             CCCEEEEccCCcccchhhhhhcCC-ceEEEEecCHHHHHHHHHHHHhcCccceeeEEeccHHHhhhccccCCEEEeCC
Confidence            478999999999999999999753 34999999 999887766       366999999998832   3499999975

>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2

Probab=96.56  E-value=0.0058  Score=41.68  Aligned_cols=65  Identities=20%  Similarity=0.288  Sum_probs=38.8

Q ss_pred             CCeEEEecCCchHH-HHHHHHH-CCCCeEEEeeh-HHHHHhCCC--------CCCeeEEEecCCC---CCCcccEEEee
Q 034578           24 IRSMVDVGGGTGTV-LAEIVKS-YPHIKGINFDL-QHVIATAPT--------HEGVSHVGGDMFD---AIPNADAVFMK   88 (90)
Q Consensus        24 ~~~vlDvG~G~G~~-~~~l~~~-~p~~~~~~~D~-p~~~~~a~~--------~~rv~~~~~d~~~---~~p~~D~i~l~   88 (90)
                      +.+|+=||+|+=-+ ++.++++ .++.+++++|+ |.+++.+++        ..+++|+.+|..+   ++..||+|++.
T Consensus       121 p~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~~~~~L~~~m~f~~~d~~~~~~dl~~~DvV~lA  199 (276)
T PF03059_consen  121 PSRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELARRLVASDLGLSKRMSFITADVLDVTYDLKEYDVVFLA  199 (276)
T ss_dssp             --EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHHHHH---HH-SSEEEEES-GGGG-GG----SEEEE-
T ss_pred             cceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhcccccCCeEEEecchhccccccccCCEEEEh
Confidence            46999999996554 4455544 37888999999 999988865        4789999999876   24459999875

5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.

>COG1565 Uncharacterized conserved protein [Function unknown]

Probab=96.55  E-value=0.0043  Score=43.74  Aligned_cols=56  Identities=18%  Similarity=0.369  Sum_probs=37.9

Q ss_pred             hhhHHHHHhhcccCCCCCCCeEEEecCCchHHHHHHHHHC----C----CCeEEEeeh-HHHHHh
Q 034578            6 KITMKAFVSHYKVDGFNNIRSMVDVGGGTGTVLAEIVKSY----P----HIKGINFDL-QHVIAT   61 (90)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~----p----~~~~~~~D~-p~~~~~   61 (90)
                      +.++..+++.+..-+.+.+..++++|.|+|.++..+++..    |    .+++..++. |...+.
T Consensus        60 ella~~~~~~wq~~g~p~~~~lvEiGaG~G~l~~DiL~~l~~L~P~~~~~~~~~iiE~s~~L~~~  124 (370)
T COG1565          60 ELLAEQFLQLWQELGRPAPLKLVEIGAGRGTLASDILRTLRRLYPELYEALSYYIIEPSPELRAR  124 (370)
T ss_pred             HHHHHHHHHHHHHhcCCCCceEEEeCCCcChHHHHHHHHHHHhCHHHHhcceEEEEecCHHHHHH
Confidence            3445555655553112345689999999999888877653    4    678899998 665544

>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes

Probab=96.39  E-value=0.0039  Score=43.48  Aligned_cols=64  Identities=19%  Similarity=0.199  Sum_probs=44.0

Q ss_pred             CCCeEEEecCCchHHHHHHHHHCCCCeEEEeeh-HHHHHhCCCC----------------CCeeEEEecCCCC-----C-
Q 034578           23 NIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDL-QHVIATAPTH----------------EGVSHVGGDMFDA-----I-   79 (90)
Q Consensus        23 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~----------------~rv~~~~~d~~~~-----~-   79 (90)
                      +..+|||+|||-|.-+....+. .-...+++|+ +..++.|+++                -...|+.+|.+..     + 
T Consensus        62 ~~~~VLDl~CGkGGDL~Kw~~~-~i~~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~~~~f~a~f~~~D~f~~~l~~~~~  140 (331)
T PF03291_consen   62 PGLTVLDLCCGKGGDLQKWQKA-KIKHYVGIDISEESIEEARERYKQLKKRNNSKQYRFDFIAEFIAADCFSESLREKLP  140 (331)
T ss_dssp             TT-EEEEET-TTTTTHHHHHHT-T-SEEEEEES-HHHHHHHHHHHHHHHTSTT-HTSEECCEEEEEESTTCCSHHHCTSS
T ss_pred             CCCeEEEecCCCchhHHHHHhc-CCCEEEEEeCCHHHHHHHHHHHHHhccccccccccccchhheeccccccchhhhhcc
Confidence            5689999999999988887775 3456899999 8888877541                1356788887751     2 


Q ss_pred             -C--cccEEEe
Q 034578           80 -P--NADAVFM   87 (90)
Q Consensus        80 -p--~~D~i~l   87 (90)
                       +  .+|+|-+
T Consensus       141 ~~~~~FDvVSc  151 (331)
T PF03291_consen  141 PRSRKFDVVSC  151 (331)
T ss_dssp             STTS-EEEEEE
T ss_pred             ccCCCcceeeh
Confidence             2  2788754

The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.

>KOG4589 consensus Cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning]

Probab=96.38  E-value=0.0077  Score=39.32  Aligned_cols=36  Identities=19%  Similarity=0.278  Sum_probs=31.8

Q ss_pred             CCCCCeEEEecCCchHHHHHHHHHC-CCCeEEEeehH
Q 034578           21 FNNIRSMVDVGGGTGTVLAEIVKSY-PHIKGINFDLQ   56 (90)
Q Consensus        21 ~~~~~~vlDvG~G~G~~~~~l~~~~-p~~~~~~~D~p   56 (90)
                      +.+..+|||+|+.+|..+.-..++. |+..+.++|+-
T Consensus        67 l~p~~~VlD~G~APGsWsQVavqr~~p~g~v~gVDll  103 (232)
T KOG4589|consen   67 LRPEDTVLDCGAAPGSWSQVAVQRVNPNGMVLGVDLL  103 (232)
T ss_pred             cCCCCEEEEccCCCChHHHHHHHhhCCCceEEEEeee
Confidence            5667899999999999999888886 99999999973

>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species

Probab=96.32  E-value=0.0069  Score=41.51  Aligned_cols=64  Identities=13%  Similarity=0.176  Sum_probs=49.6

Q ss_pred             CCCeEEEecCCchHHHHHHHHHCCCCeEEEeeh-HHHHHhCCC--------CCCeeEEEecCCCCC------CcccEEEe
Q 034578           23 NIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDL-QHVIATAPT--------HEGVSHVGGDMFDAI------PNADAVFM   87 (90)
Q Consensus        23 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~--------~~rv~~~~~d~~~~~------p~~D~i~l   87 (90)
                      ...+|||+=|=||.++...++. -..+++.+|. ..+++.+++        .++++|+.+|+|+.+      ..||+|++
T Consensus       123 ~gkrvLnlFsYTGgfsv~Aa~g-GA~~v~~VD~S~~al~~a~~N~~lNg~~~~~~~~~~~Dvf~~l~~~~~~~~fD~IIl  201 (286)
T PF10672_consen  123 KGKRVLNLFSYTGGFSVAAAAG-GAKEVVSVDSSKRALEWAKENAALNGLDLDRHRFIQGDVFKFLKRLKKGGRFDLIIL  201 (286)
T ss_dssp             TTCEEEEET-TTTHHHHHHHHT-TESEEEEEES-HHHHHHHHHHHHHTT-CCTCEEEEES-HHHHHHHHHHTT-EEEEEE
T ss_pred             CCCceEEecCCCCHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCHHHHHHHHhcCCCCCEEEE
Confidence            3579999999999999987764 3457999999 889988876        268999999998732      23999987

The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.

>PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein

Probab=96.08  E-value=0.022  Score=37.64  Aligned_cols=76  Identities=11%  Similarity=0.099  Sum_probs=47.9

Q ss_pred             chhhhHHHHHhhcccC-CCCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeehHHHHHhCCCCCCeeEEEecCCC-CCCc
Q 034578            4 TTKITMKAFVSHYKVD-GFNNIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDLQHVIATAPTHEGVSHVGGDMFD-AIPN   81 (90)
Q Consensus         4 ~~~~~~~~~~~~~~~~-~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~p~~~~~a~~~~rv~~~~~d~~~-~~p~   81 (90)
                      .|+.+++++.+..... .....-++|||||-+......   .++-..++.+|+.+.        .-.+.+.||++ |+|.
T Consensus        31 SSK~lv~wL~~~~~~~~~~~~~lrlLEVGals~~N~~s---~~~~fdvt~IDLns~--------~~~I~qqDFm~rplp~   99 (219)
T PF11968_consen   31 SSKWLVEWLKELGVRPKNGRPKLRLLEVGALSTDNACS---TSGWFDVTRIDLNSQ--------HPGILQQDFMERPLPK   99 (219)
T ss_pred             hhHHHHHHhhhhccccccccccceEEeecccCCCCccc---ccCceeeEEeecCCC--------CCCceeeccccCCCCC
Confidence            3555666666655420 011235899999986554433   356677999998221        12456899999 7762


Q ss_pred             -----ccEEEeecC
Q 034578           82 -----ADAVFMKVA   90 (90)
Q Consensus        82 -----~D~i~l~~v   90 (90)
                           ||+|.++-|
T Consensus       100 ~~~e~FdvIs~SLV  113 (219)
T PF11968_consen  100 NESEKFDVISLSLV  113 (219)
T ss_pred             CcccceeEEEEEEE
Confidence                 999998753

>KOG1501 consensus Arginine N-methyltransferase [General function prediction only]

Probab=95.76  E-value=0.015  Score=42.44  Aligned_cols=40  Identities=18%  Similarity=0.199  Sum_probs=33.9

Q ss_pred             CCeEEEecCCchHHHHHHHHHCCCCeEEEeeh-HHHHHhCCC
Q 034578           24 IRSMVDVGGGTGTVLAEIVKSYPHIKGINFDL-QHVIATAPT   64 (90)
Q Consensus        24 ~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~   64 (90)
                      .-.+||+|.|||.++....++. .=++++++. .+|.+.|++
T Consensus        67 kv~vLdigtGTGLLSmMAvrag-aD~vtA~EvfkPM~d~ark  107 (636)
T KOG1501|consen   67 KVFVLDIGTGTGLLSMMAVRAG-ADSVTACEVFKPMVDLARK  107 (636)
T ss_pred             eEEEEEccCCccHHHHHHHHhc-CCeEEeehhhchHHHHHHH
Confidence            3579999999999999999987 445999998 888888875

>KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=95.74  E-value=0.044  Score=36.58  Aligned_cols=65  Identities=12%  Similarity=0.275  Sum_probs=50.0

Q ss_pred             CCCeEEEecCCchHHHHHHHHHCC-CCeEEEeeh-HHHHHhCCC-------CCCeeEEEecCCCCCC--------c-ccE
Q 034578           23 NIRSMVDVGGGTGTVLAEIVKSYP-HIKGINFDL-QHVIATAPT-------HEGVSHVGGDMFDAIP--------N-ADA   84 (90)
Q Consensus        23 ~~~~vlDvG~G~G~~~~~l~~~~p-~~~~~~~D~-p~~~~~a~~-------~~rv~~~~~d~~~~~p--------~-~D~   84 (90)
                      ++++.+|||.=||.=+..++.+.| +.+++.+|+ +...+.+.+       ...++++.++..+.++        + +|.
T Consensus        73 ~ak~~lelGvfTGySaL~~Alalp~dGrv~a~eid~~~~~~~~~~~k~agv~~KI~~i~g~a~esLd~l~~~~~~~tfDf  152 (237)
T KOG1663|consen   73 NAKRTLELGVFTGYSALAVALALPEDGRVVAIEIDADAYEIGLELVKLAGVDHKITFIEGPALESLDELLADGESGTFDF  152 (237)
T ss_pred             CCceEEEEecccCHHHHHHHHhcCCCceEEEEecChHHHHHhHHHHHhccccceeeeeecchhhhHHHHHhcCCCCceeE
Confidence            468999999999999999999986 578999998 666665543       4679999998776321        2 777


Q ss_pred             EEe
Q 034578           85 VFM   87 (90)
Q Consensus        85 i~l   87 (90)
                      +++
T Consensus       153 aFv  155 (237)
T KOG1663|consen  153 AFV  155 (237)
T ss_pred             EEE
Confidence            765

>PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D

Probab=95.59  E-value=0.0036  Score=36.08  Aligned_cols=60  Identities=18%  Similarity=0.266  Sum_probs=19.6

Q ss_pred             EEecCCchHHHHHHHHHCCCC---eEEEeeh-H---HHHHhCCC---CCCeeEEEecCCCC---CC--cccEEEe
Q 034578           28 VDVGGGTGTVLAEIVKSYPHI---KGINFDL-Q---HVIATAPT---HEGVSHVGGDMFDA---IP--NADAVFM   87 (90)
Q Consensus        28 lDvG~G~G~~~~~l~~~~p~~---~~~~~D~-p---~~~~~a~~---~~rv~~~~~d~~~~---~p--~~D~i~l   87 (90)
                      |++|+..|.-+..+++..+..   +++.+|. +   ..-+..++   .++++++.+|..+.   ++  .+|++++
T Consensus         1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~l~~~~~~~~dli~i   75 (106)
T PF13578_consen    1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFPGDEQAQEIIKKAGLSDRVEFIQGDSPDFLPSLPDGPIDLIFI   75 (106)
T ss_dssp             --------------------------EEEESS------------GGG-BTEEEEES-THHHHHHHHH--EEEEEE
T ss_pred             CccccccccccccccccccccccCCEEEEECCCcccccchhhhhcCCCCeEEEEEcCcHHHHHHcCCCCEEEEEE
Confidence            578999999888888876544   6899998 6   33333332   47899999998762   33  3788775

>KOG0822 consensus Protein kinase inhibitor [Cell cycle control, cell division, chromosome partitioning]

Probab=95.53  E-value=0.05  Score=40.49  Aligned_cols=83  Identities=18%  Similarity=0.283  Sum_probs=58.8

Q ss_pred             chhhhHHHHHhhcccCCCCCCCeEEEecCCchHHHHHHHHH----CCCCeEEEeeh-HHHHHhCCC------CCCeeEEE
Q 034578            4 TTKITMKAFVSHYKVDGFNNIRSMVDVGGGTGTVLAEIVKS----YPHIKGINFDL-QHVIATAPT------HEGVSHVG   72 (90)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~----~p~~~~~~~D~-p~~~~~a~~------~~rv~~~~   72 (90)
                      +++.+.+++++..++...+....|+-+|+|-|-+..+..++    ...++.++++. |.++-.-+.      ..||+++.
T Consensus       348 Yq~Ai~~AL~Drvpd~~a~~~tVimvlGaGRGPLv~~~lkaa~~~~RkVklyavEKNPNAivtL~~~n~~~W~~~Vtii~  427 (649)
T KOG0822|consen  348 YQQAILKALLDRVPDESAKTTTVIMVLGAGRGPLVDASLKAAEETDRKVKLYAVEKNPNAIVTLQNRNFECWDNRVTIIS  427 (649)
T ss_pred             HHHHHHHHHHhhCcccccCceEEEEEecCCCccHHHHHHHHHHHhcCceEEEEEecCcchhhhhhhhchhhhcCeeEEEe
Confidence            45666777777766311112567899999999988776654    35678999999 887654432      48999999


Q ss_pred             ecCCCC-CC-c-ccEEE
Q 034578           73 GDMFDA-IP-N-ADAVF   86 (90)
Q Consensus        73 ~d~~~~-~p-~-~D~i~   86 (90)
                      .|+.+. -| + +|+++
T Consensus       428 ~DMR~w~ap~eq~DI~V  444 (649)
T KOG0822|consen  428 SDMRKWNAPREQADIIV  444 (649)
T ss_pred             ccccccCCchhhccchH
Confidence            999883 34 3 88864

>PLN02232 ubiquinone biosynthesis methyltransferase

Probab=95.53  E-value=0.01  Score=36.99  Aligned_cols=39  Identities=28%  Similarity=0.453  Sum_probs=30.1

Q ss_pred             EEeeh-HHHHHhCCCC---------CCeeEEEecCCC-CCCc--ccEEEeec
Q 034578           51 INFDL-QHVIATAPTH---------EGVSHVGGDMFD-AIPN--ADAVFMKV   89 (90)
Q Consensus        51 ~~~D~-p~~~~~a~~~---------~rv~~~~~d~~~-~~p~--~D~i~l~~   89 (90)
                      +++|+ +.|++.|+++         .+++++.+|..+ +++.  +|+|++..
T Consensus         1 ~GvD~S~~ML~~A~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~v~~~~   52 (160)
T PLN02232          1 MGLDFSSEQLAVAATRQSLKARSCYKCIEWIEGDAIDLPFDDCEFDAVTMGY   52 (160)
T ss_pred             CeEcCCHHHHHHHHHhhhcccccCCCceEEEEechhhCCCCCCCeeEEEecc
Confidence            47898 9999987531         369999999977 5553  89998764

>PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) []

Probab=95.51  E-value=0.028  Score=36.86  Aligned_cols=55  Identities=18%  Similarity=0.238  Sum_probs=32.7

Q ss_pred             CCCeEEEecCCch---HHHHHHHHHC-CCCeEEEeeh-HHH-HHhCCCC----CCeeEEEecCCC
Q 034578           23 NIRSMVDVGGGTG---TVLAEIVKSY-PHIKGINFDL-QHV-IATAPTH----EGVSHVGGDMFD   77 (90)
Q Consensus        23 ~~~~vlDvG~G~G---~~~~~l~~~~-p~~~~~~~D~-p~~-~~~a~~~----~rv~~~~~d~~~   77 (90)
                      ++.+|+.+|.-.|   .+...+++.+ ++.+++++|+ ... -..+.+.    +|+++++||-.+
T Consensus        32 kPd~IIE~Gi~~GGSli~~A~ml~~~~~~~~VigiDIdir~~~~~a~e~hp~~~rI~~i~Gds~d   96 (206)
T PF04989_consen   32 KPDLIIETGIAHGGSLIFWASMLELLGGKGKVIGIDIDIRPHNRKAIESHPMSPRITFIQGDSID   96 (206)
T ss_dssp             --SEEEEE--TTSHHHHHHHHHHHHTT---EEEEEES-GTT--S-GGGG----TTEEEEES-SSS
T ss_pred             CCCeEEEEecCCCchHHHHHHHHHHhCCCceEEEEeCCcchhchHHHhhccccCceEEEECCCCC
Confidence            4789999997554   4555666666 8899999998 333 2333333    899999999865

Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E.

>KOG2940 consensus Predicted methyltransferase [General function prediction only]

Probab=95.47  E-value=0.027  Score=38.09  Aligned_cols=64  Identities=19%  Similarity=0.146  Sum_probs=46.0

Q ss_pred             CCCeEEEecCCchHHHHHHHHHCCCCeEEEeeh-HHHHHhCCCC--CC--eeEEEecCCC-CCCc--ccEEEe
Q 034578           23 NIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDL-QHVIATAPTH--EG--VSHVGGDMFD-AIPN--ADAVFM   87 (90)
Q Consensus        23 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~--~r--v~~~~~d~~~-~~p~--~D~i~l   87 (90)
                      .....+|||||-|.+...+..+. --+.+-.|. -.|++.++..  +.  ++...+|=.. ++.+  +|+++-
T Consensus        72 ~fp~a~diGcs~G~v~rhl~~e~-vekli~~DtS~~M~~s~~~~qdp~i~~~~~v~DEE~Ldf~ens~DLiis  143 (325)
T KOG2940|consen   72 SFPTAFDIGCSLGAVKRHLRGEG-VEKLIMMDTSYDMIKSCRDAQDPSIETSYFVGDEEFLDFKENSVDLIIS  143 (325)
T ss_pred             hCcceeecccchhhhhHHHHhcc-hhheeeeecchHHHHHhhccCCCceEEEEEecchhcccccccchhhhhh
Confidence            45789999999999999999986 456889998 7899988763  22  3344455322 3433  788764

>KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism]

Probab=95.45  E-value=0.077  Score=35.50  Aligned_cols=76  Identities=20%  Similarity=0.281  Sum_probs=54.7

Q ss_pred             hhHHHHHhhcccCCCCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeeh-HHHHHhCCC-----CCCeeEEEecCCC---
Q 034578            7 ITMKAFVSHYKVDGFNNIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDL-QHVIATAPT-----HEGVSHVGGDMFD---   77 (90)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~-----~~rv~~~~~d~~~---   77 (90)
                      ...+.+++.+.    .+.++||.||-|-|.+...+.++-|..+ .+++- |.++++.+.     .++|..+.|-+.+   
T Consensus        89 piMha~A~ai~----tkggrvLnVGFGMgIidT~iQe~~p~~H-~IiE~hp~V~krmr~~gw~ek~nViil~g~WeDvl~  163 (271)
T KOG1709|consen   89 PIMHALAEAIS----TKGGRVLNVGFGMGIIDTFIQEAPPDEH-WIIEAHPDVLKRMRDWGWREKENVIILEGRWEDVLN  163 (271)
T ss_pred             HHHHHHHHHHh----hCCceEEEeccchHHHHHHHhhcCCcce-EEEecCHHHHHHHHhcccccccceEEEecchHhhhc
Confidence            34444444443    4678999999999999999888777665 55666 898888765     4788888887765   


Q ss_pred             CCCc--ccEEEe
Q 034578           78 AIPN--ADAVFM   87 (90)
Q Consensus        78 ~~p~--~D~i~l   87 (90)
                      .+|+  ||-|+.
T Consensus       164 ~L~d~~FDGI~y  175 (271)
T KOG1709|consen  164 TLPDKHFDGIYY  175 (271)
T ss_pred             cccccCcceeEe
Confidence            3554  777653

>PF05206 TRM13: Methyltransferase TRM13; InterPro: IPR007871 This entry consists of eukaryotic and bacterial proteins that specifically methylates guanosine-4 in various tRNAs with a Gly(CCG), His or Pro signatures []

Probab=95.44  E-value=0.071  Score=36.11  Aligned_cols=35  Identities=17%  Similarity=0.290  Sum_probs=31.1

Q ss_pred             CCCCCeEEEecCCchHHHHHHHHHC-----CCCeEEEeeh
Q 034578           21 FNNIRSMVDVGGGTGTVLAEIVKSY-----PHIKGINFDL   55 (90)
Q Consensus        21 ~~~~~~vlDvG~G~G~~~~~l~~~~-----p~~~~~~~D~   55 (90)
                      +.+...+++.|||.|.++..+.+..     +..+++.+|.
T Consensus        16 l~~~~~~vEfGaGrg~LS~~v~~~~~~~~~~~~~~~lIDR   55 (259)
T PF05206_consen   16 LNPDSCFVEFGAGRGELSRWVAQALQEDKPSNSRFVLIDR   55 (259)
T ss_pred             CCCCCEEEEECCCchHHHHHHHHHhhhcccCCccEEEEec
Confidence            5667899999999999999999998     5678999996

The alignment contains some conserved cysteines and histidines that might form a zinc binding site.; GO: 0008168 methyltransferase activity, 0008033 tRNA processing

>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]

Probab=95.41  E-value=0.12  Score=36.35  Aligned_cols=65  Identities=20%  Similarity=0.203  Sum_probs=50.5

Q ss_pred             CCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeeh-HHHHHhCCCC------CCeeEEEe-cCCC-CCCc--ccEEEe
Q 034578           21 FNNIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDL-QHVIATAPTH------EGVSHVGG-DMFD-AIPN--ADAVFM   87 (90)
Q Consensus        21 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~------~rv~~~~~-d~~~-~~p~--~D~i~l   87 (90)
                      ......|+|==||||.++++...-  ++++++.|+ ..|++.|+.+      +...+... |... ++++  .|.|..
T Consensus       195 v~~G~~vlDPFcGTGgiLiEagl~--G~~viG~Did~~mv~gak~Nl~~y~i~~~~~~~~~Da~~lpl~~~~vdaIat  270 (347)
T COG1041         195 VKRGELVLDPFCGTGGILIEAGLM--GARVIGSDIDERMVRGAKINLEYYGIEDYPVLKVLDATNLPLRDNSVDAIAT  270 (347)
T ss_pred             cccCCEeecCcCCccHHHHhhhhc--CceEeecchHHHHHhhhhhhhhhhCcCceeEEEecccccCCCCCCccceEEe
Confidence            345579999999999999998775  789999999 8999998874      34445555 7776 6765  787753

>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]

Probab=95.38  E-value=0.051  Score=31.04  Aligned_cols=58  Identities=26%  Similarity=0.378  Sum_probs=37.9

Q ss_pred             EEEecCCchHHHHHHHHHCCC-CeEEEeeh-HHHHHhCCCC---CC---eeEEEecCCC---CCC---cccEE
Q 034578           27 MVDVGGGTGTVLAEIVKSYPH-IKGINFDL-QHVIATAPTH---EG---VSHVGGDMFD---AIP---NADAV   85 (90)
Q Consensus        27 vlDvG~G~G~~~~~l~~~~p~-~~~~~~D~-p~~~~~a~~~---~r---v~~~~~d~~~---~~p---~~D~i   85 (90)
                      ++|+|||+|... .+....+. ..++++|. +.++..++..   ..   +.+..+|...   ++.   .+|++
T Consensus        52 ~ld~~~g~g~~~-~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~  123 (257)
T COG0500          52 VLDIGCGTGRLA-LLARLGGRGAYVVGVDLSPEMLALARARAEGAGLGLVDFVVADALGGVLPFEDSASFDLV  123 (257)
T ss_pred             eEEecCCcCHHH-HHHHhCCCCceEEEEeCCHHHHHHHHhhhhhcCCCceEEEEeccccCCCCCCCCCceeEE
Confidence            999999999977 44444333 47888998 7777664331   11   5777777664   333   26776

>COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]

Probab=95.28  E-value=0.1  Score=35.05  Aligned_cols=60  Identities=10%  Similarity=0.077  Sum_probs=40.0

Q ss_pred             HHHHhhcccCCCCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeeh--HHHHHhCCCCCCeeEEE
Q 034578           10 KAFVSHYKVDGFNNIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDL--QHVIATAPTHEGVSHVG   72 (90)
Q Consensus        10 ~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~--p~~~~~a~~~~rv~~~~   72 (90)
                      ...++.+.  ...+...+||+|..||.++.-++++- ..++.++|.  .+..-.-|..+|+..+.
T Consensus        68 ~~ale~F~--l~~k~kv~LDiGsSTGGFTd~lLq~g-Ak~VyavDVG~~Ql~~kLR~d~rV~~~E  129 (245)
T COG1189          68 EKALEEFE--LDVKGKVVLDIGSSTGGFTDVLLQRG-AKHVYAVDVGYGQLHWKLRNDPRVIVLE  129 (245)
T ss_pred             HHHHHhcC--cCCCCCEEEEecCCCccHHHHHHHcC-CcEEEEEEccCCccCHhHhcCCcEEEEe
Confidence            34455555  23467899999999999999999863 456889995  33333334455554444

>KOG2651 consensus rRNA adenine N-6-methyltransferase [RNA processing and modification]

Probab=95.19  E-value=0.037  Score=39.67  Aligned_cols=41  Identities=27%  Similarity=0.436  Sum_probs=33.3

Q ss_pred             CCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeeh-HHHHHhC
Q 034578           21 FNNIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDL-QHVIATA   62 (90)
Q Consensus        21 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a   62 (90)
                      +-+...++|+|.|.|+++..+.-.+ ++++.++|- ....++|
T Consensus       151 f~gi~~vvD~GaG~G~LSr~lSl~y-~lsV~aIegsq~~~~ra  192 (476)
T KOG2651|consen  151 FTGIDQVVDVGAGQGHLSRFLSLGY-GLSVKAIEGSQRLVERA  192 (476)
T ss_pred             hcCCCeeEEcCCCchHHHHHHhhcc-CceEEEeccchHHHHHH
Confidence            5567899999999999999998877 688999996 4444444

>PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ]

Probab=95.16  E-value=0.23  Score=33.11  Aligned_cols=83  Identities=11%  Similarity=0.141  Sum_probs=56.0

Q ss_pred             hhhhHHHHHhhcccCCCCCCCeEEEecCCchHHHHHHHHHC-CCCeEEEeeh-HH----HHHhCCCCCCeeEEEecCCCC
Q 034578            5 TKITMKAFVSHYKVDGFNNIRSMVDVGGGTGTVLAEIVKSY-PHIKGINFDL-QH----VIATAPTHEGVSHVGGDMFDA   78 (90)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~-p~~~~~~~D~-p~----~~~~a~~~~rv~~~~~d~~~~   78 (90)
                      ...++..++..++.-.+.+..+||-+|..+|.....+..-. |.-.+.+++. |.    .+..|+++.|+--+-.|...|
T Consensus        55 RSKLaAai~~Gl~~~~ik~gskVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~r~~rdL~~la~~R~NIiPIl~DAr~P  134 (229)
T PF01269_consen   55 RSKLAAAILKGLENIPIKPGSKVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSPRSMRDLLNLAKKRPNIIPILEDARHP  134 (229)
T ss_dssp             T-HHHHHHHTT-S--S--TT-EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHSTTEEEEES-TTSG
T ss_pred             hhHHHHHHHcCccccCCCCCCEEEEecccCCCccchhhhccCCCCcEEEEEecchhHHHHHHHhccCCceeeeeccCCCh
Confidence            34567777766652115667899999999999999999885 5889999998 64    466677778887777887763


Q ss_pred             -----C-CcccEEEe
Q 034578           79 -----I-PNADAVFM   87 (90)
Q Consensus        79 -----~-p~~D~i~l   87 (90)
                           + +..|+|+.
T Consensus       135 ~~Y~~lv~~VDvI~~  149 (229)
T PF01269_consen  135 EKYRMLVEMVDVIFQ  149 (229)
T ss_dssp             GGGTTTS--EEEEEE
T ss_pred             HHhhcccccccEEEe
Confidence                 2 23687764

It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A ....

>KOG1331 consensus Predicted methyltransferase [General function prediction only]

Probab=95.03  E-value=0.025  Score=38.85  Aligned_cols=60  Identities=25%  Similarity=0.279  Sum_probs=44.1

Q ss_pred             CCCeEEEecCCchHHHHHHHHHCCCCeEEEeeh-HHHHHhCCCCCCeeEEEecCCC-CCCc--ccEEE
Q 034578           23 NIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDL-QHVIATAPTHEGVSHVGGDMFD-AIPN--ADAVF   86 (90)
Q Consensus        23 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~~rv~~~~~d~~~-~~p~--~D~i~   86 (90)
                      ....++|+|||.|-+..-    +|.+..++.|+ ...+..++..+.......|... +.++  +|..+
T Consensus        45 ~gsv~~d~gCGngky~~~----~p~~~~ig~D~c~~l~~~ak~~~~~~~~~ad~l~~p~~~~s~d~~l  108 (293)
T KOG1331|consen   45 TGSVGLDVGCGNGKYLGV----NPLCLIIGCDLCTGLLGGAKRSGGDNVCRADALKLPFREESFDAAL  108 (293)
T ss_pred             CcceeeecccCCcccCcC----CCcceeeecchhhhhccccccCCCceeehhhhhcCCCCCCccccch
Confidence            357899999999987654    58889999999 7788887775543555678777 4433  66654

>COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]

Probab=94.91  E-value=0.015  Score=41.32  Aligned_cols=65  Identities=23%  Similarity=0.400  Sum_probs=41.6

Q ss_pred             CCCeEEEecCCchHHHHHHHHHCCCCe-EEEeeh-HHHHHhC---CC---CCCeeEEEecCCC---CCCcccEEEe
Q 034578           23 NIRSMVDVGGGTGTVLAEIVKSYPHIK-GINFDL-QHVIATA---PT---HEGVSHVGGDMFD---AIPNADAVFM   87 (90)
Q Consensus        23 ~~~~vlDvG~G~G~~~~~l~~~~p~~~-~~~~D~-p~~~~~a---~~---~~rv~~~~~d~~~---~~p~~D~i~l   87 (90)
                      .+++|||+|.|+|.-+.++-.-||.++ ++.++. |..-+..   .+   ..+.-+-..|+..   ++|.+|.|.+
T Consensus       113 apqsiLDvG~GPgtgl~A~n~i~Pdl~sa~ile~sp~lrkV~~tl~~nv~t~~td~r~s~vt~dRl~lp~ad~ytl  188 (484)
T COG5459         113 APQSILDVGAGPGTGLWALNDIWPDLKSAVILEASPALRKVGDTLAENVSTEKTDWRASDVTEDRLSLPAADLYTL  188 (484)
T ss_pred             CcchhhccCCCCchhhhhhcccCCCchhhhhhccCHHHHHHHHHHHhhcccccCCCCCCccchhccCCCccceeeh
Confidence            357899999999999999999999986 666776 4432221   11   1222333445544   4565666655

>KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification]

Probab=94.90  E-value=0.12  Score=35.53  Aligned_cols=54  Identities=19%  Similarity=0.240  Sum_probs=36.6

Q ss_pred             CCCCeEEEecCCchHHHHHHHHHCCCCeEEEeehHHHHHhCCCCCCeeEEEecCCC-CCCc--ccEEEee
Q 034578           22 NNIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDLQHVIATAPTHEGVSHVGGDMFD-AIPN--ADAVFMK   88 (90)
Q Consensus        22 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~p~~~~~a~~~~rv~~~~~d~~~-~~p~--~D~i~l~   88 (90)
                      +....|-|+|||.+.++..     ..-++..+|+-.        .+-.++..|+.. |++.  .|++++.
T Consensus       179 ~~~~vIaD~GCGEakiA~~-----~~~kV~SfDL~a--------~~~~V~~cDm~~vPl~d~svDvaV~C  235 (325)
T KOG3045|consen  179 PKNIVIADFGCGEAKIASS-----ERHKVHSFDLVA--------VNERVIACDMRNVPLEDESVDVAVFC  235 (325)
T ss_pred             cCceEEEecccchhhhhhc-----cccceeeeeeec--------CCCceeeccccCCcCccCcccEEEee
Confidence            3457899999999998871     224577788522        133456788877 6654  7887764

>PF02636 Methyltransf_28: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR003788 This entry describes proteins of unknown function

Probab=94.82  E-value=0.059  Score=35.90  Aligned_cols=37  Identities=16%  Similarity=0.338  Sum_probs=27.3

Q ss_pred             CCeEEEecCCchHHHHHHHHHCCC--------CeEEEeeh-HHHHH
Q 034578           24 IRSMVDVGGGTGTVLAEIVKSYPH--------IKGINFDL-QHVIA   60 (90)
Q Consensus        24 ~~~vlDvG~G~G~~~~~l~~~~p~--------~~~~~~D~-p~~~~   60 (90)
                      +-+|+++|+|+|.++..+++....        ++.+.+|. |...+
T Consensus        19 ~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~~~y~ivE~Sp~L~~   64 (252)
T PF02636_consen   19 PLRIVEIGAGRGTLARDILRYLRKFSPEVYKRLRYHIVEISPYLRE   64 (252)
T ss_dssp             -EEEEEES-TTSHHHHHHHHHHCCTTHHHHTTCEEEEE-TTCCCHH
T ss_pred             CcEEEEECCCchHHHHHHHHHHHHhChhhhhcceEEEEcCCHHHHH
Confidence            469999999999999998876543        48999998 66544

; PDB: 4F3N_A 1ZKD_B.

>KOG3924 consensus Putative protein methyltransferase involved in meiosis and transcriptional silencing (Dot1) [Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=94.81  E-value=0.034  Score=39.81  Aligned_cols=70  Identities=16%  Similarity=0.348  Sum_probs=50.2

Q ss_pred             CCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeeh-HHHHHhC--C-------------CCCCeeEEEecCCCC------
Q 034578           21 FNNIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDL-QHVIATA--P-------------THEGVSHVGGDMFDA------   78 (90)
Q Consensus        21 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a--~-------------~~~rv~~~~~d~~~~------   78 (90)
                      ..+.....|+|+|-|.+...++......+-+|+++ +..-+.+  +             +...++.+.++|..+      
T Consensus       190 ~g~~D~F~DLGSGVGqlv~~~aa~a~~k~svG~eim~~pS~~a~~~~~~~kk~~k~fGk~~~~~~~i~gsf~~~~~v~eI  269 (419)
T KOG3924|consen  190 LGPADVFMDLGSGVGQLVCFVAAYAGCKKSVGFEIMDKPSQCAELNKEEFKKLMKHFGKKPNKIETIHGSFLDPKRVTEI  269 (419)
T ss_pred             cCCCCcccCCCcccchhhHHHHHhhccccccceeeecCcHHHHHHHHHHHHHHHHHhCCCcCceeecccccCCHHHHHHH
Confidence            55678899999999999988888766666777775 3222211  1             125589999999873      


Q ss_pred             CCcccEEEeecC
Q 034578           79 IPNADAVFMKVA   90 (90)
Q Consensus        79 ~p~~D~i~l~~v   90 (90)
                      .+++++|+++++
T Consensus       270 ~~eatvi~vNN~  281 (419)
T KOG3924|consen  270 QTEATVIFVNNV  281 (419)
T ss_pred             hhcceEEEEecc
Confidence            245899998875

>PF11599 AviRa: RRNA methyltransferase AviRa; InterPro: IPR024268 This family of proteins includes the methyltransferase AviRa from Streptomyces viridochromogenes

Probab=94.61  E-value=0.05  Score=36.21  Aligned_cols=43  Identities=14%  Similarity=0.159  Sum_probs=32.6

Q ss_pred             CCCCeEEEecCCchHHHHHHHHHCCC-C-eEEEeeh-HHHHHhCCC
Q 034578           22 NNIRSMVDVGGGTGTVLAEIVKSYPH-I-KGINFDL-QHVIATAPT   64 (90)
Q Consensus        22 ~~~~~vlDvG~G~G~~~~~l~~~~p~-~-~~~~~D~-p~~~~~a~~   64 (90)
                      ..+-++.|=+||+|+++.-+.--++. + .+++.|+ +.+++.|++
T Consensus        50 ~~p~tLyDPCCG~gyLLTVlGLLh~~~l~~v~aSDId~~aL~lA~k   95 (246)
T PF11599_consen   50 KGPYTLYDPCCGSGYLLTVLGLLHRRRLRRVYASDIDEDALELARK   95 (246)
T ss_dssp             -S-EEEEETT-TTSHHHHHHHHHTGGGEEEEEEEES-HHHHHHHHH
T ss_pred             CCCeeeeccCCCccHHHHHHHHhhhHHHHhHhcccCCHHHHHHHHH
Confidence            46679999999999998877766643 3 4888999 999988864

This protein mediates the resistance to the antibiotic avilamycin. AviRa methylates a specific guanine base within the peptidyl-transferase loop of the 23S ribosomal RNA [].; PDB: 1O9H_A 1O9G_A.

>PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised

Probab=94.36  E-value=0.33  Score=32.65  Aligned_cols=64  Identities=13%  Similarity=0.134  Sum_probs=38.1

Q ss_pred             CCCeEEEecCCchHHHHHHHHHCCCCeEEEeeh-HHHHHhCCC-----CCCeeEEEecCCCCCCc-----ccEEEe
Q 034578           23 NIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDL-QHVIATAPT-----HEGVSHVGGDMFDAIPN-----ADAVFM   87 (90)
Q Consensus        23 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~-----~~rv~~~~~d~~~~~p~-----~D~i~l   87 (90)
                      ..++||=||= .=..+++++...+..+++++|+ +..++..++     .-+++.+..|+.+++|+     ||+++.
T Consensus        44 ~gk~il~lGD-DDLtSlA~al~~~~~~I~VvDiDeRll~fI~~~a~~~gl~i~~~~~DlR~~LP~~~~~~fD~f~T  118 (243)
T PF01861_consen   44 EGKRILFLGD-DDLTSLALALTGLPKRITVVDIDERLLDFINRVAEEEGLPIEAVHYDLRDPLPEELRGKFDVFFT  118 (243)
T ss_dssp             TT-EEEEES--TT-HHHHHHHHT--SEEEEE-S-HHHHHHHHHHHHHHT--EEEE---TTS---TTTSS-BSEEEE
T ss_pred             cCCEEEEEcC-CcHHHHHHHhhCCCCeEEEEEcCHHHHHHHHHHHHHcCCceEEEEecccccCCHHHhcCCCEEEe
Confidence            3578999994 4456777777778889999999 777765543     34599999999998773     799874

All the members are 350-400 amino acids long.; PDB: 2QM3_A.

>KOG2793 consensus Putative N2,N2-dimethylguanosine tRNA methyltransferase [RNA processing and modification]

Probab=94.13  E-value=0.24  Score=33.43  Aligned_cols=66  Identities=20%  Similarity=0.130  Sum_probs=40.6

Q ss_pred             CCCeEEEecCCchHHHHHHHHHCCCCeEEEeehHHHHHhCCC------------CCCeeEEEecCCCC------CCc-cc
Q 034578           23 NIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDLQHVIATAPT------------HEGVSHVGGDMFDA------IPN-AD   83 (90)
Q Consensus        23 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~p~~~~~a~~------------~~rv~~~~~d~~~~------~p~-~D   83 (90)
                      ...++|.+|+|+|..++..+. ....+++.-|.|..++.-+.            .+.+....-++-.+      .|. +|
T Consensus        86 ~~~~vlELGsGtglvG~~aa~-~~~~~v~ltD~~~~~~~L~~~~~~~~~~l~~~g~~v~v~~L~Wg~~~~~~~~~~~~~D  164 (248)
T KOG2793|consen   86 KYINVLELGSGTGLVGILAAL-LLGAEVVLTDLPKVVENLKFNRDKNNIALNQLGGSVIVAILVWGNALDVSFRLPNPFD  164 (248)
T ss_pred             cceeEEEecCCccHHHHHHHH-HhcceeccCCchhhHHHHHHhhhhhhhhhhhcCCceeEEEEecCCcccHhhccCCccc
Confidence            356799999999966665555 45778888887655443221            12455544444431      233 68


Q ss_pred             EEEeec
Q 034578           84 AVFMKV   89 (90)
Q Consensus        84 ~i~l~~   89 (90)
                      +++.+.
T Consensus       165 lilasD  170 (248)
T KOG2793|consen  165 LILASD  170 (248)
T ss_pred             EEEEee
Confidence            887764

>cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology

Probab=94.02  E-value=0.13  Score=34.81  Aligned_cols=61  Identities=16%  Similarity=0.184  Sum_probs=43.0

Q ss_pred             eEEEecCCchHHHHHHHHHCCCCe-EEEeeh-HHHHHhCCCCCCeeEEEecCCC-C----CCcccEEEee
Q 034578           26 SMVDVGGGTGTVLAEIVKSYPHIK-GINFDL-QHVIATAPTHEGVSHVGGDMFD-A----IPNADAVFMK   88 (90)
Q Consensus        26 ~vlDvG~G~G~~~~~l~~~~p~~~-~~~~D~-p~~~~~a~~~~rv~~~~~d~~~-~----~p~~D~i~l~   88 (90)
                      +++|+-||.|.+...+.+..  .+ +.++|+ +.+++.-+.+-.-.++.+|+.+ .    .+.+|+++.+
T Consensus         2 ~v~dLFsG~Gg~~~gl~~~G--~~~v~a~e~~~~a~~~~~~N~~~~~~~~Di~~~~~~~~~~~~D~l~~g   69 (275)
T cd00315           2 RVIDLFAGIGGFRLGLEKAG--FEIVAANEIDKSAAETYEANFPNKLIEGDITKIDEKDFIPDIDLLTGG   69 (275)
T ss_pred             cEEEEccCcchHHHHHHHcC--CEEEEEEeCCHHHHHHHHHhCCCCCccCccccCchhhcCCCCCEEEeC
Confidence            58999999999999998874  44 677998 8887766554212255677765 1    2348988765

Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability.

>PF04445 SAM_MT: Putative SAM-dependent methyltransferase; InterPro: IPR007536 This family of proteins is functionally uncharacterised

Probab=93.40  E-value=0.13  Score=34.34  Aligned_cols=73  Identities=15%  Similarity=0.222  Sum_probs=43.8

Q ss_pred             HHHHhhcccCCCCCC--CeEEEecCCchHHHHHHHHHCCCCeEEEeeh-HHHHHhC-------CC--------CCCeeEE
Q 034578           10 KAFVSHYKVDGFNNI--RSMVDVGGGTGTVLAEIVKSYPHIKGINFDL-QHVIATA-------PT--------HEGVSHV   71 (90)
Q Consensus        10 ~~~~~~~~~~~~~~~--~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a-------~~--------~~rv~~~   71 (90)
                      +.+++...   +.+.  .+|||.=+|-|.=+.-++..  +.++++++. |.+....       ..        ..|++++
T Consensus        63 ~~l~kA~G---lk~~~~~~VLDaTaGLG~Da~vlA~~--G~~V~~lErspvia~Ll~dGL~r~~~~~~~~~~~~~ri~l~  137 (234)
T PF04445_consen   63 DPLAKAVG---LKPGMRPSVLDATAGLGRDAFVLASL--GCKVTGLERSPVIAALLKDGLKRAQQDPELLAEAMRRIQLI  137 (234)
T ss_dssp             SHHHHHTT----BTTB---EEETT-TTSHHHHHHHHH--T--EEEEE--HHHHHHHHHHHHHHHHSTTTHHHHHHHEEEE
T ss_pred             cHHHHHhC---CCCCCCCEEEECCCcchHHHHHHHcc--CCeEEEEECCHHHHHHHHHHHHHHHhCcHhHHHHHhCCEEE
Confidence            44555554   3322  48999999999988888764  678999998 6533222       11        1589999


Q ss_pred             EecCCCCC--C--cccEEEe
Q 034578           72 GGDMFDAI--P--NADAVFM   87 (90)
Q Consensus        72 ~~d~~~~~--p--~~D~i~l   87 (90)
                      .+|..+.+  +  .+|+|++
T Consensus       138 ~~d~~~~L~~~~~s~DVVY~  157 (234)
T PF04445_consen  138 HGDALEYLRQPDNSFDVVYF  157 (234)
T ss_dssp             ES-CCCHCCCHSS--SEEEE
T ss_pred             cCCHHHHHhhcCCCCCEEEE
Confidence            99988843  2  2899987

; PDB: 2PGX_A 2OYR_A 2R6Z_A 2PKW_A.

>KOG1562 consensus Spermidine synthase [Amino acid transport and metabolism]

Probab=93.38  E-value=0.035  Score=38.52  Aligned_cols=65  Identities=26%  Similarity=0.425  Sum_probs=50.1

Q ss_pred             CCCCeEEEecCCchHHHHHHHHHCCCC-eEEEeeh-HHHHHhCCC----------CCCeeEEEecCCC---CCC--cccE
Q 034578           22 NNIRSMVDVGGGTGTVLAEIVKSYPHI-KGINFDL-QHVIATAPT----------HEGVSHVGGDMFD---AIP--NADA   84 (90)
Q Consensus        22 ~~~~~vlDvG~G~G~~~~~l~~~~p~~-~~~~~D~-p~~~~~a~~----------~~rv~~~~~d~~~---~~p--~~D~   84 (90)
                      ..+..++-||+|.|-+.+...++ +.+ .+..+|+ ..+++..++          .+++.++.||-+.   ..+  .+|+
T Consensus       120 ~npkkvlVVgggDggvlrevikH-~~ve~i~~~eiD~~Vie~sk~y~p~la~gy~~~~v~l~iGDG~~fl~~~~~~~~dV  198 (337)
T KOG1562|consen  120 PNPKKVLVVGGGDGGVLREVIKH-KSVENILLCEIDENVIESSKQYLPTLACGYEGKKVKLLIGDGFLFLEDLKENPFDV  198 (337)
T ss_pred             CCCCeEEEEecCCccceeeeecc-ccccceeeehhhHHHHHHHHHHhHHHhcccCCCceEEEeccHHHHHHHhccCCceE
Confidence            35789999999999999999997 554 4677887 666666554          4889999999665   333  3899


Q ss_pred             EEe
Q 034578           85 VFM   87 (90)
Q Consensus        85 i~l   87 (90)
                      |+.
T Consensus       199 ii~  201 (337)
T KOG1562|consen  199 IIT  201 (337)
T ss_pred             EEE
Confidence            885

>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases

Probab=93.37  E-value=0.16  Score=32.34  Aligned_cols=51  Identities=14%  Similarity=0.126  Sum_probs=37.5

Q ss_pred             hhHHHHHhhcccCCCCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeeh-HHHHHhCC
Q 034578            7 ITMKAFVSHYKVDGFNNIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDL-QHVIATAP   63 (90)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~   63 (90)
                      .+.+.++..+.    .+...|||-=||+|..+.+..+.  +-+.+++|+ |..++.|+
T Consensus       179 ~l~~~lI~~~t----~~gdiVlDpF~GSGTT~~aa~~l--~R~~ig~E~~~~y~~~a~  230 (231)
T PF01555_consen  179 ELIERLIKAST----NPGDIVLDPFAGSGTTAVAAEEL--GRRYIGIEIDEEYCEIAK  230 (231)
T ss_dssp             HHHHHHHHHHS-----TT-EEEETT-TTTHHHHHHHHT--T-EEEEEESSHHHHHHHH
T ss_pred             HHHHHHHHhhh----ccceeeehhhhccChHHHHHHHc--CCeEEEEeCCHHHHHHhc
Confidence            45666776665    34689999999999999998887  445999999 88877664

In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....

>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]

Probab=93.34  E-value=0.64  Score=32.76  Aligned_cols=67  Identities=12%  Similarity=0.150  Sum_probs=47.1

Q ss_pred             CCCCCeEEEecCCchHHHHHHHHHCCC--CeEEEeeh-HHHHHhCCC------CCCeeEEEecCCC---CCC--c-ccEE
Q 034578           21 FNNIRSMVDVGGGTGTVLAEIVKSYPH--IKGINFDL-QHVIATAPT------HEGVSHVGGDMFD---AIP--N-ADAV   85 (90)
Q Consensus        21 ~~~~~~vlDvG~G~G~~~~~l~~~~p~--~~~~~~D~-p~~~~~a~~------~~rv~~~~~d~~~---~~p--~-~D~i   85 (90)
                      ..+..+|||.+.+.|.=+..++..-++  ..++++|. +.-++..++      ..++..+..|...   ..+  . ||.|
T Consensus       154 p~pge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~l~~nl~RlG~~nv~~~~~d~~~~~~~~~~~~~fD~i  233 (355)
T COG0144         154 PKPGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLRENLKRLGVRNVIVVNKDARRLAELLPGGEKFDRI  233 (355)
T ss_pred             CCCcCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHHHHHHHHHHHcCCCceEEEecccccccccccccCcCcEE
Confidence            556799999999999988888888765  66799998 655444433      2446777777543   122  2 7888


Q ss_pred             Ee
Q 034578           86 FM   87 (90)
Q Consensus        86 ~l   87 (90)
                      ++
T Consensus       234 Ll  235 (355)
T COG0144         234 LL  235 (355)
T ss_pred             EE
Confidence            75

>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]

Probab=92.72  E-value=0.17  Score=35.58  Aligned_cols=65  Identities=17%  Similarity=0.211  Sum_probs=45.5

Q ss_pred             CCCCeEEEecC-CchHHHHHHHHHCCCCeEEEeeh-HHHHHhCCCCCCeeEEEec---CCCCCCc-ccEEEe
Q 034578           22 NNIRSMVDVGG-GTGTVLAEIVKSYPHIKGINFDL-QHVIATAPTHEGVSHVGGD---MFDAIPN-ADAVFM   87 (90)
Q Consensus        22 ~~~~~vlDvG~-G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~~rv~~~~~d---~~~~~p~-~D~i~l   87 (90)
                      .+.++|+=+|. |-|++++.++++.- ++++++|. ++-.+.|++-..-.++...   +.+.+.+ +|+++-
T Consensus       165 ~pG~~V~I~G~GGlGh~avQ~Aka~g-a~Via~~~~~~K~e~a~~lGAd~~i~~~~~~~~~~~~~~~d~ii~  235 (339)
T COG1064         165 KPGKWVAVVGAGGLGHMAVQYAKAMG-AEVIAITRSEEKLELAKKLGADHVINSSDSDALEAVKEIADAIID  235 (339)
T ss_pred             CCCCEEEEECCcHHHHHHHHHHHHcC-CeEEEEeCChHHHHHHHHhCCcEEEEcCCchhhHHhHhhCcEEEE
Confidence            34566666665 57789999999775 99999999 8888888876555555543   3333333 788764

>PF04072 LCM: Leucine carboxyl methyltransferase; InterPro: IPR007213 This entry represents a group of leucine carboxymethyltransferases which methylate the carboxyl group of leucine residues to form alpha-leucine ester residues

Probab=92.50  E-value=0.68  Score=29.36  Aligned_cols=55  Identities=24%  Similarity=0.287  Sum_probs=39.9

Q ss_pred             CCCeEEEecCCchHHHHHHHHHCCCCeEEEeehHHHHHhCCC----C-----CCeeEEEecCCC
Q 034578           23 NIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDLQHVIATAPT----H-----EGVSHVGGDMFD   77 (90)
Q Consensus        23 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~p~~~~~a~~----~-----~rv~~~~~d~~~   77 (90)
                      +...|+-+|||-=.....+....++.+..-+|+|++++.-++    .     .+.+++..|+.+
T Consensus        78 ~~~qvV~LGaGlDTr~~Rl~~~~~~~~~~evD~p~v~~~K~~~l~~~~~~~~~~~~~v~~Dl~~  141 (183)
T PF04072_consen   78 GARQVVNLGAGLDTRAYRLDNPAGGVRWFEVDLPEVIALKRRLLPESGARPPANYRYVPADLRD  141 (183)
T ss_dssp             TESEEEEET-TT--HHHHHHHTTTTEEEEEEE-HHHHHHHHHHHHHTHHHHHEESSEEES-TTS
T ss_pred             CCcEEEEcCCCCCchHHHhhccccceEEEEeCCHHHHHHHHHHHHhCcccCCcceeEEeccccc
Confidence            445899999999999999999888999999999988775433    1     236789999986

It includes LCTM1 which regulates the activity of serine/threonine phosphatase 2A (PP2A) through methylation of the C-terminal leucine residue of the catalytic subunit of PP2A [, , ]. This affects the heteromultimeric composition of PP2A which in turn affects protein recognition and substrate specificity. Like many other methyltransferases LCTM1 uses S-adenosylmethionine (SAM) as the methyl donor. LCTM1 contains the common SAM-dependent methyltransferase core fold, with various insertions and additions creating a specific PP2A binding site []. This entry also contains LCTM2, a homologue of LCTM1 which is not necessary for PP2A methylation and whose function is not clear.; GO: 0008168 methyltransferase activity; PDB: 2UYQ_A 2CKD_B 2UYO_A 2ZZK_B 2ZWA_B 2ZW9_B 1RJE_C 2OB2_B 1RJF_A 1RJD_A ....

>COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis]

Probab=92.26  E-value=1.3  Score=29.41  Aligned_cols=72  Identities=10%  Similarity=0.090  Sum_probs=53.0

Q ss_pred             hhhHHHHHhhcccCCCCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeeh-HH----HHHhCCCCCCeeEEEecCCC
Q 034578            6 KITMKAFVSHYKVDGFNNIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDL-QH----VIATAPTHEGVSHVGGDMFD   77 (90)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~----~~~~a~~~~rv~~~~~d~~~   77 (90)
                      ..++..++..++.--+++..+||=+|..+|.....+..-.+.-.+.+++. |.    .+..+++++|+-=+-+|...
T Consensus        59 SKLaAaIl~Gl~~~pi~~g~~VLYLGAasGTTvSHVSDIv~~G~iYaVEfs~R~~reLl~~a~~R~Ni~PIL~DA~~  135 (231)
T COG1889          59 SKLAAAILKGLKNFPIKEGSKVLYLGAASGTTVSHVSDIVGEGRIYAVEFSPRPMRELLDVAEKRPNIIPILEDARK  135 (231)
T ss_pred             hHHHHHHHcCcccCCcCCCCEEEEeeccCCCcHhHHHhccCCCcEEEEEecchhHHHHHHHHHhCCCceeeecccCC
Confidence            35677777766521156778999999999999999999988888899997 54    35566666666656666654

>KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification]

Probab=91.77  E-value=0.15  Score=36.00  Aligned_cols=55  Identities=22%  Similarity=0.260  Sum_probs=41.6

Q ss_pred             CCCCeEEEecCCchHHHHHHHHHCCCCeEEEeeh-HHHHHhCCCC--------C----CeeEEEecCCC
Q 034578           22 NNIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDL-QHVIATAPTH--------E----GVSHVGGDMFD   77 (90)
Q Consensus        22 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~--------~----rv~~~~~d~~~   77 (90)
                      ++...++|+|||-|.-++...++. --..+++|+ +..+++|+++        .    .+.|+.+|-+.
T Consensus       116 ~~~~~~~~LgCGKGGDLlKw~kAg-I~~~igiDIAevSI~qa~~RYrdm~~r~~~~~f~a~f~~~Dc~~  183 (389)
T KOG1975|consen  116 KRGDDVLDLGCGKGGDLLKWDKAG-IGEYIGIDIAEVSINQARKRYRDMKNRFKKFIFTAVFIAADCFK  183 (389)
T ss_pred             ccccccceeccCCcccHhHhhhhc-ccceEeeehhhccHHHHHHHHHHHHhhhhcccceeEEEEeccch
Confidence            356789999999999888877763 235899999 7788888761        2    36788888764

>PF03686 UPF0146: Uncharacterised protein family (UPF0146); InterPro: IPR005353 The function of this family of proteins is unknown

Probab=91.74  E-value=0.64  Score=28.32  Aligned_cols=57  Identities=30%  Similarity=0.458  Sum_probs=31.9

Q ss_pred             CCeEEEecCCchH-HHHHHHHHCCCCeEEEeeh-HHHHHhCCCCCCeeEEEecCCCCCC----cccEEEe
Q 034578           24 IRSMVDVGGGTGT-VLAEIVKSYPHIKGINFDL-QHVIATAPTHEGVSHVGGDMFDAIP----NADAVFM   87 (90)
Q Consensus        24 ~~~vlDvG~G~G~-~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~~rv~~~~~d~~~~~p----~~D~i~l   87 (90)
                      ..++++||-|.=. .+..|.++  +..+++.|+ |.   .++  ..+.++.-|.|+|-.    .+|+|+.
T Consensus        14 ~~kiVEVGiG~~~~vA~~L~~~--G~dV~~tDi~~~---~a~--~g~~~v~DDif~P~l~iY~~a~lIYS   76 (127)
T PF03686_consen   14 YGKIVEVGIGFNPEVAKKLKER--GFDVIATDINPR---KAP--EGVNFVVDDIFNPNLEIYEGADLIYS   76 (127)
T ss_dssp             SSEEEEET-TT--HHHHHHHHH--S-EEEEE-SS-S---------STTEE---SSS--HHHHTTEEEEEE
T ss_pred             CCcEEEECcCCCHHHHHHHHHc--CCcEEEEECccc---ccc--cCcceeeecccCCCHHHhcCCcEEEE
Confidence            4699999999765 55555555  388999998 66   222  678899999999532    3788764

; PDB: 2K4M_A.

>KOG2918 consensus Carboxymethyl transferase [Posttranslational modification, protein turnover, chaperones]

Probab=91.69  E-value=0.42  Score=33.43  Aligned_cols=39  Identities=23%  Similarity=0.425  Sum_probs=33.8

Q ss_pred             CCCCeEEEecCCchHHHHHHHHHC--CCCeEEEeehHHHHH
Q 034578           22 NNIRSMVDVGGGTGTVLAEIVKSY--PHIKGINFDLQHVIA   60 (90)
Q Consensus        22 ~~~~~vlDvG~G~G~~~~~l~~~~--p~~~~~~~D~p~~~~   60 (90)
                      .....|+.+|||.-.+.-.|...+  +.++.+-+|.|..++
T Consensus        86 ~~~~qivnLGcG~D~l~frL~s~~~~~~~~fievDfp~~~~  126 (335)
T KOG2918|consen   86 DGKKQIVNLGAGFDTLYFRLLSSGELDRVKFIEVDFPEVVE  126 (335)
T ss_pred             CCceEEEEcCCCccchhhhhhccCCCCcceEEEecCcHHHH
Confidence            356789999999999999999998  788899999977654

>PF02153 PDH: Prephenate dehydrogenase; InterPro: IPR003099 Members of this family are prephenate dehydrogenases 1

Probab=91.27  E-value=0.13  Score=34.39  Aligned_cols=51  Identities=18%  Similarity=0.298  Sum_probs=35.0

Q ss_pred             HHHHHHHHCCCCeEEEeeh-HHHHHhCCCCCCeeEEEecCCCCCCcccEEEee
Q 034578           37 VLAEIVKSYPHIKGINFDL-QHVIATAPTHEGVSHVGGDMFDAIPNADAVFMK   88 (90)
Q Consensus        37 ~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~~rv~~~~~d~~~~~p~~D~i~l~   88 (90)
                      ++.+|.++.+..+++++|. +...+.+++.+-+.-...+ .+.+.++|+|+++
T Consensus         1 ~A~aL~~~g~~~~v~g~d~~~~~~~~a~~~g~~~~~~~~-~~~~~~~Dlvvla   52 (258)
T PF02153_consen    1 IALALRKAGPDVEVYGYDRDPETLEAALELGIIDEASTD-IEAVEDADLVVLA   52 (258)
T ss_dssp             HHHHHHHTTTTSEEEEE-SSHHHHHHHHHTTSSSEEESH-HHHGGCCSEEEE-
T ss_pred             ChHHHHhCCCCeEEEEEeCCHHHHHHHHHCCCeeeccCC-HhHhcCCCEEEEc
Confidence            5778899999999999999 8888888654444333333 2335568888875

3.1.12 from EC involved in tyrosine biosynthesis. ; GO: 0004665 prephenate dehydrogenase (NADP+) activity, 0008977 prephenate dehydrogenase activity, 0006571 tyrosine biosynthetic process, 0055114 oxidation-reduction process; PDB: 2F1K_B 2PV7_A 3DZB_B 3KTD_B 3B1F_A 2G5C_D 3GGP_C 3GGG_C 3GGO_D.

>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus

Probab=91.03  E-value=0.35  Score=27.92  Aligned_cols=55  Identities=27%  Similarity=0.298  Sum_probs=36.3

Q ss_pred             CCchHHHHHHHHHC--CCCeEEEeeh-HHHHHhCCCCCCeeEEEecCCCC-------CCcccEEEe
Q 034578           32 GGTGTVLAEIVKSY--PHIKGINFDL-QHVIATAPTHEGVSHVGGDMFDA-------IPNADAVFM   87 (90)
Q Consensus        32 ~G~G~~~~~l~~~~--p~~~~~~~D~-p~~~~~a~~~~rv~~~~~d~~~~-------~p~~D~i~l   87 (90)
                      ||.|.++..+++..  .+.+++++|. |+.++.+++.. +.++.||..++       +..+|.++.
T Consensus         4 ~G~g~~~~~i~~~L~~~~~~vvvid~d~~~~~~~~~~~-~~~i~gd~~~~~~l~~a~i~~a~~vv~   68 (116)
T PF02254_consen    4 IGYGRIGREIAEQLKEGGIDVVVIDRDPERVEELREEG-VEVIYGDATDPEVLERAGIEKADAVVI   68 (116)
T ss_dssp             ES-SHHHHHHHHHHHHTTSEEEEEESSHHHHHHHHHTT-SEEEES-TTSHHHHHHTTGGCESEEEE
T ss_pred             EcCCHHHHHHHHHHHhCCCEEEEEECCcHHHHHHHhcc-cccccccchhhhHHhhcCccccCEEEE
Confidence            45566666666553  3457999998 88887776555 78999999872       223776664

The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....

>PF11312 DUF3115: Protein of unknown function (DUF3115); InterPro: IPR021463 This eukaryotic family of proteins has no known function

Probab=90.30  E-value=0.62  Score=32.53  Aligned_cols=33  Identities=21%  Similarity=0.499  Sum_probs=25.8

Q ss_pred             CeEEEecCCchHHHHHHHHHC--------------------CCCeEEEeeh-HH
Q 034578           25 RSMVDVGGGTGTVLAEIVKSY--------------------PHIKGINFDL-QH   57 (90)
Q Consensus        25 ~~vlDvG~G~G~~~~~l~~~~--------------------p~~~~~~~D~-p~   57 (90)
                      .+||-||||.|.=..+++..+                    |.++++.+|+ ++
T Consensus        88 ~~VlCIGGGAGAElVAlAa~~~~~~~~~~s~~~~~~~~~~~~~l~itlvDiAdW  141 (315)
T PF11312_consen   88 LRVLCIGGGAGAELVALAAAFRTRSSEFLSKSPSGVSLSSPPSLSITLVDIADW  141 (315)
T ss_pred             ceEEEECCChHHHHHHHHHHHhhcccccCCcccccccccCCCcceEEEEEecCh
Confidence            699999999998766666655                    2368999997 54

>PF03514 GRAS: GRAS domain family; InterPro: IPR005202 Sequence analysis of the products of the GRAS (GAI, RGA, SCR) gene family indicates that they share a variable N terminus and a highly conserved C terminus that contains five recognizable motifs []

Probab=89.90  E-value=0.43  Score=33.87  Aligned_cols=43  Identities=14%  Similarity=0.299  Sum_probs=34.0

Q ss_pred             HHHHhhcccCCCCCCCeEEEecCCchH----HHHHHHHHC---CCCeEEEeeh
Q 034578           10 KAFVSHYKVDGFNNIRSMVDVGGGTGT----VLAEIVKSY---PHIKGINFDL   55 (90)
Q Consensus        10 ~~~~~~~~~~~~~~~~~vlDvG~G~G~----~~~~l~~~~---p~~~~~~~D~   55 (90)
                      +.|++.+.   -.+.-+|+|+|.|.|.    +..+|+++.   |.+++|+++.
T Consensus       100 qaIleA~~---g~~~vHIID~~i~~G~QW~~LiqaLa~R~~gpp~LrIT~i~~  149 (374)
T PF03514_consen  100 QAILEAFE---GERRVHIIDFGIGFGVQWPSLIQALASRPGGPPSLRITGIGP  149 (374)
T ss_pred             HHHHHHhc---cCcceEEEeccCCcchHHHHHHHHHhcCCCCCCeEEEEeccC
Confidence            55667776   3456789999999987    777777764   7899999997

Proteins in the GRAS family are transcription factors that seem to be involved in development and other processes. Mutation of the SCARECROW (SCR) gene results in a radial pattern defect, loss of a ground tissue layer, in the root. The PAT1 protein is involved in phytochrome A signal transduction []. GRAS proteins contain a conserved region of about 350 amino acids that can be divided in 5 motifs, found in the following order: leucine heptad repeat I, the VHIID motif, leucine heptad repeat II, the PFYRE motif and the SAW motif [, ]. Plant specific GRAS proteins have parallels in their motif structure to the animal Signal Transducers and Activators of Transcription (STAT) family of proteins [] which suggests also some parallels in their functions.

>PF14314 Methyltrans_Mon: Virus-capping methyltransferase

Probab=89.86  E-value=0.98  Score=34.64  Aligned_cols=48  Identities=19%  Similarity=0.406  Sum_probs=39.4

Q ss_pred             CCcchhhhHHHHHhhcccCCCCCCCeEEEecCCchHHHHHHHHHCCCCeEEE
Q 034578            1 MACTTKITMKAFVSHYKVDGFNNIRSMVDVGGGTGTVLAEIVKSYPHIKGIN   52 (90)
Q Consensus         1 m~~~~~~~~~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~   52 (90)
                      +|.-++...+.|+..+.   . .+.-.|-.|=|+|.++..+++.+|..+++.
T Consensus       304 ~ATGAHYKlRsIL~~~~---i-~~~d~l~~GDGSGGita~lLR~~p~sr~iF  351 (675)
T PF14314_consen  304 LATGAHYKLRSILKNLN---I-KYRDALCGGDGSGGITACLLRMNPTSRGIF  351 (675)
T ss_pred             ccccchhhHHHHHHhcC---C-CcceeEEEecCchHHHHHHHHhCcccceee
Confidence            34557778888998887   3 346678999999999999999999999764

>KOG1098 consensus Putative SAM-dependent rRNA methyltransferase SPB1 [RNA processing and modification; General function prediction only]

Probab=89.57  E-value=0.66  Score=35.44  Aligned_cols=35  Identities=20%  Similarity=0.259  Sum_probs=30.1

Q ss_pred             CCCCCeEEEecCCchHHHHHHHHHCCCCe-EEEeeh
Q 034578           21 FNNIRSMVDVGGGTGTVLAEIVKSYPHIK-GINFDL   55 (90)
Q Consensus        21 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~-~~~~D~   55 (90)
                      +.+...+||+||.+|....-.++..|--. ++++|+
T Consensus        42 l~~a~~vlDLcaAPG~W~QVA~q~~pv~slivGvDl   77 (780)
T KOG1098|consen   42 LEKAHVVLDLCAAPGGWLQVASQSMPVGSLIVGVDL   77 (780)
T ss_pred             ccccchheeeccCCcHHHHHHHHhCCCCceEEEeee
Confidence            56678899999999999999999988544 788997

>cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1

Probab=89.38  E-value=1.6  Score=30.60  Aligned_cols=45  Identities=20%  Similarity=0.161  Sum_probs=35.3

Q ss_pred             CCCCCeEEEecCCc-hHHHHHHHHHCCCCeEEEeeh-HHHHHhCCCC
Q 034578           21 FNNIRSMVDVGGGT-GTVLAEIVKSYPHIKGINFDL-QHVIATAPTH   65 (90)
Q Consensus        21 ~~~~~~vlDvG~G~-G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~   65 (90)
                      ..+..+|+.+|+|+ |.++..++++....++++++. ++..+.+++.
T Consensus       182 ~~~g~~VlV~g~G~vG~~~~~la~~~g~~~vi~~~~~~~~~~~~~~~  228 (386)
T cd08283         182 VKPGDTVAVWGCGPVGLFAARSAKLLGAERVIAIDRVPERLEMARSH  228 (386)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHc
Confidence            44567899999998 999999999986546888887 7777766543

Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T

>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain

Probab=89.23  E-value=2.1  Score=27.82  Aligned_cols=62  Identities=16%  Similarity=0.135  Sum_probs=38.9

Q ss_pred             CCeEEEecCCchHHH--HHHHHHCCCCeEEEeeh---HHHHHhCCCCCCeeEEEecCCC-CCCcccEEEee
Q 034578           24 IRSMVDVGGGTGTVL--AEIVKSYPHIKGINFDL---QHVIATAPTHEGVSHVGGDMFD-AIPNADAVFMK   88 (90)
Q Consensus        24 ~~~vlDvG~G~G~~~--~~l~~~~p~~~~~~~D~---p~~~~~a~~~~rv~~~~~d~~~-~~p~~D~i~l~   88 (90)
                      ..++|=||+|.=...  ..|++.  ++++++++.   +...+.+ +..+++++.+++.. .+..+|+++.+
T Consensus         9 gk~vlVvGgG~va~rk~~~Ll~~--ga~VtVvsp~~~~~l~~l~-~~~~i~~~~~~~~~~dl~~~~lVi~a   76 (205)
T TIGR01470         9 GRAVLVVGGGDVALRKARLLLKA--GAQLRVIAEELESELTLLA-EQGGITWLARCFDADILEGAFLVIAA   76 (205)
T ss_pred             CCeEEEECcCHHHHHHHHHHHHC--CCEEEEEcCCCCHHHHHHH-HcCCEEEEeCCCCHHHhCCcEEEEEC
Confidence            468999999964433  333333  456777763   3333333 34589999988865 35568888764

This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.

>COG1255 Uncharacterized protein conserved in archaea [Function unknown]

Probab=89.17  E-value=2.9  Score=25.31  Aligned_cols=58  Identities=28%  Similarity=0.403  Sum_probs=40.4

Q ss_pred             CCCeEEEecCCchH-HHHHHHHHCCCCeEEEeeh-HHHHHhCCCCCCeeEEEecCCCC-CC---cccEEEe
Q 034578           23 NIRSMVDVGGGTGT-VLAEIVKSYPHIKGINFDL-QHVIATAPTHEGVSHVGGDMFDA-IP---NADAVFM   87 (90)
Q Consensus        23 ~~~~vlDvG~G~G~-~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~~rv~~~~~d~~~~-~p---~~D~i~l   87 (90)
                      ..++|++||-|.=. .+..|+++  +..+++.|+ +.   .++  .-++++.-|.++| +.   .+|+|+.
T Consensus        13 ~~gkVvEVGiG~~~~VA~~L~e~--g~dv~atDI~~~---~a~--~g~~~v~DDitnP~~~iY~~A~lIYS   76 (129)
T COG1255          13 ARGKVVEVGIGFFLDVAKRLAER--GFDVLATDINEK---TAP--EGLRFVVDDITNPNISIYEGADLIYS   76 (129)
T ss_pred             cCCcEEEEccchHHHHHHHHHHc--CCcEEEEecccc---cCc--ccceEEEccCCCccHHHhhCccceee
Confidence            45699999998766 44555554  377899998 55   333  5688999999985 22   3787763

>PF06690 DUF1188: Protein of unknown function (DUF1188); InterPro: IPR009573 This family consists of several hypothetical archaeal proteins of around 260 residues in length, which seem to be specific to Methanobacterium, Methanococcus and Methanopyrus species

Probab=89.02  E-value=4.2  Score=27.51  Aligned_cols=73  Identities=12%  Similarity=0.144  Sum_probs=45.4

Q ss_pred             hhhhHHHHHhhcccCCCCCCCeEEEecCC-chHHHHHHHHHCCCCeEEEeeh-HHHHHhCCCCCCeeEEEecCCCCCCc-
Q 034578            5 TKITMKAFVSHYKVDGFNNIRSMVDVGGG-TGTVLAEIVKSYPHIKGINFDL-QHVIATAPTHEGVSHVGGDMFDAIPN-   81 (90)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~vlDvG~G-~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~~rv~~~~~d~~~~~p~-   81 (90)
                      ++..++++..-++   -....++|=+|+= +|.+....+...-  +++.+|+ |++.+..  ++++.|...  ..+.+. 
T Consensus        26 ~ekKa~ai~~~le---~~~~k~~lI~G~YltG~~iA~~L~~~~--eV~lvDI~p~lk~ll--~~~i~F~~~--~~~~~~~   96 (252)
T PF06690_consen   26 AEKKANAIKYWLE---GEEFKQALIFGAYLTGNFIASALSKKC--EVTLVDIHPHLKELL--NENIKFMEF--RNGLEGN   96 (252)
T ss_pred             HHHHHHHHHHHhc---ccccceEEEEEEEeehHHHHHHhccCc--eEEEEeCcHHHHHHh--cCCCceeec--cCCCCCC
Confidence            3444555555555   2334588888873 6776666555432  8999999 8887765  567777732  223333 


Q ss_pred             ccEEE
Q 034578           82 ADAVF   86 (90)
Q Consensus        82 ~D~i~   86 (90)
                      +|+|+
T Consensus        97 ~DlII  101 (252)
T PF06690_consen   97 PDLII  101 (252)
T ss_pred             CCEEE
Confidence            77775

The function of this family is unknown.

>PRK11524 putative methyltransferase; Provisional

Probab=88.95  E-value=1.2  Score=30.26  Aligned_cols=52  Identities=19%  Similarity=0.047  Sum_probs=39.4

Q ss_pred             hhHHHHHhhcccCCCCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeeh-HHHHHhCCC
Q 034578            7 ITMKAFVSHYKVDGFNNIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDL-QHVIATAPT   64 (90)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~   64 (90)
                      .+.+.++..+.    .....|||-=+|||..+.+..+.  +=+.+++|+ |+-++.|++
T Consensus       196 ~L~erlI~~~S----~~GD~VLDPF~GSGTT~~AA~~l--gR~~IG~Ei~~~Y~~~a~~  248 (284)
T PRK11524        196 ALLKRIILASS----NPGDIVLDPFAGSFTTGAVAKAS--GRKFIGIEINSEYIKMGLR  248 (284)
T ss_pred             HHHHHHHHHhC----CCCCEEEECCCCCcHHHHHHHHc--CCCEEEEeCCHHHHHHHHH
Confidence            34556666554    35689999999999999988876  456899998 887776654

>PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins

Probab=88.60  E-value=3.5  Score=28.14  Aligned_cols=67  Identities=10%  Similarity=0.041  Sum_probs=48.6

Q ss_pred             CCCCCeEEEecCCchHHHHHHHHHCC-CCeEEEeeh-HHHHHhCCC------CCCeeEEEecCCCC----CCc-ccEEEe
Q 034578           21 FNNIRSMVDVGGGTGTVLAEIVKSYP-HIKGINFDL-QHVIATAPT------HEGVSHVGGDMFDA----IPN-ADAVFM   87 (90)
Q Consensus        21 ~~~~~~vlDvG~G~G~~~~~l~~~~p-~~~~~~~D~-p~~~~~a~~------~~rv~~~~~d~~~~----~p~-~D~i~l   87 (90)
                      ..+..+|||.++++|.=+..++...+ ...+++.|+ ++-++..++      ..++.....|..+.    .+. +|.|++
T Consensus        83 ~~~~~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~~~v~~~~~D~~~~~~~~~~~~fd~Vlv  162 (283)
T PF01189_consen   83 PQPGERVLDMCAAPGGKTTHLAELMGNKGEIVANDISPKRLKRLKENLKRLGVFNVIVINADARKLDPKKPESKFDRVLV  162 (283)
T ss_dssp             TTTTSEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHHHHHHHHHHHHHTT-SSEEEEESHHHHHHHHHHTTTEEEEEE
T ss_pred             ccccccccccccCCCCceeeeeecccchhHHHHhccCHHHHHHHHHHHHhcCCceEEEEeeccccccccccccccchhhc
Confidence            44567899999999999999998876 788999998 665554433      25677776776542    233 788775

In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A ....

>PF05050 Methyltransf_21: Methyltransferase FkbM domain; InterPro: IPR007744 This entry contains proteins of unknown function

Probab=88.56  E-value=1.1  Score=27.01  Aligned_cols=32  Identities=22%  Similarity=0.259  Sum_probs=19.8

Q ss_pred             EecCCch--HHHHHHH--HHCCCCeEEEeeh-HHHHH
Q 034578           29 DVGGGTG--TVLAEIV--KSYPHIKGINFDL-QHVIA   60 (90)
Q Consensus        29 DvG~G~G--~~~~~l~--~~~p~~~~~~~D~-p~~~~   60 (90)
                      |||+..|  .......  +..|..+++++|. |...+
T Consensus         1 DvGA~~G~~~~~~~~~~~~~~~~~~v~~~Ep~p~~~~   37 (167)
T PF05050_consen    1 DVGANIGFWSSTVYFLEKKCGPGGRVHAFEPNPSNFE   37 (167)
T ss_dssp             EES-TTS--HHHHHHHHHHTS--SEEEEE---HHHHH
T ss_pred             CcccCCChhHHHHHHHHHHcCCCCEEEEEECCHHHHH
Confidence            8999999  6555554  4578999999997 76543

; PDB: 2PY6_A.

>PF12692 Methyltransf_17: S-adenosyl-L-methionine methyltransferase; PDB: 3IHT_B

Probab=88.55  E-value=2.5  Score=26.69  Aligned_cols=45  Identities=13%  Similarity=0.181  Sum_probs=29.5

Q ss_pred             hhHHHHHhhcccCCCCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeeh
Q 034578            7 ITMKAFVSHYKVDGFNNIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDL   55 (90)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~   55 (90)
                      ..-+++++....    -..-|+|+|=|+|..-..|.+.+|+-++.++|.
T Consensus        16 ~~L~~a~~~v~~----~~G~VlElGLGNGRTydHLRe~~p~R~I~vfDR   60 (160)
T PF12692_consen   16 DCLNWAAAQVAG----LPGPVLELGLGNGRTYDHLREIFPDRRIYVFDR   60 (160)
T ss_dssp             HHHHHHHHHTTT------S-EEEE--TTSHHHHHHHHH--SS-EEEEES
T ss_pred             HHHHHHHHHhcC----CCCceEEeccCCCccHHHHHHhCCCCeEEEEee
Confidence            334455555552    247799999999999999999999999999994

>KOG2782 consensus Putative SAM dependent methyltransferases [General function prediction only]

Probab=88.06  E-value=0.48  Score=31.93  Aligned_cols=53  Identities=19%  Similarity=0.158  Sum_probs=43.8

Q ss_pred             HHHHHhhcccCCCCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeeh-HHHHHhCCC
Q 034578            9 MKAFVSHYKVDGFNNIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDL-QHVIATAPT   64 (90)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~   64 (90)
                      ...+++.+.   .-+.++.+|.--|+|..+..+++.+|.++..++|. |-+-+.|+.
T Consensus        32 ~devl~~ls---pv~g~sf~DmTfGagGHt~~ilqk~se~k~yalDrDP~A~~La~~   85 (303)
T KOG2782|consen   32 LDEVLDILS---PVRGRSFVDMTFGAGGHTSSILQKHSELKNYALDRDPVARKLAHF   85 (303)
T ss_pred             hhhHHHHcC---CCCCceEEEEeccCCcchHHHHHhCcHhhhhhhccChHHHHHHHH
Confidence            345566665   44668999999999999999999999999999999 888777753

>KOG2920 consensus Predicted methyltransferase [General function prediction only]

Probab=87.82  E-value=0.79  Score=31.55  Aligned_cols=36  Identities=11%  Similarity=0.058  Sum_probs=28.3

Q ss_pred             CCCeEEEecCCchHHHHHHHHHCCCCeEEEeeh-HHHH
Q 034578           23 NIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDL-QHVI   59 (90)
Q Consensus        23 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~   59 (90)
                      ...+|||+|||+|.-.+......- .++..+|. ..++
T Consensus       116 ~~k~vLELgCg~~Lp~i~~~~~~~-~~~~fqD~na~vl  152 (282)
T KOG2920|consen  116 SGKRVLELGCGAALPGIFAFVKGA-VSVHFQDFNAEVL  152 (282)
T ss_pred             cCceeEecCCcccccchhhhhhcc-ceeeeEecchhhe
Confidence            468999999999998888877642 77888887 4544

>COG0286 HsdM Type I restriction-modification system methyltransferase subunit [Defense mechanisms]

Probab=87.41  E-value=1.2  Score=32.84  Aligned_cols=54  Identities=17%  Similarity=0.119  Sum_probs=38.8

Q ss_pred             hHHHHHhhcccCCCCCCCeEEEecCCchHHHHHHHHHCC----CCeEEEeeh-HHHHHhCCC
Q 034578            8 TMKAFVSHYKVDGFNNIRSMVDVGGGTGTVLAEIVKSYP----HIKGINFDL-QHVIATAPT   64 (90)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p----~~~~~~~D~-p~~~~~a~~   64 (90)
                      +.+-+++.+.   .....+|.|-.||+|.+.....+...    +....++|+ +.+...++.
T Consensus       174 v~~liv~~l~---~~~~~~i~DpacGsgg~l~~a~~~~~~~~~~~~~yGqE~~~~t~~l~~m  232 (489)
T COG0286         174 VSELIVELLD---PEPRNSIYDPACGSGGMLLQAAKYLKRHQDEIFIYGQEINDTTYRLAKM  232 (489)
T ss_pred             HHHHHHHHcC---CCCCCeecCCCCchhHHHHHHHHHHHhhccceeEEEEeCCHHHHHHHHH
Confidence            3444455554   34556999999999998887776653    377899998 777776654

>PLN02668 indole-3-acetate carboxyl methyltransferase

Probab=87.39  E-value=0.54  Score=33.71  Aligned_cols=35  Identities=23%  Similarity=0.266  Sum_probs=24.2

Q ss_pred             CCCeEEEecCCchHHHHH--------HHHH-------CCCCeEEEeehHH
Q 034578           23 NIRSMVDVGGGTGTVLAE--------IVKS-------YPHIKGINFDLQH   57 (90)
Q Consensus        23 ~~~~vlDvG~G~G~~~~~--------l~~~-------~p~~~~~~~D~p~   57 (90)
                      +.-+|+|+|||+|..+..        +.++       -|..++..=|+|.
T Consensus        63 ~~~~iaDlGcs~G~ntl~~vs~iI~~i~~~~~~~~~~~pe~qv~~nDLP~  112 (386)
T PLN02668         63 VPFTAVDLGCSSGSNTIHIIDVIVKHMSKRYESAGLDPPEFSAFFSDLPS  112 (386)
T ss_pred             cceeEEEecCCCCccHHHHHHHHHHHHHHHhhhcCCCCCcceEEecCCCC
Confidence            356899999999965433        2232       3568888888763

>PRK07502 cyclohexadienyl dehydrogenase; Validated

Probab=87.33  E-value=2  Score=29.37  Aligned_cols=65  Identities=17%  Similarity=0.059  Sum_probs=35.5

Q ss_pred             CCeEEEecCCc--hHHHHHHHHHCCCCeEEEeeh-HHHHHhCCCCCCeeEEEecCCCCCCcccEEEee
Q 034578           24 IRSMVDVGGGT--GTVLAEIVKSYPHIKGINFDL-QHVIATAPTHEGVSHVGGDMFDAIPNADAVFMK   88 (90)
Q Consensus        24 ~~~vlDvG~G~--G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~~rv~~~~~d~~~~~p~~D~i~l~   88 (90)
                      ..+|.=||+|.  +.++..+.+.....+++++|. ++..+.+++.+-......+..+.+..+|+|++.
T Consensus         6 ~~~I~IIG~G~mG~sla~~l~~~g~~~~V~~~dr~~~~~~~a~~~g~~~~~~~~~~~~~~~aDvViia   73 (307)
T PRK07502          6 FDRVALIGIGLIGSSLARAIRRLGLAGEIVGADRSAETRARARELGLGDRVTTSAAEAVKGADLVILC   73 (307)
T ss_pred             CcEEEEEeeCHHHHHHHHHHHhcCCCcEEEEEECCHHHHHHHHhCCCCceecCCHHHHhcCCCEEEEC
Confidence            35788888774  334455554433347899998 776666554321111112221223458888764

>PF12242 Eno-Rase_NADH_b: NAD(P)H binding domain of trans-2-enoyl-CoA reductase; PDB: 3ZU5_A 3ZU3_A 3ZU4_A 3ZU2_A 3S8M_A

Probab=87.04  E-value=3.7  Score=22.91  Aligned_cols=35  Identities=17%  Similarity=0.384  Sum_probs=22.4

Q ss_pred             CCCCCeEEEecCCchH-HHHHHHHHC-CCCeEEEeeh
Q 034578           21 FNNIRSMVDVGGGTGT-VLAEIVKSY-PHIKGINFDL   55 (90)
Q Consensus        21 ~~~~~~vlDvG~G~G~-~~~~l~~~~-p~~~~~~~D~   55 (90)
                      .++++++|-+|+.+|. ++.+++..| -++..+++-.
T Consensus        36 ~~GpK~VLViGaStGyGLAsRIa~aFg~gA~TiGV~f   72 (78)
T PF12242_consen   36 INGPKKVLVIGASTGYGLASRIAAAFGAGADTIGVSF   72 (78)
T ss_dssp             -TS-SEEEEES-SSHHHHHHHHHHHHCC--EEEEEE-
T ss_pred             CCCCceEEEEecCCcccHHHHHHHHhcCCCCEEEEee
Confidence            4667899999999998 887788875 3455555443

>KOG2666 consensus UDP-glucose/GDP-mannose dehydrogenase [Carbohydrate transport and metabolism; Signal transduction mechanisms]

Probab=86.72  E-value=1  Score=32.04  Aligned_cols=63  Identities=25%  Similarity=0.318  Sum_probs=41.0

Q ss_pred             eEEEecCC--chHHHHHHHHHCCCCeEEEeeh--HHHHHhCCC----------------CCCeeEEEecCCCCCCcccEE
Q 034578           26 SMVDVGGG--TGTVLAEIVKSYPHIKGINFDL--QHVIATAPT----------------HEGVSHVGGDMFDAIPNADAV   85 (90)
Q Consensus        26 ~vlDvG~G--~G~~~~~l~~~~p~~~~~~~D~--p~~~~~a~~----------------~~rv~~~~~d~~~~~p~~D~i   85 (90)
                      .|+-+|.|  -|-...-++..+|++.++.+|+  |..-+.-..                +++--|+..|..+.+.++|+|
T Consensus         3 kiccigagyvggptcavia~kcp~i~vtvvd~s~~ri~~wnsd~lpiyepgldevv~~crgknlffstdiekai~eadlv   82 (481)
T KOG2666|consen    3 KICCIGAGYVGGPTCAVIALKCPDIEVTVVDISVPRINAWNSDKLPIYEPGLDEVVKQCRGKNLFFSTDIEKAIKEADLV   82 (481)
T ss_pred             eEEEecCcccCCcchheeeecCCceEEEEEecCchHhhcccCCCCcccCCCHHHHHHHhcCCceeeecchHHHhhhcceE
Confidence            57777777  3556667778899999999997  332221111                234445566665556678999


Q ss_pred             Eee
Q 034578           86 FMK   88 (90)
Q Consensus        86 ~l~   88 (90)
                      +.+
T Consensus        83 fis   85 (481)
T KOG2666|consen   83 FIS   85 (481)
T ss_pred             EEE
Confidence            876

>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]

Probab=86.64  E-value=2.8  Score=28.73  Aligned_cols=64  Identities=17%  Similarity=0.109  Sum_probs=41.0

Q ss_pred             CeEEEecCC--chHHHHHHHHHCCCCeEEEeeh-HHHHHhCCCCCCeeEEEecC-CCCCCcccEEEee
Q 034578           25 RSMVDVGGG--TGTVLAEIVKSYPHIKGINFDL-QHVIATAPTHEGVSHVGGDM-FDAIPNADAVFMK   88 (90)
Q Consensus        25 ~~vlDvG~G--~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~~rv~~~~~d~-~~~~p~~D~i~l~   88 (90)
                      .+|+=+|.|  -|+++..+.++.+...+++.|. ....+.+.+.+-+.-...+. ......+|+|+++
T Consensus         4 ~~v~IvG~GliG~s~a~~l~~~g~~v~i~g~d~~~~~~~~a~~lgv~d~~~~~~~~~~~~~aD~Viva   71 (279)
T COG0287           4 MKVGIVGLGLMGGSLARALKEAGLVVRIIGRDRSAATLKAALELGVIDELTVAGLAEAAAEADLVIVA   71 (279)
T ss_pred             cEEEEECCchHHHHHHHHHHHcCCeEEEEeecCcHHHHHHHhhcCcccccccchhhhhcccCCEEEEe
Confidence            456666766  5778888888888888999998 66666665432111112222 2344557888875

>KOG3201 consensus Uncharacterized conserved protein [Function unknown]

Probab=86.54  E-value=0.078  Score=34.00  Aligned_cols=65  Identities=17%  Similarity=0.155  Sum_probs=43.7

Q ss_pred             CCeEEEecCC-chHHHHHHHHHCCCCeEEEeeh-HHHHHhCCC---------CCCeeEEEecCCCC--C-C--cccEEEe
Q 034578           24 IRSMVDVGGG-TGTVLAEIVKSYPHIKGINFDL-QHVIATAPT---------HEGVSHVGGDMFDA--I-P--NADAVFM   87 (90)
Q Consensus        24 ~~~vlDvG~G-~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~---------~~rv~~~~~d~~~~--~-p--~~D~i~l   87 (90)
                      ..+||++|+| +|.-++.++...|...+..-|- +..++.-++         ..+++.+..+....  . .  .||+|+.
T Consensus        30 g~~ilelgggft~laglmia~~a~~~~v~ltdgne~svrnv~ki~~~n~~s~~tsc~vlrw~~~~aqsq~eq~tFDiIla  109 (201)
T KOG3201|consen   30 GRRILELGGGFTGLAGLMIACKAPDSSVWLTDGNEESVRNVEKIRNSNMASSLTSCCVLRWLIWGAQSQQEQHTFDIILA  109 (201)
T ss_pred             HHHHHHhcCchhhhhhhheeeecCCceEEEecCCHHHHHHHHHHHhcccccccceehhhHHHHhhhHHHHhhCcccEEEe
Confidence            4689999999 5666777788889999999996 665554432         24555555555542  1 1  2788876


Q ss_pred             e
Q 034578           88 K   88 (90)
Q Consensus        88 ~   88 (90)
                      +
T Consensus       110 A  110 (201)
T KOG3201|consen  110 A  110 (201)
T ss_pred             c
Confidence            4

>PRK13699 putative methylase; Provisional

Probab=86.47  E-value=2.1  Score=28.27  Aligned_cols=51  Identities=12%  Similarity=0.260  Sum_probs=38.1

Q ss_pred             hHHHHHhhcccCCCCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeeh-HHHHHhCCC
Q 034578            8 TMKAFVSHYKVDGFNNIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDL-QHVIATAPT   64 (90)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~   64 (90)
                      +.+.++..+.    .+...|||-=||+|..+.+..+.  +-+.+++|+ |+-.+.+.+
T Consensus       152 l~~~~i~~~s----~~g~~vlDpf~Gsgtt~~aa~~~--~r~~~g~e~~~~y~~~~~~  203 (227)
T PRK13699        152 SLQPLIESFT----HPNAIVLDPFAGSGSTCVAALQS--GRRYIGIELLEQYHRAGQQ  203 (227)
T ss_pred             HHHHHHHHhC----CCCCEEEeCCCCCCHHHHHHHHc--CCCEEEEecCHHHHHHHHH
Confidence            4455665554    25678999999999999988876  456899998 877666643

>PRK06719 precorrin-2 dehydrogenase; Validated

Probab=86.36  E-value=4  Score=25.38  Aligned_cols=62  Identities=10%  Similarity=0.109  Sum_probs=35.4

Q ss_pred             CCCeEEEecCCchHH--HHHHHHHCCCCeEEEeehHHHHHhCCCCCCeeEEEecCCC-CCCcccEEEe
Q 034578           23 NIRSMVDVGGGTGTV--LAEIVKSYPHIKGINFDLQHVIATAPTHEGVSHVGGDMFD-AIPNADAVFM   87 (90)
Q Consensus        23 ~~~~vlDvG~G~G~~--~~~l~~~~p~~~~~~~D~p~~~~~a~~~~rv~~~~~d~~~-~~p~~D~i~l   87 (90)
                      ...+++=||||.=..  +..|.+.  +.+++.++ |+..+..++.+.+++....+.+ .+..+|+++.
T Consensus        12 ~~~~vlVvGGG~va~rka~~Ll~~--ga~V~VIs-p~~~~~l~~l~~i~~~~~~~~~~dl~~a~lVia   76 (157)
T PRK06719         12 HNKVVVIIGGGKIAYRKASGLKDT--GAFVTVVS-PEICKEMKELPYITWKQKTFSNDDIKDAHLIYA   76 (157)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhC--CCEEEEEc-CccCHHHHhccCcEEEecccChhcCCCceEEEE
Confidence            457899999985443  3344443  45666665 3322222223456666665554 4566888875

>KOG3987 consensus Uncharacterized conserved protein DREV/CGI-81 [Function unknown]

Probab=86.20  E-value=0.41  Score=32.03  Aligned_cols=39  Identities=13%  Similarity=0.281  Sum_probs=27.6

Q ss_pred             CCCeEEEecCCchHHHHHHHHHCCCCeEEEeeh-HHHHHhCC
Q 034578           23 NIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDL-QHVIATAP   63 (90)
Q Consensus        23 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~   63 (90)
                      .+.++||+|.|.|.++..++..+.+  +.+-++ ..|..+-+
T Consensus       112 ~~~~lLDlGAGdGeit~~m~p~fee--vyATElS~tMr~rL~  151 (288)
T KOG3987|consen  112 EPVTLLDLGAGDGEITLRMAPTFEE--VYATELSWTMRDRLK  151 (288)
T ss_pred             CCeeEEeccCCCcchhhhhcchHHH--HHHHHhhHHHHHHHh
Confidence            4579999999999999988877655  334444 44555444

>KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=86.08  E-value=1.8  Score=30.61  Aligned_cols=44  Identities=16%  Similarity=0.195  Sum_probs=38.4

Q ss_pred             CCCCCeEEEecCC-chHHHHHHHHHCCCCeEEEeeh-HHHHHhCCC
Q 034578           21 FNNIRSMVDVGGG-TGTVLAEIVKSYPHIKGINFDL-QHVIATAPT   64 (90)
Q Consensus        21 ~~~~~~vlDvG~G-~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~   64 (90)
                      .....++|-+|+| .|.++...++.+-..++++.|+ +.-++.|++
T Consensus       167 vk~Gs~vLV~GAGPIGl~t~l~Aka~GA~~VVi~d~~~~Rle~Ak~  212 (354)
T KOG0024|consen  167 VKKGSKVLVLGAGPIGLLTGLVAKAMGASDVVITDLVANRLELAKK  212 (354)
T ss_pred             cccCCeEEEECCcHHHHHHHHHHHHcCCCcEEEeecCHHHHHHHHH
Confidence            4456799999999 5888888899999999999999 999999887

>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B

Probab=85.10  E-value=3.7  Score=25.25  Aligned_cols=53  Identities=28%  Similarity=0.353  Sum_probs=36.4

Q ss_pred             CCchHHHHHHHHHC--CCCeEEEeeh-HHHHHhCCCCCCeeEEEecCCCC------CCcccEEEe
Q 034578           32 GGTGTVLAEIVKSY--PHIKGINFDL-QHVIATAPTHEGVSHVGGDMFDA------IPNADAVFM   87 (90)
Q Consensus        32 ~G~G~~~~~l~~~~--p~~~~~~~D~-p~~~~~a~~~~rv~~~~~d~~~~------~p~~D~i~l   87 (90)
                      ||||.++..++++.  .+.+++++-. ++-.+.   ..+++++.+|++++      +.++|.++.
T Consensus         5 GatG~vG~~l~~~L~~~~~~V~~~~R~~~~~~~---~~~~~~~~~d~~d~~~~~~al~~~d~vi~   66 (183)
T PF13460_consen    5 GATGFVGRALAKQLLRRGHEVTALVRSPSKAED---SPGVEIIQGDLFDPDSVKAALKGADAVIH   66 (183)
T ss_dssp             TTTSHHHHHHHHHHHHTTSEEEEEESSGGGHHH---CTTEEEEESCTTCHHHHHHHHTTSSEEEE
T ss_pred             CCCChHHHHHHHHHHHCCCEEEEEecCchhccc---ccccccceeeehhhhhhhhhhhhcchhhh
Confidence            55777777666653  3478888876 554443   67899999999883      224787775

...

>KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only]

Probab=84.99  E-value=0.82  Score=32.51  Aligned_cols=63  Identities=19%  Similarity=0.169  Sum_probs=45.5

Q ss_pred             CCeEEEecCCchHHHHHHHHHCCCCeEEEeeh-HHHHHhCCC-------CCCeeEEEecCCC-CCCc--ccEEEe
Q 034578           24 IRSMVDVGGGTGTVLAEIVKSYPHIKGINFDL-QHVIATAPT-------HEGVSHVGGDMFD-AIPN--ADAVFM   87 (90)
Q Consensus        24 ~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~-------~~rv~~~~~d~~~-~~p~--~D~i~l   87 (90)
                      ...++|+|||-|.....+.. +.....+++|. +.-+.++..       ..+..++.+|+.+ +.++  +|.+.+
T Consensus       111 ~~~~~~~~~g~~~~~~~i~~-f~~~~~~Gl~~n~~e~~~~~~~~~~~~l~~k~~~~~~~~~~~~fedn~fd~v~~  184 (364)
T KOG1269|consen  111 GSKVLDVGTGVGGPSRYIAV-FKKAGVVGLDNNAYEAFRANELAKKAYLDNKCNFVVADFGKMPFEDNTFDGVRF  184 (364)
T ss_pred             cccccccCcCcCchhHHHHH-hccCCccCCCcCHHHHHHHHHHHHHHHhhhhcceehhhhhcCCCCccccCcEEE
Confidence            34788999999999998877 56788899997 655444432       3455668889888 4554  777654

>TIGR00027 mthyl_TIGR00027 methyltransferase, putative, TIGR00027 family

Probab=84.43  E-value=1.9  Score=29.08  Aligned_cols=53  Identities=23%  Similarity=0.255  Sum_probs=38.9

Q ss_pred             CCCeEEEecCCchHHHHHHHHHCC-CCeEEEeehHHHHHhCCC---------CCCeeEEEecCCC
Q 034578           23 NIRSMVDVGGGTGTVLAEIVKSYP-HIKGINFDLQHVIATAPT---------HEGVSHVGGDMFD   77 (90)
Q Consensus        23 ~~~~vlDvG~G~G~~~~~l~~~~p-~~~~~~~D~p~~~~~a~~---------~~rv~~~~~d~~~   77 (90)
                      +...|+.+|||-=.-...+.  +| ++++.-+|+|++++.-++         ..+.+++..|+.+
T Consensus        81 g~~qvV~LGaGlDTr~~Rl~--~~~~~~~~EvD~P~v~~~K~~~l~~~~~~~~~~~~~v~~Dl~~  143 (260)
T TIGR00027        81 GIRQVVILGAGLDTRAYRLP--WPDGTRVFEVDQPAVLAFKEKVLAELGAEPPAHRRAVPVDLRQ  143 (260)
T ss_pred             CCcEEEEeCCccccHHHhcC--CCCCCeEEECCChHHHHHHHHHHHHcCCCCCCceEEeccCchh
Confidence            45679999999887777663  33 578888888987764221         3678999999863

This model represents a set of probable methyltransferases, about 300 amino acids long, with essentially full length homology. Members share an N-terminal region described by Pfam model pfam02409. Included are a paralogous family of 12 proteins in Mycobacterium tuberculosis, plus close homologs in related species, a family of 8 in the archaeon Methanosarcina acetivorans, and small numbers of members in other species, including plants.

>PF03492 Methyltransf_7: SAM dependent carboxyl methyltransferase; InterPro: IPR005299 This family of plant methyltransferases contains enzymes that act on a variety of substrates including salicylic acid, jasmonic acid and 7-Methylxanthine

Probab=84.33  E-value=1.9  Score=30.15  Aligned_cols=68  Identities=18%  Similarity=0.211  Sum_probs=36.2

Q ss_pred             CCCCCeEEEecCCchHHHHHHH--------HHC--------CCCeEEEeehHH-----HHH---hCC----CCCC--eeE
Q 034578           21 FNNIRSMVDVGGGTGTVLAEIV--------KSY--------PHIKGINFDLQH-----VIA---TAP----THEG--VSH   70 (90)
Q Consensus        21 ~~~~~~vlDvG~G~G~~~~~l~--------~~~--------p~~~~~~~D~p~-----~~~---~a~----~~~r--v~~   70 (90)
                      ..+.-+|+|+||.+|..+..+.        +++        |..++..-|+|.     ..+   .-.    ...+  +.-
T Consensus        14 ~~~~~~iaD~GcS~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~e~~v~~nDlP~NDFn~lF~~l~~~~~~~~~~~~~f~~g   93 (334)
T PF03492_consen   14 NPKPFRIADLGCSSGPNSLLAVSNIIDAIRERCRSSNNQPPPEFQVFFNDLPSNDFNTLFKSLPSFQQSLKKFRNYFVSG   93 (334)
T ss_dssp             TTTEEEEEEES--SSHHHHHHHHHHHHHHHHHHHCTT-SS--EEEEEEEE-TTS-HHHHHHCHHHHHHHHHHTTSEEEEE
T ss_pred             CCCceEEEecCCCCCccHHHHHHHHHHHHHHHhhhhcCCCCCeEEEEeCCCCCccHHHHHHhChhhhhccCCCceEEEEe
Confidence            4466799999999998665443        222        456888889864     111   000    0122  556


Q ss_pred             EEecCCCC-CCc--ccEEEee
Q 034578           71 VGGDMFDA-IPN--ADAVFMK   88 (90)
Q Consensus        71 ~~~d~~~~-~p~--~D~i~l~   88 (90)
                      ++|+|+.. +|.  .|+++.+
T Consensus        94 vpgSFy~rLfP~~Svh~~~Ss  114 (334)
T PF03492_consen   94 VPGSFYGRLFPSNSVHFGHSS  114 (334)
T ss_dssp             EES-TTS--S-TT-EEEEEEE
T ss_pred             cCchhhhccCCCCceEEEEEe
Confidence            67899985 464  6776654

Caffeine is synthesized through sequential three-step methylation of xanthine derivatives at positions 7-N, 3-N, and 1-N. The protein 7-methylxanthine methyltransferase (designated as CaMXMT) catalyses the second step to produce theobromine [].; GO: 0008168 methyltransferase activity; PDB: 2EFJ_A 1M6E_X 2EG5_C 3B5I_B.

>PRK07417 arogenate dehydrogenase; Reviewed

Probab=84.21  E-value=2.5  Score=28.49  Aligned_cols=59  Identities=15%  Similarity=0.140  Sum_probs=32.2

Q ss_pred             EEEecCCc--hHHHHHHHHHCCCCeEEEeeh-HHHHHhCCCCCCeeEEEecCCCCCCcccEEEee
Q 034578           27 MVDVGGGT--GTVLAEIVKSYPHIKGINFDL-QHVIATAPTHEGVSHVGGDMFDAIPNADAVFMK   88 (90)
Q Consensus        27 vlDvG~G~--G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~~rv~~~~~d~~~~~p~~D~i~l~   88 (90)
                      |.=||+|.  |.++..+.++  +.+++++|. ++..+.+.+.+.+.....+. +.+..+|+|++.
T Consensus         3 I~IIG~G~mG~sla~~L~~~--g~~V~~~d~~~~~~~~a~~~g~~~~~~~~~-~~~~~aDlVila   64 (279)
T PRK07417          3 IGIVGLGLIGGSLGLDLRSL--GHTVYGVSRRESTCERAIERGLVDEASTDL-SLLKDCDLVILA   64 (279)
T ss_pred             EEEEeecHHHHHHHHHHHHC--CCEEEEEECCHHHHHHHHHCCCcccccCCH-hHhcCCCEEEEc
Confidence            55567653  3455555443  457999998 77776655433222221221 223447888764

>PHA01634 hypothetical protein

Probab=83.81  E-value=1.9  Score=26.73  Aligned_cols=41  Identities=10%  Similarity=0.053  Sum_probs=32.4

Q ss_pred             CCCeEEEecCCchHHHHHHHHHCCCCeEEEeeh-HHHHHhCCC
Q 034578           23 NIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDL-QHVIATAPT   64 (90)
Q Consensus        23 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~   64 (90)
                      ...+|+|||++-|.-++.++.+. .-++++++. |...+..++
T Consensus        28 k~KtV~dIGA~iGdSaiYF~l~G-AK~Vva~E~~~kl~k~~ee   69 (156)
T PHA01634         28 YQRTIQIVGADCGSSALYFLLRG-ASFVVQYEKEEKLRKKWEE   69 (156)
T ss_pred             cCCEEEEecCCccchhhHHhhcC-ccEEEEeccCHHHHHHHHH
Confidence            35799999999999999998864 345888997 777766654

>PRK05562 precorrin-2 dehydrogenase; Provisional

Probab=83.37  E-value=4.4  Score=26.94  Aligned_cols=65  Identities=11%  Similarity=0.186  Sum_probs=42.2

Q ss_pred             CCCeEEEecCCchHHH--HHHHHHCCCCeEEEeeh-HHHHHhCCCCCCeeEEEecCCC-CCCcccEEEee
Q 034578           23 NIRSMVDVGGGTGTVL--AEIVKSYPHIKGINFDL-QHVIATAPTHEGVSHVGGDMFD-AIPNADAVFMK   88 (90)
Q Consensus        23 ~~~~vlDvG~G~G~~~--~~l~~~~p~~~~~~~D~-p~~~~~a~~~~rv~~~~~d~~~-~~p~~D~i~l~   88 (90)
                      +..+||=||||.=..-  ..|++...+++++.-++ |+..+.+ +.++++++..+|.. .+..+++|+..
T Consensus        24 ~~~~VLVVGGG~VA~RK~~~Ll~~gA~VtVVap~i~~el~~l~-~~~~i~~~~r~~~~~dl~g~~LViaA   92 (223)
T PRK05562         24 NKIKVLIIGGGKAAFIKGKTFLKKGCYVYILSKKFSKEFLDLK-KYGNLKLIKGNYDKEFIKDKHLIVIA   92 (223)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCCCCHHHHHHH-hCCCEEEEeCCCChHHhCCCcEEEEC
Confidence            3468999999987754  23444444555555566 6655543 35679999887755 45567877753

>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed

Probab=82.94  E-value=4.5  Score=28.82  Aligned_cols=61  Identities=16%  Similarity=0.163  Sum_probs=41.0

Q ss_pred             eEEEecCCchHHHHHHHHHC--CCCeEEEeeh-HHHHHhCCCCCCeeEEEecCCCC-------CCcccEEEee
Q 034578           26 SMVDVGGGTGTVLAEIVKSY--PHIKGINFDL-QHVIATAPTHEGVSHVGGDMFDA-------IPNADAVFMK   88 (90)
Q Consensus        26 ~vlDvG~G~G~~~~~l~~~~--p~~~~~~~D~-p~~~~~a~~~~rv~~~~~d~~~~-------~p~~D~i~l~   88 (90)
                      +++=+|+  |.++..+++..  .+.+++++|. ++.++..++...+.++.||..++       +..+|.+++.
T Consensus         2 ~viIiG~--G~ig~~~a~~L~~~g~~v~vid~~~~~~~~~~~~~~~~~~~gd~~~~~~l~~~~~~~a~~vi~~   72 (453)
T PRK09496          2 KIIIVGA--GQVGYTLAENLSGENNDVTVIDTDEERLRRLQDRLDVRTVVGNGSSPDVLREAGAEDADLLIAV   72 (453)
T ss_pred             EEEEECC--CHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHhhcCEEEEEeCCCCHHHHHHcCCCcCCEEEEe
Confidence            3555555  67777777653  3567899998 77777665544578888998762       2347877753

>PRK06718 precorrin-2 dehydrogenase; Reviewed

Probab=82.91  E-value=8.1  Score=25.03  Aligned_cols=63  Identities=16%  Similarity=0.158  Sum_probs=35.9

Q ss_pred             CCCeEEEecCCchHH--HHHHHHHCCCCeEEEee--h-HHHHHhCCCCCCeeEEEecCCC-CCCcccEEEee
Q 034578           23 NIRSMVDVGGGTGTV--LAEIVKSYPHIKGINFD--L-QHVIATAPTHEGVSHVGGDMFD-AIPNADAVFMK   88 (90)
Q Consensus        23 ~~~~vlDvG~G~G~~--~~~l~~~~p~~~~~~~D--~-p~~~~~a~~~~rv~~~~~d~~~-~~p~~D~i~l~   88 (90)
                      ...++|=||+|.=..  +..|.+.  +.+++.++  . +...+.+. ..++.+....+.+ .+..+|+++..
T Consensus         9 ~~k~vLVIGgG~va~~ka~~Ll~~--ga~V~VIs~~~~~~l~~l~~-~~~i~~~~~~~~~~~l~~adlViaa   77 (202)
T PRK06718          9 SNKRVVIVGGGKVAGRRAITLLKY--GAHIVVISPELTENLVKLVE-EGKIRWKQKEFEPSDIVDAFLVIAA   77 (202)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHC--CCeEEEEcCCCCHHHHHHHh-CCCEEEEecCCChhhcCCceEEEEc
Confidence            357899999974332  2334443  35666665  3 33333332 3567776665554 45668888753

>COG0031 CysK Cysteine synthase [Amino acid transport and metabolism]

Probab=82.65  E-value=4.7  Score=28.06  Aligned_cols=44  Identities=18%  Similarity=0.172  Sum_probs=31.7

Q ss_pred             hhHHHHHhhcccCCCCCCCeEEEecCCchH----HHHHHHHHCCCCeEEEeeh
Q 034578            7 ITMKAFVSHYKVDGFNNIRSMVDVGGGTGT----VLAEIVKSYPHIKGINFDL   55 (90)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~vlDvG~G~G~----~~~~l~~~~p~~~~~~~D~   55 (90)
                      ..++.|.+..+     ..-..+-.|.|||-    ++..|.+++|+++++++|.
T Consensus       157 tT~~EI~~~~~-----g~~d~fVagvGTGGTitGvar~Lk~~~p~i~iv~vdP  204 (300)
T COG0031         157 TTGPEIWQQTD-----GKVDAFVAGVGTGGTITGVARYLKERNPNVRIVAVDP  204 (300)
T ss_pred             hhHHHHHHHhC-----CCCCEEEEeCCcchhHHHHHHHHHhhCCCcEEEEECC
Confidence            44556665555     12345667777776    7788889999999999995

>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional

Probab=82.43  E-value=3.9  Score=27.44  Aligned_cols=48  Identities=15%  Similarity=0.169  Sum_probs=33.5

Q ss_pred             hhhhHHHHHhhcccCCCCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeeh
Q 034578            5 TKITMKAFVSHYKVDGFNNIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDL   55 (90)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~   55 (90)
                      |+.+.+.-.+.+.+  .. ...|+=||+|...+..++..+.++.+++.+|.
T Consensus         9 ~~~~~~~~~~~~~~--~~-~~DVvIVGgGpAGl~AA~~la~~G~~V~liEk   56 (257)
T PRK04176          9 TRAIVEEYFEKLLD--YL-EVDVAIVGAGPSGLTAAYYLAKAGLKVAVFER   56 (257)
T ss_pred             HHHHHHHHHHHHHH--hc-cCCEEEECccHHHHHHHHHHHhCCCeEEEEec
Confidence            44444444444442  22 24588899999888888777778999999995

>KOG2078 consensus tRNA modification enzyme [RNA processing and modification]

Probab=82.24  E-value=0.49  Score=34.55  Aligned_cols=53  Identities=19%  Similarity=0.134  Sum_probs=42.2

Q ss_pred             CCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeeh-HHHHHhCCCC--------CCeeEEEecC
Q 034578           21 FNNIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDL-QHVIATAPTH--------EGVSHVGGDM   75 (90)
Q Consensus        21 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~--------~rv~~~~~d~   75 (90)
                      +.....|+|+-||-|-+++.++++.  +++++.|+ |++++.-+.+        .+++.+..|.
T Consensus       247 fk~gevv~D~FaGvGPfa~Pa~kK~--crV~aNDLNpesik~Lk~ni~lNkv~~~~iei~Nmda  308 (495)
T KOG2078|consen  247 FKPGEVVCDVFAGVGPFALPAAKKG--CRVYANDLNPESIKWLKANIKLNKVDPSAIEIFNMDA  308 (495)
T ss_pred             cCCcchhhhhhcCcCccccchhhcC--cEEEecCCCHHHHHHHHHhccccccchhheeeecccH
Confidence            4567899999999999999998875  99999999 9998876541        3477666553

>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]

Probab=82.19  E-value=2.5  Score=29.51  Aligned_cols=40  Identities=23%  Similarity=0.214  Sum_probs=35.8

Q ss_pred             CeEEEecCCc-hHHHHHHHHHCCCCeEEEeeh-HHHHHhCCC
Q 034578           25 RSMVDVGGGT-GTVLAEIVKSYPHIKGINFDL-QHVIATAPT   64 (90)
Q Consensus        25 ~~vlDvG~G~-G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~   64 (90)
                      .+++=+|+|+ |.++..+++.+...++++.|. +.-++.|++
T Consensus       170 ~~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~~Rl~~A~~  211 (350)
T COG1063         170 GTVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPERLELAKE  211 (350)
T ss_pred             CEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHH
Confidence            4899999994 888899999999999999999 898888876

>cd02190 epsilon_tubulin The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa

Probab=82.02  E-value=3.6  Score=29.34  Aligned_cols=42  Identities=19%  Similarity=0.378  Sum_probs=28.5

Q ss_pred             HHHHhhcccCCCCCCCeEEEecCCch-----HHHHHHHHHCCCCeEEEe
Q 034578           10 KAFVSHYKVDGFNNIRSMVDVGGGTG-----TVLAEIVKSYPHIKGINF   53 (90)
Q Consensus        10 ~~~~~~~~~~~~~~~~~vlDvG~G~G-----~~~~~l~~~~p~~~~~~~   53 (90)
                      +..++..+.  +.+...+-.+|||||     .++..+..+||+.....+
T Consensus        90 r~~~E~cd~--l~gf~i~~sl~GGTGSG~gs~l~e~l~~~y~~~~~~~~  136 (379)
T cd02190          90 RKAAEKCDS--LQSFFILHSLGGGTGSGLGTYVLELLADEFPEVYRFVT  136 (379)
T ss_pred             HHHHhhCcC--cceEEEEeecCCCcchhHHHHHHHHHHHhcCccceEEE
Confidence            344455553  556678999999998     466677778887654444

The epsilon-tubulins which are widespread but not ubiquitous among eukaryotes play a role in basal body/centriole morphogenesis.

>PRK09273 hypothetical protein; Provisional

Probab=81.03  E-value=2.5  Score=27.97  Aligned_cols=41  Identities=17%  Similarity=0.024  Sum_probs=30.2

Q ss_pred             CCeEEEecCCchHHHHHHHHHCCCCeEEEeehHHHHHhCCC
Q 034578           24 IRSMVDVGGGTGTVLAEIVKSYPHIKGINFDLQHVIATAPT   64 (90)
Q Consensus        24 ~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~p~~~~~a~~   64 (90)
                      .....=++||||.=....+.++|++++-.+--|.....+++
T Consensus        63 ~~d~GIliCGTGiG~siAANK~pGIraalc~d~~sA~lar~  103 (211)
T PRK09273         63 AVDFVVTGCGTGQGAMLALNSFPGVVCGYCIDPTDAYLFAQ  103 (211)
T ss_pred             CCCEEEEEcCcHHHHHHHHhcCCCeEEEEeCCHHHHHHHHH
Confidence            34567789999998888888899998644433666666666

>PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases

Probab=80.93  E-value=1.8  Score=26.82  Aligned_cols=40  Identities=23%  Similarity=0.352  Sum_probs=28.3

Q ss_pred             eEEEeeh-HHHHHhCCC-------CCCeeEEEecCCC---CCCc--ccEEEee
Q 034578           49 KGINFDL-QHVIATAPT-------HEGVSHVGGDMFD---AIPN--ADAVFMK   88 (90)
Q Consensus        49 ~~~~~D~-p~~~~~a~~-------~~rv~~~~~d~~~---~~p~--~D~i~l~   88 (90)
                      ++.++|+ +++++.+++       .+|++++..+-..   .+++  .|+++++
T Consensus         1 kVyaFDIQ~~Ai~~T~~rL~~~~~~~~v~li~~sHe~l~~~i~~~~v~~~iFN   53 (140)
T PF06962_consen    1 KVYAFDIQEEAIENTRERLEEAGLEDRVTLILDSHENLDEYIPEGPVDAAIFN   53 (140)
T ss_dssp             EEEEEES-HHHHHHHHHHHHHTT-GSGEEEEES-GGGGGGT--S--EEEEEEE
T ss_pred             CEEEEECHHHHHHHHHHHHHhcCCCCcEEEEECCHHHHHhhCccCCcCEEEEE
Confidence            5789999 999998875       2689998776543   2443  7888876

; PDB: 3EEY_H 3LBY_A 3MTI_A.

>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed

Probab=80.55  E-value=3.6  Score=29.31  Aligned_cols=62  Identities=19%  Similarity=0.186  Sum_probs=41.8

Q ss_pred             CCeEEEecCCchHHHHHHHHHC--CCCeEEEeeh-HHHHHhCCCC-CCeeEEEecCCCC-------CCcccEEEe
Q 034578           24 IRSMVDVGGGTGTVLAEIVKSY--PHIKGINFDL-QHVIATAPTH-EGVSHVGGDMFDA-------IPNADAVFM   87 (90)
Q Consensus        24 ~~~vlDvG~G~G~~~~~l~~~~--p~~~~~~~D~-p~~~~~a~~~-~rv~~~~~d~~~~-------~p~~D~i~l   87 (90)
                      ..+++=+|+  |.++..+++..  .+..++++|. |+.++..++. ..+.++.||..++       +..+|.++.
T Consensus       231 ~~~iiIiG~--G~~g~~l~~~L~~~~~~v~vid~~~~~~~~~~~~~~~~~~i~gd~~~~~~L~~~~~~~a~~vi~  303 (453)
T PRK09496        231 VKRVMIVGG--GNIGYYLAKLLEKEGYSVKLIERDPERAEELAEELPNTLVLHGDGTDQELLEEEGIDEADAFIA  303 (453)
T ss_pred             CCEEEEECC--CHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHCCCCeEEECCCCCHHHHHhcCCccCCEEEE
Confidence            567888887  55555555553  3567899998 8877766543 4677889998762       223787765

>COG2933 Predicted SAM-dependent methyltransferase [General function prediction only]

Probab=80.39  E-value=5.9  Score=27.58  Aligned_cols=72  Identities=21%  Similarity=0.196  Sum_probs=49.3

Q ss_pred             hhHHHHHhhcccCC----CCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeehHHHHHhCCCCCCeeEEEecCCCCCC
Q 034578            7 ITMKAFVSHYKVDG----FNNIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDLQHVIATAPTHEGVSHVGGDMFDAIP   80 (90)
Q Consensus         7 ~~~~~~~~~~~~~~----~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~p~~~~~a~~~~rv~~~~~d~~~~~p   80 (90)
                      .+-+++..-++...    +.+.-.-+|+|..+|...-.|.++  ++.++.+|=..|.+.-...++++....|-|+..|
T Consensus       191 KLEEA~~tfip~~E~~~rL~~~M~avDLGAcPGGWTyqLVkr--~m~V~aVDng~ma~sL~dtg~v~h~r~DGfk~~P  266 (358)
T COG2933         191 KLEEAFHTFIPRDEWDKRLAPGMWAVDLGACPGGWTYQLVKR--NMRVYAVDNGPMAQSLMDTGQVTHLREDGFKFRP  266 (358)
T ss_pred             hHHHHHHHhcChhhhhhhhcCCceeeecccCCCccchhhhhc--ceEEEEeccchhhhhhhcccceeeeeccCccccc
Confidence            34455555554211    233457899999999999999997  7999999965555444446777777777777333

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	90
1kyw_A	365	Crystal Structure Analysis Of Caffeic Acid5-Hydroxy		8e-24
3reo_A	368	Monolignol O-Methyltransferase (Momt) Length = 368		3e-21
1fp1_D	372	Crystal Structure Analysis Of Chalcone O-Methyltran		4e-18
3p9c_A	364	Crystal Structure Of Perennial Ryegrass Lpomt1 Boun		4e-18
1fpq_A	372	Crystal Structure Analysis Of Selenomethionine Subs		6e-17
1fp2_A	352	Crystal Structure Analysis Of Isoflavone O-Methyltr		1e-13
1fpx_A	352	Crystal Structure Analysis Of Selenomethionine Subs		9e-13
2qyo_A	357	Crystal Structure Of Isoflavone O-Methyltransferase		4e-10
1zg3_A	358	Crystal Structure Of The Isoflavanone 4'-O-Methyltr		2e-07
1zga_A	357	Crystal Structure Of Isoflavanone 4'-o-methyltransf		2e-07
1zgj_A	354	Crystal Structure Of Isoflavanone 4'-O-Methyltransf		2e-07
2ip2_A	334	Structure Of The Pyocyanin Biosynthetic Protein Phz		9e-06
1qzz_A	374	Crystal Structure Of Aclacinomycin-10-Hydroxylase (		2e-04
4a6d_A	353	Crystal Structure Of Human N-Acetylserotonin Methyl		2e-04

>pdb|1KYW|A Chain A, Crystal Structure Analysis Of Caffeic Acid5-Hydroxyferulic Acid 35-O-Methyltransferase In Complex With 5- Hydroxyconiferaldehyde Length = 365

Iteration: 1
 Score =  105 bits (261), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 53/88 (60%), Positives = 63/88 (71%), Gaps = 2/88 (2%)
Query: 1   MACTTKITMKAFVSHYKVDGFNNIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDLQHVIA 60
           M+  + ITMK  +  Y   GF  ++S+VDVGGGTG V+  IV  YP IKGINFDL HVI 
Sbjct: 180 MSDHSTITMKKILETYT--GFEGLKSLVDVGGGTGAVINTIVSKYPTIKGINFDLPHVIE 237
Query: 61  TAPTHEGVSHVGGDMFDAIPNADAVFMK 88
            AP++ GV HVGGDMF +IP ADAVFMK
Sbjct: 238 DAPSYPGVEHVGGDMFVSIPKADAVFMK 265

>pdb|3REO|A Chain A, Monolignol O-Methyltransferase (Momt) Length = 368

Iteration: 1
 Score = 97.1 bits (240), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 46/88 (52%), Positives = 58/88 (65%), Gaps = 2/88 (2%)
Query: 1   MACTTKITMKAFVSHYKVDGFNNIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDLQHVIA 60
           M+  + ITMK  +  Y  +GF  + ++VDVGGGTG V + IV  YP I  INFDL HVI 
Sbjct: 183 MSSNSTITMKKILEMY--NGFEGLTTIVDVGGGTGAVASMIVAKYPSINAINFDLPHVIQ 240
Query: 61  TAPTHEGVSHVGGDMFDAIPNADAVFMK 88
            AP   GV H+GGDMFD +P  DA+F+K
Sbjct: 241 DAPAFSGVEHLGGDMFDGVPKGDAIFIK 268

>pdb|1FP1|D Chain D, Crystal Structure Analysis Of Chalcone O-Methyltransferase Length = 372

Iteration: 1
 Score = 86.3 bits (212), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 43/86 (50%), Positives = 54/86 (62%), Gaps = 4/86 (4%)
Query: 3   CTTKITMKAFVSHYKVDGFNNIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDLQHVIATA 62
           C T+  MK  +  Y   GF  I ++VDVGGG+G  L  I+  YP IKGINFDL  VI  A
Sbjct: 193 CATE--MKRMLEIYT--GFEGISTLVDVGGGSGRNLELIISKYPLIKGINFDLPQVIENA 248
Query: 63  PTHEGVSHVGGDMFDAIPNADAVFMK 88
           P   G+ HVGGDMF ++P  DA+ +K
Sbjct: 249 PPLSGIEHVGGDMFASVPQGDAMILK 274

>pdb|3P9C|A Chain A, Crystal Structure Of Perennial Ryegrass Lpomt1 Bound To Sah Length = 364

Iteration: 1
 Score = 86.3 bits (212), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 38/69 (55%), Positives = 48/69 (69%)
Query: 20  GFNNIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDLQHVIATAPTHEGVSHVGGDMFDAI 79
           GF  + ++VDVGGG G  +A I   YP IKG+NFDL HVI+ AP   GV+HVGGDMF  +
Sbjct: 198 GFEGLGTLVDVGGGVGATVAAIAAHYPTIKGVNFDLPHVISEAPQFPGVTHVGGDMFKEV 257
Query: 80  PNADAVFMK 88
           P+ D + MK
Sbjct: 258 PSGDTILMK 266

>pdb|1FPQ|A Chain A, Crystal Structure Analysis Of Selenomethionine Substituted Chalcone O- Methyltransferase Length = 372

Iteration: 1
 Score = 82.4 bits (202), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 37/69 (53%), Positives = 45/69 (65%)
Query: 20  GFNNIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDLQHVIATAPTHEGVSHVGGDMFDAI 79
           GF  I ++VDVGGG+G  L  I+  YP IKGINFDL  VI  AP   G+ HVGGD F ++
Sbjct: 206 GFEGISTLVDVGGGSGRNLELIISKYPLIKGINFDLPQVIENAPPLSGIEHVGGDXFASV 265
Query: 80  PNADAVFMK 88
           P  DA  +K
Sbjct: 266 PQGDAXILK 274

>pdb|1FP2|A Chain A, Crystal Structure Analysis Of Isoflavone O-Methyltransferase Length = 352

Iteration: 1
 Score = 71.2 bits (173), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 32/68 (47%), Positives = 45/68 (66%)
Query: 21  FNNIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDLQHVIATAPTHEGVSHVGGDMFDAIP 80
           F+ + S+VDVGGGTGT    I +++P +K I FD   V+        +++VGGDMF +IP
Sbjct: 186 FDGLESIVDVGGGTGTTAKIICETFPKLKCIVFDRPQVVENLSGSNNLTYVGGDMFTSIP 245
Query: 81  NADAVFMK 88
           NADAV +K
Sbjct: 246 NADAVLLK 253

>pdb|1FPX|A Chain A, Crystal Structure Analysis Of Selenomethionine Substituted Isoflavone O-Methyltransferase Length = 352

Iteration: 1
 Score = 68.6 bits (166), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 31/68 (45%), Positives = 44/68 (64%)
Query: 21  FNNIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDLQHVIATAPTHEGVSHVGGDMFDAIP 80
           F+ + S+VDVGGGTGT    I +++P +K I FD   V+        +++VGGD F +IP
Sbjct: 186 FDGLESIVDVGGGTGTTAKIICETFPKLKCIVFDRPQVVENLSGSNNLTYVGGDXFTSIP 245
Query: 81  NADAVFMK 88
           NADAV +K
Sbjct: 246 NADAVLLK 253

>pdb|2QYO|A Chain A, Crystal Structure Of Isoflavone O-Methyltransferase Homolog In Complex With Biochanin A And Sah Length = 357

Iteration: 1
 Score = 59.7 bits (143), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 27/68 (39%), Positives = 41/68 (60%)
Query: 21  FNNIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDLQHVIATAPTHEGVSHVGGDMFDAIP 80
           F  + S+VDVGGG GT    I +++P +  + FD   V+        +++VGGDMF ++P
Sbjct: 191 FEGLESIVDVGGGNGTTGKIICETFPKLTCVVFDRPKVVENLCGSNNLTYVGGDMFISVP 250
Query: 81  NADAVFMK 88
            ADAV +K
Sbjct: 251 KADAVLLK 258

>pdb|1ZG3|A Chain A, Crystal Structure Of The Isoflavanone 4'-O-Methyltransferase Complexed With Sah And 2,7,4'-Trihydroxyisoflavanone Length = 358

Iteration: 1
 Score = 51.2 bits (121), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 32/68 (47%), Positives = 44/68 (64%)
Query: 21  FNNIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDLQHVIATAPTHEGVSHVGGDMFDAIP 80
           F  + S+VDVGGGTG V   I + +PH+K   FD   V+     +E ++ VGGDMF +IP
Sbjct: 191 FEGLESLVDVGGGTGGVTKLIHEIFPHLKCTVFDQPQVVGNLTGNENLNFVGGDMFKSIP 250
Query: 81  NADAVFMK 88
           +ADAV +K
Sbjct: 251 SADAVLLK 258

>pdb|1ZGA|A Chain A, Crystal Structure Of Isoflavanone 4'-o-methyltransferase Complexed With (+)-6a-hydroxymaackiain Length = 357

Iteration: 1
 Score = 50.8 bits (120), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 32/68 (47%), Positives = 44/68 (64%)
Query: 21  FNNIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDLQHVIATAPTHEGVSHVGGDMFDAIP 80
           F  + S+VDVGGGTG V   I + +PH+K   FD   V+     +E ++ VGGDMF +IP
Sbjct: 190 FEGLESLVDVGGGTGGVTKLIHEIFPHLKCTVFDQPQVVGNLTGNENLNFVGGDMFKSIP 249
Query: 81  NADAVFMK 88
           +ADAV +K
Sbjct: 250 SADAVLLK 257

>pdb|1ZGJ|A Chain A, Crystal Structure Of Isoflavanone 4'-O-Methyltransferase Complexed With (+)-Pisatin Length = 354

Iteration: 1
 Score = 50.8 bits (120), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 32/68 (47%), Positives = 44/68 (64%)
Query: 21  FNNIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDLQHVIATAPTHEGVSHVGGDMFDAIP 80
           F  + S+VDVGGGTG V   I + +PH+K   FD   V+     +E ++ VGGDMF +IP
Sbjct: 187 FEGLESLVDVGGGTGGVTKLIHEIFPHLKCTVFDQPQVVGNLTGNENLNFVGGDMFKSIP 246
Query: 81  NADAVFMK 88
           +ADAV +K
Sbjct: 247 SADAVLLK 254

>pdb|2IP2|A Chain A, Structure Of The Pyocyanin Biosynthetic Protein Phzm Length = 334

Iteration: 1
 Score = 45.4 bits (106), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 23/70 (32%), Positives = 38/70 (54%), Gaps = 7/70 (10%)
Query: 25  RSMVDVGGGTGTVLAEIVKSYPHIKGINFDLQHVIATAPTH-------EGVSHVGGDMFD 77
           RS VDVGGG+G +   I+++ P  +G+  D +  +  A  +       E VS VGGDM  
Sbjct: 169 RSFVDVGGGSGELTKAILQAEPSARGVMLDREGSLGVARDNLSSLLAGERVSLVGGDMLQ 228
Query: 78  AIPNADAVFM 87
            +P+   +++
Sbjct: 229 EVPSNGDIYL 238

>pdb|1QZZ|A Chain A, Crystal Structure Of Aclacinomycin-10-Hydroxylase (Rdmb) In Complex With S-Adensyl-L-Methionine (Sam) Length = 374

Iteration: 1
 Score = 40.8 bits (94), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 28/95 (29%), Positives = 45/95 (47%), Gaps = 11/95 (11%)
Query: 1   MACTTKITMKAFVSHYKVDGFNNIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDL----- 55
           M+C   +  +A    Y    ++ +R ++DVGGG G +LA I    PH++G   +L     
Sbjct: 163 MSCDEDLAYEAPADAYD---WSAVRHVLDVGGGNGGMLAAIALRAPHLRGTLVELAGPAE 219
Query: 56  --QHVIATAPTHEGVSHVGGDMFDAIP-NADAVFM 87
             +   A A   + V+   GD F  +P  AD V +
Sbjct: 220 RARRRFADAGLADRVTVAEGDFFKPLPVTADVVLL 254

>pdb|4A6D|A Chain A, Crystal Structure Of Human N-Acetylserotonin Methyltransferase (Asmt) In Complex With Sam Length = 353

Iteration: 1
 Score = 40.4 bits (93), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 24/64 (37%), Positives = 31/64 (48%), Gaps = 7/64 (10%)
Query: 27  MVDVGGGTGTVLAEIVKSYPHIKGINFDLQHVIATAPTH------EGVSHVGGDMF-DAI 79
           M D+GGG G +  E +  YP  K   FD+  V+ TA  H      E +    GD F D +
Sbjct: 183 MCDLGGGAGALAKECMSLYPGCKITVFDIPEVVWTAKQHFSFQEEEQIDFQEGDFFKDPL 242
Query: 80  PNAD 83
           P AD
Sbjct: 243 PEAD 246

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	90
1fp2_A	352	Isoflavone O-methyltransferase; protein-product co	9e-37
3p9c_A	364	Caffeic acid O-methyltransferase; S-adenosylmethio	6e-36
3reo_A	368	(ISO)eugenol O-methyltransferase; directed evoluti	7e-36
3lst_A	348	CALO1 methyltransferase; calicheamicin, enediyne,	2e-35
1fp1_D	372	Isoliquiritigenin 2'-O-methyltransferase; protein-	5e-35
1tw3_A	360	COMT, carminomycin 4-O-methyltransferase; anthracy	2e-34
3i53_A	332	O-methyltransferase; CO-complex, rossmann-like fol	2e-34
3gwz_A	369	MMCR; methyltransferase, mitomycin, S-adenosyl met	1e-33
1qzz_A	374	RDMB, aclacinomycin-10-hydroxylase; anthracycline,	1e-33
1zg3_A	358	Isoflavanone 4'-O-methyltransferase; rossman fold,	9e-33
1x19_A	359	CRTF-related protein; methyltransferase, bacterioc	3e-31
2ip2_A	334	Probable phenazine-specific methyltransferase; pyo	2e-30
3mcz_A	352	O-methyltransferase; adomet_mtases, S-adenosylmeth	1e-26
2r3s_A	335	Uncharacterized protein; methyltransferase domain,	3e-26
3dp7_A	363	SAM-dependent methyltransferase; structural genomi	2e-23

>1fp2_A Isoflavone O-methyltransferase; protein-product complex; HET: SAH HMO; 1.40A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpx_A* 2qyo_A* Length = 352

 Score =  125 bits (315), Expect = 9e-37
 Identities = 36/88 (40%), Positives = 51/88 (57%), Gaps = 2/88 (2%)

Query: 1   MACTTKITMKAFVSHYKVDGFNNIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDLQHVIA 60
           MA  +K+   A         F+ + S+VDVGGGTGT    I +++P +K I FD   V+ 
Sbjct: 168 MASDSKLINLALRDCD--FVFDGLESIVDVGGGTGTTAKIICETFPKLKCIVFDRPQVVE 225

Query: 61  TAPTHEGVSHVGGDMFDAIPNADAVFMK 88
                  +++VGGDMF +IPNADAV +K
Sbjct: 226 NLSGSNNLTYVGGDMFTSIPNADAVLLK 253

>3p9c_A Caffeic acid O-methyltransferase; S-adenosylmethionine dependent O-methyltransferase; HET: SAH; 1.80A {Lolium perenne} PDB: 3p9i_A* 3p9k_A* Length = 364

 Score =  123 bits (310), Expect = 6e-36
 Identities = 42/88 (47%), Positives = 54/88 (61%), Gaps = 2/88 (2%)

Query: 1   MACTTKITMKAFVSHYKVDGFNNIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDLQHVIA 60
           M   + I  K  +  Y   GF  + ++VDVGGG G  +A I   YP IKG+NFDL HVI+
Sbjct: 181 MKNHSIIITKKLLELY--HGFEGLGTLVDVGGGVGATVAAIAAHYPTIKGVNFDLPHVIS 238

Query: 61  TAPTHEGVSHVGGDMFDAIPNADAVFMK 88
            AP   GV+HVGGDMF  +P+ D + MK
Sbjct: 239 EAPQFPGVTHVGGDMFKEVPSGDTILMK 266

>3reo_A (ISO)eugenol O-methyltransferase; directed evolution, saturation mutagenesis, regioselectivity transferase; HET: SAH EUG; 1.90A {Clarkia breweri} PDB: 1kyz_A* 1kyw_A* Length = 368

 Score =  123 bits (310), Expect = 7e-36
 Identities = 46/88 (52%), Positives = 58/88 (65%), Gaps = 2/88 (2%)

Query: 1   MACTTKITMKAFVSHYKVDGFNNIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDLQHVIA 60
           M+  + ITMK  +  Y  +GF  + ++VDVGGGTG V + IV  YP I  INFDL HVI 
Sbjct: 183 MSSNSTITMKKILEMY--NGFEGLTTIVDVGGGTGAVASMIVAKYPSINAINFDLPHVIQ 240

Query: 61  TAPTHEGVSHVGGDMFDAIPNADAVFMK 88
            AP   GV H+GGDMFD +P  DA+F+K
Sbjct: 241 DAPAFSGVEHLGGDMFDGVPKGDAIFIK 268

>3lst_A CALO1 methyltransferase; calicheamicin, enediyne, SAH, STRU genomics, PSI-2, protein structure initiative; HET: SAH; 2.40A {Micromonospora echinospora} Length = 348

 Score =  122 bits (307), Expect = 2e-35
 Identities = 21/93 (22%), Positives = 35/93 (37%), Gaps = 8/93 (8%)

Query: 1   MACTTKITMKAFVSHYKVDGFNNIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDLQHVIA 60
           M   +               F    ++ DVGGG G  L  +++ +P ++G+  D   V+A
Sbjct: 165 METVSAAEHLILARAG---DFPATGTVADVGGGRGGFLLTVLREHPGLQGVLLDRAEVVA 221

Query: 61  TAPTHEG-----VSHVGGDMFDAIPNADAVFMK 88
                          V GD    +P+AD   +K
Sbjct: 222 RHRLDAPDVAGRWKVVEGDFLREVPHADVHVLK 254

>1fp1_D Isoliquiritigenin 2'-O-methyltransferase; protein-substrate, protein-product complex; HET: SAH HCC; 1.82A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpq_A* Length = 372

 Score =  121 bits (304), Expect = 5e-35
 Identities = 42/88 (47%), Positives = 52/88 (59%), Gaps = 2/88 (2%)

Query: 1   MACTTKITMKAFVSHYKVDGFNNIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDLQHVIA 60
           M       MK  +  Y   GF  I ++VDVGGG+G  L  I+  YP IKGINFDL  VI 
Sbjct: 189 MVDVCATEMKRMLEIY--TGFEGISTLVDVGGGSGRNLELIISKYPLIKGINFDLPQVIE 246

Query: 61  TAPTHEGVSHVGGDMFDAIPNADAVFMK 88
            AP   G+ HVGGDMF ++P  DA+ +K
Sbjct: 247 NAPPLSGIEHVGGDMFASVPQGDAMILK 274

>1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate, tailoring enzyme, polyketide, S-adenosyl-L-homocystein; HET: SAH ERT; 2.35A {Streptomyces peucetius} SCOP: a.4.5.29 c.66.1.12 PDB: 1tw2_A* Length = 360

 Score =  119 bits (300), Expect = 2e-34
 Identities = 27/96 (28%), Positives = 46/96 (47%), Gaps = 11/96 (11%)

Query: 1   MACTTKITMKAFVSHYKVDGFNNIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDLQHVIA 60
           +AC   +   A  + Y    + N+R ++DVGGG G   A I +  PH+     ++   + 
Sbjct: 164 LACDQDVAFDAPAAAY---DWTNVRHVLDVGGGKGGFAAAIARRAPHVSATVLEMAGTVD 220

Query: 61  TAPTH-------EGVSHVGGDMFDAIPN-ADAVFMK 88
           TA ++       + V  V GD F+ +P  ADA+ + 
Sbjct: 221 TARSYLKDEGLSDRVDVVEGDFFEPLPRKADAIILS 256

>3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A* 3i5u_A* 3i64_A* Length = 332

 Score =  118 bits (298), Expect = 2e-34
 Identities = 21/96 (21%), Positives = 39/96 (40%), Gaps = 11/96 (11%)

Query: 1   MACTTKITMKAFVSHYKVDGFNNIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDLQHVIA 60
           M+   ++      + Y    +  +  +VDVGGG+G +L+ ++ ++  + G   DLQ   +
Sbjct: 150 MSHHLELDYTGIAAKYD---WAALGHVVDVGGGSGGLLSALLTAHEDLSGTVLDLQGPAS 206

Query: 61  TAPTH-------EGVSHVGGDMFDAIP-NADAVFMK 88
            A               V G  FD +P  A    + 
Sbjct: 207 AAHRRFLDTGLSGRAQVVVGSFFDPLPAGAGGYVLS 242

>3gwz_A MMCR; methyltransferase, mitomycin, S-adenosyl methionine, transferase; HET: MSE SAH; 1.91A {Streptomyces lavendulae} PDB: 3gxo_A* Length = 369

 Score =  117 bits (295), Expect = 1e-33
 Identities = 22/96 (22%), Positives = 41/96 (42%), Gaps = 11/96 (11%)

Query: 1   MACTTKITMKAFVSHYKVDGFNNIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDLQHVIA 60
           M   +        + Y    F+   + VD+GGG G+++A ++ ++P ++G   +   V  
Sbjct: 183 MGSVSLTEAGQVAAAYD---FSGAATAVDIGGGRGSLMAAVLDAFPGLRGTLLERPPVAE 239

Query: 61  TAPTH-------EGVSHVGGDMFDAIP-NADAVFMK 88
            A          +    + GD F+ IP  AD   +K
Sbjct: 240 EARELLTGRGLADRCEILPGDFFETIPDGADVYLIK 275

>1qzz_A RDMB, aclacinomycin-10-hydroxylase; anthracycline, methyltransferase, polyketide, tailoring enzymes, structural proteomics in E spine; HET: SAM; 2.10A {Streptomyces purpurascens} SCOP: a.4.5.29 c.66.1.12 PDB: 1r00_A* 1xds_A* 1xdu_A* Length = 374

 Score =  117 bits (295), Expect = 1e-33
 Identities = 27/96 (28%), Positives = 43/96 (44%), Gaps = 11/96 (11%)

Query: 1   MACTTKITMKAFVSHYKVDGFNNIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDLQHVIA 60
           M+C   +  +A    Y    ++ +R ++DVGGG G +LA I    PH++G   +L     
Sbjct: 163 MSCDEDLAYEAPADAYD---WSAVRHVLDVGGGNGGMLAAIALRAPHLRGTLVELAGPAE 219

Query: 61  TAPTH-------EGVSHVGGDMFDAIP-NADAVFMK 88
            A          + V+   GD F  +P  AD V + 
Sbjct: 220 RARRRFADAGLADRVTVAEGDFFKPLPVTADVVLLS 255

>1zg3_A Isoflavanone 4'-O-methyltransferase; rossman fold, plant Pro transferase; HET: 2HI SAH; 2.35A {Medicago truncatula} PDB: 1zga_A* 1zhf_A* 1zgj_A* Length = 358

 Score =  114 bits (288), Expect = 9e-33
 Identities = 34/88 (38%), Positives = 50/88 (56%), Gaps = 2/88 (2%)

Query: 1   MACTTKITMKAFVSHYKVDGFNNIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDLQHVIA 60
           MA  +++       +     F  + S+VDVGGGTG V   I + +PH+K   FD   V+ 
Sbjct: 173 MASDSRMFKLVLQENK--RVFEGLESLVDVGGGTGGVTKLIHEIFPHLKCTVFDQPQVVG 230

Query: 61  TAPTHEGVSHVGGDMFDAIPNADAVFMK 88
               +E ++ VGGDMF +IP+ADAV +K
Sbjct: 231 NLTGNENLNFVGGDMFKSIPSADAVLLK 258

>1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll, BCHU, SAM, SAH, adenosylmethyonine, S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium tepidum} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A* Length = 359

 Score =  110 bits (278), Expect = 3e-31
 Identities = 20/96 (20%), Positives = 41/96 (42%), Gaps = 11/96 (11%)

Query: 1   MACTTKITMKAFVSHYKVDGFNNIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDLQHVIA 60
                K  ++  +   K    + ++ M+DVGGG G + A ++K +P +     +L   I 
Sbjct: 171 HRSNAKFAIQLLLEEAK---LDGVKKMIDVGGGIGDISAAMLKHFPELDSTILNLPGAID 227

Query: 61  TAPTH-------EGVSHVGGDMF-DAIPNADAVFMK 88
               +       + +  +  D++ ++ P ADAV   
Sbjct: 228 LVNENAAEKGVADRMRGIAVDIYKESYPEADAVLFC 263

>2ip2_A Probable phenazine-specific methyltransferase; pyocyanin, phenazine-1-carboxy PHZM; 1.80A {Pseudomonas aeruginosa} Length = 334

 Score =  108 bits (272), Expect = 2e-30
 Identities = 27/96 (28%), Positives = 41/96 (42%), Gaps = 13/96 (13%)

Query: 1   MACTTKITMKAFVSHYKVDGFNNIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDLQHVIA 60
           M  +  +            G    RS VDVGGG+G +   I+++ P  +G+  D +  + 
Sbjct: 150 MKASN-LAFHEIPRLLDFRG----RSFVDVGGGSGELTKAILQAEPSARGVMLDREGSLG 204

Query: 61  TAPTH-------EGVSHVGGDMFDAIP-NADAVFMK 88
            A  +       E VS VGGDM   +P N D   + 
Sbjct: 205 VARDNLSSLLAGERVSLVGGDMLQEVPSNGDIYLLS 240

>3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent methyltransfer structural genomics, PSI-2; HET: MSE; 1.90A {Burkholderia thailandensis} Length = 352

 Score = 98.6 bits (246), Expect = 1e-26
 Identities = 21/99 (21%), Positives = 38/99 (38%), Gaps = 14/99 (14%)

Query: 1   MACTTKITMKAFVSHYKVDGFNNIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDLQHVIA 60
           M   ++  +           F   R+++D+ GG GT LA++++ +P + G  +DL     
Sbjct: 160 MVRLSQPMVDVVSELG---VFARARTVIDLAGGHGTYLAQVLRRHPQLTGQIWDLPTTRD 216

Query: 61  TAPTH-------EGVSHVGGDMFDAIP----NADAVFMK 88
            A            V     ++ DA       AD V + 
Sbjct: 217 AARKTIHAHDLGGRVEFFEKNLLDARNFEGGAADVVMLN 255

>2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.15A {Nostoc punctiforme} Length = 335

 Score = 97.4 bits (243), Expect = 3e-26
 Identities = 11/97 (11%), Positives = 29/97 (29%), Gaps = 10/97 (10%)

Query: 1   MACTTKITMKAFVSHYKVDGFNNIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDLQHVIA 60
           M+       +        +    ++ ++D+    G     + +  P+ +    D   V+ 
Sbjct: 144 MSPMMANPAQLIAQLVNENKIEPLK-VLDISASHGLFGIAVAQHNPNAEIFGVDWASVLE 202

Query: 61  TAPTH-------EGVSHVGGDMFDA--IPNADAVFMK 88
            A  +            + G  F+     + D V + 
Sbjct: 203 VAKENARIQGVASRYHTIAGSAFEVDYGNDYDLVLLP 239

>3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research; 2.33A {Bacteroides vulgatus} Length = 363

 Score = 90.1 bits (224), Expect = 2e-23
 Identities = 15/99 (15%), Positives = 33/99 (33%), Gaps = 14/99 (14%)

Query: 1   MACTTKITMKAFVSHYKVDGFNNIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDLQHVIA 60
               +  +    +        ++ + ++D+GG TG    + V+    ++    DL   + 
Sbjct: 160 DHFYSDQSFGKALEIV---FSHHPKRLLDIGGNTGKWATQCVQYNKEVEVTIVDLPQQLE 216

Query: 61  TAPTH-------EGVSHVGGDMFDAIP----NADAVFMK 88
                       E +   G ++ D         DAV+M 
Sbjct: 217 MMRKQTAGLSGSERIHGHGANLLDRDVPFPTGFDAVWMS 255

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	90
4a6d_A	353	Hydroxyindole O-methyltransferase; melatonin, circ	99.82
3p9c_A	364	Caffeic acid O-methyltransferase; S-adenosylmethio	99.78
3reo_A	368	(ISO)eugenol O-methyltransferase; directed evoluti	99.78
1fp1_D	372	Isoliquiritigenin 2'-O-methyltransferase; protein-	99.73
1fp2_A	352	Isoflavone O-methyltransferase; protein-product co	99.73
1zg3_A	358	Isoflavanone 4'-O-methyltransferase; rossman fold,	99.71
3gwz_A	369	MMCR; methyltransferase, mitomycin, S-adenosyl met	99.71
3lst_A	348	CALO1 methyltransferase; calicheamicin, enediyne,	99.71
3i53_A	332	O-methyltransferase; CO-complex, rossmann-like fol	99.7
1qzz_A	374	RDMB, aclacinomycin-10-hydroxylase; anthracycline,	99.66
2ip2_A	334	Probable phenazine-specific methyltransferase; pyo	99.66
1tw3_A	360	COMT, carminomycin 4-O-methyltransferase; anthracy	99.64
1x19_A	359	CRTF-related protein; methyltransferase, bacterioc	99.64
3dp7_A	363	SAM-dependent methyltransferase; structural genomi	99.62
2r3s_A	335	Uncharacterized protein; methyltransferase domain,	99.61
3mcz_A	352	O-methyltransferase; adomet_mtases, S-adenosylmeth	99.6
4gek_A	261	TRNA (CMO5U34)-methyltransferase; structural genom	99.57
3ege_A	261	Putative methyltransferase from antibiotic biosyn	99.53
4hg2_A	257	Methyltransferase type 11; structural genomics, PS	99.51
3dtn_A	234	Putative methyltransferase MM_2633; structural gen	99.5
3ujc_A	266	Phosphoethanolamine N-methyltransferase; parasite;	99.5
2p35_A	259	Trans-aconitate 2-methyltransferase; SAM dependent	99.48
1nkv_A	256	Hypothetical protein YJHP; structural genomics, PS	99.48
3e05_A	204	Precorrin-6Y C5,15-methyltransferase (decarboxyla;	99.47
3dlc_A	219	Putative S-adenosyl-L-methionine-dependent methylt	99.47
1nv8_A	284	HEMK protein; class I adoMet-dependent methyltrans	99.46
3f4k_A	257	Putative methyltransferase; structural genomics, P	99.46
3jwg_A	219	HEN1, methyltransferase type 12; 1.90A {Clostridiu	99.45
3bus_A	273	REBM, methyltransferase; rebeccamycin synthesis; H	99.45
3kr9_A	225	SAM-dependent methyltransferase; class I rossmann-	99.45
3jwh_A	217	HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena	99.45
3kkz_A	267	Uncharacterized protein Q5LES9; putative methyltra	99.44
3mgg_A	276	Methyltransferase; NYSGXRC, PSI-II, protein struct	99.44
3gu3_A	284	Methyltransferase; alpha-beta protein, structural	99.44
3g07_A	292	7SK snRNA methylphosphate capping enzyme; structur	99.44
1vl5_A	260	Unknown conserved protein BH2331; putative methylt	99.43
2o57_A	297	Putative sarcosine dimethylglycine methyltransfera	99.42
3dh0_A	219	SAM dependent methyltransferase; cystal structure,	99.41
2yxd_A	183	Probable cobalt-precorrin-6Y C(15)-methyltransfer	99.41
3lec_A	230	NADB-rossmann superfamily protein; PSI, MCSG, stru	99.41
3gnl_A	244	Uncharacterized protein, DUF633, LMOF2365_1472; st	99.41
3uwp_A	438	Histone-lysine N-methyltransferase, H3 lysine-79;	99.4
1pjz_A	203	Thiopurine S-methyltransferase; polymorphism, S-ad	99.4
3ccf_A	279	Cyclopropane-fatty-acyl-phospholipid synthase; YP_	99.4
3vc1_A	312	Geranyl diphosphate 2-C-methyltransferase; rossman	99.4
2b3t_A	276	Protein methyltransferase HEMK; translation termin	99.4
1ve3_A	227	Hypothetical protein PH0226; dimer, riken structur	99.39
3hm2_A	178	Precorrin-6Y C5,15-methyltransferase; alpha-beta-s	99.39
1xxl_A	239	YCGJ protein; structural genomics, protein structu	99.39
3q87_B	170	N6 adenine specific DNA methylase; SAM-methyltrans	99.39
3hem_A	302	Cyclopropane-fatty-acyl-phospholipid synthase 2; p	99.39
3ou2_A	218	SAM-dependent methyltransferase; O-methyltransfera	99.38
4dcm_A	375	Ribosomal RNA large subunit methyltransferase G; 2	99.38
4dzr_A	215	Protein-(glutamine-N5) methyltransferase, release	99.37
3g5l_A	253	Putative S-adenosylmethionine dependent methyltran	99.37
1jsx_A	207	Glucose-inhibited division protein B; methyltransf	99.37
3g5t_A	299	Trans-aconitate 3-methyltransferase; structural ge	99.37
3mb5_A	255	SAM-dependent methyltransferase; RNA methyltransfe	99.36
1yzh_A	214	TRNA (guanine-N(7)-)-methyltransferase; alpha-beta	99.36
3njr_A	204	Precorrin-6Y methylase; methyltransferase, decarbo	99.36
1xtp_A	254	LMAJ004091AAA; SGPP, structural genomics, PSI, pro	99.35
2h00_A	254	Methyltransferase 10 domain containing protein; st	99.35
1kpg_A	287	CFA synthase;, cyclopropane-fatty-acyl-phospholipi	99.34
3l8d_A	242	Methyltransferase; structural genomics, PSI, nysgr	99.34
3hnr_A	220	Probable methyltransferase BT9727_4108; structural	99.34
3mti_A	185	RRNA methylase; SAM-dependent, PSI, MCSG, structur	99.34
3dxy_A	218	TRNA (guanine-N(7)-)-methyltransferase; rossmann f	99.33
2p7i_A	250	Hypothetical protein; putative methyltransferase,	99.33
1fbn_A	230	MJ fibrillarin homologue; MJ proteins, ribosomal R	99.33
3ofk_A	216	Nodulation protein S; NODS, N-methyltransferase, S	99.32
3ntv_A	232	MW1564 protein; rossmann fold, putative methyltran	99.32
1nt2_A	210	Fibrillarin-like PRE-rRNA processing protein; adeM	99.32
3bkx_A	275	SAM-dependent methyltransferase; YP_807781.1, cycl	99.32
3mq2_A	218	16S rRNA methyltransferase; methyltranferase, ribo	99.31
1yb2_A	275	Hypothetical protein TA0852; structural genomics,	99.31
3dli_A	240	Methyltransferase; PSI-II, NYSGXRC, structural gen	99.31
2fk8_A	318	Methoxy mycolic acid synthase 4; S-adenosylmethion	99.31
3fzg_A	200	16S rRNA methylase; methyltransferase, plasmid, tr	99.31
4fsd_A	383	Arsenic methyltransferase; rossmann fold; 1.75A {C	99.31
3g89_A	249	Ribosomal RNA small subunit methyltransferase G; 1	99.3
3ggd_A	245	SAM-dependent methyltransferase; YP_325210.1, stru	99.3
1zq9_A	285	Probable dimethyladenosine transferase; SGC, struc	99.3
3lbf_A	210	Protein-L-isoaspartate O-methyltransferase; modifi	99.3
2pwy_A	258	TRNA (adenine-N(1)-)-methyltransferase; mtase, ado	99.3
2xvm_A	199	Tellurite resistance protein TEHB; antibiotic resi	99.3
2yqz_A	263	Hypothetical protein TTHA0223; RNA methyltransfera	99.3
3b3j_A	480	Histone-arginine methyltransferase CARM1; protein	99.3
2yxe_A	215	Protein-L-isoaspartate O-methyltransferase; rossma	99.3
3pfg_A	263	N-methyltransferase; N,N-dimethyltransferase, SAM	99.3
3g2m_A	299	PCZA361.24; SAM-dependent methyltransferase, glyco	99.29
2ozv_A	260	Hypothetical protein ATU0636; structural genomics,	99.29
3m33_A	226	Uncharacterized protein; structural genomics, PSI-	99.29
2fca_A	213	TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bac	99.29
2qe6_A	274	Uncharacterized protein TFU_2867; putative methylt	99.29
1dus_A	194	MJ0882; hypothetical protein, methanococcus jannas	99.29
1xdz_A	240	Methyltransferase GIDB; MCSG, protein structure in	99.28
2pjd_A	343	Ribosomal RNA small subunit methyltransferase C; g	99.28
3grz_A	205	L11 mtase, ribosomal protein L11 methyltransferase	99.28
1jg1_A	235	PIMT;, protein-L-isoaspartate O-methyltransferase;	99.28
1wzn_A	252	SAM-dependent methyltransferase; structural genomi	99.27
2esr_A	177	Methyltransferase; structural genomics, hypothetic	99.27
3ocj_A	305	Putative exported protein; structural genomics, PS	99.27
3gru_A	295	Dimethyladenosine transferase; rossman fold, ribos	99.27
3tma_A	354	Methyltransferase; thump domain; 2.05A {Thermus th	99.27
1o54_A	277	SAM-dependent O-methyltransferase; TM0748, structu	99.27
2fhp_A	187	Methylase, putative; alpha-beta-alpha sandwich, st	99.27
3bkw_A	243	MLL3908 protein, S-adenosylmethionine dependent me	99.26
2gb4_A	252	Thiopurine S-methyltransferase; 18204406, thiopuri	99.26
3eey_A	197	Putative rRNA methylase; rRNA methylation, S-adeno	99.26
3fpf_A	298	Mtnas, putative uncharacterized protein; thermonic	99.26
2ex4_A	241	Adrenal gland protein AD-003; methyltransferase, s	99.25
3ckk_A	235	TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-	99.25
3gjy_A	317	Spermidine synthase; APC62791, structural genomics	99.25
4htf_A	285	S-adenosylmethionine-dependent methyltransferase;	99.25
1vbf_A	231	231AA long hypothetical protein-L-isoaspartate O-	99.24
3e23_A	211	Uncharacterized protein RPA2492; alpha-beta protei	99.24
1o9g_A	250	RRNA methyltransferase; antibiotic resistance, Se-	99.24
3iv6_A	261	Putative Zn-dependent alcohol dehydrogenase; alpha	99.24
1g8a_A	227	Fibrillarin-like PRE-rRNA processing protein; rRNA	99.24
3bxo_A	239	N,N-dimethyltransferase; desosamine, sugar, carboh	99.24
3m70_A	286	Tellurite resistance protein TEHB homolog; structu	99.24
2ipx_A	233	RRNA 2'-O-methyltransferase fibrillarin; FBL, stru	99.24
2pxx_A	215	Uncharacterized protein MGC2408; structural genomi	99.24
3h2b_A	203	SAM-dependent methyltransferase; alpha-beta protei	99.24
1p91_A	269	Ribosomal RNA large subunit methyltransferase A; R	99.23
3lpm_A	259	Putative methyltransferase; structural genomics, p	99.23
3ftd_A	249	Dimethyladenosine transferase; KSGA, rossmann-like	99.23
2bm8_A	236	Cephalosporin hydroxylase CMCI; cephamycin biosynt	99.23
2plw_A	201	Ribosomal RNA methyltransferase, putative; malaria	99.23
1qam_A	244	ERMC' methyltransferase; rRNA methyltransferase ER	99.23
2h1r_A	299	Dimethyladenosine transferase, putative; SGC toron	99.23
2fyt_A	340	Protein arginine N-methyltransferase 3; structural	99.23
3dr5_A	221	Putative O-methyltransferase; Q8NRD3, CGL1119, PF0	99.23
3lcc_A	235	Putative methyl chloride transferase; halide methy	99.23
1l3i_A	192	Precorrin-6Y methyltransferase/putative decarboxyl	99.22
3e8s_A	227	Putative SAM dependent methyltransferase; NP_74470	99.22
3orh_A	236	Guanidinoacetate N-methyltransferase; structura ge	99.22
3sm3_A	235	SAM-dependent methyltransferases; NESG, structural	99.22
3q7e_A	349	Protein arginine N-methyltransferase 1; HET: SAH;	99.22
3htx_A	950	HEN1; HEN1, small RNA methyltransferase, protein-R	99.22
1m6y_A	301	S-adenosyl-methyltransferase MRAW; SAM-dependent m	99.22
3p9n_A	189	Possible methyltransferase (methylase); RV2966C, a	99.22
3i9f_A	170	Putative type 11 methyltransferase; structural gen	99.22
3adn_A	294	Spermidine synthase; aminopropyltransferase, polya	99.22
1dl5_A	317	Protein-L-isoaspartate O-methyltransferase; isoasp	99.21
3uzu_A	279	Ribosomal RNA small subunit methyltransferase A; s	99.21
3thr_A	293	Glycine N-methyltransferase; GNMT, folate, methylt	99.21
2gpy_A	233	O-methyltransferase; structural genomics, PSI, pro	99.2
1zx0_A	236	Guanidinoacetate N-methyltransferase; structural g	99.2
3duw_A	223	OMT, O-methyltransferase, putative; alternating of	99.2
3u81_A	221	Catechol O-methyltransferase; neurotransmitter deg	99.2
2y1w_A	348	Histone-arginine methyltransferase CARM1; histone	99.2
3gdh_A	241	Trimethylguanosine synthase homolog; M7G, CAP, dim	99.2
3id6_C	232	Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase;	99.2
3tm4_A	373	TRNA (guanine N2-)-methyltransferase TRM14; rossma	99.2
3tfw_A	248	Putative O-methyltransferase; PSI-biology, nysgrc,	99.19
2b25_A	336	Hypothetical protein; structural genomics, methyl	99.19
1u2z_A	433	Histone-lysine N-methyltransferase, H3 lysine-79 s	99.19
3d2l_A	243	SAM-dependent methyltransferase; ZP_00538691.1, st	99.19
1ne2_A	200	Hypothetical protein TA1320; structural genomics,	99.18
3tr6_A	225	O-methyltransferase; cellular processes; HET: SAH;	99.18
2frn_A	278	Hypothetical protein PH0793; structural genomics,	99.18
2ift_A	201	Putative methylase HI0767; NESG, Y767_haein, struc	99.18
3cgg_A	195	SAM-dependent methyltransferase; NP_600671.1, meth	99.17
2p8j_A	209	S-adenosylmethionine-dependent methyltransferase;	99.17
3k0b_A	393	Predicted N6-adenine-specific DNA methylase; methy	99.17
2ih2_A	421	Modification methylase TAQI; DNA, DNA methyltransf	99.17
1af7_A	274	Chemotaxis receptor methyltransferase CHER; chemot	99.17
3fut_A	271	Dimethyladenosine transferase; methyltransferase,	99.17
1i9g_A	280	Hypothetical protein RV2118C; mtase, adoMet, cryst	99.16
3evz_A	230	Methyltransferase; NYSGXRC, NEW YORK SGX research	99.16
1g6q_1	328	HnRNP arginine N-methyltransferase; SAM-binding do	99.16
3a27_A	272	TYW2, uncharacterized protein MJ1557; wybutosine m	99.16
3r0q_C	376	Probable protein arginine N-methyltransferase 4.2;	99.16
2vdv_E	246	TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl	99.16
1ws6_A	171	Methyltransferase; structural genomics, riken stru	99.16
3ldu_A	385	Putative methylase; structural genomics, PSI-2, pr	99.16
1wy7_A	207	Hypothetical protein PH1948; seven-stranded beta s	99.15
1y8c_A	246	S-adenosylmethionine-dependent methyltransferase;	99.15
2kw5_A	202	SLR1183 protein; structural genomics, northeast st	99.15
2yvl_A	248	TRMI protein, hypothetical protein; tRNA, methyltr	99.14
1uwv_A	433	23S rRNA (uracil-5-)-methyltransferase RUMA; RNA m	99.14
1ri5_A	298	MRNA capping enzyme; methyltransferase, M7G, messe	99.14
3cc8_A	230	Putative methyltransferase; structural genomics, j	99.14
3ldg_A	384	Putative uncharacterized protein SMU.472; YPSC, me	99.13
2gs9_A	211	Hypothetical protein TT1324; methyl transferase, s	99.13
2pbf_A	227	Protein-L-isoaspartate O-methyltransferase beta-A	99.13
1ej0_A	180	FTSJ; methyltransferase, adoMet, adenosyl methioni	99.13
2fpo_A	202	Methylase YHHF; structural genomics, putative meth	99.13
3tqs_A	255	Ribosomal RNA small subunit methyltransferase A; p	99.12
3c3p_A	210	Methyltransferase; NP_951602.1, structural genomic	99.12
3r3h_A	242	O-methyltransferase, SAM-dependent; structural gen	99.12
2hnk_A	239	SAM-dependent O-methyltransferase; modified rossma	99.12
4df3_A	233	Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase;	99.11
3p2e_A	225	16S rRNA methylase; methyltransferase, transferase	99.11
1iy9_A	275	Spermidine synthase; rossmann fold, structural gen	99.11
2nxc_A	254	L11 mtase, ribosomal protein L11 methyltransferase	99.1
1xj5_A	334	Spermidine synthase 1; structural genomics, protei	99.1
3frh_A	253	16S rRNA methylase; methyltransferase domain, heli	99.09
2pt6_A	321	Spermidine synthase; transferase, structural genom	99.09
3dou_A	191	Ribosomal RNA large subunit methyltransferase J; c	99.09
1r18_A	227	Protein-L-isoaspartate(D-aspartate)-O-methyltrans;	99.09
2avn_A	260	Ubiquinone/menaquinone biosynthesis methyltransfe	99.09
1sui_A	247	Caffeoyl-COA O-methyltransferase; rossmann fold, p	99.09
2qm3_A	373	Predicted methyltransferase; putative methyltransf	99.07
3lcv_B	281	Sisomicin-gentamicin resistance methylase SGM; ant	99.07
4hc4_A	376	Protein arginine N-methyltransferase 6; HRMT1L6, S	99.07
2avd_A	229	Catechol-O-methyltransferase; structural genomics,	99.07
1qyr_A	252	KSGA, high level kasugamycin resistance protein, S	99.07
3bgv_A	313	MRNA CAP guanine-N7 methyltransferase; alternative	99.06
1i1n_A	226	Protein-L-isoaspartate O-methyltransferase; S-aden	99.06
3dmg_A	381	Probable ribosomal RNA small subunit methyltransf;	99.05
2cmg_A	262	Spermidine synthase; transferase, putrescine amino	99.05
1inl_A	296	Spermidine synthase; beta-barrel, rossman fold, st	99.05
1yub_A	245	Ermam, rRNA methyltransferase; MLS antibiotics; NM	99.04
2o07_A	304	Spermidine synthase; structural genomics, structur	99.03
3c3y_A	237	Pfomt, O-methyltransferase; plant secondary metabo	99.03
1mjf_A	281	Spermidine synthase; spermidine synthetase, struct	99.03
3bwc_A	304	Spermidine synthase; SAM, SGPP, structura genomics	99.03
1uir_A	314	Polyamine aminopropyltransferase; spermidien synth	99.02
3bzb_A	281	Uncharacterized protein; RED ALGA, protein structu	99.0
2nyu_A	196	Putative ribosomal RNA methyltransferase 2; SAM, s	99.0
2b2c_A	314	Spermidine synthase; beta-alpha, transferase; 2.50	99.0
2i7c_A	283	Spermidine synthase; transferase, structural genom	98.99
3cbg_A	232	O-methyltransferase; cyanobacterium; HET: SAH FER	98.99
2i62_A	265	Nicotinamide N-methyltransferase; structural genom	98.99
4azs_A	569	Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15	98.97
2oxt_A	265	Nucleoside-2'-O-methyltransferase; flavivirus, vir	98.97
2wa2_A	276	Non-structural protein 5; transferase, S-adenosyl-	98.97
1ixk_A	315	Methyltransferase; open beta sheet; 1.90A {Pyrococ	98.96
1vlm_A	219	SAM-dependent methyltransferase; possible histamin	98.95
3k6r_A	278	Putative transferase PH0793; structural genomics,	98.95
3ajd_A	274	Putative methyltransferase MJ0026; tRNA, M5C, ross	98.93
2igt_A	332	SAM dependent methyltransferase; alpha-beta sandwi	98.92
2jjq_A	425	Uncharacterized RNA methyltransferase pyrab10780;	98.92
2f8l_A	344	Hypothetical protein LMO1582; structural genomics,	98.89
4e2x_A	416	TCAB9; kijanose, tetronitrose, tetradeoxy sugar, s	98.89
2g72_A	289	Phenylethanolamine N-methyltransferase; HET: SAM F	98.89
2r6z_A	258	UPF0341 protein in RSP 3' region; alpha-beta prote	98.89
2yx1_A	336	Hypothetical protein MJ0883; methyl transferase, t	98.87
2aot_A	292	HMT, histamine N-methyltransferase; classic methyl	98.86
2a14_A	263	Indolethylamine N-methyltransferase; SGC,INMT, str	98.85
2zfu_A	215	Nucleomethylin, cerebral protein 1; nucleolar prot	98.84
3v97_A	703	Ribosomal RNA large subunit methyltransferase L; Y	98.83
3sso_A	419	Methyltransferase; macrolide, natural product, ros	98.83
2vdw_A	302	Vaccinia virus capping enzyme D1 subunit; nucleoti	98.83
3opn_A	232	Putative hemolysin; structural genomics, PSI-2, pr	98.83
2yxl_A	450	PH0851 protein, 450AA long hypothetical FMU protei	98.81
3bt7_A	369	TRNA (uracil-5-)-methyltransferase; methyluridine,	98.8
2p41_A	305	Type II methyltransferase; vizier, viral enzymes i	98.79
2b78_A	385	Hypothetical protein SMU.776; structure genomics,	98.77
1sqg_A	429	SUN protein, FMU protein; rossmann-fold, mixed bet	98.76
3o4f_A	294	Spermidine synthase; aminopropyltransferase, polya	98.74
3hp7_A	291	Hemolysin, putative; structural genomics, APC64019	98.72
3ll7_A	410	Putative methyltransferase; methytransferase, stru	98.72
2okc_A	445	Type I restriction enzyme stysji M protein; NP_813	98.71
2oyr_A	258	UPF0341 protein YHIQ; alpha-beta protein, structur	98.71
2frx_A	479	Hypothetical protein YEBU; rossmann-type S-adenosy	98.7
3giw_A	277	Protein of unknown function DUF574; rossmann-fold	98.7
2as0_A	396	Hypothetical protein PH1915; RNA methyltransferase	98.7
2k4m_A	153	TR8_protein, UPF0146 protein MTH_1000; alpha+beta,	98.69
3m6w_A	464	RRNA methylase; rRNA methyltransferase, 5-methylcy	98.69
2qfm_A	364	Spermine synthase; spermidine aminopropyltransfera	98.68
3c0k_A	396	UPF0064 protein YCCW; PUA domain, adoMet dependent	98.68
1wxx_A	382	TT1595, hypothetical protein TTHA1280; thermus the	98.66
2b9e_A	309	NOL1/NOP2/SUN domain family, member 5 isoform 2; m	98.66
4dmg_A	393	Putative uncharacterized protein TTHA1493; rRNA, m	98.65
3m4x_A	456	NOL1/NOP2/SUN family protein; mtase domain, PUA do	98.64
2dul_A	378	N(2),N(2)-dimethylguanosine tRNA methyltransferas;	98.56
3v97_A	703	Ribosomal RNA large subunit methyltransferase L; Y	98.56
1wg8_A	285	Predicted S-adenosylmethionine-dependent methyltra	98.43
3axs_A	392	Probable N(2),N(2)-dimethylguanosine tRNA methylt	98.41
2xyq_A	290	Putative 2'-O-methyl transferase; transferase-vira	98.41
4gqb_A	637	Protein arginine N-methyltransferase 5; TIM barrel	98.39
4auk_A	375	Ribosomal RNA large subunit methyltransferase M; Y	98.26
2ar0_A	541	M.ecoki, type I restriction enzyme ecoki M protein	98.22
3tka_A	347	Ribosomal RNA small subunit methyltransferase H; H	98.18
3khk_A	544	Type I restriction-modification system methylation	98.15
3lkd_A	542	Type I restriction-modification system methyltrans	98.14
3ua3_A	745	Protein arginine N-methyltransferase 5; TIM-barrel	98.12
3p8z_A	267	Mtase, non-structural protein 5; methyltransferase	98.09
3s1s_A	878	Restriction endonuclease bpusi; PD--(D/E)XK cataly	98.07
3c6k_A	381	Spermine synthase; spermidine aminopropyltransfera	97.93
1i4w_A	353	Mitochondrial replication protein MTF1; mitochondr	97.91
2zig_A	297	TTHA0409, putative modification methylase; methylt	97.9
3gcz_A	282	Polyprotein; flavivirus, RNA capping, methyltransf	97.9
3evf_A	277	RNA-directed RNA polymerase NS5; NS5 methyltransfe	97.84
2ld4_A	176	Anamorsin; methyltransferase-like fold, alpha/beta	97.75
3lkz_A	321	Non-structural protein 5; flavivirus, methyltransf	97.73
2px2_A	269	Genome polyprotein [contains: capsid protein C (co	97.53
2qy6_A	257	UPF0209 protein YFCK; structural genomics, unknown	97.45
3b5i_A	374	S-adenosyl-L-methionine:salicylic acid carboxyl me	97.38
3cvo_A	202	Methyltransferase-like protein of unknown functio;	97.29
3ufb_A	530	Type I restriction-modification system methyltran	97.1
1g60_A	260	Adenine-specific methyltransferase MBOIIA; structu	97.06
3eld_A	300	Methyltransferase; flavivirus, RNA capping, guanyl	96.66
1zkd_A	387	DUF185; NESG, RPR58, structural genomics, PSI, pro	96.47
1rjd_A	334	PPM1P, carboxy methyl transferase for protein phos	96.43
2py6_A	409	Methyltransferase FKBM; YP_546752.1, structural ge	96.4
4fzv_A	359	Putative methyltransferase NSUN4; mterf fold, meth	96.37
2wk1_A	282	NOVP; transferase, O-methyltransferase, novobiocin	96.23
2efj_A	384	3,7-dimethylxanthine methyltransferase; SAM-depend	96.04
2oo3_A	283	Protein involved in catabolism of external DNA; st	95.71
1g55_A	343	DNA cytosine methyltransferase DNMT2; human DNA me	95.18
3r24_A	344	NSP16, 2'-O-methyl transferase; methyltransferase,	94.89
3g7u_A	376	Cytosine-specific methyltransferase; DNA-binding,	94.38
2c7p_A	327	Modification methylase HHAI; DNA methyltransferase	94.27
1m6e_X	359	S-adenosyl-L-methionnine:salicylic acid carboxyl m	94.09
1boo_A	323	Protein (N-4 cytosine-specific methyltransferase P	93.36
3llv_A	141	Exopolyphosphatase-related protein; NAD(P)-binding	93.09
2uyo_A	310	Hypothetical protein ML2640; putative methyltransf	92.87
4f3n_A	432	Uncharacterized ACR, COG1565 superfamily; structur	92.58
3iht_A	174	S-adenosyl-L-methionine methyl transferase; YP_165	92.19
2g1u_A	155	Hypothetical protein TM1088A; structural genomics,	92.0
1eg2_A	319	Modification methylase RSRI; rossmann fold, exocyc	90.8
3qv2_A	327	5-cytosine DNA methyltransferase; DNMT2, ehmeth; H	90.51
2dph_A	398	Formaldehyde dismutase; dismutation of aldehydes,	90.32
3l4b_C	218	TRKA K+ channel protien TM1088B; potassium channel	89.31
4h0n_A	333	DNMT2; SAH binding, transferase; HET: SAH; 2.71A {	89.28
3vrd_B	401	FCCB subunit, flavocytochrome C flavin subunit; su	89.03
2qrv_A	295	DNA (cytosine-5)-methyltransferase 3A; DNA methylt	88.66
3b1f_A	290	Putative prephenate dehydrogenase; enzyme, 4-hydro	88.1
3ubt_Y	331	Modification methylase HAEIII; protein-DNA complex	88.04
3slg_A	372	PBGP3 protein; structural genomics, seattle struct	87.95
3iei_A	334	Leucine carboxyl methyltransferase 1; LCMT-1, S-ad	87.48
2aef_A	234	Calcium-gated potassium channel MTHK; rossmann fol	87.39
3ggo_A	314	Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-b	87.3
1f8f_A	371	Benzyl alcohol dehydrogenase; rossmann fold, oxido	87.11
3dfz_A	223	SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase	86.91
3ic5_A	118	Putative saccharopine dehydrogenase; structural ge	86.1
3two_A	348	Mannitol dehydrogenase; cinnamyl-alcohol dehydroge	85.9
2bll_A	345	Protein YFBG; decarboxylase, short chain dehydroge	85.68
3dqp_A	219	Oxidoreductase YLBE; alpha-beta protein., structur	85.67
1kol_A	398	Formaldehyde dehydrogenase; oxidoreductase; HET: N	85.63
3fwz_A	140	Inner membrane protein YBAL; TRKA-N domain, E.coli	85.31
3h2s_A	224	Putative NADH-flavin reductase; Q03B84, NESG, LCR1	85.08
2hmt_A	144	YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane	84.95
1pl8_A	356	Human sorbitol dehydrogenase; NAD, oxidoreductase;	84.87
3s2e_A	340	Zinc-containing alcohol dehydrogenase superfamily;	84.83
4g65_A	461	TRK system potassium uptake protein TRKA; structur	84.36
1lss_A	140	TRK system potassium uptake protein TRKA homolog;	84.01
3jv7_A	345	ADH-A; dehydrogenase, nucleotide binding, rossmann	83.23
1uuf_A	369	YAHK, zinc-type alcohol dehydrogenase-like protein	82.51
2h6e_A	344	ADH-4, D-arabinose 1-dehydrogenase; rossman fold,	81.96
3ius_A	286	Uncharacterized conserved protein; APC63810, silic	81.54
3l9w_A	413	Glutathione-regulated potassium-efflux system Pro	81.54
3hyw_A	430	Sulfide-quinone reductase; monotopic membrane prot	81.48
1pqw_A	198	Polyketide synthase; rossmann fold, dimer, structu	80.81
3ew7_A	221	LMO0794 protein; Q8Y8U8_lismo, putative NAD-depend	80.5
1jvb_A	347	NAD(H)-dependent alcohol dehydrogenase; archaeon,	80.37

>4a6d_A Hydroxyindole O-methyltransferase; melatonin, circadian clock; HET: SAM; 2.40A {Homo sapiens} PDB: 4a6e_A*

Probab=99.82  E-value=3.2e-20  Score=126.96  Aligned_cols=87  Identities=25%  Similarity=0.464  Sum_probs=76.7

Q ss_pred             CCcchhhhHHHHHhhcccCCCCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeehHHHHHhCCC------CCCeeEEEec
Q 034578            1 MACTTKITMKAFVSHYKVDGFNNIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDLQHVIATAPT------HEGVSHVGGD   74 (90)
Q Consensus         1 m~~~~~~~~~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~p~~~~~a~~------~~rv~~~~~d   74 (90)
                      |++.+...++.+++.++   +++..+|||||||+|.++..+++++|+++++++|+|++++.+++      .+|++++.+|
T Consensus       160 M~~~~~~~~~~~~~~~~---~~~~~~v~DvGgG~G~~~~~l~~~~p~~~~~~~dlp~v~~~a~~~~~~~~~~rv~~~~gD  236 (353)
T 4a6d_A          160 LQEVWSVNGRSVLTAFD---LSVFPLMCDLGGGAGALAKECMSLYPGCKITVFDIPEVVWTAKQHFSFQEEEQIDFQEGD  236 (353)
T ss_dssp             HHTTHHHHHHHHHHSSC---GGGCSEEEEETCTTSHHHHHHHHHCSSCEEEEEECHHHHHHHHHHSCC--CCSEEEEESC
T ss_pred             HHHHHHHHHHHHHHhcC---cccCCeEEeeCCCCCHHHHHHHHhCCCceeEeccCHHHHHHHHHhhhhcccCceeeecCc
Confidence            44566677888999998   67788999999999999999999999999999999999988764      4899999999


Q ss_pred             CCC-CCCcccEEEeecC
Q 034578           75 MFD-AIPNADAVFMKVA   90 (90)
Q Consensus        75 ~~~-~~p~~D~i~l~~v   90 (90)
                      ||+ +.|++|+|++++|
T Consensus       237 ~~~~~~~~~D~~~~~~v  253 (353)
T 4a6d_A          237 FFKDPLPEADLYILARV  253 (353)
T ss_dssp             TTTSCCCCCSEEEEESS
T ss_pred             cccCCCCCceEEEeeee
Confidence            998 4667999999986

>3p9c_A Caffeic acid O-methyltransferase; S-adenosylmethionine dependent O-methyltransferase; HET: SAH; 1.80A {Lolium perenne} PDB: 3p9i_A* 3p9k_A*

Probab=99.78  E-value=1.2e-18  Score=119.63  Aligned_cols=87  Identities=46%  Similarity=0.852  Sum_probs=76.9

Q ss_pred             CcchhhhHHHHHhhcccCCCCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeehHHHHHhCCCCCCeeEEEecCCCCCCc
Q 034578            2 ACTTKITMKAFVSHYKVDGFNNIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDLQHVIATAPTHEGVSHVGGDMFDAIPN   81 (90)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~p~~~~~a~~~~rv~~~~~d~~~~~p~   81 (90)
                      +..++...+.+++.++.  +++..+|||||||+|.++..+++++|+++++++|+|.+++.+++.+|++++.+|+++++|.
T Consensus       182 ~~~~~~~~~~~~~~~~~--~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~v~~~~~D~~~~~p~  259 (364)
T 3p9c_A          182 KNHSIIITKKLLELYHG--FEGLGTLVDVGGGVGATVAAIAAHYPTIKGVNFDLPHVISEAPQFPGVTHVGGDMFKEVPS  259 (364)
T ss_dssp             HHHHHHHHHHHHHHCCT--TTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHTTCCCCTTEEEEECCTTTCCCC
T ss_pred             HHhhHHHHHHHHHhccc--ccCCCEEEEeCCCCCHHHHHHHHHCCCCeEEEecCHHHHHhhhhcCCeEEEeCCcCCCCCC
Confidence            34455567778888873  6678899999999999999999999999999999999999999889999999999998777


Q ss_pred             ccEEEeecC
Q 034578           82 ADAVFMKVA   90 (90)
Q Consensus        82 ~D~i~l~~v   90 (90)
                      .|+|++++|
T Consensus       260 ~D~v~~~~v  268 (364)
T 3p9c_A          260 GDTILMKWI  268 (364)
T ss_dssp             CSEEEEESC
T ss_pred             CCEEEehHH
Confidence            899999875

>3reo_A (ISO)eugenol O-methyltransferase; directed evolution, saturation mutagenesis, regioselectivity transferase; HET: SAH EUG; 1.90A {Clarkia breweri} PDB: 3tky_A* 1kyz_A* 1kyw_A*

Probab=99.78  E-value=1.2e-18  Score=119.58  Aligned_cols=87  Identities=51%  Similarity=0.918  Sum_probs=76.8

Q ss_pred             CcchhhhHHHHHhhcccCCCCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeehHHHHHhCCCCCCeeEEEecCCCCCCc
Q 034578            2 ACTTKITMKAFVSHYKVDGFNNIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDLQHVIATAPTHEGVSHVGGDMFDAIPN   81 (90)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~p~~~~~a~~~~rv~~~~~d~~~~~p~   81 (90)
                      +..+....+.+++.++.  +.+..+|||||||+|.++..+++++|+++++++|+|.+++.+++.+|++++.+|+++++|.
T Consensus       184 ~~~~~~~~~~~~~~~~~--~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~v~~~~~d~~~~~p~  261 (368)
T 3reo_A          184 SSNSTITMKKILEMYNG--FEGLTTIVDVGGGTGAVASMIVAKYPSINAINFDLPHVIQDAPAFSGVEHLGGDMFDGVPK  261 (368)
T ss_dssp             HHHHHHHHHHHHTTCCT--TTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHTTCCCCTTEEEEECCTTTCCCC
T ss_pred             HhhhhhHHHHHHHhccc--ccCCCEEEEeCCCcCHHHHHHHHhCCCCEEEEEehHHHHHhhhhcCCCEEEecCCCCCCCC
Confidence            34455567778888873  6677899999999999999999999999999999999999999889999999999998887


Q ss_pred             ccEEEeecC
Q 034578           82 ADAVFMKVA   90 (90)
Q Consensus        82 ~D~i~l~~v   90 (90)
                      .|+|++++|
T Consensus       262 ~D~v~~~~v  270 (368)
T 3reo_A          262 GDAIFIKWI  270 (368)
T ss_dssp             CSEEEEESC
T ss_pred             CCEEEEech
Confidence            899999875

>1fp1_D Isoliquiritigenin 2'-O-methyltransferase; protein-substrate, protein-product complex; HET: SAH HCC; 1.82A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpq_A*

Probab=99.73  E-value=2.6e-17  Score=112.80  Aligned_cols=86  Identities=47%  Similarity=0.834  Sum_probs=75.2

Q ss_pred             cchhhhHHHHHhhcccCCCCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeehHHHHHhCCCCCCeeEEEecCCCCCCcc
Q 034578            3 CTTKITMKAFVSHYKVDGFNNIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDLQHVIATAPTHEGVSHVGGDMFDAIPNA   82 (90)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~p~~~~~a~~~~rv~~~~~d~~~~~p~~   82 (90)
                      ..+...++.+++.++.  +.+..+|||||||+|.++..+++++|+++++++|+|.+++.+++.++++++.+|+++++|.+
T Consensus       191 ~~~~~~~~~l~~~~~~--~~~~~~vLDvG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~a~~~~~v~~~~~d~~~~~~~~  268 (372)
T 1fp1_D          191 DVCATEMKRMLEIYTG--FEGISTLVDVGGGSGRNLELIISKYPLIKGINFDLPQVIENAPPLSGIEHVGGDMFASVPQG  268 (372)
T ss_dssp             HHHHHHHHHHHHHCCT--TTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHTTCCCCTTEEEEECCTTTCCCCE
T ss_pred             hhhHHHHHHHHHHhhc--cCCCCEEEEeCCCCcHHHHHHHHHCCCCeEEEeChHHHHHhhhhcCCCEEEeCCcccCCCCC
Confidence            3444556778888862  66778999999999999999999999999999999999999998888999999999977779


Q ss_pred             cEEEeecC
Q 034578           83 DAVFMKVA   90 (90)
Q Consensus        83 D~i~l~~v   90 (90)
                      |+|+++++
T Consensus       269 D~v~~~~~  276 (372)
T 1fp1_D          269 DAMILKAV  276 (372)
T ss_dssp             EEEEEESS
T ss_pred             CEEEEecc
Confidence            99999875

>1fp2_A Isoflavone O-methyltransferase; protein-product complex; HET: SAH HMO; 1.40A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpx_A* 2qyo_A*

Probab=99.73  E-value=1.7e-17  Score=112.97  Aligned_cols=85  Identities=40%  Similarity=0.673  Sum_probs=71.6

Q ss_pred             chhhhHHHHHhhcccCCCCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeehHHHHHhCCCCCCeeEEEecCCCCCCccc
Q 034578            4 TTKITMKAFVSHYKVDGFNNIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDLQHVIATAPTHEGVSHVGGDMFDAIPNAD   83 (90)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~p~~~~~a~~~~rv~~~~~d~~~~~p~~D   83 (90)
                      .+....+. ++.+++ .+.+..+|||||||+|.++..+++++|+.+++++|+|.+++.+++.++++++.+|+++++|.+|
T Consensus       171 ~~~~~~~~-~~~~~~-~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~v~~~~~d~~~~~p~~D  248 (352)
T 1fp2_A          171 DSKLINLA-LRDCDF-VFDGLESIVDVGGGTGTTAKIICETFPKLKCIVFDRPQVVENLSGSNNLTYVGGDMFTSIPNAD  248 (352)
T ss_dssp             THHHHHHH-HHTCHH-HHTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHTTCCCBTTEEEEECCTTTCCCCCS
T ss_pred             cchhhhhH-HHhccc-ccccCceEEEeCCCccHHHHHHHHHCCCCeEEEeeCHHHHhhcccCCCcEEEeccccCCCCCcc
Confidence            33444455 666621 1567789999999999999999999999999999999999999887789999999998878899


Q ss_pred             EEEeecC
Q 034578           84 AVFMKVA   90 (90)
Q Consensus        84 ~i~l~~v   90 (90)
                      +|+++++
T Consensus       249 ~v~~~~~  255 (352)
T 1fp2_A          249 AVLLKYI  255 (352)
T ss_dssp             EEEEESC
T ss_pred             EEEeehh
Confidence            9999875

>1zg3_A Isoflavanone 4'-O-methyltransferase; rossman fold, plant Pro transferase; HET: 2HI SAH; 2.35A {Medicago truncatula} PDB: 1zga_A* 1zhf_A* 1zgj_A*

Probab=99.71  E-value=2.2e-17  Score=112.58  Aligned_cols=79  Identities=42%  Similarity=0.688  Sum_probs=69.4

Q ss_pred             HHHhhcccCCCCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeehHHHHHhCCCCCCeeEEEecCCCCCCcccEEEeecC
Q 034578           11 AFVSHYKVDGFNNIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDLQHVIATAPTHEGVSHVGGDMFDAIPNADAVFMKVA   90 (90)
Q Consensus        11 ~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~p~~~~~a~~~~rv~~~~~d~~~~~p~~D~i~l~~v   90 (90)
                      .+++.+++ .+.+..+|||||||+|.++..+++++|+++++++|+|.+++.+++.++++++.+|+++++|.+|+|+++++
T Consensus       182 ~~~~~~~~-~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~v~~~~~d~~~~~~~~D~v~~~~v  260 (358)
T 1zg3_A          182 LVLQENKR-VFEGLESLVDVGGGTGGVTKLIHEIFPHLKCTVFDQPQVVGNLTGNENLNFVGGDMFKSIPSADAVLLKWV  260 (358)
T ss_dssp             HHHHHTHH-HHHTCSEEEEETCTTSHHHHHHHHHCTTSEEEEEECHHHHSSCCCCSSEEEEECCTTTCCCCCSEEEEESC
T ss_pred             HHHHhcch-hccCCCEEEEECCCcCHHHHHHHHHCCCCeEEEeccHHHHhhcccCCCcEEEeCccCCCCCCceEEEEccc
Confidence            67777721 15567899999999999999999999999999999999999998877899999999997778999999875

>3gwz_A MMCR; methyltransferase, mitomycin, S-adenosyl methionine, transferase; HET: MSE SAH; 1.91A {Streptomyces lavendulae} PDB: 3gxo_A*

Probab=99.71  E-value=3e-17  Score=112.55  Aligned_cols=84  Identities=25%  Similarity=0.543  Sum_probs=73.6

Q ss_pred             chhhhHHHHHhhcccCCCCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeehHHHHHhCCC-------CCCeeEEEecCC
Q 034578            4 TTKITMKAFVSHYKVDGFNNIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDLQHVIATAPT-------HEGVSHVGGDMF   76 (90)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~p~~~~~a~~-------~~rv~~~~~d~~   76 (90)
                      .+...++.+++.++   +.+..+|||||||+|.++..+++++|+++++++|+|.+++.+++       .+|++++.+|++
T Consensus       186 ~~~~~~~~l~~~~~---~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~~~~l~~~v~~~~~d~~  262 (369)
T 3gwz_A          186 VSLTEAGQVAAAYD---FSGAATAVDIGGGRGSLMAAVLDAFPGLRGTLLERPPVAEEARELLTGRGLADRCEILPGDFF  262 (369)
T ss_dssp             HHHHHHHHHHHHSC---CTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHHHHHHHHHHTTCTTTEEEEECCTT
T ss_pred             HHhhhHHHHHHhCC---CccCcEEEEeCCCccHHHHHHHHHCCCCeEEEEcCHHHHHHHHHhhhhcCcCCceEEeccCCC
Confidence            34555778888888   67789999999999999999999999999999999999888875       378999999999


Q ss_pred             CCCC-cccEEEeecC
Q 034578           77 DAIP-NADAVFMKVA   90 (90)
Q Consensus        77 ~~~p-~~D~i~l~~v   90 (90)
                      +++| .||+|++++|
T Consensus       263 ~~~p~~~D~v~~~~v  277 (369)
T 3gwz_A          263 ETIPDGADVYLIKHV  277 (369)
T ss_dssp             TCCCSSCSEEEEESC
T ss_pred             CCCCCCceEEEhhhh
Confidence            8888 4999999875

>3lst_A CALO1 methyltransferase; calicheamicin, enediyne, SAH, STRU genomics, PSI-2, protein structure initiative; HET: SAH; 2.40A {Micromonospora echinospora}

Probab=99.71  E-value=5.3e-17  Score=110.42  Aligned_cols=85  Identities=24%  Similarity=0.394  Sum_probs=72.0

Q ss_pred             cchhhhHHHHHhhcccCCCCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeehHHHHHhCCC-----CCCeeEEEecCCC
Q 034578            3 CTTKITMKAFVSHYKVDGFNNIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDLQHVIATAPT-----HEGVSHVGGDMFD   77 (90)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~p~~~~~a~~-----~~rv~~~~~d~~~   77 (90)
                      ..+....+.+++.++   +.+..+|||||||+|.++..+++++|+++++++|+|.++..++.     .+|++++.+|+++
T Consensus       167 ~~~~~~~~~~~~~~~---~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~~~~~~~~~~~~v~~~~~d~~~  243 (348)
T 3lst_A          167 TVSAAEHLILARAGD---FPATGTVADVGGGRGGFLLTVLREHPGLQGVLLDRAEVVARHRLDAPDVAGRWKVVEGDFLR  243 (348)
T ss_dssp             HHHHTTHHHHHHHSC---CCSSEEEEEETCTTSHHHHHHHHHCTTEEEEEEECHHHHTTCCCCCGGGTTSEEEEECCTTT
T ss_pred             HhhhhhHHHHHHhCC---ccCCceEEEECCccCHHHHHHHHHCCCCEEEEecCHHHhhcccccccCCCCCeEEEecCCCC
Confidence            345556778888888   67788999999999999999999999999999999887773332     3689999999998


Q ss_pred             CCCcccEEEeecC
Q 034578           78 AIPNADAVFMKVA   90 (90)
Q Consensus        78 ~~p~~D~i~l~~v   90 (90)
                      ++|.||+|+++++
T Consensus       244 ~~p~~D~v~~~~v  256 (348)
T 3lst_A          244 EVPHADVHVLKRI  256 (348)
T ss_dssp             CCCCCSEEEEESC
T ss_pred             CCCCCcEEEEehh
Confidence            7778999999875

>3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A* 3i5u_A* 3i64_A*

Probab=99.70  E-value=1.6e-17  Score=112.11  Aligned_cols=81  Identities=25%  Similarity=0.499  Sum_probs=69.5

Q ss_pred             hhHHHHHhhcccCCCCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeehHHHHHhCCC-------CCCeeEEEecCCCCC
Q 034578            7 ITMKAFVSHYKVDGFNNIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDLQHVIATAPT-------HEGVSHVGGDMFDAI   79 (90)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~p~~~~~a~~-------~~rv~~~~~d~~~~~   79 (90)
                      ...+.+++.++   +.+..+|||||||+|.++..+++++|+.+++++|+|.+++.+++       .+|++++.+|+++++
T Consensus       156 ~~~~~~~~~~~---~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~  232 (332)
T 3i53_A          156 LDYTGIAAKYD---WAALGHVVDVGGGSGGLLSALLTAHEDLSGTVLDLQGPASAAHRRFLDTGLSGRAQVVVGSFFDPL  232 (332)
T ss_dssp             HHHTTGGGSSC---CGGGSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHHHHHHHHHHTTCTTTEEEEECCTTSCC
T ss_pred             hhHHHHHHhCC---CCCCCEEEEeCCChhHHHHHHHHHCCCCeEEEecCHHHHHHHHHhhhhcCcCcCeEEecCCCCCCC
Confidence            33455666666   56678999999999999999999999999999999999988874       378999999999888


Q ss_pred             C-cccEEEeecC
Q 034578           80 P-NADAVFMKVA   90 (90)
Q Consensus        80 p-~~D~i~l~~v   90 (90)
                      | .+|+|++++|
T Consensus       233 p~~~D~v~~~~v  244 (332)
T 3i53_A          233 PAGAGGYVLSAV  244 (332)
T ss_dssp             CCSCSEEEEESC
T ss_pred             CCCCcEEEEehh
Confidence            8 5999999875

>1qzz_A RDMB, aclacinomycin-10-hydroxylase; anthracycline, methyltransferase, polyketide, tailoring enzymes, structural proteomics in E spine; HET: SAM; 2.10A {Streptomyces purpurascens} SCOP: a.4.5.29 c.66.1.12 PDB: 1r00_A* 1xds_A* 1xdu_A*

Probab=99.66  E-value=4.7e-16  Score=106.06  Aligned_cols=86  Identities=30%  Similarity=0.599  Sum_probs=72.9

Q ss_pred             CcchhhhHHHHHhhcccCCCCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeehHHHHHhCCC-------CCCeeEEEec
Q 034578            2 ACTTKITMKAFVSHYKVDGFNNIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDLQHVIATAPT-------HEGVSHVGGD   74 (90)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~p~~~~~a~~-------~~rv~~~~~d   74 (90)
                      ...+....+.+++.++   +.+..+|||||||+|.++..+++++|+.+++++|+|.+++.+++       .++++++.+|
T Consensus       164 ~~~~~~~~~~~~~~~~---~~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~a~~~~~~~~~~~~v~~~~~d  240 (374)
T 1qzz_A          164 SCDEDLAYEAPADAYD---WSAVRHVLDVGGGNGGMLAAIALRAPHLRGTLVELAGPAERARRRFADAGLADRVTVAEGD  240 (374)
T ss_dssp             GGGSTTTTHHHHHTSC---CTTCCEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHHHHHHHHHHTTCTTTEEEEECC
T ss_pred             HHhhHhHHHHHHHhCC---CCCCCEEEEECCCcCHHHHHHHHHCCCCEEEEEeCHHHHHHHHHHHHhcCCCCceEEEeCC
Confidence            3444555677888887   66778999999999999999999999999999999888888765       2489999999


Q ss_pred             CCCCCCc-ccEEEeecC
Q 034578           75 MFDAIPN-ADAVFMKVA   90 (90)
Q Consensus        75 ~~~~~p~-~D~i~l~~v   90 (90)
                      +++++|. +|+|+++++
T Consensus       241 ~~~~~~~~~D~v~~~~v  257 (374)
T 1qzz_A          241 FFKPLPVTADVVLLSFV  257 (374)
T ss_dssp             TTSCCSCCEEEEEEESC
T ss_pred             CCCcCCCCCCEEEEecc
Confidence            9987776 999999864

>2ip2_A Probable phenazine-specific methyltransferase; pyocyanin, phenazine-1-carboxy PHZM; 1.80A {Pseudomonas aeruginosa}

Probab=99.66  E-value=2.4e-16  Score=106.24  Aligned_cols=84  Identities=30%  Similarity=0.558  Sum_probs=72.1

Q ss_pred             cchhhhHHHHHhhcccCCCCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeehHHHHHhCCC-------CCCeeEEEecC
Q 034578            3 CTTKITMKAFVSHYKVDGFNNIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDLQHVIATAPT-------HEGVSHVGGDM   75 (90)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~p~~~~~a~~-------~~rv~~~~~d~   75 (90)
                      ..+....+.+++.++   +.+ .+|||||||+|.++..+++++|+.+++++|+|.+++.+++       .+|++++.+|+
T Consensus       151 ~~~~~~~~~~~~~~~---~~~-~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~~~~~~~~v~~~~~d~  226 (334)
T 2ip2_A          151 KASNLAFHEIPRLLD---FRG-RSFVDVGGGSGELTKAILQAEPSARGVMLDREGSLGVARDNLSSLLAGERVSLVGGDM  226 (334)
T ss_dssp             GGGHHHHHHHHHHSC---CTT-CEEEEETCTTCHHHHHHHHHCTTCEEEEEECTTCTHHHHHHTHHHHHTTSEEEEESCT
T ss_pred             HHHHHHHHHHHHhCC---CCC-CEEEEeCCCchHHHHHHHHHCCCCEEEEeCcHHHHHHHHHHHhhcCCCCcEEEecCCC
Confidence            345556778888887   566 8999999999999999999999999999999888887765       36899999999


Q ss_pred             CCCCCc-ccEEEeecC
Q 034578           76 FDAIPN-ADAVFMKVA   90 (90)
Q Consensus        76 ~~~~p~-~D~i~l~~v   90 (90)
                      ++++|. +|+|+++++
T Consensus       227 ~~~~~~~~D~v~~~~v  242 (334)
T 2ip2_A          227 LQEVPSNGDIYLLSRI  242 (334)
T ss_dssp             TTCCCSSCSEEEEESC
T ss_pred             CCCCCCCCCEEEEchh
Confidence            987776 999999875

>1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate, tailoring enzyme, polyketide, S-adenosyl-L-homocystein; HET: SAH ERT; 2.35A {Streptomyces peucetius} SCOP: a.4.5.29 c.66.1.12 PDB: 1tw2_A*

Probab=99.64  E-value=5.5e-16  Score=105.36  Aligned_cols=85  Identities=31%  Similarity=0.660  Sum_probs=72.1

Q ss_pred             cchhhhHHHHHhhcccCCCCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeehHHHHHhCCC-------CCCeeEEEecC
Q 034578            3 CTTKITMKAFVSHYKVDGFNNIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDLQHVIATAPT-------HEGVSHVGGDM   75 (90)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~p~~~~~a~~-------~~rv~~~~~d~   75 (90)
                      ..+....+.+++.++   +.+..+|||||||+|.++..+++++|+++++++|+|.+++.+++       .+|++++.+|+
T Consensus       166 ~~~~~~~~~l~~~~~---~~~~~~vLDvG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~a~~~~~~~~~~~~v~~~~~d~  242 (360)
T 1tw3_A          166 CDQDVAFDAPAAAYD---WTNVRHVLDVGGGKGGFAAAIARRAPHVSATVLEMAGTVDTARSYLKDEGLSDRVDVVEGDF  242 (360)
T ss_dssp             TTTTTTTHHHHHHSC---CTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECTTHHHHHHHHHHHTTCTTTEEEEECCT
T ss_pred             HHHHHhHHHHHHhCC---CccCcEEEEeCCcCcHHHHHHHHhCCCCEEEEecCHHHHHHHHHHHHhcCCCCceEEEeCCC
Confidence            344555677788887   66778999999999999999999999999999999888887765       24899999999


Q ss_pred             CCCCCc-ccEEEeecC
Q 034578           76 FDAIPN-ADAVFMKVA   90 (90)
Q Consensus        76 ~~~~p~-~D~i~l~~v   90 (90)
                      ++++|. +|+|+++++
T Consensus       243 ~~~~~~~~D~v~~~~v  258 (360)
T 1tw3_A          243 FEPLPRKADAIILSFV  258 (360)
T ss_dssp             TSCCSSCEEEEEEESC
T ss_pred             CCCCCCCccEEEEccc
Confidence            987776 999999864

>1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll, BCHU, SAM, SAH, adenosylmethyonine, S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium tepidum} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A*

Probab=99.64  E-value=4.8e-16  Score=105.92  Aligned_cols=81  Identities=23%  Similarity=0.526  Sum_probs=70.7

Q ss_pred             hhHHHHHhhcccCCCCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeehHHHHHhCCC-------CCCeeEEEecCCC-C
Q 034578            7 ITMKAFVSHYKVDGFNNIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDLQHVIATAPT-------HEGVSHVGGDMFD-A   78 (90)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~p~~~~~a~~-------~~rv~~~~~d~~~-~   78 (90)
                      ..++.+++.++   +.+..+|||||||+|.++..+++++|+.+++++|+|.+++.+++       .+|++++.+|+++ +
T Consensus       177 ~~~~~l~~~~~---~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~  253 (359)
T 1x19_A          177 FAIQLLLEEAK---LDGVKKMIDVGGGIGDISAAMLKHFPELDSTILNLPGAIDLVNENAAEKGVADRMRGIAVDIYKES  253 (359)
T ss_dssp             HHHHHHHHHCC---CTTCCEEEEESCTTCHHHHHHHHHCTTCEEEEEECGGGHHHHHHHHHHTTCTTTEEEEECCTTTSC
T ss_pred             hhHHHHHHhcC---CCCCCEEEEECCcccHHHHHHHHHCCCCeEEEEecHHHHHHHHHHHHhcCCCCCEEEEeCccccCC
Confidence            56678888887   66788999999999999999999999999999999888888764       3579999999998 5


Q ss_pred             CCcccEEEeecC
Q 034578           79 IPNADAVFMKVA   90 (90)
Q Consensus        79 ~p~~D~i~l~~v   90 (90)
                      ++.+|+|+++++
T Consensus       254 ~~~~D~v~~~~v  265 (359)
T 1x19_A          254 YPEADAVLFCRI  265 (359)
T ss_dssp             CCCCSEEEEESC
T ss_pred             CCCCCEEEEech
Confidence            666899999865

>3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research; 2.33A {Bacteroides vulgatus}

Probab=99.62  E-value=3.1e-16  Score=107.30  Aligned_cols=69  Identities=23%  Similarity=0.409  Sum_probs=61.2

Q ss_pred             CCCCeEEEecCCchHHHHHHHHHCCCCeEEEeehHHHHHhCCC-------CCCeeEEEecCCCC---CCc-ccEEEeecC
Q 034578           22 NNIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDLQHVIATAPT-------HEGVSHVGGDMFDA---IPN-ADAVFMKVA   90 (90)
Q Consensus        22 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~p~~~~~a~~-------~~rv~~~~~d~~~~---~p~-~D~i~l~~v   90 (90)
                      .+..+|||||||+|.++..+++++|+++++++|+|.+++.+++       .+|++++.+|+++.   +|. +|+|+++++
T Consensus       178 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~p~~~D~v~~~~v  257 (363)
T 3dp7_A          178 HHPKRLLDIGGNTGKWATQCVQYNKEVEVTIVDLPQQLEMMRKQTAGLSGSERIHGHGANLLDRDVPFPTGFDAVWMSQF  257 (363)
T ss_dssp             GCCSEEEEESCTTCHHHHHHHHHSTTCEEEEEECHHHHHHHHHHHTTCTTGGGEEEEECCCCSSSCCCCCCCSEEEEESC
T ss_pred             cCCCEEEEeCCCcCHHHHHHHHhCCCCEEEEEeCHHHHHHHHHHHHhcCcccceEEEEccccccCCCCCCCcCEEEEech
Confidence            4568999999999999999999999999999999999888765       15899999999983   674 999999875

>2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.15A {Nostoc punctiforme}

Probab=99.61  E-value=2.5e-15  Score=100.98  Aligned_cols=87  Identities=14%  Similarity=0.161  Sum_probs=73.7

Q ss_pred             CCcchhhhHHHHHhhcccCCC--CCCCeEEEecCCchHHHHHHHHHCCCCeEEEeehHHHHHhCCC-------CCCeeEE
Q 034578            1 MACTTKITMKAFVSHYKVDGF--NNIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDLQHVIATAPT-------HEGVSHV   71 (90)
Q Consensus         1 m~~~~~~~~~~~~~~~~~~~~--~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~p~~~~~a~~-------~~rv~~~   71 (90)
                      |...+...+..+++.++   +  .+..+|||+|||+|.++..+++++|+.+++++|++.+++.+++       .+|++++
T Consensus       144 ~~~~~~~~~~~~~~~~~---~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~~~~~~~~v~~~  220 (335)
T 2r3s_A          144 MSPMMANPAQLIAQLVN---ENKIEPLKVLDISASHGLFGIAVAQHNPNAEIFGVDWASVLEVAKENARIQGVASRYHTI  220 (335)
T ss_dssp             SGGGGHHHHHHHHHHHT---C--CCCSEEEEETCTTCHHHHHHHHHCTTCEEEEEECHHHHHHHHHHHHHHTCGGGEEEE
T ss_pred             HHHHHhhhHHHHHHhcc---cccCCCCEEEEECCCcCHHHHHHHHHCCCCeEEEEecHHHHHHHHHHHHhcCCCcceEEE
Confidence            44555666778888887   5  6778999999999999999999999999999999888887765       2579999


Q ss_pred             EecCCC-CCCc-ccEEEeecC
Q 034578           72 GGDMFD-AIPN-ADAVFMKVA   90 (90)
Q Consensus        72 ~~d~~~-~~p~-~D~i~l~~v   90 (90)
                      .+|+++ ++|. +|+|+++++
T Consensus       221 ~~d~~~~~~~~~~D~v~~~~~  241 (335)
T 2r3s_A          221 AGSAFEVDYGNDYDLVLLPNF  241 (335)
T ss_dssp             ESCTTTSCCCSCEEEEEEESC
T ss_pred             ecccccCCCCCCCcEEEEcch
Confidence            999998 6666 999999764

>3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent methyltransfer structural genomics, PSI-2; HET: MSE; 1.90A {Burkholderia thailandensis}

Probab=99.60  E-value=1.8e-15  Score=102.55  Aligned_cols=77  Identities=27%  Similarity=0.433  Sum_probs=66.7

Q ss_pred             HHHhhcccCCCCC-CCeEEEecCCchHHHHHHHHHCCCCeEEEeehHHHHHhCCC-------CCCeeEEEecCCCC---C
Q 034578           11 AFVSHYKVDGFNN-IRSMVDVGGGTGTVLAEIVKSYPHIKGINFDLQHVIATAPT-------HEGVSHVGGDMFDA---I   79 (90)
Q Consensus        11 ~~~~~~~~~~~~~-~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~p~~~~~a~~-------~~rv~~~~~d~~~~---~   79 (90)
                      .+++.++   +.+ ..+|||||||+|.++..+++++|+.+++++|+|.+++.+++       .+|++++.+|+++.   .
T Consensus       169 ~~l~~~~---~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~  245 (352)
T 3mcz_A          169 DVVSELG---VFARARTVIDLAGGHGTYLAQVLRRHPQLTGQIWDLPTTRDAARKTIHAHDLGGRVEFFEKNLLDARNFE  245 (352)
T ss_dssp             HHHHTCG---GGTTCCEEEEETCTTCHHHHHHHHHCTTCEEEEEECGGGHHHHHHHHHHTTCGGGEEEEECCTTCGGGGT
T ss_pred             HHHHhCC---CcCCCCEEEEeCCCcCHHHHHHHHhCCCCeEEEEECHHHHHHHHHHHHhcCCCCceEEEeCCcccCcccC
Confidence            6788888   445 78999999999999999999999999999999888887764       25899999999983   5


Q ss_pred             Cc-ccEEEeecC
Q 034578           80 PN-ADAVFMKVA   90 (90)
Q Consensus        80 p~-~D~i~l~~v   90 (90)
                      +. ||+|+++++
T Consensus       246 ~~~~D~v~~~~v  257 (352)
T 3mcz_A          246 GGAADVVMLNDC  257 (352)
T ss_dssp             TCCEEEEEEESC
T ss_pred             CCCccEEEEecc
Confidence            65 999999875

>4gek_A TRNA (CMO5U34)-methyltransferase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, rossmann fold; HET: GEK; 1.50A {Escherichia coli} PDB: 1im8_A*

Probab=99.57  E-value=1.4e-14  Score=95.78  Aligned_cols=68  Identities=24%  Similarity=0.291  Sum_probs=58.9

Q ss_pred             CCCCeEEEecCCchHHHHHHHHHC--CCCeEEEeeh-HHHHHhCCC-------CCCeeEEEecCCC-CCCcccEEEeec
Q 034578           22 NNIRSMVDVGGGTGTVLAEIVKSY--PHIKGINFDL-QHVIATAPT-------HEGVSHVGGDMFD-AIPNADAVFMKV   89 (90)
Q Consensus        22 ~~~~~vlDvG~G~G~~~~~l~~~~--p~~~~~~~D~-p~~~~~a~~-------~~rv~~~~~d~~~-~~p~~D~i~l~~   89 (90)
                      ++..+|||||||+|.++..+++++  |+++++++|+ |.|++.|++       ..+++++.+|+.+ +++.+|+|++..
T Consensus        69 ~~~~~vLDlGcGtG~~~~~la~~~~~~~~~v~gvD~s~~ml~~A~~~~~~~~~~~~v~~~~~D~~~~~~~~~d~v~~~~  147 (261)
T 4gek_A           69 QPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIAIENASMVVLNF  147 (261)
T ss_dssp             CTTCEEEEETCTTTHHHHHHHHTCCSSSCEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCTTTCCCCSEEEEEEES
T ss_pred             CCCCEEEEEeCCCCHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHHHHhhccCceEEEeecccccccccccccceeee
Confidence            456799999999999999999985  6789999999 999998865       2589999999988 666799998864

>3ege_A Putative methyltransferase from antibiotic biosyn pathway; YP_324569.1, putative methyltransferase from antibiotic BIOS pathway; 2.40A {Anabaena variabilis atcc 29413}

Probab=99.53  E-value=7.9e-14  Score=91.19  Aligned_cols=80  Identities=19%  Similarity=0.233  Sum_probs=68.1

Q ss_pred             hhhHHHHHhhcccCCCCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeeh-HHHHHhCCCCCCeeEEEecCCC-CCCc--
Q 034578            6 KITMKAFVSHYKVDGFNNIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDL-QHVIATAPTHEGVSHVGGDMFD-AIPN--   81 (90)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~~rv~~~~~d~~~-~~p~--   81 (90)
                      ....+.+++.++   ..+..+|||||||+|.++..+++  |..+++++|+ |.+++.+++..+++++.+|+.+ +++.  
T Consensus        20 ~~~~~~l~~~~~---~~~~~~vLDiGcG~G~~~~~l~~--~~~~v~gvD~s~~~~~~a~~~~~~~~~~~d~~~~~~~~~~   94 (261)
T 3ege_A           20 IRIVNAIINLLN---LPKGSVIADIGAGTGGYSVALAN--QGLFVYAVEPSIVMRQQAVVHPQVEWFTGYAENLALPDKS   94 (261)
T ss_dssp             HHHHHHHHHHHC---CCTTCEEEEETCTTSHHHHHHHT--TTCEEEEECSCHHHHHSSCCCTTEEEECCCTTSCCSCTTC
T ss_pred             HHHHHHHHHHhC---CCCCCEEEEEcCcccHHHHHHHh--CCCEEEEEeCCHHHHHHHHhccCCEEEECchhhCCCCCCC
Confidence            345677777776   55678999999999999999998  7889999999 9999999988899999999987 5553  


Q ss_pred             ccEEEeecC
Q 034578           82 ADAVFMKVA   90 (90)
Q Consensus        82 ~D~i~l~~v   90 (90)
                      +|+|+++++
T Consensus        95 fD~v~~~~~  103 (261)
T 3ege_A           95 VDGVISILA  103 (261)
T ss_dssp             BSEEEEESC
T ss_pred             EeEEEEcch
Confidence            999998763

>4hg2_A Methyltransferase type 11; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MES; 1.60A {Anaeromyxobacter dehalogenans}

Probab=99.51  E-value=1.4e-13  Score=90.88  Aligned_cols=65  Identities=18%  Similarity=0.212  Sum_probs=57.8

Q ss_pred             CCCeEEEecCCchHHHHHHHHHCCCCeEEEeeh-HHHHHhCCCCCCeeEEEecCCC-CCCc--ccEEEeec
Q 034578           23 NIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDL-QHVIATAPTHEGVSHVGGDMFD-AIPN--ADAVFMKV   89 (90)
Q Consensus        23 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~~rv~~~~~d~~~-~~p~--~D~i~l~~   89 (90)
                      ...+|||||||+|.++..+++.+  .+++++|+ +.|++.|++.++++++.+|+.+ +++.  +|+|++..
T Consensus        39 ~~~~vLDvGcGtG~~~~~l~~~~--~~v~gvD~s~~ml~~a~~~~~v~~~~~~~e~~~~~~~sfD~v~~~~  107 (257)
T 4hg2_A           39 ARGDALDCGCGSGQASLGLAEFF--ERVHAVDPGEAQIRQALRHPRVTYAVAPAEDTGLPPASVDVAIAAQ  107 (257)
T ss_dssp             CSSEEEEESCTTTTTHHHHHTTC--SEEEEEESCHHHHHTCCCCTTEEEEECCTTCCCCCSSCEEEEEECS
T ss_pred             CCCCEEEEcCCCCHHHHHHHHhC--CEEEEEeCcHHhhhhhhhcCCceeehhhhhhhcccCCcccEEEEee
Confidence            35789999999999999999886  57999999 9999999999999999999987 6664  89999865

>3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei}

Probab=99.50  E-value=1.8e-13  Score=87.71  Aligned_cols=79  Identities=22%  Similarity=0.273  Sum_probs=64.5

Q ss_pred             HHHHhhcccCCCCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeeh-HHHHHhCCC----CCCeeEEEecCCC-CCCc-c
Q 034578           10 KAFVSHYKVDGFNNIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDL-QHVIATAPT----HEGVSHVGGDMFD-AIPN-A   82 (90)
Q Consensus        10 ~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~----~~rv~~~~~d~~~-~~p~-~   82 (90)
                      +.+++.++.  ..+..+|||+|||+|.++..+++.+|..+++++|+ |.+++.+++    .++++++.+|+.+ +.+. +
T Consensus        33 ~~~~~~~~~--~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~f  110 (234)
T 3dtn_A           33 GVSVSIASV--DTENPDILDLGAGTGLLSAFLMEKYPEATFTLVDMSEKMLEIAKNRFRGNLKVKYIEADYSKYDFEEKY  110 (234)
T ss_dssp             HHHHHTCCC--SCSSCEEEEETCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTCSCTTEEEEESCTTTCCCCSCE
T ss_pred             HHHHHHhhc--CCCCCeEEEecCCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHHhhccCCCEEEEeCchhccCCCCCc
Confidence            455555542  34568999999999999999999999999999999 999887765    3589999999988 4444 9


Q ss_pred             cEEEeecC
Q 034578           83 DAVFMKVA   90 (90)
Q Consensus        83 D~i~l~~v   90 (90)
                      |+|++..+
T Consensus       111 D~v~~~~~  118 (234)
T 3dtn_A          111 DMVVSALS  118 (234)
T ss_dssp             EEEEEESC
T ss_pred             eEEEEeCc
Confidence            99998753

>3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A*

Probab=99.50  E-value=1.3e-13  Score=89.43  Aligned_cols=81  Identities=19%  Similarity=0.335  Sum_probs=66.5

Q ss_pred             hhhHHHHHhhcccCCCCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeeh-HHHHHhCCCC----CCeeEEEecCCC-CC
Q 034578            6 KITMKAFVSHYKVDGFNNIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDL-QHVIATAPTH----EGVSHVGGDMFD-AI   79 (90)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~----~rv~~~~~d~~~-~~   79 (90)
                      ....+.+++.++   ..+..+|||+|||+|.++..+++++ ..+++++|+ |.+++.+++.    ++++++.+|+.+ ++
T Consensus        41 ~~~~~~~~~~~~---~~~~~~vLdiG~G~G~~~~~l~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~  116 (266)
T 3ujc_A           41 LEATKKILSDIE---LNENSKVLDIGSGLGGGCMYINEKY-GAHTHGIDICSNIVNMANERVSGNNKIIFEANDILTKEF  116 (266)
T ss_dssp             HHHHHHHTTTCC---CCTTCEEEEETCTTSHHHHHHHHHH-CCEEEEEESCHHHHHHHHHTCCSCTTEEEEECCTTTCCC
T ss_pred             HHHHHHHHHhcC---CCCCCEEEEECCCCCHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHhhcCCCeEEEECccccCCC
Confidence            344566677666   5667899999999999999999987 789999999 9998887653    689999999987 55


Q ss_pred             Cc--ccEEEeecC
Q 034578           80 PN--ADAVFMKVA   90 (90)
Q Consensus        80 p~--~D~i~l~~v   90 (90)
                      +.  +|+|++.++
T Consensus       117 ~~~~fD~v~~~~~  129 (266)
T 3ujc_A          117 PENNFDLIYSRDA  129 (266)
T ss_dssp             CTTCEEEEEEESC
T ss_pred             CCCcEEEEeHHHH
Confidence            43  999998753

>2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans agrobacterium tumefaciens, structural genomics, PSI-2; HET: SAH; 1.95A {Agrobacterium tumefaciens str}

Probab=99.48  E-value=1.7e-13  Score=88.75  Aligned_cols=84  Identities=13%  Similarity=0.199  Sum_probs=69.3

Q ss_pred             chhhhHHHHHhhcccCCCCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeeh-HHHHHhCCC-CCCeeEEEecCCCCCC-
Q 034578            4 TTKITMKAFVSHYKVDGFNNIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDL-QHVIATAPT-HEGVSHVGGDMFDAIP-   80 (90)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~-~~rv~~~~~d~~~~~p-   80 (90)
                      .+...+..+++.++   ..+..+|||+|||+|.++..+++++|..+++++|+ |.+++.+++ .++++++.+|+.+..+ 
T Consensus        17 ~~~~~~~~l~~~~~---~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~d~~~~~~~   93 (259)
T 2p35_A           17 ERTRPARDLLAQVP---LERVLNGYDLGCGPGNSTELLTDRYGVNVITGIDSDDDMLEKAADRLPNTNFGKADLATWKPA   93 (259)
T ss_dssp             GGGHHHHHHHTTCC---CSCCSSEEEETCTTTHHHHHHHHHHCTTSEEEEESCHHHHHHHHHHSTTSEEEECCTTTCCCS
T ss_pred             HHHHHHHHHHHhcC---CCCCCEEEEecCcCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhCCCcEEEECChhhcCcc
Confidence            34455667777776   55678999999999999999999999999999999 999998876 4789999999987223 


Q ss_pred             c-ccEEEeecC
Q 034578           81 N-ADAVFMKVA   90 (90)
Q Consensus        81 ~-~D~i~l~~v   90 (90)
                      . +|+|+++++
T Consensus        94 ~~fD~v~~~~~  104 (259)
T 2p35_A           94 QKADLLYANAV  104 (259)
T ss_dssp             SCEEEEEEESC
T ss_pred             CCcCEEEEeCc
Confidence            2 999998753

>1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21

Probab=99.48  E-value=3.4e-13  Score=87.29  Aligned_cols=81  Identities=19%  Similarity=0.248  Sum_probs=66.1

Q ss_pred             hhhhHHHHHhhcccCCCCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeeh-HHHHHhCCC-------CCCeeEEEecCC
Q 034578            5 TKITMKAFVSHYKVDGFNNIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDL-QHVIATAPT-------HEGVSHVGGDMF   76 (90)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~-------~~rv~~~~~d~~   76 (90)
                      +....+.+++.++   ..+..+|||||||+|.++..+++.+ +.+++++|+ |.+++.+++       .++++++.+|+.
T Consensus        21 ~~~~~~~l~~~~~---~~~~~~VLDiGcG~G~~~~~la~~~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~v~~~~~d~~   96 (256)
T 1nkv_A           21 TEEKYATLGRVLR---MKPGTRILDLGSGSGEMLCTWARDH-GITGTGIDMSSLFTAQAKRRAEELGVSERVHFIHNDAA   96 (256)
T ss_dssp             CHHHHHHHHHHTC---CCTTCEEEEETCTTCHHHHHHHHHT-CCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCCT
T ss_pred             CHHHHHHHHHhcC---CCCCCEEEEECCCCCHHHHHHHHhc-CCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEECChH
Confidence            4455677777776   5677899999999999999999988 678999999 999988865       258999999998


Q ss_pred             C-CCCc-ccEEEeec
Q 034578           77 D-AIPN-ADAVFMKV   89 (90)
Q Consensus        77 ~-~~p~-~D~i~l~~   89 (90)
                      + +.+. +|+|++..
T Consensus        97 ~~~~~~~fD~V~~~~  111 (256)
T 1nkv_A           97 GYVANEKCDVAACVG  111 (256)
T ss_dssp             TCCCSSCEEEEEEES
T ss_pred             hCCcCCCCCEEEECC
Confidence            7 3333 99999764

>3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin metabolism, S-adenosyl-methionine; 1.80A {Geobacter metallireducens} SCOP: c.66.1.0

Probab=99.47  E-value=2.6e-13  Score=85.66  Aligned_cols=80  Identities=18%  Similarity=0.246  Sum_probs=66.5

Q ss_pred             hhHHHHHhhcccCCCCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeeh-HHHHHhCCCC------CCeeEEEecCCCCC
Q 034578            7 ITMKAFVSHYKVDGFNNIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDL-QHVIATAPTH------EGVSHVGGDMFDAI   79 (90)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~------~rv~~~~~d~~~~~   79 (90)
                      .+...+++.++   ..+..+|||+|||+|.++..+++.+|..+++++|+ |.+++.++++      ++++++.+|+.+.+
T Consensus        27 ~i~~~~l~~l~---~~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~  103 (204)
T 3e05_A           27 EVRAVTLSKLR---LQDDLVMWDIGAGSASVSIEASNLMPNGRIFALERNPQYLGFIRDNLKKFVARNVTLVEAFAPEGL  103 (204)
T ss_dssp             HHHHHHHHHTT---CCTTCEEEEETCTTCHHHHHHHHHCTTSEEEEEECCHHHHHHHHHHHHHHTCTTEEEEECCTTTTC
T ss_pred             HHHHHHHHHcC---CCCCCEEEEECCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeCChhhhh
Confidence            34456667776   56678999999999999999999999999999999 9999988762      68999999997743


Q ss_pred             ---CcccEEEeec
Q 034578           80 ---PNADAVFMKV   89 (90)
Q Consensus        80 ---p~~D~i~l~~   89 (90)
                         +.+|+|++..
T Consensus       104 ~~~~~~D~i~~~~  116 (204)
T 3e05_A          104 DDLPDPDRVFIGG  116 (204)
T ss_dssp             TTSCCCSEEEESC
T ss_pred             hcCCCCCEEEECC
Confidence               3499998763

>3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis}

Probab=99.47  E-value=1.2e-13  Score=87.02  Aligned_cols=80  Identities=19%  Similarity=0.384  Sum_probs=64.8

Q ss_pred             hhhHHHHHhhcccCCCCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeeh-HHHHHhCCCC-------CCeeEEEecCCC
Q 034578            6 KITMKAFVSHYKVDGFNNIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDL-QHVIATAPTH-------EGVSHVGGDMFD   77 (90)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~-------~rv~~~~~d~~~   77 (90)
                      ....+.+++.++   ..+. +|||+|||+|.++..++++ |..+++++|+ |.+++.+++.       ++++++.+|+.+
T Consensus        30 ~~~~~~~~~~~~---~~~~-~vLdiG~G~G~~~~~l~~~-~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~  104 (219)
T 3dlc_A           30 PIIAENIINRFG---ITAG-TCIDIGSGPGALSIALAKQ-SDFSIRALDFSKHMNEIALKNIADANLNDRIQIVQGDVHN  104 (219)
T ss_dssp             HHHHHHHHHHHC---CCEE-EEEEETCTTSHHHHHHHHH-SEEEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECBTTB
T ss_pred             HHHHHHHHHhcC---CCCC-EEEEECCCCCHHHHHHHHc-CCCeEEEEECCHHHHHHHHHHHHhccccCceEEEEcCHHH
Confidence            345566666666   3333 9999999999999999998 8899999999 9999888652       589999999987


Q ss_pred             -CCCc--ccEEEeecC
Q 034578           78 -AIPN--ADAVFMKVA   90 (90)
Q Consensus        78 -~~p~--~D~i~l~~v   90 (90)
                       +++.  +|+|++..+
T Consensus       105 ~~~~~~~~D~v~~~~~  120 (219)
T 3dlc_A          105 IPIEDNYADLIVSRGS  120 (219)
T ss_dssp             CSSCTTCEEEEEEESC
T ss_pred             CCCCcccccEEEECch
Confidence             5553  999998753

>1nv8_A HEMK protein; class I adoMet-dependent methyltransferase; HET: SAM MEQ; 2.20A {Thermotoga maritima} SCOP: c.66.1.30 PDB: 1nv9_A* 1vq1_A* 1sg9_A*

Probab=99.46  E-value=8.6e-14  Score=92.84  Aligned_cols=80  Identities=13%  Similarity=0.248  Sum_probs=65.9

Q ss_pred             hhhhHHHHHhhcccCCCCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeeh-HHHHHhCCCC-------CCeeEEEecCC
Q 034578            5 TKITMKAFVSHYKVDGFNNIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDL-QHVIATAPTH-------EGVSHVGGDMF   76 (90)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~-------~rv~~~~~d~~   76 (90)
                      ++.+++.+++.++   ..+..+|||+|||+|.++..+++. |..+++++|+ +.+++.|+++       +|++++.+|++
T Consensus       108 te~lv~~~l~~~~---~~~~~~vLDlG~GsG~~~~~la~~-~~~~v~~vDis~~al~~A~~n~~~~~l~~~v~~~~~D~~  183 (284)
T 1nv8_A          108 TEELVELALELIR---KYGIKTVADIGTGSGAIGVSVAKF-SDAIVFATDVSSKAVEIARKNAERHGVSDRFFVRKGEFL  183 (284)
T ss_dssp             HHHHHHHHHHHHH---HHTCCEEEEESCTTSHHHHHHHHH-SSCEEEEEESCHHHHHHHHHHHHHTTCTTSEEEEESSTT
T ss_pred             HHHHHHHHHHHhc---ccCCCEEEEEeCchhHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHHcCCCCceEEEECcch
Confidence            4556677776665   234578999999999999999999 9999999999 9999988752       46999999999


Q ss_pred             CCCCc-c---cEEEee
Q 034578           77 DAIPN-A---DAVFMK   88 (90)
Q Consensus        77 ~~~p~-~---D~i~l~   88 (90)
                      ++++. +   |+|+.+
T Consensus       184 ~~~~~~f~~~D~Ivsn  199 (284)
T 1nv8_A          184 EPFKEKFASIEMILSN  199 (284)
T ss_dssp             GGGGGGTTTCCEEEEC
T ss_pred             hhcccccCCCCEEEEc
Confidence            86554 8   999875

>3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A*

Probab=99.46  E-value=5.8e-13  Score=86.23  Aligned_cols=80  Identities=18%  Similarity=0.210  Sum_probs=64.5

Q ss_pred             hhHHHHHhhcccCCCCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeeh-HHHHHhCCC-------CCCeeEEEecCCC-
Q 034578            7 ITMKAFVSHYKVDGFNNIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDL-QHVIATAPT-------HEGVSHVGGDMFD-   77 (90)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~-------~~rv~~~~~d~~~-   77 (90)
                      .....+++.+..  +.+..+|||+|||+|.++..+++.+|. +++++|+ |.+++.+++       .++++++.+|+.+ 
T Consensus        32 ~~~~~~l~~l~~--~~~~~~vLDiG~G~G~~~~~l~~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~  108 (257)
T 3f4k_A           32 EATRKAVSFINE--LTDDAKIADIGCGTGGQTLFLADYVKG-QITGIDLFPDFIEIFNENAVKANCADRVKGITGSMDNL  108 (257)
T ss_dssp             HHHHHHHTTSCC--CCTTCEEEEETCTTSHHHHHHHHHCCS-EEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSC
T ss_pred             HHHHHHHHHHhc--CCCCCeEEEeCCCCCHHHHHHHHhCCC-eEEEEECCHHHHHHHHHHHHHcCCCCceEEEECChhhC
Confidence            445566666642  556679999999999999999999986 9999999 999988765       2569999999976 


Q ss_pred             CCC-c-ccEEEeec
Q 034578           78 AIP-N-ADAVFMKV   89 (90)
Q Consensus        78 ~~p-~-~D~i~l~~   89 (90)
                      +++ . +|+|++..
T Consensus       109 ~~~~~~fD~v~~~~  122 (257)
T 3f4k_A          109 PFQNEELDLIWSEG  122 (257)
T ss_dssp             SSCTTCEEEEEEES
T ss_pred             CCCCCCEEEEEecC
Confidence            554 3 99999865

>3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum} PDB: 3jwi_A

Probab=99.45  E-value=9.9e-14  Score=88.23  Aligned_cols=82  Identities=18%  Similarity=0.233  Sum_probs=65.3

Q ss_pred             hhhHHHHHhhcccCCCCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeeh-HHHHHhCCCC-----------CCeeEEEe
Q 034578            6 KITMKAFVSHYKVDGFNNIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDL-QHVIATAPTH-----------EGVSHVGG   73 (90)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~-----------~rv~~~~~   73 (90)
                      ....+.+++.+.   ..+..+|||+|||+|.++..++++.|..+++++|+ |.+++.++++           .+++++.+
T Consensus        15 ~~~~~~l~~~l~---~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~   91 (219)
T 3jwg_A           15 QQRLGTVVAVLK---SVNAKKVIDLGCGEGNLLSLLLKDKSFEQITGVDVSYSVLERAKDRLKIDRLPEMQRKRISLFQS   91 (219)
T ss_dssp             HHHHHHHHHHHH---HTTCCEEEEETCTTCHHHHHHHTSTTCCEEEEEESCHHHHHHHHHHHTGGGSCHHHHTTEEEEEC
T ss_pred             HHHHHHHHHHHh---hcCCCEEEEecCCCCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHhhccccccCcceEEEeC
Confidence            344555666665   34568999999999999999999999999999999 9999988752           28999999


Q ss_pred             cCCC-CCC--cccEEEeecC
Q 034578           74 DMFD-AIP--NADAVFMKVA   90 (90)
Q Consensus        74 d~~~-~~p--~~D~i~l~~v   90 (90)
                      |+.. +.+  .+|+|++..+
T Consensus        92 d~~~~~~~~~~fD~V~~~~~  111 (219)
T 3jwg_A           92 SLVYRDKRFSGYDAATVIEV  111 (219)
T ss_dssp             CSSSCCGGGTTCSEEEEESC
T ss_pred             cccccccccCCCCEEEEHHH
Confidence            9965 332  3999998753

>3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes}

Probab=99.45  E-value=3e-13  Score=88.33  Aligned_cols=81  Identities=16%  Similarity=0.245  Sum_probs=66.7

Q ss_pred             hhhhHHHHHhhcccCCCCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeeh-HHHHHhCCC-------CCCeeEEEecCC
Q 034578            5 TKITMKAFVSHYKVDGFNNIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDL-QHVIATAPT-------HEGVSHVGGDMF   76 (90)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~-------~~rv~~~~~d~~   76 (90)
                      ++...+.+++.++   ..+..+|||||||+|.++..+++++ ..+++++|+ +.+++.+++       .++++++.+|+.
T Consensus        46 ~~~~~~~l~~~~~---~~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~  121 (273)
T 3bus_A           46 TDRLTDEMIALLD---VRSGDRVLDVGCGIGKPAVRLATAR-DVRVTGISISRPQVNQANARATAAGLANRVTFSYADAM  121 (273)
T ss_dssp             HHHHHHHHHHHSC---CCTTCEEEEESCTTSHHHHHHHHHS-CCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTT
T ss_pred             HHHHHHHHHHhcC---CCCCCEEEEeCCCCCHHHHHHHHhc-CCEEEEEeCCHHHHHHHHHHHHhcCCCcceEEEECccc
Confidence            4455677777777   5677899999999999999999987 689999999 998887764       257999999998


Q ss_pred             C-CCCc--ccEEEeec
Q 034578           77 D-AIPN--ADAVFMKV   89 (90)
Q Consensus        77 ~-~~p~--~D~i~l~~   89 (90)
                      + +++.  +|+|++..
T Consensus       122 ~~~~~~~~fD~v~~~~  137 (273)
T 3bus_A          122 DLPFEDASFDAVWALE  137 (273)
T ss_dssp             SCCSCTTCEEEEEEES
T ss_pred             cCCCCCCCccEEEEec
Confidence            7 5553  99999765

>3kr9_A SAM-dependent methyltransferase; class I rossmann-like methyltransferase fold; 2.00A {Streptococcus pneumoniae} PDB: 3ku1_A*

Probab=99.45  E-value=1.3e-13  Score=89.77  Aligned_cols=67  Identities=13%  Similarity=0.098  Sum_probs=58.6

Q ss_pred             CCCeEEEecCCchHHHHHHHHHCCCCeEEEeeh-HHHHHhCCC-------CCCeeEEEecCCCCCC---cccEEEeec
Q 034578           23 NIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDL-QHVIATAPT-------HEGVSHVGGDMFDAIP---NADAVFMKV   89 (90)
Q Consensus        23 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~-------~~rv~~~~~d~~~~~p---~~D~i~l~~   89 (90)
                      +..+|+|||||+|.+++.+++..|..+++++|+ |.+++.|++       .+++++..+|.+++++   .+|+|++..
T Consensus        15 ~g~~VlDIGtGsG~l~i~la~~~~~~~V~avDi~~~al~~A~~N~~~~gl~~~i~~~~~d~l~~l~~~~~~D~IviaG   92 (225)
T 3kr9_A           15 QGAILLDVGSDHAYLPIELVERGQIKSAIAGEVVEGPYQSAVKNVEAHGLKEKIQVRLANGLAAFEETDQVSVITIAG   92 (225)
T ss_dssp             TTEEEEEETCSTTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGCCGGGCCCEEEEEE
T ss_pred             CCCEEEEeCCCcHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEECchhhhcccCcCCCEEEEcC
Confidence            457999999999999999999999999999999 999998876       2589999999998765   389988653

>3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A

Probab=99.45  E-value=1.2e-13  Score=87.76  Aligned_cols=82  Identities=21%  Similarity=0.256  Sum_probs=65.5

Q ss_pred             hhhHHHHHhhcccCCCCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeeh-HHHHHhCCCC-----------CCeeEEEe
Q 034578            6 KITMKAFVSHYKVDGFNNIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDL-QHVIATAPTH-----------EGVSHVGG   73 (90)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~-----------~rv~~~~~   73 (90)
                      ....+.+++.++   ..+..+|||+|||+|.++..+++++|..+++++|+ |.+++.++++           .+++++.+
T Consensus        15 ~~~~~~l~~~l~---~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~   91 (217)
T 3jwh_A           15 QQRMNGVVAALK---QSNARRVIDLGCGQGNLLKILLKDSFFEQITGVDVSYRSLEIAQERLDRLRLPRNQWERLQLIQG   91 (217)
T ss_dssp             HHHHHHHHHHHH---HTTCCEEEEETCTTCHHHHHHHHCTTCSEEEEEESCHHHHHHHHHHHTTCCCCHHHHTTEEEEEC
T ss_pred             HHHHHHHHHHHH---hcCCCEEEEeCCCCCHHHHHHHhhCCCCEEEEEECCHHHHHHHHHHHHHhcCCcccCcceEEEeC
Confidence            344566666666   34568999999999999999999999899999999 9999888652           28999999


Q ss_pred             cCCC-CCC--cccEEEeecC
Q 034578           74 DMFD-AIP--NADAVFMKVA   90 (90)
Q Consensus        74 d~~~-~~p--~~D~i~l~~v   90 (90)
                      |+.. +.+  .+|+|++..+
T Consensus        92 d~~~~~~~~~~fD~v~~~~~  111 (217)
T 3jwh_A           92 ALTYQDKRFHGYDAATVIEV  111 (217)
T ss_dssp             CTTSCCGGGCSCSEEEEESC
T ss_pred             CcccccccCCCcCEEeeHHH
Confidence            9865 332  3999998753

>3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A*

Probab=99.44  E-value=5.9e-13  Score=87.02  Aligned_cols=80  Identities=18%  Similarity=0.179  Sum_probs=64.5

Q ss_pred             hhHHHHHhhcccCCCCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeeh-HHHHHhCCC-------CCCeeEEEecCCC-
Q 034578            7 ITMKAFVSHYKVDGFNNIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDL-QHVIATAPT-------HEGVSHVGGDMFD-   77 (90)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~-------~~rv~~~~~d~~~-   77 (90)
                      .....+++.++.  +.+..+|||||||+|.++..+++. |..+++++|+ |.+++.+++       .++++++.+|+.+ 
T Consensus        32 ~~~~~~l~~l~~--~~~~~~vLDiGcG~G~~~~~la~~-~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~  108 (267)
T 3kkz_A           32 EVTLKALSFIDN--LTEKSLIADIGCGTGGQTMVLAGH-VTGQVTGLDFLSGFIDIFNRNARQSGLQNRVTGIVGSMDDL  108 (267)
T ss_dssp             HHHHHHHTTCCC--CCTTCEEEEETCTTCHHHHHHHTT-CSSEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSC
T ss_pred             HHHHHHHHhccc--CCCCCEEEEeCCCCCHHHHHHHhc-cCCEEEEEeCCHHHHHHHHHHHHHcCCCcCcEEEEcChhhC
Confidence            344556665552  556789999999999999999998 8889999999 999988765       2679999999977 


Q ss_pred             CCCc--ccEEEeec
Q 034578           78 AIPN--ADAVFMKV   89 (90)
Q Consensus        78 ~~p~--~D~i~l~~   89 (90)
                      +++.  +|+|++..
T Consensus       109 ~~~~~~fD~i~~~~  122 (267)
T 3kkz_A          109 PFRNEELDLIWSEG  122 (267)
T ss_dssp             CCCTTCEEEEEESS
T ss_pred             CCCCCCEEEEEEcC
Confidence            5443  99999865

>3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei}

Probab=99.44  E-value=2.7e-13  Score=88.84  Aligned_cols=70  Identities=16%  Similarity=0.345  Sum_probs=60.3

Q ss_pred             CCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeeh-HHHHHhCCCC------CCeeEEEecCCC-CCCc--ccEEEeecC
Q 034578           21 FNNIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDL-QHVIATAPTH------EGVSHVGGDMFD-AIPN--ADAVFMKVA   90 (90)
Q Consensus        21 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~------~rv~~~~~d~~~-~~p~--~D~i~l~~v   90 (90)
                      +.+..+|||||||+|.++..+++.+|..+++++|+ |.+++.+++.      ++++++.+|+.+ +++.  +|+|+++++
T Consensus        35 ~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~  114 (276)
T 3mgg_A           35 YPPGAKVLEAGCGIGAQTVILAKNNPDAEITSIDISPESLEKARENTEKNGIKNVKFLQANIFSLPFEDSSFDHIFVCFV  114 (276)
T ss_dssp             CCTTCEEEETTCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCGGGCCSCTTCEEEEEEESC
T ss_pred             CCCCCeEEEecCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEcccccCCCCCCCeeEEEEech
Confidence            55678999999999999999999999999999999 9999888652      579999999987 4443  999998753

>3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} SCOP: c.66.1.49 PDB: 2gh1_A

Probab=99.44  E-value=3.9e-13  Score=88.89  Aligned_cols=83  Identities=17%  Similarity=0.168  Sum_probs=66.6

Q ss_pred             hhhHHHHHhhcccCCCCCCCeEEEecCCchHHHHHHHHHCCC-CeEEEeeh-HHHHHhCCC-----CCCeeEEEecCCC-
Q 034578            6 KITMKAFVSHYKVDGFNNIRSMVDVGGGTGTVLAEIVKSYPH-IKGINFDL-QHVIATAPT-----HEGVSHVGGDMFD-   77 (90)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~-~~~~~~D~-p~~~~~a~~-----~~rv~~~~~d~~~-   77 (90)
                      ....+.+++.+..  ..+..+|||||||+|.++..+++.+|. .+++++|+ |.+++.+++     ..+++++.+|+.+ 
T Consensus         7 ~~~~~~~~~~~~~--~~~~~~vLDiGcG~G~~~~~l~~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~   84 (284)
T 3gu3_A            7 DDYVSFLVNTVWK--ITKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLLPYDSEFLEGDATEI   84 (284)
T ss_dssp             HHHHHHHHHTTSC--CCSCCEEEEETCTTTHHHHHHTTTSCTTCEEEEEESCHHHHHHHHHHHHSSSSEEEEEESCTTTC
T ss_pred             hHHHHHHHHHHhc--cCCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHhcCCceEEEEcchhhc
Confidence            3445556666542  567789999999999999999999995 89999999 999887765     2489999999988 


Q ss_pred             CCCc-ccEEEeecC
Q 034578           78 AIPN-ADAVFMKVA   90 (90)
Q Consensus        78 ~~p~-~D~i~l~~v   90 (90)
                      +.++ +|+|+++.+
T Consensus        85 ~~~~~fD~v~~~~~   98 (284)
T 3gu3_A           85 ELNDKYDIAICHAF   98 (284)
T ss_dssp             CCSSCEEEEEEESC
T ss_pred             CcCCCeeEEEECCh
Confidence            4454 999998753

>3g07_A 7SK snRNA methylphosphate capping enzyme; structural genomics consortium (SGC), methyltransferase, phosphoprotein, S-adenosyl-L-methionine; HET: SAM; 2.65A {Homo sapiens}

Probab=99.44  E-value=4.4e-13  Score=89.27  Aligned_cols=42  Identities=19%  Similarity=0.348  Sum_probs=38.6

Q ss_pred             CCCeEEEecCCchHHHHHHHHHCCCCeEEEeeh-HHHHHhCCC
Q 034578           23 NIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDL-QHVIATAPT   64 (90)
Q Consensus        23 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~   64 (90)
                      ...+|||||||+|.++..+++++|..+++++|+ +.+++.|++
T Consensus        46 ~~~~VLDiGCG~G~~~~~la~~~~~~~v~gvDis~~~i~~A~~   88 (292)
T 3g07_A           46 RGRDVLDLGCNVGHLTLSIACKWGPSRMVGLDIDSRLIHSARQ   88 (292)
T ss_dssp             TTSEEEEESCTTCHHHHHHHHHTCCSEEEEEESCHHHHHHHHH
T ss_pred             CCCcEEEeCCCCCHHHHHHHHHcCCCEEEEECCCHHHHHHHHH
Confidence            568999999999999999999999999999999 999888764

>1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41

Probab=99.43  E-value=2.9e-13  Score=88.08  Aligned_cols=79  Identities=19%  Similarity=0.283  Sum_probs=64.1

Q ss_pred             hhhHHHHHhhcccCCCCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeeh-HHHHHhCCCC------CCeeEEEecCCC-
Q 034578            6 KITMKAFVSHYKVDGFNNIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDL-QHVIATAPTH------EGVSHVGGDMFD-   77 (90)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~------~rv~~~~~d~~~-   77 (90)
                      ....+.+++.++   ..+..+|||||||+|.++..+++..+  +++++|+ |.+++.+++.      ++++++.+|+.+ 
T Consensus        23 ~~~~~~l~~~l~---~~~~~~vLDiGcG~G~~~~~l~~~~~--~v~gvD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~l   97 (260)
T 1vl5_A           23 GSDLAKLMQIAA---LKGNEEVLDVATGGGHVANAFAPFVK--KVVAFDLTEDILKVARAFIEGNGHQQVEYVQGDAEQM   97 (260)
T ss_dssp             CCCHHHHHHHHT---CCSCCEEEEETCTTCHHHHHHGGGSS--EEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCC-CC
T ss_pred             HHHHHHHHHHhC---CCCCCEEEEEeCCCCHHHHHHHHhCC--EEEEEeCCHHHHHHHHHHHHhcCCCceEEEEecHHhC
Confidence            344566777776   55678999999999999999999875  8999999 9999887652      579999999987 


Q ss_pred             CCCc--ccEEEeec
Q 034578           78 AIPN--ADAVFMKV   89 (90)
Q Consensus        78 ~~p~--~D~i~l~~   89 (90)
                      +++.  +|+|+++.
T Consensus        98 ~~~~~~fD~V~~~~  111 (260)
T 1vl5_A           98 PFTDERFHIVTCRI  111 (260)
T ss_dssp             CSCTTCEEEEEEES
T ss_pred             CCCCCCEEEEEEhh
Confidence            5653  99999875

>2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18

Probab=99.42  E-value=4e-13  Score=88.88  Aligned_cols=81  Identities=11%  Similarity=0.153  Sum_probs=66.0

Q ss_pred             hhhhHHHHHhhc----ccCCCCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeeh-HHHHHhCCC-------CCCeeEEE
Q 034578            5 TKITMKAFVSHY----KVDGFNNIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDL-QHVIATAPT-------HEGVSHVG   72 (90)
Q Consensus         5 ~~~~~~~~~~~~----~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~-------~~rv~~~~   72 (90)
                      ++...+.+++.+    .   +.+..+|||+|||+|.++..+++++ +.+++++|+ +.+++.+++       .++++++.
T Consensus        63 ~~~~~~~l~~~l~~~~~---~~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~  138 (297)
T 2o57_A           63 SLRTDEWLASELAMTGV---LQRQAKGLDLGAGYGGAARFLVRKF-GVSIDCLNIAPVQNKRNEEYNNQAGLADNITVKY  138 (297)
T ss_dssp             HHHHHHHHHHHHHHTTC---CCTTCEEEEETCTTSHHHHHHHHHH-CCEEEEEESCHHHHHHHHHHHHHHTCTTTEEEEE
T ss_pred             HHHHHHHHHHHhhhccC---CCCCCEEEEeCCCCCHHHHHHHHHh-CCEEEEEeCCHHHHHHHHHHHHhcCCCcceEEEE
Confidence            344566777777    4   5667899999999999999999986 469999999 999888765       26899999


Q ss_pred             ecCCC-CCCc--ccEEEeec
Q 034578           73 GDMFD-AIPN--ADAVFMKV   89 (90)
Q Consensus        73 ~d~~~-~~p~--~D~i~l~~   89 (90)
                      +|+.+ +++.  +|+|++..
T Consensus       139 ~d~~~~~~~~~~fD~v~~~~  158 (297)
T 2o57_A          139 GSFLEIPCEDNSYDFIWSQD  158 (297)
T ss_dssp             CCTTSCSSCTTCEEEEEEES
T ss_pred             cCcccCCCCCCCEeEEEecc
Confidence            99988 5553  99999875

>3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus}

Probab=99.41  E-value=4.2e-13  Score=85.09  Aligned_cols=80  Identities=19%  Similarity=0.303  Sum_probs=66.6

Q ss_pred             hHHHHHhhcccCCCCCCCeEEEecCCchHHHHHHHHHC-CCCeEEEeeh-HHHHHhCCCC------CCeeEEEecCCC-C
Q 034578            8 TMKAFVSHYKVDGFNNIRSMVDVGGGTGTVLAEIVKSY-PHIKGINFDL-QHVIATAPTH------EGVSHVGGDMFD-A   78 (90)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~-p~~~~~~~D~-p~~~~~a~~~------~rv~~~~~d~~~-~   78 (90)
                      ..+.+++.++   ..+..+|||+|||+|.++..+++.. |..+++++|+ +.+++.+++.      ++++++.+|+.+ +
T Consensus        25 ~~~~~~~~~~---~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~  101 (219)
T 3dh0_A           25 DPEKVLKEFG---LKEGMTVLDVGTGAGFYLPYLSKMVGEKGKVYAIDVQEEMVNYAWEKVNKLGLKNVEVLKSEENKIP  101 (219)
T ss_dssp             CHHHHHHHHT---CCTTCEEEESSCTTCTTHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHHHHTCTTEEEEECBTTBCS
T ss_pred             CHHHHHHHhC---CCCCCEEEEEecCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHcCCCcEEEEecccccCC
Confidence            3566777776   5667899999999999999999997 8899999999 9999888752      579999999987 4


Q ss_pred             CCc--ccEEEeecC
Q 034578           79 IPN--ADAVFMKVA   90 (90)
Q Consensus        79 ~p~--~D~i~l~~v   90 (90)
                      ++.  +|+|++..+
T Consensus       102 ~~~~~fD~v~~~~~  115 (219)
T 3dh0_A          102 LPDNTVDFIFMAFT  115 (219)
T ss_dssp             SCSSCEEEEEEESC
T ss_pred             CCCCCeeEEEeehh
Confidence            543  999998753

>2yxd_A Probable cobalt-precorrin-6Y C(15)-methyltransfer [decarboxylating]; alpha and beta protein (A/B) class; HET: MES; 2.30A {Methanocaldococcus jannaschii}

Probab=99.41  E-value=1.9e-13  Score=84.03  Aligned_cols=80  Identities=19%  Similarity=0.238  Sum_probs=65.8

Q ss_pred             hhhhHHHHHhhcccCCCCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeeh-HHHHHhCCCC------CCeeEEEecCCC
Q 034578            5 TKITMKAFVSHYKVDGFNNIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDL-QHVIATAPTH------EGVSHVGGDMFD   77 (90)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~------~rv~~~~~d~~~   77 (90)
                      ...+.+.+++.++   ..+..+|||+|||+|.++..+++  +..+++++|+ |.+++.++++      ++++++.+|+.+
T Consensus        20 ~~~~~~~~~~~~~---~~~~~~vLdiG~G~G~~~~~l~~--~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~   94 (183)
T 2yxd_A           20 KEEIRAVSIGKLN---LNKDDVVVDVGCGSGGMTVEIAK--RCKFVYAIDYLDGAIEVTKQNLAKFNIKNCQIIKGRAED   94 (183)
T ss_dssp             CHHHHHHHHHHHC---CCTTCEEEEESCCCSHHHHHHHT--TSSEEEEEECSHHHHHHHHHHHHHTTCCSEEEEESCHHH
T ss_pred             HHHHHHHHHHHcC---CCCCCEEEEeCCCCCHHHHHHHh--cCCeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEECCccc
Confidence            3455667777776   55678999999999999999999  7899999999 9999888762      689999999987


Q ss_pred             CCC--cccEEEeec
Q 034578           78 AIP--NADAVFMKV   89 (90)
Q Consensus        78 ~~p--~~D~i~l~~   89 (90)
                      +++  .+|+|++..
T Consensus        95 ~~~~~~~D~i~~~~  108 (183)
T 2yxd_A           95 VLDKLEFNKAFIGG  108 (183)
T ss_dssp             HGGGCCCSEEEECS
T ss_pred             cccCCCCcEEEECC
Confidence            555  399999865

>3lec_A NADB-rossmann superfamily protein; PSI, MCSG, structural genomics, midwest CENT structural genomics, protein structure initiative; 1.80A {Streptococcus agalactiae}

Probab=99.41  E-value=3.5e-13  Score=88.02  Aligned_cols=67  Identities=12%  Similarity=0.020  Sum_probs=58.4

Q ss_pred             CCCeEEEecCCchHHHHHHHHHCCCCeEEEeeh-HHHHHhCCC-------CCCeeEEEecCCCCCC---cccEEEeec
Q 034578           23 NIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDL-QHVIATAPT-------HEGVSHVGGDMFDAIP---NADAVFMKV   89 (90)
Q Consensus        23 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~-------~~rv~~~~~d~~~~~p---~~D~i~l~~   89 (90)
                      +..+|+|||||+|.+++.+++..|..+++++|+ |.+++.|++       .+++++..+|.++.++   .+|+|++..
T Consensus        21 ~g~~VlDIGtGsG~l~i~la~~~~~~~V~AvDi~~~al~~A~~N~~~~gl~~~I~~~~gD~l~~~~~~~~~D~IviaG   98 (230)
T 3lec_A           21 KGARLLDVGSDHAYLPIFLLQMGYCDFAIAGEVVNGPYQSALKNVSEHGLTSKIDVRLANGLSAFEEADNIDTITICG   98 (230)
T ss_dssp             TTEEEEEETCSTTHHHHHHHHTTCEEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGCCGGGCCCEEEEEE
T ss_pred             CCCEEEEECCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhhccccccccCEEEEeC
Confidence            457999999999999999999999999999999 999998876       2689999999999553   389988654

>3gnl_A Uncharacterized protein, DUF633, LMOF2365_1472; structural genomics, PSI-2, protein structure initiative; 1.50A {Listeria monocytogenes str}

Probab=99.41  E-value=2.4e-13  Score=89.51  Aligned_cols=67  Identities=15%  Similarity=0.177  Sum_probs=58.4

Q ss_pred             CCCeEEEecCCchHHHHHHHHHCCCCeEEEeeh-HHHHHhCCC-------CCCeeEEEecCCCCCC--c-ccEEEeec
Q 034578           23 NIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDL-QHVIATAPT-------HEGVSHVGGDMFDAIP--N-ADAVFMKV   89 (90)
Q Consensus        23 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~-------~~rv~~~~~d~~~~~p--~-~D~i~l~~   89 (90)
                      +..+|+|||||+|.+++.+++..|..+++++|+ |.+++.|++       .+++++..+|.++.++  . +|+|++..
T Consensus        21 ~g~~VlDIGtGsG~l~i~la~~~~~~~V~avDi~~~al~~A~~N~~~~gl~~~I~v~~gD~l~~~~~~~~~D~Iviag   98 (244)
T 3gnl_A           21 KNERIADIGSDHAYLPCFAVKNQTASFAIAGEVVDGPFQSAQKQVRSSGLTEQIDVRKGNGLAVIEKKDAIDTIVIAG   98 (244)
T ss_dssp             SSEEEEEETCSTTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGCCGGGCCCEEEEEE
T ss_pred             CCCEEEEECCccHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEecchhhccCccccccEEEEeC
Confidence            457999999999999999999999999999999 999998876       2679999999999654  2 89988653

>3uwp_A Histone-lysine N-methyltransferase, H3 lysine-79; epigenetics, tubercidin, structu genomics, structural genomics consortium, SGC; HET: 5ID; 2.05A {Homo sapiens} PDB: 4eqz_A* 3sx0_A* 4er0_A* 4er7_A* 1nw3_A* 4er6_A* 4er5_A* 3qow_A* 3qox_A* 4ek9_A* 4ekg_A* 4eki_A* 4er3_A* 3sr4_A*

Probab=99.40  E-value=5e-13  Score=93.73  Aligned_cols=81  Identities=17%  Similarity=0.256  Sum_probs=66.1

Q ss_pred             hhhHHHHHhhcccCCCCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeeh-HHHHHhCCC---------------CCCee
Q 034578            6 KITMKAFVSHYKVDGFNNIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDL-QHVIATAPT---------------HEGVS   69 (90)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~---------------~~rv~   69 (90)
                      ......+++.+.   ..+..+|||||||+|.++..+++.++..+++++|+ |.+++.|++               .++++
T Consensus       159 ~~~i~~il~~l~---l~~gd~VLDLGCGtG~l~l~lA~~~g~~kVvGIDiS~~~lelAr~n~e~frkr~~~~Gl~~~rVe  235 (438)
T 3uwp_A          159 FDLVAQMIDEIK---MTDDDLFVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAETMDREFRKWMKWYGKKHAEYT  235 (438)
T ss_dssp             HHHHHHHHHHHC---CCTTCEEEEESCTTSHHHHHHHHHCCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHHTBCCCEEE
T ss_pred             HHHHHHHHHhcC---CCCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHHHHHHHHhCCCCCCeE
Confidence            345677777776   66778999999999999999999888778999999 888777653               26899


Q ss_pred             EEEecCCC-CC----CcccEEEeec
Q 034578           70 HVGGDMFD-AI----PNADAVFMKV   89 (90)
Q Consensus        70 ~~~~d~~~-~~----p~~D~i~l~~   89 (90)
                      |+.+|+++ ++    +.+|+|++++
T Consensus       236 fi~GD~~~lp~~d~~~~aDVVf~Nn  260 (438)
T 3uwp_A          236 LERGDFLSEEWRERIANTSVIFVNN  260 (438)
T ss_dssp             EEECCTTSHHHHHHHHTCSEEEECC
T ss_pred             EEECcccCCccccccCCccEEEEcc
Confidence            99999998 44    2489999764

>1pjz_A Thiopurine S-methyltransferase; polymorphism, S-adenosylmethionine, drug metabolism; NMR {Pseudomonas syringae PV} SCOP: c.66.1.36

Probab=99.40  E-value=3.4e-13  Score=85.62  Aligned_cols=73  Identities=12%  Similarity=0.122  Sum_probs=58.4

Q ss_pred             HHHhhcccCCCCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeeh-HHHHHhCCC------------------CCCeeEE
Q 034578           11 AFVSHYKVDGFNNIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDL-QHVIATAPT------------------HEGVSHV   71 (90)
Q Consensus        11 ~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~------------------~~rv~~~   71 (90)
                      .+++.+.   ..+..+|||+|||+|..+..++++  ..+++++|+ +.|++.|++                  ..+++++
T Consensus        13 ~~~~~l~---~~~~~~vLD~GCG~G~~~~~la~~--g~~V~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~v~~~   87 (203)
T 1pjz_A           13 QYWSSLN---VVPGARVLVPLCGKSQDMSWLSGQ--GYHVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIW   87 (203)
T ss_dssp             HHHHHHC---CCTTCEEEETTTCCSHHHHHHHHH--CCEEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEE
T ss_pred             HHHHhcc---cCCCCEEEEeCCCCcHhHHHHHHC--CCeEEEEeCCHHHHHHHHHHccCCcccccccccccccCCccEEE
Confidence            3444454   456789999999999999999997  569999999 999998764                  2579999


Q ss_pred             EecCCC-CCC---cccEEEee
Q 034578           72 GGDMFD-AIP---NADAVFMK   88 (90)
Q Consensus        72 ~~d~~~-~~p---~~D~i~l~   88 (90)
                      .+|+++ +.+   .||+|+.+
T Consensus        88 ~~d~~~l~~~~~~~fD~v~~~  108 (203)
T 1pjz_A           88 CGDFFALTARDIGHCAAFYDR  108 (203)
T ss_dssp             EECCSSSTHHHHHSEEEEEEE
T ss_pred             ECccccCCcccCCCEEEEEEC
Confidence            999988 433   39999864

>3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1, putative methyltransferase; 1.90A {Anabaena variabilis atcc 29413}

Probab=99.40  E-value=4.7e-13  Score=88.04  Aligned_cols=79  Identities=18%  Similarity=0.193  Sum_probs=64.1

Q ss_pred             hhHHHHHhhcccCCCCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeeh-HHHHHhCCCC-CCeeEEEecCCC-CCCc-c
Q 034578            7 ITMKAFVSHYKVDGFNNIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDL-QHVIATAPTH-EGVSHVGGDMFD-AIPN-A   82 (90)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~-~rv~~~~~d~~~-~~p~-~   82 (90)
                      ...+.+++.++   ..+..+|||||||+|.++..+++  |..+++++|+ |.+++.+++. +++++..+|+.+ +++. +
T Consensus        44 ~~~~~l~~~l~---~~~~~~vLDiGcG~G~~~~~l~~--~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~f  118 (279)
T 3ccf_A           44 QYGEDLLQLLN---PQPGEFILDLGCGTGQLTEKIAQ--SGAEVLGTDNAATMIEKARQNYPHLHFDVADARNFRVDKPL  118 (279)
T ss_dssp             SSCCHHHHHHC---CCTTCEEEEETCTTSHHHHHHHH--TTCEEEEEESCHHHHHHHHHHCTTSCEEECCTTTCCCSSCE
T ss_pred             HHHHHHHHHhC---CCCCCEEEEecCCCCHHHHHHHh--CCCeEEEEECCHHHHHHHHhhCCCCEEEECChhhCCcCCCc
Confidence            34455666665   45668999999999999999998  7889999999 9999988763 689999999987 4444 9


Q ss_pred             cEEEeecC
Q 034578           83 DAVFMKVA   90 (90)
Q Consensus        83 D~i~l~~v   90 (90)
                      |+|+++++
T Consensus       119 D~v~~~~~  126 (279)
T 3ccf_A          119 DAVFSNAM  126 (279)
T ss_dssp             EEEEEESC
T ss_pred             CEEEEcch
Confidence            99998753

>3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold, methyltransferase fold, SAM-dependent methyltransferase; HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB: 3vc2_A* 4f84_A* 4f85_A 4f86_A*

Probab=99.40  E-value=7.2e-13  Score=88.62  Aligned_cols=78  Identities=14%  Similarity=0.162  Sum_probs=63.4

Q ss_pred             HHHHHhhcccCCCCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeeh-HHHHHhCCC-------CCCeeEEEecCCC-CC
Q 034578            9 MKAFVSHYKVDGFNNIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDL-QHVIATAPT-------HEGVSHVGGDMFD-AI   79 (90)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~-------~~rv~~~~~d~~~-~~   79 (90)
                      .+.+++.++.  +.+..+|||+|||+|.++..+++++ ..+++++|+ +.+++.+++       .++++++.+|+.+ ++
T Consensus       105 ~~~l~~~l~~--~~~~~~vLDiGcG~G~~~~~la~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~  181 (312)
T 3vc1_A          105 AEFLMDHLGQ--AGPDDTLVDAGCGRGGSMVMAHRRF-GSRVEGVTLSAAQADFGNRRARELRIDDHVRSRVCNMLDTPF  181 (312)
T ss_dssp             HHHHHTTSCC--CCTTCEEEEESCTTSHHHHHHHHHH-CCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCCC
T ss_pred             HHHHHHHhcc--CCCCCEEEEecCCCCHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCceEEEECChhcCCC
Confidence            3456666652  4567899999999999999999986 578999999 999988875       2589999999987 55


Q ss_pred             C-c-ccEEEeec
Q 034578           80 P-N-ADAVFMKV   89 (90)
Q Consensus        80 p-~-~D~i~l~~   89 (90)
                      + . +|+|++..
T Consensus       182 ~~~~fD~V~~~~  193 (312)
T 3vc1_A          182 DKGAVTASWNNE  193 (312)
T ss_dssp             CTTCEEEEEEES
T ss_pred             CCCCEeEEEECC
Confidence            5 3 99999865

>2b3t_A Protein methyltransferase HEMK; translation termination, methylation, conformational changes; HET: SAH; 3.10A {Escherichia coli} SCOP: c.66.1.30 PDB: 1t43_A*

Probab=99.40  E-value=7.3e-13  Score=87.37  Aligned_cols=80  Identities=16%  Similarity=0.303  Sum_probs=65.8

Q ss_pred             hhhhHHHHHhhcccCCCCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeeh-HHHHHhCCCC------CCeeEEEecCCC
Q 034578            5 TKITMKAFVSHYKVDGFNNIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDL-QHVIATAPTH------EGVSHVGGDMFD   77 (90)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~------~rv~~~~~d~~~   77 (90)
                      ++.+++.+++.++    .+..+|||+|||+|.++..+++.+|..+++++|+ |.+++.++++      ++++++.+|+++
T Consensus        95 te~l~~~~l~~~~----~~~~~vLDlG~GsG~~~~~la~~~~~~~v~~vD~s~~~l~~a~~n~~~~~~~~v~~~~~d~~~  170 (276)
T 2b3t_A           95 TECLVEQALARLP----EQPCRILDLGTGTGAIALALASERPDCEIIAVDRMPDAVSLAQRNAQHLAIKNIHILQSDWFS  170 (276)
T ss_dssp             HHHHHHHHHHHSC----SSCCEEEEETCTTSHHHHHHHHHCTTSEEEEECSSHHHHHHHHHHHHHHTCCSEEEECCSTTG
T ss_pred             HHHHHHHHHHhcc----cCCCEEEEecCCccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEcchhh
Confidence            4556666666553    2456999999999999999999999999999999 9999988762      479999999988


Q ss_pred             CCC--cccEEEee
Q 034578           78 AIP--NADAVFMK   88 (90)
Q Consensus        78 ~~p--~~D~i~l~   88 (90)
                      +++  .+|+|+++
T Consensus       171 ~~~~~~fD~Iv~n  183 (276)
T 2b3t_A          171 ALAGQQFAMIVSN  183 (276)
T ss_dssp             GGTTCCEEEEEEC
T ss_pred             hcccCCccEEEEC
Confidence            653  39999985

>1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43

Probab=99.39  E-value=6.7e-13  Score=84.34  Aligned_cols=65  Identities=17%  Similarity=0.172  Sum_probs=56.0

Q ss_pred             CCCeEEEecCCchHHHHHHHHHCCCCeEEEeeh-HHHHHhCCCC-----CCeeEEEecCCC-CCC--cccEEEeec
Q 034578           23 NIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDL-QHVIATAPTH-----EGVSHVGGDMFD-AIP--NADAVFMKV   89 (90)
Q Consensus        23 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~-----~rv~~~~~d~~~-~~p--~~D~i~l~~   89 (90)
                      +..+|||+|||+|.++..+++..|  +++++|+ |.+++.++++     .+++++.+|+.+ +++  .+|+|+++.
T Consensus        38 ~~~~vLDlG~G~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~  111 (227)
T 1ve3_A           38 KRGKVLDLACGVGGFSFLLEDYGF--EVVGVDISEDMIRKAREYAKSRESNVEFIVGDARKLSFEDKTFDYVIFID  111 (227)
T ss_dssp             SCCEEEEETCTTSHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTTCCCEEEECCTTSCCSCTTCEEEEEEES
T ss_pred             CCCeEEEEeccCCHHHHHHHHcCC--EEEEEECCHHHHHHHHHHHHhcCCCceEEECchhcCCCCCCcEEEEEEcC
Confidence            467999999999999999999887  8999999 9999888752     789999999988 554  399999875

>3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae}

Probab=99.39  E-value=6.4e-13  Score=81.66  Aligned_cols=79  Identities=19%  Similarity=0.322  Sum_probs=63.5

Q ss_pred             hhHHHHHhhcccCCCCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeeh-HHHHHhCCC-------CCCeeEEEecCCCC
Q 034578            7 ITMKAFVSHYKVDGFNNIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDL-QHVIATAPT-------HEGVSHVGGDMFDA   78 (90)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~-------~~rv~~~~~d~~~~   78 (90)
                      .....+++.+.   ..+..+|||+|||+|.++..+++.+|..+++++|+ |.+++.+++       .+++ ++.+|..+.
T Consensus        12 ~~~~~~~~~~~---~~~~~~vldiG~G~G~~~~~l~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~-~~~~d~~~~   87 (178)
T 3hm2_A           12 HVRALAISALA---PKPHETLWDIGGGSGSIAIEWLRSTPQTTAVCFEISEERRERILSNAINLGVSDRI-AVQQGAPRA   87 (178)
T ss_dssp             HHHHHHHHHHC---CCTTEEEEEESTTTTHHHHHHHTTSSSEEEEEECSCHHHHHHHHHHHHTTTCTTSE-EEECCTTGG
T ss_pred             HHHHHHHHHhc---ccCCCeEEEeCCCCCHHHHHHHHHCCCCeEEEEeCCHHHHHHHHHHHHHhCCCCCE-EEecchHhh
Confidence            34556666666   55677999999999999999999999999999999 999988864       1378 888998764


Q ss_pred             C----CcccEEEeec
Q 034578           79 I----PNADAVFMKV   89 (90)
Q Consensus        79 ~----p~~D~i~l~~   89 (90)
                      +    ..+|+|++..
T Consensus        88 ~~~~~~~~D~i~~~~  102 (178)
T 3hm2_A           88 FDDVPDNPDVIFIGG  102 (178)
T ss_dssp             GGGCCSCCSEEEECC
T ss_pred             hhccCCCCCEEEECC
Confidence            3    2399999764

>1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A*

Probab=99.39  E-value=1.1e-12  Score=84.71  Aligned_cols=81  Identities=15%  Similarity=0.270  Sum_probs=66.2

Q ss_pred             chhhhHHHHHhhcccCCCCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeeh-HHHHHhCCCC------CCeeEEEecCC
Q 034578            4 TTKITMKAFVSHYKVDGFNNIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDL-QHVIATAPTH------EGVSHVGGDMF   76 (90)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~------~rv~~~~~d~~   76 (90)
                      .+......+++.++   ..+..+|||+|||+|.++..+++..+  +++++|+ |.+++.+++.      ++++++.+|+.
T Consensus         5 ~~~~~~~~~~~~~~---~~~~~~vLDiGcG~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~   79 (239)
T 1xxl_A            5 HHHHSLGLMIKTAE---CRAEHRVLDIGAGAGHTALAFSPYVQ--ECIGVDATKEMVEVASSFAQEKGVENVRFQQGTAE   79 (239)
T ss_dssp             -CHHHHHHHHHHHT---CCTTCEEEEESCTTSHHHHHHGGGSS--EEEEEESCHHHHHHHHHHHHHHTCCSEEEEECBTT
T ss_pred             ccCCCcchHHHHhC---cCCCCEEEEEccCcCHHHHHHHHhCC--EEEEEECCHHHHHHHHHHHHHcCCCCeEEEecccc
Confidence            45556677777777   67788999999999999999999875  8999999 9999887652      67999999997


Q ss_pred             C-CCCc--ccEEEeec
Q 034578           77 D-AIPN--ADAVFMKV   89 (90)
Q Consensus        77 ~-~~p~--~D~i~l~~   89 (90)
                      + +++.  +|+|++.+
T Consensus        80 ~~~~~~~~fD~v~~~~   95 (239)
T 1xxl_A           80 SLPFPDDSFDIITCRY   95 (239)
T ss_dssp             BCCSCTTCEEEEEEES
T ss_pred             cCCCCCCcEEEEEECC
Confidence            6 5543  99999875

>3q87_B N6 adenine specific DNA methylase; SAM-methyltransferase, methyltransferase, methylation, trans activator-transferase complex; HET: SAM; 2.00A {Encephalitozoon cuniculi}

Probab=99.39  E-value=1.2e-12  Score=81.07  Aligned_cols=60  Identities=23%  Similarity=0.442  Sum_probs=53.0

Q ss_pred             CCCeEEEecCCchHHHHHHHHHCCCCeEEEeeh-HHHHHhCCCCCCeeEEEecCCCCCC-c-ccEEEee
Q 034578           23 NIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDL-QHVIATAPTHEGVSHVGGDMFDAIP-N-ADAVFMK   88 (90)
Q Consensus        23 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~~rv~~~~~d~~~~~p-~-~D~i~l~   88 (90)
                      +..+|||+|||+|.++..++++.   +++++|+ |.+++.   ..+++++.+|+.++++ . +|+|+++
T Consensus        23 ~~~~vLD~GcG~G~~~~~l~~~~---~v~gvD~s~~~~~~---~~~~~~~~~d~~~~~~~~~fD~i~~n   85 (170)
T 3q87_B           23 EMKIVLDLGTSTGVITEQLRKRN---TVVSTDLNIRALES---HRGGNLVRADLLCSINQESVDVVVFN   85 (170)
T ss_dssp             CSCEEEEETCTTCHHHHHHTTTS---EEEEEESCHHHHHT---CSSSCEEECSTTTTBCGGGCSEEEEC
T ss_pred             CCCeEEEeccCccHHHHHHHhcC---cEEEEECCHHHHhc---ccCCeEEECChhhhcccCCCCEEEEC
Confidence            45699999999999999999987   9999999 999988   5679999999988665 3 9999975

>3hem_A Cyclopropane-fatty-acyl-phospholipid synthase 2; protein-ligand complex, cytoplasm, lipid synthesis, methyltransferase; HET: D22; 2.39A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kpi_A*

Probab=99.39  E-value=1.3e-12  Score=86.79  Aligned_cols=77  Identities=14%  Similarity=0.161  Sum_probs=63.7

Q ss_pred             hHHHHHhhcccCCCCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeeh-HHHHHhCCC-------CCCeeEEEecCCCCC
Q 034578            8 TMKAFVSHYKVDGFNNIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDL-QHVIATAPT-------HEGVSHVGGDMFDAI   79 (90)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~-------~~rv~~~~~d~~~~~   79 (90)
                      ..+.+++.++   ..+..+|||||||+|.++..++++++ .+++++|+ |.+++.+++       .++++++.+|+.+. 
T Consensus        60 ~~~~~~~~~~---~~~~~~vLDiGcG~G~~~~~la~~~~-~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-  134 (302)
T 3hem_A           60 KRKLALDKLN---LEPGMTLLDIGCGWGSTMRHAVAEYD-VNVIGLTLSENQYAHDKAMFDEVDSPRRKEVRIQGWEEF-  134 (302)
T ss_dssp             HHHHHHHTTC---CCTTCEEEEETCTTSHHHHHHHHHHC-CEEEEEECCHHHHHHHHHHHHHSCCSSCEEEEECCGGGC-
T ss_pred             HHHHHHHHcC---CCCcCEEEEeeccCcHHHHHHHHhCC-CEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECCHHHc-
Confidence            4456677666   56678999999999999999999987 89999999 999988875       24899999999664 


Q ss_pred             Cc-ccEEEeec
Q 034578           80 PN-ADAVFMKV   89 (90)
Q Consensus        80 p~-~D~i~l~~   89 (90)
                      +. +|+|++..
T Consensus       135 ~~~fD~v~~~~  145 (302)
T 3hem_A          135 DEPVDRIVSLG  145 (302)
T ss_dssp             CCCCSEEEEES
T ss_pred             CCCccEEEEcc
Confidence            44 99999864

>3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A*

Probab=99.38  E-value=4.4e-12  Score=79.96  Aligned_cols=78  Identities=24%  Similarity=0.259  Sum_probs=62.6

Q ss_pred             HHHHHhhcccCCCCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeeh-HHHHHhCCCC--CCeeEEEecCCCCCC-c-cc
Q 034578            9 MKAFVSHYKVDGFNNIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDL-QHVIATAPTH--EGVSHVGGDMFDAIP-N-AD   83 (90)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~--~rv~~~~~d~~~~~p-~-~D   83 (90)
                      ...+++.+..  ..+..+|||+|||+|.++..++++  ..+++++|+ +.+++.+++.  .+++++.+|+.+..+ . +|
T Consensus        34 ~~~~~~~l~~--~~~~~~vLdiG~G~G~~~~~l~~~--~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~d~~~~~~~~~~D  109 (218)
T 3ou2_A           34 APAALERLRA--GNIRGDVLELASGTGYWTRHLSGL--ADRVTALDGSAEMIAEAGRHGLDNVEFRQQDLFDWTPDRQWD  109 (218)
T ss_dssp             HHHHHHHHTT--TTSCSEEEEESCTTSHHHHHHHHH--SSEEEEEESCHHHHHHHGGGCCTTEEEEECCTTSCCCSSCEE
T ss_pred             HHHHHHHHhc--CCCCCeEEEECCCCCHHHHHHHhc--CCeEEEEeCCHHHHHHHHhcCCCCeEEEecccccCCCCCcee
Confidence            3445555552  445679999999999999999998  679999999 9999988763  689999999987543 3 99


Q ss_pred             EEEeecC
Q 034578           84 AVFMKVA   90 (90)
Q Consensus        84 ~i~l~~v   90 (90)
                      +|++.++
T Consensus       110 ~v~~~~~  116 (218)
T 3ou2_A          110 AVFFAHW  116 (218)
T ss_dssp             EEEEESC
T ss_pred             EEEEech
Confidence            9998753

>4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli}

Probab=99.38  E-value=1.7e-12  Score=89.62  Aligned_cols=76  Identities=18%  Similarity=0.302  Sum_probs=63.8

Q ss_pred             HHHHhhcccCCCCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeeh-HHHHHhCCCC---------CCeeEEEecCCCCC
Q 034578           10 KAFVSHYKVDGFNNIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDL-QHVIATAPTH---------EGVSHVGGDMFDAI   79 (90)
Q Consensus        10 ~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~---------~rv~~~~~d~~~~~   79 (90)
                      +.+++.++   .....+|||+|||+|.++..+++++|..+++++|+ +.+++.++++         .+++++.+|+++++
T Consensus       212 ~~ll~~l~---~~~~~~VLDlGcG~G~~s~~la~~~p~~~V~gvD~s~~al~~Ar~n~~~ngl~~~~~v~~~~~D~~~~~  288 (375)
T 4dcm_A          212 RFFMQHLP---ENLEGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALSGV  288 (375)
T ss_dssp             HHHHHTCC---CSCCSEEEEETCTTCHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCGGGGGGEEEEECSTTTTC
T ss_pred             HHHHHhCc---ccCCCeEEEEeCcchHHHHHHHHHCCCCEEEEEECcHHHHHHHHHHHHHcCCCcCceEEEEechhhccC
Confidence            45667676   34458999999999999999999999999999999 9999988762         26889999999876


Q ss_pred             Cc--ccEEEee
Q 034578           80 PN--ADAVFMK   88 (90)
Q Consensus        80 p~--~D~i~l~   88 (90)
                      +.  ||+|+++
T Consensus       289 ~~~~fD~Ii~n  299 (375)
T 4dcm_A          289 EPFRFNAVLCN  299 (375)
T ss_dssp             CTTCEEEEEEC
T ss_pred             CCCCeeEEEEC
Confidence            53  9999974

>4dzr_A Protein-(glutamine-N5) methyltransferase, release specific; structural genomics, PSI-biology; 2.55A {Alicyclobacillus acidocaldarius subsp}

Probab=99.37  E-value=1.1e-13  Score=87.01  Aligned_cols=82  Identities=20%  Similarity=0.287  Sum_probs=56.4

Q ss_pred             hhhhHHHHHhhcccCCCCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeeh-HHHHHhCCCC-----CCeeEEEecCCCC
Q 034578            5 TKITMKAFVSHYKVDGFNNIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDL-QHVIATAPTH-----EGVSHVGGDMFDA   78 (90)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~-----~rv~~~~~d~~~~   78 (90)
                      ++.+.+.+++.+..  ..+..+|||+|||+|.++..+++.+|..+++++|+ |.+++.++++     .+++++.+|+.++
T Consensus        14 ~~~~~~~~~~~l~~--~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~   91 (215)
T 4dzr_A           14 TEVLVEEAIRFLKR--MPSGTRVIDVGTGSGCIAVSIALACPGVSVTAVDLSMDALAVARRNAERFGAVVDWAAADGIEW   91 (215)
T ss_dssp             HHHHHHHHHHHHTT--CCTTEEEEEEESSBCHHHHHHHHHCTTEEEEEEECC-------------------CCHHHHHHH
T ss_pred             HHHHHHHHHHHhhh--cCCCCEEEEecCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHhCCceEEEEcchHhh
Confidence            55677778777762  25678999999999999999999999999999999 9999998863     1688999998874


Q ss_pred             C-------CcccEEEee
Q 034578           79 I-------PNADAVFMK   88 (90)
Q Consensus        79 ~-------p~~D~i~l~   88 (90)
                      +       ..+|+|+++
T Consensus        92 ~~~~~~~~~~fD~i~~n  108 (215)
T 4dzr_A           92 LIERAERGRPWHAIVSN  108 (215)
T ss_dssp             HHHHHHTTCCBSEEEEC
T ss_pred             hhhhhhccCcccEEEEC
Confidence            3       239999973

>3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str}

Probab=99.37  E-value=2.3e-12  Score=83.46  Aligned_cols=76  Identities=20%  Similarity=0.193  Sum_probs=61.0

Q ss_pred             HHHhhcccCCCCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeeh-HHHHHhCCC---CCCeeEEEecCCC-CCC-c-cc
Q 034578           11 AFVSHYKVDGFNNIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDL-QHVIATAPT---HEGVSHVGGDMFD-AIP-N-AD   83 (90)
Q Consensus        11 ~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~---~~rv~~~~~d~~~-~~p-~-~D   83 (90)
                      .+++.++   ..+..+|||+|||+|.++..+++..+. +++++|+ +.+++.+++   ..+++++.+|+.+ +++ . +|
T Consensus        35 ~l~~~~~---~~~~~~vLD~GcG~G~~~~~l~~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~~~~~fD  110 (253)
T 3g5l_A           35 ELKKMLP---DFNQKTVLDLGCGFGWHCIYAAEHGAK-KVLGIDLSERMLTEAKRKTTSPVVCYEQKAIEDIAIEPDAYN  110 (253)
T ss_dssp             HHHTTCC---CCTTCEEEEETCTTCHHHHHHHHTTCS-EEEEEESCHHHHHHHHHHCCCTTEEEEECCGGGCCCCTTCEE
T ss_pred             HHHHhhh---ccCCCEEEEECCCCCHHHHHHHHcCCC-EEEEEECCHHHHHHHHHhhccCCeEEEEcchhhCCCCCCCeE
Confidence            3444444   345689999999999999999998664 8999999 999988865   3689999999977 554 3 99


Q ss_pred             EEEeecC
Q 034578           84 AVFMKVA   90 (90)
Q Consensus        84 ~i~l~~v   90 (90)
                      +|++..+
T Consensus       111 ~v~~~~~  117 (253)
T 3g5l_A          111 VVLSSLA  117 (253)
T ss_dssp             EEEEESC
T ss_pred             EEEEchh
Confidence            9998753

>1jsx_A Glucose-inhibited division protein B; methyltransferase fold, structural genomics, PSI, protein structure initiative; 2.40A {Escherichia coli} SCOP: c.66.1.20

Probab=99.37  E-value=1e-12  Score=82.82  Aligned_cols=83  Identities=14%  Similarity=0.147  Sum_probs=63.3

Q ss_pred             hhhHHHHHhhcccCCCCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeeh-HHHHHhCCC------CCCeeEEEecCCCC
Q 034578            6 KITMKAFVSHYKVDGFNNIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDL-QHVIATAPT------HEGVSHVGGDMFDA   78 (90)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~------~~rv~~~~~d~~~~   78 (90)
                      +...+.+++.+......+..+|||+|||+|.++..+++.+|..+++++|+ |.+++.+++      ..+++++.+|+.+.
T Consensus        48 ~~~~~~~~~~l~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~  127 (207)
T 1jsx_A           48 EMLVRHILDSIVVAPYLQGERFIDVGTGPGLPGIPLSIVRPEAHFTLLDSLGKRVRFLRQVQHELKLENIEPVQSRVEEF  127 (207)
T ss_dssp             CHHHHHHHHHHHHGGGCCSSEEEEETCTTTTTHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTTCSSEEEEECCTTTS
T ss_pred             HHHHHHHHhhhhhhhhcCCCeEEEECCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEecchhhC
Confidence            34455666655410011357999999999999999999999999999999 999888765      14599999999884


Q ss_pred             CC--cccEEEee
Q 034578           79 IP--NADAVFMK   88 (90)
Q Consensus        79 ~p--~~D~i~l~   88 (90)
                      .+  .+|+|+++
T Consensus       128 ~~~~~~D~i~~~  139 (207)
T 1jsx_A          128 PSEPPFDGVISR  139 (207)
T ss_dssp             CCCSCEEEEECS
T ss_pred             CccCCcCEEEEe
Confidence            33  39999865

>3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; HET: MSE SAH T8N; 1.12A {Saccharomyces cerevisiae}

Probab=99.37  E-value=3.2e-12  Score=84.84  Aligned_cols=68  Identities=26%  Similarity=0.281  Sum_probs=58.6

Q ss_pred             CCCCeEEEecCCchHHHHHHHHHC-CCCeEEEeeh-HHHHHhCCC--------CCCeeEEEecCCC-CC-C-------cc
Q 034578           22 NNIRSMVDVGGGTGTVLAEIVKSY-PHIKGINFDL-QHVIATAPT--------HEGVSHVGGDMFD-AI-P-------NA   82 (90)
Q Consensus        22 ~~~~~vlDvG~G~G~~~~~l~~~~-p~~~~~~~D~-p~~~~~a~~--------~~rv~~~~~d~~~-~~-p-------~~   82 (90)
                      .+..+|||||||+|.++..+++++ +..+++++|+ |.+++.+++        ..+++++.+|+.+ ++ .       .+
T Consensus        35 ~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~f  114 (299)
T 3g5t_A           35 GERKLLVDVGCGPGTATLQMAQELKPFEQIIGSDLSATMIKTAEVIKEGSPDTYKNVSFKISSSDDFKFLGADSVDKQKI  114 (299)
T ss_dssp             SCCSEEEEETCTTTHHHHHHHHHSSCCSEEEEEESCHHHHHHHHHHHHHCC-CCTTEEEEECCTTCCGGGCTTTTTSSCE
T ss_pred             CCCCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHhccCCCCceEEEEcCHHhCCccccccccCCCe
Confidence            357899999999999999999987 8999999999 999988865        4689999999987 33 2       39


Q ss_pred             cEEEeec
Q 034578           83 DAVFMKV   89 (90)
Q Consensus        83 D~i~l~~   89 (90)
                      |+|++..
T Consensus       115 D~V~~~~  121 (299)
T 3g5t_A          115 DMITAVE  121 (299)
T ss_dssp             EEEEEES
T ss_pred             eEEeHhh
Confidence            9999875

>3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI, intermolecular contacts, R specificity, tetramer, disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB: 3lga_A* 3lhd_C*

Probab=99.36  E-value=2.7e-12  Score=83.29  Aligned_cols=78  Identities=15%  Similarity=0.239  Sum_probs=65.1

Q ss_pred             hHHHHHhhcccCCCCCCCeEEEecCCchHHHHHHHHH-CCCCeEEEeeh-HHHHHhCCC-------CCCeeEEEecCCCC
Q 034578            8 TMKAFVSHYKVDGFNNIRSMVDVGGGTGTVLAEIVKS-YPHIKGINFDL-QHVIATAPT-------HEGVSHVGGDMFDA   78 (90)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~-~p~~~~~~~D~-p~~~~~a~~-------~~rv~~~~~d~~~~   78 (90)
                      .+..++..++   ..+..+|||+|||+|.++..+++. .|..+++++|+ |.+++.|++       .++++++.+|+.+.
T Consensus        81 ~~~~i~~~~~---~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~  157 (255)
T 3mb5_A           81 DAALIVAYAG---ISPGDFIVEAGVGSGALTLFLANIVGPEGRVVSYEIREDFAKLAWENIKWAGFDDRVTIKLKDIYEG  157 (255)
T ss_dssp             HHHHHHHHTT---CCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHTCTTTEEEECSCGGGC
T ss_pred             HHHHHHHhhC---CCCCCEEEEecCCchHHHHHHHHHhCCCeEEEEEecCHHHHHHHHHHHHHcCCCCceEEEECchhhc
Confidence            3455666666   566789999999999999999999 88999999999 999988875       25699999999886


Q ss_pred             CCc--ccEEEee
Q 034578           79 IPN--ADAVFMK   88 (90)
Q Consensus        79 ~p~--~D~i~l~   88 (90)
                      ++.  +|+|++.
T Consensus       158 ~~~~~~D~v~~~  169 (255)
T 3mb5_A          158 IEEENVDHVILD  169 (255)
T ss_dssp             CCCCSEEEEEEC
T ss_pred             cCCCCcCEEEEC
Confidence            654  9999874

>1yzh_A TRNA (guanine-N(7)-)-methyltransferase; alpha-beta-alpha sandwich, S-adenosylmeth dependent, structural genomics, PSI; 2.02A {Streptococcus pneumoniae} SCOP: c.66.1.53

Probab=99.36  E-value=2.6e-12  Score=81.73  Aligned_cols=66  Identities=23%  Similarity=0.380  Sum_probs=57.2

Q ss_pred             CCCeEEEecCCchHHHHHHHHHCCCCeEEEeeh-HHHHHhCCC------CCCeeEEEecCCC-C--CCc--ccEEEee
Q 034578           23 NIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDL-QHVIATAPT------HEGVSHVGGDMFD-A--IPN--ADAVFMK   88 (90)
Q Consensus        23 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~------~~rv~~~~~d~~~-~--~p~--~D~i~l~   88 (90)
                      +..+|||+|||+|.++..+++.+|+.+++++|+ +.+++.+++      .++++++.+|+.+ +  ++.  +|+|++.
T Consensus        41 ~~~~vLDiGcG~G~~~~~la~~~p~~~v~gvD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~D~i~~~  118 (214)
T 1yzh_A           41 DNPIHVEVGSGKGAFVSGMAKQNPDINYIGIDIQKSVLSYALDKVLEVGVPNIKLLWVDGSDLTDYFEDGEIDRLYLN  118 (214)
T ss_dssp             CCCEEEEESCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCCSSEEEEECCSSCGGGTSCTTCCSEEEEE
T ss_pred             CCCeEEEEccCcCHHHHHHHHHCCCCCEEEEEcCHHHHHHHHHHHHHcCCCCEEEEeCCHHHHHhhcCCCCCCEEEEE
Confidence            357899999999999999999999999999999 999988865      2689999999987 3  443  8999875

>3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase, transferase; HET: SAH PG4; 2.70A {Rhodobacter capsulatus}

Probab=99.36  E-value=2.3e-12  Score=81.98  Aligned_cols=76  Identities=21%  Similarity=0.278  Sum_probs=61.9

Q ss_pred             hHHHHHhhcccCCCCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeeh-HHHHHhCCCC------C-CeeEEEecCCCC-
Q 034578            8 TMKAFVSHYKVDGFNNIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDL-QHVIATAPTH------E-GVSHVGGDMFDA-   78 (90)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~------~-rv~~~~~d~~~~-   78 (90)
                      +...+++.++   ..+..+|||+|||+|.++..+++.  ..+++++|+ |.+++.|+++      + +++++.+|+.+. 
T Consensus        43 ~~~~~l~~l~---~~~~~~vLDlGcG~G~~~~~la~~--~~~v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~  117 (204)
T 3njr_A           43 MRALTLAALA---PRRGELLWDIGGGSGSVSVEWCLA--GGRAITIEPRADRIENIQKNIDTYGLSPRMRAVQGTAPAAL  117 (204)
T ss_dssp             HHHHHHHHHC---CCTTCEEEEETCTTCHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCTTGGG
T ss_pred             HHHHHHHhcC---CCCCCEEEEecCCCCHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCCEEEEeCchhhhc
Confidence            3445666666   566789999999999999999998  789999999 9999888752      3 899999999873 


Q ss_pred             --CCcccEEEee
Q 034578           79 --IPNADAVFMK   88 (90)
Q Consensus        79 --~p~~D~i~l~   88 (90)
                        .+.+|+|++.
T Consensus       118 ~~~~~~D~v~~~  129 (204)
T 3njr_A          118 ADLPLPEAVFIG  129 (204)
T ss_dssp             TTSCCCSEEEEC
T ss_pred             ccCCCCCEEEEC
Confidence              3359999875

>1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42

Probab=99.35  E-value=1.1e-12  Score=84.74  Aligned_cols=77  Identities=13%  Similarity=0.242  Sum_probs=62.2

Q ss_pred             HHHHhhcccCCCCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeeh-HHHHHhCCCC----CCeeEEEecCCC-CCCc--
Q 034578           10 KAFVSHYKVDGFNNIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDL-QHVIATAPTH----EGVSHVGGDMFD-AIPN--   81 (90)
Q Consensus        10 ~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~----~rv~~~~~d~~~-~~p~--   81 (90)
                      ..+++.++   ..+..+|||||||+|.++..++++. ..+++++|+ |.+++.+++.    .+++++.+|+.+ +++.  
T Consensus        83 ~~~l~~l~---~~~~~~vLDiG~G~G~~~~~l~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~~  158 (254)
T 1xtp_A           83 RNFIASLP---GHGTSRALDCGAGIGRITKNLLTKL-YATTDLLEPVKHMLEEAKRELAGMPVGKFILASMETATLPPNT  158 (254)
T ss_dssp             HHHHHTST---TCCCSEEEEETCTTTHHHHHTHHHH-CSEEEEEESCHHHHHHHHHHTTTSSEEEEEESCGGGCCCCSSC
T ss_pred             HHHHHhhc---ccCCCEEEEECCCcCHHHHHHHHhh-cCEEEEEeCCHHHHHHHHHHhccCCceEEEEccHHHCCCCCCC
Confidence            45666665   4567899999999999999999886 567999999 9998887652    679999999977 4442  


Q ss_pred             ccEEEeecC
Q 034578           82 ADAVFMKVA   90 (90)
Q Consensus        82 ~D~i~l~~v   90 (90)
                      +|+|++.++
T Consensus       159 fD~v~~~~~  167 (254)
T 1xtp_A          159 YDLIVIQWT  167 (254)
T ss_dssp             EEEEEEESC
T ss_pred             eEEEEEcch
Confidence            999998753

>2h00_A Methyltransferase 10 domain containing protein; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.54

Probab=99.35  E-value=1.9e-12  Score=84.15  Aligned_cols=66  Identities=14%  Similarity=0.124  Sum_probs=55.5

Q ss_pred             CCCeEEEecCCchHHHHHHHHHCCCCeEEEeeh-HHHHHhCCC-------CCCeeEEEecCC----CCCC-----cccEE
Q 034578           23 NIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDL-QHVIATAPT-------HEGVSHVGGDMF----DAIP-----NADAV   85 (90)
Q Consensus        23 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~-------~~rv~~~~~d~~----~~~p-----~~D~i   85 (90)
                      +..+|||+|||+|.++..+++++|..+++++|+ |.+++.|++       .++++++.+|..    ++++     .+|+|
T Consensus        65 ~~~~vLDlG~G~G~~~~~la~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fD~i  144 (254)
T 2h00_A           65 TLRRGIDIGTGASCIYPLLGATLNGWYFLATEVDDMCFNYAKKNVEQNNLSDLIKVVKVPQKTLLMDALKEESEIIYDFC  144 (254)
T ss_dssp             CCCEEEEESCTTTTHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTCSSTTTSTTCCSCCBSEE
T ss_pred             CCCEEEEeCCChhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHcCCCccEEEEEcchhhhhhhhhhcccCCcccEE
Confidence            456999999999999999999988899999999 999998875       246999999953    3444     38999


Q ss_pred             Eee
Q 034578           86 FMK   88 (90)
Q Consensus        86 ~l~   88 (90)
                      +++
T Consensus       145 ~~n  147 (254)
T 2h00_A          145 MCN  147 (254)
T ss_dssp             EEC
T ss_pred             EEC
Confidence            885

>1kpg_A CFA synthase;, cyclopropane-fatty-acyl-phospholipid synthase 1; mixed alpha beta fold, structural genomics, PSI; HET: SAH 16A; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kp9_A* 1kph_A* 1tpy_A* 1l1e_A*

Probab=99.34  E-value=2.5e-12  Score=84.67  Aligned_cols=78  Identities=12%  Similarity=0.170  Sum_probs=62.5

Q ss_pred             hhHHHHHhhcccCCCCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeeh-HHHHHhCCC-------CCCeeEEEecCCCC
Q 034578            7 ITMKAFVSHYKVDGFNNIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDL-QHVIATAPT-------HEGVSHVGGDMFDA   78 (90)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~-------~~rv~~~~~d~~~~   78 (90)
                      ...+.+++.++   ..+..+|||||||+|.++..++++++ .+++++|+ |.+++.+++       .++++++.+|+.+ 
T Consensus        51 ~~~~~~~~~~~---~~~~~~vLDiGcG~G~~~~~l~~~~~-~~v~gvd~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~-  125 (287)
T 1kpg_A           51 AKIDLALGKLG---LQPGMTLLDVGCGWGATMMRAVEKYD-VNVVGLTLSKNQANHVQQLVANSENLRSKRVLLAGWEQ-  125 (287)
T ss_dssp             HHHHHHHTTTT---CCTTCEEEEETCTTSHHHHHHHHHHC-CEEEEEESCHHHHHHHHHHHHTCCCCSCEEEEESCGGG-
T ss_pred             HHHHHHHHHcC---CCCcCEEEEECCcccHHHHHHHHHcC-CEEEEEECCHHHHHHHHHHHHhcCCCCCeEEEECChhh-
Confidence            34556677666   56678999999999999999997775 49999999 999888765       2589999999965 


Q ss_pred             CCc-ccEEEeec
Q 034578           79 IPN-ADAVFMKV   89 (90)
Q Consensus        79 ~p~-~D~i~l~~   89 (90)
                      +|. +|+|++..
T Consensus       126 ~~~~fD~v~~~~  137 (287)
T 1kpg_A          126 FDEPVDRIVSIG  137 (287)
T ss_dssp             CCCCCSEEEEES
T ss_pred             CCCCeeEEEEeC
Confidence            334 99999864

>3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for STRU genomics; 1.70A {Bacillus thuringiensis}

Probab=99.34  E-value=8.8e-12  Score=79.90  Aligned_cols=66  Identities=20%  Similarity=0.351  Sum_probs=56.7

Q ss_pred             CCCeEEEecCCchHHHHHHHHHCCCCeEEEeeh-HHHHHhCCCC---CCeeEEEecCCC-CCCc--ccEEEeecC
Q 034578           23 NIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDL-QHVIATAPTH---EGVSHVGGDMFD-AIPN--ADAVFMKVA   90 (90)
Q Consensus        23 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~---~rv~~~~~d~~~-~~p~--~D~i~l~~v   90 (90)
                      +..+|||+|||+|.++..++++  ..+++++|+ |.+++.+++.   .+++++.+|+.+ +++.  +|+|++.++
T Consensus        53 ~~~~vLDiG~G~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~  125 (242)
T 3l8d_A           53 KEAEVLDVGCGDGYGTYKLSRT--GYKAVGVDISEVMIQKGKERGEGPDLSFIKGDLSSLPFENEQFEAIMAINS  125 (242)
T ss_dssp             TTCEEEEETCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHTTTCBTTEEEEECBTTBCSSCTTCEEEEEEESC
T ss_pred             CCCeEEEEcCCCCHHHHHHHHc--CCeEEEEECCHHHHHHHHhhcccCCceEEEcchhcCCCCCCCccEEEEcCh
Confidence            4679999999999999999998  568999999 9999988763   789999999987 5543  999998753

>3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian}

Probab=99.34  E-value=2.3e-12  Score=81.66  Aligned_cols=76  Identities=14%  Similarity=0.273  Sum_probs=61.7

Q ss_pred             HHHHhhcccCCCCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeeh-HHHHHhCCCC--CCeeEEEecCCC-CCCc-ccE
Q 034578           10 KAFVSHYKVDGFNNIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDL-QHVIATAPTH--EGVSHVGGDMFD-AIPN-ADA   84 (90)
Q Consensus        10 ~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~--~rv~~~~~d~~~-~~p~-~D~   84 (90)
                      ..+++.+.   ..+..+|||+|||+|.++..++++  ..+++++|+ |.+++.+++.  .+++++.+|+.+ +.+. +|+
T Consensus        35 ~~~l~~~~---~~~~~~vLDiGcG~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~d~~~~~~~~~fD~  109 (220)
T 3hnr_A           35 EDILEDVV---NKSFGNVLEFGVGTGNLTNKLLLA--GRTVYGIEPSREMRMIAKEKLPKEFSITEGDFLSFEVPTSIDT  109 (220)
T ss_dssp             HHHHHHHH---HTCCSEEEEECCTTSHHHHHHHHT--TCEEEEECSCHHHHHHHHHHSCTTCCEESCCSSSCCCCSCCSE
T ss_pred             HHHHHHhh---ccCCCeEEEeCCCCCHHHHHHHhC--CCeEEEEeCCHHHHHHHHHhCCCceEEEeCChhhcCCCCCeEE
Confidence            45556555   345679999999999999999997  679999999 9999888763  489999999988 4444 999


Q ss_pred             EEeecC
Q 034578           85 VFMKVA   90 (90)
Q Consensus        85 i~l~~v   90 (90)
                      |++.++
T Consensus       110 v~~~~~  115 (220)
T 3hnr_A          110 IVSTYA  115 (220)
T ss_dssp             EEEESC
T ss_pred             EEECcc
Confidence            998753

>3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics, midwest cente structural genomics, protein structure initiative; 1.95A {Streptococcus thermophilus} PDB: 3lby_A*

Probab=99.34  E-value=4.3e-12  Score=78.76  Aligned_cols=65  Identities=15%  Similarity=0.182  Sum_probs=53.9

Q ss_pred             CCCCeEEEecCCchHHHHHHHHHCCCCeEEEeeh-HHHHHhCCCC------CCeeEEEecCCC---CCCc-ccEEEee
Q 034578           22 NNIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDL-QHVIATAPTH------EGVSHVGGDMFD---AIPN-ADAVFMK   88 (90)
Q Consensus        22 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~------~rv~~~~~d~~~---~~p~-~D~i~l~   88 (90)
                      .+..+|||+|||+|.++..++++  ..+++++|+ |.+++.|+++      ++++++.+|+..   ..+. +|+|+++
T Consensus        21 ~~~~~vLDiGcG~G~~~~~la~~--~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~~~~~l~~~~~~~fD~v~~~   96 (185)
T 3mti_A           21 DDESIVVDATMGNGNDTAFLAGL--SKKVYAFDVQEQALGKTSQRLSDLGIENTELILDGHENLDHYVREPIRAAIFN   96 (185)
T ss_dssp             CTTCEEEESCCTTSHHHHHHHTT--SSEEEEEESCHHHHHHHHHHHHHHTCCCEEEEESCGGGGGGTCCSCEEEEEEE
T ss_pred             CCCCEEEEEcCCCCHHHHHHHHh--CCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCcHHHHHhhccCCcCEEEEe
Confidence            45689999999999999999998  789999999 9999988762      689999877654   2233 9999875

>3dxy_A TRNA (guanine-N(7)-)-methyltransferase; rossmann fold methyltransferase, tRNA modification, S-adenosyl-L-methionine, TR processing; HET: SAM; 1.50A {Escherichia coli} PDB: 3dxx_A* 3dxz_A*

Probab=99.33  E-value=1.7e-12  Score=83.52  Aligned_cols=66  Identities=15%  Similarity=0.262  Sum_probs=55.7

Q ss_pred             CCCeEEEecCCchHHHHHHHHHCCCCeEEEeeh-HHHHHhCCC------CCCeeEEEecCCCC----CCc--ccEEEee
Q 034578           23 NIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDL-QHVIATAPT------HEGVSHVGGDMFDA----IPN--ADAVFMK   88 (90)
Q Consensus        23 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~------~~rv~~~~~d~~~~----~p~--~D~i~l~   88 (90)
                      ...+|||||||+|.++..+++++|+.+++++|+ +.+++.+++      ..+++++.+|..+.    ++.  +|.|++.
T Consensus        34 ~~~~vLDiGcG~G~~~~~lA~~~p~~~v~giD~s~~~l~~a~~~~~~~~l~nv~~~~~Da~~~l~~~~~~~~~d~v~~~  112 (218)
T 3dxy_A           34 EAPVTLEIGFGMGASLVAMAKDRPEQDFLGIEVHSPGVGACLASAHEEGLSNLRVMCHDAVEVLHKMIPDNSLRMVQLF  112 (218)
T ss_dssp             CCCEEEEESCTTCHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHTTCSSEEEECSCHHHHHHHHSCTTCEEEEEEE
T ss_pred             CCCeEEEEeeeChHHHHHHHHHCCCCeEEEEEecHHHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHcCCCChheEEEe
Confidence            357899999999999999999999999999999 998888764      25799999997652    443  8988875

>2p7i_A Hypothetical protein; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; 1.74A {Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41 PDB: 2p7h_A

Probab=99.33  E-value=1.9e-12  Score=82.81  Aligned_cols=77  Identities=13%  Similarity=0.240  Sum_probs=59.6

Q ss_pred             HHHHhhcccCCCCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeeh-HHHHHhCCCC--CCeeEEEecCCCCCC-c-ccE
Q 034578           10 KAFVSHYKVDGFNNIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDL-QHVIATAPTH--EGVSHVGGDMFDAIP-N-ADA   84 (90)
Q Consensus        10 ~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~--~rv~~~~~d~~~~~p-~-~D~   84 (90)
                      +.+++.+..  ..+..+|||||||+|.++..+++..+  +++++|+ +.+++.+++.  .+++++.+|+.+..+ . +|+
T Consensus        31 ~~~~~~l~~--~~~~~~vLDiGcG~G~~~~~l~~~~~--~v~gvD~s~~~~~~a~~~~~~~v~~~~~d~~~~~~~~~fD~  106 (250)
T 2p7i_A           31 PFMVRAFTP--FFRPGNLLELGSFKGDFTSRLQEHFN--DITCVEASEEAISHAQGRLKDGITYIHSRFEDAQLPRRYDN  106 (250)
T ss_dssp             HHHHHHHGG--GCCSSCEEEESCTTSHHHHHHTTTCS--CEEEEESCHHHHHHHHHHSCSCEEEEESCGGGCCCSSCEEE
T ss_pred             HHHHHHHHh--hcCCCcEEEECCCCCHHHHHHHHhCC--cEEEEeCCHHHHHHHHHhhhCCeEEEEccHHHcCcCCcccE
Confidence            334444432  33567899999999999999999876  6899999 9999888753  289999999977433 3 999


Q ss_pred             EEeecC
Q 034578           85 VFMKVA   90 (90)
Q Consensus        85 i~l~~v   90 (90)
                      |++.++
T Consensus       107 v~~~~~  112 (250)
T 2p7i_A          107 IVLTHV  112 (250)
T ss_dssp             EEEESC
T ss_pred             EEEhhH
Confidence            998764

>1fbn_A MJ fibrillarin homologue; MJ proteins, ribosomal RNA processing, snoRNP, structural genomics, BSGC structure funded by NIH; 1.60A {Methanocaldococcus jannaschii} SCOP: c.66.1.3 PDB: 1g8s_A

Probab=99.33  E-value=1.7e-11  Score=78.83  Aligned_cols=77  Identities=13%  Similarity=0.187  Sum_probs=59.9

Q ss_pred             hHHHH---HhhcccCCCCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeeh-HHHHHhC----CCCCCeeEEEecCCC--
Q 034578            8 TMKAF---VSHYKVDGFNNIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDL-QHVIATA----PTHEGVSHVGGDMFD--   77 (90)
Q Consensus         8 ~~~~~---~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a----~~~~rv~~~~~d~~~--   77 (90)
                      .+..+   ++.++   +.+..+|||+|||+|.++..+++.+|..+++++|+ |.+++.+    +..++++++.+|+.+  
T Consensus        59 ~~~~i~~~l~~~~---~~~~~~VLDlGcG~G~~~~~la~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~v~~~~~d~~~~~  135 (230)
T 1fbn_A           59 LAAAIIKGLKVMP---IKRDSKILYLGASAGTTPSHVADIADKGIVYAIEYAPRIMRELLDACAERENIIPILGDANKPQ  135 (230)
T ss_dssp             HHHHHHTTCCCCC---CCTTCEEEEESCCSSHHHHHHHHHTTTSEEEEEESCHHHHHHHHHHTTTCTTEEEEECCTTCGG
T ss_pred             HHHHHHhcccccC---CCCCCEEEEEcccCCHHHHHHHHHcCCcEEEEEECCHHHHHHHHHHhhcCCCeEEEECCCCCcc
Confidence            34566   44443   45678999999999999999999988889999999 8888654    335789999999976  


Q ss_pred             --C-CCc-ccEEEe
Q 034578           78 --A-IPN-ADAVFM   87 (90)
Q Consensus        78 --~-~p~-~D~i~l   87 (90)
                        . ++. +|+|+.
T Consensus       136 ~~~~~~~~~D~v~~  149 (230)
T 1fbn_A          136 EYANIVEKVDVIYE  149 (230)
T ss_dssp             GGTTTSCCEEEEEE
T ss_pred             cccccCccEEEEEE
Confidence              1 223 899873

>3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD factor, fixation, symbiosis, alpha/beta structure; HET: SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A*

Probab=99.32  E-value=4.5e-12  Score=80.23  Aligned_cols=67  Identities=12%  Similarity=0.188  Sum_probs=56.0

Q ss_pred             CCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeeh-HHHHHhCCC----CCCeeEEEecCCCCCC-c-ccEEEeec
Q 034578           21 FNNIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDL-QHVIATAPT----HEGVSHVGGDMFDAIP-N-ADAVFMKV   89 (90)
Q Consensus        21 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~----~~rv~~~~~d~~~~~p-~-~D~i~l~~   89 (90)
                      ..+..+|||+|||+|.++..+++..  .+++++|+ +.+++.+++    .++++++.+|+.+..+ . +|+|++.+
T Consensus        49 ~~~~~~vLDiGcG~G~~~~~l~~~~--~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~fD~v~~~~  122 (216)
T 3ofk_A           49 SGAVSNGLEIGCAAGAFTEKLAPHC--KRLTVIDVMPRAIGRACQRTKRWSHISWAATDILQFSTAELFDLIVVAE  122 (216)
T ss_dssp             TSSEEEEEEECCTTSHHHHHHGGGE--EEEEEEESCHHHHHHHHHHTTTCSSEEEEECCTTTCCCSCCEEEEEEES
T ss_pred             cCCCCcEEEEcCCCCHHHHHHHHcC--CEEEEEECCHHHHHHHHHhcccCCCeEEEEcchhhCCCCCCccEEEEcc
Confidence            4456799999999999999999985  58999999 999888765    3689999999988333 3 99999875

>3ntv_A MW1564 protein; rossmann fold, putative methyltransferase, transferase; HET: MSE; 1.55A {Staphylococcus aureus}

Probab=99.32  E-value=1.4e-12  Score=84.20  Aligned_cols=67  Identities=16%  Similarity=0.357  Sum_probs=57.8

Q ss_pred             CCCCeEEEecCCchHHHHHHHHHCCCCeEEEeeh-HHHHHhCCC-------CCCeeEEEecCCCCCC----c-ccEEEee
Q 034578           22 NNIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDL-QHVIATAPT-------HEGVSHVGGDMFDAIP----N-ADAVFMK   88 (90)
Q Consensus        22 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~-------~~rv~~~~~d~~~~~p----~-~D~i~l~   88 (90)
                      .+..+|||+|||+|..+..+++..|..+++++|+ |.+++.|++       .++++++.+|+.+.++    . ||+|++.
T Consensus        70 ~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~fD~V~~~  149 (232)
T 3ntv_A           70 NNVKNILEIGTAIGYSSMQFASISDDIHVTTIERNETMIQYAKQNLATYHFENQVRIIEGNALEQFENVNDKVYDMIFID  149 (232)
T ss_dssp             HTCCEEEEECCSSSHHHHHHHTTCTTCEEEEEECCHHHHHHHHHHHHHTTCTTTEEEEESCGGGCHHHHTTSCEEEEEEE
T ss_pred             cCCCEEEEEeCchhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECCHHHHHHhhccCCccEEEEc
Confidence            3568999999999999999999889999999999 999988875       2589999999987433    3 9999875

>1nt2_A Fibrillarin-like PRE-rRNA processing protein; adeMet, binding motif, RNA binding protein; HET: SAM; 2.90A {Archaeoglobus fulgidus} SCOP: c.66.1.3

Probab=99.32  E-value=1.2e-11  Score=79.12  Aligned_cols=80  Identities=8%  Similarity=0.068  Sum_probs=58.7

Q ss_pred             hHHHHHhhcccCCCCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeeh-HHHH----HhCCCCCCeeEEEecCCCC----
Q 034578            8 TMKAFVSHYKVDGFNNIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDL-QHVI----ATAPTHEGVSHVGGDMFDA----   78 (90)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~----~~a~~~~rv~~~~~d~~~~----   78 (90)
                      +...+++.+. ....+..+|||+|||+|.++..+++..+..+++++|+ |.++    +.+++..++.++.+|..++    
T Consensus        43 l~~~~~~~l~-~~~~~g~~VLDlGcGtG~~~~~la~~~~~~~V~gvD~s~~~l~~~~~~a~~~~~v~~~~~d~~~~~~~~  121 (210)
T 1nt2_A           43 LAAMILKGHR-LKLRGDERVLYLGAASGTTVSHLADIVDEGIIYAVEYSAKPFEKLLELVRERNNIIPLLFDASKPWKYS  121 (210)
T ss_dssp             HHHHHHTSCC-CCCCSSCEEEEETCTTSHHHHHHHHHTTTSEEEEECCCHHHHHHHHHHHHHCSSEEEECSCTTCGGGTT
T ss_pred             HHHHHHhhcc-cCCCCCCEEEEECCcCCHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHhcCCCeEEEEcCCCCchhhc
Confidence            3444444432 0145667999999999999999999988789999999 8754    4444456789999988762    


Q ss_pred             -CCc-ccEEEee
Q 034578           79 -IPN-ADAVFMK   88 (90)
Q Consensus        79 -~p~-~D~i~l~   88 (90)
                       +++ +|+|++.
T Consensus       122 ~~~~~fD~V~~~  133 (210)
T 1nt2_A          122 GIVEKVDLIYQD  133 (210)
T ss_dssp             TTCCCEEEEEEC
T ss_pred             ccccceeEEEEe
Confidence             233 8999864

>3bkx_A SAM-dependent methyltransferase; YP_807781.1, cyclopropane-fatty-acyl-phospholipid synthase-L protein, methyltransferase domain; 1.85A {Lactobacillus casei}

Probab=99.32  E-value=1.6e-12  Score=85.01  Aligned_cols=81  Identities=15%  Similarity=0.207  Sum_probs=62.9

Q ss_pred             hhhHHHHHhhcccCCCCCCCeEEEecCCchHHHHHHHHHC-CCCeEEEeeh-HH------HHHhCCCC-------CCeeE
Q 034578            6 KITMKAFVSHYKVDGFNNIRSMVDVGGGTGTVLAEIVKSY-PHIKGINFDL-QH------VIATAPTH-------EGVSH   70 (90)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~-p~~~~~~~D~-p~------~~~~a~~~-------~rv~~   70 (90)
                      ......+++.++   ..+..+|||||||+|.++..+++++ |+.+++++|+ +.      +++.++++       +++++
T Consensus        29 ~~~~~~l~~~~~---~~~~~~vLDiGcG~G~~~~~l~~~~g~~~~v~gvD~s~~~~~~~~~~~~a~~~~~~~~~~~~v~~  105 (275)
T 3bkx_A           29 TAHRLAIAEAWQ---VKPGEKILEIGCGQGDLSAVLADQVGSSGHVTGIDIASPDYGAPLTLGQAWNHLLAGPLGDRLTV  105 (275)
T ss_dssp             HHHHHHHHHHHT---CCTTCEEEEESCTTSHHHHHHHHHHCTTCEEEEECSSCTTCCSSSCHHHHHHHHHTSTTGGGEEE
T ss_pred             HHHHHHHHHHcC---CCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEECCccccccHHHHHHHHHHHHhcCCCCceEE
Confidence            344566677766   5667899999999999999999996 8899999999 65      77776541       58999


Q ss_pred             EEec-CCC---CCC-c-ccEEEeec
Q 034578           71 VGGD-MFD---AIP-N-ADAVFMKV   89 (90)
Q Consensus        71 ~~~d-~~~---~~p-~-~D~i~l~~   89 (90)
                      ..+| +..   +++ . +|+|++..
T Consensus       106 ~~~d~~~~~~~~~~~~~fD~v~~~~  130 (275)
T 3bkx_A          106 HFNTNLSDDLGPIADQHFDRVVLAH  130 (275)
T ss_dssp             ECSCCTTTCCGGGTTCCCSEEEEES
T ss_pred             EECChhhhccCCCCCCCEEEEEEcc
Confidence            9998 543   233 2 99999865

>3mq2_A 16S rRNA methyltransferase; methyltranferase, ribosomal, antibiotic resistance, aminoglycoside, S-adenosyl-L-methionine; HET: SAH; 1.69A {Streptomyces SP}

Probab=99.31  E-value=1.1e-11  Score=78.76  Aligned_cols=73  Identities=12%  Similarity=0.112  Sum_probs=55.8

Q ss_pred             HHHhhcccCCCCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeeh-HHHHHh----CCC------CCCeeEEEecCCC-C
Q 034578           11 AFVSHYKVDGFNNIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDL-QHVIAT----APT------HEGVSHVGGDMFD-A   78 (90)
Q Consensus        11 ~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~----a~~------~~rv~~~~~d~~~-~   78 (90)
                      ..++.+.   ..+..+|||+|||+|.++..+++++|..+++++|+ +.+++.    +++      .++++++.+|+.+ +
T Consensus        18 ~~~~~l~---~~~~~~vLDiGcG~G~~~~~la~~~p~~~v~gvD~s~~~l~~~~~~a~~~~~~~~~~~v~~~~~d~~~l~   94 (218)
T 3mq2_A           18 AEFEQLR---SQYDDVVLDVGTGDGKHPYKVARQNPSRLVVALDADKSRMEKISAKAAAKPAKGGLPNLLYLWATAERLP   94 (218)
T ss_dssp             HHHHHHH---TTSSEEEEEESCTTCHHHHHHHHHCTTEEEEEEESCGGGGHHHHHHHTSCGGGTCCTTEEEEECCSTTCC
T ss_pred             HHHHHhh---ccCCCEEEEecCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhhhhcCCCceEEEecchhhCC
Confidence            3444454   45678999999999999999999999999999999 886654    332      2589999999987 4


Q ss_pred             CCc-ccEEE
Q 034578           79 IPN-ADAVF   86 (90)
Q Consensus        79 ~p~-~D~i~   86 (90)
                      ++. .|.+.
T Consensus        95 ~~~~~d~v~  103 (218)
T 3mq2_A           95 PLSGVGELH  103 (218)
T ss_dssp             SCCCEEEEE
T ss_pred             CCCCCCEEE
Confidence            432 25554

>1yb2_A Hypothetical protein TA0852; structural genomics, methyltransferase, thermoplasma acidoph midwest center for structural genomics, MCSG; 2.01A {Thermoplasma acidophilum} SCOP: c.66.1.13

Probab=99.31  E-value=4.1e-12  Score=83.79  Aligned_cols=74  Identities=18%  Similarity=0.178  Sum_probs=59.0

Q ss_pred             HHHhhcccCCCCCCCeEEEecCCchHHHHHHHHH-CCCCeEEEeeh-HHHHHhCCC----C---CCeeEEEecCCCCCCc
Q 034578           11 AFVSHYKVDGFNNIRSMVDVGGGTGTVLAEIVKS-YPHIKGINFDL-QHVIATAPT----H---EGVSHVGGDMFDAIPN   81 (90)
Q Consensus        11 ~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~-~p~~~~~~~D~-p~~~~~a~~----~---~rv~~~~~d~~~~~p~   81 (90)
                      .+++.++   +.+..+|||+|||+|.++..+++. .|..+++++|+ |.+++.+++    .   ++++++.+|+.++++.
T Consensus       101 ~~~~~~~---~~~~~~VLD~G~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~g~~~v~~~~~d~~~~~~~  177 (275)
T 1yb2_A          101 YIIMRCG---LRPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYDIGNVRTSRSDIADFISD  177 (275)
T ss_dssp             -----CC---CCTTCEEEEECCTTSHHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHHHTTSCCTTEEEECSCTTTCCCS
T ss_pred             HHHHHcC---CCCcCEEEEecCCCCHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhcCCCCcEEEEECchhccCcC
Confidence            4445555   556789999999999999999998 78999999999 999887764    2   5799999999886653


Q ss_pred             --ccEEEe
Q 034578           82 --ADAVFM   87 (90)
Q Consensus        82 --~D~i~l   87 (90)
                        +|+|++
T Consensus       178 ~~fD~Vi~  185 (275)
T 1yb2_A          178 QMYDAVIA  185 (275)
T ss_dssp             CCEEEEEE
T ss_pred             CCccEEEE
Confidence              999987

>3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.46A {Archaeoglobus fulgidus}

Probab=99.31  E-value=4.8e-12  Score=81.55  Aligned_cols=78  Identities=21%  Similarity=0.373  Sum_probs=61.5

Q ss_pred             hhHHHHHhhcccCCCCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeeh-HHHHHhCCCCCCeeEEEecCCC---CCCc-
Q 034578            7 ITMKAFVSHYKVDGFNNIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDL-QHVIATAPTHEGVSHVGGDMFD---AIPN-   81 (90)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~~rv~~~~~d~~~---~~p~-   81 (90)
                      .+.+.+...++.  +.+..+|||||||+|.++..+++.  +.+++++|+ +.+++.+++.  ++++.+|+.+   +++. 
T Consensus        27 ~~~~~~~~~l~~--~~~~~~vLDiGcG~G~~~~~l~~~--~~~v~gvD~s~~~~~~a~~~--~~~~~~d~~~~~~~~~~~  100 (240)
T 3dli_A           27 LVKARLRRYIPY--FKGCRRVLDIGCGRGEFLELCKEE--GIESIGVDINEDMIKFCEGK--FNVVKSDAIEYLKSLPDK  100 (240)
T ss_dssp             HHHHHHGGGGGG--TTTCSCEEEETCTTTHHHHHHHHH--TCCEEEECSCHHHHHHHHTT--SEEECSCHHHHHHTSCTT
T ss_pred             HHHHHHHHHHhh--hcCCCeEEEEeCCCCHHHHHHHhC--CCcEEEEECCHHHHHHHHhh--cceeeccHHHHhhhcCCC
Confidence            344555555553  556689999999999999999998  557899999 9999988866  8899998876   4443 


Q ss_pred             -ccEEEeecC
Q 034578           82 -ADAVFMKVA   90 (90)
Q Consensus        82 -~D~i~l~~v   90 (90)
                       +|+|++.++
T Consensus       101 ~fD~i~~~~~  110 (240)
T 3dli_A          101 YLDGVMISHF  110 (240)
T ss_dssp             CBSEEEEESC
T ss_pred             CeeEEEECCc
Confidence             999998753

>2fk8_A Methoxy mycolic acid synthase 4; S-adenosylmethionine-dependent methyltransferase fold, trans; HET: SAM; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 2fk7_A* 3ha3_A* 3ha5_A* 3ha7_A*

Probab=99.31  E-value=3.1e-12  Score=85.50  Aligned_cols=79  Identities=14%  Similarity=0.188  Sum_probs=63.5

Q ss_pred             hhhHHHHHhhcccCCCCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeeh-HHHHHhCCCC-------CCeeEEEecCCC
Q 034578            6 KITMKAFVSHYKVDGFNNIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDL-QHVIATAPTH-------EGVSHVGGDMFD   77 (90)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~-------~rv~~~~~d~~~   77 (90)
                      ....+.+++.++   ..+..+|||+|||+|.++..+++++ +.+++++|+ |.+++.+++.       ++++++.+|+.+
T Consensus        76 ~~~~~~~~~~~~---~~~~~~vLDiGcG~G~~~~~la~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~  151 (318)
T 2fk8_A           76 YAKVDLNLDKLD---LKPGMTLLDIGCGWGTTMRRAVERF-DVNVIGLTLSKNQHARCEQVLASIDTNRSRQVLLQGWED  151 (318)
T ss_dssp             HHHHHHHHTTSC---CCTTCEEEEESCTTSHHHHHHHHHH-CCEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCGGG
T ss_pred             HHHHHHHHHhcC---CCCcCEEEEEcccchHHHHHHHHHC-CCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECChHH
Confidence            344566677666   5567899999999999999999987 569999999 9998887652       579999999865


Q ss_pred             CCCc-ccEEEeec
Q 034578           78 AIPN-ADAVFMKV   89 (90)
Q Consensus        78 ~~p~-~D~i~l~~   89 (90)
                       +|. +|+|++..
T Consensus       152 -~~~~fD~v~~~~  163 (318)
T 2fk8_A          152 -FAEPVDRIVSIE  163 (318)
T ss_dssp             -CCCCCSEEEEES
T ss_pred             -CCCCcCEEEEeC
Confidence             344 99999864

>3fzg_A 16S rRNA methylase; methyltransferase, plasmid, transferase; HET: SAM; 2.00A {Escherichia coli}

Probab=99.31  E-value=2.9e-12  Score=81.91  Aligned_cols=67  Identities=16%  Similarity=0.128  Sum_probs=55.1

Q ss_pred             CCCCeEEEecCCchHHHHHHHHHCCCCeEEEeeh-HHHHHhCCCC-------CCeeEEEecCCC-CCCc-ccEEEeecC
Q 034578           22 NNIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDL-QHVIATAPTH-------EGVSHVGGDMFD-AIPN-ADAVFMKVA   90 (90)
Q Consensus        22 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~-------~rv~~~~~d~~~-~~p~-~D~i~l~~v   90 (90)
                      ..+.+|||+|||+|.++..++...|+++++++|+ +.|++.++++       .++++  .|..+ ..+. ||+|++.++
T Consensus        48 ~~~~~VLDlGCG~GplAl~l~~~~p~a~~~A~Di~~~~leiar~~~~~~g~~~~v~~--~d~~~~~~~~~~DvVLa~k~  124 (200)
T 3fzg_A           48 KHVSSILDFGCGFNPLALYQWNENEKIIYHAYDIDRAEIAFLSSIIGKLKTTIKYRF--LNKESDVYKGTYDVVFLLKM  124 (200)
T ss_dssp             CCCSEEEEETCTTHHHHHHHHCSSCCCEEEEECSCHHHHHHHHHHHHHSCCSSEEEE--ECCHHHHTTSEEEEEEEETC
T ss_pred             CCCCeEEEecCCCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcCCCccEEE--ecccccCCCCCcChhhHhhH
Confidence            3578999999999999999999999999999999 9999988762       24555  77765 3444 999998653

>4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A

Probab=99.31  E-value=5.3e-12  Score=86.90  Aligned_cols=68  Identities=24%  Similarity=0.314  Sum_probs=58.5

Q ss_pred             CCCeEEEecCCchHHHHHHHHHC-CCCeEEEeeh-HHHHHhCCCC--------------CCeeEEEecCCC-------CC
Q 034578           23 NIRSMVDVGGGTGTVLAEIVKSY-PHIKGINFDL-QHVIATAPTH--------------EGVSHVGGDMFD-------AI   79 (90)
Q Consensus        23 ~~~~vlDvG~G~G~~~~~l~~~~-p~~~~~~~D~-p~~~~~a~~~--------------~rv~~~~~d~~~-------~~   79 (90)
                      +..+|||+|||+|.++..+++.+ |..+++++|+ |.+++.++++              ++++++.+|+.+       ++
T Consensus        83 ~~~~VLDlGcG~G~~~~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~g~~~~~~v~~~~~d~~~l~~~~~~~~  162 (383)
T 4fsd_A           83 EGATVLDLGCGTGRDVYLASKLVGEHGKVIGVDMLDNQLEVARKYVEYHAEKFFGSPSRSNVRFLKGFIENLATAEPEGV  162 (383)
T ss_dssp             TTCEEEEESCTTSHHHHHHHHHHTTTCEEEEEECCHHHHHHHHHTHHHHHHHHHSSTTCCCEEEEESCTTCGGGCBSCCC
T ss_pred             CCCEEEEecCccCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhhhhcccccCCCceEEEEccHHHhhhcccCCC
Confidence            45799999999999999999987 8899999999 9999988753              689999999987       44


Q ss_pred             Cc--ccEEEeecC
Q 034578           80 PN--ADAVFMKVA   90 (90)
Q Consensus        80 p~--~D~i~l~~v   90 (90)
                      +.  +|+|+++.+
T Consensus       163 ~~~~fD~V~~~~~  175 (383)
T 4fsd_A          163 PDSSVDIVISNCV  175 (383)
T ss_dssp             CTTCEEEEEEESC
T ss_pred             CCCCEEEEEEccc
Confidence            43  999998753

>3g89_A Ribosomal RNA small subunit methyltransferase G; 16S rRNA methyltransferase, translation, cytoplasm, rRNA processing; HET: HIC SAM AMP; 1.50A {Thermus thermophilus} PDB: 3g88_A* 3g8a_A* 3g8b_A*

Probab=99.30  E-value=2.6e-12  Score=84.21  Aligned_cols=68  Identities=15%  Similarity=0.134  Sum_probs=57.7

Q ss_pred             CCCCeEEEecCCchHHHHHHHHHCCCCeEEEeeh-HHHHHhCCCC------CCeeEEEecCCC-CC-----CcccEEEee
Q 034578           22 NNIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDL-QHVIATAPTH------EGVSHVGGDMFD-AI-----PNADAVFMK   88 (90)
Q Consensus        22 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~------~rv~~~~~d~~~-~~-----p~~D~i~l~   88 (90)
                      .+..+|||||||+|.++..++..+|+.+++++|+ +.+++.++++      .+++++.+|+.+ +.     ..||+|+.+
T Consensus        79 ~~~~~vLDiG~G~G~~~i~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~l~~v~~~~~d~~~~~~~~~~~~~fD~I~s~  158 (249)
T 3g89_A           79 QGPLRVLDLGTGAGFPGLPLKIVRPELELVLVDATRKKVAFVERAIEVLGLKGARALWGRAEVLAREAGHREAYARAVAR  158 (249)
T ss_dssp             CSSCEEEEETCTTTTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHTCSSEEEEECCHHHHTTSTTTTTCEEEEEEE
T ss_pred             CCCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCCceEEEECcHHHhhcccccCCCceEEEEC
Confidence            3567999999999999999999999999999999 9999888752      469999999876 32     239999986


Q ss_pred             c
Q 034578           89 V   89 (90)
Q Consensus        89 ~   89 (90)
                      .
T Consensus       159 a  159 (249)
T 3g89_A          159 A  159 (249)
T ss_dssp             S
T ss_pred             C
Confidence            4

>3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint center for structural genomics, JCSG; HET: SAH; 2.11A {Anabaena variabilis atcc 29413}

Probab=99.30  E-value=6e-12  Score=81.09  Aligned_cols=68  Identities=19%  Similarity=0.299  Sum_probs=56.1

Q ss_pred             CCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeeh-HHHHHhCCC---CCCeeEEEecCCC-CCCc-------ccEEEee
Q 034578           21 FNNIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDL-QHVIATAPT---HEGVSHVGGDMFD-AIPN-------ADAVFMK   88 (90)
Q Consensus        21 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~---~~rv~~~~~d~~~-~~p~-------~D~i~l~   88 (90)
                      ..+..+|||+|||+|.++..+++..+  +++++|+ |.+++.+++   ..+++++.+|+.+ +.+.       +|+|+++
T Consensus        54 ~~~~~~vLD~GcG~G~~~~~la~~~~--~v~gvD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~d~v~~~  131 (245)
T 3ggd_A           54 FNPELPLIDFACGNGTQTKFLSQFFP--RVIGLDVSKSALEIAAKENTAANISYRLLDGLVPEQAAQIHSEIGDANIYMR  131 (245)
T ss_dssp             SCTTSCEEEETCTTSHHHHHHHHHSS--CEEEEESCHHHHHHHHHHSCCTTEEEEECCTTCHHHHHHHHHHHCSCEEEEE
T ss_pred             cCCCCeEEEEcCCCCHHHHHHHHhCC--CEEEEECCHHHHHHHHHhCcccCceEEECcccccccccccccccCccEEEEc
Confidence            44567899999999999999999987  7999999 999988865   3589999999988 3221       7899887


Q ss_pred             cC
Q 034578           89 VA   90 (90)
Q Consensus        89 ~v   90 (90)
                      .+
T Consensus       132 ~~  133 (245)
T 3ggd_A          132 TG  133 (245)
T ss_dssp             SS
T ss_pred             ch
Confidence            53

>1zq9_A Probable dimethyladenosine transferase; SGC, structural genomics, structural genomics consortium; HET: SAM; 1.90A {Homo sapiens} SCOP: c.66.1.24

Probab=99.30  E-value=5.4e-12  Score=84.09  Aligned_cols=78  Identities=15%  Similarity=0.342  Sum_probs=64.6

Q ss_pred             hhhHHHHHhhcccCCCCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeeh-HHHHHhCCCC-------CCeeEEEecCCC
Q 034578            6 KITMKAFVSHYKVDGFNNIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDL-QHVIATAPTH-------EGVSHVGGDMFD   77 (90)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~-------~rv~~~~~d~~~   77 (90)
                      ..+++.+++.++   ..+..+|||+|||+|.++..++++.  .+++++|+ +.+++.++++       ++++++.+|+.+
T Consensus        14 ~~i~~~i~~~~~---~~~~~~VLDiG~G~G~lt~~L~~~~--~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~D~~~   88 (285)
T 1zq9_A           14 PLIINSIIDKAA---LRPTDVVLEVGPGTGNMTVKLLEKA--KKVVACELDPRLVAELHKRVQGTPVASKLQVLVGDVLK   88 (285)
T ss_dssp             HHHHHHHHHHTC---CCTTCEEEEECCTTSTTHHHHHHHS--SEEEEEESCHHHHHHHHHHHTTSTTGGGEEEEESCTTT
T ss_pred             HHHHHHHHHhcC---CCCCCEEEEEcCcccHHHHHHHhhC--CEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcceec
Confidence            446777888777   5667899999999999999999984  58999999 9998877641       579999999988


Q ss_pred             -CCCcccEEEee
Q 034578           78 -AIPNADAVFMK   88 (90)
Q Consensus        78 -~~p~~D~i~l~   88 (90)
                       +++.+|+|+.+
T Consensus        89 ~~~~~fD~vv~n  100 (285)
T 1zq9_A           89 TDLPFFDTCVAN  100 (285)
T ss_dssp             SCCCCCSEEEEE
T ss_pred             ccchhhcEEEEe
Confidence             67779998874

>3lbf_A Protein-L-isoaspartate O-methyltransferase; modified rossman-type fold, S-adenosyl-L- methionine; HET: SAH; 1.80A {Escherichia coli}

Probab=99.30  E-value=9.7e-12  Score=78.50  Aligned_cols=79  Identities=14%  Similarity=0.162  Sum_probs=63.9

Q ss_pred             hhhHHHHHhhcccCCCCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeeh-HHHHHhCCC------CCCeeEEEecCCCC
Q 034578            6 KITMKAFVSHYKVDGFNNIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDL-QHVIATAPT------HEGVSHVGGDMFDA   78 (90)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~------~~rv~~~~~d~~~~   78 (90)
                      ......+++.+.   ..+..+|||+|||+|.++..+++.  ..+++++|+ |.+++.+++      ..+++++.+|+.+.
T Consensus        63 ~~~~~~~~~~l~---~~~~~~vLdiG~G~G~~~~~la~~--~~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~  137 (210)
T 3lbf_A           63 PYMVARMTELLE---LTPQSRVLEIGTGSGYQTAILAHL--VQHVCSVERIKGLQWQARRRLKNLDLHNVSTRHGDGWQG  137 (210)
T ss_dssp             HHHHHHHHHHTT---CCTTCEEEEECCTTSHHHHHHHHH--SSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGC
T ss_pred             HHHHHHHHHhcC---CCCCCEEEEEcCCCCHHHHHHHHh--CCEEEEEecCHHHHHHHHHHHHHcCCCceEEEECCcccC
Confidence            344566677666   567789999999999999999998  688999999 999988875      25799999999874


Q ss_pred             CC---cccEEEeec
Q 034578           79 IP---NADAVFMKV   89 (90)
Q Consensus        79 ~p---~~D~i~l~~   89 (90)
                      .+   .||+|++..
T Consensus       138 ~~~~~~~D~i~~~~  151 (210)
T 3lbf_A          138 WQARAPFDAIIVTA  151 (210)
T ss_dssp             CGGGCCEEEEEESS
T ss_pred             CccCCCccEEEEcc
Confidence            32   399999853

>2pwy_A TRNA (adenine-N(1)-)-methyltransferase; mtase, adoMet, TRMI, tRNA-M1A58; HET: SAH; 1.70A {Thermus thermophilus}

Probab=99.30  E-value=1.1e-11  Score=80.25  Aligned_cols=77  Identities=18%  Similarity=0.236  Sum_probs=63.9

Q ss_pred             HHHHHhhcccCCCCCCCeEEEecCCchHHHHHHHHH-CCCCeEEEeeh-HHHHHhCCCC-------CCeeEEEecCCCC-
Q 034578            9 MKAFVSHYKVDGFNNIRSMVDVGGGTGTVLAEIVKS-YPHIKGINFDL-QHVIATAPTH-------EGVSHVGGDMFDA-   78 (90)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~-~p~~~~~~~D~-p~~~~~a~~~-------~rv~~~~~d~~~~-   78 (90)
                      +..+++.++   ..+..+|||+|||+|.++..+++. .|..+++++|+ |.+++.++++       +++++..+|+.+. 
T Consensus        85 ~~~~~~~~~---~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~g~~~v~~~~~d~~~~~  161 (258)
T 2pwy_A           85 ASAMVTLLD---LAPGMRVLEAGTGSGGLTLFLARAVGEKGLVESYEARPHHLAQAERNVRAFWQVENVRFHLGKLEEAE  161 (258)
T ss_dssp             HHHHHHHTT---CCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCCCCCEEEEESCGGGCC
T ss_pred             HHHHHHHcC---CCCCCEEEEECCCcCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcCCCCEEEEECchhhcC
Confidence            345666666   566789999999999999999999 78899999999 9998887652       6899999999874 


Q ss_pred             CCc--ccEEEee
Q 034578           79 IPN--ADAVFMK   88 (90)
Q Consensus        79 ~p~--~D~i~l~   88 (90)
                      ++.  +|+|++.
T Consensus       162 ~~~~~~D~v~~~  173 (258)
T 2pwy_A          162 LEEAAYDGVALD  173 (258)
T ss_dssp             CCTTCEEEEEEE
T ss_pred             CCCCCcCEEEEC
Confidence            653  9999874

>2xvm_A Tellurite resistance protein TEHB; antibiotic resistance, transferase; HET: SAH; 1.48A {Escherichia coli} PDB: 2xva_A* 4dq0_A* 2i6g_A*

Probab=99.30  E-value=1.2e-11  Score=77.03  Aligned_cols=75  Identities=15%  Similarity=0.133  Sum_probs=60.2

Q ss_pred             HHHHhhcccCCCCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeeh-HHHHHhCCCC------CCeeEEEecCCC-CCCc
Q 034578           10 KAFVSHYKVDGFNNIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDL-QHVIATAPTH------EGVSHVGGDMFD-AIPN   81 (90)
Q Consensus        10 ~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~------~rv~~~~~d~~~-~~p~   81 (90)
                      +.+++.++   ..+..+|||+|||+|.++..+++.  ..+++++|+ |.+++.+++.      ++++++.+|+.+ +.+.
T Consensus        22 ~~l~~~~~---~~~~~~vLdiG~G~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~   96 (199)
T 2xvm_A           22 SEVLEAVK---VVKPGKTLDLGCGNGRNSLYLAAN--GYDVDAWDKNAMSIANVERIKSIENLDNLHTRVVDLNNLTFDR   96 (199)
T ss_dssp             HHHHHHTT---TSCSCEEEEETCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHHTCTTEEEEECCGGGCCCCC
T ss_pred             HHHHHHhh---ccCCCeEEEEcCCCCHHHHHHHHC--CCeEEEEECCHHHHHHHHHHHHhCCCCCcEEEEcchhhCCCCC
Confidence            34555565   445679999999999999999987  579999999 9999887652      479999999987 4444


Q ss_pred             -ccEEEeec
Q 034578           82 -ADAVFMKV   89 (90)
Q Consensus        82 -~D~i~l~~   89 (90)
                       +|+|++..
T Consensus        97 ~~D~v~~~~  105 (199)
T 2xvm_A           97 QYDFILSTV  105 (199)
T ss_dssp             CEEEEEEES
T ss_pred             CceEEEEcc
Confidence             99999875

>2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM, structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus thermophilus} PDB: 2yr0_A

Probab=99.30  E-value=5.4e-12  Score=81.69  Aligned_cols=67  Identities=16%  Similarity=0.263  Sum_probs=56.3

Q ss_pred             CCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeeh-HHHHHhCCC-----CCCeeEEEecCCC-CCCc--ccEEEeec
Q 034578           21 FNNIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDL-QHVIATAPT-----HEGVSHVGGDMFD-AIPN--ADAVFMKV   89 (90)
Q Consensus        21 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~-----~~rv~~~~~d~~~-~~p~--~D~i~l~~   89 (90)
                      ..+..+|||+|||+|.++..++++  ..+++++|+ +.+++.+++     .++++++.+|+.+ +++.  +|+|++.+
T Consensus        37 ~~~~~~vLDiG~G~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~  112 (263)
T 2yqz_A           37 KGEEPVFLELGVGTGRIALPLIAR--GYRYIALDADAAMLEVFRQKIAGVDRKVQVVQADARAIPLPDESVHGVIVVH  112 (263)
T ss_dssp             SSSCCEEEEETCTTSTTHHHHHTT--TCEEEEEESCHHHHHHHHHHTTTSCTTEEEEESCTTSCCSCTTCEEEEEEES
T ss_pred             CCCCCEEEEeCCcCCHHHHHHHHC--CCEEEEEECCHHHHHHHHHHhhccCCceEEEEcccccCCCCCCCeeEEEECC
Confidence            456789999999999999999987  578999999 999888764     3689999999977 4443  99999875

>3b3j_A Histone-arginine methyltransferase CARM1; protein arginine methyltransferase 4, APO catalytic domain, regulator, mRNA processing; 2.55A {Rattus norvegicus}

Probab=99.30  E-value=1.1e-11  Score=87.98  Aligned_cols=79  Identities=14%  Similarity=0.179  Sum_probs=62.6

Q ss_pred             hhHHHHHhhcccCCCCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeehHHHHHhCCC-------CCCeeEEEecCCC-C
Q 034578            7 ITMKAFVSHYKVDGFNNIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDLQHVIATAPT-------HEGVSHVGGDMFD-A   78 (90)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~p~~~~~a~~-------~~rv~~~~~d~~~-~   78 (90)
                      ...+.+++.+.   ..+..+|||||||+|.++..+++ .+..+++++|+.++++.|++       .++++++.+|+.+ +
T Consensus       145 ~~~~~il~~l~---~~~~~~VLDiGcGtG~la~~la~-~~~~~V~gvD~s~~l~~A~~~~~~~gl~~~v~~~~~d~~~~~  220 (480)
T 3b3j_A          145 TYQRAILQNHT---DFKDKIVLDVGCGSGILSFFAAQ-AGARKIYAVEASTMAQHAEVLVKSNNLTDRIVVIPGKVEEVS  220 (480)
T ss_dssp             HHHHHHHHTGG---GTTTCEEEEESCSTTHHHHHHHH-TTCSEEEEEECHHHHHHHHHHHHHTTCTTTEEEEESCTTTCC
T ss_pred             HHHHHHHHhhh---hcCCCEEEEecCcccHHHHHHHH-cCCCEEEEEEcHHHHHHHHHHHHHcCCCCcEEEEECchhhCc
Confidence            34566777666   44567999999999999998887 57789999999338777764       2689999999988 6


Q ss_pred             CCc-ccEEEeec
Q 034578           79 IPN-ADAVFMKV   89 (90)
Q Consensus        79 ~p~-~D~i~l~~   89 (90)
                      +|+ +|+|+...
T Consensus       221 ~~~~fD~Ivs~~  232 (480)
T 3b3j_A          221 LPEQVDIIISEP  232 (480)
T ss_dssp             CSSCEEEEECCC
T ss_pred             cCCCeEEEEEeC
Confidence            665 99999753

>2yxe_A Protein-L-isoaspartate O-methyltransferase; rossman-type fold, alpha/beta/alpha sandwich structure, STRU genomics, NPPSFA; 2.00A {Methanocaldococcus jannaschii}

Probab=99.30  E-value=5.6e-12  Score=79.86  Aligned_cols=80  Identities=11%  Similarity=0.103  Sum_probs=64.5

Q ss_pred             hhHHHHHhhcccCCCCCCCeEEEecCCchHHHHHHHHHC-CCCeEEEeeh-HHHHHhCCCC------CCeeEEEecCCCC
Q 034578            7 ITMKAFVSHYKVDGFNNIRSMVDVGGGTGTVLAEIVKSY-PHIKGINFDL-QHVIATAPTH------EGVSHVGGDMFDA   78 (90)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~-p~~~~~~~D~-p~~~~~a~~~------~rv~~~~~d~~~~   78 (90)
                      .....+++.+.   ..+..+|||+|||+|.++..+++.. |..+++++|+ |.+++.++++      +++++..+|+.+.
T Consensus        64 ~~~~~~~~~~~---~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~  140 (215)
T 2yxe_A           64 HMVGMMCELLD---LKPGMKVLEIGTGCGYHAAVTAEIVGEDGLVVSIERIPELAEKAERTLRKLGYDNVIVIVGDGTLG  140 (215)
T ss_dssp             HHHHHHHHHTT---CCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHTCTTEEEEESCGGGC
T ss_pred             HHHHHHHHhhC---CCCCCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEECCcccC
Confidence            34456666665   5567899999999999999999997 7789999999 9999888752      5799999998765


Q ss_pred             CC---cccEEEeec
Q 034578           79 IP---NADAVFMKV   89 (90)
Q Consensus        79 ~p---~~D~i~l~~   89 (90)
                      ++   .+|+|++..
T Consensus       141 ~~~~~~fD~v~~~~  154 (215)
T 2yxe_A          141 YEPLAPYDRIYTTA  154 (215)
T ss_dssp             CGGGCCEEEEEESS
T ss_pred             CCCCCCeeEEEECC
Confidence            54   399999764

>3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding, DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A {Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A*

Probab=99.30  E-value=7.5e-12  Score=81.50  Aligned_cols=65  Identities=26%  Similarity=0.313  Sum_probs=55.7

Q ss_pred             CCCeEEEecCCchHHHHHHHHHCCCCeEEEeeh-HHHHHhCCC-CCCeeEEEecCCC-CCCc-ccEEEeec
Q 034578           23 NIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDL-QHVIATAPT-HEGVSHVGGDMFD-AIPN-ADAVFMKV   89 (90)
Q Consensus        23 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~-~~rv~~~~~d~~~-~~p~-~D~i~l~~   89 (90)
                      +..+|||+|||+|.++..++++.  .+++++|+ |.+++.+++ ..+++++.+|+.+ +.+. +|+|++..
T Consensus        50 ~~~~vLDiGcG~G~~~~~l~~~~--~~v~gvD~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~fD~v~~~~  118 (263)
T 3pfg_A           50 KAASLLDVACGTGMHLRHLADSF--GTVEGLELSADMLAIARRRNPDAVLHHGDMRDFSLGRRFSAVTCMF  118 (263)
T ss_dssp             TCCEEEEETCTTSHHHHHHTTTS--SEEEEEESCHHHHHHHHHHCTTSEEEECCTTTCCCSCCEEEEEECT
T ss_pred             CCCcEEEeCCcCCHHHHHHHHcC--CeEEEEECCHHHHHHHHhhCCCCEEEECChHHCCccCCcCEEEEcC
Confidence            45899999999999999999985  47999999 999998876 4689999999988 4444 99999864

>3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide antibiotics biosynthesis, structural genomics; 2.00A {Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A*

Probab=99.29  E-value=3.4e-12  Score=84.75  Aligned_cols=76  Identities=16%  Similarity=0.235  Sum_probs=60.7

Q ss_pred             hhHHHHHhhcccCCCCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeeh-HHHHHhCCCC---------CCeeEEEecCC
Q 034578            7 ITMKAFVSHYKVDGFNNIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDL-QHVIATAPTH---------EGVSHVGGDMF   76 (90)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~---------~rv~~~~~d~~   76 (90)
                      .....+++.++   . ...+|||||||+|.++..++++  ..+++++|+ |.+++.++++         .+++++.+|+.
T Consensus        70 ~~~~~~~~~~~---~-~~~~vLDlGcG~G~~~~~l~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~  143 (299)
T 3g2m_A           70 SEAREFATRTG---P-VSGPVLELAAGMGRLTFPFLDL--GWEVTALELSTSVLAAFRKRLAEAPADVRDRCTLVQGDMS  143 (299)
T ss_dssp             HHHHHHHHHHC---C-CCSCEEEETCTTTTTHHHHHTT--TCCEEEEESCHHHHHHHHHHHHTSCHHHHTTEEEEECBTT
T ss_pred             HHHHHHHHhhC---C-CCCcEEEEeccCCHHHHHHHHc--CCeEEEEECCHHHHHHHHHHHhhcccccccceEEEeCchh
Confidence            34556666665   2 3459999999999999999998  578999999 9999988752         67999999998


Q ss_pred             C-CCCc-ccEEEee
Q 034578           77 D-AIPN-ADAVFMK   88 (90)
Q Consensus        77 ~-~~p~-~D~i~l~   88 (90)
                      + +++. +|+|++.
T Consensus       144 ~~~~~~~fD~v~~~  157 (299)
T 3g2m_A          144 AFALDKRFGTVVIS  157 (299)
T ss_dssp             BCCCSCCEEEEEEC
T ss_pred             cCCcCCCcCEEEEC
Confidence            8 4554 9998864

>2ozv_A Hypothetical protein ATU0636; structural genomics, predicted transferase, predicted O-methyltransferase, PFAM PF05175; HET: MSE; 1.70A {Agrobacterium tumefaciens str}

Probab=99.29  E-value=8.9e-12  Score=81.87  Aligned_cols=68  Identities=15%  Similarity=0.219  Sum_probs=57.3

Q ss_pred             CCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeeh-HHHHHhCCCC----------CCeeEEEecCCCC--------CC-
Q 034578           21 FNNIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDL-QHVIATAPTH----------EGVSHVGGDMFDA--------IP-   80 (90)
Q Consensus        21 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~----------~rv~~~~~d~~~~--------~p-   80 (90)
                      ..+..+|||+|||+|.++..+++++|..+++++|+ |.+++.|+++          +|++++.+|+.+.        ++ 
T Consensus        34 ~~~~~~VLDlG~G~G~~~l~la~~~~~~~v~gvDi~~~~~~~a~~n~~~~~~~~l~~~v~~~~~D~~~~~~~~~~~~~~~  113 (260)
T 2ozv_A           34 DDRACRIADLGAGAGAAGMAVAARLEKAEVTLYERSQEMAEFARRSLELPDNAAFSARIEVLEADVTLRAKARVEAGLPD  113 (260)
T ss_dssp             CCSCEEEEECCSSSSHHHHHHHHHCTTEEEEEEESSHHHHHHHHHHTTSGGGTTTGGGEEEEECCTTCCHHHHHHTTCCT
T ss_pred             ccCCCEEEEeCChHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHhhhhCCCcceEEEEeCCHHHHhhhhhhhccCC
Confidence            44567999999999999999999999999999999 9988877541          3699999999874        23 


Q ss_pred             c-ccEEEee
Q 034578           81 N-ADAVFMK   88 (90)
Q Consensus        81 ~-~D~i~l~   88 (90)
                      . ||+|+++
T Consensus       114 ~~fD~Vv~n  122 (260)
T 2ozv_A          114 EHFHHVIMN  122 (260)
T ss_dssp             TCEEEEEEC
T ss_pred             CCcCEEEEC
Confidence            3 9999985

>3m33_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MCSG, midwest center for structural genomics; 2.19A {Deinococcus radiodurans}

Probab=99.29  E-value=1.5e-11  Score=78.83  Aligned_cols=76  Identities=11%  Similarity=0.116  Sum_probs=60.0

Q ss_pred             hhHHHHHhhcccCCCCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeeh-HHHHHhCCC-CCCeeEEEecCCC--CCC--
Q 034578            7 ITMKAFVSHYKVDGFNNIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDL-QHVIATAPT-HEGVSHVGGDMFD--AIP--   80 (90)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~-~~rv~~~~~d~~~--~~p--   80 (90)
                      .+.+.++..+.    .+..+|||+|||+|.++..+++.  ..+++++|+ |.+++.+++ .++++++.+|+.+  +++  
T Consensus        36 ~l~~~~~~~~~----~~~~~vLDiGcG~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~  109 (226)
T 3m33_A           36 LTFDLWLSRLL----TPQTRVLEAGCGHGPDAARFGPQ--AARWAAYDFSPELLKLARANAPHADVYEWNGKGELPAGLG  109 (226)
T ss_dssp             HHHHHHHHHHC----CTTCEEEEESCTTSHHHHHHGGG--SSEEEEEESCHHHHHHHHHHCTTSEEEECCSCSSCCTTCC
T ss_pred             HHHHHHHHhcC----CCCCeEEEeCCCCCHHHHHHHHc--CCEEEEEECCHHHHHHHHHhCCCceEEEcchhhccCCcCC
Confidence            34444544332    34679999999999999999998  579999999 999998876 4789999999976  333  


Q ss_pred             -cccEEEee
Q 034578           81 -NADAVFMK   88 (90)
Q Consensus        81 -~~D~i~l~   88 (90)
                       .+|+|+.+
T Consensus       110 ~~fD~v~~~  118 (226)
T 3m33_A          110 APFGLIVSR  118 (226)
T ss_dssp             CCEEEEEEE
T ss_pred             CCEEEEEeC
Confidence             29999874

>2fca_A TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bacillus subtilis} SCOP: c.66.1.53

Probab=99.29  E-value=5e-12  Score=80.82  Aligned_cols=66  Identities=24%  Similarity=0.387  Sum_probs=55.9

Q ss_pred             CCCeEEEecCCchHHHHHHHHHCCCCeEEEeeh-HHHHHhCCC------CCCeeEEEecCCC-C--CCc--ccEEEee
Q 034578           23 NIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDL-QHVIATAPT------HEGVSHVGGDMFD-A--IPN--ADAVFMK   88 (90)
Q Consensus        23 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~------~~rv~~~~~d~~~-~--~p~--~D~i~l~   88 (90)
                      ...+|||||||+|.++..+++.+|+.+++++|+ +.+++.|++      ..+++++.+|+.+ +  ++.  +|.|++.
T Consensus        38 ~~~~vLDiGcG~G~~~~~la~~~p~~~v~giD~s~~~l~~a~~~~~~~~~~nv~~~~~d~~~l~~~~~~~~~d~v~~~  115 (213)
T 2fca_A           38 DNPIHIEVGTGKGQFISGMAKQNPDINYIGIELFKSVIVTAVQKVKDSEAQNVKLLNIDADTLTDVFEPGEVKRVYLN  115 (213)
T ss_dssp             CCCEEEEECCTTSHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHSCCSSEEEECCCGGGHHHHCCTTSCCEEEEE
T ss_pred             CCceEEEEecCCCHHHHHHHHHCCCCCEEEEEechHHHHHHHHHHHHcCCCCEEEEeCCHHHHHhhcCcCCcCEEEEE
Confidence            356899999999999999999999999999999 999988765      2579999999876 2  443  8988764

>2qe6_A Uncharacterized protein TFU_2867; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: NEP SAM; 1.95A {Thermobifida fusca}

Probab=99.29  E-value=1.3e-11  Score=81.93  Aligned_cols=68  Identities=16%  Similarity=0.270  Sum_probs=57.1

Q ss_pred             CCCeEEEecCCc---hHHHHHHHHHCCCCeEEEeeh-HHHHHhCCC----CCCeeEEEecCCCC------------C--C
Q 034578           23 NIRSMVDVGGGT---GTVLAEIVKSYPHIKGINFDL-QHVIATAPT----HEGVSHVGGDMFDA------------I--P   80 (90)
Q Consensus        23 ~~~~vlDvG~G~---G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~----~~rv~~~~~d~~~~------------~--p   80 (90)
                      +..+|||||||+   |.++..+.+.+|+.+++++|+ |.|++.+++    .++++++.+|+.+.            +  .
T Consensus        77 ~~~~vLDlGcG~pt~G~~~~~~~~~~p~~~v~~vD~sp~~l~~Ar~~~~~~~~v~~~~~D~~~~~~~~~~~~~~~~~d~~  156 (274)
T 2qe6_A           77 GISQFLDLGSGLPTVQNTHEVAQSVNPDARVVYVDIDPMVLTHGRALLAKDPNTAVFTADVRDPEYILNHPDVRRMIDFS  156 (274)
T ss_dssp             CCCEEEEETCCSCCSSCHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHTTCTTEEEEECCTTCHHHHHHSHHHHHHCCTT
T ss_pred             CCCEEEEECCCCCCCChHHHHHHHhCCCCEEEEEECChHHHHHHHHhcCCCCCeEEEEeeCCCchhhhccchhhccCCCC
Confidence            457999999999   999888888899999999999 999998875    37899999999762            2  2


Q ss_pred             cccEEEeecC
Q 034578           81 NADAVFMKVA   90 (90)
Q Consensus        81 ~~D~i~l~~v   90 (90)
                      .+|+|++..+
T Consensus       157 ~~d~v~~~~v  166 (274)
T 2qe6_A          157 RPAAIMLVGM  166 (274)
T ss_dssp             SCCEEEETTT
T ss_pred             CCEEEEEech
Confidence            4899987653

>1dus_A MJ0882; hypothetical protein, methanococcus jannaschii, structural genomics, BSGC structure funded by NIH; 1.80A {Methanocaldococcus jannaschii} SCOP: c.66.1.4

Probab=99.29  E-value=1.9e-11  Score=75.51  Aligned_cols=78  Identities=14%  Similarity=0.264  Sum_probs=63.6

Q ss_pred             hhHHHHHhhcccCCCCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeeh-HHHHHhCCCC------C--CeeEEEecCCC
Q 034578            7 ITMKAFVSHYKVDGFNNIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDL-QHVIATAPTH------E--GVSHVGGDMFD   77 (90)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~------~--rv~~~~~d~~~   77 (90)
                      ...+.+++.+.   ..+..+|||+|||+|.++..+++.  ..+++++|+ |.+++.++++      .  |++++.+|+.+
T Consensus        39 ~~~~~l~~~~~---~~~~~~vLdiG~G~G~~~~~~~~~--~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~  113 (194)
T 1dus_A           39 KGTKILVENVV---VDKDDDILDLGCGYGVIGIALADE--VKSTTMADINRRAIKLAKENIKLNNLDNYDIRVVHSDLYE  113 (194)
T ss_dssp             HHHHHHHHHCC---CCTTCEEEEETCTTSHHHHHHGGG--SSEEEEEESCHHHHHHHHHHHHHTTCTTSCEEEEECSTTT
T ss_pred             hHHHHHHHHcc---cCCCCeEEEeCCCCCHHHHHHHHc--CCeEEEEECCHHHHHHHHHHHHHcCCCccceEEEECchhc
Confidence            45667777776   556789999999999999999998  789999999 9998887651      3  49999999988


Q ss_pred             CCC--cccEEEeec
Q 034578           78 AIP--NADAVFMKV   89 (90)
Q Consensus        78 ~~p--~~D~i~l~~   89 (90)
                      ..+  .+|+|+++.
T Consensus       114 ~~~~~~~D~v~~~~  127 (194)
T 1dus_A          114 NVKDRKYNKIITNP  127 (194)
T ss_dssp             TCTTSCEEEEEECC
T ss_pred             ccccCCceEEEECC
Confidence            554  399999753

>1xdz_A Methyltransferase GIDB; MCSG, protein structure initiative, structural genomics, methyltransferase fold, PSI; 1.60A {Bacillus subtilis} SCOP: c.66.1.20

Probab=99.28  E-value=4e-12  Score=82.24  Aligned_cols=68  Identities=21%  Similarity=0.259  Sum_probs=56.9

Q ss_pred             CCCCeEEEecCCchHHHHHHHHHCCCCeEEEeeh-HHHHHhCCC------CCCeeEEEecCCC-CC----Cc-ccEEEee
Q 034578           22 NNIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDL-QHVIATAPT------HEGVSHVGGDMFD-AI----PN-ADAVFMK   88 (90)
Q Consensus        22 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~------~~rv~~~~~d~~~-~~----p~-~D~i~l~   88 (90)
                      .+..+|||+|||+|.++..+++..|..+++++|+ +.+++.+++      ..+++++.+|+.+ +.    +. ||+|++.
T Consensus        69 ~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~V~~~  148 (240)
T 1xdz_A           69 NQVNTICDVGAGAGFPSLPIKICFPHLHVTIVDSLNKRITFLEKLSEALQLENTTFCHDRAETFGQRKDVRESYDIVTAR  148 (240)
T ss_dssp             GGCCEEEEECSSSCTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHTCSSEEEEESCHHHHTTCTTTTTCEEEEEEE
T ss_pred             CCCCEEEEecCCCCHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEeccHHHhcccccccCCccEEEEe
Confidence            3567999999999999999999999999999999 999988865      2479999999866 32    23 9999975


Q ss_pred             c
Q 034578           89 V   89 (90)
Q Consensus        89 ~   89 (90)
                      .
T Consensus       149 ~  149 (240)
T 1xdz_A          149 A  149 (240)
T ss_dssp             C
T ss_pred             c
Confidence            4

>2pjd_A Ribosomal RNA small subunit methyltransferase C; gene duplication, RNA modification, SAM binding; 2.10A {Escherichia coli}

Probab=99.28  E-value=5e-12  Score=85.91  Aligned_cols=78  Identities=14%  Similarity=0.242  Sum_probs=63.3

Q ss_pred             HHHHHhhcccCCCCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeeh-HHHHHhCCC-----CCCeeEEEecCCCCCCc-
Q 034578            9 MKAFVSHYKVDGFNNIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDL-QHVIATAPT-----HEGVSHVGGDMFDAIPN-   81 (90)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~-----~~rv~~~~~d~~~~~p~-   81 (90)
                      .+.+++.++   .....+|||+|||+|.++..+++.+|+.+++++|+ +.+++.+++     ..+.+++.+|+++..+. 
T Consensus       185 ~~~ll~~l~---~~~~~~VLDlGcG~G~~~~~la~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~d~~~~~~~~  261 (343)
T 2pjd_A          185 SQLLLSTLT---PHTKGKVLDVGCGAGVLSVAFARHSPKIRLTLCDVSAPAVEASRATLAANGVEGEVFASNVFSEVKGR  261 (343)
T ss_dssp             HHHHHHHSC---TTCCSBCCBTTCTTSHHHHHHHHHCTTCBCEEEESBHHHHHHHHHHHHHTTCCCEEEECSTTTTCCSC
T ss_pred             HHHHHHhcC---cCCCCeEEEecCccCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCCCEEEEccccccccCC
Confidence            566677775   33457899999999999999999999999999999 999988875     23467889999875444 


Q ss_pred             ccEEEeec
Q 034578           82 ADAVFMKV   89 (90)
Q Consensus        82 ~D~i~l~~   89 (90)
                      +|+|+++.
T Consensus       262 fD~Iv~~~  269 (343)
T 2pjd_A          262 FDMIISNP  269 (343)
T ss_dssp             EEEEEECC
T ss_pred             eeEEEECC
Confidence            99999863

>3grz_A L11 mtase, ribosomal protein L11 methyltransferase; methylase, SAM-binding domain, PSI-2, nysgxrc; 2.00A {Lactobacillus delbrueckii subsp}

Probab=99.28  E-value=2.8e-11  Score=76.23  Aligned_cols=66  Identities=14%  Similarity=0.231  Sum_probs=55.1

Q ss_pred             CCCeEEEecCCchHHHHHHHHHCCCCeEEEeeh-HHHHHhCCCC------CCeeEEEecCCCCCCc-ccEEEeec
Q 034578           23 NIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDL-QHVIATAPTH------EGVSHVGGDMFDAIPN-ADAVFMKV   89 (90)
Q Consensus        23 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~------~rv~~~~~d~~~~~p~-~D~i~l~~   89 (90)
                      +..+|||+|||+|.++..+++ .+..+++++|+ |.+++.++++      .+++++.+|+.+..+. +|+|+++.
T Consensus        60 ~~~~vLDiG~G~G~~~~~l~~-~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~fD~i~~~~  133 (205)
T 3grz_A           60 KPLTVADVGTGSGILAIAAHK-LGAKSVLATDISDESMTAAEENAALNGIYDIALQKTSLLADVDGKFDLIVANI  133 (205)
T ss_dssp             SCCEEEEETCTTSHHHHHHHH-TTCSEEEEEESCHHHHHHHHHHHHHTTCCCCEEEESSTTTTCCSCEEEEEEES
T ss_pred             CCCEEEEECCCCCHHHHHHHH-CCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEeccccccCCCCceEEEECC
Confidence            467999999999999999876 57789999999 9999888752      3499999999885554 99999764

>1jg1_A PIMT;, protein-L-isoaspartate O-methyltransferase; rossmann methyltransferase, protein repair isomerization; HET: SAH; 1.20A {Pyrococcus furiosus} SCOP: c.66.1.7 PDB: 1jg2_A* 1jg3_A* 1jg4_A*

Probab=99.28  E-value=6.7e-12  Score=80.88  Aligned_cols=80  Identities=15%  Similarity=0.189  Sum_probs=64.4

Q ss_pred             hhhHHHHHhhcccCCCCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeeh-HHHHHhCCCC------CCeeEEEecCCCC
Q 034578            6 KITMKAFVSHYKVDGFNNIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDL-QHVIATAPTH------EGVSHVGGDMFDA   78 (90)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~------~rv~~~~~d~~~~   78 (90)
                      ......+++.++   ..+..+|||+|||+|.++..+++..+ .+++++|+ |.+++.++++      .++++..+|+..+
T Consensus        77 ~~~~~~~~~~l~---~~~~~~vLdiG~G~G~~~~~la~~~~-~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~  152 (235)
T 1jg1_A           77 PHMVAIMLEIAN---LKPGMNILEVGTGSGWNAALISEIVK-TDVYTIERIPELVEFAKRNLERAGVKNVHVILGDGSKG  152 (235)
T ss_dssp             HHHHHHHHHHHT---CCTTCCEEEECCTTSHHHHHHHHHHC-SCEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGC
T ss_pred             HHHHHHHHHhcC---CCCCCEEEEEeCCcCHHHHHHHHHhC-CEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEECCcccC
Confidence            345666777666   55678999999999999999999988 89999998 9998888752      4699999998555


Q ss_pred             CCc---ccEEEeec
Q 034578           79 IPN---ADAVFMKV   89 (90)
Q Consensus        79 ~p~---~D~i~l~~   89 (90)
                      ++.   +|+|++..
T Consensus       153 ~~~~~~fD~Ii~~~  166 (235)
T 1jg1_A          153 FPPKAPYDVIIVTA  166 (235)
T ss_dssp             CGGGCCEEEEEECS
T ss_pred             CCCCCCccEEEECC
Confidence            542   89998753

>1wzn_A SAM-dependent methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43

Probab=99.27  E-value=1.5e-11  Score=79.39  Aligned_cols=65  Identities=26%  Similarity=0.438  Sum_probs=54.6

Q ss_pred             CCCCeEEEecCCchHHHHHHHHHCCCCeEEEeeh-HHHHHhCCC-----CCCeeEEEecCCC-CCCc-ccEEEee
Q 034578           22 NNIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDL-QHVIATAPT-----HEGVSHVGGDMFD-AIPN-ADAVFMK   88 (90)
Q Consensus        22 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~-----~~rv~~~~~d~~~-~~p~-~D~i~l~   88 (90)
                      .+..+|||+|||+|.++..+++.  +.+++++|+ |.+++.+++     ..+++++.+|+.+ +.+. +|+|++.
T Consensus        40 ~~~~~vLDlGcG~G~~~~~l~~~--~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~fD~v~~~  112 (252)
T 1wzn_A           40 REVRRVLDLACGTGIPTLELAER--GYEVVGLDLHEEMLRVARRKAKERNLKIEFLQGDVLEIAFKNEFDAVTMF  112 (252)
T ss_dssp             SCCCEEEEETCTTCHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHTTCCCEEEESCGGGCCCCSCEEEEEEC
T ss_pred             cCCCEEEEeCCCCCHHHHHHHHC--CCeEEEEECCHHHHHHHHHHHHhcCCceEEEECChhhcccCCCccEEEEc
Confidence            45679999999999999999987  578999999 999988875     2479999999987 4454 9999863

>2esr_A Methyltransferase; structural genomics, hypothetical protein, streptococcus PYO PSI, protein structure initiative; HET: GLC; 1.80A {Streptococcus pyogenes} SCOP: c.66.1.46

Probab=99.27  E-value=3.2e-12  Score=78.84  Aligned_cols=81  Identities=15%  Similarity=0.146  Sum_probs=61.6

Q ss_pred             hhhhHHHHHhhcccCCCCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeeh-HHHHHhCCCC-------CCeeEEEecCC
Q 034578            5 TKITMKAFVSHYKVDGFNNIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDL-QHVIATAPTH-------EGVSHVGGDMF   76 (90)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~-------~rv~~~~~d~~   76 (90)
                      +..+.+.+++.+..  ..+..+|||+|||+|.++..++++ +..+++++|+ +.+++.++++       ++++++.+|+.
T Consensus        15 ~~~~~~~~~~~l~~--~~~~~~vLDlGcG~G~~~~~l~~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~   91 (177)
T 2esr_A           15 SDKVRGAIFNMIGP--YFNGGRVLDLFAGSGGLAIEAVSR-GMSAAVLVEKNRKAQAIIQDNIIMTKAENRFTLLKMEAE   91 (177)
T ss_dssp             ---CHHHHHHHHCS--CCCSCEEEEETCTTCHHHHHHHHT-TCCEEEEECCCHHHHHHHHHHHHTTTCGGGEEEECSCHH
T ss_pred             HHHHHHHHHHHHHh--hcCCCeEEEeCCCCCHHHHHHHHc-CCCEEEEEECCHHHHHHHHHHHHHcCCCCceEEEECcHH
Confidence            34455666666652  345679999999999999999987 6679999999 9999888651       47999999987


Q ss_pred             CC---CCc-ccEEEee
Q 034578           77 DA---IPN-ADAVFMK   88 (90)
Q Consensus        77 ~~---~p~-~D~i~l~   88 (90)
                      +.   .+. +|+|++.
T Consensus        92 ~~~~~~~~~fD~i~~~  107 (177)
T 2esr_A           92 RAIDCLTGRFDLVFLD  107 (177)
T ss_dssp             HHHHHBCSCEEEEEEC
T ss_pred             HhHHhhcCCCCEEEEC
Confidence            72   223 9999875

>3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis}

Probab=99.27  E-value=1.7e-12  Score=86.54  Aligned_cols=69  Identities=12%  Similarity=0.090  Sum_probs=57.9

Q ss_pred             CCCCCeEEEecCCchHHHHHHH-HHCCCCeEEEeeh-HHHHHhCCC-------CCCeeEEEecCCC-CCCc-ccEEEeec
Q 034578           21 FNNIRSMVDVGGGTGTVLAEIV-KSYPHIKGINFDL-QHVIATAPT-------HEGVSHVGGDMFD-AIPN-ADAVFMKV   89 (90)
Q Consensus        21 ~~~~~~vlDvG~G~G~~~~~l~-~~~p~~~~~~~D~-p~~~~~a~~-------~~rv~~~~~d~~~-~~p~-~D~i~l~~   89 (90)
                      +.+..+|||||||+|.++..++ ..+|..+++++|+ |.+++.+++       .++++++.+|+.+ +++. +|+|++..
T Consensus       116 l~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~fD~v~~~~  195 (305)
T 3ocj_A          116 LRPGCVVASVPCGWMSELLALDYSACPGVQLVGIDYDPEALDGATRLAAGHALAGQITLHRQDAWKLDTREGYDLLTSNG  195 (305)
T ss_dssp             CCTTCEEEETTCTTCHHHHTSCCTTCTTCEEEEEESCHHHHHHHHHHHTTSTTGGGEEEEECCGGGCCCCSCEEEEECCS
T ss_pred             CCCCCEEEEecCCCCHHHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHhcCCCCceEEEECchhcCCccCCeEEEEECC
Confidence            3467899999999999999996 6689999999999 999988765       2469999999987 4444 99999864

>3gru_A Dimethyladenosine transferase; rossman fold, ribosomal assem adenosyl-L-methionine, rRNA, methyltransferase, RNA-binding processing; HET: AMP; 1.60A {Methanocaldococcus jannaschii} PDB: 3grr_A* 3grv_A* 3gry_A* 3fyd_A 3fyc_A*

Probab=99.27  E-value=1.6e-11  Score=82.64  Aligned_cols=77  Identities=14%  Similarity=0.214  Sum_probs=64.5

Q ss_pred             hhHHHHHhhcccCCCCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeeh-HHHHHhCCC----CCCeeEEEecCCC-CCC
Q 034578            7 ITMKAFVSHYKVDGFNNIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDL-QHVIATAPT----HEGVSHVGGDMFD-AIP   80 (90)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~----~~rv~~~~~d~~~-~~p   80 (90)
                      .+++.+++.+.   ..+..+|||||||+|.++..++++  ..+++++|+ +.+++.+++    .++++++.+|+.+ +++
T Consensus        37 ~i~~~Iv~~l~---~~~~~~VLEIG~G~G~lT~~La~~--~~~V~aVEid~~li~~a~~~~~~~~~v~vi~gD~l~~~~~  111 (295)
T 3gru_A           37 NFVNKAVESAN---LTKDDVVLEIGLGKGILTEELAKN--AKKVYVIEIDKSLEPYANKLKELYNNIEIIWGDALKVDLN  111 (295)
T ss_dssp             HHHHHHHHHTT---CCTTCEEEEECCTTSHHHHHHHHH--SSEEEEEESCGGGHHHHHHHHHHCSSEEEEESCTTTSCGG
T ss_pred             HHHHHHHHhcC---CCCcCEEEEECCCchHHHHHHHhc--CCEEEEEECCHHHHHHHHHHhccCCCeEEEECchhhCCcc
Confidence            45677777777   566789999999999999999998  578999999 999888775    3789999999998 666


Q ss_pred             c--ccEEEee
Q 034578           81 N--ADAVFMK   88 (90)
Q Consensus        81 ~--~D~i~l~   88 (90)
                      .  +|.|+.+
T Consensus       112 ~~~fD~Iv~N  121 (295)
T 3gru_A          112 KLDFNKVVAN  121 (295)
T ss_dssp             GSCCSEEEEE
T ss_pred             cCCccEEEEe
Confidence            5  8998864

>3tma_A Methyltransferase; thump domain; 2.05A {Thermus thermophilus}

Probab=99.27  E-value=5.6e-12  Score=85.88  Aligned_cols=82  Identities=16%  Similarity=0.131  Sum_probs=67.6

Q ss_pred             chhhhHHHHHhhcccCCCCCCCeEEEecCCchHHHHHHHHHC-CCCeEEEeeh-HHHHHhCCCC------CCeeEEEecC
Q 034578            4 TTKITMKAFVSHYKVDGFNNIRSMVDVGGGTGTVLAEIVKSY-PHIKGINFDL-QHVIATAPTH------EGVSHVGGDM   75 (90)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~-p~~~~~~~D~-p~~~~~a~~~------~rv~~~~~d~   75 (90)
                      ....++..++....   +.+..+|||+|||+|.++++++... |..+++++|+ |.+++.|+++      +++++..+|+
T Consensus       187 l~~~la~~l~~~~~---~~~~~~vLD~gcGsG~~~ie~a~~~~~~~~v~g~Di~~~~i~~a~~n~~~~g~~~i~~~~~D~  263 (354)
T 3tma_A          187 LTPVLAQALLRLAD---ARPGMRVLDPFTGSGTIALEAASTLGPTSPVYAGDLDEKRLGLAREAALASGLSWIRFLRADA  263 (354)
T ss_dssp             CCHHHHHHHHHHTT---CCTTCCEEESSCTTSHHHHHHHHHHCTTSCEEEEESCHHHHHHHHHHHHHTTCTTCEEEECCG
T ss_pred             cCHHHHHHHHHHhC---CCCCCEEEeCCCCcCHHHHHHHHhhCCCceEEEEECCHHHHHHHHHHHHHcCCCceEEEeCCh
Confidence            44566777777777   5667899999999999999999998 8999999999 9999988762      3799999999


Q ss_pred             CC-CCC--cccEEEee
Q 034578           76 FD-AIP--NADAVFMK   88 (90)
Q Consensus        76 ~~-~~p--~~D~i~l~   88 (90)
                      .+ +.+  .+|+|+++
T Consensus       264 ~~~~~~~~~~D~Ii~n  279 (354)
T 3tma_A          264 RHLPRFFPEVDRILAN  279 (354)
T ss_dssp             GGGGGTCCCCSEEEEC
T ss_pred             hhCccccCCCCEEEEC
Confidence            87 332  37999873

>1o54_A SAM-dependent O-methyltransferase; TM0748, structural genomi PSI, protein structure initiative, joint center for structu genomics; 1.65A {Thermotoga maritima} SCOP: c.66.1.13

Probab=99.27  E-value=1.1e-11  Score=81.61  Aligned_cols=77  Identities=17%  Similarity=0.253  Sum_probs=63.2

Q ss_pred             HHHHHhhcccCCCCCCCeEEEecCCchHHHHHHHHH-CCCCeEEEeeh-HHHHHhCCCC-------CCeeEEEecCCCCC
Q 034578            9 MKAFVSHYKVDGFNNIRSMVDVGGGTGTVLAEIVKS-YPHIKGINFDL-QHVIATAPTH-------EGVSHVGGDMFDAI   79 (90)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~-~p~~~~~~~D~-p~~~~~a~~~-------~rv~~~~~d~~~~~   79 (90)
                      +..++..++   ..+..+|||+|||+|.++..++++ .|..+++++|+ |.+++.++++       ++++++.+|+.+.+
T Consensus       101 ~~~i~~~~~---~~~~~~VLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~  177 (277)
T 1o54_A          101 SSFIAMMLD---VKEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWGLIERVTIKVRDISEGF  177 (277)
T ss_dssp             HHHHHHHTT---CCTTCEEEEECCTTSHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHHHHTTCGGGEEEECCCGGGCC
T ss_pred             HHHHHHHhC---CCCCCEEEEECCcCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHcCCCCCEEEEECCHHHcc
Confidence            345555555   556789999999999999999999 68899999999 9998888752       58999999998765


Q ss_pred             Cc--ccEEEee
Q 034578           80 PN--ADAVFMK   88 (90)
Q Consensus        80 p~--~D~i~l~   88 (90)
                      +.  +|+|++.
T Consensus       178 ~~~~~D~V~~~  188 (277)
T 1o54_A          178 DEKDVDALFLD  188 (277)
T ss_dssp             SCCSEEEEEEC
T ss_pred             cCCccCEEEEC
Confidence            53  9999874

>2fhp_A Methylase, putative; alpha-beta-alpha sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.60A {Enterococcus faecalis} SCOP: c.66.1.46

Probab=99.27  E-value=5.1e-12  Score=78.13  Aligned_cols=81  Identities=16%  Similarity=0.116  Sum_probs=63.0

Q ss_pred             hhhhHHHHHhhcccCCCCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeeh-HHHHHhCCCC-------CCeeEEEecCC
Q 034578            5 TKITMKAFVSHYKVDGFNNIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDL-QHVIATAPTH-------EGVSHVGGDMF   76 (90)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~-------~rv~~~~~d~~   76 (90)
                      +..+.+.+++.+..  ..+..+|||+|||+|.++..+++ .+..+++++|+ |.+++.++++       ++++++.+|+.
T Consensus        28 ~~~~~~~~~~~l~~--~~~~~~vLD~GcG~G~~~~~~~~-~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~  104 (187)
T 2fhp_A           28 TDKVKESIFNMIGP--YFDGGMALDLYSGSGGLAIEAVS-RGMDKSICIEKNFAALKVIKENIAITKEPEKFEVRKMDAN  104 (187)
T ss_dssp             CHHHHHHHHHHHCS--CCSSCEEEETTCTTCHHHHHHHH-TTCSEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHH
T ss_pred             HHHHHHHHHHHHHh--hcCCCCEEEeCCccCHHHHHHHH-cCCCEEEEEECCHHHHHHHHHHHHHhCCCcceEEEECcHH
Confidence            44556666666642  34567999999999999999888 46679999999 9999988752       57999999997


Q ss_pred             CCC------C-cccEEEee
Q 034578           77 DAI------P-NADAVFMK   88 (90)
Q Consensus        77 ~~~------p-~~D~i~l~   88 (90)
                      +..      + .+|+|++.
T Consensus       105 ~~~~~~~~~~~~fD~i~~~  123 (187)
T 2fhp_A          105 RALEQFYEEKLQFDLVLLD  123 (187)
T ss_dssp             HHHHHHHHTTCCEEEEEEC
T ss_pred             HHHHHHHhcCCCCCEEEEC
Confidence            721      2 39999975

>3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti}

Probab=99.26  E-value=2.2e-11  Score=77.98  Aligned_cols=76  Identities=20%  Similarity=0.208  Sum_probs=59.7

Q ss_pred             HHHhhcccCCCCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeeh-HHHHHhCCCC---CCeeEEEecCCC-CCCc--cc
Q 034578           11 AFVSHYKVDGFNNIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDL-QHVIATAPTH---EGVSHVGGDMFD-AIPN--AD   83 (90)
Q Consensus        11 ~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~---~rv~~~~~d~~~-~~p~--~D   83 (90)
                      .+.+.++   ..+..+|||+|||+|.++..++++. ..+++++|+ +.+++.+++.   .+++++.+|+.+ +++.  +|
T Consensus        34 ~l~~~~~---~~~~~~vLdiG~G~G~~~~~l~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~~~~~fD  109 (243)
T 3bkw_A           34 ALRAMLP---EVGGLRIVDLGCGFGWFCRWAHEHG-ASYVLGLDLSEKMLARARAAGPDTGITYERADLDKLHLPQDSFD  109 (243)
T ss_dssp             HHHHHSC---CCTTCEEEEETCTTCHHHHHHHHTT-CSEEEEEESCHHHHHHHHHTSCSSSEEEEECCGGGCCCCTTCEE
T ss_pred             HHHHhcc---ccCCCEEEEEcCcCCHHHHHHHHCC-CCeEEEEcCCHHHHHHHHHhcccCCceEEEcChhhccCCCCCce
Confidence            4555555   3456899999999999999999873 238999999 9999888653   479999999987 4542  99


Q ss_pred             EEEeecC
Q 034578           84 AVFMKVA   90 (90)
Q Consensus        84 ~i~l~~v   90 (90)
                      +|++..+
T Consensus       110 ~v~~~~~  116 (243)
T 3bkw_A          110 LAYSSLA  116 (243)
T ss_dssp             EEEEESC
T ss_pred             EEEEecc
Confidence            9998753

>2gb4_A Thiopurine S-methyltransferase; 18204406, thiopurine methyltransferase, structural genomics, PSI, protein structure initiative; HET: SAH; 1.25A {Mus musculus} PDB: 3bgi_A* 3bgd_A* 2bzg_A* 2h11_A*

Probab=99.26  E-value=8.2e-12  Score=82.05  Aligned_cols=64  Identities=9%  Similarity=0.009  Sum_probs=53.5

Q ss_pred             CCCeEEEecCCchHHHHHHHHHCCCCeEEEeeh-HHHHHhCCC-----------------------CCCeeEEEecCCC-
Q 034578           23 NIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDL-QHVIATAPT-----------------------HEGVSHVGGDMFD-   77 (90)
Q Consensus        23 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~-----------------------~~rv~~~~~d~~~-   77 (90)
                      +..+|||+|||+|..+..|+++  +.+++++|+ |.+++.|++                       ..+++++.+|+++ 
T Consensus        68 ~~~~vLD~GCG~G~~~~~La~~--G~~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~D~~~l  145 (252)
T 2gb4_A           68 SGLRVFFPLCGKAIEMKWFADR--GHTVVGVEISEIGIREFFAEQNLSYTEEPLAEIAGAKVFKSSSGSISLYCCSIFDL  145 (252)
T ss_dssp             CSCEEEETTCTTCTHHHHHHHT--TCEEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEETTSSEEEEESCTTTG
T ss_pred             CCCeEEEeCCCCcHHHHHHHHC--CCeEEEEECCHHHHHHHHHhcccccccccccccccccccccCCCceEEEECccccC
Confidence            5679999999999999999987  568999999 999987742                       1579999999998 


Q ss_pred             CC---CcccEEEee
Q 034578           78 AI---PNADAVFMK   88 (90)
Q Consensus        78 ~~---p~~D~i~l~   88 (90)
                      +.   ..||+|+.+
T Consensus       146 ~~~~~~~FD~V~~~  159 (252)
T 2gb4_A          146 PRANIGKFDRIWDR  159 (252)
T ss_dssp             GGGCCCCEEEEEES
T ss_pred             CcccCCCEEEEEEh
Confidence            43   239999864

>3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405}

Probab=99.26  E-value=8.3e-12  Score=78.12  Aligned_cols=68  Identities=18%  Similarity=0.232  Sum_probs=56.6

Q ss_pred             CCCCCeEEEecCCchHHHHHHHHHC-CCCeEEEeeh-HHHHHhCCCC-------CCeeEEEecCCC-C-C-Cc-ccEEEe
Q 034578           21 FNNIRSMVDVGGGTGTVLAEIVKSY-PHIKGINFDL-QHVIATAPTH-------EGVSHVGGDMFD-A-I-PN-ADAVFM   87 (90)
Q Consensus        21 ~~~~~~vlDvG~G~G~~~~~l~~~~-p~~~~~~~D~-p~~~~~a~~~-------~rv~~~~~d~~~-~-~-p~-~D~i~l   87 (90)
                      ..+..+|||+|||+|.++..+++++ |..+++++|+ |.+++.++++       ++++++.+|+.+ + . +. +|+|++
T Consensus        20 ~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~v~~   99 (197)
T 3eey_A           20 VKEGDTVVDATCGNGNDTAFLASLVGENGRVFGFDIQDKAIANTTKKLTDLNLIDRVTLIKDGHQNMDKYIDCPVKAVMF   99 (197)
T ss_dssp             CCTTCEEEESCCTTSHHHHHHHHHHCTTCEEEEECSCHHHHHHHHHHHHHTTCGGGEEEECSCGGGGGGTCCSCEEEEEE
T ss_pred             CCCCCEEEEcCCCCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCeEEEECCHHHHhhhccCCceEEEE
Confidence            3456799999999999999999986 7789999999 9999988752       689999999865 2 2 33 999987


Q ss_pred             e
Q 034578           88 K   88 (90)
Q Consensus        88 ~   88 (90)
                      .
T Consensus       100 ~  100 (197)
T 3eey_A          100 N  100 (197)
T ss_dssp             E
T ss_pred             c
Confidence            5

>3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A*

Probab=99.26  E-value=1.7e-11  Score=82.60  Aligned_cols=68  Identities=15%  Similarity=0.189  Sum_probs=57.1

Q ss_pred             CCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeeh-HHHHHhCCCC------CCeeEEEecCCC-CCCcccEEEee
Q 034578           21 FNNIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDL-QHVIATAPTH------EGVSHVGGDMFD-AIPNADAVFMK   88 (90)
Q Consensus        21 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~------~rv~~~~~d~~~-~~p~~D~i~l~   88 (90)
                      ..+..+|||||||+|.++..++.+.++.+++++|+ |.+++.|++.      ++++++.+|..+ +-..||+|++.
T Consensus       120 l~~g~rVLDIGcG~G~~ta~~lA~~~ga~V~gIDis~~~l~~Ar~~~~~~gl~~v~~v~gDa~~l~d~~FDvV~~~  195 (298)
T 3fpf_A          120 FRRGERAVFIGGGPLPLTGILLSHVYGMRVNVVEIEPDIAELSRKVIEGLGVDGVNVITGDETVIDGLEFDVLMVA  195 (298)
T ss_dssp             CCTTCEEEEECCCSSCHHHHHHHHTTCCEEEEEESSHHHHHHHHHHHHHHTCCSEEEEESCGGGGGGCCCSEEEEC
T ss_pred             CCCcCEEEEECCCccHHHHHHHHHccCCEEEEEECCHHHHHHHHHHHHhcCCCCeEEEECchhhCCCCCcCEEEEC
Confidence            56789999999999988877777778999999999 9999998762      689999999987 32239999875

>2ex4_A Adrenal gland protein AD-003; methyltransferase, structural genomics, SGC, structural genomics consortium; HET: SAH; 1.75A {Homo sapiens} SCOP: c.66.1.42

Probab=99.25  E-value=6.3e-12  Score=81.03  Aligned_cols=67  Identities=13%  Similarity=0.182  Sum_probs=55.4

Q ss_pred             CCCeEEEecCCchHHHHHHHHHCCCCeEEEeeh-HHHHHhCCCC------CCeeEEEecCCC-CCCc--ccEEEeecC
Q 034578           23 NIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDL-QHVIATAPTH------EGVSHVGGDMFD-AIPN--ADAVFMKVA   90 (90)
Q Consensus        23 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~------~rv~~~~~d~~~-~~p~--~D~i~l~~v   90 (90)
                      +..+|||+|||+|.++..++++. ..+++++|+ +.+++.++++      .+++++.+|+.+ +.+.  +|+|++.++
T Consensus        79 ~~~~vLDiGcG~G~~~~~l~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~  155 (241)
T 2ex4_A           79 GTSCALDCGAGIGRITKRLLLPL-FREVDMVDITEDFLVQAKTYLGEEGKRVRNYFCCGLQDFTPEPDSYDVIWIQWV  155 (241)
T ss_dssp             CCSEEEEETCTTTHHHHHTTTTT-CSEEEEEESCHHHHHHHHHHTGGGGGGEEEEEECCGGGCCCCSSCEEEEEEESC
T ss_pred             CCCEEEEECCCCCHHHHHHHHhc-CCEEEEEeCCHHHHHHHHHHhhhcCCceEEEEEcChhhcCCCCCCEEEEEEcch
Confidence            46899999999999999999887 568999999 9999888652      358999999876 4443  999998753

>3ckk_A TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-adenosyl-L-methionine, tRNA Pro structural genomics, structural genomics consortium, SGC; HET: SAM; 1.55A {Homo sapiens}

Probab=99.25  E-value=1.8e-11  Score=79.65  Aligned_cols=66  Identities=14%  Similarity=0.289  Sum_probs=54.9

Q ss_pred             CCCeEEEecCCchHHHHHHHHHCCCCeEEEeeh-HHHHHhCC------------CCCCeeEEEecCCCC----CCc--cc
Q 034578           23 NIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDL-QHVIATAP------------THEGVSHVGGDMFDA----IPN--AD   83 (90)
Q Consensus        23 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~------------~~~rv~~~~~d~~~~----~p~--~D   83 (90)
                      +..+|||||||+|.++..+++++|+.+++++|+ +.+++.|+            ...+++++.+|+.+.    ++.  +|
T Consensus        46 ~~~~vLDiGcG~G~~~~~la~~~p~~~v~GiDis~~~l~~A~~~~~~l~~~~~~~~~nv~~~~~d~~~~l~~~~~~~~~D  125 (235)
T 3ckk_A           46 AQVEFADIGCGYGGLLVELSPLFPDTLILGLEIRVKVSDYVQDRIRALRAAPAGGFQNIACLRSNAMKHLPNFFYKGQLT  125 (235)
T ss_dssp             CCEEEEEETCTTCHHHHHHGGGSTTSEEEEEESCHHHHHHHHHHHHHHHHSTTCCCTTEEEEECCTTTCHHHHCCTTCEE
T ss_pred             CCCeEEEEccCCcHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHHHHHHhcCCCeEEEEECcHHHhhhhhCCCcCee
Confidence            456899999999999999999999999999999 99887653            136899999999762    333  89


Q ss_pred             EEEee
Q 034578           84 AVFMK   88 (90)
Q Consensus        84 ~i~l~   88 (90)
                      .|++.
T Consensus       126 ~v~~~  130 (235)
T 3ckk_A          126 KMFFL  130 (235)
T ss_dssp             EEEEE
T ss_pred             EEEEe
Confidence            98764

>3gjy_A Spermidine synthase; APC62791, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.47A {Corynebacterium glutamicum atcc 13032}

Probab=99.25  E-value=1.1e-11  Score=84.29  Aligned_cols=64  Identities=16%  Similarity=0.225  Sum_probs=55.8

Q ss_pred             CeEEEecCCchHHHHHHHHHCCCCeEEEeeh-HHHHHhCCC------CCCeeEEEecCCC---CCC-c-ccEEEee
Q 034578           25 RSMVDVGGGTGTVLAEIVKSYPHIKGINFDL-QHVIATAPT------HEGVSHVGGDMFD---AIP-N-ADAVFMK   88 (90)
Q Consensus        25 ~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~------~~rv~~~~~d~~~---~~p-~-~D~i~l~   88 (90)
                      .+|||||||+|.++..+++++|+.+++++|+ |.+++.+++      .+|++++.+|..+   ..+ . ||+|++.
T Consensus        91 ~rVLdIG~G~G~la~~la~~~p~~~v~~VEidp~vi~~Ar~~~~~~~~~rv~v~~~Da~~~l~~~~~~~fDvIi~D  166 (317)
T 3gjy_A           91 LRITHLGGGACTMARYFADVYPQSRNTVVELDAELARLSREWFDIPRAPRVKIRVDDARMVAESFTPASRDVIIRD  166 (317)
T ss_dssp             CEEEEESCGGGHHHHHHHHHSTTCEEEEEESCHHHHHHHHHHSCCCCTTTEEEEESCHHHHHHTCCTTCEEEEEEC
T ss_pred             CEEEEEECCcCHHHHHHHHHCCCcEEEEEECCHHHHHHHHHhccccCCCceEEEECcHHHHHhhccCCCCCEEEEC
Confidence            4999999999999999999999999999999 999998875      3689999999876   333 3 9999873

>4htf_A S-adenosylmethionine-dependent methyltransferase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE SAM; 1.60A {Escherichia coli}

Probab=99.25  E-value=1.3e-11  Score=81.29  Aligned_cols=65  Identities=20%  Similarity=0.302  Sum_probs=55.2

Q ss_pred             CCeEEEecCCchHHHHHHHHHCCCCeEEEeeh-HHHHHhCCCC-------CCeeEEEecCCC-C-CC-c-ccEEEeecC
Q 034578           24 IRSMVDVGGGTGTVLAEIVKSYPHIKGINFDL-QHVIATAPTH-------EGVSHVGGDMFD-A-IP-N-ADAVFMKVA   90 (90)
Q Consensus        24 ~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~-------~rv~~~~~d~~~-~-~p-~-~D~i~l~~v   90 (90)
                      ..+|||||||+|.++..+++.  ..+++++|+ |.+++.+++.       ++++++.+|+.+ + ++ . +|+|++..+
T Consensus        69 ~~~vLDiGcG~G~~~~~l~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~v~~~~~  145 (285)
T 4htf_A           69 KLRVLDAGGGEGQTAIKMAER--GHQVILCDLSAQMIDRAKQAAEAKGVSDNMQFIHCAAQDVASHLETPVDLILFHAV  145 (285)
T ss_dssp             CCEEEEETCTTCHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHC-CCGGGEEEEESCGGGTGGGCSSCEEEEEEESC
T ss_pred             CCEEEEeCCcchHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHhcCCCcceEEEEcCHHHhhhhcCCCceEEEECch
Confidence            579999999999999999998  679999999 9999888752       689999999987 3 33 3 999998753

>1vbf_A 231AA long hypothetical protein-L-isoaspartate O- methyltransferase; trimeric coiled coil assembly; 2.80A {Sulfolobus tokodaii} SCOP: c.66.1.7

Probab=99.24  E-value=2.8e-11  Score=77.34  Aligned_cols=78  Identities=14%  Similarity=0.137  Sum_probs=62.8

Q ss_pred             hhHHHHHhhcccCCCCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeeh-HHHHHhCCCC----CCeeEEEecCCCCCC-
Q 034578            7 ITMKAFVSHYKVDGFNNIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDL-QHVIATAPTH----EGVSHVGGDMFDAIP-   80 (90)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~----~rv~~~~~d~~~~~p-   80 (90)
                      .....+++.+.   ..+..+|||+|||+|.++..+++..  .+++++|+ |.+++.++++    ++++++.+|+.+.++ 
T Consensus        57 ~~~~~~~~~~~---~~~~~~vLdiG~G~G~~~~~l~~~~--~~v~~vD~~~~~~~~a~~~~~~~~~v~~~~~d~~~~~~~  131 (231)
T 1vbf_A           57 NLGIFMLDELD---LHKGQKVLEIGTGIGYYTALIAEIV--DKVVSVEINEKMYNYASKLLSYYNNIKLILGDGTLGYEE  131 (231)
T ss_dssp             HHHHHHHHHTT---CCTTCEEEEECCTTSHHHHHHHHHS--SEEEEEESCHHHHHHHHHHHTTCSSEEEEESCGGGCCGG
T ss_pred             HHHHHHHHhcC---CCCCCEEEEEcCCCCHHHHHHHHHc--CEEEEEeCCHHHHHHHHHHHhhcCCeEEEECCccccccc
Confidence            44556666666   5567899999999999999999986  78999999 9999888652    389999999987443 


Q ss_pred             --cccEEEeec
Q 034578           81 --NADAVFMKV   89 (90)
Q Consensus        81 --~~D~i~l~~   89 (90)
                        .+|+|++..
T Consensus       132 ~~~fD~v~~~~  142 (231)
T 1vbf_A          132 EKPYDRVVVWA  142 (231)
T ss_dssp             GCCEEEEEESS
T ss_pred             CCCccEEEECC
Confidence              289998764

>3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris}

Probab=99.24  E-value=7.3e-12  Score=79.13  Aligned_cols=67  Identities=15%  Similarity=0.111  Sum_probs=55.9

Q ss_pred             CCCCeEEEecCCchHHHHHHHHHCCCCeEEEeeh-HHHHHhCCCCCCeeEEEecCCC-CCCc-ccEEEeecC
Q 034578           22 NNIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDL-QHVIATAPTHEGVSHVGGDMFD-AIPN-ADAVFMKVA   90 (90)
Q Consensus        22 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~~rv~~~~~d~~~-~~p~-~D~i~l~~v   90 (90)
                      .+..+|||+|||+|.++..+++.  ..+++++|+ +.+++.++++.++++..+|+.+ +.+. +|+|++..+
T Consensus        42 ~~~~~vLDiGcG~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~d~~~~~~~~~fD~v~~~~~  111 (211)
T 3e23_A           42 PAGAKILELGCGAGYQAEAMLAA--GFDVDATDGSPELAAEASRRLGRPVRTMLFHQLDAIDAYDAVWAHAC  111 (211)
T ss_dssp             CTTCEEEESSCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHTSCCEECCGGGCCCCSCEEEEEECSC
T ss_pred             CCCCcEEEECCCCCHHHHHHHHc--CCeEEEECCCHHHHHHHHHhcCCceEEeeeccCCCCCcEEEEEecCc
Confidence            35679999999999999999987  568999999 9999988876578888999877 4333 999998753

>1o9g_A RRNA methyltransferase; antibiotic resistance, Se-MAD; 1.5A {Streptomyces viridochromogenes} SCOP: c.66.1.29 PDB: 1o9h_A

Probab=99.24  E-value=7.7e-12  Score=81.25  Aligned_cols=55  Identities=13%  Similarity=0.046  Sum_probs=44.1

Q ss_pred             hhHHHHHhhcccCCCCCCCeEEEecCCchHHHHHHHHH--CCCCeEEEeeh-HHHHHhCCC
Q 034578            7 ITMKAFVSHYKVDGFNNIRSMVDVGGGTGTVLAEIVKS--YPHIKGINFDL-QHVIATAPT   64 (90)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~--~p~~~~~~~D~-p~~~~~a~~   64 (90)
                      .+.+.+++.+.   .....+|||+|||+|.++..+++.  +|..+++++|+ |.+++.|++
T Consensus        38 ~l~~~~l~~~~---~~~~~~vLD~gcGsG~~~~~la~~~~~~~~~v~gvDis~~~l~~A~~   95 (250)
T 1o9g_A           38 EIFQRALARLP---GDGPVTLWDPCCGSGYLLTVLGLLHRRSLRQVIASDVDPAPLELAAK   95 (250)
T ss_dssp             HHHHHHHHTSS---CCSCEEEEETTCTTSHHHHHHHHHTGGGEEEEEEEESCHHHHHHHHH
T ss_pred             HHHHHHHHhcc---cCCCCeEEECCCCCCHHHHHHHHHhccCCCeEEEEECCHHHHHHHHH
Confidence            34455555444   234579999999999999999998  78889999999 999998874

>3iv6_A Putative Zn-dependent alcohol dehydrogenase; alpha/beta fold, rossmann-fold, structural genomics, PSI-2, structure initiative; HET: SAM; 2.70A {Rhodobacter sphaeroides}

Probab=99.24  E-value=1.7e-11  Score=81.28  Aligned_cols=78  Identities=13%  Similarity=0.072  Sum_probs=57.0

Q ss_pred             hhHHHHHhhcccCCCCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeeh-HHHHHhCCCCCCeeEEEecCCC-CC-----
Q 034578            7 ITMKAFVSHYKVDGFNNIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDL-QHVIATAPTHEGVSHVGGDMFD-AI-----   79 (90)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~~rv~~~~~d~~~-~~-----   79 (90)
                      ...+.+++.++   ..+..+|||||||+|.++..++++  ..+++++|+ |.|++.++++-+-.++..++.+ +.     
T Consensus        32 ~~~~~il~~l~---l~~g~~VLDlGcGtG~~a~~La~~--g~~V~gvD~S~~ml~~Ar~~~~~~~v~~~~~~~~~~~~~~  106 (261)
T 3iv6_A           32 SDRENDIFLEN---IVPGSTVAVIGASTRFLIEKALER--GASVTVFDFSQRMCDDLAEALADRCVTIDLLDITAEIPKE  106 (261)
T ss_dssp             CHHHHHHHTTT---CCTTCEEEEECTTCHHHHHHHHHT--TCEEEEEESCHHHHHHHHHHTSSSCCEEEECCTTSCCCGG
T ss_pred             HHHHHHHHhcC---CCCcCEEEEEeCcchHHHHHHHhc--CCEEEEEECCHHHHHHHHHHHHhccceeeeeecccccccc
Confidence            45566777776   566789999999999999999987  468999999 9999988763111134444443 22     


Q ss_pred             -C-cccEEEeec
Q 034578           80 -P-NADAVFMKV   89 (90)
Q Consensus        80 -p-~~D~i~l~~   89 (90)
                       + .||+|+++.
T Consensus       107 ~~~~fD~Vv~~~  118 (261)
T 3iv6_A          107 LAGHFDFVLNDR  118 (261)
T ss_dssp             GTTCCSEEEEES
T ss_pred             cCCCccEEEEhh
Confidence             2 399999864

>1g8a_A Fibrillarin-like PRE-rRNA processing protein; rRNA binding, RNA binding, structural genomics, BSGC structure funded by NIH; 1.40A {Pyrococcus horikoshii} SCOP: c.66.1.3 PDB: 2nnw_B 3nmu_F* 3nvk_I* 3nvm_B 1pry_A

Probab=99.24  E-value=5.5e-11  Score=75.97  Aligned_cols=81  Identities=15%  Similarity=0.149  Sum_probs=59.4

Q ss_pred             hHHHHHhhcccCCCCCCCeEEEecCCchHHHHHHHHHC-CCCeEEEeeh-HHHHHhC----CCCCCeeEEEecCCCC---
Q 034578            8 TMKAFVSHYKVDGFNNIRSMVDVGGGTGTVLAEIVKSY-PHIKGINFDL-QHVIATA----PTHEGVSHVGGDMFDA---   78 (90)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~-p~~~~~~~D~-p~~~~~a----~~~~rv~~~~~d~~~~---   78 (90)
                      ....++..+....+.+..+|||+|||+|.++..+++.. |..+++++|+ |.+++.+    ++.++++++.+|+.+.   
T Consensus        58 ~~~~i~~~l~~~~~~~~~~vLDlG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~  137 (227)
T 1g8a_A           58 LGAAIMNGLKNFPIKPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEERRNIVPILGDATKPEEY  137 (227)
T ss_dssp             HHHHHHTTCCCCCCCTTCEEEEETTTSTTHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHSSCTTEEEEECCTTCGGGG
T ss_pred             HHHHHHhhHHhcCCCCCCEEEEEeccCCHHHHHHHHHhCCCeEEEEEECCHHHHHHHHHHHhccCCCEEEEccCCCcchh
Confidence            34556333331014566799999999999999999985 6789999999 8665544    4457899999999872   


Q ss_pred             --CCc-ccEEEee
Q 034578           79 --IPN-ADAVFMK   88 (90)
Q Consensus        79 --~p~-~D~i~l~   88 (90)
                        ++. +|+|++.
T Consensus       138 ~~~~~~~D~v~~~  150 (227)
T 1g8a_A          138 RALVPKVDVIFED  150 (227)
T ss_dssp             TTTCCCEEEEEEC
T ss_pred             hcccCCceEEEEC
Confidence              233 8999864

>3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate, antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A {Streptomyces venezuelae}

Probab=99.24  E-value=3e-11  Score=77.17  Aligned_cols=63  Identities=27%  Similarity=0.401  Sum_probs=54.5

Q ss_pred             CCCeEEEecCCchHHHHHHHHHCCCCeEEEeeh-HHHHHhCCCC-CCeeEEEecCCC-CCCc-ccEEEe
Q 034578           23 NIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDL-QHVIATAPTH-EGVSHVGGDMFD-AIPN-ADAVFM   87 (90)
Q Consensus        23 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~-~rv~~~~~d~~~-~~p~-~D~i~l   87 (90)
                      +..+|||+|||+|.++..++++++  +++++|+ |.+++.+++. ++++++.+|+.+ +.+. +|+|++
T Consensus        40 ~~~~vLdiG~G~G~~~~~l~~~~~--~v~~~D~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~D~v~~  106 (239)
T 3bxo_A           40 EASSLLDVACGTGTHLEHFTKEFG--DTAGLELSEDMLTHARKRLPDATLHQGDMRDFRLGRKFSAVVS  106 (239)
T ss_dssp             TCCEEEEETCTTSHHHHHHHHHHS--EEEEEESCHHHHHHHHHHCTTCEEEECCTTTCCCSSCEEEEEE
T ss_pred             CCCeEEEecccCCHHHHHHHHhCC--cEEEEeCCHHHHHHHHHhCCCCEEEECCHHHcccCCCCcEEEE
Confidence            567999999999999999999976  8999999 9999988763 679999999987 4444 999994

>3m70_A Tellurite resistance protein TEHB homolog; structural genomics, PSI-2, protein ST initiative; 1.95A {Haemophilus influenzae}

Probab=99.24  E-value=1.8e-11  Score=80.67  Aligned_cols=75  Identities=19%  Similarity=0.124  Sum_probs=59.9

Q ss_pred             HHHHhhcccCCCCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeeh-HHHHHhCCCC-----CCeeEEEecCCC-CCCc-
Q 034578           10 KAFVSHYKVDGFNNIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDL-QHVIATAPTH-----EGVSHVGGDMFD-AIPN-   81 (90)
Q Consensus        10 ~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~-----~rv~~~~~d~~~-~~p~-   81 (90)
                      ..+++.++   ..+..+|||+|||+|.++..+++.  ..+++++|+ +.+++.+++.     .+++++.+|+.+ +.+. 
T Consensus       110 ~~~~~~~~---~~~~~~vLD~GcG~G~~~~~l~~~--g~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~  184 (286)
T 3m70_A          110 GDVVDAAK---IISPCKVLDLGCGQGRNSLYLSLL--GYDVTSWDHNENSIAFLNETKEKENLNISTALYDINAANIQEN  184 (286)
T ss_dssp             HHHHHHHH---HSCSCEEEEESCTTCHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCGGGCCCCSC
T ss_pred             HHHHHHhh---ccCCCcEEEECCCCCHHHHHHHHC--CCeEEEEECCHHHHHHHHHHHHHcCCceEEEEeccccccccCC
Confidence            34455555   335689999999999999999998  569999999 9999887752     389999999987 3444 


Q ss_pred             ccEEEeec
Q 034578           82 ADAVFMKV   89 (90)
Q Consensus        82 ~D~i~l~~   89 (90)
                      +|+|+++.
T Consensus       185 fD~i~~~~  192 (286)
T 3m70_A          185 YDFIVSTV  192 (286)
T ss_dssp             EEEEEECS
T ss_pred             ccEEEEcc
Confidence            99999864

>2ipx_A RRNA 2'-O-methyltransferase fibrillarin; FBL, structural genomics, structural genomics consortium, SGC; HET: MTA; 1.82A {Homo sapiens}

Probab=99.24  E-value=4e-11  Score=77.07  Aligned_cols=68  Identities=13%  Similarity=0.139  Sum_probs=55.0

Q ss_pred             CCCCCeEEEecCCchHHHHHHHHHC-CCCeEEEeeh-HHHH----HhCCCCCCeeEEEecCCCC--C---C-cccEEEee
Q 034578           21 FNNIRSMVDVGGGTGTVLAEIVKSY-PHIKGINFDL-QHVI----ATAPTHEGVSHVGGDMFDA--I---P-NADAVFMK   88 (90)
Q Consensus        21 ~~~~~~vlDvG~G~G~~~~~l~~~~-p~~~~~~~D~-p~~~----~~a~~~~rv~~~~~d~~~~--~---p-~~D~i~l~   88 (90)
                      +.+..+|||+|||+|.++..+++.+ |..+++++|+ |.++    +.++++.+++++.+|+.+.  +   + .+|+|++.
T Consensus        75 ~~~~~~vLDlG~G~G~~~~~la~~~g~~~~v~gvD~s~~~i~~~~~~a~~~~~v~~~~~d~~~~~~~~~~~~~~D~V~~~  154 (233)
T 2ipx_A           75 IKPGAKVLYLGAASGTTVSHVSDIVGPDGLVYAVEFSHRSGRDLINLAKKRTNIIPVIEDARHPHKYRMLIAMVDVIFAD  154 (233)
T ss_dssp             CCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEECCCHHHHHHHHHHHHHCTTEEEECSCTTCGGGGGGGCCCEEEEEEC
T ss_pred             CCCCCEEEEEcccCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHhhccCCeEEEEcccCChhhhcccCCcEEEEEEc
Confidence            4566799999999999999999996 7889999999 7654    4444458899999999872  2   2 38999874

>2pxx_A Uncharacterized protein MGC2408; structural genomics consortium, SGC, methyltransferase, LOC84291, transferase; HET: SAH; 1.30A {Homo sapiens}

Probab=99.24  E-value=1.5e-11  Score=77.20  Aligned_cols=66  Identities=17%  Similarity=0.144  Sum_probs=55.5

Q ss_pred             CCCCeEEEecCCchHHHHHHHHHCCCCeEEEeeh-HHHHHhCCC----CCCeeEEEecCCC-CCCc--ccEEEee
Q 034578           22 NNIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDL-QHVIATAPT----HEGVSHVGGDMFD-AIPN--ADAVFMK   88 (90)
Q Consensus        22 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~----~~rv~~~~~d~~~-~~p~--~D~i~l~   88 (90)
                      .+..+|||+|||+|.++..+++..+. +++++|+ |.+++.+++    .++++++.+|+.+ +++.  +|+|+++
T Consensus        41 ~~~~~vLdiGcG~G~~~~~l~~~~~~-~v~~~D~s~~~~~~a~~~~~~~~~i~~~~~d~~~~~~~~~~fD~v~~~  114 (215)
T 2pxx_A           41 RPEDRILVLGCGNSALSYELFLGGFP-NVTSVDYSSVVVAAMQACYAHVPQLRWETMDVRKLDFPSASFDVVLEK  114 (215)
T ss_dssp             CTTCCEEEETCTTCSHHHHHHHTTCC-CEEEEESCHHHHHHHHHHTTTCTTCEEEECCTTSCCSCSSCEEEEEEE
T ss_pred             CCCCeEEEECCCCcHHHHHHHHcCCC-cEEEEeCCHHHHHHHHHhcccCCCcEEEEcchhcCCCCCCcccEEEEC
Confidence            35679999999999999999998665 8999999 999888765    2689999999987 5543  9999975

>3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032}

Probab=99.24  E-value=7.4e-12  Score=78.58  Aligned_cols=64  Identities=17%  Similarity=0.203  Sum_probs=55.4

Q ss_pred             CCeEEEecCCchHHHHHHHHHCCCCeEEEeeh-HHHHHhCCC-CCCeeEEEecCCC-CCC-c-ccEEEeec
Q 034578           24 IRSMVDVGGGTGTVLAEIVKSYPHIKGINFDL-QHVIATAPT-HEGVSHVGGDMFD-AIP-N-ADAVFMKV   89 (90)
Q Consensus        24 ~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~-~~rv~~~~~d~~~-~~p-~-~D~i~l~~   89 (90)
                      ..+|||+|||+|.++..++++  +.+++++|+ +.+++.+++ .++++++.+|+.+ +++ . +|+|++.+
T Consensus        42 ~~~vLDiGcG~G~~~~~l~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~  110 (203)
T 3h2b_A           42 DGVILDVGSGTGRWTGHLASL--GHQIEGLEPATRLVELARQTHPSVTFHHGTITDLSDSPKRWAGLLAWY  110 (203)
T ss_dssp             CSCEEEETCTTCHHHHHHHHT--TCCEEEECCCHHHHHHHHHHCTTSEEECCCGGGGGGSCCCEEEEEEES
T ss_pred             CCeEEEecCCCCHHHHHHHhc--CCeEEEEeCCHHHHHHHHHhCCCCeEEeCcccccccCCCCeEEEEehh
Confidence            578999999999999999998  568999999 999998876 4789999999987 444 3 99999865

>1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33

Probab=99.23  E-value=3.1e-11  Score=78.75  Aligned_cols=67  Identities=18%  Similarity=0.307  Sum_probs=57.5

Q ss_pred             CCCeEEEecCCchHHHHHHHHHCCCCeEEEeeh-HHHHHhCCC-CCCeeEEEecCCC-CCCc--ccEEEeec
Q 034578           23 NIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDL-QHVIATAPT-HEGVSHVGGDMFD-AIPN--ADAVFMKV   89 (90)
Q Consensus        23 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~-~~rv~~~~~d~~~-~~p~--~D~i~l~~   89 (90)
                      +..+|||+|||+|.++..+++.+|..+++++|+ +.+++.+++ ..++.+..+|+.+ +++.  +|+|+...
T Consensus        85 ~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~  156 (269)
T 1p91_A           85 KATAVLDIGCGEGYYTHAFADALPEITTFGLDVSKVAIKAAAKRYPQVTFCVASSHRLPFSDTSMDAIIRIY  156 (269)
T ss_dssp             TCCEEEEETCTTSTTHHHHHHTCTTSEEEEEESCHHHHHHHHHHCTTSEEEECCTTSCSBCTTCEEEEEEES
T ss_pred             CCCEEEEECCCCCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHhCCCcEEEEcchhhCCCCCCceeEEEEeC
Confidence            567999999999999999999998899999999 999998876 4678999999876 4443  89998753

>3lpm_A Putative methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; 2.40A {Listeria monocytogenes}

Probab=99.23  E-value=1.1e-11  Score=80.99  Aligned_cols=67  Identities=16%  Similarity=0.272  Sum_probs=56.7

Q ss_pred             CC-CCCeEEEecCCchHHHHHHHHHCCCCeEEEeeh-HHHHHhCCC-------CCCeeEEEecCCCC---CC-c-ccEEE
Q 034578           21 FN-NIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDL-QHVIATAPT-------HEGVSHVGGDMFDA---IP-N-ADAVF   86 (90)
Q Consensus        21 ~~-~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~-------~~rv~~~~~d~~~~---~p-~-~D~i~   86 (90)
                      .. +..+|||+|||+|.++..++++.+. +++++|+ |.+++.|++       .+|++++.+|+.+.   ++ . +|+|+
T Consensus        46 ~~~~~~~vLDlG~G~G~~~~~la~~~~~-~v~gvDi~~~~~~~a~~n~~~~~~~~~v~~~~~D~~~~~~~~~~~~fD~Ii  124 (259)
T 3lpm_A           46 LPIRKGKIIDLCSGNGIIPLLLSTRTKA-KIVGVEIQERLADMAKRSVAYNQLEDQIEIIEYDLKKITDLIPKERADIVT  124 (259)
T ss_dssp             CCSSCCEEEETTCTTTHHHHHHHTTCCC-EEEEECCSHHHHHHHHHHHHHTTCTTTEEEECSCGGGGGGTSCTTCEEEEE
T ss_pred             CCCCCCEEEEcCCchhHHHHHHHHhcCC-cEEEEECCHHHHHHHHHHHHHCCCcccEEEEECcHHHhhhhhccCCccEEE
Confidence            45 6789999999999999999999776 9999999 999988875       25799999999872   32 3 99999


Q ss_pred             ee
Q 034578           87 MK   88 (90)
Q Consensus        87 l~   88 (90)
                      ++
T Consensus       125 ~n  126 (259)
T 3lpm_A          125 CN  126 (259)
T ss_dssp             EC
T ss_pred             EC
Confidence            84

>3ftd_A Dimethyladenosine transferase; KSGA, rossmann-like fold, RNA methyltransferase, mtase, anti resistance, methyltransferase, RNA-binding; 1.44A {Aquifex aeolicus} PDB: 3ftc_A 3fte_A 3ftf_A* 3r9x_B*

Probab=99.23  E-value=3.7e-11  Score=78.94  Aligned_cols=80  Identities=16%  Similarity=0.277  Sum_probs=63.2

Q ss_pred             hhhHHHHHhhcccCCCCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeeh-HHHHHhCCCC--CCeeEEEecCCC-CCCc
Q 034578            6 KITMKAFVSHYKVDGFNNIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDL-QHVIATAPTH--EGVSHVGGDMFD-AIPN   81 (90)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~--~rv~~~~~d~~~-~~p~   81 (90)
                      ..+.+.+++.++   ..+..+|||+|||+|.++..++++ +..+++++|+ +.+++.++++  .+++++.+|+.+ +++.
T Consensus        17 ~~i~~~iv~~~~---~~~~~~VLDiG~G~G~lt~~L~~~-~~~~v~avEid~~~~~~~~~~~~~~v~~i~~D~~~~~~~~   92 (249)
T 3ftd_A           17 EGVLKKIAEELN---IEEGNTVVEVGGGTGNLTKVLLQH-PLKKLYVIELDREMVENLKSIGDERLEVINEDASKFPFCS   92 (249)
T ss_dssp             HHHHHHHHHHTT---CCTTCEEEEEESCHHHHHHHHTTS-CCSEEEEECCCHHHHHHHTTSCCTTEEEECSCTTTCCGGG
T ss_pred             HHHHHHHHHhcC---CCCcCEEEEEcCchHHHHHHHHHc-CCCeEEEEECCHHHHHHHHhccCCCeEEEEcchhhCChhH
Confidence            346677888777   556789999999999999999987 5688999999 9999988764  679999999988 5553


Q ss_pred             -c-cEEEeec
Q 034578           82 -A-DAVFMKV   89 (90)
Q Consensus        82 -~-D~i~l~~   89 (90)
                       . +..++++
T Consensus        93 ~~~~~~vv~N  102 (249)
T 3ftd_A           93 LGKELKVVGN  102 (249)
T ss_dssp             SCSSEEEEEE
T ss_pred             ccCCcEEEEE
Confidence             1 3445443

>2bm8_A Cephalosporin hydroxylase CMCI; cephamycin biosynthesis; 2.5A {Streptomyces clavuligerus} SCOP: c.66.1.50 PDB: 2bm9_A* 2br5_A* 2br4_A* 2br3_A*

Probab=99.23  E-value=1.4e-11  Score=80.11  Aligned_cols=66  Identities=20%  Similarity=0.189  Sum_probs=55.9

Q ss_pred             CCCeEEEecCCchHHHHHHHHH----CCCCeEEEeeh-HHHHHhCCC-CCCeeEEEecCCCC--C---C--cccEEEee
Q 034578           23 NIRSMVDVGGGTGTVLAEIVKS----YPHIKGINFDL-QHVIATAPT-HEGVSHVGGDMFDA--I---P--NADAVFMK   88 (90)
Q Consensus        23 ~~~~vlDvG~G~G~~~~~l~~~----~p~~~~~~~D~-p~~~~~a~~-~~rv~~~~~d~~~~--~---p--~~D~i~l~   88 (90)
                      +..+|||||||+|..+..+++.    .|..+++++|+ |.+++.|+. .++++++.+|..+.  +   +  .+|+|++.
T Consensus        81 ~~~~VLDiG~GtG~~t~~la~~~~~~~~~~~V~gvD~s~~~l~~a~~~~~~v~~~~gD~~~~~~l~~~~~~~fD~I~~d  159 (236)
T 2bm8_A           81 RPRTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQIPASDMENITLHQGDCSDLTTFEHLREMAHPLIFID  159 (236)
T ss_dssp             CCSEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCTTCCCCGGGCTTEEEEECCSSCSGGGGGGSSSCSSEEEEE
T ss_pred             CCCEEEEEeCCCCHHHHHHHHhhhhcCCCCEEEEEeCChHHHHHHhccCCceEEEECcchhHHHHHhhccCCCCEEEEC
Confidence            3579999999999999999998    78999999999 999888764 47899999999873  2   2  38999864

>2plw_A Ribosomal RNA methyltransferase, putative; malaria, SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Plasmodium falciparum}

Probab=99.23  E-value=6.5e-11  Score=74.13  Aligned_cols=63  Identities=16%  Similarity=0.218  Sum_probs=49.3

Q ss_pred             HHHHHhhcccCCCCCCCeEEEecCCchHHHHHHHHHCC--CCeEEEeehHHHHHhCCCCCCeeEEEecCCC
Q 034578            9 MKAFVSHYKVDGFNNIRSMVDVGGGTGTVLAEIVKSYP--HIKGINFDLQHVIATAPTHEGVSHVGGDMFD   77 (90)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p--~~~~~~~D~p~~~~~a~~~~rv~~~~~d~~~   77 (90)
                      ...+.+.+..  +.+..+|||+|||+|.++..+++++|  ..+++++|+.++    ...++++++.+|+.+
T Consensus        10 l~~~~~~~~~--~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~v~gvD~s~~----~~~~~v~~~~~d~~~   74 (201)
T 2plw_A           10 LIELDNKYLF--LKKNKIILDIGCYPGSWCQVILERTKNYKNKIIGIDKKIM----DPIPNVYFIQGEIGK   74 (201)
T ss_dssp             HHHHHHHHCC--CCTTEEEEEESCTTCHHHHHHHHHTTTSCEEEEEEESSCC----CCCTTCEEEECCTTT
T ss_pred             HHHHHHHcCC--CCCCCEEEEeCCCCCHHHHHHHHHcCCCCceEEEEeCCcc----CCCCCceEEEccccc
Confidence            3445666652  45667999999999999999999998  789999998332    124679999999987

>1qam_A ERMC' methyltransferase; rRNA methyltransferase ERMC', cofactor analogs; 2.20A {Bacillus subtilis} SCOP: c.66.1.24 PDB: 1qan_A* 1qao_A* 1qaq_A* 2erc_A

Probab=99.23  E-value=3.2e-11  Score=78.75  Aligned_cols=71  Identities=15%  Similarity=0.390  Sum_probs=58.7

Q ss_pred             hhhhHHHHHhhcccCCCCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeeh-HHHHHhCCC----CCCeeEEEecCCC-C
Q 034578            5 TKITMKAFVSHYKVDGFNNIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDL-QHVIATAPT----HEGVSHVGGDMFD-A   78 (90)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~----~~rv~~~~~d~~~-~   78 (90)
                      +....+.+++.++   ..+..+|||+|||+|.++..++++.  .+++++|+ +.+++.+++    .++++++.+|+.+ +
T Consensus        15 d~~~~~~i~~~~~---~~~~~~VLDiG~G~G~lt~~l~~~~--~~v~~vD~~~~~~~~a~~~~~~~~~v~~~~~D~~~~~   89 (244)
T 1qam_A           15 SKHNIDKIMTNIR---LNEHDNIFEIGSGKGHFTLELVQRC--NFVTAIEIDHKLCKTTENKLVDHDNFQVLNKDILQFK   89 (244)
T ss_dssp             CHHHHHHHHTTCC---CCTTCEEEEECCTTSHHHHHHHHHS--SEEEEECSCHHHHHHHHHHTTTCCSEEEECCCGGGCC
T ss_pred             CHHHHHHHHHhCC---CCCCCEEEEEeCCchHHHHHHHHcC--CeEEEEECCHHHHHHHHHhhccCCCeEEEEChHHhCC
Confidence            3456677777776   5567899999999999999999986  78999999 999887764    3689999999987 5


Q ss_pred             CC
Q 034578           79 IP   80 (90)
Q Consensus        79 ~p   80 (90)
                      ++
T Consensus        90 ~~   91 (244)
T 1qam_A           90 FP   91 (244)
T ss_dssp             CC
T ss_pred             cc
Confidence            55

>2h1r_A Dimethyladenosine transferase, putative; SGC toronto dimethyladenosine transferase, structural genomics, structural genomics consortium; 1.89A {Plasmodium falciparum}

Probab=99.23  E-value=7.8e-12  Score=83.87  Aligned_cols=78  Identities=17%  Similarity=0.293  Sum_probs=59.7

Q ss_pred             hhhHHHHHhhcccCCCCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeeh-HHHHHhCCC------CCCeeEEEecCCC-
Q 034578            6 KITMKAFVSHYKVDGFNNIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDL-QHVIATAPT------HEGVSHVGGDMFD-   77 (90)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~------~~rv~~~~~d~~~-   77 (90)
                      ....+.+++.++   ..+..+|||+|||+|.++..++++  ..+++++|+ +.+++.+++      .++++++.+|+.+ 
T Consensus        28 ~~i~~~i~~~~~---~~~~~~VLDiG~G~G~lt~~La~~--~~~v~~vDi~~~~~~~a~~~~~~~~~~~v~~~~~D~~~~  102 (299)
T 2h1r_A           28 PGILDKIIYAAK---IKSSDIVLEIGCGTGNLTVKLLPL--AKKVITIDIDSRMISEVKKRCLYEGYNNLEVYEGDAIKT  102 (299)
T ss_dssp             HHHHHHHHHHHC---CCTTCEEEEECCTTSTTHHHHTTT--SSEEEEECSCHHHHHHHHHHHHHTTCCCEEC----CCSS
T ss_pred             HHHHHHHHHhcC---CCCcCEEEEEcCcCcHHHHHHHhc--CCEEEEEECCHHHHHHHHHHHHHcCCCceEEEECchhhC
Confidence            345677777776   556789999999999999999987  468999999 999887764      2689999999988 


Q ss_pred             CCCcccEEEee
Q 034578           78 AIPNADAVFMK   88 (90)
Q Consensus        78 ~~p~~D~i~l~   88 (90)
                      +++.+|+|+.+
T Consensus       103 ~~~~~D~Vv~n  113 (299)
T 2h1r_A          103 VFPKFDVCTAN  113 (299)
T ss_dssp             CCCCCSEEEEE
T ss_pred             CcccCCEEEEc
Confidence            55669999874

>2fyt_A Protein arginine N-methyltransferase 3; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.6 PDB: 3smq_A* 1f3l_A*

Probab=99.23  E-value=3.1e-11  Score=82.13  Aligned_cols=76  Identities=17%  Similarity=0.271  Sum_probs=59.5

Q ss_pred             HHHHhhcccCCCCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeehHHHHHhCCC-------CCCeeEEEecCCC-CCC-
Q 034578           10 KAFVSHYKVDGFNNIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDLQHVIATAPT-------HEGVSHVGGDMFD-AIP-   80 (90)
Q Consensus        10 ~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~p~~~~~a~~-------~~rv~~~~~d~~~-~~p-   80 (90)
                      +.+.+...   ..+..+|||||||+|.++..++++ +..+++++|+.++++.|++       .++++++.+|+.+ ++| 
T Consensus        54 ~~i~~~~~---~~~~~~VLDiGcGtG~ls~~la~~-g~~~v~gvD~s~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~  129 (340)
T 2fyt_A           54 DFIYQNPH---IFKDKVVLDVGCGTGILSMFAAKA-GAKKVLGVDQSEILYQAMDIIRLNKLEDTITLIKGKIEEVHLPV  129 (340)
T ss_dssp             HHHHHCGG---GTTTCEEEEETCTTSHHHHHHHHT-TCSEEEEEESSTHHHHHHHHHHHTTCTTTEEEEESCTTTSCCSC
T ss_pred             HHHHhhhh---hcCCCEEEEeeccCcHHHHHHHHc-CCCEEEEEChHHHHHHHHHHHHHcCCCCcEEEEEeeHHHhcCCC
Confidence            45555544   456689999999999999999987 4568999999338887765       2789999999987 566 


Q ss_pred             c-ccEEEeec
Q 034578           81 N-ADAVFMKV   89 (90)
Q Consensus        81 ~-~D~i~l~~   89 (90)
                      + +|+|+..+
T Consensus       130 ~~~D~Ivs~~  139 (340)
T 2fyt_A          130 EKVDVIISEW  139 (340)
T ss_dssp             SCEEEEEECC
T ss_pred             CcEEEEEEcC
Confidence            3 99999654

>3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117, NESG, structural genomics, PSI-2, protein structure initiative; 2.25A {Corynebacterium glutamicum}

Probab=99.23  E-value=1.5e-11  Score=79.30  Aligned_cols=64  Identities=14%  Similarity=0.109  Sum_probs=54.2

Q ss_pred             CeEEEecCCchHHHHHHHHHCC-CCeEEEeeh-HHHHHhCCC-------C-CCeeEEEecCCC---CC-Cc-ccEEEee
Q 034578           25 RSMVDVGGGTGTVLAEIVKSYP-HIKGINFDL-QHVIATAPT-------H-EGVSHVGGDMFD---AI-PN-ADAVFMK   88 (90)
Q Consensus        25 ~~vlDvG~G~G~~~~~l~~~~p-~~~~~~~D~-p~~~~~a~~-------~-~rv~~~~~d~~~---~~-p~-~D~i~l~   88 (90)
                      .+|||||||+|..+..+++..| +.+++++|+ |.+++.|++       . +|++++.+|..+   .+ +. ||+|++.
T Consensus        58 ~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~~i~~~~gda~~~l~~~~~~~fD~V~~d  136 (221)
T 3dr5_A           58 TGAIAITPAAGLVGLYILNGLADNTTLTCIDPESEHQRQAKALFREAGYSPSRVRFLLSRPLDVMSRLANDSYQLVFGQ  136 (221)
T ss_dssp             CEEEEESTTHHHHHHHHHHHSCTTSEEEEECSCHHHHHHHHHHHHHTTCCGGGEEEECSCHHHHGGGSCTTCEEEEEEC
T ss_pred             CCEEEEcCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCcCcEEEEEcCHHHHHHHhcCCCcCeEEEc
Confidence            4999999999999999999975 899999999 999988865       2 589999999876   24 23 9999874

>3lcc_A Putative methyl chloride transferase; halide methyltransferase; HET: SAH; 1.80A {Arabidopsis thaliana}

Probab=99.23  E-value=1.5e-11  Score=78.95  Aligned_cols=64  Identities=25%  Similarity=0.319  Sum_probs=53.4

Q ss_pred             CCeEEEecCCchHHHHHHHHHCCCCeEEEeeh-HHHHHhCCCC-------CCeeEEEecCCCCCC--cccEEEeec
Q 034578           24 IRSMVDVGGGTGTVLAEIVKSYPHIKGINFDL-QHVIATAPTH-------EGVSHVGGDMFDAIP--NADAVFMKV   89 (90)
Q Consensus        24 ~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~-------~rv~~~~~d~~~~~p--~~D~i~l~~   89 (90)
                      ..+|||+|||+|.++..+++  +..+++++|+ |.+++.+++.       .+++++.+|+.+..+  .+|+|+++.
T Consensus        67 ~~~vLDiGcG~G~~~~~l~~--~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~fD~v~~~~  140 (235)
T 3lcc_A           67 LGRALVPGCGGGHDVVAMAS--PERFVVGLDISESALAKANETYGSSPKAEYFSFVKEDVFTWRPTELFDLIFDYV  140 (235)
T ss_dssp             CEEEEEETCTTCHHHHHHCB--TTEEEEEECSCHHHHHHHHHHHTTSGGGGGEEEECCCTTTCCCSSCEEEEEEES
T ss_pred             CCCEEEeCCCCCHHHHHHHh--CCCeEEEEECCHHHHHHHHHHhhccCCCcceEEEECchhcCCCCCCeeEEEECh
Confidence            35999999999999999976  5788999999 9999887651       469999999988433  399999765

>1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural genomics, beta barrel, rossmann fold, tetramer; HET: SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP: c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A*

Probab=99.22  E-value=8.5e-12  Score=76.96  Aligned_cols=80  Identities=23%  Similarity=0.247  Sum_probs=64.2

Q ss_pred             hhhhHHHHHhhcccCCCCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeeh-HHHHHhCCCC-------CCeeEEEecCC
Q 034578            5 TKITMKAFVSHYKVDGFNNIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDL-QHVIATAPTH-------EGVSHVGGDMF   76 (90)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~-------~rv~~~~~d~~   76 (90)
                      +..+...+++.+.   ..+..+|||+|||+|.++..+++..  .+++++|+ |.+++.++++       +++++..+|+.
T Consensus        18 ~~~~~~~~~~~~~---~~~~~~vldiG~G~G~~~~~l~~~~--~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~   92 (192)
T 1l3i_A           18 AMEVRCLIMCLAE---PGKNDVAVDVGCGTGGVTLELAGRV--RRVYAIDRNPEAISTTEMNLQRHGLGDNVTLMEGDAP   92 (192)
T ss_dssp             CHHHHHHHHHHHC---CCTTCEEEEESCTTSHHHHHHHTTS--SEEEEEESCHHHHHHHHHHHHHTTCCTTEEEEESCHH
T ss_pred             hHHHHHHHHHhcC---CCCCCEEEEECCCCCHHHHHHHHhc--CEEEEEECCHHHHHHHHHHHHHcCCCcceEEEecCHH
Confidence            3455666777666   5667899999999999999999987  78999999 9998887651       68999999987


Q ss_pred             CCC---CcccEEEeec
Q 034578           77 DAI---PNADAVFMKV   89 (90)
Q Consensus        77 ~~~---p~~D~i~l~~   89 (90)
                      +.+   +.+|+|++..
T Consensus        93 ~~~~~~~~~D~v~~~~  108 (192)
T 1l3i_A           93 EALCKIPDIDIAVVGG  108 (192)
T ss_dssp             HHHTTSCCEEEEEESC
T ss_pred             HhcccCCCCCEEEECC
Confidence            633   3499999764

>3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genom JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440}

Probab=99.22  E-value=9.8e-12  Score=78.58  Aligned_cols=76  Identities=14%  Similarity=0.142  Sum_probs=60.7

Q ss_pred             HHHHhhcccCCCCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeeh-HHHHHhCCCCCCeeEEEecCCCC-----C-Cc-
Q 034578           10 KAFVSHYKVDGFNNIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDL-QHVIATAPTHEGVSHVGGDMFDA-----I-PN-   81 (90)
Q Consensus        10 ~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~~rv~~~~~d~~~~-----~-p~-   81 (90)
                      ..+++.+.   ..+..+|||+|||+|.++..+++.  ..+++++|+ +.+++.+++..++++..+|+.+.     . .. 
T Consensus        42 ~~~~~~~~---~~~~~~vLdiG~G~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~  116 (227)
T 3e8s_A           42 QAILLAIL---GRQPERVLDLGCGEGWLLRALADR--GIEAVGVDGDRTLVDAARAAGAGEVHLASYAQLAEAKVPVGKD  116 (227)
T ss_dssp             HHHHHHHH---HTCCSEEEEETCTTCHHHHHHHTT--TCEEEEEESCHHHHHHHHHTCSSCEEECCHHHHHTTCSCCCCC
T ss_pred             HHHHHHhh---cCCCCEEEEeCCCCCHHHHHHHHC--CCEEEEEcCCHHHHHHHHHhcccccchhhHHhhcccccccCCC
Confidence            44556555   345689999999999999999998  668999999 99999998888888988887641     2 23 


Q ss_pred             ccEEEeecC
Q 034578           82 ADAVFMKVA   90 (90)
Q Consensus        82 ~D~i~l~~v   90 (90)
                      +|+|++.++
T Consensus       117 fD~v~~~~~  125 (227)
T 3e8s_A          117 YDLICANFA  125 (227)
T ss_dssp             EEEEEEESC
T ss_pred             ccEEEECch
Confidence            999998753

>3orh_A Guanidinoacetate N-methyltransferase; structura genomics, structural genomics consortium, SGC; HET: SAH; 1.86A {Homo sapiens} PDB: 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A*

Probab=99.22  E-value=4.9e-12  Score=82.04  Aligned_cols=77  Identities=14%  Similarity=0.149  Sum_probs=58.1

Q ss_pred             hhhHHHHHhhcccCCCCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeeh-HHHHHhCCC-----CCCeeEEEecCCC--
Q 034578            6 KITMKAFVSHYKVDGFNNIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDL-QHVIATAPT-----HEGVSHVGGDMFD--   77 (90)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~-----~~rv~~~~~d~~~--   77 (90)
                      ..+.+.+++...    .+..+|||||||+|..+..+++..| .+++++|+ |.+++.|++     ..+++++.+|+.+  
T Consensus        47 ~~~m~~~a~~~~----~~G~rVLdiG~G~G~~~~~~~~~~~-~~v~~id~~~~~~~~a~~~~~~~~~~~~~~~~~a~~~~  121 (236)
T 3orh_A           47 TPYMHALAAAAS----SKGGRVLEVGFGMAIAASKVQEAPI-DEHWIIECNDGVFQRLRDWAPRQTHKVIPLKGLWEDVA  121 (236)
T ss_dssp             HHHHHHHHHHHT----TTCEEEEEECCTTSHHHHHHTTSCE-EEEEEEECCHHHHHHHHHHGGGCSSEEEEEESCHHHHG
T ss_pred             HHHHHHHHHhhc----cCCCeEEEECCCccHHHHHHHHhCC-cEEEEEeCCHHHHHHHHHHHhhCCCceEEEeehHHhhc
Confidence            334455555444    3567999999999999999998776 47999999 999998875     3568888888754  


Q ss_pred             -CCCc--ccEEEe
Q 034578           78 -AIPN--ADAVFM   87 (90)
Q Consensus        78 -~~p~--~D~i~l   87 (90)
                       +++.  ||.|++
T Consensus       122 ~~~~~~~FD~i~~  134 (236)
T 3orh_A          122 PTLPDGHFDGILY  134 (236)
T ss_dssp             GGSCTTCEEEEEE
T ss_pred             ccccccCCceEEE
Confidence             3443  898874

>3sm3_A SAM-dependent methyltransferases; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics; 2.20A {Methanosarcina mazei}

Probab=99.22  E-value=3.7e-11  Score=76.34  Aligned_cols=66  Identities=17%  Similarity=0.217  Sum_probs=54.8

Q ss_pred             CCCeEEEecCCchHHHHHHHHHCCCCeEEEeeh-HHHHHhCCC-----------CCCeeEEEecCCC-CCCc--ccEEEe
Q 034578           23 NIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDL-QHVIATAPT-----------HEGVSHVGGDMFD-AIPN--ADAVFM   87 (90)
Q Consensus        23 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~-----------~~rv~~~~~d~~~-~~p~--~D~i~l   87 (90)
                      +..+|||+|||+|.++..+++.  ..+++++|+ |.+++.+++           ..++++..+|+.+ +++.  +|+|++
T Consensus        30 ~~~~vLdiG~G~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~  107 (235)
T 3sm3_A           30 EDDEILDIGCGSGKISLELASK--GYSVTGIDINSEAIRLAETAARSPGLNQKTGGKAEFKVENASSLSFHDSSFDFAVM  107 (235)
T ss_dssp             TTCEEEEETCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHHTTCCSCCSSSSCEEEEEECCTTSCCSCTTCEEEEEE
T ss_pred             CCCeEEEECCCCCHHHHHHHhC--CCeEEEEECCHHHHHHHHHHHHhcCCccccCcceEEEEecccccCCCCCceeEEEE
Confidence            5679999999999999999998  679999999 998887764           1368999999987 4443  999998


Q ss_pred             ecC
Q 034578           88 KVA   90 (90)
Q Consensus        88 ~~v   90 (90)
                      ..+
T Consensus       108 ~~~  110 (235)
T 3sm3_A          108 QAF  110 (235)
T ss_dssp             ESC
T ss_pred             cch
Confidence            753

>3q7e_A Protein arginine N-methyltransferase 1; HET: SAH; 2.20A {Rattus norvegicus} PDB: 1orh_A* 1ori_A* 1or8_A*

Probab=99.22  E-value=1.9e-11  Score=83.36  Aligned_cols=67  Identities=21%  Similarity=0.282  Sum_probs=55.1

Q ss_pred             CCCCeEEEecCCchHHHHHHHHHCCCCeEEEeehHHHHHhCCC-------CCCeeEEEecCCC-CCC-c-ccEEEeec
Q 034578           22 NNIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDLQHVIATAPT-------HEGVSHVGGDMFD-AIP-N-ADAVFMKV   89 (90)
Q Consensus        22 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~p~~~~~a~~-------~~rv~~~~~d~~~-~~p-~-~D~i~l~~   89 (90)
                      .+..+|||||||+|.++..++++ +..+++++|+.++++.|++       .++++++.+|+.+ ++| + +|+|+..+
T Consensus        65 ~~~~~VLDvGcG~G~~~~~la~~-g~~~v~gvD~s~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~Iis~~  141 (349)
T 3q7e_A           65 FKDKVVLDVGSGTGILCMFAAKA-GARKVIGIECSSISDYAVKIVKANKLDHVVTIIKGKVEEVELPVEKVDIIISEW  141 (349)
T ss_dssp             HTTCEEEEESCTTSHHHHHHHHT-TCSEEEEEECSTHHHHHHHHHHHTTCTTTEEEEESCTTTCCCSSSCEEEEEECC
T ss_pred             CCCCEEEEEeccchHHHHHHHHC-CCCEEEEECcHHHHHHHHHHHHHcCCCCcEEEEECcHHHccCCCCceEEEEEcc
Confidence            35679999999999999999997 6679999999447777764       2569999999988 566 3 99999753

>3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana}

Probab=99.22  E-value=1.9e-11  Score=91.59  Aligned_cols=80  Identities=16%  Similarity=0.246  Sum_probs=64.2

Q ss_pred             hHHHHHhhcccCCCCCCCeEEEecCCchHHHHHHHHHC-CCCeEEEeeh-HHHHHhCCC------------CCCeeEEEe
Q 034578            8 TMKAFVSHYKVDGFNNIRSMVDVGGGTGTVLAEIVKSY-PHIKGINFDL-QHVIATAPT------------HEGVSHVGG   73 (90)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~-p~~~~~~~D~-p~~~~~a~~------------~~rv~~~~~   73 (90)
                      ..+.+++.+.   ..+..+|||||||+|.++..+++.. |..+++++|+ +.+++.|++            ..+++++.+
T Consensus       709 Rle~LLelL~---~~~g~rVLDVGCGTG~lai~LAr~g~p~a~VtGVDIS~emLe~AReRLa~~lnAkr~gl~nVefiqG  785 (950)
T 3htx_A          709 RVEYALKHIR---ESSASTLVDFGCGSGSLLDSLLDYPTSLQTIIGVDISPKGLARAAKMLHVKLNKEACNVKSATLYDG  785 (950)
T ss_dssp             HHHHHHHHHH---HSCCSEEEEETCSSSHHHHHHTSSCCCCCEEEEEESCHHHHHHHHHHHHHHTTTTCSSCSEEEEEES
T ss_pred             HHHHHHHHhc---ccCCCEEEEECCCCCHHHHHHHHhCCCCCeEEEEECCHHHHHHHHHHhhhccchhhcCCCceEEEEC
Confidence            3455566665   3457899999999999999999998 6679999999 999998854            257999999


Q ss_pred             cCCC-CCC--cccEEEeecC
Q 034578           74 DMFD-AIP--NADAVFMKVA   90 (90)
Q Consensus        74 d~~~-~~p--~~D~i~l~~v   90 (90)
                      |+.+ +.+  .||+|++..+
T Consensus       786 Da~dLp~~d~sFDlVV~~eV  805 (950)
T 3htx_A          786 SILEFDSRLHDVDIGTCLEV  805 (950)
T ss_dssp             CTTSCCTTSCSCCEEEEESC
T ss_pred             chHhCCcccCCeeEEEEeCc
Confidence            9987 443  3999998653

>1m6y_A S-adenosyl-methyltransferase MRAW; SAM-dependent methyltransferase fold, protein-cofactor product complex, structural genomics, PSI; HET: SAH; 1.90A {Thermotoga maritima} SCOP: a.60.13.1 c.66.1.23 PDB: 1n2x_A*

Probab=99.22  E-value=2.1e-11  Score=82.19  Aligned_cols=79  Identities=18%  Similarity=0.302  Sum_probs=64.8

Q ss_pred             hhHHHHHhhcccCCCCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeeh-HHHHHhCCCC-----CCeeEEEecCCC-C-
Q 034578            7 ITMKAFVSHYKVDGFNNIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDL-QHVIATAPTH-----EGVSHVGGDMFD-A-   78 (90)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~-----~rv~~~~~d~~~-~-   78 (90)
                      .+.+.+++.+.   ..+..++||+|||+|.++..+++++|..+++++|+ |.+++.|+++     +|++++.+|+.+ + 
T Consensus        13 vLl~e~l~~L~---~~~g~~vLD~g~G~G~~s~~la~~~~~~~VigvD~d~~al~~A~~~~~~~g~~v~~v~~d~~~l~~   89 (301)
T 1m6y_A           13 VMVREVIEFLK---PEDEKIILDCTVGEGGHSRAILEHCPGCRIIGIDVDSEVLRIAEEKLKEFSDRVSLFKVSYREADF   89 (301)
T ss_dssp             TTHHHHHHHHC---CCTTCEEEETTCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTGGGTTTEEEEECCGGGHHH
T ss_pred             HHHHHHHHhcC---CCCCCEEEEEeCCcCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEECCHHHHHH
Confidence            45667777776   55678999999999999999999999899999999 9999888652     689999999865 2 


Q ss_pred             -C-----CcccEEEee
Q 034578           79 -I-----PNADAVFMK   88 (90)
Q Consensus        79 -~-----p~~D~i~l~   88 (90)
                       +     ..+|.|++.
T Consensus        90 ~l~~~g~~~~D~Vl~D  105 (301)
T 1m6y_A           90 LLKTLGIEKVDGILMD  105 (301)
T ss_dssp             HHHHTTCSCEEEEEEE
T ss_pred             HHHhcCCCCCCEEEEc
Confidence             1     248998863

>3p9n_A Possible methyltransferase (methylase); RV2966C, adoMet binding, RNA methylase, RSMD, SAM-fold, RNA methyltransferase; 1.90A {Mycobacterium tuberculosis}

Probab=99.22  E-value=1.1e-11  Score=77.35  Aligned_cols=82  Identities=12%  Similarity=0.075  Sum_probs=60.2

Q ss_pred             hhhHHHHHhhcccCCCCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeeh-HHHHHhCCCC------CCeeEEEecCCCC
Q 034578            6 KITMKAFVSHYKVDGFNNIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDL-QHVIATAPTH------EGVSHVGGDMFDA   78 (90)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~------~rv~~~~~d~~~~   78 (90)
                      ..+.+.+++.+......+..+|||+|||+|.++..++++ +..+++++|+ |.+++.++++      ++++++.+|+.+.
T Consensus        27 ~~~~~~l~~~l~~~~~~~~~~vLDlgcG~G~~~~~~~~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~  105 (189)
T 3p9n_A           27 DRVRESLFNIVTARRDLTGLAVLDLYAGSGALGLEALSR-GAASVLFVESDQRSAAVIARNIEALGLSGATLRRGAVAAV  105 (189)
T ss_dssp             HHHHHHHHHHHHHHSCCTTCEEEEETCTTCHHHHHHHHT-TCSEEEEEECCHHHHHHHHHHHHHHTCSCEEEEESCHHHH
T ss_pred             HHHHHHHHHHHHhccCCCCCEEEEeCCCcCHHHHHHHHC-CCCeEEEEECCHHHHHHHHHHHHHcCCCceEEEEccHHHH
Confidence            334445544443100135679999999999999988774 5678999999 9999988762      5899999998762


Q ss_pred             ---C-C-cccEEEee
Q 034578           79 ---I-P-NADAVFMK   88 (90)
Q Consensus        79 ---~-p-~~D~i~l~   88 (90)
                         + + .+|+|++.
T Consensus       106 ~~~~~~~~fD~i~~~  120 (189)
T 3p9n_A          106 VAAGTTSPVDLVLAD  120 (189)
T ss_dssp             HHHCCSSCCSEEEEC
T ss_pred             HhhccCCCccEEEEC
Confidence               3 2 39999975

>3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus}

Probab=99.22  E-value=3e-12  Score=78.41  Aligned_cols=73  Identities=15%  Similarity=0.221  Sum_probs=58.8

Q ss_pred             HHHhhcccCCCCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeeh-HHHHHhCCC-CCCeeEEEecCCCCCC--cccEEE
Q 034578           11 AFVSHYKVDGFNNIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDL-QHVIATAPT-HEGVSHVGGDMFDAIP--NADAVF   86 (90)
Q Consensus        11 ~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~-~~rv~~~~~d~~~~~p--~~D~i~   86 (90)
                      .+++.++   ..+..+|||+|||+|.++..+++...  +++++|+ +.+++.+++ .+++++..+|  .+++  .+|+|+
T Consensus         8 ~~~~~~~---~~~~~~vLDiG~G~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~~~~v~~~~~d--~~~~~~~~D~v~   80 (170)
T 3i9f_A            8 EYLPNIF---EGKKGVIVDYGCGNGFYCKYLLEFAT--KLYCIDINVIALKEVKEKFDSVITLSDP--KEIPDNSVDFIL   80 (170)
T ss_dssp             TTHHHHH---SSCCEEEEEETCTTCTTHHHHHTTEE--EEEEECSCHHHHHHHHHHCTTSEEESSG--GGSCTTCEEEEE
T ss_pred             HHHHhcC---cCCCCeEEEECCCCCHHHHHHHhhcC--eEEEEeCCHHHHHHHHHhCCCcEEEeCC--CCCCCCceEEEE
Confidence            3445555   45667999999999999999999874  8999999 999988876 5789999999  3343  399999


Q ss_pred             eecC
Q 034578           87 MKVA   90 (90)
Q Consensus        87 l~~v   90 (90)
                      +.++
T Consensus        81 ~~~~   84 (170)
T 3i9f_A           81 FANS   84 (170)
T ss_dssp             EESC
T ss_pred             Eccc
Confidence            8753

>1dl5_A Protein-L-isoaspartate O-methyltransferase; isoaspartyl residues, protein repair, deamidation, post-translational modification; HET: SAH; 1.80A {Thermotoga maritima} SCOP: c.66.1.7 d.197.1.1

Probab=99.21  E-value=2.5e-11  Score=81.63  Aligned_cols=80  Identities=23%  Similarity=0.363  Sum_probs=64.8

Q ss_pred             hhHHHHHhhcccCCCCCCCeEEEecCCchHHHHHHHHHCC-CCeEEEeeh-HHHHHhCCCC------CCeeEEEecCCCC
Q 034578            7 ITMKAFVSHYKVDGFNNIRSMVDVGGGTGTVLAEIVKSYP-HIKGINFDL-QHVIATAPTH------EGVSHVGGDMFDA   78 (90)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p-~~~~~~~D~-p~~~~~a~~~------~rv~~~~~d~~~~   78 (90)
                      .....+++.+.   ..+..+|||+|||+|.++..+++..+ ..+++++|+ |.+++.++++      .++++..+|+.+.
T Consensus        62 ~~~~~l~~~l~---~~~~~~VLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~g~~~v~~~~~d~~~~  138 (317)
T 1dl5_A           62 SLMALFMEWVG---LDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLGIENVIFVCGDGYYG  138 (317)
T ss_dssp             HHHHHHHHHTT---CCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGC
T ss_pred             HHHHHHHHhcC---CCCcCEEEEecCCchHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCCCeEEEECChhhc
Confidence            45666777676   56678999999999999999999987 488999999 9999888752      5699999999873


Q ss_pred             CC---cccEEEeec
Q 034578           79 IP---NADAVFMKV   89 (90)
Q Consensus        79 ~p---~~D~i~l~~   89 (90)
                      ++   .+|+|++..
T Consensus       139 ~~~~~~fD~Iv~~~  152 (317)
T 1dl5_A          139 VPEFSPYDVIFVTV  152 (317)
T ss_dssp             CGGGCCEEEEEECS
T ss_pred             cccCCCeEEEEEcC
Confidence            32   389998753

>3uzu_A Ribosomal RNA small subunit methyltransferase A; ssgcid, seattle structural genomics center for infectio disease; 1.75A {Burkholderia pseudomallei}

Probab=99.21  E-value=9.1e-12  Score=83.17  Aligned_cols=72  Identities=17%  Similarity=0.245  Sum_probs=59.6

Q ss_pred             hhHHHHHhhcccCCCCCCCeEEEecCCchHHHHHHHHHCCC--CeEEEeeh-HHHHHhCCCC--CCeeEEEecCCC-CCC
Q 034578            7 ITMKAFVSHYKVDGFNNIRSMVDVGGGTGTVLAEIVKSYPH--IKGINFDL-QHVIATAPTH--EGVSHVGGDMFD-AIP   80 (90)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~--~~~~~~D~-p~~~~~a~~~--~rv~~~~~d~~~-~~p   80 (90)
                      .+.+.+++.+.   ..+..+|||||||+|.++..++++.+.  .+++++|+ +.+++.++++  ++++++.+|+++ +++
T Consensus        29 ~i~~~iv~~~~---~~~~~~VLEIG~G~G~lt~~La~~~~~~~~~V~avDid~~~l~~a~~~~~~~v~~i~~D~~~~~~~  105 (279)
T 3uzu_A           29 GVIDAIVAAIR---PERGERMVEIGPGLGALTGPVIARLATPGSPLHAVELDRDLIGRLEQRFGELLELHAGDALTFDFG  105 (279)
T ss_dssp             HHHHHHHHHHC---CCTTCEEEEECCTTSTTHHHHHHHHCBTTBCEEEEECCHHHHHHHHHHHGGGEEEEESCGGGCCGG
T ss_pred             HHHHHHHHhcC---CCCcCEEEEEccccHHHHHHHHHhCCCcCCeEEEEECCHHHHHHHHHhcCCCcEEEECChhcCChh
Confidence            45677777776   566789999999999999999998654  66999999 9999988764  789999999987 554


Q ss_pred             c
Q 034578           81 N   81 (90)
Q Consensus        81 ~   81 (90)
                      .
T Consensus       106 ~  106 (279)
T 3uzu_A          106 S  106 (279)
T ss_dssp             G
T ss_pred             H
Confidence            4

>3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase binding, liver cytosol, transferase-transferase inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus} SCOP: c.66.1.5 PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A* 2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A 1r74_A* 2azt_A*

Probab=99.21  E-value=1.3e-11  Score=81.36  Aligned_cols=77  Identities=14%  Similarity=0.093  Sum_probs=59.7

Q ss_pred             hhHHHHHhhcccCCCCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeeh-HHHHHhCCC----------CCCeeEEEecC
Q 034578            7 ITMKAFVSHYKVDGFNNIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDL-QHVIATAPT----------HEGVSHVGGDM   75 (90)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~----------~~rv~~~~~d~   75 (90)
                      ...+.+.+.++   ..+..+|||||||+|.++..++++.  .+++++|+ |.+++.+++          ..++.+..+|+
T Consensus        44 ~~~~~l~~~l~---~~~~~~vLDiGcG~G~~~~~l~~~~--~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~d~  118 (293)
T 3thr_A           44 EYKAWLLGLLR---QHGCHRVLDVACGTGVDSIMLVEEG--FSVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANW  118 (293)
T ss_dssp             HHHHHHHHHHH---HTTCCEEEETTCTTSHHHHHHHHTT--CEEEEEESCHHHHHHHHHHHHHTTTSHHHHTCEEEECCG
T ss_pred             HHHHHHHHHhc---ccCCCEEEEecCCCCHHHHHHHHCC--CeEEEEECCHHHHHHHHHhhhhcccccccceeeEeecCh
Confidence            34455555555   3456799999999999999999984  48999999 999988854          15788999998


Q ss_pred             CC-C---CC--cccEEEee
Q 034578           76 FD-A---IP--NADAVFMK   88 (90)
Q Consensus        76 ~~-~---~p--~~D~i~l~   88 (90)
                      .+ +   ++  .+|+|++.
T Consensus       119 ~~~~~~~~~~~~fD~V~~~  137 (293)
T 3thr_A          119 LTLDKDVPAGDGFDAVICL  137 (293)
T ss_dssp             GGHHHHSCCTTCEEEEEEC
T ss_pred             hhCccccccCCCeEEEEEc
Confidence            77 4   34  39999985

>2gpy_A O-methyltransferase; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; HET: MSE; 1.90A {Bacillus halodurans}

Probab=99.20  E-value=9.5e-12  Score=79.92  Aligned_cols=68  Identities=13%  Similarity=0.269  Sum_probs=57.4

Q ss_pred             CCCCeEEEecCCchHHHHHHHHHCCCCeEEEeeh-HHHHHhCCCC-------CCeeEEEecCCCC---C--C-cccEEEe
Q 034578           22 NNIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDL-QHVIATAPTH-------EGVSHVGGDMFDA---I--P-NADAVFM   87 (90)
Q Consensus        22 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~-------~rv~~~~~d~~~~---~--p-~~D~i~l   87 (90)
                      .+..+|||+|||+|.++..+++.+|..+++++|+ |.+++.++++       ++++++.+|+.+.   .  + .+|+|++
T Consensus        53 ~~~~~vLdiG~G~G~~~~~la~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~  132 (233)
T 2gpy_A           53 AAPARILEIGTAIGYSAIRMAQALPEATIVSIERDERRYEEAHKHVKALGLESRIELLFGDALQLGEKLELYPLFDVLFI  132 (233)
T ss_dssp             HCCSEEEEECCTTSHHHHHHHHHCTTCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCGGGSHHHHTTSCCEEEEEE
T ss_pred             cCCCEEEEecCCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECCHHHHHHhcccCCCccEEEE
Confidence            3467999999999999999999999999999999 9998888752       5799999999773   2  2 3999987


Q ss_pred             ec
Q 034578           88 KV   89 (90)
Q Consensus        88 ~~   89 (90)
                      ..
T Consensus       133 ~~  134 (233)
T 2gpy_A          133 DA  134 (233)
T ss_dssp             EG
T ss_pred             CC
Confidence            53

>1zx0_A Guanidinoacetate N-methyltransferase; structural genomics, structural genomics consortium; HET: SAH; 1.86A {Homo sapiens} PDB: 3orh_A* 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A*

Probab=99.20  E-value=8.9e-12  Score=80.27  Aligned_cols=64  Identities=14%  Similarity=0.158  Sum_probs=52.3

Q ss_pred             CCCeEEEecCCchHHHHHHHHHCCCCeEEEeeh-HHHHHhCCC-----CCCeeEEEecCCC---CCCc--ccEEEe
Q 034578           23 NIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDL-QHVIATAPT-----HEGVSHVGGDMFD---AIPN--ADAVFM   87 (90)
Q Consensus        23 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~-----~~rv~~~~~d~~~---~~p~--~D~i~l   87 (90)
                      +..+|||||||+|.++..+++..+ .+++++|+ |.+++.|++     ..+++++.+|+.+   +++.  +|+|++
T Consensus        60 ~~~~vLDiGcGtG~~~~~l~~~~~-~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~fD~V~~  134 (236)
T 1zx0_A           60 KGGRVLEVGFGMAIAASKVQEAPI-DEHWIIECNDGVFQRLRDWAPRQTHKVIPLKGLWEDVAPTLPDGHFDGILY  134 (236)
T ss_dssp             TCEEEEEECCTTSHHHHHHHTSCE-EEEEEEECCHHHHHHHHHHGGGCSSEEEEEESCHHHHGGGSCTTCEEEEEE
T ss_pred             CCCeEEEEeccCCHHHHHHHhcCC-CeEEEEcCCHHHHHHHHHHHHhcCCCeEEEecCHHHhhcccCCCceEEEEE
Confidence            467999999999999999966443 48999999 999988865     2679999999865   3543  999987

>3duw_A OMT, O-methyltransferase, putative; alternating of alpha and beta with complex SAH; HET: SAH; 1.20A {Bacillus cereus} PDB: 3dul_A*

Probab=99.20  E-value=5.1e-12  Score=80.54  Aligned_cols=67  Identities=13%  Similarity=0.239  Sum_probs=56.1

Q ss_pred             CCCCeEEEecCCchHHHHHHHHHCC-CCeEEEeeh-HHHHHhCCC-------CCCeeEEEecCCCCC--------CcccE
Q 034578           22 NNIRSMVDVGGGTGTVLAEIVKSYP-HIKGINFDL-QHVIATAPT-------HEGVSHVGGDMFDAI--------PNADA   84 (90)
Q Consensus        22 ~~~~~vlDvG~G~G~~~~~l~~~~p-~~~~~~~D~-p~~~~~a~~-------~~rv~~~~~d~~~~~--------p~~D~   84 (90)
                      .+..+|||+|||+|..+..+++.+| +.+++++|+ |.+++.+++       .++++++.+|+.+.+        ..+|+
T Consensus        57 ~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~fD~  136 (223)
T 3duw_A           57 QGARNILEIGTLGGYSTIWLARGLSSGGRVVTLEASEKHADIARSNIERANLNDRVEVRTGLALDSLQQIENEKYEPFDF  136 (223)
T ss_dssp             HTCSEEEEECCTTSHHHHHHHTTCCSSCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHHTTCCCCSE
T ss_pred             hCCCEEEEecCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcCCCCcCE
Confidence            3568999999999999999999998 899999999 999888764       257999999987622        23899


Q ss_pred             EEee
Q 034578           85 VFMK   88 (90)
Q Consensus        85 i~l~   88 (90)
                      |++.
T Consensus       137 v~~d  140 (223)
T 3duw_A          137 IFID  140 (223)
T ss_dssp             EEEC
T ss_pred             EEEc
Confidence            9864

>3u81_A Catechol O-methyltransferase; neurotransmitter degradation, transferase transferase inhibitor complex; HET: SAH; 1.13A {Rattus norvegicus} SCOP: c.66.1.1 PDB: 3nwe_A* 3oe5_A* 3ozr_A* 3oe4_A* 3ozt_A* 3ozs_A* 3r6t_A* 3hvi_A* 1jr4_A* 1vid_A* 1h1d_A* 2cl5_A* 3hvh_A* 3hvj_A* 3hvk_A* 3nw9_A* 3nwb_A* 3s68_A* 2zlb_A 2zth_A* ...

Probab=99.20  E-value=1e-11  Score=79.37  Aligned_cols=67  Identities=13%  Similarity=0.262  Sum_probs=55.8

Q ss_pred             CCCeEEEecCCchHHHHHHHHHCC-CCeEEEeeh-HHHHHhCCC-------CCCeeEEEecCCC---CCC------cccE
Q 034578           23 NIRSMVDVGGGTGTVLAEIVKSYP-HIKGINFDL-QHVIATAPT-------HEGVSHVGGDMFD---AIP------NADA   84 (90)
Q Consensus        23 ~~~~vlDvG~G~G~~~~~l~~~~p-~~~~~~~D~-p~~~~~a~~-------~~rv~~~~~d~~~---~~p------~~D~   84 (90)
                      +..+|||+|||+|..+..+++..| ..+++++|+ |.+++.|++       .++++++.+|+.+   .++      .+|+
T Consensus        58 ~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~fD~  137 (221)
T 3u81_A           58 SPSLVLELGAYCGYSAVRMARLLQPGARLLTMEINPDCAAITQQMLNFAGLQDKVTILNGASQDLIPQLKKKYDVDTLDM  137 (221)
T ss_dssp             CCSEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHGGGTTTTSCCCCCSE
T ss_pred             CCCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCChHHHHHHHHHHHHcCCCCceEEEECCHHHHHHHHHHhcCCCceEE
Confidence            468999999999999999999875 889999999 999998876       2579999999754   232      3999


Q ss_pred             EEeec
Q 034578           85 VFMKV   89 (90)
Q Consensus        85 i~l~~   89 (90)
                      |++..
T Consensus       138 V~~d~  142 (221)
T 3u81_A          138 VFLDH  142 (221)
T ss_dssp             EEECS
T ss_pred             EEEcC
Confidence            98753

>2y1w_A Histone-arginine methyltransferase CARM1; histone modification; HET: SFG 849; 2.10A {Homo sapiens} PDB: 2y1x_A* 3b3f_A* 3b3g_A 2v74_B* 2v7e_A

Probab=99.20  E-value=6.6e-11  Score=80.65  Aligned_cols=77  Identities=14%  Similarity=0.208  Sum_probs=60.0

Q ss_pred             HHHHHhhcccCCCCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeehHHHHHhCCC-------CCCeeEEEecCCC-CCC
Q 034578            9 MKAFVSHYKVDGFNNIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDLQHVIATAPT-------HEGVSHVGGDMFD-AIP   80 (90)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~p~~~~~a~~-------~~rv~~~~~d~~~-~~p   80 (90)
                      .+.+++.+.   ..+..+|||||||+|.++..++++ +..+++++|+.++++.+++       .++++++.+|+.+ ++|
T Consensus        39 ~~~i~~~l~---~~~~~~VLDiGcGtG~ls~~la~~-g~~~V~~vD~s~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~~~  114 (348)
T 2y1w_A           39 QRAILQNHT---DFKDKIVLDVGCGSGILSFFAAQA-GARKIYAVEASTMAQHAEVLVKSNNLTDRIVVIPGKVEEVSLP  114 (348)
T ss_dssp             HHHHHHTGG---GTTTCEEEEETCTTSHHHHHHHHT-TCSEEEEEECSTHHHHHHHHHHHTTCTTTEEEEESCTTTCCCS
T ss_pred             HHHHHhccc---cCCcCEEEEcCCCccHHHHHHHhC-CCCEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcchhhCCCC
Confidence            455666665   445689999999999999999885 6679999999336666654       2689999999987 555


Q ss_pred             c-ccEEEeec
Q 034578           81 N-ADAVFMKV   89 (90)
Q Consensus        81 ~-~D~i~l~~   89 (90)
                      + +|+|+...
T Consensus       115 ~~~D~Ivs~~  124 (348)
T 2y1w_A          115 EQVDIIISEP  124 (348)
T ss_dssp             SCEEEEEECC
T ss_pred             CceeEEEEeC
Confidence            5 99999753

>3gdh_A Trimethylguanosine synthase homolog; M7G, CAP, dimethyltransferase, usnRNA, snoRNA, telomerase, cytoplasm, methyltransferase, nucleus; HET: MGP SAH; 2.00A {Homo sapiens} PDB: 3egi_A*

Probab=99.20  E-value=5.6e-12  Score=81.19  Aligned_cols=64  Identities=23%  Similarity=0.324  Sum_probs=54.4

Q ss_pred             CCCeEEEecCCchHHHHHHHHHCCCCeEEEeeh-HHHHHhCCCC-------CCeeEEEecCCCCCC--cccEEEee
Q 034578           23 NIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDL-QHVIATAPTH-------EGVSHVGGDMFDAIP--NADAVFMK   88 (90)
Q Consensus        23 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~-------~rv~~~~~d~~~~~p--~~D~i~l~   88 (90)
                      +..+|||+|||+|.++..+++..  .+++++|+ |.+++.++++       ++++++.+|+.+..+  .+|+|++.
T Consensus        78 ~~~~vLD~gcG~G~~~~~la~~~--~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~D~v~~~  151 (241)
T 3gdh_A           78 KCDVVVDAFCGVGGNTIQFALTG--MRVIAIDIDPVKIALARNNAEVYGIADKIEFICGDFLLLASFLKADVVFLS  151 (241)
T ss_dssp             CCSEEEETTCTTSHHHHHHHHTT--CEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHGGGCCCSEEEEC
T ss_pred             CCCEEEECccccCHHHHHHHHcC--CEEEEEECCHHHHHHHHHHHHHcCCCcCeEEEECChHHhcccCCCCEEEEC
Confidence            46899999999999999999974  88999999 9999988752       489999999987323  39999975

>3id6_C Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; C/D guide RNA, 2'-O-methylation, coiled-coil, methyltransfer binding, rRNA processing; HET: SAM; 2.60A {Sulfolobus solfataricus} SCOP: c.66.1.0 PDB: 3id5_B* 3pla_E*

Probab=99.20  E-value=1.8e-10  Score=75.17  Aligned_cols=85  Identities=13%  Similarity=0.175  Sum_probs=65.0

Q ss_pred             chhhhHHHHHhhcccCCCCCCCeEEEecCCchHHHHHHHHH-CCCCeEEEeeh-HHHH----HhCCCCCCeeEEEecCCC
Q 034578            4 TTKITMKAFVSHYKVDGFNNIRSMVDVGGGTGTVLAEIVKS-YPHIKGINFDL-QHVI----ATAPTHEGVSHVGGDMFD   77 (90)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~-~p~~~~~~~D~-p~~~----~~a~~~~rv~~~~~d~~~   77 (90)
                      .....+..++..++...+.+..+|||+|||+|.++..+++. .|..+++++|+ |.++    +.+++..++.++.+|...
T Consensus        57 ~~skla~~ll~~l~~~~l~~g~~VLDlG~GtG~~t~~la~~v~~~G~V~avD~s~~~l~~l~~~a~~r~nv~~i~~Da~~  136 (232)
T 3id6_C           57 FRSKLAGAILKGLKTNPIRKGTKVLYLGAASGTTISHVSDIIELNGKAYGVEFSPRVVRELLLVAQRRPNIFPLLADARF  136 (232)
T ss_dssp             TTCHHHHHHHTTCSCCSCCTTCEEEEETCTTSHHHHHHHHHHTTTSEEEEEECCHHHHHHHHHHHHHCTTEEEEECCTTC
T ss_pred             HHHHHHHHHHhhhhhcCCCCCCEEEEEeecCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhcCCeEEEEccccc
Confidence            45567788888776212556789999999999999999987 47889999999 8764    444445789999999876


Q ss_pred             C-----CC-cccEEEee
Q 034578           78 A-----IP-NADAVFMK   88 (90)
Q Consensus        78 ~-----~p-~~D~i~l~   88 (90)
                      +     ++ .+|+|++.
T Consensus       137 ~~~~~~~~~~~D~I~~d  153 (232)
T 3id6_C          137 PQSYKSVVENVDVLYVD  153 (232)
T ss_dssp             GGGTTTTCCCEEEEEEC
T ss_pred             chhhhccccceEEEEec
Confidence            2     22 38999864

>3tm4_A TRNA (guanine N2-)-methyltransferase TRM14; rossmann fold, thump domain, tRNA methyltransferase; HET: SAM; 1.95A {Pyrococcus furiosus} PDB: 3tlj_A* 3tm5_A*

Probab=99.20  E-value=2.3e-11  Score=83.64  Aligned_cols=80  Identities=16%  Similarity=0.151  Sum_probs=64.7

Q ss_pred             hhhhHHHHHhhcccCCCCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeeh-HHHHHhCCCC-------CCeeEEEecCC
Q 034578            5 TKITMKAFVSHYKVDGFNNIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDL-QHVIATAPTH-------EGVSHVGGDMF   76 (90)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~-------~rv~~~~~d~~   76 (90)
                      ...++..++... +   .+..+|||+|||+|.+++.+++..+..+++++|+ |.+++.|+++       +++++..+|+.
T Consensus       203 ~~~la~~l~~~~-~---~~~~~vLD~gCGsG~~~i~~a~~~~~~~v~g~Dis~~~l~~A~~n~~~~gl~~~i~~~~~D~~  278 (373)
T 3tm4_A          203 KASIANAMIELA-E---LDGGSVLDPMCGSGTILIELALRRYSGEIIGIEKYRKHLIGAEMNALAAGVLDKIKFIQGDAT  278 (373)
T ss_dssp             CHHHHHHHHHHH-T---CCSCCEEETTCTTCHHHHHHHHTTCCSCEEEEESCHHHHHHHHHHHHHTTCGGGCEEEECCGG
T ss_pred             cHHHHHHHHHhh-c---CCCCEEEEccCcCcHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHHcCCCCceEEEECChh
Confidence            445566666554 3   3567899999999999999999988778999999 9999988762       58999999998


Q ss_pred             C-CCC--cccEEEee
Q 034578           77 D-AIP--NADAVFMK   88 (90)
Q Consensus        77 ~-~~p--~~D~i~l~   88 (90)
                      + +.+  .+|+|+++
T Consensus       279 ~~~~~~~~fD~Ii~n  293 (373)
T 3tm4_A          279 QLSQYVDSVDFAISN  293 (373)
T ss_dssp             GGGGTCSCEEEEEEE
T ss_pred             hCCcccCCcCEEEEC
Confidence            8 443  39999984

>3tfw_A Putative O-methyltransferase; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium; 1.88A {Klebsiella pneumoniae subsp}

Probab=99.19  E-value=6.3e-12  Score=81.95  Aligned_cols=67  Identities=13%  Similarity=0.266  Sum_probs=56.4

Q ss_pred             CCCCeEEEecCCchHHHHHHHHHCC-CCeEEEeeh-HHHHHhCCC-------CCCeeEEEecCCC---CCC---cccEEE
Q 034578           22 NNIRSMVDVGGGTGTVLAEIVKSYP-HIKGINFDL-QHVIATAPT-------HEGVSHVGGDMFD---AIP---NADAVF   86 (90)
Q Consensus        22 ~~~~~vlDvG~G~G~~~~~l~~~~p-~~~~~~~D~-p~~~~~a~~-------~~rv~~~~~d~~~---~~p---~~D~i~   86 (90)
                      .+..+|||||||+|..+..+++.+| ..+++++|+ |.+++.|++       .++++++.+|+.+   .++   .||+|+
T Consensus        62 ~~~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~l~~~~~~~~fD~V~  141 (248)
T 3tfw_A           62 TQAKRILEIGTLGGYSTIWMARELPADGQLLTLEADAHHAQVARENLQLAGVDQRVTLREGPALQSLESLGECPAFDLIF  141 (248)
T ss_dssp             HTCSEEEEECCTTSHHHHHHHTTSCTTCEEEEEECCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHTCCSCCCCSEEE
T ss_pred             cCCCEEEEecCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHhcCCCCCeEEEE
Confidence            3568999999999999999999998 899999999 999988865       2589999999865   222   499998


Q ss_pred             ee
Q 034578           87 MK   88 (90)
Q Consensus        87 l~   88 (90)
                      +.
T Consensus       142 ~d  143 (248)
T 3tfw_A          142 ID  143 (248)
T ss_dssp             EC
T ss_pred             EC
Confidence            64

>2b25_A Hypothetical protein; structural genomics, methyl transferase, SAM, structural GEN consortium, SGC, transferase; HET: SAM; 2.50A {Homo sapiens} SCOP: c.66.1.13

Probab=99.19  E-value=7.5e-11  Score=79.67  Aligned_cols=77  Identities=21%  Similarity=0.307  Sum_probs=61.3

Q ss_pred             HHHHHhhcccCCCCCCCeEEEecCCchHHHHHHHHH-CCCCeEEEeeh-HHHHHhCCCC-----------------CCee
Q 034578            9 MKAFVSHYKVDGFNNIRSMVDVGGGTGTVLAEIVKS-YPHIKGINFDL-QHVIATAPTH-----------------EGVS   69 (90)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~-~p~~~~~~~D~-p~~~~~a~~~-----------------~rv~   69 (90)
                      ...+++.++   ..+..+|||+|||+|.++..+++. .|..+++++|+ |.+++.|+++                 ++++
T Consensus        94 ~~~~l~~l~---~~~g~~VLDiG~G~G~~~~~la~~~g~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~ln~~~~~~~~v~  170 (336)
T 2b25_A           94 INMILSMMD---INPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDNVD  170 (336)
T ss_dssp             HHHHHHHHT---CCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCCCCEE
T ss_pred             HHHHHHhcC---CCCCCEEEEeCCCcCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHHhhcccccccccccCCceE
Confidence            445566665   556789999999999999999998 58899999999 9988887651                 5799


Q ss_pred             EEEecCCCC---CCc--ccEEEee
Q 034578           70 HVGGDMFDA---IPN--ADAVFMK   88 (90)
Q Consensus        70 ~~~~d~~~~---~p~--~D~i~l~   88 (90)
                      ++.+|+.+.   ++.  +|+|++.
T Consensus       171 ~~~~d~~~~~~~~~~~~fD~V~~~  194 (336)
T 2b25_A          171 FIHKDISGATEDIKSLTFDAVALD  194 (336)
T ss_dssp             EEESCTTCCC-------EEEEEEC
T ss_pred             EEECChHHcccccCCCCeeEEEEC
Confidence            999999873   343  8999874

>1u2z_A Histone-lysine N-methyltransferase, H3 lysine-79 specific; histone methyltransferase, nucleosome; HET: SAH; 2.20A {Saccharomyces cerevisiae} SCOP: c.66.1.31

Probab=99.19  E-value=4.6e-11  Score=84.02  Aligned_cols=79  Identities=11%  Similarity=0.258  Sum_probs=61.4

Q ss_pred             hHHHHHhhcccCCCCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeeh-HHHHHhC-------CC--------CCCeeEE
Q 034578            8 TMKAFVSHYKVDGFNNIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDL-QHVIATA-------PT--------HEGVSHV   71 (90)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a-------~~--------~~rv~~~   71 (90)
                      .+..+++.+.   ..+..+|||||||+|.++..+++.++..+++++|+ +.+++.|       ++        ..+++++
T Consensus       230 ~v~~ml~~l~---l~~g~~VLDLGCGsG~la~~LA~~~g~~~V~GVDis~~~l~~A~~Ml~~ar~~~~~~Gl~~~nV~~i  306 (433)
T 1u2z_A          230 FLSDVYQQCQ---LKKGDTFMDLGSGVGNCVVQAALECGCALSFGCEIMDDASDLTILQYEELKKRCKLYGMRLNNVEFS  306 (433)
T ss_dssp             HHHHHHHHTT---CCTTCEEEEESCTTSHHHHHHHHHHCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHTTBCCCCEEEE
T ss_pred             HHHHHHHhcC---CCCCCEEEEeCCCcCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHhHHHHHHHHHHcCCCCCceEEE
Confidence            4556666666   56678999999999999999999988889999999 8887776       43        2589999


Q ss_pred             EecCC-CC--C----CcccEEEeec
Q 034578           72 GGDMF-DA--I----PNADAVFMKV   89 (90)
Q Consensus        72 ~~d~~-~~--~----p~~D~i~l~~   89 (90)
                      .+|-+ .+  +    ..||+|++++
T Consensus       307 ~gD~~~~~~~~~~~~~~FDvIvvn~  331 (433)
T 1u2z_A          307 LKKSFVDNNRVAELIPQCDVILVNN  331 (433)
T ss_dssp             ESSCSTTCHHHHHHGGGCSEEEECC
T ss_pred             EcCccccccccccccCCCCEEEEeC
Confidence            87544 32  2    2399999863

>3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint center for structural genomics, JCSG; HET: MSE; 1.90A {Exiguobacterium sibiricum 255-15}

Probab=99.19  E-value=4.9e-11  Score=76.35  Aligned_cols=63  Identities=24%  Similarity=0.359  Sum_probs=53.6

Q ss_pred             CCCeEEEecCCchHHHHHHHHHCCCCeEEEeeh-HHHHHhCCC-----CCCeeEEEecCCC-CCCc-ccEEEee
Q 034578           23 NIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDL-QHVIATAPT-----HEGVSHVGGDMFD-AIPN-ADAVFMK   88 (90)
Q Consensus        23 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~-----~~rv~~~~~d~~~-~~p~-~D~i~l~   88 (90)
                      +..+|||+|||+|.++..+++.   .+++++|+ |.+++.+++     ..+++++.+|+.+ +.+. +|+|++.
T Consensus        33 ~~~~vLdiG~G~G~~~~~l~~~---~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~fD~v~~~  103 (243)
T 3d2l_A           33 PGKRIADIGCGTGTATLLLADH---YEVTGVDLSEEMLEIAQEKAMETNRHVDFWVQDMRELELPEPVDAITIL  103 (243)
T ss_dssp             TTCEEEEESCTTCHHHHHHTTT---SEEEEEESCHHHHHHHHHHHHHTTCCCEEEECCGGGCCCSSCEEEEEEC
T ss_pred             CCCeEEEecCCCCHHHHHHhhC---CeEEEEECCHHHHHHHHHhhhhcCCceEEEEcChhhcCCCCCcCEEEEe
Confidence            3579999999999999999887   78999999 999988875     2579999999977 4554 9999875

>1ne2_A Hypothetical protein TA1320; structural genomics, conserved hypothetical protein, PSI, protein structure initiative; 1.75A {Thermoplasma acidophilum} SCOP: c.66.1.32

Probab=99.18  E-value=5e-11  Score=74.88  Aligned_cols=64  Identities=27%  Similarity=0.342  Sum_probs=54.5

Q ss_pred             CCCeEEEecCCchHHHHHHHHHCCCCeEEEeeh-HHHHHhCCCC-CCeeEEEecCCCCCCc-ccEEEee
Q 034578           23 NIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDL-QHVIATAPTH-EGVSHVGGDMFDAIPN-ADAVFMK   88 (90)
Q Consensus        23 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~-~rv~~~~~d~~~~~p~-~D~i~l~   88 (90)
                      +..+|||+|||+|.++..+++. +..+++++|+ |.+++.++++ .+++++.+|+.+ +|. +|+|+++
T Consensus        51 ~~~~vlD~gcG~G~~~~~l~~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~d~~~-~~~~~D~v~~~  117 (200)
T 1ne2_A           51 GGRSVIDAGTGNGILACGSYLL-GAESVTAFDIDPDAIETAKRNCGGVNFMVADVSE-ISGKYDTWIMN  117 (200)
T ss_dssp             BTSEEEEETCTTCHHHHHHHHT-TBSEEEEEESCHHHHHHHHHHCTTSEEEECCGGG-CCCCEEEEEEC
T ss_pred             CCCEEEEEeCCccHHHHHHHHc-CCCEEEEEECCHHHHHHHHHhcCCCEEEECcHHH-CCCCeeEEEEC
Confidence            5679999999999999999987 5567999999 9999988764 389999999977 444 9999985

>3tr6_A O-methyltransferase; cellular processes; HET: SAH; 2.70A {Coxiella burnetii} SCOP: c.66.1.0

Probab=99.18  E-value=9.6e-12  Score=79.26  Aligned_cols=66  Identities=17%  Similarity=0.201  Sum_probs=55.8

Q ss_pred             CCCeEEEecCCchHHHHHHHHHCC-CCeEEEeeh-HHHHHhCCC-------CCCeeEEEecCCCC---C------CcccE
Q 034578           23 NIRSMVDVGGGTGTVLAEIVKSYP-HIKGINFDL-QHVIATAPT-------HEGVSHVGGDMFDA---I------PNADA   84 (90)
Q Consensus        23 ~~~~vlDvG~G~G~~~~~l~~~~p-~~~~~~~D~-p~~~~~a~~-------~~rv~~~~~d~~~~---~------p~~D~   84 (90)
                      +..+|||+|||+|..+..+++.+| ..+++++|+ |.+++.+++       .++++++.+|..+.   +      ..+|+
T Consensus        64 ~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fD~  143 (225)
T 3tr6_A           64 QAKKVIDIGTFTGYSAIAMGLALPKDGTLITCDVDEKSTALAKEYWEKAGLSDKIGLRLSPAKDTLAELIHAGQAWQYDL  143 (225)
T ss_dssp             TCSEEEEECCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHTTTCTTCEEE
T ss_pred             CCCEEEEeCCcchHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeCCHHHHHHHhhhccCCCCccE
Confidence            467999999999999999999988 899999999 999888765       25799999998662   2      34999


Q ss_pred             EEee
Q 034578           85 VFMK   88 (90)
Q Consensus        85 i~l~   88 (90)
                      |++.
T Consensus       144 v~~~  147 (225)
T 3tr6_A          144 IYID  147 (225)
T ss_dssp             EEEC
T ss_pred             EEEC
Confidence            9864

>2frn_A Hypothetical protein PH0793; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pyrococcus horikoshii OT3} PDB: 3k6r_A 3a25_A* 3a26_A*

Probab=99.18  E-value=5.5e-11  Score=78.82  Aligned_cols=65  Identities=22%  Similarity=0.114  Sum_probs=55.6

Q ss_pred             CCCeEEEecCCchHHHHHHHHHCCCCeEEEeeh-HHHHHhCCC-------CCCeeEEEecCCCCC-Cc-ccEEEee
Q 034578           23 NIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDL-QHVIATAPT-------HEGVSHVGGDMFDAI-PN-ADAVFMK   88 (90)
Q Consensus        23 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~-------~~rv~~~~~d~~~~~-p~-~D~i~l~   88 (90)
                      +..+|||+|||+|.++..+++..+. +++++|+ |.+++.+++       .++++++.+|+++.. +. +|+|++.
T Consensus       125 ~~~~VLDlgcG~G~~~~~la~~~~~-~V~~vD~s~~~~~~a~~n~~~n~~~~~v~~~~~D~~~~~~~~~fD~Vi~~  199 (278)
T 2frn_A          125 PDELVVDMFAGIGHLSLPIAVYGKA-KVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFPGENIADRILMG  199 (278)
T ss_dssp             TTCEEEETTCTTTTTHHHHHHHTCC-EEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTCCCCSCEEEEEEC
T ss_pred             CCCEEEEecccCCHHHHHHHHhCCC-EEEEEECCHHHHHHHHHHHHHcCCCceEEEEECCHHHhcccCCccEEEEC
Confidence            4689999999999999999999876 8999999 999998875       246999999998843 33 9999885

>2ift_A Putative methylase HI0767; NESG, Y767_haein, structural genomics, PSI-2, protein structure initiative; 2.30A {Haemophilus influenzae} SCOP: c.66.1.46

Probab=99.18  E-value=6.9e-12  Score=79.45  Aligned_cols=65  Identities=18%  Similarity=0.217  Sum_probs=52.9

Q ss_pred             CCCeEEEecCCchHHHHHHHHHCCCCeEEEeeh-HHHHHhCCCC--------CCeeEEEecCCCCC-----Cc-ccEEEe
Q 034578           23 NIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDL-QHVIATAPTH--------EGVSHVGGDMFDAI-----PN-ADAVFM   87 (90)
Q Consensus        23 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~--------~rv~~~~~d~~~~~-----p~-~D~i~l   87 (90)
                      +..+|||+|||+|.++..++++.. .+++++|+ |.+++.++++        ++++++.+|+.+.+     .. +|+|++
T Consensus        53 ~~~~vLDlGcGtG~~~~~~~~~~~-~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~  131 (201)
T 2ift_A           53 HQSECLDGFAGSGSLGFEALSRQA-KKVTFLELDKTVANQLKKNLQTLKCSSEQAEVINQSSLDFLKQPQNQPHFDVVFL  131 (201)
T ss_dssp             TTCEEEETTCTTCHHHHHHHHTTC-SEEEEECSCHHHHHHHHHHHHHTTCCTTTEEEECSCHHHHTTSCCSSCCEEEEEE
T ss_pred             CCCeEEEcCCccCHHHHHHHHccC-CEEEEEECCHHHHHHHHHHHHHhCCCccceEEEECCHHHHHHhhccCCCCCEEEE
Confidence            357999999999999999887643 68999999 9999988752        58999999987621     25 899987


Q ss_pred             e
Q 034578           88 K   88 (90)
Q Consensus        88 ~   88 (90)
                      .
T Consensus       132 ~  132 (201)
T 2ift_A          132 D  132 (201)
T ss_dssp             C
T ss_pred             C
Confidence            5

>3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032}

Probab=99.17  E-value=1.1e-10  Score=72.15  Aligned_cols=64  Identities=22%  Similarity=0.231  Sum_probs=55.1

Q ss_pred             CCCeEEEecCCchHHHHHHHHHCCCCeEEEeeh-HHHHHhCCCC-CCeeEEEecCCC-CCC-c-ccEEEee
Q 034578           23 NIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDL-QHVIATAPTH-EGVSHVGGDMFD-AIP-N-ADAVFMK   88 (90)
Q Consensus        23 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~-~rv~~~~~d~~~-~~p-~-~D~i~l~   88 (90)
                      +..+|||+|||+|.++..+++.  ..+++++|+ |.+++.++++ .+++++.+|+.+ +++ . +|+|++.
T Consensus        46 ~~~~vLdiG~G~G~~~~~l~~~--~~~v~~~D~~~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~~D~i~~~  114 (195)
T 3cgg_A           46 RGAKILDAGCGQGRIGGYLSKQ--GHDVLGTDLDPILIDYAKQDFPEARWVVGDLSVDQISETDFDLIVSA  114 (195)
T ss_dssp             TTCEEEEETCTTTHHHHHHHHT--TCEEEEEESCHHHHHHHHHHCTTSEEEECCTTTSCCCCCCEEEEEEC
T ss_pred             CCCeEEEECCCCCHHHHHHHHC--CCcEEEEcCCHHHHHHHHHhCCCCcEEEcccccCCCCCCceeEEEEC
Confidence            5679999999999999999997  568999999 9999888763 679999999987 554 3 9999985

>2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET: PGE GOL; 2.00A {Clostridium acetobutylicum}

Probab=99.17  E-value=3.9e-11  Score=75.35  Aligned_cols=68  Identities=15%  Similarity=0.148  Sum_probs=53.7

Q ss_pred             CCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeeh-HHHHHhCCC-----CCCeeEEEecCCC-CCC-c-ccEEEeec
Q 034578           21 FNNIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDL-QHVIATAPT-----HEGVSHVGGDMFD-AIP-N-ADAVFMKV   89 (90)
Q Consensus        21 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~-----~~rv~~~~~d~~~-~~p-~-~D~i~l~~   89 (90)
                      ..+..+|||+|||+|.++..++.. +..+++++|+ +.+++.+++     ..+++++.+|+.+ +++ . +|+|++..
T Consensus        21 ~~~~~~vLDiGcG~G~~~~~~~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~   97 (209)
T 2p8j_A           21 SNLDKTVLDCGAGGDLPPLSIFVE-DGYKTYGIEISDLQLKKAENFSRENNFKLNISKGDIRKLPFKDESMSFVYSYG   97 (209)
T ss_dssp             SSSCSEEEEESCCSSSCTHHHHHH-TTCEEEEEECCHHHHHHHHHHHHHHTCCCCEEECCTTSCCSCTTCEEEEEECS
T ss_pred             cCCCCEEEEECCCCCHHHHHHHHh-CCCEEEEEECCHHHHHHHHHHHHhcCCceEEEECchhhCCCCCCceeEEEEcC
Confidence            345689999999999986555544 5679999999 999988875     3679999999987 554 3 99999754

>3k0b_A Predicted N6-adenine-specific DNA methylase; methylase,PF01170, putative RNA methylase, PSI,MCSG, structu genomics; 1.50A {Listeria monocytogenes str}

Probab=99.17  E-value=5.3e-11  Score=82.68  Aligned_cols=83  Identities=17%  Similarity=0.116  Sum_probs=67.0

Q ss_pred             cchhhhHHHHHhhcccCCCCCCCeEEEecCCchHHHHHHHHHCCC-----------------------------------
Q 034578            3 CTTKITMKAFVSHYKVDGFNNIRSMVDVGGGTGTVLAEIVKSYPH-----------------------------------   47 (90)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~-----------------------------------   47 (90)
                      .+.+.++..++....   +.+...|+|.+||+|.++++.+....+                                   
T Consensus       184 pl~e~lAa~ll~l~~---~~~~~~vlDp~CGSGt~~ieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~  260 (393)
T 3k0b_A          184 PIKETMAAALVLLTS---WHPDRPFYDPVCGSGTIPIEAALIGQNIAPGFNREFVSETWDWMPKQVWADARQEAEDLANY  260 (393)
T ss_dssp             SCCHHHHHHHHHHSC---CCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHCCT
T ss_pred             CCcHHHHHHHHHHhC---CCCCCeEEEcCCCCCHHHHHHHHHhcCcCCCccccchhhccccCCHHHHHHHHHHHHHhhcc
Confidence            345667888888777   556789999999999999998876543                                   


Q ss_pred             ---CeEEEeeh-HHHHHhCCC-------CCCeeEEEecCCC-CCCc-ccEEEee
Q 034578           48 ---IKGINFDL-QHVIATAPT-------HEGVSHVGGDMFD-AIPN-ADAVFMK   88 (90)
Q Consensus        48 ---~~~~~~D~-p~~~~~a~~-------~~rv~~~~~d~~~-~~p~-~D~i~l~   88 (90)
                         .+++++|+ |.+++.|++       .+++++..+|+++ +.+. +|+|+++
T Consensus       261 ~~~~~V~GvDid~~al~~Ar~Na~~~gl~~~I~~~~~D~~~~~~~~~fD~Iv~N  314 (393)
T 3k0b_A          261 DQPLNIIGGDIDARLIEIAKQNAVEAGLGDLITFRQLQVADFQTEDEYGVVVAN  314 (393)
T ss_dssp             TCCCCEEEEESCHHHHHHHHHHHHHTTCTTCSEEEECCGGGCCCCCCSCEEEEC
T ss_pred             cCCceEEEEECCHHHHHHHHHHHHHcCCCCceEEEECChHhCCCCCCCCEEEEC
Confidence               57999999 999998876       2469999999988 3444 9999976

>2ih2_A Modification methylase TAQI; DNA, DNA methyltransferase, target base partner, 5-methylpyr 2(1H)-ONE, base flipping; HET: 5PY 6MA NEA; 1.61A {Thermus aquaticus} SCOP: c.66.1.27 d.287.1.1 PDB: 2ibs_A* 2ibt_A* 2ih4_A* 2ih5_A* 2jg3_A* 2np6_A* 2np7_A* 1aqj_A* 1aqi_A* 2adm_A* 1g38_A*

Probab=99.17  E-value=6e-11  Score=81.79  Aligned_cols=77  Identities=9%  Similarity=0.064  Sum_probs=62.7

Q ss_pred             hhhHHHHHhhcccCCCCCCCeEEEecCCchHHHHHHHHHC-CCCeEEEeeh-HHHHHhCCCCCCeeEEEecCCCCCC--c
Q 034578            6 KITMKAFVSHYKVDGFNNIRSMVDVGGGTGTVLAEIVKSY-PHIKGINFDL-QHVIATAPTHEGVSHVGGDMFDAIP--N   81 (90)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~-p~~~~~~~D~-p~~~~~a~~~~rv~~~~~d~~~~~p--~   81 (90)
                      +.+++.+++.+.   ..+..+|||+|||+|.++..+++++ +..+++++|+ |.+++.|   .+++++.+|+++..+  .
T Consensus        25 ~~l~~~~~~~~~---~~~~~~vLD~gcGtG~~~~~~~~~~~~~~~i~gvDi~~~~~~~a---~~~~~~~~D~~~~~~~~~   98 (421)
T 2ih2_A           25 PEVVDFMVSLAE---APRGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKALDLP---PWAEGILADFLLWEPGEA   98 (421)
T ss_dssp             HHHHHHHHHHCC---CCTTCEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTTCCCC---TTEEEEESCGGGCCCSSC
T ss_pred             HHHHHHHHHhhc---cCCCCEEEECCCCChHHHHHHHHHhCCCCeEEEEECCHHHHHhC---CCCcEEeCChhhcCccCC
Confidence            345666777665   3345699999999999999999987 7789999999 9988777   689999999988433  3


Q ss_pred             ccEEEee
Q 034578           82 ADAVFMK   88 (90)
Q Consensus        82 ~D~i~l~   88 (90)
                      +|+|+.+
T Consensus        99 fD~Ii~N  105 (421)
T 2ih2_A           99 FDLILGN  105 (421)
T ss_dssp             EEEEEEC
T ss_pred             CCEEEEC
Confidence            9999984

>1af7_A Chemotaxis receptor methyltransferase CHER; chemotaxis receptor methylation; HET: SAH; 2.00A {Salmonella typhimurium} SCOP: a.58.1.1 c.66.1.8 PDB: 1bc5_A*

Probab=99.17  E-value=4.5e-11  Score=79.66  Aligned_cols=67  Identities=15%  Similarity=0.199  Sum_probs=54.4

Q ss_pred             CCeEEEecCCchH----HHHHHHHHCC----CCeEEEeeh-HHHHHhCCCC-----------------------------
Q 034578           24 IRSMVDVGGGTGT----VLAEIVKSYP----HIKGINFDL-QHVIATAPTH-----------------------------   65 (90)
Q Consensus        24 ~~~vlDvG~G~G~----~~~~l~~~~p----~~~~~~~D~-p~~~~~a~~~-----------------------------   65 (90)
                      ..+|+|+|||||.    ++..+++..|    +.++++.|+ +.|++.|++.                             
T Consensus       106 ~~rIld~GCgTGee~ysiAi~L~e~~~~~~~~~~I~atDis~~~L~~Ar~~~y~~~~~~~~~~~~~~~~f~~~~~~~~~~  185 (274)
T 1af7_A          106 EYRVWSAAASTGEEPYSIAITLADALGMAPGRWKVFASDIDTEVLEKARSGIYRLSELKTLSPQQLQRYFMRGTGPHEGL  185 (274)
T ss_dssp             CEEEEESCCTTTHHHHHHHHHHHHHHCSCTTSEEEEEEESCHHHHHHHHHTEEEGGGGTTSCHHHHHHHEEECCTTSCSE
T ss_pred             CcEEEEeeccCChhHHHHHHHHHHhcccCCCCeEEEEEECCHHHHHHHHhcCCchhhhhcCCHHHHHHHhhccccCCCCc
Confidence            4689999999998    6666777655    468999999 9999988642                             


Q ss_pred             --------CCeeEEEecCCC-CCC---cccEEEeecC
Q 034578           66 --------EGVSHVGGDMFD-AIP---NADAVFMKVA   90 (90)
Q Consensus        66 --------~rv~~~~~d~~~-~~p---~~D~i~l~~v   90 (90)
                              .+++|..+|+.+ ++|   .+|+|++++|
T Consensus       186 ~~v~~~lr~~V~F~~~dl~~~~~~~~~~fDlI~crnv  222 (274)
T 1af7_A          186 VRVRQELANYVEFSSVNLLEKQYNVPGPFDAIFCRNV  222 (274)
T ss_dssp             EEECHHHHTTEEEEECCTTCSSCCCCCCEEEEEECSS
T ss_pred             eeechhhcccCeEEecccCCCCCCcCCCeeEEEECCc
Confidence                    268999999998 454   3999999875

>3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A*

Probab=99.17  E-value=4.7e-11  Score=79.46  Aligned_cols=75  Identities=11%  Similarity=0.068  Sum_probs=59.9

Q ss_pred             hhHHHHHhhcccCCCCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeeh-HHHHHhCCC---CCCeeEEEecCCC-CCC-
Q 034578            7 ITMKAFVSHYKVDGFNNIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDL-QHVIATAPT---HEGVSHVGGDMFD-AIP-   80 (90)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~---~~rv~~~~~d~~~-~~p-   80 (90)
                      .+++.+++...   ..+. +|||||||+|.++..++++.  .+++++|+ +.+++.+++   .++++++.+|+++ +++ 
T Consensus        34 ~i~~~Iv~~~~---~~~~-~VLEIG~G~G~lt~~L~~~~--~~V~avEid~~~~~~l~~~~~~~~v~vi~~D~l~~~~~~  107 (271)
T 3fut_A           34 AHLRRIVEAAR---PFTG-PVFEVGPGLGALTRALLEAG--AEVTAIEKDLRLRPVLEETLSGLPVRLVFQDALLYPWEE  107 (271)
T ss_dssp             HHHHHHHHHHC---CCCS-CEEEECCTTSHHHHHHHHTT--CCEEEEESCGGGHHHHHHHTTTSSEEEEESCGGGSCGGG
T ss_pred             HHHHHHHHhcC---CCCC-eEEEEeCchHHHHHHHHHcC--CEEEEEECCHHHHHHHHHhcCCCCEEEEECChhhCChhh
Confidence            45677777777   5556 99999999999999999985  67999999 888887764   3689999999987 454 


Q ss_pred             --cccEEEe
Q 034578           81 --NADAVFM   87 (90)
Q Consensus        81 --~~D~i~l   87 (90)
                        .+|.|+.
T Consensus       108 ~~~~~~iv~  116 (271)
T 3fut_A          108 VPQGSLLVA  116 (271)
T ss_dssp             SCTTEEEEE
T ss_pred             ccCccEEEe
Confidence              3566654

>1i9g_A Hypothetical protein RV2118C; mtase, adoMet, crystal, structural genomics, protein structure initiative; HET: SAM; 1.98A {Mycobacterium tuberculosis} SCOP: c.66.1.13

Probab=99.16  E-value=8.3e-11  Score=77.14  Aligned_cols=78  Identities=15%  Similarity=0.259  Sum_probs=63.0

Q ss_pred             hHHHHHhhcccCCCCCCCeEEEecCCchHHHHHHHHH-CCCCeEEEeeh-HHHHHhCCC---------CCCeeEEEecCC
Q 034578            8 TMKAFVSHYKVDGFNNIRSMVDVGGGTGTVLAEIVKS-YPHIKGINFDL-QHVIATAPT---------HEGVSHVGGDMF   76 (90)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~-~p~~~~~~~D~-p~~~~~a~~---------~~rv~~~~~d~~   76 (90)
                      .+..+++.++   ..+..+|||+|||+|.++..+++. .|..+++++|+ |.+++.+++         .++++++.+|+.
T Consensus        87 ~~~~i~~~~~---~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~g~~~~~v~~~~~d~~  163 (280)
T 1i9g_A           87 DAAQIVHEGD---IFPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQPPDNWRLVVSDLA  163 (280)
T ss_dssp             HHHHHHHHTT---CCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHHTSCCTTEEEECSCGG
T ss_pred             HHHHHHHHcC---CCCCCEEEEEcccccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcCCCCCcEEEEECchH
Confidence            4456666666   566789999999999999999996 57899999999 998887764         247999999998


Q ss_pred             C-CCC-c-ccEEEee
Q 034578           77 D-AIP-N-ADAVFMK   88 (90)
Q Consensus        77 ~-~~p-~-~D~i~l~   88 (90)
                      + +++ . +|+|++.
T Consensus       164 ~~~~~~~~~D~v~~~  178 (280)
T 1i9g_A          164 DSELPDGSVDRAVLD  178 (280)
T ss_dssp             GCCCCTTCEEEEEEE
T ss_pred             hcCCCCCceeEEEEC
Confidence            7 443 2 8999874

>3evz_A Methyltransferase; NYSGXRC, NEW YORK SGX research CE structural genomics, protein structure initiative, pyrococc furiosus, PSI-2; 2.20A {Pyrococcus furiosus}

Probab=99.16  E-value=1.5e-10  Score=73.95  Aligned_cols=67  Identities=15%  Similarity=0.211  Sum_probs=55.5

Q ss_pred             CCCCCeEEEecCC-chHHHHHHHHHCCCCeEEEeeh-HHHHHhCCCC-----CCeeEEEecC--CCCCC-c-ccEEEee
Q 034578           21 FNNIRSMVDVGGG-TGTVLAEIVKSYPHIKGINFDL-QHVIATAPTH-----EGVSHVGGDM--FDAIP-N-ADAVFMK   88 (90)
Q Consensus        21 ~~~~~~vlDvG~G-~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~-----~rv~~~~~d~--~~~~p-~-~D~i~l~   88 (90)
                      ..+..+|||+||| +|.++..+++.. ..+++++|+ |.+++.++++     .+++++.+|+  +.+++ . +|+|+++
T Consensus        53 ~~~~~~vLDlG~G~~G~~~~~la~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~I~~n  130 (230)
T 3evz_A           53 LRGGEVALEIGTGHTAMMALMAEKFF-NCKVTATEVDEEFFEYARRNIERNNSNVRLVKSNGGIIKGVVEGTFDVIFSA  130 (230)
T ss_dssp             CCSSCEEEEECCTTTCHHHHHHHHHH-CCEEEEEECCHHHHHHHHHHHHHTTCCCEEEECSSCSSTTTCCSCEEEEEEC
T ss_pred             cCCCCEEEEcCCCHHHHHHHHHHHhc-CCEEEEEECCHHHHHHHHHHHHHhCCCcEEEeCCchhhhhcccCceeEEEEC
Confidence            3456899999999 999999999987 789999999 9999988752     3799999996  34454 3 9999975

>1g6q_1 HnRNP arginine N-methyltransferase; SAM-binding domain, beta-barrel, mixed alpha-beta, hexamer; 2.90A {Saccharomyces cerevisiae} SCOP: c.66.1.6

Probab=99.16  E-value=6.4e-11  Score=80.15  Aligned_cols=67  Identities=22%  Similarity=0.330  Sum_probs=54.1

Q ss_pred             CCCCeEEEecCCchHHHHHHHHHCCCCeEEEeehHHHHHhCCC-------CCCeeEEEecCCC-CCC-c-ccEEEeec
Q 034578           22 NNIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDLQHVIATAPT-------HEGVSHVGGDMFD-AIP-N-ADAVFMKV   89 (90)
Q Consensus        22 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~p~~~~~a~~-------~~rv~~~~~d~~~-~~p-~-~D~i~l~~   89 (90)
                      .+..+|||||||+|.++..++++ +..+++++|+.++++.+++       .++++++.+|+.+ ++| + +|+|+..+
T Consensus        37 ~~~~~VLDiGcGtG~ls~~la~~-g~~~v~~vD~s~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Ivs~~  113 (328)
T 1g6q_1           37 FKDKIVLDVGCGTGILSMFAAKH-GAKHVIGVDMSSIIEMAKELVELNGFSDKITLLRGKLEDVHLPFPKVDIIISEW  113 (328)
T ss_dssp             HTTCEEEEETCTTSHHHHHHHHT-CCSEEEEEESSTHHHHHHHHHHHTTCTTTEEEEESCTTTSCCSSSCEEEEEECC
T ss_pred             cCCCEEEEecCccHHHHHHHHHC-CCCEEEEEChHHHHHHHHHHHHHcCCCCCEEEEECchhhccCCCCcccEEEEeC
Confidence            35679999999999999999886 5568999999547776654       2679999999987 566 3 99999753

>3a27_A TYW2, uncharacterized protein MJ1557; wybutosine modification, transferase; HET: SAM; 2.00A {Methanocaldococcus jannaschii}

Probab=99.16  E-value=7e-11  Score=78.15  Aligned_cols=68  Identities=19%  Similarity=0.096  Sum_probs=58.0

Q ss_pred             CCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeeh-HHHHHhCCCC------CCeeEEEecCCCC-CC-cccEEEee
Q 034578           21 FNNIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDL-QHVIATAPTH------EGVSHVGGDMFDA-IP-NADAVFMK   88 (90)
Q Consensus        21 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~------~rv~~~~~d~~~~-~p-~~D~i~l~   88 (90)
                      +.+..+|||+|||+|.++..+++..+..+++++|+ |.+++.++++      .+++++.+|+.+. .+ .+|+|++.
T Consensus       117 ~~~~~~VLDlgcG~G~~s~~la~~~~~~~V~~vD~s~~av~~a~~n~~~n~l~~~~~~~~d~~~~~~~~~~D~Vi~d  193 (272)
T 3a27_A          117 SNENEVVVDMFAGIGYFTIPLAKYSKPKLVYAIEKNPTAYHYLCENIKLNKLNNVIPILADNRDVELKDVADRVIMG  193 (272)
T ss_dssp             CCTTCEEEETTCTTTTTHHHHHHHTCCSEEEEEECCHHHHHHHHHHHHHTTCSSEEEEESCGGGCCCTTCEEEEEEC
T ss_pred             cCCCCEEEEecCcCCHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEECChHHcCccCCceEEEEC
Confidence            45678999999999999999999998889999999 9999988752      5789999999874 22 38999875

>3r0q_C Probable protein arginine N-methyltransferase 4.2; arginine methyltransferase, methylation; HET: SAH; 2.61A {Arabidopsis thaliana}

Probab=99.16  E-value=8.6e-11  Score=80.91  Aligned_cols=77  Identities=17%  Similarity=0.237  Sum_probs=58.6

Q ss_pred             HHHHHhhcccCCCCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeehHHHHHhCCC-------CCCeeEEEecCCC-CCC
Q 034578            9 MKAFVSHYKVDGFNNIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDLQHVIATAPT-------HEGVSHVGGDMFD-AIP   80 (90)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~p~~~~~a~~-------~~rv~~~~~d~~~-~~p   80 (90)
                      .+.+.+...   ..+..+|||||||+|.++..++++. ..+++++|+..+++.+++       .++++++.+|+.+ ++|
T Consensus        52 ~~~i~~~~~---~~~~~~VLDlGcGtG~ls~~la~~g-~~~V~gvD~s~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~  127 (376)
T 3r0q_C           52 FNAVFQNKH---HFEGKTVLDVGTGSGILAIWSAQAG-ARKVYAVEATKMADHARALVKANNLDHIVEVIEGSVEDISLP  127 (376)
T ss_dssp             HHHHHTTTT---TTTTCEEEEESCTTTHHHHHHHHTT-CSEEEEEESSTTHHHHHHHHHHTTCTTTEEEEESCGGGCCCS
T ss_pred             HHHHHhccc---cCCCCEEEEeccCcCHHHHHHHhcC-CCEEEEEccHHHHHHHHHHHHHcCCCCeEEEEECchhhcCcC
Confidence            344444444   4567899999999999999999973 348999998666666654       2679999999987 555


Q ss_pred             c-ccEEEeec
Q 034578           81 N-ADAVFMKV   89 (90)
Q Consensus        81 ~-~D~i~l~~   89 (90)
                      + +|+|++..
T Consensus       128 ~~~D~Iv~~~  137 (376)
T 3r0q_C          128 EKVDVIISEW  137 (376)
T ss_dssp             SCEEEEEECC
T ss_pred             CcceEEEEcC
Confidence            5 99999743

>2vdv_E TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl-L-methionine, phosphorylation, M7G, spout MT, tRNA processing; HET: SAM; 2.30A {Saccharomyces cerevisiae} PDB: 2vdu_E

Probab=99.16  E-value=1.2e-10  Score=75.53  Aligned_cols=66  Identities=12%  Similarity=0.330  Sum_probs=53.8

Q ss_pred             CCCeEEEecCCchHHHHHHHHHCCCCeEEEeeh-HHHHHhCCC--------------CCCeeEEEecCCCC----CCc--
Q 034578           23 NIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDL-QHVIATAPT--------------HEGVSHVGGDMFDA----IPN--   81 (90)
Q Consensus        23 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~--------------~~rv~~~~~d~~~~----~p~--   81 (90)
                      +..+|||+|||+|.++..+++.+|..+++++|+ +.+++.+++              ..+++++.+|+++.    ++.  
T Consensus        49 ~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~nv~~~~~D~~~~l~~~~~~~~  128 (246)
T 2vdv_E           49 KKVTIADIGCGFGGLMIDLSPAFPEDLILGMEIRVQVTNYVEDRIIALRNNTASKHGFQNINVLRGNAMKFLPNFFEKGQ  128 (246)
T ss_dssp             CCEEEEEETCTTSHHHHHHHHHSTTSEEEEEESCHHHHHHHHHHHHHHHHTC-CCSTTTTEEEEECCTTSCGGGTSCTTC
T ss_pred             CCCEEEEEcCCCCHHHHHHHHhCCCCCEEEEEcCHHHHHHHHHHHHHHhhccccccCCCcEEEEeccHHHHHHHhccccc
Confidence            457899999999999999999999999999999 888876642              25799999999863    322  


Q ss_pred             ccEEEee
Q 034578           82 ADAVFMK   88 (90)
Q Consensus        82 ~D~i~l~   88 (90)
                      +|.|++.
T Consensus       129 ~d~v~~~  135 (246)
T 2vdv_E          129 LSKMFFC  135 (246)
T ss_dssp             EEEEEEE
T ss_pred             cCEEEEE
Confidence            6777653

>1ws6_A Methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.50A {Thermus thermophilus} SCOP: c.66.1.46

Probab=99.16  E-value=8.2e-12  Score=76.09  Aligned_cols=80  Identities=15%  Similarity=0.124  Sum_probs=60.0

Q ss_pred             hhhHHHHHhhcccCCCCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeeh-HHHHHhCCCC----C-CeeEEEecCCCCC
Q 034578            6 KITMKAFVSHYKVDGFNNIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDL-QHVIATAPTH----E-GVSHVGGDMFDAI   79 (90)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~----~-rv~~~~~d~~~~~   79 (90)
                      ..+.+.+++.+.. .+.+..+|||+|||+|.++..++++.+.  ++++|+ |.+++.++++    + +++++.+|+.+.+
T Consensus        25 ~~~~~~~~~~~~~-~~~~~~~vLD~GcG~G~~~~~l~~~~~~--v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~  101 (171)
T 1ws6_A           25 VRLRKALFDYLRL-RYPRRGRFLDPFAGSGAVGLEAASEGWE--AVLVEKDPEAVRLLKENVRRTGLGARVVALPVEVFL  101 (171)
T ss_dssp             HHHHHHHHHHHHH-HCTTCCEEEEETCSSCHHHHHHHHTTCE--EEEECCCHHHHHHHHHHHHHHTCCCEEECSCHHHHH
T ss_pred             HHHHHHHHHHHHh-hccCCCeEEEeCCCcCHHHHHHHHCCCe--EEEEeCCHHHHHHHHHHHHHcCCceEEEeccHHHHH
Confidence            3444555555441 0225679999999999999999998765  999999 9999988762    2 7999999987632


Q ss_pred             C-------cccEEEee
Q 034578           80 P-------NADAVFMK   88 (90)
Q Consensus        80 p-------~~D~i~l~   88 (90)
                      +       .+|+|++.
T Consensus       102 ~~~~~~~~~~D~i~~~  117 (171)
T 1ws6_A          102 PEAKAQGERFTVAFMA  117 (171)
T ss_dssp             HHHHHTTCCEEEEEEC
T ss_pred             HhhhccCCceEEEEEC
Confidence            2       48999876

>3ldu_A Putative methylase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE GTP; 1.70A {Clostridium difficile}

Probab=99.16  E-value=5.5e-11  Score=82.35  Aligned_cols=82  Identities=18%  Similarity=0.189  Sum_probs=65.9

Q ss_pred             chhhhHHHHHhhcccCCCCCCCeEEEecCCchHHHHHHHHHCCC------------------------------------
Q 034578            4 TTKITMKAFVSHYKVDGFNNIRSMVDVGGGTGTVLAEIVKSYPH------------------------------------   47 (90)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~------------------------------------   47 (90)
                      +.+.++..++....   +.+..+|||.+||+|.++++++....+                                    
T Consensus       179 l~e~lAa~ll~~~~---~~~~~~vlDp~CGSGt~lieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~  255 (385)
T 3ldu_A          179 IRETLAAGLIYLTP---WKAGRVLVDPMCGSGTILIEAAMIGINMAPGLNREFISEKWRTLDKKIWWDVRKDAFNKIDNE  255 (385)
T ss_dssp             CCHHHHHHHHHTSC---CCTTSCEEETTCTTCHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHSCCS
T ss_pred             CcHHHHHHHHHhhC---CCCCCeEEEcCCCCCHHHHHHHHHHhhhCCCcccccchhhcccCCHHHHHHHHHHHHHHhhcc
Confidence            45567777887777   566789999999999999999876432                                    


Q ss_pred             --CeEEEeeh-HHHHHhCCCC-------CCeeEEEecCCC-CCCc-ccEEEee
Q 034578           48 --IKGINFDL-QHVIATAPTH-------EGVSHVGGDMFD-AIPN-ADAVFMK   88 (90)
Q Consensus        48 --~~~~~~D~-p~~~~~a~~~-------~rv~~~~~d~~~-~~p~-~D~i~l~   88 (90)
                        .+++++|+ |.+++.|+++       +++++..+|+.+ +.+. +|+|+++
T Consensus       256 ~~~~V~GvDid~~ai~~Ar~Na~~~gl~~~i~~~~~D~~~l~~~~~~D~Iv~N  308 (385)
T 3ldu_A          256 SKFKIYGYDIDEESIDIARENAEIAGVDEYIEFNVGDATQFKSEDEFGFIITN  308 (385)
T ss_dssp             CCCCEEEEESCHHHHHHHHHHHHHHTCGGGEEEEECCGGGCCCSCBSCEEEEC
T ss_pred             CCceEEEEECCHHHHHHHHHHHHHcCCCCceEEEECChhhcCcCCCCcEEEEC
Confidence              67999999 9999998762       479999999988 3444 9999874

>1wy7_A Hypothetical protein PH1948; seven-stranded beta sheet, methyltransferase fold, structura genomics, transferase; HET: SAH; 2.20A {Pyrococcus horikoshii} SCOP: c.66.1.32

Probab=99.15  E-value=1e-10  Score=73.59  Aligned_cols=64  Identities=17%  Similarity=0.226  Sum_probs=53.2

Q ss_pred             CCCeEEEecCCchHHHHHHHHHCCCCeEEEeeh-HHHHHhCCCC----C-CeeEEEecCCCCCC-cccEEEee
Q 034578           23 NIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDL-QHVIATAPTH----E-GVSHVGGDMFDAIP-NADAVFMK   88 (90)
Q Consensus        23 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~----~-rv~~~~~d~~~~~p-~~D~i~l~   88 (90)
                      +..+|||+|||+|.++..+++.. ..+++++|+ |.+++.++++    + +++++.+|+.+ ++ .+|+|+++
T Consensus        49 ~~~~vlD~g~G~G~~~~~l~~~~-~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~d~~~-~~~~~D~v~~~  119 (207)
T 1wy7_A           49 EGKVVADLGAGTGVLSYGALLLG-AKEVICVEVDKEAVDVLIENLGEFKGKFKVFIGDVSE-FNSRVDIVIMN  119 (207)
T ss_dssp             TTCEEEEETCTTCHHHHHHHHTT-CSEEEEEESCHHHHHHHHHHTGGGTTSEEEEESCGGG-CCCCCSEEEEC
T ss_pred             CcCEEEEeeCCCCHHHHHHHHcC-CCEEEEEECCHHHHHHHHHHHHHcCCCEEEEECchHH-cCCCCCEEEEc
Confidence            46799999999999999999873 347999999 9999887652    2 79999999977 34 49999875

>1y8c_A S-adenosylmethionine-dependent methyltransferase; structural genomics, protein structure initiative, PSI; 2.50A {Clostridium acetobutylicum} SCOP: c.66.1.43

Probab=99.15  E-value=4.8e-11  Score=76.31  Aligned_cols=65  Identities=17%  Similarity=0.209  Sum_probs=54.8

Q ss_pred             CCCeEEEecCCchHHHHHHHHHCCCCeEEEeeh-HHHHHhCCCC-----CCeeEEEecCCC-CCCc-ccEEEeec
Q 034578           23 NIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDL-QHVIATAPTH-----EGVSHVGGDMFD-AIPN-ADAVFMKV   89 (90)
Q Consensus        23 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~-----~rv~~~~~d~~~-~~p~-~D~i~l~~   89 (90)
                      +..+|||+|||+|.++..+++.  ..+++++|+ |.+++.+++.     .+++++.+|+.+ +++. +|+|++..
T Consensus        37 ~~~~vLdiG~G~G~~~~~l~~~--~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~fD~v~~~~  109 (246)
T 1y8c_A           37 VFDDYLDLACGTGNLTENLCPK--FKNTWAVDLSQEMLSEAENKFRSQGLKPRLACQDISNLNINRKFDLITCCL  109 (246)
T ss_dssp             CTTEEEEETCTTSTTHHHHGGG--SSEEEEECSCHHHHHHHHHHHHHTTCCCEEECCCGGGCCCSCCEEEEEECT
T ss_pred             CCCeEEEeCCCCCHHHHHHHHC--CCcEEEEECCHHHHHHHHHHHhhcCCCeEEEecccccCCccCCceEEEEcC
Confidence            5679999999999999999998  468999999 9999888752     279999999977 4444 99999864

>2kw5_A SLR1183 protein; structural genomics, northeast structural genomics consortium (NESG), PSI-2, protein structure initiative, unknown function; NMR {Synechocystis} PDB: 3mer_A

Probab=99.15  E-value=1.6e-10  Score=72.34  Aligned_cols=61  Identities=13%  Similarity=0.113  Sum_probs=52.3

Q ss_pred             eEEEecCCchHHHHHHHHHCCCCeEEEeeh-HHHHHhCCCC-----CCeeEEEecCCC-CCC--cccEEEee
Q 034578           26 SMVDVGGGTGTVLAEIVKSYPHIKGINFDL-QHVIATAPTH-----EGVSHVGGDMFD-AIP--NADAVFMK   88 (90)
Q Consensus        26 ~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~-----~rv~~~~~d~~~-~~p--~~D~i~l~   88 (90)
                      +|||+|||+|.++..+++.  ..+++++|+ +.+++.+++.     .+++++.+|+.+ +++  .+|+|++.
T Consensus        32 ~vLdiGcG~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~  101 (202)
T 2kw5_A           32 KILCLAEGEGRNACFLASL--GYEVTAVDQSSVGLAKAKQLAQEKGVKITTVQSNLADFDIVADAWEGIVSI  101 (202)
T ss_dssp             EEEECCCSCTHHHHHHHTT--TCEEEEECSSHHHHHHHHHHHHHHTCCEEEECCBTTTBSCCTTTCSEEEEE
T ss_pred             CEEEECCCCCHhHHHHHhC--CCeEEEEECCHHHHHHHHHHHHhcCCceEEEEcChhhcCCCcCCccEEEEE
Confidence            9999999999999999987  569999999 9999888752     489999999987 554  29999875

>2yvl_A TRMI protein, hypothetical protein; tRNA, methyltransferase, S-adenosylmethionine, structural GE NPPSFA; HET: SAM; 2.20A {Aquifex aeolicus}

Probab=99.14  E-value=1.5e-10  Score=74.50  Aligned_cols=74  Identities=22%  Similarity=0.311  Sum_probs=60.1

Q ss_pred             HHHHhhcccCCCCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeeh-HHHHHhCCC-------CCCeeEEEecCCCCC-C
Q 034578           10 KAFVSHYKVDGFNNIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDL-QHVIATAPT-------HEGVSHVGGDMFDAI-P   80 (90)
Q Consensus        10 ~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~-------~~rv~~~~~d~~~~~-p   80 (90)
                      ..++..++   ..+..+|||+|||+|.++..+++.  ..+++++|+ |.+++.+++       .+++++..+|+.+.. +
T Consensus        81 ~~~~~~~~---~~~~~~vldiG~G~G~~~~~l~~~--~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~  155 (248)
T 2yvl_A           81 FYIALKLN---LNKEKRVLEFGTGSGALLAVLSEV--AGEVWTFEAVEEFYKTAQKNLKKFNLGKNVKFFNVDFKDAEVP  155 (248)
T ss_dssp             HHHHHHTT---CCTTCEEEEECCTTSHHHHHHHHH--SSEEEEECSCHHHHHHHHHHHHHTTCCTTEEEECSCTTTSCCC
T ss_pred             HHHHHhcC---CCCCCEEEEeCCCccHHHHHHHHh--CCEEEEEecCHHHHHHHHHHHHHcCCCCcEEEEEcChhhcccC
Confidence            34555555   456789999999999999999998  789999999 999888765       268999999998855 4


Q ss_pred             c--ccEEEee
Q 034578           81 N--ADAVFMK   88 (90)
Q Consensus        81 ~--~D~i~l~   88 (90)
                      .  +|+|++.
T Consensus       156 ~~~~D~v~~~  165 (248)
T 2yvl_A          156 EGIFHAAFVD  165 (248)
T ss_dssp             TTCBSEEEEC
T ss_pred             CCcccEEEEC
Confidence            3  9999864

>1uwv_A 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA modification, iron-sulfur cluster, RNA processing; 1.95A {Escherichia coli} SCOP: b.40.4.12 c.66.1.40 PDB: 2bh2_A*

Probab=99.14  E-value=7.7e-11  Score=82.47  Aligned_cols=79  Identities=8%  Similarity=0.154  Sum_probs=62.6

Q ss_pred             hhhhHHHHHhhcccCCCCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeeh-HHHHHhCCCC------CCeeEEEecCCC
Q 034578            5 TKITMKAFVSHYKVDGFNNIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDL-QHVIATAPTH------EGVSHVGGDMFD   77 (90)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~------~rv~~~~~d~~~   77 (90)
                      ++.+.+.+++.++   ..+..+|||+|||+|.++..+++.  ..+++++|+ +.+++.|+++      .+++|+.+|+.+
T Consensus       271 ~e~l~~~~~~~l~---~~~~~~VLDlgcG~G~~~~~la~~--~~~V~gvD~s~~al~~A~~n~~~~~~~~v~f~~~d~~~  345 (433)
T 1uwv_A          271 NQKMVARALEWLD---VQPEDRVLDLFCGMGNFTLPLATQ--AASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEE  345 (433)
T ss_dssp             HHHHHHHHHHHHT---CCTTCEEEEESCTTTTTHHHHHTT--SSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCTTS
T ss_pred             HHHHHHHHHHhhc---CCCCCEEEECCCCCCHHHHHHHhh--CCEEEEEeCCHHHHHHHHHHHHHcCCCceEEEECCHHH
Confidence            3445566666665   455679999999999999999987  678999999 9999988752      489999999987


Q ss_pred             CCC-------cccEEEee
Q 034578           78 AIP-------NADAVFMK   88 (90)
Q Consensus        78 ~~p-------~~D~i~l~   88 (90)
                      .++       .+|+|++.
T Consensus       346 ~l~~~~~~~~~fD~Vv~d  363 (433)
T 1uwv_A          346 DVTKQPWAKNGFDKVLLD  363 (433)
T ss_dssp             CCSSSGGGTTCCSEEEEC
T ss_pred             HhhhhhhhcCCCCEEEEC
Confidence            322       38999864

>1ri5_A MRNA capping enzyme; methyltransferase, M7G, messenger RNA CAP, structural genomics, PSI, protein structure initiative; 2.10A {Encephalitozoon cuniculi} SCOP: c.66.1.34 PDB: 1ri2_A* 1ri3_A* 1ri1_A* 1ri4_A 1z3c_A* 2hv9_A*

Probab=99.14  E-value=8.1e-11  Score=77.30  Aligned_cols=67  Identities=18%  Similarity=0.166  Sum_probs=55.1

Q ss_pred             CCCCeEEEecCCchHHHHHHHHHCCCCeEEEeeh-HHHHHhCCCC-------CCeeEEEecCCC-CC-C-c-ccEEEeec
Q 034578           22 NNIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDL-QHVIATAPTH-------EGVSHVGGDMFD-AI-P-N-ADAVFMKV   89 (90)
Q Consensus        22 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~-------~rv~~~~~d~~~-~~-p-~-~D~i~l~~   89 (90)
                      .+..+|||+|||+|.++..+++. +..+++++|+ +.+++.+++.       .+++++.+|+.+ ++ + . +|+|++..
T Consensus        63 ~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~v~~~~  141 (298)
T 1ri5_A           63 KRGDSVLDLGCGKGGDLLKYERA-GIGEYYGVDIAEVSINDARVRARNMKRRFKVFFRAQDSYGRHMDLGKEFDVISSQF  141 (298)
T ss_dssp             CTTCEEEEETCTTTTTHHHHHHH-TCSEEEEEESCHHHHHHHHHHHHTSCCSSEEEEEESCTTTSCCCCSSCEEEEEEES
T ss_pred             CCCCeEEEECCCCCHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHhcCCCccEEEEECCccccccCCCCCcCEEEECc
Confidence            45679999999999999998876 5669999999 9999887652       479999999987 55 3 3 99999864

>3cc8_A Putative methyltransferase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS transferase; 1.64A {Bacillus cereus}

Probab=99.14  E-value=2.2e-10  Score=72.40  Aligned_cols=76  Identities=17%  Similarity=0.209  Sum_probs=58.5

Q ss_pred             hHHHHHhhcccCCCCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeeh-HHHHHhCCCCCCeeEEEecCCC---CCC-c-
Q 034578            8 TMKAFVSHYKVDGFNNIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDL-QHVIATAPTHEGVSHVGGDMFD---AIP-N-   81 (90)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~~rv~~~~~d~~~---~~p-~-   81 (90)
                      ..+.+++.++    .+..+|||+|||+|.++..+++. + .+++++|+ +.+++.+++.. .+++.+|+.+   +++ . 
T Consensus        21 ~~~~l~~~~~----~~~~~vLdiG~G~G~~~~~l~~~-~-~~~~~~D~~~~~~~~~~~~~-~~~~~~d~~~~~~~~~~~~   93 (230)
T 3cc8_A           21 VNPNLLKHIK----KEWKEVLDIGCSSGALGAAIKEN-G-TRVSGIEAFPEAAEQAKEKL-DHVVLGDIETMDMPYEEEQ   93 (230)
T ss_dssp             CCHHHHTTCC----TTCSEEEEETCTTSHHHHHHHTT-T-CEEEEEESSHHHHHHHHTTS-SEEEESCTTTCCCCSCTTC
T ss_pred             HHHHHHHHhc----cCCCcEEEeCCCCCHHHHHHHhc-C-CeEEEEeCCHHHHHHHHHhC-CcEEEcchhhcCCCCCCCc
Confidence            3445555543    25679999999999999999998 4 89999999 99998887653 3788899875   333 2 


Q ss_pred             ccEEEeecC
Q 034578           82 ADAVFMKVA   90 (90)
Q Consensus        82 ~D~i~l~~v   90 (90)
                      +|+|++.++
T Consensus        94 fD~v~~~~~  102 (230)
T 3cc8_A           94 FDCVIFGDV  102 (230)
T ss_dssp             EEEEEEESC
T ss_pred             cCEEEECCh
Confidence            899998753

>3ldg_A Putative uncharacterized protein SMU.472; YPSC, methyltransferase, transferase; HET: SAH; 1.96A {Streptococcus mutans}

Probab=99.13  E-value=1.1e-10  Score=80.89  Aligned_cols=83  Identities=14%  Similarity=0.102  Sum_probs=66.8

Q ss_pred             cchhhhHHHHHhhcccCCCCCCCeEEEecCCchHHHHHHHHHCCC-----------------------------------
Q 034578            3 CTTKITMKAFVSHYKVDGFNNIRSMVDVGGGTGTVLAEIVKSYPH-----------------------------------   47 (90)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~-----------------------------------   47 (90)
                      .+.+.++..++....   +.+...++|.+||+|.++++.+....+                                   
T Consensus       177 pl~e~LAaall~l~~---~~~~~~llDp~CGSGt~lIEAa~~a~~iapg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~  253 (384)
T 3ldg_A          177 PIKENMAAAIILLSN---WFPDKPFVDPTCGSGTFCIEAAMIGMNIAPGFNRDFAFEEWPWVDEALVTRVRNEADEQADY  253 (384)
T ss_dssp             CCCHHHHHHHHHHTT---CCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCGGGGCTTSCHHHHHHHHHHHHHHCCT
T ss_pred             CCcHHHHHHHHHHhC---CCCCCeEEEeCCcCCHHHHHHHHHhcCcCCCccccchhhhhccCCHHHHHHHHHHHHHhhhc
Confidence            345667888888777   566789999999999999998876543                                   


Q ss_pred             ---CeEEEeeh-HHHHHhCCC-------CCCeeEEEecCCC-CCCc-ccEEEee
Q 034578           48 ---IKGINFDL-QHVIATAPT-------HEGVSHVGGDMFD-AIPN-ADAVFMK   88 (90)
Q Consensus        48 ---~~~~~~D~-p~~~~~a~~-------~~rv~~~~~d~~~-~~p~-~D~i~l~   88 (90)
                         .+++++|+ |.+++.|++       .+++++..+|+++ +.+. +|+|+++
T Consensus       254 ~~~~~v~GvDid~~al~~Ar~Na~~~gl~~~I~~~~~D~~~l~~~~~fD~Iv~N  307 (384)
T 3ldg_A          254 DIQLDISGFDFDGRMVEIARKNAREVGLEDVVKLKQMRLQDFKTNKINGVLISN  307 (384)
T ss_dssp             TCCCCEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCGGGCCCCCCSCEEEEC
T ss_pred             cCCceEEEEECCHHHHHHHHHHHHHcCCCCceEEEECChHHCCccCCcCEEEEC
Confidence               57999999 999998876       2579999999988 3444 9999875

>2gs9_A Hypothetical protein TT1324; methyl transferase, structural genomics, NPPSFA, national PR protein structural and functional analyses; HET: SAH; 2.60A {Thermus thermophilus}

Probab=99.13  E-value=1e-10  Score=73.66  Aligned_cols=63  Identities=19%  Similarity=0.266  Sum_probs=52.7

Q ss_pred             CCCeEEEecCCchHHHHHHHHHCCCC-eEEEeeh-HHHHHhCCCC-CCeeEEEecCCC-CCCc--ccEEEeecC
Q 034578           23 NIRSMVDVGGGTGTVLAEIVKSYPHI-KGINFDL-QHVIATAPTH-EGVSHVGGDMFD-AIPN--ADAVFMKVA   90 (90)
Q Consensus        23 ~~~~vlDvG~G~G~~~~~l~~~~p~~-~~~~~D~-p~~~~~a~~~-~rv~~~~~d~~~-~~p~--~D~i~l~~v   90 (90)
                      +..+|||+|||+|.++..+     .. +++++|+ +.+++.++++ .+++++.+|+.+ +++.  +|+|++.++
T Consensus        36 ~~~~vLdiG~G~G~~~~~l-----~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~  104 (211)
T 2gs9_A           36 PGESLLEVGAGTGYWLRRL-----PYPQKVGVEPSEAMLAVGRRRAPEATWVRAWGEALPFPGESFDVVLLFTT  104 (211)
T ss_dssp             CCSEEEEETCTTCHHHHHC-----CCSEEEEECCCHHHHHHHHHHCTTSEEECCCTTSCCSCSSCEEEEEEESC
T ss_pred             CCCeEEEECCCCCHhHHhC-----CCCeEEEEeCCHHHHHHHHHhCCCcEEEEcccccCCCCCCcEEEEEEcCh
Confidence            5679999999999999887     44 8999999 9999888764 689999999977 5543  999998753

>2pbf_A Protein-L-isoaspartate O-methyltransferase beta-A methyltransferase; protein repair, isoaspartyl formation, P. falciparum; HET: SAH; 2.00A {Plasmodium falciparum}

Probab=99.13  E-value=1.2e-10  Score=74.33  Aligned_cols=68  Identities=12%  Similarity=0.218  Sum_probs=56.5

Q ss_pred             CCCCCeEEEecCCchHHHHHHHHHC-----CCCeEEEeeh-HHHHHhCCCC-----------CCeeEEEecCCCCC----
Q 034578           21 FNNIRSMVDVGGGTGTVLAEIVKSY-----PHIKGINFDL-QHVIATAPTH-----------EGVSHVGGDMFDAI----   79 (90)
Q Consensus        21 ~~~~~~vlDvG~G~G~~~~~l~~~~-----p~~~~~~~D~-p~~~~~a~~~-----------~rv~~~~~d~~~~~----   79 (90)
                      ..+..+|||+|||+|.++..+++..     |..+++++|+ |.+++.++++           .+++++.+|+.+..    
T Consensus        78 ~~~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~  157 (227)
T 2pbf_A           78 LKPGSRAIDVGSGSGYLTVCMAIKMNVLENKNSYVIGLERVKDLVNFSLENIKRDKPELLKIDNFKIIHKNIYQVNEEEK  157 (227)
T ss_dssp             SCTTCEEEEESCTTSHHHHHHHHHTTTTTCTTCEEEEEESCHHHHHHHHHHHHHHCGGGGSSTTEEEEECCGGGCCHHHH
T ss_pred             CCCCCEEEEECCCCCHHHHHHHHHhcccCCCCCEEEEEeCCHHHHHHHHHHHHHcCccccccCCEEEEECChHhcccccC
Confidence            4456899999999999999999986     6789999999 9998887652           47999999998743    


Q ss_pred             C---cccEEEee
Q 034578           80 P---NADAVFMK   88 (90)
Q Consensus        80 p---~~D~i~l~   88 (90)
                      +   .||+|++.
T Consensus       158 ~~~~~fD~I~~~  169 (227)
T 2pbf_A          158 KELGLFDAIHVG  169 (227)
T ss_dssp             HHHCCEEEEEEC
T ss_pred             ccCCCcCEEEEC
Confidence            2   38999875

>1ej0_A FTSJ; methyltransferase, adoMet, adenosyl methionine, heat shock proteins, 23S ribosomal RNA; HET: SAM; 1.50A {Escherichia coli} SCOP: c.66.1.2 PDB: 1eiz_A*

Probab=99.13  E-value=1.7e-10  Score=69.94  Aligned_cols=73  Identities=22%  Similarity=0.277  Sum_probs=57.2

Q ss_pred             HHHHHhhcccCCCCCCCeEEEecCCchHHHHHHHHHC-CCCeEEEeeh-HHHHHhCCCCCCeeEEEecCCC-C-------
Q 034578            9 MKAFVSHYKVDGFNNIRSMVDVGGGTGTVLAEIVKSY-PHIKGINFDL-QHVIATAPTHEGVSHVGGDMFD-A-------   78 (90)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~-p~~~~~~~D~-p~~~~~a~~~~rv~~~~~d~~~-~-------   78 (90)
                      ...+++.+..  ..+..+|||+|||+|.++..+++.+ |+.+++++|+ + +++    ..+++++.+|+.+ +       
T Consensus        10 l~~~~~~~~~--~~~~~~vLd~G~G~G~~~~~l~~~~~~~~~v~~~D~~~-~~~----~~~~~~~~~d~~~~~~~~~~~~   82 (180)
T 1ej0_A           10 LDEIQQSDKL--FKPGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLP-MDP----IVGVDFLQGDFRDELVMKALLE   82 (180)
T ss_dssp             HHHHHHHHCC--CCTTCEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSC-CCC----CTTEEEEESCTTSHHHHHHHHH
T ss_pred             HHHHHHHhCC--CCCCCeEEEeCCCCCHHHHHHHHHhCCCCeEEEEECcc-ccc----cCcEEEEEcccccchhhhhhhc
Confidence            4455666552  4566799999999999999999995 7799999999 6 543    2689999999987 4       


Q ss_pred             -CC--cccEEEee
Q 034578           79 -IP--NADAVFMK   88 (90)
Q Consensus        79 -~p--~~D~i~l~   88 (90)
                       ++  .+|+|++.
T Consensus        83 ~~~~~~~D~i~~~   95 (180)
T 1ej0_A           83 RVGDSKVQVVMSD   95 (180)
T ss_dssp             HHTTCCEEEEEEC
T ss_pred             cCCCCceeEEEEC
Confidence             54  29999974

>2fpo_A Methylase YHHF; structural genomics, putative methyltransferase, PSI, protei structure initiative; HET: MSE; 2.05A {Escherichia coli} SCOP: c.66.1.46

Probab=99.13  E-value=3.6e-11  Score=76.20  Aligned_cols=79  Identities=13%  Similarity=0.133  Sum_probs=58.6

Q ss_pred             hhHHHHHhhcccCCCCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeeh-HHHHHhCCCC------CCeeEEEecCCC--
Q 034578            7 ITMKAFVSHYKVDGFNNIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDL-QHVIATAPTH------EGVSHVGGDMFD--   77 (90)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~------~rv~~~~~d~~~--   77 (90)
                      .+.+.+++.+..  ..+..+|||+|||+|.++..++++.. .+++++|+ |.+++.++++      ++++++.+|+.+  
T Consensus        40 ~~~~~l~~~l~~--~~~~~~vLDlgcG~G~~~~~l~~~~~-~~V~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~D~~~~~  116 (202)
T 2fpo_A           40 RVRETLFNWLAP--VIVDAQCLDCFAGSGALGLEALSRYA-AGATLIEMDRAVSQQLIKNLATLKAGNARVVNSNAMSFL  116 (202)
T ss_dssp             HHHHHHHHHHHH--HHTTCEEEETTCTTCHHHHHHHHTTC-SEEEEECSCHHHHHHHHHHHHHTTCCSEEEECSCHHHHH
T ss_pred             HHHHHHHHHHHh--hcCCCeEEEeCCCcCHHHHHHHhcCC-CEEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHHH
Confidence            344455554431  11457999999999999999887753 48999999 9999988752      489999999876  


Q ss_pred             CC-C-cccEEEee
Q 034578           78 AI-P-NADAVFMK   88 (90)
Q Consensus        78 ~~-p-~~D~i~l~   88 (90)
                      +. + .+|+|++.
T Consensus       117 ~~~~~~fD~V~~~  129 (202)
T 2fpo_A          117 AQKGTPHNIVFVD  129 (202)
T ss_dssp             SSCCCCEEEEEEC
T ss_pred             hhcCCCCCEEEEC
Confidence            22 2 39999875

>3tqs_A Ribosomal RNA small subunit methyltransferase A; protein synthesis; 1.98A {Coxiella burnetii} SCOP: c.66.1.0

Probab=99.12  E-value=7.4e-11  Score=77.84  Aligned_cols=69  Identities=12%  Similarity=0.256  Sum_probs=57.9

Q ss_pred             hhhHHHHHhhcccCCCCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeeh-HHHHHhCCC----CCCeeEEEecCCC-CC
Q 034578            6 KITMKAFVSHYKVDGFNNIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDL-QHVIATAPT----HEGVSHVGGDMFD-AI   79 (90)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~----~~rv~~~~~d~~~-~~   79 (90)
                      ..+++.+++.++   ..+..+|||||||+|.++..++++.  .+++++|+ +.+++.+++    .++++++.+|+++ ++
T Consensus        15 ~~i~~~iv~~~~---~~~~~~VLEIG~G~G~lt~~La~~~--~~V~avEid~~~~~~~~~~~~~~~~v~~i~~D~~~~~~   89 (255)
T 3tqs_A           15 SFVLQKIVSAIH---PQKTDTLVEIGPGRGALTDYLLTEC--DNLALVEIDRDLVAFLQKKYNQQKNITIYQNDALQFDF   89 (255)
T ss_dssp             HHHHHHHHHHHC---CCTTCEEEEECCTTTTTHHHHTTTS--SEEEEEECCHHHHHHHHHHHTTCTTEEEEESCTTTCCG
T ss_pred             HHHHHHHHHhcC---CCCcCEEEEEcccccHHHHHHHHhC--CEEEEEECCHHHHHHHHHHHhhCCCcEEEEcchHhCCH
Confidence            345677888777   5667899999999999999999975  68999999 999988765    3789999999988 44

>3c3p_A Methyltransferase; NP_951602.1, structural genomics, joint for structural genomics, JCSG, protein structure initiative transferase; 1.90A {Geobacter sulfurreducens pca}

Probab=99.12  E-value=4.6e-11  Score=75.62  Aligned_cols=66  Identities=20%  Similarity=0.214  Sum_probs=55.3

Q ss_pred             CCCeEEEecCCchHHHHHHHHHCC-CCeEEEeeh-HHHHHhCCC-------CCCeeEEEecCCC--C-CCcccEEEee
Q 034578           23 NIRSMVDVGGGTGTVLAEIVKSYP-HIKGINFDL-QHVIATAPT-------HEGVSHVGGDMFD--A-IPNADAVFMK   88 (90)
Q Consensus        23 ~~~~vlDvG~G~G~~~~~l~~~~p-~~~~~~~D~-p~~~~~a~~-------~~rv~~~~~d~~~--~-~p~~D~i~l~   88 (90)
                      +..+|||+|||+|..+..+++..| ..+++++|+ |.+++.+++       .++++++.+|..+  + ++.+|+|++.
T Consensus        56 ~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~  133 (210)
T 3c3p_A           56 QPQLVVVPGDGLGCASWWFARAISISSRVVMIDPDRDNVEHARRMLHDNGLIDRVELQVGDPLGIAAGQRDIDILFMD  133 (210)
T ss_dssp             CCSEEEEESCGGGHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHSGGGGEEEEESCHHHHHTTCCSEEEEEEE
T ss_pred             CCCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHCCCCceEEEEEecHHHHhccCCCCCEEEEc
Confidence            457999999999999999999988 889999999 999988875       2579999999865  2 2228999864

>3r3h_A O-methyltransferase, SAM-dependent; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.65A {Legionella pneumophila subsp}

Probab=99.12  E-value=1e-11  Score=80.95  Aligned_cols=67  Identities=16%  Similarity=0.244  Sum_probs=56.0

Q ss_pred             CCCCeEEEecCCchHHHHHHHHHCC-CCeEEEeeh-HHHHHhCCC-------CCCeeEEEecCCCC---C------Cccc
Q 034578           22 NNIRSMVDVGGGTGTVLAEIVKSYP-HIKGINFDL-QHVIATAPT-------HEGVSHVGGDMFDA---I------PNAD   83 (90)
Q Consensus        22 ~~~~~vlDvG~G~G~~~~~l~~~~p-~~~~~~~D~-p~~~~~a~~-------~~rv~~~~~d~~~~---~------p~~D   83 (90)
                      .+..+|||+|||+|..+..+++..| +.+++++|+ |.+++.|++       .++++++.+|..+.   +      ..||
T Consensus        59 ~~~~~VLDiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~~~~~~~~~~fD  138 (242)
T 3r3h_A           59 TRAKKVLELGTFTGYSALAMSLALPDDGQVITCDINEGWTKHAHPYWREAKQEHKIKLRLGPALDTLHSLLNEGGEHQFD  138 (242)
T ss_dssp             HTCSEEEEEESCCSHHHHHHHHTSCTTCEEEEEECCCSSCCCSHHHHHHTTCTTTEEEEESCHHHHHHHHHHHHCSSCEE
T ss_pred             cCcCEEEEeeCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHhhccCCCCEe
Confidence            3567999999999999999999986 899999999 888877765       25899999998762   2      2399


Q ss_pred             EEEee
Q 034578           84 AVFMK   88 (90)
Q Consensus        84 ~i~l~   88 (90)
                      +|++.
T Consensus       139 ~V~~d  143 (242)
T 3r3h_A          139 FIFID  143 (242)
T ss_dssp             EEEEE
T ss_pred             EEEEc
Confidence            99874

>2hnk_A SAM-dependent O-methyltransferase; modified rossman fold; HET: SAH; 2.30A {Leptospira interrogans}

Probab=99.12  E-value=2.2e-11  Score=78.59  Aligned_cols=56  Identities=14%  Similarity=0.163  Sum_probs=48.5

Q ss_pred             CCCCeEEEecCCchHHHHHHHHHCC-CCeEEEeeh-HHHHHhCCCC-------CCeeEEEecCCC
Q 034578           22 NNIRSMVDVGGGTGTVLAEIVKSYP-HIKGINFDL-QHVIATAPTH-------EGVSHVGGDMFD   77 (90)
Q Consensus        22 ~~~~~vlDvG~G~G~~~~~l~~~~p-~~~~~~~D~-p~~~~~a~~~-------~rv~~~~~d~~~   77 (90)
                      .+..+|||+|||+|..+..+++..| ..+++++|+ |.+++.++++       ++++++.+|+.+
T Consensus        59 ~~~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~d~~~  123 (239)
T 2hnk_A           59 SGAKRIIEIGTFTGYSSLCFASALPEDGKILCCDVSEEWTNVARKYWKENGLENKIFLKLGSALE  123 (239)
T ss_dssp             HTCSEEEEECCTTCHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHH
T ss_pred             hCcCEEEEEeCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCEEEEECCHHH
Confidence            3567999999999999999999987 789999999 9998887652       469999999865

>4df3_A Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; NADP rossmann superfamily, S-adenosyl-L-M (SAM) binding, nucleolus; HET: SAM; 1.73A {Aeropyrum pernix}

Probab=99.11  E-value=4.3e-10  Score=73.47  Aligned_cols=81  Identities=11%  Similarity=0.085  Sum_probs=63.2

Q ss_pred             hhHHHHHhhcccCCCCCCCeEEEecCCchHHHHHHHHH-CCCCeEEEeeh-HHHHHhCC----CCCCeeEEEecCCCC--
Q 034578            7 ITMKAFVSHYKVDGFNNIRSMVDVGGGTGTVLAEIVKS-YPHIKGINFDL-QHVIATAP----THEGVSHVGGDMFDA--   78 (90)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~-~p~~~~~~~D~-p~~~~~a~----~~~rv~~~~~d~~~~--   78 (90)
                      .++..++..++...+++..+|||+|||+|.++..+++. .|.-+++++|+ |.+++.++    +.+++..+.+|...+  
T Consensus        61 klaa~i~~gl~~l~ikpG~~VldlG~G~G~~~~~la~~VG~~G~V~avD~s~~~~~~l~~~a~~~~ni~~V~~d~~~p~~  140 (233)
T 4df3_A           61 KLAAALLKGLIELPVKEGDRILYLGIASGTTASHMSDIIGPRGRIYGVEFAPRVMRDLLTVVRDRRNIFPILGDARFPEK  140 (233)
T ss_dssp             HHHHHHHTTCSCCCCCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEECCHHHHHHHHHHSTTCTTEEEEESCTTCGGG
T ss_pred             HHHHHHHhchhhcCCCCCCEEEEecCcCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhHhhcCeeEEEEeccCccc
Confidence            45777777665322567899999999999999999998 59999999999 98887654    357899999988662  


Q ss_pred             --C-Cc-ccEEEe
Q 034578           79 --I-PN-ADAVFM   87 (90)
Q Consensus        79 --~-p~-~D~i~l   87 (90)
                        . .. +|+|++
T Consensus       141 ~~~~~~~vDvVf~  153 (233)
T 4df3_A          141 YRHLVEGVDGLYA  153 (233)
T ss_dssp             GTTTCCCEEEEEE
T ss_pred             cccccceEEEEEE
Confidence              1 12 788775

>3p2e_A 16S rRNA methylase; methyltransferase, transferase, NPMA; HET: SAH; 1.68A {Escherichia coli} PDB: 3p2i_A 3p2k_A* 3pb3_A* 3mte_A*

Probab=99.11  E-value=1.1e-10  Score=75.41  Aligned_cols=55  Identities=16%  Similarity=0.152  Sum_probs=45.8

Q ss_pred             CCCeEEEecCCchHHHHHHHHHCCCCeEEEeeh-H-HHHHhC---CCC------CCeeEEEecCCC
Q 034578           23 NIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDL-Q-HVIATA---PTH------EGVSHVGGDMFD   77 (90)
Q Consensus        23 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-p-~~~~~a---~~~------~rv~~~~~d~~~   77 (90)
                      +..+|||||||+|.++..++++.|..+++++|+ | .+++.|   +++      .+++++.+|..+
T Consensus        24 ~~~~vLDiGCG~G~~~~~la~~~~~~~v~GvD~s~~~ml~~A~~A~~~~~~~~~~~v~~~~~d~~~   89 (225)
T 3p2e_A           24 FDRVHIDLGTGDGRNIYKLAINDQNTFYIGIDPVKENLFDISKKIIKKPSKGGLSNVVFVIAAAES   89 (225)
T ss_dssp             CSEEEEEETCTTSHHHHHHHHTCTTEEEEEECSCCGGGHHHHHHHTSCGGGTCCSSEEEECCBTTB
T ss_pred             CCCEEEEEeccCcHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHHHHHcCCCCeEEEEcCHHH
Confidence            567999999999999999999999999999998 4 455544   542      579999999865

>1iy9_A Spermidine synthase; rossmann fold, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacillus subtilis} SCOP: c.66.1.17

Probab=99.11  E-value=7.9e-11  Score=78.15  Aligned_cols=66  Identities=29%  Similarity=0.338  Sum_probs=55.7

Q ss_pred             CCCeEEEecCCchHHHHHHHHHCCCCeEEEeeh-HHHHHhCCC----------CCCeeEEEecCCCC---CCc-ccEEEe
Q 034578           23 NIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDL-QHVIATAPT----------HEGVSHVGGDMFDA---IPN-ADAVFM   87 (90)
Q Consensus        23 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~----------~~rv~~~~~d~~~~---~p~-~D~i~l   87 (90)
                      .+.+|||||||+|.++.++++..|..+++++|+ |.+++.+++          .+|++++.+|..+.   .+. ||+|++
T Consensus        75 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vEid~~~v~~ar~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~fD~Ii~  154 (275)
T 1iy9_A           75 NPEHVLVVGGGDGGVIREILKHPSVKKATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQVDDGFMHIAKSENQYDVIMV  154 (275)
T ss_dssp             SCCEEEEESCTTCHHHHHHTTCTTCSEEEEEESCHHHHHHHHHHCHHHHTTTTSTTEEEEESCSHHHHHTCCSCEEEEEE
T ss_pred             CCCEEEEECCchHHHHHHHHhCCCCceEEEEECCHHHHHHHHHHhHhhccccCCCceEEEECcHHHHHhhCCCCeeEEEE
Confidence            468999999999999999999878889999999 999888764          36899999998762   233 999987


Q ss_pred             e
Q 034578           88 K   88 (90)
Q Consensus        88 ~   88 (90)
                      .
T Consensus       155 d  155 (275)
T 1iy9_A          155 D  155 (275)
T ss_dssp             S
T ss_pred             C
Confidence            4

>2nxc_A L11 mtase, ribosomal protein L11 methyltransferase; transferase S-adenosly-L-methionine dependent methyltransfer posttranslational modification; 1.59A {Thermus thermophilus} SCOP: c.66.1.39 PDB: 1ufk_A 2nxe_A* 2nxj_A 2nxn_A 2zbp_A* 2zbq_A* 2zbr_A* 3cjq_A* 3cjr_A* 3cju_A* 3egv_A* 3cjt_A*

Probab=99.10  E-value=8.2e-11  Score=77.01  Aligned_cols=64  Identities=20%  Similarity=0.299  Sum_probs=52.7

Q ss_pred             CCCeEEEecCCchHHHHHHHHHCCCCeEEEeeh-HHHHHhCCCC-----CCeeEEEecCCCCCC--cccEEEee
Q 034578           23 NIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDL-QHVIATAPTH-----EGVSHVGGDMFDAIP--NADAVFMK   88 (90)
Q Consensus        23 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~-----~rv~~~~~d~~~~~p--~~D~i~l~   88 (90)
                      +..+|||+|||+|.++..+++..+  +++++|+ |.+++.++++     -.+++..+|+.+.++  .+|+|+.+
T Consensus       120 ~~~~VLDiGcG~G~l~~~la~~g~--~v~gvDi~~~~v~~a~~n~~~~~~~v~~~~~d~~~~~~~~~fD~Vv~n  191 (254)
T 2nxc_A          120 PGDKVLDLGTGSGVLAIAAEKLGG--KALGVDIDPMVLPQAEANAKRNGVRPRFLEGSLEAALPFGPFDLLVAN  191 (254)
T ss_dssp             TTCEEEEETCTTSHHHHHHHHTTC--EEEEEESCGGGHHHHHHHHHHTTCCCEEEESCHHHHGGGCCEEEEEEE
T ss_pred             CCCEEEEecCCCcHHHHHHHHhCC--eEEEEECCHHHHHHHHHHHHHcCCcEEEEECChhhcCcCCCCCEEEEC
Confidence            567999999999999999998765  9999999 9999888752     128999999876443  39999875

>1xj5_A Spermidine synthase 1; structural genomics, protein structure initiative, CESG, AT1G23820, putrescine aminopropyl transferase, SPDS1; 2.70A {Arabidopsis thaliana} SCOP: c.66.1.17 PDB: 2q41_A

Probab=99.10  E-value=9.3e-11  Score=79.96  Aligned_cols=67  Identities=24%  Similarity=0.316  Sum_probs=56.4

Q ss_pred             CCCCeEEEecCCchHHHHHHHHHCCCCeEEEeeh-HHHHHhCCC----------CCCeeEEEecCCC---CCC--cccEE
Q 034578           22 NNIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDL-QHVIATAPT----------HEGVSHVGGDMFD---AIP--NADAV   85 (90)
Q Consensus        22 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~----------~~rv~~~~~d~~~---~~p--~~D~i   85 (90)
                      ..+.+|||||||+|.++..+++..|..+++++|+ |.+++.|++          .+|++++.+|+.+   ..+  .||+|
T Consensus       119 ~~~~~VLdIG~G~G~~a~~la~~~~~~~V~~VDis~~~l~~Ar~~~~~~~~gl~~~rv~~~~~D~~~~l~~~~~~~fDlI  198 (334)
T 1xj5_A          119 PNPKKVLVIGGGDGGVLREVARHASIEQIDMCEIDKMVVDVSKQFFPDVAIGYEDPRVNLVIGDGVAFLKNAAEGSYDAV  198 (334)
T ss_dssp             SCCCEEEEETCSSSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGSTTEEEEESCHHHHHHTSCTTCEEEE
T ss_pred             CCCCEEEEECCCccHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhhccccCCCcEEEEECCHHHHHHhccCCCccEE
Confidence            3568999999999999999999888899999999 999988764          2589999999865   233  39999


Q ss_pred             Eee
Q 034578           86 FMK   88 (90)
Q Consensus        86 ~l~   88 (90)
                      ++.
T Consensus       199 i~d  201 (334)
T 1xj5_A          199 IVD  201 (334)
T ss_dssp             EEC
T ss_pred             EEC
Confidence            974

>3frh_A 16S rRNA methylase; methyltransferase domain, helical N-terminal domain, methyltransferase, plasmid, transferase; HET: SAH; 1.20A {Escherichia coli} PDB: 3fri_A* 3b89_A*

Probab=99.09  E-value=2.6e-10  Score=75.15  Aligned_cols=64  Identities=11%  Similarity=0.043  Sum_probs=55.4

Q ss_pred             CCCCeEEEecCCchHHHHHHHHHCCCCeEEEeeh-HHHHHhCCC-----CCCeeEEEecCCC-CCCc-ccEEEee
Q 034578           22 NNIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDL-QHVIATAPT-----HEGVSHVGGDMFD-AIPN-ADAVFMK   88 (90)
Q Consensus        22 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~-----~~rv~~~~~d~~~-~~p~-~D~i~l~   88 (90)
                      ..+.+|||||||+|-++..+.   |..+++++|+ +.+++.+++     ..+.++..+|+.. ++|+ +|++++.
T Consensus       104 ~~p~~VLDlGCG~gpLal~~~---~~~~y~a~DId~~~i~~ar~~~~~~g~~~~~~v~D~~~~~~~~~~DvvLll  175 (253)
T 3frh_A          104 ETPRRVLDIACGLNPLALYER---GIASVWGCDIHQGLGDVITPFAREKDWDFTFALQDVLCAPPAEAGDLALIF  175 (253)
T ss_dssp             CCCSEEEEETCTTTHHHHHHT---TCSEEEEEESBHHHHHHHHHHHHHTTCEEEEEECCTTTSCCCCBCSEEEEE
T ss_pred             CCCCeEEEecCCccHHHHHhc---cCCeEEEEeCCHHHHHHHHHHHHhcCCCceEEEeecccCCCCCCcchHHHH
Confidence            457899999999999999988   8999999999 999998876     4678999999998 4555 9999775

>2pt6_A Spermidine synthase; transferase, structural genomics consor SGC,dcadoMet complex; HET: S4M 1PG; 2.00A {Plasmodium falciparum} PDB: 2pss_A* 2pt9_A*

Probab=99.09  E-value=7.6e-11  Score=79.87  Aligned_cols=66  Identities=20%  Similarity=0.273  Sum_probs=55.5

Q ss_pred             CCCeEEEecCCchHHHHHHHHHCCCCeEEEeeh-HHHHHhCCC----------CCCeeEEEecCCCC---CCc-ccEEEe
Q 034578           23 NIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDL-QHVIATAPT----------HEGVSHVGGDMFDA---IPN-ADAVFM   87 (90)
Q Consensus        23 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~----------~~rv~~~~~d~~~~---~p~-~D~i~l   87 (90)
                      .+.+|||||||+|.++..+++..|..+++++|+ |.+++.+++          .+|++++.+|..+.   .++ ||+|++
T Consensus       116 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDis~~~l~~ar~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fDvIi~  195 (321)
T 2pt6_A          116 EPKNVLVVGGGDGGIIRELCKYKSVENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASKFLENVTNTYDVIIV  195 (321)
T ss_dssp             SCCEEEEEECTTCHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHHHHHHCCSCEEEEEE
T ss_pred             CCCEEEEEcCCccHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhhccccCCCcEEEEEccHHHHHhhcCCCceEEEE
Confidence            457999999999999999999878899999999 999887754          25899999998763   233 999997


Q ss_pred             e
Q 034578           88 K   88 (90)
Q Consensus        88 ~   88 (90)
                      .
T Consensus       196 d  196 (321)
T 2pt6_A          196 D  196 (321)
T ss_dssp             E
T ss_pred             C
Confidence            4

>3dou_A Ribosomal RNA large subunit methyltransferase J; cell division, structural genomics, protein structure initiative, PSI; HET: SAM; 1.45A {Thermoplasma volcanium} SCOP: c.66.1.0

Probab=99.09  E-value=5.7e-10  Score=70.43  Aligned_cols=73  Identities=19%  Similarity=0.336  Sum_probs=55.9

Q ss_pred             hhhHHHHHhhcccCCCCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeeh-HHHHHhCCCCCCeeEEEecCCCCC-----
Q 034578            6 KITMKAFVSHYKVDGFNNIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDL-QHVIATAPTHEGVSHVGGDMFDAI-----   79 (90)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~~rv~~~~~d~~~~~-----   79 (90)
                      ......+.+.+..  +.+..+|||+|||+|.++..++++  ..+++++|+ |.     ...++++++.+|+.+..     
T Consensus        10 ~~KL~ei~~~~~~--~~~g~~VLDlG~G~G~~s~~la~~--~~~V~gvD~~~~-----~~~~~v~~~~~D~~~~~~~~~~   80 (191)
T 3dou_A           10 AFKLEFLLDRYRV--VRKGDAVIEIGSSPGGWTQVLNSL--ARKIISIDLQEM-----EEIAGVRFIRCDIFKETIFDDI   80 (191)
T ss_dssp             HHHHHHHHHHHCC--SCTTCEEEEESCTTCHHHHHHTTT--CSEEEEEESSCC-----CCCTTCEEEECCTTSSSHHHHH
T ss_pred             HHHHHHHHHHcCC--CCCCCEEEEEeecCCHHHHHHHHc--CCcEEEEecccc-----ccCCCeEEEEccccCHHHHHHH
Confidence            3344556666662  566789999999999999999998  789999998 53     22468999999998731     


Q ss_pred             ---------CcccEEEe
Q 034578           80 ---------PNADAVFM   87 (90)
Q Consensus        80 ---------p~~D~i~l   87 (90)
                               ..+|+|+.
T Consensus        81 ~~~~~~~~~~~~D~Vls   97 (191)
T 3dou_A           81 DRALREEGIEKVDDVVS   97 (191)
T ss_dssp             HHHHHHHTCSSEEEEEE
T ss_pred             HHHhhcccCCcceEEec
Confidence                     25899886

>1r18_A Protein-L-isoaspartate(D-aspartate)-O-methyltrans; methyltransferase, isomerization, protein repair, S-adenosyl homocysteine; HET: SAH; 2.20A {Drosophila melanogaster} SCOP: c.66.1.7

Probab=99.09  E-value=1.3e-10  Score=74.35  Aligned_cols=80  Identities=14%  Similarity=0.187  Sum_probs=61.0

Q ss_pred             HHHHHhhcccCCCCCCCeEEEecCCchHHHHHHHHHCC------CCeEEEeeh-HHHHHhCCC-----------CCCeeE
Q 034578            9 MKAFVSHYKVDGFNNIRSMVDVGGGTGTVLAEIVKSYP------HIKGINFDL-QHVIATAPT-----------HEGVSH   70 (90)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p------~~~~~~~D~-p~~~~~a~~-----------~~rv~~   70 (90)
                      ...+++.+.. ...+..+|||+|||+|.++..+++..+      ..+++++|+ |.+++.+++           ..++++
T Consensus        71 ~~~~~~~l~~-~~~~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~v~~  149 (227)
T 1r18_A           71 HAFALEYLRD-HLKPGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSMLDSGQLLI  149 (227)
T ss_dssp             HHHHHHHTTT-TCCTTCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHHHHHHTSEEE
T ss_pred             HHHHHHHHHh-hCCCCCEEEEECCCccHHHHHHHHhcccccCCccCEEEEEEcCHHHHHHHHHHHHhcCccccCCCceEE
Confidence            3445555521 144567999999999999999999765      368999999 999988865           247999


Q ss_pred             EEecCCCCCC---cccEEEeec
Q 034578           71 VGGDMFDAIP---NADAVFMKV   89 (90)
Q Consensus        71 ~~~d~~~~~p---~~D~i~l~~   89 (90)
                      +.+|..++++   .||+|++..
T Consensus       150 ~~~d~~~~~~~~~~fD~I~~~~  171 (227)
T 1r18_A          150 VEGDGRKGYPPNAPYNAIHVGA  171 (227)
T ss_dssp             EESCGGGCCGGGCSEEEEEECS
T ss_pred             EECCcccCCCcCCCccEEEECC
Confidence            9999987554   289998753

>2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related protein; ubiquinone/menaquinone biosynthesis methyltransferase-relate protein; HET: SAI; 2.35A {Thermotoga maritima} SCOP: c.66.1.41

Probab=99.09  E-value=2.8e-10  Score=74.17  Aligned_cols=65  Identities=22%  Similarity=0.244  Sum_probs=52.3

Q ss_pred             CCCeEEEecCCchHHHHHHHHHCCCCeEEEeeh-HHHHHhCCCCCCeeEEEecCCC-CCCc--ccEEEeec
Q 034578           23 NIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDL-QHVIATAPTHEGVSHVGGDMFD-AIPN--ADAVFMKV   89 (90)
Q Consensus        23 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~~rv~~~~~d~~~-~~p~--~D~i~l~~   89 (90)
                      +..+|||+|||+|.++..+++.  ..+++++|+ |.+++.+++...-.++.+|+.+ +++.  +|+|++..
T Consensus        54 ~~~~vLDiGcG~G~~~~~l~~~--~~~v~gvD~s~~~l~~a~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~  122 (260)
T 2avn_A           54 NPCRVLDLGGGTGKWSLFLQER--GFEVVLVDPSKEMLEVAREKGVKNVVEAKAEDLPFPSGAFEAVLALG  122 (260)
T ss_dssp             SCCEEEEETCTTCHHHHHHHTT--TCEEEEEESCHHHHHHHHHHTCSCEEECCTTSCCSCTTCEEEEEECS
T ss_pred             CCCeEEEeCCCcCHHHHHHHHc--CCeEEEEeCCHHHHHHHHhhcCCCEEECcHHHCCCCCCCEEEEEEcc
Confidence            5679999999999999999987  568999999 9999888763222388899877 5543  99998754

>1sui_A Caffeoyl-COA O-methyltransferase; rossmann fold, protein-cofactor-substrate complex; HET: SAH FRE; 2.70A {Medicago sativa} SCOP: c.66.1.1 PDB: 1sus_A*

Probab=99.09  E-value=4.5e-11  Score=78.12  Aligned_cols=67  Identities=16%  Similarity=0.241  Sum_probs=56.0

Q ss_pred             CCCCeEEEecCCchHHHHHHHHHCC-CCeEEEeeh-HHHHHhCCC-------CCCeeEEEecCCCC---C------C-cc
Q 034578           22 NNIRSMVDVGGGTGTVLAEIVKSYP-HIKGINFDL-QHVIATAPT-------HEGVSHVGGDMFDA---I------P-NA   82 (90)
Q Consensus        22 ~~~~~vlDvG~G~G~~~~~l~~~~p-~~~~~~~D~-p~~~~~a~~-------~~rv~~~~~d~~~~---~------p-~~   82 (90)
                      .+..+|||||||+|..+..+++..| +.+++++|+ |.+++.+++       .++++++.+|..+.   +      + .|
T Consensus        78 ~~~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~l~~~~~~~~~f  157 (247)
T 1sui_A           78 INAKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLPVIKKAGVDHKIDFREGPALPVLDEMIKDEKNHGSY  157 (247)
T ss_dssp             TTCCEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCCHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHSGGGTTCB
T ss_pred             hCcCEEEEeCCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCeEEEECCHHHHHHHHHhccCCCCCE
Confidence            3467999999999999999999988 789999999 999888875       25899999998752   2      2 39


Q ss_pred             cEEEee
Q 034578           83 DAVFMK   88 (90)
Q Consensus        83 D~i~l~   88 (90)
                      |+|++.
T Consensus       158 D~V~~d  163 (247)
T 1sui_A          158 DFIFVD  163 (247)
T ss_dssp             SEEEEC
T ss_pred             EEEEEc
Confidence            999874

>2qm3_A Predicted methyltransferase; putative methyltransferase, structural genomics, pyrococcus PSI-2, protein structure initiative; HET: MSE; 2.05A {Pyrococcus furiosus dsm 3638}

Probab=99.07  E-value=1.8e-10  Score=79.12  Aligned_cols=65  Identities=11%  Similarity=0.120  Sum_probs=56.6

Q ss_pred             CCCeEEEecCCchHHHHHHHHHCCCCeEEEeeh-HHHHHhCCCC------CCeeEEEecCCCCCC-----cccEEEee
Q 034578           23 NIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDL-QHVIATAPTH------EGVSHVGGDMFDAIP-----NADAVFMK   88 (90)
Q Consensus        23 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~------~rv~~~~~d~~~~~p-----~~D~i~l~   88 (90)
                      +..+|||+| |+|.++..+++..|..+++++|+ |.+++.|+++      .|++++.+|+.+++|     .||+|+++
T Consensus       172 ~~~~VLDlG-G~G~~~~~la~~~~~~~v~~vDi~~~~l~~a~~~~~~~g~~~v~~~~~D~~~~l~~~~~~~fD~Vi~~  248 (373)
T 2qm3_A          172 ENKDIFVLG-DDDLTSIALMLSGLPKRIAVLDIDERLTKFIEKAANEIGYEDIEIFTFDLRKPLPDYALHKFDTFITD  248 (373)
T ss_dssp             TTCEEEEES-CTTCHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHHHTCCCEEEECCCTTSCCCTTTSSCBSEEEEC
T ss_pred             CCCEEEEEC-CCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCEEEEEChhhhhchhhccCCccEEEEC
Confidence            457999999 99999999999998899999999 9999988762      389999999988443     38999986

>3lcv_B Sisomicin-gentamicin resistance methylase SGM; antibiotic resistance, methyltransferase, transferase; HET: SAM; 2.00A {Micromonospora zionensis} PDB: 3lcu_A*

Probab=99.07  E-value=9.1e-11  Score=78.16  Aligned_cols=67  Identities=12%  Similarity=0.136  Sum_probs=58.0

Q ss_pred             CCCCeEEEecCCchHHHHHHHHHCCCCeEEEeeh-HHHHHhCCC-----CCCeeEEEecCCCC-CCc-ccEEEee
Q 034578           22 NNIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDL-QHVIATAPT-----HEGVSHVGGDMFDA-IPN-ADAVFMK   88 (90)
Q Consensus        22 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~-----~~rv~~~~~d~~~~-~p~-~D~i~l~   88 (90)
                      ..+.+|||||||+|-++..+....|..+++++|+ +.+++.+++     ..+.++...|+... .++ +|++++.
T Consensus       131 ~~p~~VLDLGCG~GpLAl~~~~~~p~a~y~a~DId~~~le~a~~~l~~~g~~~~~~v~D~~~~~p~~~~DvaL~l  205 (281)
T 3lcv_B          131 PRPNTLRDLACGLNPLAAPWMGLPAETVYIASDIDARLVGFVDEALTRLNVPHRTNVADLLEDRLDEPADVTLLL  205 (281)
T ss_dssp             CCCSEEEETTCTTGGGCCTTTTCCTTCEEEEEESBHHHHHHHHHHHHHTTCCEEEEECCTTTSCCCSCCSEEEET
T ss_pred             CCCceeeeeccCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCceEEEeeecccCCCCCcchHHHH
Confidence            3578999999999999999999999999999999 999998876     35688999999984 444 9999764

>4hc4_A Protein arginine N-methyltransferase 6; HRMT1L6, S-adenosyl-L-homocysteine, struc genomics, structural genomics consortium, SGC; HET: SAH; 1.97A {Homo sapiens}

Probab=99.07  E-value=1.5e-10  Score=80.23  Aligned_cols=65  Identities=18%  Similarity=0.277  Sum_probs=51.7

Q ss_pred             CCCeEEEecCCchHHHHHHHHHCCCCeEEEeehHHHHHhCCC-------CCCeeEEEecCCC-CCCc-ccEEEee
Q 034578           23 NIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDLQHVIATAPT-------HEGVSHVGGDMFD-AIPN-ADAVFMK   88 (90)
Q Consensus        23 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~p~~~~~a~~-------~~rv~~~~~d~~~-~~p~-~D~i~l~   88 (90)
                      +..+|||||||+|.++...+++. ..+++++|..++++.|++       .++++++.+|..+ .+|+ +|+|+.-
T Consensus        83 ~~k~VLDvG~GtGiLs~~Aa~aG-A~~V~ave~s~~~~~a~~~~~~n~~~~~i~~i~~~~~~~~lpe~~DvivsE  156 (376)
T 4hc4_A           83 RGKTVLDVGAGTGILSIFCAQAG-ARRVYAVEASAIWQQAREVVRFNGLEDRVHVLPGPVETVELPEQVDAIVSE  156 (376)
T ss_dssp             TTCEEEEETCTTSHHHHHHHHTT-CSEEEEEECSTTHHHHHHHHHHTTCTTTEEEEESCTTTCCCSSCEEEEECC
T ss_pred             CCCEEEEeCCCccHHHHHHHHhC-CCEEEEEeChHHHHHHHHHHHHcCCCceEEEEeeeeeeecCCccccEEEee
Confidence            45789999999999998877763 357999998446666654       3789999999988 6776 9999853

>2avd_A Catechol-O-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Homo sapiens} SCOP: c.66.1.1

Probab=99.07  E-value=6.2e-11  Score=75.65  Aligned_cols=67  Identities=9%  Similarity=0.117  Sum_probs=56.0

Q ss_pred             CCCCeEEEecCCchHHHHHHHHHCC-CCeEEEeeh-HHHHHhCCC-------CCCeeEEEecCCCC---C------Cccc
Q 034578           22 NNIRSMVDVGGGTGTVLAEIVKSYP-HIKGINFDL-QHVIATAPT-------HEGVSHVGGDMFDA---I------PNAD   83 (90)
Q Consensus        22 ~~~~~vlDvG~G~G~~~~~l~~~~p-~~~~~~~D~-p~~~~~a~~-------~~rv~~~~~d~~~~---~------p~~D   83 (90)
                      .+..+|||+|||+|..+..+++..| ..+++++|+ |.+++.+++       .++++++.+|+.+.   +      ..+|
T Consensus        68 ~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~~~~~~~~~~~~~D  147 (229)
T 2avd_A           68 IQAKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAEAEHKIDLRLKPALETLDELLAAGEAGTFD  147 (229)
T ss_dssp             TTCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHHTTCTTCEE
T ss_pred             cCCCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHCCCCCeEEEEEcCHHHHHHHHHhcCCCCCcc
Confidence            4567999999999999999999987 789999999 998888765       26899999998652   2      3489


Q ss_pred             EEEee
Q 034578           84 AVFMK   88 (90)
Q Consensus        84 ~i~l~   88 (90)
                      +|++.
T Consensus       148 ~v~~d  152 (229)
T 2avd_A          148 VAVVD  152 (229)
T ss_dssp             EEEEC
T ss_pred             EEEEC
Confidence            99874

>1qyr_A KSGA, high level kasugamycin resistance protein, S-adenosylMet; adenosine dimethyltransferase, rRNA modification, transferase, translation; 2.10A {Escherichia coli} SCOP: c.66.1.24 PDB: 4adv_V 3tpz_A

Probab=99.07  E-value=1e-10  Score=76.96  Aligned_cols=70  Identities=17%  Similarity=0.197  Sum_probs=55.4

Q ss_pred             hhhHHHHHhhcccCCCCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeeh-HHHHHhCCCC----CCeeEEEecCCC-CC
Q 034578            6 KITMKAFVSHYKVDGFNNIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDL-QHVIATAPTH----EGVSHVGGDMFD-AI   79 (90)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~----~rv~~~~~d~~~-~~   79 (90)
                      ..+++.+++.+.   ..+..+|||||||+|.++. +. +.++.+++++|+ +.+++.++++    ++++++.+|+.+ ++
T Consensus         7 ~~i~~~iv~~~~---~~~~~~VLEIG~G~G~lt~-l~-~~~~~~v~avEid~~~~~~a~~~~~~~~~v~~i~~D~~~~~~   81 (252)
T 1qyr_A            7 QFVIDSIVSAIN---PQKGQAMVEIGPGLAALTE-PV-GERLDQLTVIELDRDLAARLQTHPFLGPKLTIYQQDAMTFNF   81 (252)
T ss_dssp             HHHHHHHHHHHC---CCTTCCEEEECCTTTTTHH-HH-HTTCSCEEEECCCHHHHHHHHTCTTTGGGEEEECSCGGGCCH
T ss_pred             HHHHHHHHHhcC---CCCcCEEEEECCCCcHHHH-hh-hCCCCeEEEEECCHHHHHHHHHHhccCCceEEEECchhhCCH
Confidence            345677787776   5566789999999999999 64 455545999999 9999988763    589999999987 44


Q ss_pred             C
Q 034578           80 P   80 (90)
Q Consensus        80 p   80 (90)
                      +
T Consensus        82 ~   82 (252)
T 1qyr_A           82 G   82 (252)
T ss_dssp             H
T ss_pred             H
Confidence            4

>3bgv_A MRNA CAP guanine-N7 methyltransferase; alternative splicing, mRNA capping, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: SAH; 2.30A {Homo sapiens} PDB: 3epp_A*

Probab=99.06  E-value=2.1e-10  Score=76.57  Aligned_cols=66  Identities=17%  Similarity=0.130  Sum_probs=54.0

Q ss_pred             CCCeEEEecCCchHHHHHHHHHCCCCeEEEeeh-HHHHHhCCCC-------------CCeeEEEecCCC-C----C--C-
Q 034578           23 NIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDL-QHVIATAPTH-------------EGVSHVGGDMFD-A----I--P-   80 (90)
Q Consensus        23 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~-------------~rv~~~~~d~~~-~----~--p-   80 (90)
                      +..+|||+|||+|.++..+++ .+..+++++|+ +.+++.+++.             .+++++.+|+.+ +    +  + 
T Consensus        34 ~~~~VLDlGcG~G~~~~~l~~-~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~  112 (313)
T 3bgv_A           34 RDITVLDLGCGKGGDLLKWKK-GRINKLVCTDIADVSVKQCQQRYEDMKNRRDSEYIFSAEFITADSSKELLIDKFRDPQ  112 (313)
T ss_dssp             -CCEEEEETCTTTTTHHHHHH-TTCSEEEEEESCHHHHHHHHHHHHHHHSSSCC-CCCEEEEEECCTTTSCSTTTCSSTT
T ss_pred             CCCEEEEECCCCcHHHHHHHh-cCCCEEEEEeCCHHHHHHHHHHHHHhhhcccccccceEEEEEecccccchhhhcccCC
Confidence            567999999999999999988 46789999999 9999887642             379999999987 3    3  2 


Q ss_pred             -cccEEEeec
Q 034578           81 -NADAVFMKV   89 (90)
Q Consensus        81 -~~D~i~l~~   89 (90)
                       .+|+|++..
T Consensus       113 ~~fD~V~~~~  122 (313)
T 3bgv_A          113 MCFDICSCQF  122 (313)
T ss_dssp             CCEEEEEEET
T ss_pred             CCEEEEEEec
Confidence             389999864

>1i1n_A Protein-L-isoaspartate O-methyltransferase; S-adenosyl homocysteine, protein repair; HET: SAH; 1.50A {Homo sapiens} SCOP: c.66.1.7 PDB: 1kr5_A*

Probab=99.06  E-value=6.4e-10  Score=70.86  Aligned_cols=77  Identities=19%  Similarity=0.151  Sum_probs=59.1

Q ss_pred             HHHhhcccCCCCCCCeEEEecCCchHHHHHHHHHC-CCCeEEEeeh-HHHHHhCCC-----------CCCeeEEEecCCC
Q 034578           11 AFVSHYKVDGFNNIRSMVDVGGGTGTVLAEIVKSY-PHIKGINFDL-QHVIATAPT-----------HEGVSHVGGDMFD   77 (90)
Q Consensus        11 ~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~-p~~~~~~~D~-p~~~~~a~~-----------~~rv~~~~~d~~~   77 (90)
                      .+++.+.. ...+..+|||+|||+|.++..+++.. |..+++++|+ |.+++.+++           .++++++.+|+.+
T Consensus        66 ~~l~~l~~-~~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~  144 (226)
T 1i1n_A           66 YALELLFD-QLHEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQLVVGDGRM  144 (226)
T ss_dssp             HHHHHTTT-TSCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCTHHHHTSSEEEEESCGGG
T ss_pred             HHHHHHHh-hCCCCCEEEEEcCCcCHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhhcccccCCCcEEEEECCccc
Confidence            44444431 13456799999999999999999985 6789999999 999888764           2479999999876


Q ss_pred             CCC---cccEEEee
Q 034578           78 AIP---NADAVFMK   88 (90)
Q Consensus        78 ~~p---~~D~i~l~   88 (90)
                      ..+   .||+|++.
T Consensus       145 ~~~~~~~fD~i~~~  158 (226)
T 1i1n_A          145 GYAEEAPYDAIHVG  158 (226)
T ss_dssp             CCGGGCCEEEEEEC
T ss_pred             CcccCCCcCEEEEC
Confidence            322   38999875

>3dmg_A Probable ribosomal RNA small subunit methyltransf; monomethyltranserase, 16S rRNA methyltransferase, N2 G1207 methyltransferase; HET: SAH; 1.55A {Thermus thermophilus} PDB: 3dmf_A* 3dmh_A* 2zul_A* 2zwv_A*

Probab=99.05  E-value=5.4e-10  Score=77.31  Aligned_cols=80  Identities=11%  Similarity=0.147  Sum_probs=60.3

Q ss_pred             hhhHHHHHhhcccCCCCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeeh-HHHHHhCCCC-----CCeeEEEecCCCC-
Q 034578            6 KITMKAFVSHYKVDGFNNIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDL-QHVIATAPTH-----EGVSHVGGDMFDA-   78 (90)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~-----~rv~~~~~d~~~~-   78 (90)
                      +.+.+.+.+...+. ..+..+|||+|||+|.++..++++  ..+++++|+ +.+++.++++     .+++++.+|+.+. 
T Consensus       217 ~~ll~~l~~~l~~~-~~~~~~VLDlGcG~G~~~~~la~~--g~~V~gvDis~~al~~A~~n~~~~~~~v~~~~~D~~~~~  293 (381)
T 3dmg_A          217 LLLLEALQERLGPE-GVRGRQVLDLGAGYGALTLPLARM--GAEVVGVEDDLASVLSLQKGLEANALKAQALHSDVDEAL  293 (381)
T ss_dssp             HHHHHHHHHHHCTT-TTTTCEEEEETCTTSTTHHHHHHT--TCEEEEEESBHHHHHHHHHHHHHTTCCCEEEECSTTTTS
T ss_pred             HHHHHHHHHhhccc-CCCCCEEEEEeeeCCHHHHHHHHc--CCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEcchhhcc
Confidence            34445554443210 124579999999999999999997  569999999 9999988762     3589999999884 


Q ss_pred             CC--cccEEEee
Q 034578           79 IP--NADAVFMK   88 (90)
Q Consensus        79 ~p--~~D~i~l~   88 (90)
                      .+  .||+|+++
T Consensus       294 ~~~~~fD~Ii~n  305 (381)
T 3dmg_A          294 TEEARFDIIVTN  305 (381)
T ss_dssp             CTTCCEEEEEEC
T ss_pred             ccCCCeEEEEEC
Confidence            33  39999985

>2cmg_A Spermidine synthase; transferase, putrescine aminopropyltransferase, spermidine biosynthesis, polyamine biosynthesis, SPEE; 2.0A {Helicobacter pylori} PDB: 2cmh_A

Probab=99.05  E-value=4.5e-10  Score=74.20  Aligned_cols=64  Identities=11%  Similarity=0.084  Sum_probs=55.4

Q ss_pred             CCCeEEEecCCchHHHHHHHHHCCCCeEEEeeh-HHHHHhCCCC----------CCeeEEEecCCCCCCcccEEEee
Q 034578           23 NIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDL-QHVIATAPTH----------EGVSHVGGDMFDAIPNADAVFMK   88 (90)
Q Consensus        23 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~----------~rv~~~~~d~~~~~p~~D~i~l~   88 (90)
                      .+.+|||||||+|.++.++++. + .+++++|+ |.+++.|++.          +|++++.+|..+.+..||+|++.
T Consensus        72 ~~~~VL~iG~G~G~~~~~ll~~-~-~~v~~veid~~~i~~ar~~~~~~~~~~~~~rv~~~~~D~~~~~~~fD~Ii~d  146 (262)
T 2cmg_A           72 ELKEVLIVDGFDLELAHQLFKY-D-THIDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQLLDLDIKKYDLIFCL  146 (262)
T ss_dssp             CCCEEEEESSCCHHHHHHHTTS-S-CEEEEECSCHHHHGGGTTTSTTHHHHHTCTTEEEESSGGGSCCCCEEEEEES
T ss_pred             CCCEEEEEeCCcCHHHHHHHhC-C-CEEEEEECCHHHHHHHHHHHHhhccccCCCeEEEEechHHHHHhhCCEEEEC
Confidence            4579999999999999999998 7 89999999 9999998762          58999999998744449999864

>1inl_A Spermidine synthase; beta-barrel, rossman fold, structural genomics, PSI, protein structure initiative; 1.50A {Thermotoga maritima} SCOP: c.66.1.17 PDB: 1jq3_A*

Probab=99.05  E-value=2.6e-10  Score=76.35  Aligned_cols=66  Identities=24%  Similarity=0.315  Sum_probs=55.3

Q ss_pred             CCCeEEEecCCchHHHHHHHHHCCCCeEEEeeh-HHHHHhCCC----------CCCeeEEEecCCCC---CCc-ccEEEe
Q 034578           23 NIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDL-QHVIATAPT----------HEGVSHVGGDMFDA---IPN-ADAVFM   87 (90)
Q Consensus        23 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~----------~~rv~~~~~d~~~~---~p~-~D~i~l   87 (90)
                      .+.+|||||||+|.++..+++..|..+++++|+ |.+++.+++          .+|++++.+|..+.   .+. ||+|++
T Consensus        90 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~~~~a~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Ii~  169 (296)
T 1inl_A           90 NPKKVLIIGGGDGGTLREVLKHDSVEKAILCEVDGLVIEAARKYLKQTSCGFDDPRAEIVIANGAEYVRKFKNEFDVIII  169 (296)
T ss_dssp             SCCEEEEEECTTCHHHHHHTTSTTCSEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHGGGCSSCEEEEEE
T ss_pred             CCCEEEEEcCCcCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHhHhhccccCCCceEEEECcHHHHHhhCCCCceEEEE
Confidence            457999999999999999999888899999999 999887764          36899999997652   233 999986


Q ss_pred             e
Q 034578           88 K   88 (90)
Q Consensus        88 ~   88 (90)
                      .
T Consensus       170 d  170 (296)
T 1inl_A          170 D  170 (296)
T ss_dssp             E
T ss_pred             c
Confidence            3

>1yub_A Ermam, rRNA methyltransferase; MLS antibiotics; NMR {Streptococcus pneumoniae} SCOP: c.66.1.24

Probab=99.04  E-value=9.7e-11  Score=76.19  Aligned_cols=70  Identities=13%  Similarity=0.368  Sum_probs=59.2

Q ss_pred             hhhHHHHHhhcccCCCCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeeh-HHHHHhCCCC----CCeeEEEecCCC-CC
Q 034578            6 KITMKAFVSHYKVDGFNNIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDL-QHVIATAPTH----EGVSHVGGDMFD-AI   79 (90)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~----~rv~~~~~d~~~-~~   79 (90)
                      ....+.+++.++   ..+..+|||+|||+|.++..++++.  .+++++|+ +.+++.++++    ++++++.+|+.+ ++
T Consensus        15 ~~~~~~i~~~~~---~~~~~~VLDiG~G~G~~~~~l~~~~--~~v~~id~~~~~~~~a~~~~~~~~~v~~~~~D~~~~~~   89 (245)
T 1yub_A           15 EKVLNQIIKQLN---LKETDTVYEIGTGKGHLTTKLAKIS--KQVTSIELDSHLFNLSSEKLKLNTRVTLIHQDILQFQF   89 (245)
T ss_dssp             TTTHHHHHHHCC---CCSSEEEEECSCCCSSCSHHHHHHS--SEEEESSSSCSSSSSSSCTTTTCSEEEECCSCCTTTTC
T ss_pred             HHHHHHHHHhcC---CCCCCEEEEEeCCCCHHHHHHHHhC--CeEEEEECCHHHHHHHHHHhccCCceEEEECChhhcCc
Confidence            456778888877   5667899999999999999999985  78999999 9999888763    579999999988 55


Q ss_pred             C
Q 034578           80 P   80 (90)
Q Consensus        80 p   80 (90)
                      +
T Consensus        90 ~   90 (245)
T 1yub_A           90 P   90 (245)
T ss_dssp             C
T ss_pred             c
Confidence            4

>2o07_A Spermidine synthase; structural genomics, structural genomics consortium, SGC, transferase; HET: SPD MTA; 1.89A {Homo sapiens} SCOP: c.66.1.17 PDB: 2o06_A* 2o05_A* 2o0l_A* 3rw9_A*

Probab=99.03  E-value=1.9e-10  Score=77.39  Aligned_cols=67  Identities=25%  Similarity=0.383  Sum_probs=56.2

Q ss_pred             CCCCeEEEecCCchHHHHHHHHHCCCCeEEEeeh-HHHHHhCCC----------CCCeeEEEecCCCC---CCc-ccEEE
Q 034578           22 NNIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDL-QHVIATAPT----------HEGVSHVGGDMFDA---IPN-ADAVF   86 (90)
Q Consensus        22 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~----------~~rv~~~~~d~~~~---~p~-~D~i~   86 (90)
                      ..+.+|||||||+|.++..++++.|..+++++|+ |.+++.|++          .+|++++.+|..+.   .+. ||+|+
T Consensus        94 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~rv~v~~~Da~~~l~~~~~~fD~Ii  173 (304)
T 2o07_A           94 PNPRKVLIIGGGDGGVLREVVKHPSVESVVQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLHVGDGFEFMKQNQDAFDVII  173 (304)
T ss_dssp             SSCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHTCSSCEEEEE
T ss_pred             CCCCEEEEECCCchHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEECcHHHHHhhCCCCceEEE
Confidence            3568999999999999999999888899999999 999988764          36899999998652   233 99998


Q ss_pred             ee
Q 034578           87 MK   88 (90)
Q Consensus        87 l~   88 (90)
                      +.
T Consensus       174 ~d  175 (304)
T 2o07_A          174 TD  175 (304)
T ss_dssp             EE
T ss_pred             EC
Confidence            64

>3c3y_A Pfomt, O-methyltransferase; plant secondary metabolism; HET: SAH; 1.37A {Mesembryanthemum crystallinum}

Probab=99.03  E-value=1.2e-10  Score=75.48  Aligned_cols=67  Identities=21%  Similarity=0.215  Sum_probs=56.0

Q ss_pred             CCCCeEEEecCCchHHHHHHHHHCC-CCeEEEeeh-HHHHHhCCC-------CCCeeEEEecCCCC---C------C-cc
Q 034578           22 NNIRSMVDVGGGTGTVLAEIVKSYP-HIKGINFDL-QHVIATAPT-------HEGVSHVGGDMFDA---I------P-NA   82 (90)
Q Consensus        22 ~~~~~vlDvG~G~G~~~~~l~~~~p-~~~~~~~D~-p~~~~~a~~-------~~rv~~~~~d~~~~---~------p-~~   82 (90)
                      .+..+|||||||+|..+..+++..| +.+++++|+ |.+++.+++       .++++++.+|..+.   +      + .|
T Consensus        69 ~~~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~l~~~~~~~~~f  148 (237)
T 3c3y_A           69 VNAKKTIEVGVFTGYSLLLTALSIPDDGKITAIDFDREAYEIGLPFIRKAGVEHKINFIESDAMLALDNLLQGQESEGSY  148 (237)
T ss_dssp             TTCCEEEEECCTTSHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHSTTCTTCE
T ss_pred             hCCCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhccCCCCCc
Confidence            3567999999999999999999987 799999999 999888765       25799999998762   2      2 39


Q ss_pred             cEEEee
Q 034578           83 DAVFMK   88 (90)
Q Consensus        83 D~i~l~   88 (90)
                      |+|++.
T Consensus       149 D~I~~d  154 (237)
T 3c3y_A          149 DFGFVD  154 (237)
T ss_dssp             EEEEEC
T ss_pred             CEEEEC
Confidence            999864

>1mjf_A Spermidine synthase; spermidine synthetase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus furiosus} SCOP: c.66.1.17 PDB: 2e5w_A* 2zsu_A*

Probab=99.03  E-value=2.7e-10  Score=75.65  Aligned_cols=65  Identities=23%  Similarity=0.392  Sum_probs=54.1

Q ss_pred             CCCeEEEecCCchHHHHHHHHHCCCCeEEEeeh-HHHHHhCCC----------------CCCeeEEEecCCCCC--C-cc
Q 034578           23 NIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDL-QHVIATAPT----------------HEGVSHVGGDMFDAI--P-NA   82 (90)
Q Consensus        23 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~----------------~~rv~~~~~d~~~~~--p-~~   82 (90)
                      .+.+|||||||+|.++..++++ |..+++++|+ |.+++.|++                .+|++++.+|..+.+  + .|
T Consensus        75 ~~~~VLdiG~G~G~~~~~l~~~-~~~~v~~vDid~~~i~~ar~~~~~~~~l~~~~~~~~~~~v~~~~~D~~~~l~~~~~f  153 (281)
T 1mjf_A           75 KPKRVLVIGGGDGGTVREVLQH-DVDEVIMVEIDEDVIMVSKDLIKIDNGLLEAMLNGKHEKAKLTIGDGFEFIKNNRGF  153 (281)
T ss_dssp             CCCEEEEEECTTSHHHHHHTTS-CCSEEEEEESCHHHHHHHHHHTCTTTTHHHHHHTTCCSSEEEEESCHHHHHHHCCCE
T ss_pred             CCCeEEEEcCCcCHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHHhhccccccccccCCCCcEEEEECchHHHhcccCCe
Confidence            4679999999999999999998 8889999999 998887652                368999999976522  3 39


Q ss_pred             cEEEee
Q 034578           83 DAVFMK   88 (90)
Q Consensus        83 D~i~l~   88 (90)
                      |+|++.
T Consensus       154 D~Ii~d  159 (281)
T 1mjf_A          154 DVIIAD  159 (281)
T ss_dssp             EEEEEE
T ss_pred             eEEEEC
Confidence            999874

>3bwc_A Spermidine synthase; SAM, SGPP, structura genomics, PSI, protein structure initiative, structural GEN pathogenic protozoa consortium; HET: MSE SAM; 2.30A {Trypanosoma cruzi} PDB: 3bwb_A*

Probab=99.03  E-value=2.6e-10  Score=76.55  Aligned_cols=67  Identities=21%  Similarity=0.254  Sum_probs=56.1

Q ss_pred             CCCCeEEEecCCchHHHHHHHHHCCCCeEEEeeh-HHHHHhCCC----------CCCeeEEEecCCCC----CCc-ccEE
Q 034578           22 NNIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDL-QHVIATAPT----------HEGVSHVGGDMFDA----IPN-ADAV   85 (90)
Q Consensus        22 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~----------~~rv~~~~~d~~~~----~p~-~D~i   85 (90)
                      .+..+|||||||+|.++..+++..|..+++++|+ |.+++.+++          .+|++++.+|+.+.    .+. ||+|
T Consensus        94 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~fDvI  173 (304)
T 3bwc_A           94 PKPERVLIIGGGDGGVLREVLRHGTVEHCDLVDIDGEVMEQSKQHFPQISRSLADPRATVRVGDGLAFVRQTPDNTYDVV  173 (304)
T ss_dssp             SSCCEEEEEECTTSHHHHHHHTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHSSCTTCEEEE
T ss_pred             CCCCeEEEEcCCCCHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEECcHHHHHHhccCCceeEE
Confidence            3567999999999999999999878889999999 999888764          36899999998762    133 9999


Q ss_pred             Eee
Q 034578           86 FMK   88 (90)
Q Consensus        86 ~l~   88 (90)
                      ++.
T Consensus       174 i~d  176 (304)
T 3bwc_A          174 IID  176 (304)
T ss_dssp             EEE
T ss_pred             EEC
Confidence            974

>1uir_A Polyamine aminopropyltransferase; spermidien synthase, spermine synthase, riken STR genomics/proteomics initiative, RSGI; 2.00A {Thermus thermophilus} SCOP: c.66.1.17 PDB: 3anx_A*

Probab=99.02  E-value=3.7e-10  Score=76.15  Aligned_cols=66  Identities=23%  Similarity=0.301  Sum_probs=55.7

Q ss_pred             CCCeEEEecCCchHHHHHHHHHCCCCeEEEeeh-HHHHHhCCC-----------CCCeeEEEecCCCC---CCc-ccEEE
Q 034578           23 NIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDL-QHVIATAPT-----------HEGVSHVGGDMFDA---IPN-ADAVF   86 (90)
Q Consensus        23 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~-----------~~rv~~~~~d~~~~---~p~-~D~i~   86 (90)
                      .+.+|||||||+|.++..+++..|..+++++|+ |.+++.+++           .+|++++.+|..+.   .+. ||+|+
T Consensus        77 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Ii  156 (314)
T 1uir_A           77 EPKRVLIVGGGEGATLREVLKHPTVEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDDARAYLERTEERYDVVI  156 (314)
T ss_dssp             CCCEEEEEECTTSHHHHHHTTSTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCHHHHHHHCCCCEEEEE
T ss_pred             CCCeEEEEcCCcCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHhHhhccccccCCceEEEEchHHHHHHhcCCCccEEE
Confidence            457999999999999999999888889999999 999887753           35899999998762   233 99999


Q ss_pred             ee
Q 034578           87 MK   88 (90)
Q Consensus        87 l~   88 (90)
                      +.
T Consensus       157 ~d  158 (314)
T 1uir_A          157 ID  158 (314)
T ss_dssp             EE
T ss_pred             EC
Confidence            75

>3bzb_A Uncharacterized protein; RED ALGA, protein structure initiat center for eukaryotic structural genomics, CESG, structural genomics; 2.79A {Cyanidioschyzon merolae}

Probab=99.00  E-value=9.6e-10  Score=72.85  Aligned_cols=81  Identities=10%  Similarity=0.094  Sum_probs=57.2

Q ss_pred             hhhhHHHHHhhcccCCCCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeeh--HHHHHhCCCC----------------C
Q 034578            5 TKITMKAFVSHYKVDGFNNIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDL--QHVIATAPTH----------------E   66 (90)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~--p~~~~~a~~~----------------~   66 (90)
                      +..+++.+.+...   ..+..+|||+|||+|.++..+++.. ..+++++|+  |.+++.++++                +
T Consensus        64 ~~~l~~~l~~~~~---~~~~~~vLDlG~G~G~~~~~~a~~~-~~~v~~~D~s~~~~~~~a~~n~~~N~~~~~~~~~~~~~  139 (281)
T 3bzb_A           64 ARALADTLCWQPE---LIAGKTVCELGAGAGLVSIVAFLAG-ADQVVATDYPDPEILNSLESNIREHTANSCSSETVKRA  139 (281)
T ss_dssp             HHHHHHHHHHCGG---GTTTCEEEETTCTTSHHHHHHHHTT-CSEEEEEECSCHHHHHHHHHHHHTTCC----------C
T ss_pred             HHHHHHHHHhcch---hcCCCeEEEecccccHHHHHHHHcC-CCEEEEEeCCCHHHHHHHHHHHHHhhhhhcccccCCCC
Confidence            4455666665544   3456799999999999999988863 458999998  6787766431                3


Q ss_pred             CeeEEEecCCCC---C-----C-cccEEEeec
Q 034578           67 GVSHVGGDMFDA---I-----P-NADAVFMKV   89 (90)
Q Consensus        67 rv~~~~~d~~~~---~-----p-~~D~i~l~~   89 (90)
                      ++++...|+.+.   +     + .||+|+++.
T Consensus       140 ~v~~~~~~~~~~~~~~~~~~~~~~fD~Ii~~d  171 (281)
T 3bzb_A          140 SPKVVPYRWGDSPDSLQRCTGLQRFQVVLLAD  171 (281)
T ss_dssp             CCEEEECCTTSCTHHHHHHHSCSSBSEEEEES
T ss_pred             CeEEEEecCCCccHHHHhhccCCCCCEEEEeC
Confidence            688886666542   2     2 399999864

>2nyu_A Putative ribosomal RNA methyltransferase 2; SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.76A {Homo sapiens}

Probab=99.00  E-value=2.3e-09  Score=66.65  Aligned_cols=72  Identities=19%  Similarity=0.266  Sum_probs=53.6

Q ss_pred             HHHHhhcccCCCCCCCeEEEecCCchHHHHHHHHHCCC---------CeEEEeehHHHHHhCCCCCCeeEE-EecCCCC-
Q 034578           10 KAFVSHYKVDGFNNIRSMVDVGGGTGTVLAEIVKSYPH---------IKGINFDLQHVIATAPTHEGVSHV-GGDMFDA-   78 (90)
Q Consensus        10 ~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~---------~~~~~~D~p~~~~~a~~~~rv~~~-~~d~~~~-   78 (90)
                      ..+.+.+..  +.+..+|||+|||+|.++..++++++.         .+++++|+.++    ....+++++ .+|+.+. 
T Consensus        11 ~~l~~~~~~--~~~~~~vLDlGcG~G~~~~~la~~~~~~~~~~~~~~~~v~~vD~s~~----~~~~~~~~~~~~d~~~~~   84 (196)
T 2nyu_A           11 LEVNERHQI--LRPGLRVLDCGAAPGAWSQVAVQKVNAAGTDPSSPVGFVLGVDLLHI----FPLEGATFLCPADVTDPR   84 (196)
T ss_dssp             HHHHHHHCC--CCTTCEEEEETCCSCHHHHHHHHHTTTTCCCTTSCCCEEEEECSSCC----CCCTTCEEECSCCTTSHH
T ss_pred             HHHHHhcCC--CCCCCEEEEeCCCCCHHHHHHHHHhccccccccCCCceEEEEechhc----ccCCCCeEEEeccCCCHH
Confidence            344455552  456789999999999999999999875         89999998321    123578999 9998762 


Q ss_pred             --------CC--cccEEEe
Q 034578           79 --------IP--NADAVFM   87 (90)
Q Consensus        79 --------~p--~~D~i~l   87 (90)
                              ++  .+|+|++
T Consensus        85 ~~~~~~~~~~~~~fD~V~~  103 (196)
T 2nyu_A           85 TSQRILEVLPGRRADVILS  103 (196)
T ss_dssp             HHHHHHHHSGGGCEEEEEE
T ss_pred             HHHHHHHhcCCCCCcEEEe
Confidence                    23  3899986

>2b2c_A Spermidine synthase; beta-alpha, transferase; 2.50A {Caenorhabditis elegans} SCOP: c.66.1.17

Probab=99.00  E-value=2.3e-10  Score=77.45  Aligned_cols=66  Identities=24%  Similarity=0.405  Sum_probs=55.4

Q ss_pred             CCCeEEEecCCchHHHHHHHHHCCCCeEEEeeh-HHHHHhCCC----------CCCeeEEEecCCCCC---C-cccEEEe
Q 034578           23 NIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDL-QHVIATAPT----------HEGVSHVGGDMFDAI---P-NADAVFM   87 (90)
Q Consensus        23 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~----------~~rv~~~~~d~~~~~---p-~~D~i~l   87 (90)
                      .+.+|||||||+|.++..+++..|..+++++|+ |.+++.|++          .+|++++.+|..+.+   + .||+|++
T Consensus       108 ~~~~VLdIG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~Ar~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii~  187 (314)
T 2b2c_A          108 DPKRVLIIGGGDGGILREVLKHESVEKVTMCEIDEMVIDVAKKFLPGMSCGFSHPKLDLFCGDGFEFLKNHKNEFDVIIT  187 (314)
T ss_dssp             SCCEEEEESCTTSHHHHHHTTCTTCCEEEEECSCHHHHHHHHHHCTTTSGGGGCTTEEEECSCHHHHHHHCTTCEEEEEE
T ss_pred             CCCEEEEEcCCcCHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHhccccCCCCEEEEEChHHHHHHhcCCCceEEEE
Confidence            457999999999999999999888899999999 999887753          358999999987632   3 3999986


Q ss_pred             e
Q 034578           88 K   88 (90)
Q Consensus        88 ~   88 (90)
                      .
T Consensus       188 d  188 (314)
T 2b2c_A          188 D  188 (314)
T ss_dssp             C
T ss_pred             c
Confidence            4

>2i7c_A Spermidine synthase; transferase, structural genomics consor; HET: AAT 1PG; 1.71A {Plasmodium falciparum} PDB: 2hte_A* 3b7p_A* 3rie_A* 2pwp_A*

Probab=98.99  E-value=2.8e-10  Score=75.71  Aligned_cols=66  Identities=20%  Similarity=0.273  Sum_probs=55.7

Q ss_pred             CCCeEEEecCCchHHHHHHHHHCCCCeEEEeeh-HHHHHhCCC----------CCCeeEEEecCCCC---CCc-ccEEEe
Q 034578           23 NIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDL-QHVIATAPT----------HEGVSHVGGDMFDA---IPN-ADAVFM   87 (90)
Q Consensus        23 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~----------~~rv~~~~~d~~~~---~p~-~D~i~l   87 (90)
                      .+.+|||||||+|.++..+++..|..+++++|+ |.+++.+++          .+|++++.+|..+.   .++ ||+|++
T Consensus        78 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Ii~  157 (283)
T 2i7c_A           78 EPKNVLVVGGGDGGIIRELCKYKSVENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASKFLENVTNTYDVIIV  157 (283)
T ss_dssp             SCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHHHHHHCCSCEEEEEE
T ss_pred             CCCeEEEEeCCcCHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHhHHhccccCCCcEEEEECChHHHHHhCCCCceEEEE
Confidence            568999999999999999999888899999999 999887754          36899999998762   233 999997


Q ss_pred             e
Q 034578           88 K   88 (90)
Q Consensus        88 ~   88 (90)
                      .
T Consensus       158 d  158 (283)
T 2i7c_A          158 D  158 (283)
T ss_dssp             E
T ss_pred             c
Confidence            3

>3cbg_A O-methyltransferase; cyanobacterium; HET: SAH FER 4FE; 2.00A {Synechocystis SP}

Probab=98.99  E-value=1.2e-10  Score=75.12  Aligned_cols=66  Identities=20%  Similarity=0.275  Sum_probs=54.9

Q ss_pred             CCCeEEEecCCchHHHHHHHHHCC-CCeEEEeeh-HHHHHhCCC-------CCCeeEEEecCCCC---C------CcccE
Q 034578           23 NIRSMVDVGGGTGTVLAEIVKSYP-HIKGINFDL-QHVIATAPT-------HEGVSHVGGDMFDA---I------PNADA   84 (90)
Q Consensus        23 ~~~~vlDvG~G~G~~~~~l~~~~p-~~~~~~~D~-p~~~~~a~~-------~~rv~~~~~d~~~~---~------p~~D~   84 (90)
                      +..+|||+|||+|..+..+++..| +.+++++|+ |.+++.|++       .++++++.+|+.+.   +      ..+|+
T Consensus        72 ~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~l~~l~~~~~~~~fD~  151 (232)
T 3cbg_A           72 GAKQVLEIGVFRGYSALAMALQLPPDGQIIACDQDPNATAIAKKYWQKAGVAEKISLRLGPALATLEQLTQGKPLPEFDL  151 (232)
T ss_dssp             TCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHHHHHTSSSCCCEEE
T ss_pred             CCCEEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcCCCCCcCE
Confidence            467999999999999999999987 789999999 999888875       25799999997541   2      34899


Q ss_pred             EEee
Q 034578           85 VFMK   88 (90)
Q Consensus        85 i~l~   88 (90)
                      |++.
T Consensus       152 V~~d  155 (232)
T 3cbg_A          152 IFID  155 (232)
T ss_dssp             EEEC
T ss_pred             EEEC
Confidence            9864

>2i62_A Nicotinamide N-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAH; 1.80A {Mus musculus} PDB: 2iip_A* 3rod_A*

Probab=98.99  E-value=3.2e-10  Score=73.31  Aligned_cols=68  Identities=12%  Similarity=0.065  Sum_probs=53.9

Q ss_pred             CCCCeEEEecCCchHHHHHHHHHCCCCeEEEeeh-HHHHHhCCC----CC------------------------------
Q 034578           22 NNIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDL-QHVIATAPT----HE------------------------------   66 (90)
Q Consensus        22 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~----~~------------------------------   66 (90)
                      .+..+|||+|||+|.++..+++..+ .+++++|+ |.+++.+++    ..                              
T Consensus        55 ~~~~~vLDlGcG~G~~~~~l~~~~~-~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  133 (265)
T 2i62_A           55 VKGELLIDIGSGPTIYQLLSACESF-TEIIVSDYTDQNLWELQKWLKKEPGAFDWSPVVTYVCDLEGNRMKGPEKEEKLR  133 (265)
T ss_dssp             CCEEEEEEESCTTCCGGGTTGGGTE-EEEEEEESCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHTTTCSCHHHHHHHHH
T ss_pred             cCCCEEEEECCCccHHHHHHhhccc-CeEEEecCCHHHHHHHHHHHhcCCccccchhhhhhhhcccccccchHHHHHHhh
Confidence            3567899999999999999988766 68999999 999888754    11                              


Q ss_pred             -Ce-eEEEecCCCC-C--C---c-ccEEEeecC
Q 034578           67 -GV-SHVGGDMFDA-I--P---N-ADAVFMKVA   90 (90)
Q Consensus        67 -rv-~~~~~d~~~~-~--p---~-~D~i~l~~v   90 (90)
                       ++ +++.+|+.+. .  +   . +|+|++..+
T Consensus       134 ~~v~~~~~~d~~~~~~~~~~~~~~fD~v~~~~~  166 (265)
T 2i62_A          134 RAIKQVLKCDVTQSQPLGGVSLPPADCLLSTLC  166 (265)
T ss_dssp             HHEEEEEECCTTSSSTTTTCCCCCEEEEEEESC
T ss_pred             hhheeEEEeeeccCCCCCccccCCccEEEEhhh
Confidence             27 9999999872 2  2   3 899998753

>4azs_A Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15A {Escherichia coli} PDB: 4azt_A* 4azv_A* 4azw_A*

Probab=98.97  E-value=4.8e-10  Score=80.75  Aligned_cols=65  Identities=14%  Similarity=0.140  Sum_probs=53.3

Q ss_pred             CCCeEEEecCCchHHHHHHHHHCCCCeEEEeeh-HHHHHhCCC----C--CCeeEEEecCCC---CC-C-cccEEEeec
Q 034578           23 NIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDL-QHVIATAPT----H--EGVSHVGGDMFD---AI-P-NADAVFMKV   89 (90)
Q Consensus        23 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~----~--~rv~~~~~d~~~---~~-p-~~D~i~l~~   89 (90)
                      .+.+|||||||.|.++..+++.  +++++++|. +.+++.|+.    .  -+++|..++..+   .. + .||+|++..
T Consensus        66 ~~~~vLDvGCG~G~~~~~la~~--ga~V~giD~~~~~i~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~fD~v~~~e  142 (569)
T 4azs_A           66 RPLNVLDLGCAQGFFSLSLASK--GATIVGIDFQQENINVCRALAEENPDFAAEFRVGRIEEVIAALEEGEFDLAIGLS  142 (569)
T ss_dssp             SCCEEEEETCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHTSTTSEEEEEECCHHHHHHHCCTTSCSEEEEES
T ss_pred             CCCeEEEECCCCcHHHHHHHhC--CCEEEEECCCHHHHHHHHHHHHhcCCCceEEEECCHHHHhhhccCCCccEEEECc
Confidence            4568999999999999999997  689999999 999988764    2  368999998865   23 3 399998764

>2oxt_A Nucleoside-2'-O-methyltransferase; flavivirus, viral enzyme, RNA capping, S-adenosyl-L-methionine, viral protein; HET: SAM; 2.90A {Meaban virus}

Probab=98.97  E-value=1.1e-09  Score=72.45  Aligned_cols=64  Identities=11%  Similarity=0.074  Sum_probs=49.0

Q ss_pred             CCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeeh-HHHHHhCCCC--C------CeeEE--EecCCCCCCc-ccEEEee
Q 034578           21 FNNIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDL-QHVIATAPTH--E------GVSHV--GGDMFDAIPN-ADAVFMK   88 (90)
Q Consensus        21 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~--~------rv~~~--~~d~~~~~p~-~D~i~l~   88 (90)
                      +.+..+|||+|||+|.++..++++   .+++++|+ | +...+++.  .      ++.++  .+|+.+-.+. +|+|++.
T Consensus        72 ~~~g~~VLDlGcGtG~~s~~la~~---~~V~gvD~s~-m~~~a~~~~~~~~~~~~~v~~~~~~~D~~~l~~~~fD~V~sd  147 (265)
T 2oxt_A           72 VELTGRVVDLGCGRGGWSYYAASR---PHVMDVRAYT-LGVGGHEVPRITESYGWNIVKFKSRVDIHTLPVERTDVIMCD  147 (265)
T ss_dssp             CCCCEEEEEESCTTSHHHHHHHTS---TTEEEEEEEC-CCCSSCCCCCCCCBTTGGGEEEECSCCTTTSCCCCCSEEEEC
T ss_pred             CCCCCEEEEeCcCCCHHHHHHHHc---CcEEEEECch-hhhhhhhhhhhhhccCCCeEEEecccCHhHCCCCCCcEEEEe
Confidence            455679999999999999999887   68999999 6 54444332  2      68999  8999772133 9999874

>2wa2_A Non-structural protein 5; transferase, S-adenosyl-L- methionine, virion, membrane, flavivirus, N7-methyltransferase, 2'-O-methyltransferase; HET: SAM; 1.80A {Modoc virus} PDB: 2wa1_A*

Probab=98.97  E-value=7.6e-10  Score=73.69  Aligned_cols=64  Identities=14%  Similarity=0.074  Sum_probs=48.9

Q ss_pred             CCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeeh-HHHHHhCCCC--C------CeeEE--EecCCC-CCCcccEEEee
Q 034578           21 FNNIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDL-QHVIATAPTH--E------GVSHV--GGDMFD-AIPNADAVFMK   88 (90)
Q Consensus        21 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~--~------rv~~~--~~d~~~-~~p~~D~i~l~   88 (90)
                      +.+..+|||+|||+|.++..++++   .+++++|+ | +...+++.  .      ++.++  .+|+.+ +-..+|+|++.
T Consensus        80 ~~~g~~VLDlGcGtG~~s~~la~~---~~V~gVD~s~-m~~~a~~~~~~~~~~~~~v~~~~~~~D~~~l~~~~fD~Vvsd  155 (276)
T 2wa2_A           80 VELKGTVVDLGCGRGSWSYYAASQ---PNVREVKAYT-LGTSGHEKPRLVETFGWNLITFKSKVDVTKMEPFQADTVLCD  155 (276)
T ss_dssp             CCCCEEEEEESCTTCHHHHHHHTS---TTEEEEEEEC-CCCTTSCCCCCCCCTTGGGEEEECSCCGGGCCCCCCSEEEEC
T ss_pred             CCCCCEEEEeccCCCHHHHHHHHc---CCEEEEECch-hhhhhhhchhhhhhcCCCeEEEeccCcHhhCCCCCcCEEEEC
Confidence            455679999999999999999987   68999999 6 64444332  2      78999  899876 31239999875

>1ixk_A Methyltransferase; open beta sheet; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.38

Probab=98.96  E-value=1.4e-09  Score=73.30  Aligned_cols=67  Identities=9%  Similarity=0.091  Sum_probs=55.9

Q ss_pred             CCCCCeEEEecCCchHHHHHHHHHCC-CCeEEEeeh-HHHHHhCCCC------CCeeEEEecCCC-C-CC-cccEEEe
Q 034578           21 FNNIRSMVDVGGGTGTVLAEIVKSYP-HIKGINFDL-QHVIATAPTH------EGVSHVGGDMFD-A-IP-NADAVFM   87 (90)
Q Consensus        21 ~~~~~~vlDvG~G~G~~~~~l~~~~p-~~~~~~~D~-p~~~~~a~~~------~rv~~~~~d~~~-~-~p-~~D~i~l   87 (90)
                      ..+..+|||+|||+|..+..+++..+ ..+++++|+ +.+++.++++      .+++++.+|+.+ + .+ .+|+|++
T Consensus       116 ~~~g~~VLDlg~G~G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~~~~~~g~~~v~~~~~D~~~~~~~~~~fD~Il~  193 (315)
T 1ixk_A          116 PKPGEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRETRLNLSRLGVLNVILFHSSSLHIGELNVEFDKILL  193 (315)
T ss_dssp             CCTTCEEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHTCCSEEEESSCGGGGGGGCCCEEEEEE
T ss_pred             CCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHHhCCCeEEEEECChhhcccccccCCEEEE
Confidence            45668999999999999999999975 589999999 9998887652      479999999876 2 23 3999987

>1vlm_A SAM-dependent methyltransferase; possible histamine methyltransferase, structural genomics, JCSG, protein struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.66.1.41

Probab=98.95  E-value=4.3e-10  Score=71.51  Aligned_cols=60  Identities=20%  Similarity=0.268  Sum_probs=50.8

Q ss_pred             CCeEEEecCCchHHHHHHHHHCCCCeEEEeeh-HHHHHhCCCCCCeeEEEecCCC-CCCc--ccEEEeecC
Q 034578           24 IRSMVDVGGGTGTVLAEIVKSYPHIKGINFDL-QHVIATAPTHEGVSHVGGDMFD-AIPN--ADAVFMKVA   90 (90)
Q Consensus        24 ~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~~rv~~~~~d~~~-~~p~--~D~i~l~~v   90 (90)
                      ..+|||+|||+|.++..+++.      +++|+ +.+++.+++. +++++.+|+.+ +++.  +|+|++.++
T Consensus        48 ~~~vLDiG~G~G~~~~~l~~~------~~vD~s~~~~~~a~~~-~~~~~~~d~~~~~~~~~~fD~v~~~~~  111 (219)
T 1vlm_A           48 EGRGVEIGVGTGRFAVPLKIK------IGVEPSERMAEIARKR-GVFVLKGTAENLPLKDESFDFALMVTT  111 (219)
T ss_dssp             SSCEEEETCTTSTTHHHHTCC------EEEESCHHHHHHHHHT-TCEEEECBTTBCCSCTTCEEEEEEESC
T ss_pred             CCcEEEeCCCCCHHHHHHHHH------hccCCCHHHHHHHHhc-CCEEEEcccccCCCCCCCeeEEEEcch
Confidence            679999999999999988765      99999 9999988776 79999999876 4443  899998753

>3k6r_A Putative transferase PH0793; structural genomics, PSI structure initiative, midwest center for structural genomic unknown function; 2.10A {Pyrococcus horikoshii} PDB: 3a25_A* 3a26_A*

Probab=98.95  E-value=8.5e-10  Score=73.69  Aligned_cols=66  Identities=20%  Similarity=0.114  Sum_probs=55.5

Q ss_pred             CCCCeEEEecCCchHHHHHHHHHCCCCeEEEeeh-HHHHHhCCC-------CCCeeEEEecCCCCCCc--ccEEEee
Q 034578           22 NNIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDL-QHVIATAPT-------HEGVSHVGGDMFDAIPN--ADAVFMK   88 (90)
Q Consensus        22 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~-------~~rv~~~~~d~~~~~p~--~D~i~l~   88 (90)
                      .+..+|||+|||+|.+++.++++ ...+++++|+ |.+++.+++       .++++++.+|..+..+.  ||.|+|.
T Consensus       124 ~~g~~VlD~~aG~G~~~i~~a~~-g~~~V~avD~np~a~~~~~~N~~~N~v~~~v~~~~~D~~~~~~~~~~D~Vi~~  199 (278)
T 3k6r_A          124 KPDELVVDMFAGIGHLSLPIAVY-GKAKVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFPGENIADRILMG  199 (278)
T ss_dssp             CTTCEEEETTCTTTTTTHHHHHH-TCCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTCCCCSCEEEEEEC
T ss_pred             CCCCEEEEecCcCcHHHHHHHHh-cCCeEEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCcHHHhccccCCCEEEEC
Confidence            35689999999999999999987 4578999999 999998876       37899999999884332  9999886

>3ajd_A Putative methyltransferase MJ0026; tRNA, M5C, rossmann fold, structural genomics, riken structu genomics/proteomics initiative; 1.27A {Methanocaldococcus jannaschii} PDB: 3a4t_A

Probab=98.93  E-value=8.2e-10  Score=72.94  Aligned_cols=68  Identities=7%  Similarity=0.062  Sum_probs=55.9

Q ss_pred             CCCCCeEEEecCCchHHHHHHHHHCCC-CeEEEeeh-HHHHHhCCCC------CCeeEEEecCCC-CC-----C-cccEE
Q 034578           21 FNNIRSMVDVGGGTGTVLAEIVKSYPH-IKGINFDL-QHVIATAPTH------EGVSHVGGDMFD-AI-----P-NADAV   85 (90)
Q Consensus        21 ~~~~~~vlDvG~G~G~~~~~l~~~~p~-~~~~~~D~-p~~~~~a~~~------~rv~~~~~d~~~-~~-----p-~~D~i   85 (90)
                      ..+..+|||+|||+|..+..+++..++ .+++++|+ +.+++.++++      .+++++.+|+.+ +.     + .+|+|
T Consensus        81 ~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avD~~~~~l~~~~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~~~fD~V  160 (274)
T 3ajd_A           81 PREDDFILDMCAAPGGKTTHLAQLMKNKGTIVAVEISKTRTKALKSNINRMGVLNTIIINADMRKYKDYLLKNEIFFDKI  160 (274)
T ss_dssp             CCTTCEEEETTCTTCHHHHHHHHHTTTCSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCHHHHHHHHHHTTCCEEEE
T ss_pred             CCCcCEEEEeCCCccHHHHHHHHHcCCCCEEEEECCCHHHHHHHHHHHHHhCCCcEEEEeCChHhcchhhhhccccCCEE
Confidence            445679999999999999999999876 89999999 8988877652      489999999876 21     3 38999


Q ss_pred             Eee
Q 034578           86 FMK   88 (90)
Q Consensus        86 ~l~   88 (90)
                      ++.
T Consensus       161 l~d  163 (274)
T 3ajd_A          161 LLD  163 (274)
T ss_dssp             EEE
T ss_pred             EEc
Confidence            874

>2igt_A SAM dependent methyltransferase; alpha-beta sandwich, beta-barrel, structural genomics, PSI-2 structure initiative; HET: MSE SAM GOL; 1.89A {Agrobacterium tumefaciens str} SCOP: c.66.1.51

Probab=98.92  E-value=8.5e-10  Score=75.06  Aligned_cols=63  Identities=14%  Similarity=0.125  Sum_probs=52.3

Q ss_pred             CCCeEEEecCCchHHHHHHHHHCCCCeEEEeeh-HHHHHhCCCC-------C-CeeEEEecCCCCC------C-cccEEE
Q 034578           23 NIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDL-QHVIATAPTH-------E-GVSHVGGDMFDAI------P-NADAVF   86 (90)
Q Consensus        23 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~-------~-rv~~~~~d~~~~~------p-~~D~i~   86 (90)
                      +..+|||+|||+|.++..+++..  .+++++|+ +.+++.++++       + +++++.+|+++.+      . .||+|+
T Consensus       153 ~~~~VLDlgcGtG~~sl~la~~g--a~V~~VD~s~~al~~a~~n~~~~gl~~~~v~~i~~D~~~~l~~~~~~~~~fD~Ii  230 (332)
T 2igt_A          153 RPLKVLNLFGYTGVASLVAAAAG--AEVTHVDASKKAIGWAKENQVLAGLEQAPIRWICEDAMKFIQREERRGSTYDIIL  230 (332)
T ss_dssp             SCCEEEEETCTTCHHHHHHHHTT--CEEEEECSCHHHHHHHHHHHHHHTCTTSCEEEECSCHHHHHHHHHHHTCCBSEEE
T ss_pred             CCCcEEEcccccCHHHHHHHHcC--CEEEEEECCHHHHHHHHHHHHHcCCCccceEEEECcHHHHHHHHHhcCCCceEEE
Confidence            35699999999999999999964  39999999 9999988762       2 5999999998732      2 399998


Q ss_pred             e
Q 034578           87 M   87 (90)
Q Consensus        87 l   87 (90)
                      +
T Consensus       231 ~  231 (332)
T 2igt_A          231 T  231 (332)
T ss_dssp             E
T ss_pred             E
Confidence            7

>2jjq_A Uncharacterized RNA methyltransferase pyrab10780; metal-binding, tRNA methyltransferase, S-adenosyl-L-methionine, iron, 4Fe-4S, iron-sulfur; HET: SAH; 1.8A {Pyrococcus abyssi} PDB: 2vs1_A*

Probab=98.92  E-value=3.8e-09  Score=74.00  Aligned_cols=63  Identities=17%  Similarity=0.171  Sum_probs=53.6

Q ss_pred             CCCeEEEecCCchHHHHHHHHHCCCCeEEEeeh-HHHHHhCCCC------CCeeEEEecCCCCCC-cccEEEee
Q 034578           23 NIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDL-QHVIATAPTH------EGVSHVGGDMFDAIP-NADAVFMK   88 (90)
Q Consensus        23 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~------~rv~~~~~d~~~~~p-~~D~i~l~   88 (90)
                      +..+|||+|||+|.++..+++.  ..+++++|+ +.+++.|+++      . ++|+.+|+.+.++ .+|+|++.
T Consensus       290 ~~~~VLDlgcG~G~~sl~la~~--~~~V~gvD~s~~ai~~A~~n~~~ngl~-v~~~~~d~~~~~~~~fD~Vv~d  360 (425)
T 2jjq_A          290 EGEKILDMYSGVGTFGIYLAKR--GFNVKGFDSNEFAIEMARRNVEINNVD-AEFEVASDREVSVKGFDTVIVD  360 (425)
T ss_dssp             CSSEEEEETCTTTHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHHTCC-EEEEECCTTTCCCTTCSEEEEC
T ss_pred             CCCEEEEeeccchHHHHHHHHc--CCEEEEEECCHHHHHHHHHHHHHcCCc-EEEEECChHHcCccCCCEEEEc
Confidence            4679999999999999999986  458999999 9999988762      3 8999999988555 49999874

>2f8l_A Hypothetical protein LMO1582; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE SAM; 2.20A {Listeria monocytogenes} SCOP: c.66.1.45

Probab=98.89  E-value=2.5e-09  Score=72.56  Aligned_cols=66  Identities=17%  Similarity=0.262  Sum_probs=55.4

Q ss_pred             CCCeEEEecCCchHHHHHHHHHCCC-----CeEEEeeh-HHHHHhCCC-----CCCeeEEEecCCCCCC--cccEEEee
Q 034578           23 NIRSMVDVGGGTGTVLAEIVKSYPH-----IKGINFDL-QHVIATAPT-----HEGVSHVGGDMFDAIP--NADAVFMK   88 (90)
Q Consensus        23 ~~~~vlDvG~G~G~~~~~l~~~~p~-----~~~~~~D~-p~~~~~a~~-----~~rv~~~~~d~~~~~p--~~D~i~l~   88 (90)
                      ...+|||+|||+|.++..+++..+.     .+++++|+ |.+++.|+.     ..++.++.+|.+++.+  .+|+|+.+
T Consensus       130 ~~~~VlDp~cGsG~~l~~~~~~~~~~~~~~~~v~GiDi~~~~~~~a~~n~~~~g~~~~i~~~D~l~~~~~~~fD~Ii~N  208 (344)
T 2f8l_A          130 KNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGADLQRQKMTLLHQDGLANLLVDPVDVVISD  208 (344)
T ss_dssp             SEEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHHHHTCCCEEEESCTTSCCCCCCEEEEEEE
T ss_pred             CCCEEEeCCCCccHHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHHHHhCCCCceEEECCCCCccccCCccEEEEC
Confidence            4579999999999999999998765     78999999 999988875     2368999999988543  39999875

>4e2x_A TCAB9; kijanose, tetronitrose, tetradeoxy sugar, sugar methylation, transferase; HET: SAH TYD; 1.40A {Micromonospora chalcea} PDB: 3ndi_A* 3ndj_A* 4e32_A* 4e33_A* 4e2y_A* 4e31_A* 4e2w_A* 4e2z_A* 4e30_A*

Probab=98.89  E-value=1.1e-09  Score=75.65  Aligned_cols=80  Identities=16%  Similarity=0.233  Sum_probs=56.7

Q ss_pred             hhhhHHHHHhhcccCCCCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeeh-HHHHHhCCCCCCeeEEEecCC----C--
Q 034578            5 TKITMKAFVSHYKVDGFNNIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDL-QHVIATAPTHEGVSHVGGDMF----D--   77 (90)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~~rv~~~~~d~~----~--   77 (90)
                      .+..++.+++.+.   ..+..+|||||||+|.++..++++  ..+++++|+ +.+++.+++. .+......+.    +  
T Consensus        92 ~~~~~~~l~~~~~---~~~~~~VLDiGcG~G~~~~~l~~~--g~~v~gvD~s~~~~~~a~~~-~~~~~~~~~~~~~~~~l  165 (416)
T 4e2x_A           92 FAMLARDFLATEL---TGPDPFIVEIGCNDGIMLRTIQEA--GVRHLGFEPSSGVAAKAREK-GIRVRTDFFEKATADDV  165 (416)
T ss_dssp             HHHHHHHHHHTTT---CSSSCEEEEETCTTTTTHHHHHHT--TCEEEEECCCHHHHHHHHTT-TCCEECSCCSHHHHHHH
T ss_pred             HHHHHHHHHHHhC---CCCCCEEEEecCCCCHHHHHHHHc--CCcEEEECCCHHHHHHHHHc-CCCcceeeechhhHhhc
Confidence            3445666777666   556789999999999999999987  458999999 9999988775 2333222121    1  


Q ss_pred             CCC--cccEEEeecC
Q 034578           78 AIP--NADAVFMKVA   90 (90)
Q Consensus        78 ~~p--~~D~i~l~~v   90 (90)
                      +++  .||+|++.++
T Consensus       166 ~~~~~~fD~I~~~~v  180 (416)
T 4e2x_A          166 RRTEGPANVIYAANT  180 (416)
T ss_dssp             HHHHCCEEEEEEESC
T ss_pred             ccCCCCEEEEEECCh
Confidence            122  3999998764

>2g72_A Phenylethanolamine N-methyltransferase; HET: SAM F21; 2.00A {Homo sapiens} SCOP: c.66.1.15 PDB: 1yz3_A* 2an4_A* 2an5_A* 2g70_A* 2g71_A* 2an3_A* 2g8n_A* 2ony_A* 3hcb_A* 3hcc_A* 3hcd_A* 3hcf_A* 3kpj_A* 3kpu_A* 3kpv_A* 3kpw_A* 3kpy_A* 3kqm_A* 3kqo_A* 3kqp_A* ...

Probab=98.89  E-value=6.3e-10  Score=73.43  Aligned_cols=54  Identities=11%  Similarity=0.137  Sum_probs=36.7

Q ss_pred             HHHHHhhcccCCCCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeeh-HHHHHhCCC
Q 034578            9 MKAFVSHYKVDGFNNIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDL-QHVIATAPT   64 (90)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~   64 (90)
                      .+.+.+.+.. ...+..+|||||||+|.+. .++...+..+++++|+ |.+++.+++
T Consensus        58 ~~~l~~~l~~-~~~~~~~vLDiGcG~G~~~-~l~~~~~~~~v~gvD~s~~~l~~a~~  112 (289)
T 2g72_A           58 LRCLAQTFAT-GEVSGRTLIDIGSGPTVYQ-LLSACSHFEDITMTDFLEVNRQELGR  112 (289)
T ss_dssp             HHHHHHHHHT-SCSCCSEEEEETCTTCCGG-GTTGGGGCSEEEEECSCHHHHHHHHH
T ss_pred             HHHHHHHhCC-CCCCCCeEEEECCCcChHH-HHhhccCCCeEEEeCCCHHHHHHHHH
Confidence            4445555431 0124579999999999944 3444445679999999 999987654

>2r6z_A UPF0341 protein in RSP 3' region; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 1.80A {Neisseria gonorrhoeae}

Probab=98.89  E-value=5.1e-10  Score=73.85  Aligned_cols=65  Identities=14%  Similarity=0.159  Sum_probs=53.3

Q ss_pred             CCCCeEEEecCCchHHHHHHHHHCCCCeEEEeeh-H-------HHHHhCCCC-------CCeeEEEecCCCC---CC---
Q 034578           22 NNIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDL-Q-------HVIATAPTH-------EGVSHVGGDMFDA---IP---   80 (90)
Q Consensus        22 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-p-------~~~~~a~~~-------~rv~~~~~d~~~~---~p---   80 (90)
                      .+..+|||+|||+|.++..+++.  ..+++++|+ |       .+++.++++       .|++++.+|+.+.   ++   
T Consensus        82 ~~~~~VLDlgcG~G~~a~~lA~~--g~~V~~vD~s~~~~~ll~~~l~~a~~n~~~~~~~~ri~~~~~d~~~~l~~~~~~~  159 (258)
T 2r6z_A           82 TAHPTVWDATAGLGRDSFVLASL--GLTVTAFEQHPAVACLLSDGIRRALLNPETQDTAARINLHFGNAAEQMPALVKTQ  159 (258)
T ss_dssp             GGCCCEEETTCTTCHHHHHHHHT--TCCEEEEECCHHHHHHHHHHHHHHHHSHHHHHHHTTEEEEESCHHHHHHHHHHHH
T ss_pred             CCcCeEEEeeCccCHHHHHHHHh--CCEEEEEECChhhhHHHHHHHHHHHhHHHhhCCccCeEEEECCHHHHHHhhhccC
Confidence            34578999999999999999996  568999999 9       888888653       5699999998762   32   


Q ss_pred             -cccEEEee
Q 034578           81 -NADAVFMK   88 (90)
Q Consensus        81 -~~D~i~l~   88 (90)
                       .+|+|++.
T Consensus       160 ~~fD~V~~d  168 (258)
T 2r6z_A          160 GKPDIVYLD  168 (258)
T ss_dssp             CCCSEEEEC
T ss_pred             CCccEEEEC
Confidence             38999984

>2yx1_A Hypothetical protein MJ0883; methyl transferase, tRNA modification enzyme, transferase; HET: SFG; 2.20A {Methanocaldococcus jannaschii} PDB: 2zzn_A* 3ay0_A* 2zzm_A*

Probab=98.87  E-value=2.5e-09  Score=72.60  Aligned_cols=63  Identities=19%  Similarity=0.187  Sum_probs=53.9

Q ss_pred             CCCeEEEecCCchHHHHHHHHHCCCCeEEEeeh-HHHHHhCCCC-------CCeeEEEecCCCCCCcccEEEee
Q 034578           23 NIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDL-QHVIATAPTH-------EGVSHVGGDMFDAIPNADAVFMK   88 (90)
Q Consensus        23 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~-------~rv~~~~~d~~~~~p~~D~i~l~   88 (90)
                      +..+|||+|||+|.++.. ++  ...+++++|+ |.+++.++++       ++++++.+|+++.+..+|+|++.
T Consensus       195 ~~~~VLDlg~G~G~~~l~-a~--~~~~V~~vD~s~~ai~~a~~n~~~n~l~~~v~~~~~D~~~~~~~fD~Vi~d  265 (336)
T 2yx1_A          195 LNDVVVDMFAGVGPFSIA-CK--NAKKIYAIDINPHAIELLKKNIKLNKLEHKIIPILSDVREVDVKGNRVIMN  265 (336)
T ss_dssp             TTCEEEETTCTTSHHHHH-TT--TSSEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCGGGCCCCEEEEEEC
T ss_pred             CCCEEEEccCccCHHHHh-cc--CCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECChHHhcCCCcEEEEC
Confidence            567999999999999999 77  5788999999 9999988762       57999999998855459999985

>2aot_A HMT, histamine N-methyltransferase; classic methyltransferase fold, protein-drug complex; HET: CSO 2PM SAH; 1.90A {Homo sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A* 2aov_A* 2aox_A* 1jqe_A* 2aow_A*

Probab=98.86  E-value=1.8e-09  Score=71.47  Aligned_cols=68  Identities=18%  Similarity=0.192  Sum_probs=46.5

Q ss_pred             CCCeEEEecCCchHHHH----HHHHHCCCCeE--EEeeh-HHHHHhCCCC-------CCeeE--EEecCCC-C------C
Q 034578           23 NIRSMVDVGGGTGTVLA----EIVKSYPHIKG--INFDL-QHVIATAPTH-------EGVSH--VGGDMFD-A------I   79 (90)
Q Consensus        23 ~~~~vlDvG~G~G~~~~----~l~~~~p~~~~--~~~D~-p~~~~~a~~~-------~rv~~--~~~d~~~-~------~   79 (90)
                      +..+|||||||+|.++.    .++.++|+.++  +++|. +.|++.+++.       +++++  ..++..+ +      +
T Consensus        52 ~~~~VLDiG~GtG~~~~~~l~~l~~~~~~~~v~~~~vD~S~~ml~~a~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~  131 (292)
T 2aot_A           52 SEIKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKTSNLENVKFAWHKETSSEYQSRMLEKK  131 (292)
T ss_dssp             SEEEEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECSCHHHHHHHHHHHHTCSSCTTEEEEEECSCHHHHHHHHHTTT
T ss_pred             CCCeEEEEcCCCCHHHHHHHHHHHhhCCCceeeEEEEeCCHHHHHHHHHHHHhccCCCcceEEEEecchhhhhhhhcccc
Confidence            45689999999997654    45566788855  99999 9999877541       34444  3444422 1      2


Q ss_pred             C-c-ccEEEeecC
Q 034578           80 P-N-ADAVFMKVA   90 (90)
Q Consensus        80 p-~-~D~i~l~~v   90 (90)
                      + . ||+|+++++
T Consensus       132 ~~~~fD~V~~~~~  144 (292)
T 2aot_A          132 ELQKWDFIHMIQM  144 (292)
T ss_dssp             CCCCEEEEEEESC
T ss_pred             CCCceeEEEEeee
Confidence            2 3 999998764

>2a14_A Indolethylamine N-methyltransferase; SGC,INMT, structural genomics, structural genomics consortium; HET: SAH; 1.70A {Homo sapiens} SCOP: c.66.1.15

Probab=98.85  E-value=6e-10  Score=72.98  Aligned_cols=67  Identities=15%  Similarity=0.109  Sum_probs=48.5

Q ss_pred             CCCCeEEEecCCchHHHHHHHHHCCCCeEEEeeh-HHHHHhCCCC-----------------------------------
Q 034578           22 NNIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDL-QHVIATAPTH-----------------------------------   65 (90)
Q Consensus        22 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~-----------------------------------   65 (90)
                      .+..+|||||||+|.++..+++.. ..+++++|+ |.+++.+++.                                   
T Consensus        54 ~~g~~vLDiGCG~G~~~~~~~~~~-~~~v~g~D~s~~~l~~a~~~~~~~~~~~d~s~~~~~~~~~~~~~~~~~~~~~~~~  132 (263)
T 2a14_A           54 LQGDTLIDIGSGPTIYQVLAACDS-FQDITLSDFTDRNREELEKWLKKEPGAYDWTPAVKFACELEGNSGRWEEKEEKLR  132 (263)
T ss_dssp             CCEEEEEESSCTTCCGGGTTGGGT-EEEEEEEESCHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHTTCGGGHHHHHHHHH
T ss_pred             CCCceEEEeCCCccHHHHHHHHhh-hcceeeccccHHHHHHHHHHHhcCCCcccchHHHHHHHhcCCCCcchhhHHHHHH
Confidence            355789999999998877665542 136999999 9999976531                                   


Q ss_pred             CCee-EEEecCCCC--C-----CcccEEEeec
Q 034578           66 EGVS-HVGGDMFDA--I-----PNADAVFMKV   89 (90)
Q Consensus        66 ~rv~-~~~~d~~~~--~-----p~~D~i~l~~   89 (90)
                      .+++ ++.+|+.+.  +     +.||+|+++.
T Consensus       133 ~~i~~~~~~D~~~~~~~~~~~~~~fD~V~~~~  164 (263)
T 2a14_A          133 AAVKRVLKCDVHLGNPLAPAVLPLADCVLTLL  164 (263)
T ss_dssp             HHEEEEEECCTTSSSTTTTCCCCCEEEEEEES
T ss_pred             hhhheEEeccccCCCCCCccccCCCCEeeehH
Confidence            1233 889999873  2     2499999874

>2zfu_A Nucleomethylin, cerebral protein 1; nucleolar protein, SAM-binding protein, protein structure, N phosphoprotein, nuclear protein; HET: SAH; 2.00A {Homo sapiens}

Probab=98.84  E-value=6.5e-09  Score=65.61  Aligned_cols=64  Identities=16%  Similarity=0.133  Sum_probs=48.1

Q ss_pred             HHHhhcccCCCCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeeh-HHHHHhCCCCCCeeEEEecCCC-CCCc--ccEEE
Q 034578           11 AFVSHYKVDGFNNIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDL-QHVIATAPTHEGVSHVGGDMFD-AIPN--ADAVF   86 (90)
Q Consensus        11 ~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~~rv~~~~~d~~~-~~p~--~D~i~   86 (90)
                      .+++.+..  ..+..+|||+|||+|.++..++     .+++++|+ +.         ++++..+|+.+ +++.  +|+|+
T Consensus        57 ~~~~~l~~--~~~~~~vLDiG~G~G~~~~~l~-----~~v~~~D~s~~---------~~~~~~~d~~~~~~~~~~fD~v~  120 (215)
T 2zfu_A           57 RIARDLRQ--RPASLVVADFGCGDCRLASSIR-----NPVHCFDLASL---------DPRVTVCDMAQVPLEDESVDVAV  120 (215)
T ss_dssp             HHHHHHHT--SCTTSCEEEETCTTCHHHHHCC-----SCEEEEESSCS---------STTEEESCTTSCSCCTTCEEEEE
T ss_pred             HHHHHHhc--cCCCCeEEEECCcCCHHHHHhh-----ccEEEEeCCCC---------CceEEEeccccCCCCCCCEeEEE
Confidence            34444442  3456799999999999998873     67999998 54         67889999987 5543  89999


Q ss_pred             eecC
Q 034578           87 MKVA   90 (90)
Q Consensus        87 l~~v   90 (90)
                      +.++
T Consensus       121 ~~~~  124 (215)
T 2zfu_A          121 FCLS  124 (215)
T ss_dssp             EESC
T ss_pred             Eehh
Confidence            8753

>3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A*

Probab=98.83  E-value=5.7e-09  Score=77.01  Aligned_cols=83  Identities=20%  Similarity=0.123  Sum_probs=65.7

Q ss_pred             cchhhhHHHHHhhcccCCCCCCCeEEEecCCchHHHHHHHHH--------------------------------------
Q 034578            3 CTTKITMKAFVSHYKVDGFNNIRSMVDVGGGTGTVLAEIVKS--------------------------------------   44 (90)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~--------------------------------------   44 (90)
                      .+.+.++..++....   +.+...++|.+||||.++++.+..                                      
T Consensus       173 pl~e~LAa~ll~~~~---~~~~~~llDP~CGSGt~lIeAa~~a~~~apG~~R~~f~fe~w~~~~~~~w~~~~~ea~~~~~  249 (703)
T 3v97_A          173 PIKETLAAAIVMRSG---WQPGTPLLDPMCGSGTLLIEAAMLATDRAPGLHRGRWGFSGWAQHDEAIWQEVKAEAQTRAR  249 (703)
T ss_dssp             SSCHHHHHHHHHHTT---CCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCCTTTTBTTCCHHHHHHHHHHHHHHHH
T ss_pred             CCcHHHHHHHHHhhC---CCCCCeEEecCCCCcHHHHHHHHHHhhcCCCCCccccchhhcccCCHHHHHHHHHHHHHHhh
Confidence            345677888888777   456788999999999999998865                                      


Q ss_pred             ----CCCCeEEEeeh-HHHHHhCCCC-------CCeeEEEecCCC-CCC----cccEEEee
Q 034578           45 ----YPHIKGINFDL-QHVIATAPTH-------EGVSHVGGDMFD-AIP----NADAVFMK   88 (90)
Q Consensus        45 ----~p~~~~~~~D~-p~~~~~a~~~-------~rv~~~~~d~~~-~~p----~~D~i~l~   88 (90)
                          .+..+++++|+ |.+++.|+++       ++++|..+|+.+ ..|    .+|+|+.+
T Consensus       250 ~~~~~~~~~i~G~Did~~av~~A~~N~~~agv~~~i~~~~~D~~~~~~~~~~~~~d~Iv~N  310 (703)
T 3v97_A          250 KGLAEYSSHFYGSDSDARVIQRARTNARLAGIGELITFEVKDVAQLTNPLPKGPYGTVLSN  310 (703)
T ss_dssp             HHHHHCCCCEEEEESCHHHHHHHHHHHHHTTCGGGEEEEECCGGGCCCSCTTCCCCEEEEC
T ss_pred             hccccCCccEEEEECCHHHHHHHHHHHHHcCCCCceEEEECChhhCccccccCCCCEEEeC
Confidence                23468999999 9999988762       469999999987 222    48999875

>3sso_A Methyltransferase; macrolide, natural product, rossman fold; HET: SAH; 1.90A {Micromonospora griseorubida} PDB: 3ssn_A* 3ssm_A*

Probab=98.83  E-value=4e-09  Score=73.81  Aligned_cols=74  Identities=19%  Similarity=0.257  Sum_probs=55.2

Q ss_pred             hHHHHHhhcccCCCCCCCeEEEecCC------chHHHHHHHHH-CCCCeEEEeeh-HHHHHhCCCCCCeeEEEecCCC-C
Q 034578            8 TMKAFVSHYKVDGFNNIRSMVDVGGG------TGTVLAEIVKS-YPHIKGINFDL-QHVIATAPTHEGVSHVGGDMFD-A   78 (90)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~~vlDvG~G------~G~~~~~l~~~-~p~~~~~~~D~-p~~~~~a~~~~rv~~~~~d~~~-~   78 (90)
                      ..+.+++.+.    .+..+|||||||      +|..+..++++ +|+.+++++|+ |.+.   ...++++|+.+|..+ +
T Consensus       205 ~Ye~lL~~l~----~~~~rVLDIGCG~~~~~~TGG~Sl~la~~~fP~a~V~GVDiSp~m~---~~~~rI~fv~GDa~dlp  277 (419)
T 3sso_A          205 HYDRHFRDYR----NQQVRVLEIGVGGYKHPEWGGGSLRMWKSFFPRGQIYGLDIMDKSH---VDELRIRTIQGDQNDAE  277 (419)
T ss_dssp             HHHHHHGGGT----TSCCEEEEECCSCTTCSSCCCHHHHHHHHHCTTCEEEEEESSCCGG---GCBTTEEEEECCTTCHH
T ss_pred             HHHHHHHhhc----CCCCEEEEEecCCCcCCCCCHHHHHHHHHhCCCCEEEEEECCHHHh---hcCCCcEEEEecccccc
Confidence            3455555554    246899999999      66667777765 69999999999 8773   245789999999987 3


Q ss_pred             CC--------cccEEEee
Q 034578           79 IP--------NADAVFMK   88 (90)
Q Consensus        79 ~p--------~~D~i~l~   88 (90)
                      ++        .||+|+..
T Consensus       278 f~~~l~~~d~sFDlVisd  295 (419)
T 3sso_A          278 FLDRIARRYGPFDIVIDD  295 (419)
T ss_dssp             HHHHHHHHHCCEEEEEEC
T ss_pred             hhhhhhcccCCccEEEEC
Confidence            33        39999863

>2vdw_A Vaccinia virus capping enzyme D1 subunit; nucleotidyltransferase, S-adenosyl-L-methionine, RNA metabolism, mRNA processing, methyltransferase, poxvirus; HET: SAH; 2.70A {Vaccinia virus}

Probab=98.83  E-value=5.1e-09  Score=70.29  Aligned_cols=65  Identities=12%  Similarity=0.090  Sum_probs=47.8

Q ss_pred             CCCeEEEecCCchHHHHHHHHHCCCCeEEEeeh-HHHHHhCCCC-----C-------CeeEEEecCCC---------CCC
Q 034578           23 NIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDL-QHVIATAPTH-----E-------GVSHVGGDMFD---------AIP   80 (90)
Q Consensus        23 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~-----~-------rv~~~~~d~~~---------~~p   80 (90)
                      ...+|||||||+|..+..+++. ...+++++|+ +.|++.|++.     .       +++|...|+..         +++
T Consensus        48 ~~~~VLDlGCG~G~~l~~~~~~-~~~~v~GiD~S~~~l~~A~~~~~~~~~~~~~~~~~~~f~~~d~~~d~~~~~l~~~~~  126 (302)
T 2vdw_A           48 NKRKVLAIDFGNGADLEKYFYG-EIALLVATDPDADAIARGNERYNKLNSGIKTKYYKFDYIQETIRSDTFVSSVREVFY  126 (302)
T ss_dssp             SCCEEEETTCTTTTTHHHHHHT-TCSEEEEEESCHHHHHHHHHHHHHHCC----CCCEEEEEECCTTSSSHHHHHHTTCC
T ss_pred             CCCeEEEEecCCcHhHHHHHhc-CCCeEEEEECCHHHHHHHHHHHHhccccccccccccchhhhhcccchhhhhhhcccc
Confidence            3578999999999877666654 3568999999 9999998762     1       25677777721         233


Q ss_pred             --cccEEEee
Q 034578           81 --NADAVFMK   88 (90)
Q Consensus        81 --~~D~i~l~   88 (90)
                        .+|+|++.
T Consensus       127 ~~~FD~V~~~  136 (302)
T 2vdw_A          127 FGKFNIIDWQ  136 (302)
T ss_dssp             SSCEEEEEEE
T ss_pred             CCCeeEEEEC
Confidence              39999865

>3opn_A Putative hemolysin; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics, nysgxrc; 2.05A {Lactococcus lactis subsp}

Probab=98.83  E-value=6.5e-10  Score=72.24  Aligned_cols=53  Identities=13%  Similarity=0.197  Sum_probs=40.2

Q ss_pred             HHHHHhhcccCCCCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeeh-HHHHHhCCC
Q 034578            9 MKAFVSHYKVDGFNNIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDL-QHVIATAPT   64 (90)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~   64 (90)
                      .+.+++.+..  .....+|||||||+|.++..++++ ...+++++|+ |.|++.+++
T Consensus        25 L~~~L~~~~~--~~~g~~VLDiGcGtG~~t~~la~~-g~~~V~gvDis~~ml~~a~~   78 (232)
T 3opn_A           25 LEKALKEFHL--EINGKTCLDIGSSTGGFTDVMLQN-GAKLVYALDVGTNQLAWKIR   78 (232)
T ss_dssp             HHHHHHHTTC--CCTTCEEEEETCTTSHHHHHHHHT-TCSEEEEECSSCCCCCHHHH
T ss_pred             HHHHHHHcCC--CCCCCEEEEEccCCCHHHHHHHhc-CCCEEEEEcCCHHHHHHHHH
Confidence            4555666651  234569999999999999999987 3359999999 888777543

>2yxl_A PH0851 protein, 450AA long hypothetical FMU protein; FMU-homolog, methyltransferase, structural genomics, NPPSFA; HET: SFG; 2.55A {Pyrococcus horikoshii}

Probab=98.81  E-value=1.4e-08  Score=71.30  Aligned_cols=67  Identities=18%  Similarity=0.159  Sum_probs=56.1

Q ss_pred             CCCCCeEEEecCCchHHHHHHHHHCCC-CeEEEeeh-HHHHHhCCC------CCCeeEEEecCCC-C--CC-c-ccEEEe
Q 034578           21 FNNIRSMVDVGGGTGTVLAEIVKSYPH-IKGINFDL-QHVIATAPT------HEGVSHVGGDMFD-A--IP-N-ADAVFM   87 (90)
Q Consensus        21 ~~~~~~vlDvG~G~G~~~~~l~~~~p~-~~~~~~D~-p~~~~~a~~------~~rv~~~~~d~~~-~--~p-~-~D~i~l   87 (90)
                      ..+..+|||+|||+|..+..+++..++ .+++++|+ +.+++.+++      ..+++++.+|+.+ +  ++ . ||+|++
T Consensus       257 ~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~a~D~s~~~l~~~~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~fD~Vl~  336 (450)
T 2yxl_A          257 PKPGETVVDLAAAPGGKTTHLAELMKNKGKIYAFDVDKMRMKRLKDFVKRMGIKIVKPLVKDARKAPEIIGEEVADKVLL  336 (450)
T ss_dssp             CCTTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHTTCCSEEEECSCTTCCSSSSCSSCEEEEEE
T ss_pred             CCCcCEEEEeCCCccHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCCcEEEEEcChhhcchhhccCCCCEEEE
Confidence            455679999999999999999999887 89999999 888887764      2479999999977 2  44 3 899986

>3bt7_A TRNA (uracil-5-)-methyltransferase; methyluridine, methyltransferase, TRMA, RUMT; HET: 5MU; 2.43A {Escherichia coli}

Probab=98.80  E-value=2.7e-09  Score=73.23  Aligned_cols=66  Identities=9%  Similarity=0.119  Sum_probs=51.3

Q ss_pred             hhhHHHHHhhcccCCCCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeeh-HHHHHhCCCC------CCeeEEEecCCC
Q 034578            6 KITMKAFVSHYKVDGFNNIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDL-QHVIATAPTH------EGVSHVGGDMFD   77 (90)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~------~rv~~~~~d~~~   77 (90)
                      +.+.+.+++..+   .. ..+|||+|||+|.++..+++..  .+++++|+ |.+++.|+++      ++++|+.+|..+
T Consensus       200 ~~l~~~~~~~~~---~~-~~~vLDl~cG~G~~~l~la~~~--~~V~gvd~~~~ai~~a~~n~~~ng~~~v~~~~~d~~~  272 (369)
T 3bt7_A          200 IQMLEWALDVTK---GS-KGDLLELYCGNGNFSLALARNF--DRVLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEE  272 (369)
T ss_dssp             HHHHHHHHHHTT---TC-CSEEEEESCTTSHHHHHHGGGS--SEEEEECCCHHHHHHHHHHHHHTTCCSEEEECCCSHH
T ss_pred             HHHHHHHHHHhh---cC-CCEEEEccCCCCHHHHHHHhcC--CEEEEEECCHHHHHHHHHHHHHcCCCceEEEECCHHH
Confidence            344555555554   33 4689999999999999998853  58999999 9999988752      589999999865

>2p41_A Type II methyltransferase; vizier, viral enzymes involved in replication, dengue virus methyltransferase, structural genomics; HET: G1G SAH CIT; 1.80A {Dengue virus 2} SCOP: c.66.1.25 PDB: 2p1d_A* 1l9k_A* 2p3o_A* 2p3q_A* 2p40_A* 2p3l_A* 1r6a_A*

Probab=98.79  E-value=1.1e-08  Score=68.79  Aligned_cols=65  Identities=17%  Similarity=0.072  Sum_probs=48.4

Q ss_pred             CCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeeh-----HHHHHhCCC--C--CCeeEEEe-cCCC-CCCcccEEEee
Q 034578           21 FNNIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDL-----QHVIATAPT--H--EGVSHVGG-DMFD-AIPNADAVFMK   88 (90)
Q Consensus        21 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-----p~~~~~a~~--~--~rv~~~~~-d~~~-~~p~~D~i~l~   88 (90)
                      +.+..+|||||||+|.++..++++   .+++++|+     +.+++..+.  .  ++++++.+ |+.+ +...+|+|++.
T Consensus        80 ~~~g~~VLDlGcG~G~~s~~la~~---~~V~gvD~~~~~~~~~~~~~~~~~~~~~~v~~~~~~D~~~l~~~~fD~V~sd  155 (305)
T 2p41_A           80 VTPEGKVVDLGCGRGGWSYYCGGL---KNVREVKGLTKGGPGHEEPIPMSTYGWNLVRLQSGVDVFFIPPERCDTLLCD  155 (305)
T ss_dssp             SCCCEEEEEETCTTSHHHHHHHTS---TTEEEEEEECCCSTTSCCCCCCCSTTGGGEEEECSCCTTTSCCCCCSEEEEC
T ss_pred             CCCCCEEEEEcCCCCHHHHHHHhc---CCEEEEeccccCchhHHHHHHhhhcCCCCeEEEeccccccCCcCCCCEEEEC
Confidence            455679999999999999999987   47899997     433332221  2  57999999 9877 33349999873

>2b78_A Hypothetical protein SMU.776; structure genomics, methyltransferase, caries, structural genomics, unknown function; 2.00A {Streptococcus mutans} SCOP: b.122.1.9 c.66.1.51 PDB: 3ldf_A*

Probab=98.77  E-value=2.7e-09  Score=73.71  Aligned_cols=64  Identities=16%  Similarity=0.129  Sum_probs=52.5

Q ss_pred             CCCeEEEecCCchHHHHHHHHHCCCCeEEEeeh-HHHHHhCCCC-------C-CeeEEEecCCCCC------C-cccEEE
Q 034578           23 NIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDL-QHVIATAPTH-------E-GVSHVGGDMFDAI------P-NADAVF   86 (90)
Q Consensus        23 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~-------~-rv~~~~~d~~~~~------p-~~D~i~   86 (90)
                      +..+|||+|||+|.++..+++.. ..+++++|+ |.+++.|+++       + +++++.+|+++.+      . .+|+|+
T Consensus       212 ~~~~VLDl~cGtG~~sl~la~~g-a~~V~~vD~s~~al~~A~~N~~~n~~~~~~v~~~~~D~~~~l~~~~~~~~~fD~Ii  290 (385)
T 2b78_A          212 AGKTVLNLFSYTAAFSVAAAMGG-AMATTSVDLAKRSRALSLAHFEANHLDMANHQLVVMDVFDYFKYARRHHLTYDIII  290 (385)
T ss_dssp             BTCEEEEETCTTTHHHHHHHHTT-BSEEEEEESCTTHHHHHHHHHHHTTCCCTTEEEEESCHHHHHHHHHHTTCCEEEEE
T ss_pred             CCCeEEEEeeccCHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHHcCCCccceEEEECCHHHHHHHHHHhCCCccEEE
Confidence            45799999999999999999863 348999999 9999988752       2 8999999987622      1 489999


Q ss_pred             e
Q 034578           87 M   87 (90)
Q Consensus        87 l   87 (90)
                      +
T Consensus       291 ~  291 (385)
T 2b78_A          291 I  291 (385)
T ss_dssp             E
T ss_pred             E
Confidence            7

>1sqg_A SUN protein, FMU protein; rossmann-fold, mixed beta sheet, methyltransferase-fold, RNA-binding domain; 1.65A {Escherichia coli} SCOP: a.79.1.3 c.66.1.38 PDB: 1sqf_A

Probab=98.76  E-value=1.6e-08  Score=70.60  Aligned_cols=67  Identities=13%  Similarity=0.167  Sum_probs=55.4

Q ss_pred             CCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeeh-HHHHHhCCC-----CCCeeEEEecCCCC---CC--cccEEEe
Q 034578           21 FNNIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDL-QHVIATAPT-----HEGVSHVGGDMFDA---IP--NADAVFM   87 (90)
Q Consensus        21 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~-----~~rv~~~~~d~~~~---~p--~~D~i~l   87 (90)
                      ..+..+|||+|||+|..+..+++..|+.+++++|+ +.+++.+++     .-+++++.+|+.+.   ++  .||.|++
T Consensus       244 ~~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~~~~~l~~~~~~~~~~g~~~~~~~~D~~~~~~~~~~~~fD~Vl~  321 (429)
T 1sqg_A          244 PQNGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVYDNLKRLGMKATVKQGDGRYPSQWCGEQQFDRILL  321 (429)
T ss_dssp             CCTTCEEEEESCTTCHHHHHHHHHCTTCEEEEEESSTTTHHHHHHHHHHTTCCCEEEECCTTCTHHHHTTCCEEEEEE
T ss_pred             CCCcCeEEEECCCchHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHHcCCCeEEEeCchhhchhhcccCCCCEEEE
Confidence            44567999999999999999999999899999999 888777654     23588999999873   33  3999986

>3o4f_A Spermidine synthase; aminopropyltransferase, polyamine synthase, rossmann fold, P biosynthesis, spermidine biosynthesis, transferase; 2.90A {Escherichia coli}

Probab=98.74  E-value=5.1e-08  Score=65.60  Aligned_cols=65  Identities=15%  Similarity=0.246  Sum_probs=56.4

Q ss_pred             CCCeEEEecCCchHHHHHHHHHCCCCeEEEeeh-HHHHHhCCC-----------CCCeeEEEecCCCCC---Cc-ccEEE
Q 034578           23 NIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDL-QHVIATAPT-----------HEGVSHVGGDMFDAI---PN-ADAVF   86 (90)
Q Consensus        23 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~-----------~~rv~~~~~d~~~~~---p~-~D~i~   86 (90)
                      .+++||=||+|.|..+.++++..|..+++.+|+ |.+++.+++           .+|++++.+|.++.+   ++ ||+|+
T Consensus        83 ~pk~VLIiGgGdG~~~revlk~~~v~~v~~VEID~~Vv~~a~~~lp~~~~~~~~dpRv~v~~~Dg~~~l~~~~~~yDvIi  162 (294)
T 3o4f_A           83 HAKHVLIIGGGDGAMLREVTRHKNVESITMVEIDAGVVSFCRQYLPNHNAGSYDDPRFKLVIDDGVNFVNQTSQTFDVII  162 (294)
T ss_dssp             CCCEEEEESCTTSHHHHHHHTCTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCTTTTTSCSSCCEEEEE
T ss_pred             CCCeEEEECCCchHHHHHHHHcCCcceEEEEcCCHHHHHHHHhcCccccccccCCCcEEEEechHHHHHhhccccCCEEE
Confidence            578999999999999999999888889999999 999988764           489999999998843   22 99998


Q ss_pred             e
Q 034578           87 M   87 (90)
Q Consensus        87 l   87 (90)
                      +
T Consensus       163 ~  163 (294)
T 3o4f_A          163 S  163 (294)
T ss_dssp             E
T ss_pred             E
Confidence            6

>3hp7_A Hemolysin, putative; structural genomics, APC64019, PSI-2, protein STR initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.53A {Streptococcus thermophilus}

Probab=98.72  E-value=2e-08  Score=67.46  Aligned_cols=77  Identities=8%  Similarity=0.118  Sum_probs=51.4

Q ss_pred             HHHHHhhcccCCCCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeeh-HHHHHhC-CCCCCeeEEE-ecCC--C--CCCc
Q 034578            9 MKAFVSHYKVDGFNNIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDL-QHVIATA-PTHEGVSHVG-GDMF--D--AIPN   81 (90)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a-~~~~rv~~~~-~d~~--~--~~p~   81 (90)
                      ...+++.+.-  ..+..++||+|||||.++..++++ +..+++++|+ +.|++.+ ++.+|+.... .|+.  .  .+|.
T Consensus        73 l~~~l~~~~~--~~~g~~vLDiGcGTG~~t~~L~~~-ga~~V~aVDvs~~mL~~a~r~~~rv~~~~~~ni~~l~~~~l~~  149 (291)
T 3hp7_A           73 LEKALAVFNL--SVEDMITIDIGASTGGFTDVMLQN-GAKLVYAVDVGTNQLVWKLRQDDRVRSMEQYNFRYAEPVDFTE  149 (291)
T ss_dssp             HHHHHHHTTC--CCTTCEEEEETCTTSHHHHHHHHT-TCSEEEEECSSSSCSCHHHHTCTTEEEECSCCGGGCCGGGCTT
T ss_pred             HHHHHHhcCC--CccccEEEecCCCccHHHHHHHhC-CCCEEEEEECCHHHHHHHHHhCcccceecccCceecchhhCCC
Confidence            3455566651  224569999999999999999886 5568999999 8888773 4445654433 2332  1  2332


Q ss_pred             --ccEEEee
Q 034578           82 --ADAVFMK   88 (90)
Q Consensus        82 --~D~i~l~   88 (90)
                        +|++++.
T Consensus       150 ~~fD~v~~d  158 (291)
T 3hp7_A          150 GLPSFASID  158 (291)
T ss_dssp             CCCSEEEEC
T ss_pred             CCCCEEEEE
Confidence              7887753

>3ll7_A Putative methyltransferase; methytransferase, structural genomics, MCSG, PSI-2, protein initiative; HET: MSE; 1.80A {Porphyromonas gingivalis}

Probab=98.72  E-value=7.3e-09  Score=72.48  Aligned_cols=64  Identities=19%  Similarity=0.373  Sum_probs=53.1

Q ss_pred             CCCeEEEecCCchHHHHHHHHHCCCCeEEEeeh-HHHHHhCCCC--------CCeeEEEecCCCCC---C--cccEEEee
Q 034578           23 NIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDL-QHVIATAPTH--------EGVSHVGGDMFDAI---P--NADAVFMK   88 (90)
Q Consensus        23 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~--------~rv~~~~~d~~~~~---p--~~D~i~l~   88 (90)
                      ...+|||+|||+|..+..+++.  ..+++++|+ |.+++.++++        ++++++.+|+++.+   +  .||+|++.
T Consensus        93 ~g~~VLDLgcG~G~~al~LA~~--g~~V~~VD~s~~~l~~Ar~N~~~~~~gl~~i~~i~~Da~~~L~~~~~~~fDvV~lD  170 (410)
T 3ll7_A           93 EGTKVVDLTGGLGIDFIALMSK--ASQGIYIERNDETAVAARHNIPLLLNEGKDVNILTGDFKEYLPLIKTFHPDYIYVD  170 (410)
T ss_dssp             TTCEEEESSCSSSHHHHHHHTT--CSEEEEEESCHHHHHHHHHHHHHHSCTTCEEEEEESCGGGSHHHHHHHCCSEEEEC
T ss_pred             CCCEEEEeCCCchHHHHHHHhc--CCEEEEEECCHHHHHHHHHhHHHhccCCCcEEEEECcHHHhhhhccCCCceEEEEC
Confidence            3579999999999999999887  468999999 9999888652        47999999998732   1  38999873

>2okc_A Type I restriction enzyme stysji M protein; NP_813429.1, N-6 DNA methylase, type I restriction enzyme ST protein; HET: SAM; 2.20A {Bacteroides thetaiotaomicron vpi-5482} SCOP: c.66.1.45

Probab=98.71  E-value=1.4e-08  Score=71.11  Aligned_cols=79  Identities=16%  Similarity=0.104  Sum_probs=60.3

Q ss_pred             hhHHHHHhhcccCCCCCCCeEEEecCCchHHHHHHHHHC-------------CCCeEEEeeh-HHHHHhCCCC------C
Q 034578            7 ITMKAFVSHYKVDGFNNIRSMVDVGGGTGTVLAEIVKSY-------------PHIKGINFDL-QHVIATAPTH------E   66 (90)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~-------------p~~~~~~~D~-p~~~~~a~~~------~   66 (90)
                      .+++.+++.+.   .....+|+|.|||+|.++..+.+..             +..+++++|+ |.+++.|+.+      .
T Consensus       158 ~v~~~mv~~l~---~~~~~~VlDpacGsG~fl~~~~~~l~~~~~~~~~~~~~~~~~i~G~Ei~~~~~~lA~~nl~l~g~~  234 (445)
T 2okc_A          158 PLIQAMVDCIN---PQMGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTLASMNLYLHGIG  234 (445)
T ss_dssp             HHHHHHHHHHC---CCTTCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHHHHHHHHHHTTCC
T ss_pred             HHHHHHHHHhC---CCCCCEEeccCCCcchHHHHHHHHHHHhcCCHHHHHhhcCeEEEEEeCCHHHHHHHHHHHHHhCCC
Confidence            44556666555   3455789999999999999998763             4578999999 9998887641      2


Q ss_pred             --CeeEEEecCCCC-CC-cccEEEee
Q 034578           67 --GVSHVGGDMFDA-IP-NADAVFMK   88 (90)
Q Consensus        67 --rv~~~~~d~~~~-~p-~~D~i~l~   88 (90)
                        +..+..+|.+.. .. .+|+|+.+
T Consensus       235 ~~~~~i~~gD~l~~~~~~~fD~Iv~N  260 (445)
T 2okc_A          235 TDRSPIVCEDSLEKEPSTLVDVILAN  260 (445)
T ss_dssp             SSCCSEEECCTTTSCCSSCEEEEEEC
T ss_pred             cCCCCEeeCCCCCCcccCCcCEEEEC
Confidence              788999999883 33 49999875

>2oyr_A UPF0341 protein YHIQ; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Shigella flexneri 2A} SCOP: c.66.1.55 PDB: 2pgx_A 2pkw_A

Probab=98.71  E-value=5.8e-09  Score=68.99  Aligned_cols=74  Identities=14%  Similarity=0.151  Sum_probs=53.6

Q ss_pred             HHHHhhcccCCCCCC--CeEEEecCCchHHHHHHHHHCCCCeEEEeeh-HHH-------HHhCCC----C----CCeeEE
Q 034578           10 KAFVSHYKVDGFNNI--RSMVDVGGGTGTVLAEIVKSYPHIKGINFDL-QHV-------IATAPT----H----EGVSHV   71 (90)
Q Consensus        10 ~~~~~~~~~~~~~~~--~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~-------~~~a~~----~----~rv~~~   71 (90)
                      +.+++.+.   ..+.  .+|||+|||+|..+..++++  ..+++++|. |.+       ++.+++    +    .|++++
T Consensus        76 e~l~~al~---l~~g~~~~VLDl~~G~G~dal~lA~~--g~~V~~vE~~~~~~~l~~~~l~~a~~~~~~~~~l~~~i~~~  150 (258)
T 2oyr_A           76 EAVAKAVG---IKGDYLPDVVDATAGLGRDAFVLASV--GCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLI  150 (258)
T ss_dssp             SHHHHHTT---CBTTBCCCEEETTCTTCHHHHHHHHH--TCCEEEEECCHHHHHHHHHHHHHHHHCTTTHHHHHHHEEEE
T ss_pred             HHHHHHhc---ccCCCCCEEEEcCCcCCHHHHHHHHc--CCEEEEEECCHHHHHHHHHHHHHHHhhHhhhhhhhcCEEEE
Confidence            34444444   3344  78999999999999999998  568999999 754       443321    1    479999


Q ss_pred             EecCCC---CCCc-ccEEEee
Q 034578           72 GGDMFD---AIPN-ADAVFMK   88 (90)
Q Consensus        72 ~~d~~~---~~p~-~D~i~l~   88 (90)
                      .+|..+   .++. +|+|++.
T Consensus       151 ~~D~~~~L~~~~~~fDvV~lD  171 (258)
T 2oyr_A          151 HASSLTALTDITPRPQVVYLD  171 (258)
T ss_dssp             ESCHHHHSTTCSSCCSEEEEC
T ss_pred             ECCHHHHHHhCcccCCEEEEc
Confidence            999865   2343 8999974

>2frx_A Hypothetical protein YEBU; rossmann-type S-adenosylmethionine-dependent methyltransfera domain; 2.90A {Escherichia coli}

Probab=98.70  E-value=3.9e-08  Score=69.83  Aligned_cols=65  Identities=14%  Similarity=0.163  Sum_probs=55.0

Q ss_pred             CCCeEEEecCCchHHHHHHHHHCC-CCeEEEeeh-HHHHHhCCCC------CCeeEEEecCCC-C--CCc-ccEEEe
Q 034578           23 NIRSMVDVGGGTGTVLAEIVKSYP-HIKGINFDL-QHVIATAPTH------EGVSHVGGDMFD-A--IPN-ADAVFM   87 (90)
Q Consensus        23 ~~~~vlDvG~G~G~~~~~l~~~~p-~~~~~~~D~-p~~~~~a~~~------~rv~~~~~d~~~-~--~p~-~D~i~l   87 (90)
                      +..+|||+|||+|..+..+++..+ ..+++++|+ +.+++.++++      .+++++.+|..+ +  .+. ||.|++
T Consensus       117 ~g~~VLDl~aGpG~kt~~lA~~~~~~g~V~avDis~~~l~~~~~n~~r~g~~nv~~~~~D~~~~~~~~~~~fD~Il~  193 (479)
T 2frx_A          117 APQRVMDVAAAPGSKTTQISARMNNEGAILANEFSASRVKVLHANISRCGISNVALTHFDGRVFGAAVPEMFDAILL  193 (479)
T ss_dssp             CCSEEEESSCTTSHHHHHHHHHTTTCSEEEEECSSHHHHHHHHHHHHHHTCCSEEEECCCSTTHHHHSTTCEEEEEE
T ss_pred             CCCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCCHHHhhhhccccCCEEEE
Confidence            567999999999999999999875 589999999 9998887652      579999999977 2  344 999987

>3giw_A Protein of unknown function DUF574; rossmann-fold protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE UNL; 1.45A {Streptomyces avermitilis} PDB: 3go4_A*

Probab=98.70  E-value=1.8e-08  Score=67.31  Aligned_cols=55  Identities=22%  Similarity=0.311  Sum_probs=44.7

Q ss_pred             CCCeEEEecCCc---hHHHHHHHHHCCCCeEEEeeh-HHHHHhCCC------CCCeeEEEecCCC
Q 034578           23 NIRSMVDVGGGT---GTVLAEIVKSYPHIKGINFDL-QHVIATAPT------HEGVSHVGGDMFD   77 (90)
Q Consensus        23 ~~~~vlDvG~G~---G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~------~~rv~~~~~d~~~   77 (90)
                      +..++||||||+   |.+...+.+.+|+.+++++|. |.|++.|++      ..+++|+.+|+.+
T Consensus        78 g~~q~LDLGcG~pT~~~~~~la~~~~P~arVv~VD~sp~mLa~Ar~~l~~~~~~~~~~v~aD~~~  142 (277)
T 3giw_A           78 GIRQFLDIGTGIPTSPNLHEIAQSVAPESRVVYVDNDPIVLTLSQGLLASTPEGRTAYVEADMLD  142 (277)
T ss_dssp             CCCEEEEESCCSCCSSCHHHHHHHHCTTCEEEEEECCHHHHHTTHHHHCCCSSSEEEEEECCTTC
T ss_pred             CCCEEEEeCCCCCcccHHHHHHHHHCCCCEEEEEeCChHHHHHHHHHhccCCCCcEEEEEecccC
Confidence            557999999996   445444455689999999999 999999875      2479999999987

>2as0_A Hypothetical protein PH1915; RNA methyltransferase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} SCOP: b.122.1.9 c.66.1.51

Probab=98.70  E-value=5.2e-09  Score=72.25  Aligned_cols=65  Identities=20%  Similarity=0.202  Sum_probs=53.6

Q ss_pred             CCCeEEEecCCchHHHHHHHHHCCCCeEEEeeh-HHHHHhCCCC-------CCeeEEEecCCCCC------C-cccEEEe
Q 034578           23 NIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDL-QHVIATAPTH-------EGVSHVGGDMFDAI------P-NADAVFM   87 (90)
Q Consensus        23 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~-------~rv~~~~~d~~~~~------p-~~D~i~l   87 (90)
                      +..+|||+|||+|.++..+++. +..+++++|+ |.+++.++++       ++++++.+|+++.+      . .+|+|++
T Consensus       217 ~~~~VLDl~~G~G~~~~~la~~-g~~~v~~vD~s~~~l~~a~~n~~~n~~~~~v~~~~~d~~~~~~~~~~~~~~fD~Vi~  295 (396)
T 2as0_A          217 PGDRVLDVFTYTGGFAIHAAIA-GADEVIGIDKSPRAIETAKENAKLNGVEDRMKFIVGSAFEEMEKLQKKGEKFDIVVL  295 (396)
T ss_dssp             TTCEEEETTCTTTHHHHHHHHT-TCSEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHTTCCEEEEEE
T ss_pred             CCCeEEEecCCCCHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEECCHHHHHHHHHhhCCCCCEEEE
Confidence            5679999999999999999986 4568999999 9999888752       28999999987621      2 3899998


Q ss_pred             e
Q 034578           88 K   88 (90)
Q Consensus        88 ~   88 (90)
                      .
T Consensus       296 d  296 (396)
T 2as0_A          296 D  296 (396)
T ss_dssp             C
T ss_pred             C
Confidence            3

>2k4m_A TR8_protein, UPF0146 protein MTH_1000; alpha+beta, rossman fold, structural genomics, PSI-2; NMR {Methanothermobacterthermautotrophicus str}

Probab=98.69  E-value=4e-08  Score=60.26  Aligned_cols=55  Identities=20%  Similarity=0.145  Sum_probs=45.1

Q ss_pred             CCCeEEEecCCch-HHHHHHHHHCCCCeEEEeeh-HHHHHhCCCCCCeeEEEecCCCCCC----cccEEEe
Q 034578           23 NIRSMVDVGGGTG-TVLAEIVKSYPHIKGINFDL-QHVIATAPTHEGVSHVGGDMFDAIP----NADAVFM   87 (90)
Q Consensus        23 ~~~~vlDvG~G~G-~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~~rv~~~~~d~~~~~p----~~D~i~l   87 (90)
                      ...++||||||+| ..+..|+++ .+..++++|+ |.+++         ++..|+|++..    .||+|+.
T Consensus        35 ~~~rVlEVG~G~g~~vA~~La~~-~g~~V~atDInp~Av~---------~v~dDiF~P~~~~Y~~~DLIYs   95 (153)
T 2k4m_A           35 PGTRVVEVGAGRFLYVSDYIRKH-SKVDLVLTDIKPSHGG---------IVRDDITSPRMEIYRGAALIYS   95 (153)
T ss_dssp             SSSEEEEETCTTCCHHHHHHHHH-SCCEEEEECSSCSSTT---------EECCCSSSCCHHHHTTEEEEEE
T ss_pred             CCCcEEEEccCCChHHHHHHHHh-CCCeEEEEECCccccc---------eEEccCCCCcccccCCcCEEEE
Confidence            4579999999999 699998874 3688999998 87765         88999999654    4899854

>3m6w_A RRNA methylase; rRNA methyltransferase, 5-methylcytidine, RSMF, adoMet, MULT specific, methyltransferase, transferase; HET: CXM SAM; 1.30A {Thermus thermophilus} PDB: 3m6v_A* 3m6u_A* 3m6x_A*

Probab=98.69  E-value=7.1e-09  Score=73.50  Aligned_cols=67  Identities=6%  Similarity=-0.019  Sum_probs=54.4

Q ss_pred             CCCCCeEEEecCCchHHHHHHHHHCCC-CeEEEeeh-HHHHHhCCCC-----CCeeEEEecCCC-C--CCc-ccEEEe
Q 034578           21 FNNIRSMVDVGGGTGTVLAEIVKSYPH-IKGINFDL-QHVIATAPTH-----EGVSHVGGDMFD-A--IPN-ADAVFM   87 (90)
Q Consensus        21 ~~~~~~vlDvG~G~G~~~~~l~~~~p~-~~~~~~D~-p~~~~~a~~~-----~rv~~~~~d~~~-~--~p~-~D~i~l   87 (90)
                      ..+..+|||+|||+|..+..+++..++ .+++++|+ +.+++.++++     -.+.++.+|..+ .  .+. ||+|++
T Consensus        99 ~~~g~~VLDlgaGpG~kt~~LA~~~~~~g~V~AvDis~~~l~~a~~n~~r~G~~v~~~~~Da~~l~~~~~~~FD~Il~  176 (464)
T 3m6w_A           99 PKPGERVLDLAAAPGGKTTHLAARMGGKGLLLANEVDGKRVRGLLENVERWGAPLAVTQAPPRALAEAFGTYFHRVLL  176 (464)
T ss_dssp             CCTTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHCCCCEEECSCHHHHHHHHCSCEEEEEE
T ss_pred             cCCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCeEEEEECCHHHhhhhccccCCEEEE
Confidence            445689999999999999999999865 79999999 9999888752     128899999765 2  344 999986

>3c0k_A UPF0064 protein YCCW; PUA domain, adoMet dependent methyltransferase fold; 2.00A {Escherichia coli K12}

Probab=98.68  E-value=4.8e-09  Score=72.45  Aligned_cols=65  Identities=15%  Similarity=0.181  Sum_probs=53.4

Q ss_pred             CCCeEEEecCCchHHHHHHHHHCCCCeEEEeeh-HHHHHhCCCC-------C-CeeEEEecCCCCC------C-cccEEE
Q 034578           23 NIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDL-QHVIATAPTH-------E-GVSHVGGDMFDAI------P-NADAVF   86 (90)
Q Consensus        23 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~-------~-rv~~~~~d~~~~~------p-~~D~i~   86 (90)
                      +..+|||+|||+|.++..+++.. ..+++++|+ |.+++.++++       . +++++.+|+++.+      . .+|+|+
T Consensus       220 ~~~~VLDl~cG~G~~sl~la~~g-~~~V~~vD~s~~al~~a~~n~~~ngl~~~~v~~~~~D~~~~~~~~~~~~~~fD~Ii  298 (396)
T 3c0k_A          220 ENKRVLNCFSYTGGFAVSALMGG-CSQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYRDRGEKFDVIV  298 (396)
T ss_dssp             TTCEEEEESCTTCSHHHHHHHTT-CSEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEESCHHHHHHHHHHTTCCEEEEE
T ss_pred             CCCeEEEeeccCCHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHHcCCCccceEEEECCHHHHHHHHHhcCCCCCEEE
Confidence            45799999999999999999974 468999999 9999888752       2 7999999987732      2 389998


Q ss_pred             ee
Q 034578           87 MK   88 (90)
Q Consensus        87 l~   88 (90)
                      +.
T Consensus       299 ~d  300 (396)
T 3c0k_A          299 MD  300 (396)
T ss_dssp             EC
T ss_pred             EC
Confidence            74

>1wxx_A TT1595, hypothetical protein TTHA1280; thermus thermophillus, methyltransferase, adoMet, structural genomics; 1.80A {Thermus thermophilus} SCOP: b.122.1.9 c.66.1.51 PDB: 1wxw_A 2cww_A*

Probab=98.66  E-value=4.6e-09  Score=72.31  Aligned_cols=63  Identities=16%  Similarity=0.168  Sum_probs=53.0

Q ss_pred             CCCeEEEecCCchHHHHHHHHHCCCCeEEEeeh-HHHHHhCCCC------CCeeEEEecCCCCC------C-cccEEEe
Q 034578           23 NIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDL-QHVIATAPTH------EGVSHVGGDMFDAI------P-NADAVFM   87 (90)
Q Consensus        23 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~------~rv~~~~~d~~~~~------p-~~D~i~l   87 (90)
                      +..+|||+|||+|.++..+++.  ..+++++|+ |.+++.++++      ++++++.+|+++.+      + .+|+|++
T Consensus       209 ~~~~VLDlg~G~G~~~~~la~~--~~~v~~vD~s~~~~~~a~~n~~~n~~~~~~~~~~d~~~~~~~~~~~~~~fD~Ii~  285 (382)
T 1wxx_A          209 RGERALDVFSYAGGFALHLALG--FREVVAVDSSAEALRRAEENARLNGLGNVRVLEANAFDLLRRLEKEGERFDLVVL  285 (382)
T ss_dssp             CEEEEEEETCTTTHHHHHHHHH--EEEEEEEESCHHHHHHHHHHHHHTTCTTEEEEESCHHHHHHHHHHTTCCEEEEEE
T ss_pred             CCCeEEEeeeccCHHHHHHHHh--CCEEEEEECCHHHHHHHHHHHHHcCCCCceEEECCHHHHHHHHHhcCCCeeEEEE
Confidence            4678999999999999999998  678999999 9999988762      45999999987632      2 3899987

>2b9e_A NOL1/NOP2/SUN domain family, member 5 isoform 2; methytransferase, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.65A {Homo sapiens} SCOP: c.66.1.38

Probab=98.66  E-value=4.8e-08  Score=65.91  Aligned_cols=67  Identities=13%  Similarity=0.130  Sum_probs=54.6

Q ss_pred             CCCCCeEEEecCCchHHHHHHHHHC-CCCeEEEeeh-HHHHHhCCCC------CCeeEEEecCCCC---C---CcccEEE
Q 034578           21 FNNIRSMVDVGGGTGTVLAEIVKSY-PHIKGINFDL-QHVIATAPTH------EGVSHVGGDMFDA---I---PNADAVF   86 (90)
Q Consensus        21 ~~~~~~vlDvG~G~G~~~~~l~~~~-p~~~~~~~D~-p~~~~~a~~~------~rv~~~~~d~~~~---~---p~~D~i~   86 (90)
                      ..+..+|||+|||+|..+..+++.. +..+++++|+ +.+++.++++      .+++++.+|+.+.   .   ..+|.|+
T Consensus       100 ~~~g~~VLDlcaG~G~kt~~la~~~~~~g~V~a~D~~~~~l~~~~~n~~r~g~~~v~~~~~D~~~~~~~~~~~~~fD~Vl  179 (309)
T 2b9e_A          100 PPPGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMATLLARAGVSCCELAEEDFLAVSPSDPRYHEVHYIL  179 (309)
T ss_dssp             CCTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCGGGSCTTCGGGTTEEEEE
T ss_pred             CCCCCEEEEeCCChhHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCChHhcCccccccCCCCEEE
Confidence            4456799999999999999999984 5689999999 9988877652      5799999998762   1   2389998


Q ss_pred             e
Q 034578           87 M   87 (90)
Q Consensus        87 l   87 (90)
                      +
T Consensus       180 ~  180 (309)
T 2b9e_A          180 L  180 (309)
T ss_dssp             E
T ss_pred             E
Confidence            6

>4dmg_A Putative uncharacterized protein TTHA1493; rRNA, methyltransferase, S-adenosyl-methionine, 23S ribosoma transferase; HET: SAM; 1.70A {Thermus thermophilus}

Probab=98.65  E-value=5.3e-08  Score=67.66  Aligned_cols=64  Identities=11%  Similarity=0.088  Sum_probs=50.5

Q ss_pred             CCCeEEEecCCchHHHHHHHHHCCCCeEEEeeh-HHHHHhCCCC-----CCeeEEEecCCCC---CCc-ccEEEee
Q 034578           23 NIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDL-QHVIATAPTH-----EGVSHVGGDMFDA---IPN-ADAVFMK   88 (90)
Q Consensus        23 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~-----~rv~~~~~d~~~~---~p~-~D~i~l~   88 (90)
                      +..+|||+|||+|.++..+++..  .+++++|+ |.+++.++++     -..++..+|.++.   .+. ||+|++.
T Consensus       214 ~g~~VLDlg~GtG~~sl~~a~~g--a~V~avDis~~al~~a~~n~~~ng~~~~~~~~D~~~~l~~~~~~fD~Ii~d  287 (393)
T 4dmg_A          214 PGERVLDVYSYVGGFALRAARKG--AYALAVDKDLEALGVLDQAALRLGLRVDIRHGEALPTLRGLEGPFHHVLLD  287 (393)
T ss_dssp             TTCEEEEESCTTTHHHHHHHHTT--CEEEEEESCHHHHHHHHHHHHHHTCCCEEEESCHHHHHHTCCCCEEEEEEC
T ss_pred             CCCeEEEcccchhHHHHHHHHcC--CeEEEEECCHHHHHHHHHHHHHhCCCCcEEEccHHHHHHHhcCCCCEEEEC
Confidence            36799999999999999999974  45999999 9999988762     1235678998762   233 9999873

>3m4x_A NOL1/NOP2/SUN family protein; mtase domain, PUA domain, RRM motif, transferase; 2.28A {Enterococcus faecium}

Probab=98.64  E-value=9.8e-09  Score=72.61  Aligned_cols=67  Identities=4%  Similarity=0.002  Sum_probs=54.7

Q ss_pred             CCCCCeEEEecCCchHHHHHHHHHCC-CCeEEEeeh-HHHHHhCCC------CCCeeEEEecCCC-C--CCc-ccEEEe
Q 034578           21 FNNIRSMVDVGGGTGTVLAEIVKSYP-HIKGINFDL-QHVIATAPT------HEGVSHVGGDMFD-A--IPN-ADAVFM   87 (90)
Q Consensus        21 ~~~~~~vlDvG~G~G~~~~~l~~~~p-~~~~~~~D~-p~~~~~a~~------~~rv~~~~~d~~~-~--~p~-~D~i~l   87 (90)
                      ..+..+|||+|||+|..+..+++..+ ..+++++|+ +.+++.+++      ..++.++.+|..+ .  .+. ||.|++
T Consensus       103 ~~~g~~VLDlcaGpGgkt~~lA~~~~~~g~V~AvDis~~rl~~~~~n~~r~g~~nv~v~~~Da~~l~~~~~~~FD~Il~  181 (456)
T 3m4x_A          103 AKPGEKVLDLCAAPGGKSTQLAAQMKGKGLLVTNEIFPKRAKILSENIERWGVSNAIVTNHAPAELVPHFSGFFDRIVV  181 (456)
T ss_dssp             CCTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEECSSHHHHHHHHHHHHHHTCSSEEEECCCHHHHHHHHTTCEEEEEE
T ss_pred             CCCCCEEEEECCCcCHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCceEEEeCCHHHhhhhccccCCEEEE
Confidence            44568999999999999999999865 479999999 998888765      2578999998865 2  344 999986

>2dul_A N(2),N(2)-dimethylguanosine tRNA methyltransferas; tRNA modification enzyme, guanine 26, N(2),N(2)-dimethyltran structural genomics; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.58 PDB: 2ejt_A* 2eju_A* 2ytz_A*

Probab=98.56  E-value=3.9e-08  Score=68.00  Aligned_cols=65  Identities=9%  Similarity=-0.037  Sum_probs=53.5

Q ss_pred             CCeEEEecCCchHHHHHHHHHCCCCeEEEeeh-HHHHHhCCC----C-----------------CCeeEEEecCCCC---
Q 034578           24 IRSMVDVGGGTGTVLAEIVKSYPHIKGINFDL-QHVIATAPT----H-----------------EGVSHVGGDMFDA---   78 (90)
Q Consensus        24 ~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~----~-----------------~rv~~~~~d~~~~---   78 (90)
                      ..+|||+|||+|.+++.++++.+..+++++|+ |.+++.+++    +                 .+++++.+|..+.   
T Consensus        48 ~~~VLDl~aGtG~~~l~~a~~~~~~~V~avDi~~~av~~a~~N~~~n~~~~~~~~~~~~~~~gl~~i~v~~~Da~~~~~~  127 (378)
T 2dul_A           48 PKIVLDALSATGIRGIRFALETPAEEVWLNDISEDAYELMKRNVMLNFDGELRESKGRAILKGEKTIVINHDDANRLMAE  127 (378)
T ss_dssp             CSEEEESSCTTSHHHHHHHHHSSCSEEEEEESCHHHHHHHHHHHHHHCCSCCEECSSEEEEESSSEEEEEESCHHHHHHH
T ss_pred             CCEEEECCCchhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHhcccccccccccccccCCCceEEEcCcHHHHHHh
Confidence            57899999999999999999988889999999 999887764    2                 2388999998662   


Q ss_pred             CC-cccEEEee
Q 034578           79 IP-NADAVFMK   88 (90)
Q Consensus        79 ~p-~~D~i~l~   88 (90)
                      .+ .||+|++.
T Consensus       128 ~~~~fD~I~lD  138 (378)
T 2dul_A          128 RHRYFHFIDLD  138 (378)
T ss_dssp             STTCEEEEEEC
T ss_pred             ccCCCCEEEeC
Confidence            23 38999863

>3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A*

Probab=98.56  E-value=1.2e-07  Score=69.98  Aligned_cols=65  Identities=11%  Similarity=0.097  Sum_probs=53.1

Q ss_pred             CCCeEEEecCCchHHHHHHHHHCCCCeEEEeeh-HHHHHhCCCC--------CCeeEEEecCCCC---CC-cccEEEee
Q 034578           23 NIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDL-QHVIATAPTH--------EGVSHVGGDMFDA---IP-NADAVFMK   88 (90)
Q Consensus        23 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~--------~rv~~~~~d~~~~---~p-~~D~i~l~   88 (90)
                      +..+|||+|||+|.++..+++.. ..+++++|+ |.+++.++++        ++++++.+|.++.   .. .||+|++.
T Consensus       539 ~g~~VLDlg~GtG~~sl~aa~~g-a~~V~aVD~s~~al~~a~~N~~~ngl~~~~v~~i~~D~~~~l~~~~~~fD~Ii~D  616 (703)
T 3v97_A          539 KGKDFLNLFSYTGSATVHAGLGG-ARSTTTVDMSRTYLEWAERNLRLNGLTGRAHRLIQADCLAWLREANEQFDLIFID  616 (703)
T ss_dssp             TTCEEEEESCTTCHHHHHHHHTT-CSEEEEEESCHHHHHHHHHHHHHTTCCSTTEEEEESCHHHHHHHCCCCEEEEEEC
T ss_pred             CCCcEEEeeechhHHHHHHHHCC-CCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCHHHHHHhcCCCccEEEEC
Confidence            45799999999999999999853 346999999 9999988762        4799999999873   22 39999973

>1wg8_A Predicted S-adenosylmethionine-dependent methyltransferase; S-adenosyl-methyltransferase, MRAW; HET: SAM; 2.00A {Thermus thermophilus} SCOP: a.60.13.1 c.66.1.23

Probab=98.43  E-value=4.4e-07  Score=60.81  Aligned_cols=76  Identities=16%  Similarity=0.178  Sum_probs=61.7

Q ss_pred             hhHHHHHhhcccCCCCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeeh-HHHHHhCCC--CCCeeEEEecCCC-C--C-
Q 034578            7 ITMKAFVSHYKVDGFNNIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDL-QHVIATAPT--HEGVSHVGGDMFD-A--I-   79 (90)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~--~~rv~~~~~d~~~-~--~-   79 (90)
                      -+.+.+++.+.   ..+...+||.+||.|..+..++++  +.+++++|. |.+++.+++  .+|++++.+||.+ .  + 
T Consensus         9 VLl~e~le~L~---~~~gg~~VD~T~G~GGHS~~il~~--~g~VigiD~Dp~Ai~~A~~L~~~rv~lv~~~f~~l~~~L~   83 (285)
T 1wg8_A            9 VLYQEALDLLA---VRPGGVYVDATLGGAGHARGILER--GGRVIGLDQDPEAVARAKGLHLPGLTVVQGNFRHLKRHLA   83 (285)
T ss_dssp             TTHHHHHHHHT---CCTTCEEEETTCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHTCCTTEEEEESCGGGHHHHHH
T ss_pred             HHHHHHHHhhC---CCCCCEEEEeCCCCcHHHHHHHHC--CCEEEEEeCCHHHHHHHHhhccCCEEEEECCcchHHHHHH
Confidence            34677788777   566789999999999999999998  789999999 999877643  2689999999976 1  2 


Q ss_pred             ----CcccEEEe
Q 034578           80 ----PNADAVFM   87 (90)
Q Consensus        80 ----p~~D~i~l   87 (90)
                          ..+|.|++
T Consensus        84 ~~g~~~vDgIL~   95 (285)
T 1wg8_A           84 ALGVERVDGILA   95 (285)
T ss_dssp             HTTCSCEEEEEE
T ss_pred             HcCCCCcCEEEe
Confidence                23788886

>3axs_A Probable N(2),N(2)-dimethylguanosine tRNA methylt TRM1; structural genomics, riken structural genomics/proteomics in RSGI; HET: SFG; 2.16A {Aquifex aeolicus} PDB: 3axt_A*

Probab=98.41  E-value=6.2e-08  Score=67.39  Aligned_cols=66  Identities=14%  Similarity=0.006  Sum_probs=53.7

Q ss_pred             CCCeEEEecCCchHHHHHHHHHCCC-CeEEEeeh-HHHHHhCCCC-------CC-eeEEEecCCCC----CC-cccEEEe
Q 034578           23 NIRSMVDVGGGTGTVLAEIVKSYPH-IKGINFDL-QHVIATAPTH-------EG-VSHVGGDMFDA----IP-NADAVFM   87 (90)
Q Consensus        23 ~~~~vlDvG~G~G~~~~~l~~~~p~-~~~~~~D~-p~~~~~a~~~-------~r-v~~~~~d~~~~----~p-~~D~i~l   87 (90)
                      +..+|||++||+|.+++.++++.++ .+++++|+ |.+++.++++       ++ ++++.+|.++.    .+ .||+|++
T Consensus        52 ~g~~VLDlfaGtG~~sl~aa~~~~ga~~V~avDi~~~av~~~~~N~~~Ngl~~~~v~v~~~Da~~~l~~~~~~~fD~V~l  131 (392)
T 3axs_A           52 RPVKVADPLSASGIRAIRFLLETSCVEKAYANDISSKAIEIMKENFKLNNIPEDRYEIHGMEANFFLRKEWGFGFDYVDL  131 (392)
T ss_dssp             SCEEEEESSCTTSHHHHHHHHHCSCEEEEEEECSCHHHHHHHHHHHHHTTCCGGGEEEECSCHHHHHHSCCSSCEEEEEE
T ss_pred             CCCEEEECCCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHhCCCCceEEEEeCCHHHHHHHhhCCCCcEEEE
Confidence            3578999999999999999998765 57999999 9999888762       34 99999998652    23 3899987


Q ss_pred             e
Q 034578           88 K   88 (90)
Q Consensus        88 ~   88 (90)
                      .
T Consensus       132 D  132 (392)
T 3axs_A          132 D  132 (392)
T ss_dssp             C
T ss_pred             C
Confidence            3

>2xyq_A Putative 2'-O-methyl transferase; transferase-viral protein complex, rossman fold; HET: SAH; 2.00A {Sars coronavirus} PDB: 2xyv_A* 2xyr_A*

Probab=98.41  E-value=5.7e-07  Score=60.33  Aligned_cols=59  Identities=19%  Similarity=0.232  Sum_probs=45.3

Q ss_pred             CCCCCeEEEecC------CchHHHHHHHHHCC-CCeEEEeeh-HHHHHhCCCCCCeeE-EEecCCC-CCCc-ccEEEee
Q 034578           21 FNNIRSMVDVGG------GTGTVLAEIVKSYP-HIKGINFDL-QHVIATAPTHEGVSH-VGGDMFD-AIPN-ADAVFMK   88 (90)
Q Consensus        21 ~~~~~~vlDvG~------G~G~~~~~l~~~~p-~~~~~~~D~-p~~~~~a~~~~rv~~-~~~d~~~-~~p~-~D~i~l~   88 (90)
                      +.+..+|||+||      |+|.  ..+++..| ..+++++|+ |. +      +++++ +.+|+.+ +++. +|+|+..
T Consensus        61 l~~g~~VLDLGcGsg~~~GpGs--~~~a~~~~~~~~V~gvDis~~-v------~~v~~~i~gD~~~~~~~~~fD~Vvsn  130 (290)
T 2xyq_A           61 VPYNMRVIHFGAGSDKGVAPGT--AVLRQWLPTGTLLVDSDLNDF-V------SDADSTLIGDCATVHTANKWDLIISD  130 (290)
T ss_dssp             CCTTCEEEEESCCCTTSBCHHH--HHHHHHSCTTCEEEEEESSCC-B------CSSSEEEESCGGGCCCSSCEEEEEEC
T ss_pred             CCCCCEEEEeCCCCCCCCCcHH--HHHHHHcCCCCEEEEEECCCC-C------CCCEEEEECccccCCccCcccEEEEc
Confidence            456679999999      5587  44566666 689999999 66 2      47899 9999987 4444 9999863

>4gqb_A Protein arginine N-methyltransferase 5; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} PDB: 4g56_A*

Probab=98.39  E-value=3.6e-07  Score=66.97  Aligned_cols=64  Identities=19%  Similarity=0.306  Sum_probs=47.3

Q ss_pred             CCeEEEecCCchHHHHHHHHHC----CCCeEEEeehHHHHHhCCC-------CCCeeEEEecCCC-CCCc-ccEEEe
Q 034578           24 IRSMVDVGGGTGTVLAEIVKSY----PHIKGINFDLQHVIATAPT-------HEGVSHVGGDMFD-AIPN-ADAVFM   87 (90)
Q Consensus        24 ~~~vlDvG~G~G~~~~~l~~~~----p~~~~~~~D~p~~~~~a~~-------~~rv~~~~~d~~~-~~p~-~D~i~l   87 (90)
                      ...|+|||||+|-++...+++.    -++++.++|..++...+++       .++|+++.+|+.+ .+|+ +|+|+.
T Consensus       358 ~~vVldVGaGrGpLv~~al~A~a~~~~~vkVyAVEknp~A~~a~~~v~~N~~~dkVtVI~gd~eev~LPEKVDIIVS  434 (637)
T 4gqb_A          358 VQVLMVLGAGRGPLVNASLRAAKQADRRIKLYAVEKNPNAVVTLENWQFEEWGSQVTVVSSDMREWVAPEKADIIVS  434 (637)
T ss_dssp             EEEEEEESCTTSHHHHHHHHHHHHTTCEEEEEEEESCHHHHHHHHHHHHHTTGGGEEEEESCTTTCCCSSCEEEEEC
T ss_pred             CcEEEEECCCCcHHHHHHHHHHHhcCCCcEEEEEECCHHHHHHHHHHHhccCCCeEEEEeCcceeccCCcccCEEEE
Confidence            4579999999999844444432    3357899998334444443       4889999999998 7887 999985

>4auk_A Ribosomal RNA large subunit methyltransferase M; YGDE; HET: TLA PGE; 1.90A {Escherichia coli} PDB: 4atn_A* 4b17_A*

Probab=98.26  E-value=1.2e-06  Score=60.73  Aligned_cols=65  Identities=17%  Similarity=0.100  Sum_probs=50.8

Q ss_pred             CCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeehHHHHHhCCCCCCeeEEEecCCCC-CCc--ccEEEe
Q 034578           21 FNNIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDLQHVIATAPTHEGVSHVGGDMFDA-IPN--ADAVFM   87 (90)
Q Consensus        21 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~p~~~~~a~~~~rv~~~~~d~~~~-~p~--~D~i~l   87 (90)
                      +.+..++||+|+++|.++..++++  +.+++++|.-++-......++++++.+|.++. .+.  +|+++.
T Consensus       209 l~~G~~vlDLGAaPGGWT~~l~~r--g~~V~aVD~~~l~~~l~~~~~V~~~~~d~~~~~~~~~~~D~vvs  276 (375)
T 4auk_A          209 LANGMWAVDLGACPGGWTYQLVKR--NMWVYSVDNGPMAQSLMDTGQVTWLREDGFKFRPTRSNISWMVC  276 (375)
T ss_dssp             SCTTCEEEEETCTTCHHHHHHHHT--TCEEEEECSSCCCHHHHTTTCEEEECSCTTTCCCCSSCEEEEEE
T ss_pred             CCCCCEEEEeCcCCCHHHHHHHHC--CCEEEEEEhhhcChhhccCCCeEEEeCccccccCCCCCcCEEEE
Confidence            456789999999999999999987  68999999633323334468999999999983 332  899875

>2ar0_A M.ecoki, type I restriction enzyme ecoki M protein; structural genomics, protein structure initiative, nysgxrc; 2.80A {Escherichia coli} SCOP: c.66.1.45 PDB: 2y7c_B 2y7h_B*

Probab=98.22  E-value=1.6e-06  Score=62.35  Aligned_cols=78  Identities=22%  Similarity=0.192  Sum_probs=56.7

Q ss_pred             hHHHHHhhcccCCCCCCCeEEEecCCchHHHHHHHHHCC------------------CCeEEEeeh-HHHHHhCCC----
Q 034578            8 TMKAFVSHYKVDGFNNIRSMVDVGGGTGTVLAEIVKSYP------------------HIKGINFDL-QHVIATAPT----   64 (90)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p------------------~~~~~~~D~-p~~~~~a~~----   64 (90)
                      +++.+++.+.   .....+|+|.+||+|.++..+.+...                  ..+++++|+ |.+++.|+.    
T Consensus       157 iv~~mv~~l~---p~~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~~~~i~GiEid~~~~~lA~~nl~l  233 (541)
T 2ar0_A          157 LIKTIIHLLK---PQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLL  233 (541)
T ss_dssp             HHHHHHHHHC---CCTTCCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESCHHHHHHHHHHHHT
T ss_pred             HHHHHHHHhc---cCCCCeEecCCcccchHHHHHHHHHHHhhcccccCCHHHHhhhhcceEEEEcCCHHHHHHHHHHHHH
Confidence            3444555554   34457899999999999998887532                  247999999 998888764    


Q ss_pred             --CCC-----eeEEEecCCC-C---CCcccEEEee
Q 034578           65 --HEG-----VSHVGGDMFD-A---IPNADAVFMK   88 (90)
Q Consensus        65 --~~r-----v~~~~~d~~~-~---~p~~D~i~l~   88 (90)
                        .+.     ..+..+|.+. +   ...+|+|+.+
T Consensus       234 ~gi~~~~~~~~~I~~gDtL~~~~~~~~~fD~Vv~N  268 (541)
T 2ar0_A          234 HDIEGNLDHGGAIRLGNTLGSDGENLPKAHIVATN  268 (541)
T ss_dssp             TTCCCBGGGTBSEEESCTTSHHHHTSCCEEEEEEC
T ss_pred             hCCCccccccCCeEeCCCcccccccccCCeEEEEC
Confidence              122     7889999987 2   2349999875

>3tka_A Ribosomal RNA small subunit methyltransferase H; HET: SAM CTN PG4; 2.25A {Escherichia coli}

Probab=98.18  E-value=6.5e-06  Score=56.45  Aligned_cols=78  Identities=17%  Similarity=0.158  Sum_probs=62.6

Q ss_pred             hHHHHHhhcccCCCCCCCeEEEecCCchHHHHHHHHHC-CCCeEEEeeh-HHHHHhCCC--CCCeeEEEecCCC-C----
Q 034578            8 TMKAFVSHYKVDGFNNIRSMVDVGGGTGTVLAEIVKSY-PHIKGINFDL-QHVIATAPT--HEGVSHVGGDMFD-A----   78 (90)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~-p~~~~~~~D~-p~~~~~a~~--~~rv~~~~~d~~~-~----   78 (90)
                      +.+.+++.+.   ..+...++|..+|.|..+..++++. |+.+++++|. |.+++.++.  .+|++++.++|.+ .    
T Consensus        45 Ll~Evl~~L~---i~pggiyVD~TlG~GGHS~~iL~~lg~~GrVig~D~Dp~Al~~A~rL~~~Rv~lv~~nF~~l~~~L~  121 (347)
T 3tka_A           45 LLDEAVNGLN---IRPDGIYIDGTFGRGGHSRLILSQLGEEGRLLAIDRDPQAIAVAKTIDDPRFSIIHGPFSALGEYVA  121 (347)
T ss_dssp             TTHHHHHHTC---CCTTCEEEESCCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHTTCCCTTEEEEESCGGGHHHHHH
T ss_pred             cHHHHHHhhC---CCCCCEEEEeCcCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHhhcCCcEEEEeCCHHHHHHHHH
Confidence            3466677776   5567899999999999999999985 8899999999 999998854  4789999999876 1    


Q ss_pred             ---CC-cccEEEee
Q 034578           79 ---IP-NADAVFMK   88 (90)
Q Consensus        79 ---~p-~~D~i~l~   88 (90)
                         ++ .+|.|++.
T Consensus       122 ~~g~~~~vDgILfD  135 (347)
T 3tka_A          122 ERDLIGKIDGILLD  135 (347)
T ss_dssp             HTTCTTCEEEEEEE
T ss_pred             hcCCCCcccEEEEC
Confidence               22 37888763

>3khk_A Type I restriction-modification system methylation subunit; structural genomics, PSI-2, protein structure initiative; 2.55A {Methanosarcina mazei}

Probab=98.15  E-value=9.2e-07  Score=63.70  Aligned_cols=77  Identities=17%  Similarity=0.104  Sum_probs=54.8

Q ss_pred             hHHHHHhhcccCCCCCCCeEEEecCCchHHHHHHHHHCC---------------CCeEEEeeh-HHHHHhCCC-------
Q 034578            8 TMKAFVSHYKVDGFNNIRSMVDVGGGTGTVLAEIVKSYP---------------HIKGINFDL-QHVIATAPT-------   64 (90)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p---------------~~~~~~~D~-p~~~~~a~~-------   64 (90)
                      +++.+++.+.   .. ..+|+|.+||||.++..+.+..+               ..++.++|+ |.+++.|+.       
T Consensus       233 Vv~lmv~ll~---p~-~~~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~i~G~Eid~~~~~lA~~Nl~l~gi  308 (544)
T 3khk_A          233 IVTLIVEMLE---PY-KGRVYDPAMGSGGFFVSSDKFIEKHANVKHYNASEQKKQISVYGQESNPTTWKLAAMNMVIRGI  308 (544)
T ss_dssp             HHHHHHHHHC---CC-SEEEEESSCTTCHHHHHHHHHHHHHHHHHTSCHHHHGGGEEEEECCCCHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHh---cC-CCeEeCcccCcCcHHHHHHHHHHHhccccccchHHHhhhceEEEEeCCHHHHHHHHHHHHHhCC
Confidence            4455555554   22 34999999999999998865432               568999999 998888764       


Q ss_pred             CCCeeEEEecCCC-C-CC--cccEEEee
Q 034578           65 HEGVSHVGGDMFD-A-IP--NADAVFMK   88 (90)
Q Consensus        65 ~~rv~~~~~d~~~-~-~p--~~D~i~l~   88 (90)
                      ..++.+..+|.+. + .+  .+|+|+.+
T Consensus       309 ~~~i~i~~gDtL~~~~~~~~~fD~Iv~N  336 (544)
T 3khk_A          309 DFNFGKKNADSFLDDQHPDLRADFVMTN  336 (544)
T ss_dssp             CCBCCSSSCCTTTSCSCTTCCEEEEEEC
T ss_pred             CcccceeccchhcCcccccccccEEEEC
Confidence            2345557899887 3 22  39999875

>3lkd_A Type I restriction-modification system methyltransferase subunit; Q5M500_STRT2, STU0711, NESG, SUR80, structural genomics, PSI-2; 2.25A {Streptococcus thermophilus}

Probab=98.14  E-value=2.6e-06  Score=61.40  Aligned_cols=66  Identities=21%  Similarity=0.239  Sum_probs=53.3

Q ss_pred             CCCeEEEecCCchHHHHHHHHHC---CCCeEEEeeh-HHHHHhCCCC--------CCeeEEEecCCCC-CC-----cccE
Q 034578           23 NIRSMVDVGGGTGTVLAEIVKSY---PHIKGINFDL-QHVIATAPTH--------EGVSHVGGDMFDA-IP-----NADA   84 (90)
Q Consensus        23 ~~~~vlDvG~G~G~~~~~l~~~~---p~~~~~~~D~-p~~~~~a~~~--------~rv~~~~~d~~~~-~p-----~~D~   84 (90)
                      ...+|+|-+||||.++..+.+..   +..++.++|+ |.++..|+.+        ++..+..+|.+.. +|     .+|+
T Consensus       221 ~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~i~G~Eid~~~~~lA~~Nl~l~gi~~~~~~I~~gDtL~~d~p~~~~~~fD~  300 (542)
T 3lkd_A          221 QGFTLYDATMGSGSLLLNAKRYSRQPQTVVYFGQELNTSTYNLARMNMILHGVPIENQFLHNADTLDEDWPTQEPTNFDG  300 (542)
T ss_dssp             TTCEEEETTCTTSTTGGGHHHHCSCTTTCEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEESCTTTSCSCCSSCCCBSE
T ss_pred             CCCEEeecccchhHHHHHHHHHHHhccCceEEEEECcHHHHHHHHHHHHHcCCCcCccceEecceecccccccccccccE
Confidence            45699999999999999999885   3678999999 9988887641        4678999999873 22     2999


Q ss_pred             EEee
Q 034578           85 VFMK   88 (90)
Q Consensus        85 i~l~   88 (90)
                      |+.+
T Consensus       301 IvaN  304 (542)
T 3lkd_A          301 VLMN  304 (542)
T ss_dssp             EEEC
T ss_pred             EEec
Confidence            9875

>3ua3_A Protein arginine N-methyltransferase 5; TIM-barrel, rossmann fold, beta-barrel, symmetric arginine dimethylase, SAM binding; HET: SAH; 3.00A {Caenorhabditis elegans} PDB: 3ua4_A

Probab=98.12  E-value=2.2e-06  Score=63.56  Aligned_cols=64  Identities=22%  Similarity=0.225  Sum_probs=46.5

Q ss_pred             CCeEEEecCCchHHHHHHHHHC-------------CCCeEEEeeh-HHHHHhCCC------CCCeeEEEecCCC-CC---
Q 034578           24 IRSMVDVGGGTGTVLAEIVKSY-------------PHIKGINFDL-QHVIATAPT------HEGVSHVGGDMFD-AI---   79 (90)
Q Consensus        24 ~~~vlDvG~G~G~~~~~l~~~~-------------p~~~~~~~D~-p~~~~~a~~------~~rv~~~~~d~~~-~~---   79 (90)
                      ...|+|||||+|-++...+++.             ...+++++|. |.++...+.      .++|+++.+|+.+ .+   
T Consensus       410 ~~VVldVGaGtGpLs~~al~A~~~a~~~~~~~~~~~~~kVyAVEknp~A~~~l~~~~~Ng~~d~VtVI~gd~eev~lp~~  489 (745)
T 3ua3_A          410 TVVIYLLGGGRGPIGTKILKSEREYNNTFRQGQESLKVKLYIVEKNPNAIVTLKYMNVRTWKRRVTIIESDMRSLPGIAK  489 (745)
T ss_dssp             EEEEEEESCTTCHHHHHHHHHHHHHHHHHSTTSCCCEEEEEEEECCHHHHHHHHHHHHHTTTTCSEEEESCGGGHHHHHH
T ss_pred             CcEEEEECCCCCHHHHHHHHHHHHhCccccccccccccEEEEEeCChHHHHHHHHHHhcCCCCeEEEEeCchhhcccccc
Confidence            4689999999999975433221             2458999998 765533222      4789999999988 55   


Q ss_pred             ---Cc-ccEEEe
Q 034578           80 ---PN-ADAVFM   87 (90)
Q Consensus        80 ---p~-~D~i~l   87 (90)
                         |+ +|+|+.
T Consensus       490 ~~~~ekVDIIVS  501 (745)
T 3ua3_A          490 DRGFEQPDIIVS  501 (745)
T ss_dssp             HTTCCCCSEEEE
T ss_pred             cCCCCcccEEEE
Confidence               44 999985

>3p8z_A Mtase, non-structural protein 5; methyltransferase, RNA, ER, transferase-transferase inhibito; HET: 36A SAH; 1.70A {Dengue virus 3} SCOP: c.66.1.25 PDB: 3p97_A* 2xbm_A* 3evg_A*

Probab=98.09  E-value=7.2e-06  Score=53.97  Aligned_cols=77  Identities=14%  Similarity=0.108  Sum_probs=54.6

Q ss_pred             hHHHHHhhcccCCCCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeeh-HHHHHhCC--C---CCCeeEEEe-cCCC-CC
Q 034578            8 TMKAFVSHYKVDGFNNIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDL-QHVIATAP--T---HEGVSHVGG-DMFD-AI   79 (90)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~--~---~~rv~~~~~-d~~~-~~   79 (90)
                      .-..+.+.+.   +.+..+|+|+||++|.++...+......++.++|+ +.-.+.-+  +   -+.++|..+ |++. +.
T Consensus        66 KL~ei~ek~~---l~~g~~VvDLGaapGGWSq~~a~~~g~~~V~avdvG~~ghe~P~~~~s~gwn~v~fk~gvDv~~~~~  142 (267)
T 3p8z_A           66 KLQWFVERNM---VIPEGRVIDLGCGRGGWSYYCAGLKKVTEVRGYTKGGPGHEEPVPMSTYGWNIVKLMSGKDVFYLPP  142 (267)
T ss_dssp             HHHHHHHTTS---SCCCEEEEEESCTTSHHHHHHHTSTTEEEEEEECCCSTTSCCCCCCCCTTTTSEEEECSCCGGGCCC
T ss_pred             HHHHHHHhcC---CCCCCEEEEcCCCCCcHHHHHHHhcCCCEEEEEecCCCCccCcchhhhcCcCceEEEeccceeecCC
Confidence            3445555554   66677999999999999998888877668999997 33222111  1   267999999 9765 22


Q ss_pred             CcccEEEe
Q 034578           80 PNADAVFM   87 (90)
Q Consensus        80 p~~D~i~l   87 (90)
                      ..+|++++
T Consensus       143 ~~~Dtllc  150 (267)
T 3p8z_A          143 EKCDTLLC  150 (267)
T ss_dssp             CCCSEEEE
T ss_pred             ccccEEEE
Confidence            23899876

>3s1s_A Restriction endonuclease bpusi; PD--(D/E)XK catalytic motif, gamma-N6M-adenosine methyltrans S-adenosyl-methionine binding, hydrolase; HET: SAH; 2.35A {Bacillus pumilus}

Probab=98.07  E-value=5.3e-06  Score=62.45  Aligned_cols=67  Identities=16%  Similarity=0.247  Sum_probs=49.1

Q ss_pred             CCCCeEEEecCCchHHHHHHHHHCC---CCeEEEeeh-HHHHHhC--CC----------CCCeeEEEecCCCC----CCc
Q 034578           22 NNIRSMVDVGGGTGTVLAEIVKSYP---HIKGINFDL-QHVIATA--PT----------HEGVSHVGGDMFDA----IPN   81 (90)
Q Consensus        22 ~~~~~vlDvG~G~G~~~~~l~~~~p---~~~~~~~D~-p~~~~~a--~~----------~~rv~~~~~d~~~~----~p~   81 (90)
                      ....+|+|.|||+|.++.+++++.+   ..+++++|+ |.+++.|  +.          .....+...|++++    ...
T Consensus       320 ~~g~rVLDPaCGSG~FLIaaA~~l~ei~~~~IyGvEIDp~Al~LAK~RlNL~lN~LlhGi~~~~I~~dD~L~~~~~~~~k  399 (878)
T 3s1s_A          320 TEDEVISDPAAGSGNLLATVSAGFNNVMPRQIWANDIETLFLELLSIRLGLLFPQLVSSNNAPTITGEDVCSLNPEDFAN  399 (878)
T ss_dssp             CTTCEEEETTCTTSHHHHHHHHTSTTCCGGGEEEECSCGGGHHHHHHHHHTTSTTTCBTTBCCEEECCCGGGCCGGGGTT
T ss_pred             CCCCEEEECCCCccHHHHHHHHHhcccCCCeEEEEECCHHHHHHHHHHHHHHHhhhhcCCCcceEEecchhcccccccCC
Confidence            3467999999999999999999876   467999999 8888776  21          12235556667652    223


Q ss_pred             ccEEEee
Q 034578           82 ADAVFMK   88 (90)
Q Consensus        82 ~D~i~l~   88 (90)
                      +|+|+.+
T Consensus       400 FDVVIgN  406 (878)
T 3s1s_A          400 VSVVVMN  406 (878)
T ss_dssp             EEEEEEC
T ss_pred             CCEEEEC
Confidence            9999874

>3c6k_A Spermine synthase; spermidine aminopropyltransferase, SPMSY, structural genomics, structural genomics consortium, SGC, phosphoprotein; HET: SPD MTA; 1.95A {Homo sapiens} PDB: 3c6m_A*

Probab=97.93  E-value=6.3e-06  Score=57.21  Aligned_cols=64  Identities=23%  Similarity=0.260  Sum_probs=52.1

Q ss_pred             CCCeEEEecCCchHHHHHHHHHCCCCeEEEeeh-HHHHHhCCC--------------CCCeeEEEecCCCCC-------C
Q 034578           23 NIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDL-QHVIATAPT--------------HEGVSHVGGDMFDAI-------P   80 (90)
Q Consensus        23 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~--------------~~rv~~~~~d~~~~~-------p   80 (90)
                      ++++||=||+|.|..+.++++. |..+++.+|+ |.+++.+++              .+|++++.+|.++.+       .
T Consensus       205 ~pkrVLIIGgGdG~~~revlkh-~~~~V~~VEIDp~VVe~ar~yfp~~~~~~~d~pr~~rv~vii~Da~~fl~~~~~~~~  283 (381)
T 3c6k_A          205 TGKDVLILGGGDGGILCEIVKL-KPKMVTMVEIDQMVIDGCKKYMRKTCGDVLDNLKGDCYQVLIEDCIPVLKRYAKEGR  283 (381)
T ss_dssp             TTCEEEEEECTTCHHHHHHHTT-CCSEEEEEESCHHHHHHHHHHCCC----CCSSSEETTEEEEESCHHHHHHHHHHHTC
T ss_pred             CCCeEEEECCCcHHHHHHHHhc-CCceeEEEccCHHHHHHHHhhchhhhhhhhccccccceeeehHHHHHHHHhhhhccC
Confidence            4689999999999999999985 5588999999 999988764              156899999987522       2


Q ss_pred             cccEEEe
Q 034578           81 NADAVFM   87 (90)
Q Consensus        81 ~~D~i~l   87 (90)
                      .||+|++
T Consensus       284 ~yDvIIv  290 (381)
T 3c6k_A          284 EFDYVIN  290 (381)
T ss_dssp             CEEEEEE
T ss_pred             ceeEEEE
Confidence            3899986

>1i4w_A Mitochondrial replication protein MTF1; mitochondrial transcription factor, transcription initiation; 2.60A {Saccharomyces cerevisiae} SCOP: c.66.1.24

Probab=97.91  E-value=1.5e-05  Score=54.79  Aligned_cols=69  Identities=10%  Similarity=0.078  Sum_probs=51.7

Q ss_pred             hhhHHHHHhhcccCCCC------CCCeEEEecCCchHHHHHHHHHCCCCeEEEeeh-HHHHHhCC---CCCCeeEEEecC
Q 034578            6 KITMKAFVSHYKVDGFN------NIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDL-QHVIATAP---THEGVSHVGGDM   75 (90)
Q Consensus         6 ~~~~~~~~~~~~~~~~~------~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~---~~~rv~~~~~d~   75 (90)
                      ..+++.|++...   ..      +...||+||.|.|.++..|+++....+++++|+ +..++.-+   ..++++++.+|+
T Consensus        38 ~~i~~~Iv~~~~---l~~~~~~~~~~~VlEIGPG~G~LT~~Ll~~~~~~~vvavE~D~~l~~~L~~~~~~~~l~ii~~D~  114 (353)
T 1i4w_A           38 PTVYNKIFDKLD---LTKTYKHPEELKVLDLYPGVGIQSAIFYNKYCPRQYSLLEKRSSLYKFLNAKFEGSPLQILKRDP  114 (353)
T ss_dssp             HHHHHHHHHHHC---GGGTCCCTTTCEEEEESCTTCHHHHHHHHHHCCSEEEEECCCHHHHHHHHHHTTTSSCEEECSCT
T ss_pred             HHHHHHHHHhcc---CCcccCcCCCCEEEEECCCCCHHHHHHHhhCCCCEEEEEecCHHHHHHHHHhccCCCEEEEECCc
Confidence            345677777665   32      247899999999999999999754567888887 65544332   357899999999


Q ss_pred             CC
Q 034578           76 FD   77 (90)
Q Consensus        76 ~~   77 (90)
                      ++
T Consensus       115 l~  116 (353)
T 1i4w_A          115 YD  116 (353)
T ss_dssp             TC
T ss_pred             cc
Confidence            76

>2zig_A TTHA0409, putative modification methylase; methyltransferase, S- adenosylmethionine, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} PDB: 2zie_A* 2zif_A

Probab=97.90  E-value=1.4e-05  Score=53.22  Aligned_cols=52  Identities=17%  Similarity=0.154  Sum_probs=41.6

Q ss_pred             hhHHHHHhhcccCCCCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeeh-HHHHHhCCC
Q 034578            7 ITMKAFVSHYKVDGFNNIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDL-QHVIATAPT   64 (90)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~   64 (90)
                      .+.+.+++.+.    .+...|||.+||+|.++.++++.  +.+++++|+ |.+++.|++
T Consensus       223 ~l~~~~i~~~~----~~~~~vlD~f~GsGt~~~~a~~~--g~~~~g~e~~~~~~~~a~~  275 (297)
T 2zig_A          223 ELAERLVRMFS----FVGDVVLDPFAGTGTTLIAAARW--GRRALGVELVPRYAQLAKE  275 (297)
T ss_dssp             HHHHHHHHHHC----CTTCEEEETTCTTTHHHHHHHHT--TCEEEEEESCHHHHHHHHH
T ss_pred             HHHHHHHHHhC----CCCCEEEECCCCCCHHHHHHHHc--CCeEEEEeCCHHHHHHHHH
Confidence            45566666554    24579999999999999998886  468999999 999888765

>3gcz_A Polyprotein; flavivirus, RNA capping, methyltransferase, viral enzyme STR ATP-binding, nucleotide-binding, RNA replication, structura genomics; HET: SAM; 1.70A {Yokose virus}

Probab=97.90  E-value=2.4e-05  Score=52.29  Aligned_cols=44  Identities=18%  Similarity=0.113  Sum_probs=35.1

Q ss_pred             HHHHHhhcccCCCCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeeh
Q 034578            9 MKAFVSHYKVDGFNNIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDL   55 (90)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~   55 (90)
                      -..+.+.+.   +.+..+|||+|||+|.++..++++.+...++++|+
T Consensus        79 L~ei~eK~~---Lk~~~~VLDLGaAPGGWsQvAa~~~gv~sV~Gvdv  122 (282)
T 3gcz_A           79 LRWMEERGY---VKPTGIVVDLGCGRGGWSYYAASLKNVKKVMAFTL  122 (282)
T ss_dssp             HHHHHHTTS---CCCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECC
T ss_pred             HHHHHHhcC---CCCCCEEEEeCCCCCHHHHHHHHhcCCCeeeeEEe
Confidence            344455553   66677999999999999999998887777889997

>3evf_A RNA-directed RNA polymerase NS5; NS5 methyltransferase, RNA CAP binding, binding, capsid protein; HET: GTA SAH; 1.45A {Yellow fever virus} SCOP: c.66.1.0 PDB: 3evb_A* 3evc_A* 3evd_A* 3eve_A* 3eva_A*

Probab=97.84  E-value=5.2e-05  Score=50.58  Aligned_cols=67  Identities=10%  Similarity=0.013  Sum_probs=42.6

Q ss_pred             CCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeeh-HHHHHhCCCC----CCeeEEEecCCC-CCC--cccEEEe
Q 034578           21 FNNIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDL-QHVIATAPTH----EGVSHVGGDMFD-AIP--NADAVFM   87 (90)
Q Consensus        21 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~----~rv~~~~~d~~~-~~p--~~D~i~l   87 (90)
                      +.+..+|||+|||+|.++..++++.+..++.++|+ -.........    .++..+..++.. .++  .+|+|+.
T Consensus        72 l~~~~~VLDLGaAPGGWSQvAa~~~~~~~v~g~dVGvDl~~~pi~~~~~g~~ii~~~~~~dv~~l~~~~~DlVls  146 (277)
T 3evf_A           72 VKLEGRVIDLGCGRGGWCYYAAAQKEVSGVKGFTLGRDGHEKPMNVQSLGWNIITFKDKTDIHRLEPVKCDTLLC  146 (277)
T ss_dssp             SCCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTTCCCCCCCCBTTGGGEEEECSCCTTTSCCCCCSEEEE
T ss_pred             CCCCCEEEEecCCCCHHHHHHHHhcCCCcceeEEEeccCcccccccCcCCCCeEEEeccceehhcCCCCccEEEe
Confidence            56667999999999999999988776666777776 3321111111    144445555422 343  2899875

>2ld4_A Anamorsin; methyltransferase-like fold, alpha/beta fold, iron-sulfur PR biogenesis, apoptosis; NMR {Homo sapiens} PDB: 2yui_A

Probab=97.75  E-value=9.4e-06  Score=49.57  Aligned_cols=53  Identities=4%  Similarity=-0.057  Sum_probs=41.5

Q ss_pred             CCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeeh-HHHHHhCCCC--CCeeEEEecCCC-CC---Cc--ccEEEeec
Q 034578           21 FNNIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDL-QHVIATAPTH--EGVSHVGGDMFD-AI---PN--ADAVFMKV   89 (90)
Q Consensus        21 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~--~rv~~~~~d~~~-~~---p~--~D~i~l~~   89 (90)
                      ..+..+|||||||.                +.+|+ +.|++.++++  .++++..+|+.+ +.   +.  ||+|++++
T Consensus        10 ~~~g~~vL~~~~g~----------------v~vD~s~~ml~~a~~~~~~~~~~~~~d~~~~~~~~~~~~~fD~V~~~~   71 (176)
T 2ld4_A           10 ISAGQFVAVVWDKS----------------SPVEALKGLVDKLQALTGNEGRVSVENIKQLLQSAHKESSFDIILSGL   71 (176)
T ss_dssp             CCTTSEEEEEECTT----------------SCHHHHHHHHHHHHHHTTTTSEEEEEEGGGGGGGCCCSSCEEEEEECC
T ss_pred             CCCCCEEEEecCCc----------------eeeeCCHHHHHHHHHhcccCcEEEEechhcCccccCCCCCEeEEEECC
Confidence            55678999999996                23898 9999988763  469999999976 43   43  99999864

>3lkz_A Non-structural protein 5; flavivirus, methyltransferase, inhibitor, P nucleotide-binding, RNA replication, viral protein; HET: SFG; 2.00A {West nile virus}

Probab=97.73  E-value=7.5e-05  Score=50.49  Aligned_cols=76  Identities=13%  Similarity=0.153  Sum_probs=51.4

Q ss_pred             HHHHHhhcccCCCCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeeh-HHHHHh---CCC--CCCeeEEEe-cCCC-CCC
Q 034578            9 MKAFVSHYKVDGFNNIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDL-QHVIAT---APT--HEGVSHVGG-DMFD-AIP   80 (90)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~---a~~--~~rv~~~~~-d~~~-~~p   80 (90)
                      -..+.+.+.   +.....|||+||++|.++..++......++.++|+ ..-.+.   .++  -.-+.+..+ |++. +..
T Consensus        83 L~ei~~~~~---l~~~~~VlDLGaapGGwsq~~~~~~gv~~V~avdvG~~~he~P~~~~ql~w~lV~~~~~~Dv~~l~~~  159 (321)
T 3lkz_A           83 LRWLVERRF---LEPVGKVIDLGCGRGGWCYYMATQKRVQEVRGYTKGGPGHEEPQLVQSYGWNIVTMKSGVDVFYRPSE  159 (321)
T ss_dssp             HHHHHHTTS---CCCCEEEEEETCTTCHHHHHHTTCTTEEEEEEECCCSTTSCCCCCCCBTTGGGEEEECSCCTTSSCCC
T ss_pred             HHHHHHhcC---CCCCCEEEEeCCCCCcHHHHHHhhcCCCEEEEEEcCCCCccCcchhhhcCCcceEEEeccCHhhCCCC
Confidence            345555544   56667999999999999998888776667999997 331110   011  134888888 8765 222


Q ss_pred             cccEEEe
Q 034578           81 NADAVFM   87 (90)
Q Consensus        81 ~~D~i~l   87 (90)
                      .+|++++
T Consensus       160 ~~D~ivc  166 (321)
T 3lkz_A          160 CCDTLLC  166 (321)
T ss_dssp             CCSEEEE
T ss_pred             CCCEEEE
Confidence            3888875

>2px2_A Genome polyprotein [contains: capsid protein C (core protein); envelope protein M...; methyltransferase, SAH; HET: SAH; 2.00A {Murray valley encephalitis virus} PDB: 2px4_A* 2px5_A* 2pxa_A* 2pxc_A* 2px8_A* 2oy0_A*

Probab=97.53  E-value=0.00012  Score=48.60  Aligned_cols=75  Identities=17%  Similarity=0.074  Sum_probs=44.5

Q ss_pred             HHHHHhhcccCCCCCCCeEEEecCCchHHHHHHHHHCCC----CeEEEeehHHHHHhCCCCCCe---eEEEe-cCCCCCC
Q 034578            9 MKAFVSHYKVDGFNNIRSMVDVGGGTGTVLAEIVKSYPH----IKGINFDLQHVIATAPTHEGV---SHVGG-DMFDAIP   80 (90)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~----~~~~~~D~p~~~~~a~~~~rv---~~~~~-d~~~~~p   80 (90)
                      -.+|-+.+-   +.+..+|||+||++|..+...++.-+-    ..++++|+ +..........+   .|..+ ||++.-+
T Consensus        62 L~EIdeK~l---ikpg~~VVDLGaAPGGWSQvAa~~~~vg~V~G~vig~D~-~~~P~~~~~~Gv~~i~~~~G~Df~~~~~  137 (269)
T 2px2_A           62 LRWLVERRF---VQPIGKVVDLGCGRGGWSYYAATMKNVQEVRGYTKGGPG-HEEPMLMQSYGWNIVTMKSGVDVFYKPS  137 (269)
T ss_dssp             HHHHHHTTS---CCCCEEEEEETCTTSHHHHHHTTSTTEEEEEEECCCSTT-SCCCCCCCSTTGGGEEEECSCCGGGSCC
T ss_pred             HHHHHHcCC---CCCCCEEEEcCCCCCHHHHHHhhhcCCCCceeEEEcccc-ccCCCcccCCCceEEEeeccCCccCCCC
Confidence            344444432   677889999999999999999986222    12344442 111111111344   55557 9987323


Q ss_pred             -cccEEEe
Q 034578           81 -NADAVFM   87 (90)
Q Consensus        81 -~~D~i~l   87 (90)
                       .+|+|+.
T Consensus       138 ~~~DvVLS  145 (269)
T 2px2_A          138 EISDTLLC  145 (269)
T ss_dssp             CCCSEEEE
T ss_pred             CCCCEEEe
Confidence             3899875

>2qy6_A UPF0209 protein YFCK; structural genomics, unknown function, PSI-2, protein struct initiative; 2.00A {Escherichia coli}

Probab=97.45  E-value=7.5e-05  Score=49.12  Aligned_cols=34  Identities=21%  Similarity=0.347  Sum_probs=27.6

Q ss_pred             CCCeEEEecCCchHHHHHHHHH-------CCC-----CeEEEeeh-H
Q 034578           23 NIRSMVDVGGGTGTVLAEIVKS-------YPH-----IKGINFDL-Q   56 (90)
Q Consensus        23 ~~~~vlDvG~G~G~~~~~l~~~-------~p~-----~~~~~~D~-p   56 (90)
                      +..+|||+|+|+|..+..+++.       .|+     ++++.+|. |
T Consensus        60 ~~~~ILEiGfGtG~n~l~~~~~~~~~~~~~p~~~~~~l~~isiE~~p  106 (257)
T 2qy6_A           60 PLFVVAESGFGTGLNFLTLWQAFDQFREAHPQAQLQRLHFISFEKFP  106 (257)
T ss_dssp             SEEEEEESCCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSC
T ss_pred             CCCEEEEECCChHHHHHHHHHHHHhhhhhCCCCCcceeEEEEEECCc
Confidence            3478999999999988887665       674     68999997 6

>3b5i_A S-adenosyl-L-methionine:salicylic acid carboxyl methyltransferase-like protein; sabath family, indole-3-acetic acid, S-AD methionine; HET: SAH; 2.75A {Arabidopsis thaliana}

Probab=97.38  E-value=0.002  Score=44.53  Aligned_cols=66  Identities=21%  Similarity=0.317  Sum_probs=44.4

Q ss_pred             CCeEEEecCCchHHHHHH--------HHHC-------CCCeEEEeehHH-H-------HHhCCC-----------CCC--
Q 034578           24 IRSMVDVGGGTGTVLAEI--------VKSY-------PHIKGINFDLQH-V-------IATAPT-----------HEG--   67 (90)
Q Consensus        24 ~~~vlDvG~G~G~~~~~l--------~~~~-------p~~~~~~~D~p~-~-------~~~a~~-----------~~r--   67 (90)
                      .-+|+|+|||+|..+..+        .+++       |..++..-|+|. .       +...++           ..+  
T Consensus        53 ~~~IaDlGCssG~Nt~~~v~~ii~~i~~~~~~~~~~~pe~~v~~nDLp~NDFn~lF~~L~~~~~~~~~~~~~~~~~~~~~  132 (374)
T 3b5i_A           53 PFTAVDLGCSSGANTVHIIDFIVKHISKRFDAAGIDPPEFTAFFSDLPSNDFNTLFQLLPPLVSNTCMEECLAADGNRSY  132 (374)
T ss_dssp             CEEEEEETCCSSHHHHHHHHHHHHHHHHHHHHTTCCCCCEEEEEEECTTSCHHHHHHHSCCBCCCC--CCC---CCCBCS
T ss_pred             ceEEEecCCCCChhHHHHHHHHHHHHHHHHhhcCCCCCceeEEecCCCccchHHHHhhhhhhhhhcchhhhccccCCCce
Confidence            478999999999987776        3343       889999999854 1       222211           011  


Q ss_pred             -eeEEEecCCC-CCCc--ccEEEeec
Q 034578           68 -VSHVGGDMFD-AIPN--ADAVFMKV   89 (90)
Q Consensus        68 -v~~~~~d~~~-~~p~--~D~i~l~~   89 (90)
                       +.-++++|+. .+|.  +|+++.+.
T Consensus       133 f~~gvpgSFy~rlfP~~S~d~v~Ss~  158 (374)
T 3b5i_A          133 FVAGVPGSFYRRLFPARTIDFFHSAF  158 (374)
T ss_dssp             EEEEEESCTTSCCSCTTCEEEEEEES
T ss_pred             EEEecChhhhcccCCCcceEEEEecc
Confidence             4556778887 4564  89988764

>3cvo_A Methyltransferase-like protein of unknown functio; rossman fold, structural genomics, joint center for structur genomics, JCSG; HET: MSE PG4; 1.80A {Silicibacter pomeroyi dss-3}

Probab=97.29  E-value=0.00077  Score=42.99  Aligned_cols=51  Identities=12%  Similarity=0.082  Sum_probs=37.3

Q ss_pred             CCCeEEEecCCchHHHHHHHHHCCCCeEEEeeh-HHHHHhCCC---------CCCeeEEEecCC
Q 034578           23 NIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDL-QHVIATAPT---------HEGVSHVGGDMF   76 (90)
Q Consensus        23 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~---------~~rv~~~~~d~~   76 (90)
                      +..+||++|||  .-++.+++ .++.+++.+|. ++..+.+++         .++++++.+|..
T Consensus        30 ~a~~VLEiGtG--ySTl~lA~-~~~g~VvtvE~d~~~~~~ar~~l~~~g~~~~~~I~~~~gda~   90 (202)
T 3cvo_A           30 EAEVILEYGSG--GSTVVAAE-LPGKHVTSVESDRAWARMMKAWLAANPPAEGTEVNIVWTDIG   90 (202)
T ss_dssp             HCSEEEEESCS--HHHHHHHT-STTCEEEEEESCHHHHHHHHHHHHHSCCCTTCEEEEEECCCS
T ss_pred             CCCEEEEECch--HHHHHHHH-cCCCEEEEEeCCHHHHHHHHHHHHHcCCCCCCceEEEEeCch
Confidence            56899999985  44444444 46789999998 777666653         347999999954

>3ufb_A Type I restriction-modification system methyltran subunit; methyltransferase activity, transferase; 1.80A {Vibrio vulnificus}

Probab=97.10  E-value=0.0007  Score=48.61  Aligned_cols=78  Identities=13%  Similarity=0.057  Sum_probs=53.5

Q ss_pred             hHHHHHhhcccCCCCCCCeEEEecCCchHHHHHHHHHC-------------CCCeEEEeeh-HHHHHhCCC------CCC
Q 034578            8 TMKAFVSHYKVDGFNNIRSMVDVGGGTGTVLAEIVKSY-------------PHIKGINFDL-QHVIATAPT------HEG   67 (90)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~-------------p~~~~~~~D~-p~~~~~a~~------~~r   67 (90)
                      +++.+++.+.   .....+|+|-.||||.++....+..             ...+..++|+ |.+...|+-      .+.
T Consensus       205 Vv~lmv~l~~---p~~~~~I~DPacGsGgfL~~a~~~l~~~~~~~~~~~~~~~~~i~G~E~~~~~~~la~mNl~lhg~~~  281 (530)
T 3ufb_A          205 VVRFMVEVMD---PQLGESVLDPACGTGGFLVEAFEHLERQCKTVEDREVLQESSIFGGEAKSLPYLLVQMNLLLHGLEY  281 (530)
T ss_dssp             HHHHHHHHHC---CCTTCCEEETTCTTTHHHHHHHHHHHTTCCSHHHHHHHHTCCEEEECCSHHHHHHHHHHHHHHTCSC
T ss_pred             HHHHHHHhhc---cCCCCEEEeCCCCcchHHHHHHHHHHHhccchhHHHHHhhhhhhhhhccHHHHHHHHHHHHhcCCcc
Confidence            4455555555   4455689999999999998776532             2356899999 888777763      234


Q ss_pred             eeEEEecCCC-CC----C--cccEEEee
Q 034578           68 VSHVGGDMFD-AI----P--NADAVFMK   88 (90)
Q Consensus        68 v~~~~~d~~~-~~----p--~~D~i~l~   88 (90)
                      ..+..+|.+. +.    +  .||+|+.+
T Consensus       282 ~~I~~~dtL~~~~~~~~~~~~fD~Il~N  309 (530)
T 3ufb_A          282 PRIDPENSLRFPLREMGDKDRVDVILTN  309 (530)
T ss_dssp             CEEECSCTTCSCGGGCCGGGCBSEEEEC
T ss_pred             ccccccccccCchhhhcccccceEEEec
Confidence            4667788775 21    1  28999865

>1g60_A Adenine-specific methyltransferase MBOIIA; structural genomics, DNA methylation, S- adenosylmethionine, PSI, protein structure initiative; HET: SAM; 1.74A {Moraxella bovis} SCOP: c.66.1.11

Probab=97.06  E-value=0.00088  Score=43.69  Aligned_cols=52  Identities=17%  Similarity=0.082  Sum_probs=40.4

Q ss_pred             hhHHHHHhhcccCCCCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeeh-HHHHHhCCC
Q 034578            7 ITMKAFVSHYKVDGFNNIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDL-QHVIATAPT   64 (90)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~   64 (90)
                      .+.+.+++.+.    .+...|||..||+|..+.+..+.  +-+++++|+ |..++.+++
T Consensus       200 ~l~~~~i~~~~----~~~~~vlD~f~GsGtt~~~a~~~--gr~~ig~e~~~~~~~~~~~  252 (260)
T 1g60_A          200 DLIERIIRASS----NPNDLVLDCFMGSGTTAIVAKKL--GRNFIGCDMNAEYVNQANF  252 (260)
T ss_dssp             HHHHHHHHHHC----CTTCEEEESSCTTCHHHHHHHHT--TCEEEEEESCHHHHHHHHH
T ss_pred             HHHHHHHHHhC----CCCCEEEECCCCCCHHHHHHHHc--CCeEEEEeCCHHHHHHHHH
Confidence            34556665554    34579999999999999998887  568999999 888877654

>3eld_A Methyltransferase; flavivirus, RNA capping, guanylyltransfer viral enzyme structure; HET: SFG; 1.90A {Wesselsbron virus} PDB: 3elu_A* 3elw_A* 3ely_A* 3emb_A* 3emd_A*

Probab=96.66  E-value=0.0028  Score=42.69  Aligned_cols=35  Identities=14%  Similarity=0.152  Sum_probs=30.6

Q ss_pred             CCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeeh
Q 034578           21 FNNIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDL   55 (90)
Q Consensus        21 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~   55 (90)
                      +.+..++||+||++|.++..++++.+...+.++|+
T Consensus        79 ~~~g~~vlDLGaaPGgWsqva~~~~gv~sV~Gvdl  113 (300)
T 3eld_A           79 LRITGRVLDLGCGRGGWSYYAAAQKEVMSVKGYTL  113 (300)
T ss_dssp             CCCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECC
T ss_pred             CCCCCEEEEcCCCCCHHHHHHHHhcCCceeeeEEe
Confidence            56678999999999999999998777667888887

>1zkd_A DUF185; NESG, RPR58, structural genomics, PSI, protein structure INI northeast structural genomics consortium, unknown function; 2.10A {Rhodopseudomonas palustris} SCOP: c.66.1.52

Probab=96.47  E-value=0.006  Score=42.43  Aligned_cols=55  Identities=13%  Similarity=0.209  Sum_probs=35.6

Q ss_pred             hhhHHHHHhhcccCCCCCCCeEEEecCCchHHHHHHHHHC-------CCCeEEEeeh-HHHHH
Q 034578            6 KITMKAFVSHYKVDGFNNIRSMVDVGGGTGTVLAEIVKSY-------PHIKGINFDL-QHVIA   60 (90)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~-------p~~~~~~~D~-p~~~~   60 (90)
                      +.++..+++.+...+.+.+-.|+++|.|+|.++..+++..       ..+++..+|. |...+
T Consensus        63 e~la~~~~~~w~~~g~p~~~~ivElGaG~GtLa~diL~~l~~~p~~~~~~~y~iVE~Sp~Lr~  125 (387)
T 1zkd_A           63 ELLGLWSASVWKAADEPQTLRLIEIGPGRGTMMADALRALRVLPILYQSLSVHLVEINPVLRQ  125 (387)
T ss_dssp             HHHHHHHHHHHHHTTCCSSEEEEEECCTTSHHHHHHHHHHTTSHHHHTTEEEEEECCCHHHHH
T ss_pred             HHHHHHHHHHHHHcCCCCCcEEEEECCCcchHHHHHHHHHHhCCccccccEEEEEecCHHHHH
Confidence            3444555554331012334579999999999999888652       3458999998 65443

>1rjd_A PPM1P, carboxy methyl transferase for protein phosphatase 2A catalytic subunit; SAM dependent methyltransferase; HET: SAM; 1.80A {Saccharomyces cerevisiae} SCOP: c.66.1.37 PDB: 1rje_A* 1rjf_A 1rjg_A* 2ob2_A* 2ob1_A

Probab=96.43  E-value=0.0041  Score=42.25  Aligned_cols=55  Identities=15%  Similarity=0.339  Sum_probs=46.2

Q ss_pred             CCCeEEEecCCchHHHHHHHHHCCCCeEEEeehHHHHHhCCC---------------------------CCCeeEEEecC
Q 034578           23 NIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDLQHVIATAPT---------------------------HEGVSHVGGDM   75 (90)
Q Consensus        23 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~p~~~~~a~~---------------------------~~rv~~~~~d~   75 (90)
                      +...|+.+|||.....-.+...+|++++.-+|+|++++.-++                           .++.+++..|+
T Consensus        97 ~~~qVV~LGaGlDTr~~RL~~~~~~~~~~EvD~P~vi~~K~~~l~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~v~~DL  176 (334)
T 1rjd_A           97 EKVQVVNLGCGSDLRMLPLLQMFPHLAYVDIDYNESVELKNSILRESEILRISLGLSKEDTAKSPFLIDQGRYKLAACDL  176 (334)
T ss_dssp             SSEEEEEETCTTCCTHHHHHHHCTTEEEEEEECHHHHHHHHHHHHHSHHHHHHHTCCSSCCCCTTEEEECSSEEEEECCT
T ss_pred             CCcEEEEeCCCCccHHHHhcCcCCCCEEEECCCHHHHHHHHHHhhhccchhhhcccccccccccccccCCCceEEEecCC
Confidence            457899999999999999999888999999999887664321                           26899999999


Q ss_pred             CC
Q 034578           76 FD   77 (90)
Q Consensus        76 ~~   77 (90)
                      .+
T Consensus       177 ~d  178 (334)
T 1rjd_A          177 ND  178 (334)
T ss_dssp             TC
T ss_pred             CC
Confidence            87

>2py6_A Methyltransferase FKBM; YP_546752.1, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; 2.15A {Methylobacillus flagellatus KT} SCOP: c.66.1.56

Probab=96.40  E-value=0.0078  Score=41.78  Aligned_cols=41  Identities=20%  Similarity=0.245  Sum_probs=33.9

Q ss_pred             CCCCeEEEecCCchHHHHHHH-HHCCC-CeEEEeeh-HHHHHhC
Q 034578           22 NNIRSMVDVGGGTGTVLAEIV-KSYPH-IKGINFDL-QHVIATA   62 (90)
Q Consensus        22 ~~~~~vlDvG~G~G~~~~~l~-~~~p~-~~~~~~D~-p~~~~~a   62 (90)
                      .+...++|||++.|.++..++ +..+. .+++++|. |...+..
T Consensus       225 ~~~~~viDvGAn~G~~s~~~a~~~~~~~~~V~afEP~p~~~~~L  268 (409)
T 2py6_A          225 SDSEKMVDCGASIGESLAGLIGVTKGKFERVWMIEPDRINLQTL  268 (409)
T ss_dssp             CSSCEEEEETCTTSHHHHHHHHHHTSCCSEEEEECCCHHHHHHH
T ss_pred             CCCCEEEECCCCcCHHHHHHHHHhcCCCCEEEEEcCCHHHHHHH
Confidence            466899999999999999988 66765 89999997 7765544

>4fzv_A Putative methyltransferase NSUN4; mterf fold, methyltransferase fold, rRNA methyltransferase, mitochondria, transferase; HET: MSE SAM; 2.00A {Homo sapiens} PDB: 4fp9_A*

Probab=96.37  E-value=0.0042  Score=42.69  Aligned_cols=67  Identities=15%  Similarity=0.038  Sum_probs=49.9

Q ss_pred             CCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeeh-HHHHHhCCC------------CCCeeEEEecCCC--C-CCc-cc
Q 034578           21 FNNIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDL-QHVIATAPT------------HEGVSHVGGDMFD--A-IPN-AD   83 (90)
Q Consensus        21 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~------------~~rv~~~~~d~~~--~-~p~-~D   83 (90)
                      ..+..+|||+++|+|.=+..++...+..++++.|+ +.-++..++            ..++.+...|...  . .+. ||
T Consensus       146 ~~pg~~VLD~CAaPGGKT~~la~~~~~~~l~A~D~~~~R~~~l~~~l~r~~~~~~~~~~~v~v~~~D~~~~~~~~~~~fD  225 (359)
T 4fzv_A          146 LQPGDIVLDLCAAPGGKTLALLQTGCCRNLAANDLSPSRIARLQKILHSYVPEEIRDGNQVRVTSWDGRKWGELEGDTYD  225 (359)
T ss_dssp             CCTTEEEEESSCTTCHHHHHHHHTTCEEEEEEECSCHHHHHHHHHHHHHHSCTTTTTSSSEEEECCCGGGHHHHSTTCEE
T ss_pred             CCCCCEEEEecCCccHHHHHHHHhcCCCcEEEEcCCHHHHHHHHHHHHHhhhhhhccCCceEEEeCchhhcchhccccCC
Confidence            45678999999999999999999888778999998 654443321            2468888888765  1 233 89


Q ss_pred             EEEe
Q 034578           84 AVFM   87 (90)
Q Consensus        84 ~i~l   87 (90)
                      .|++
T Consensus       226 ~VLl  229 (359)
T 4fzv_A          226 RVLV  229 (359)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            9886

>2wk1_A NOVP; transferase, O-methyltransferase, novobiocin, TYLF superfamily; HET: SAH; 1.40A {Streptomyces caeruleus}

Probab=96.23  E-value=0.019  Score=38.19  Aligned_cols=66  Identities=18%  Similarity=0.060  Sum_probs=45.9

Q ss_pred             CCCCeEEEecCCchHHHHHHHHHC-----CCCeEEEeeh-HH--------------------------HHHhCCC-----
Q 034578           22 NNIRSMVDVGGGTGTVLAEIVKSY-----PHIKGINFDL-QH--------------------------VIATAPT-----   64 (90)
Q Consensus        22 ~~~~~vlDvG~G~G~~~~~l~~~~-----p~~~~~~~D~-p~--------------------------~~~~a~~-----   64 (90)
                      ..++.||++|+..|.-++.+++..     |+.+++++|. +.                          .++.+++     
T Consensus       105 ~~pg~IlEiGv~~G~Sai~ma~~l~~~g~~~~kI~~~DtfeG~pe~~~~~~~~d~~~~~~~~~~~~~~~~~~ar~n~~~~  184 (282)
T 2wk1_A          105 NVPGDLVETGVWRGGACILMRGILRAHDVRDRTVWVADSFQGIPDVGEDGYAGDRKMALHRRNSVLAVSEEEVRRNFRNY  184 (282)
T ss_dssp             TCCCEEEEECCTTSHHHHHHHHHHHHTTCCSCCEEEEECSSCSCCCCTTSCHHHHHHCGGGGHHHHCCCHHHHHHHHHHT
T ss_pred             CCCCcEEEeecCchHHHHHHHHHhHhcCCCCCEEEEEECCCCCCcccccccccccccccccccccchhHHHHHHHHHHHc
Confidence            346899999999999887776654     5788999993 11                          1122221     


Q ss_pred             ---CCCeeEEEecCCCC---CC--cccEEEe
Q 034578           65 ---HEGVSHVGGDMFDA---IP--NADAVFM   87 (90)
Q Consensus        65 ---~~rv~~~~~d~~~~---~p--~~D~i~l   87 (90)
                         .++++++.||+.+.   ++  .+|++++
T Consensus       185 gl~~~~I~li~Gda~etL~~~~~~~~d~vfI  215 (282)
T 2wk1_A          185 DLLDEQVRFLPGWFKDTLPTAPIDTLAVLRM  215 (282)
T ss_dssp             TCCSTTEEEEESCHHHHSTTCCCCCEEEEEE
T ss_pred             CCCcCceEEEEeCHHHHHhhCCCCCEEEEEE
Confidence               27899999999773   33  2788775

>2efj_A 3,7-dimethylxanthine methyltransferase; SAM-dependant methyltransferase, SAH, theobromine; HET: SAH 37T; 2.00A {Coffea canephora} PDB: 2eg5_A*

Probab=96.04  E-value=0.0049  Score=42.77  Aligned_cols=66  Identities=17%  Similarity=0.226  Sum_probs=43.3

Q ss_pred             CCeEEEecCCchHHHHHHHHH-----------------CCCCeEEEeehHH------------HHHhCCC----CCC---
Q 034578           24 IRSMVDVGGGTGTVLAEIVKS-----------------YPHIKGINFDLQH------------VIATAPT----HEG---   67 (90)
Q Consensus        24 ~~~vlDvG~G~G~~~~~l~~~-----------------~p~~~~~~~D~p~------------~~~~a~~----~~r---   67 (90)
                      .-+|+|+||++|..+..+...                 .|..++..-|+|.            ..+..++    ..+   
T Consensus        53 ~~~IaDlGCssG~NT~~~v~~ii~~i~~~~~~~~~~~~~pe~~v~~nDLp~NDFN~lF~~L~~~~~~~~~~~g~~~~~~f  132 (384)
T 2efj_A           53 CFKVGDLGCASGPNTFSTVRDIVQSIDKVGQEKKNELERPTIQIFLNDLFQNDFNSVFKLLPSFYRNLEKENGRKIGSCL  132 (384)
T ss_dssp             EEEEEEETCCSSHHHHHHHHHHHHHHTCC----------CEEEEEEECCTTSCHHHHHHHHHHHHHHHHHHTCCCTTSEE
T ss_pred             ceEEEecCCCCCchHHHHHHHHHHHHHHHhhhcccCCCCCceEEEecCCCccchHHHHhhhhhhHhhhhhhccCCCCceE
Confidence            578999999999988877766                 5788999999872            1111100    112   


Q ss_pred             eeEEEecCCC-CCCc--ccEEEeec
Q 034578           68 VSHVGGDMFD-AIPN--ADAVFMKV   89 (90)
Q Consensus        68 v~~~~~d~~~-~~p~--~D~i~l~~   89 (90)
                      +.-++|.|+. -+|.  +|+++.+.
T Consensus       133 ~~gvpgSFy~rlfp~~S~d~v~Ss~  157 (384)
T 2efj_A          133 IGAMPGSFYSRLFPEESMHFLHSCY  157 (384)
T ss_dssp             EEECCSCTTSCCSCTTCEEEEEEES
T ss_pred             EEecchhhhhccCCCCceEEEEecc
Confidence            3334567777 3564  89987664

>2oo3_A Protein involved in catabolism of external DNA; structural genomics, unknown function, PSI-2, protein structure initiative; 2.00A {Legionella pneumophila subsp} SCOP: c.66.1.59

Probab=95.71  E-value=0.0045  Score=41.41  Aligned_cols=62  Identities=11%  Similarity=0.068  Sum_probs=50.2

Q ss_pred             CCeEEEecCCchHHHHHHHHHCCCCeEEEeeh-HHHHHhCCCC----CCeeEEEecCCCC----CC---cccEEEe
Q 034578           24 IRSMVDVGGGTGTVLAEIVKSYPHIKGINFDL-QHVIATAPTH----EGVSHVGGDMFDA----IP---NADAVFM   87 (90)
Q Consensus        24 ~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~----~rv~~~~~d~~~~----~p---~~D~i~l   87 (90)
                      ...+||+=+|||.+++++++  +.-+++.+|+ |..++..+++    ++++++..|.++.    .|   .+|+|++
T Consensus        92 ~~~~LDlfaGSGaLgiEaLS--~~d~~vfvE~~~~a~~~L~~Nl~~~~~~~V~~~D~~~~L~~l~~~~~~fdLVfi  165 (283)
T 2oo3_A           92 LNSTLSYYPGSPYFAINQLR--SQDRLYLCELHPTEYNFLLKLPHFNKKVYVNHTDGVSKLNALLPPPEKRGLIFI  165 (283)
T ss_dssp             SSSSCCEEECHHHHHHHHSC--TTSEEEEECCSHHHHHHHTTSCCTTSCEEEECSCHHHHHHHHCSCTTSCEEEEE
T ss_pred             CCCceeEeCCcHHHHHHHcC--CCCeEEEEeCCHHHHHHHHHHhCcCCcEEEEeCcHHHHHHHhcCCCCCccEEEE
Confidence            45689999999999999999  4578999999 8888776663    6799999997651    22   3899986

>1g55_A DNA cytosine methyltransferase DNMT2; human DNA methyltransferase homologue; HET: DNA SAH; 1.80A {Homo sapiens} SCOP: c.66.1.26

Probab=95.18  E-value=0.024  Score=38.42  Aligned_cols=64  Identities=9%  Similarity=0.065  Sum_probs=47.4

Q ss_pred             CeEEEecCCchHHHHHHHHHCCC-CeEEEeeh-HHHHHhCCCC-CCeeEEEecCCCC----CC--cccEEEee
Q 034578           25 RSMVDVGGGTGTVLAEIVKSYPH-IKGINFDL-QHVIATAPTH-EGVSHVGGDMFDA----IP--NADAVFMK   88 (90)
Q Consensus        25 ~~vlDvG~G~G~~~~~l~~~~p~-~~~~~~D~-p~~~~~a~~~-~rv~~~~~d~~~~----~p--~~D~i~l~   88 (90)
                      .+++|+-||.|.++..+.++.-. -.+.++|+ +.+++..+.+ +...++.+|+.+-    ++  .+|+++.+
T Consensus         3 ~~v~dLFaG~Gg~~~g~~~~G~~~~~v~~~E~d~~a~~~~~~N~~~~~~~~~Di~~~~~~~~~~~~~D~l~~g   75 (343)
T 1g55_A            3 LRVLELYSGVGGMHHALRESCIPAQVVAAIDVNTVANEVYKYNFPHTQLLAKTIEGITLEEFDRLSFDMILMS   75 (343)
T ss_dssp             EEEEEETCTTCHHHHHHHHHTCSEEEEEEECCCHHHHHHHHHHCTTSCEECSCGGGCCHHHHHHHCCSEEEEC
T ss_pred             CeEEEeCcCccHHHHHHHHCCCCceEEEEEeCCHHHHHHHHHhccccccccCCHHHccHhHcCcCCcCEEEEc
Confidence            47999999999999999998532 24788998 8888776653 4456778888762    23  37888764

>3r24_A NSP16, 2'-O-methyl transferase; methyltransferase, zinc-finger, transferase, viral protein; HET: SAM; 2.00A {Sars coronavirus}

Probab=94.89  E-value=0.027  Score=38.29  Aligned_cols=59  Identities=17%  Similarity=0.220  Sum_probs=38.5

Q ss_pred             CCCCeEEEecC------CchHHHHHHHHHCCC-CeEEEeehHHHHHhCCCCCCeeEEEecCCC-CCC-cccEEEe
Q 034578           22 NNIRSMVDVGG------GTGTVLAEIVKSYPH-IKGINFDLQHVIATAPTHEGVSHVGGDMFD-AIP-NADAVFM   87 (90)
Q Consensus        22 ~~~~~vlDvG~------G~G~~~~~l~~~~p~-~~~~~~D~p~~~~~a~~~~rv~~~~~d~~~-~~p-~~D~i~l   87 (90)
                      +...+|||+|+      .+|..  .+.+..|. ..++.+|+.++...    .. .++.||+.+ ... .+|+|+.
T Consensus       108 p~gmrVLDLGA~s~kg~APGS~--VLr~~~p~g~~VVavDL~~~~sd----a~-~~IqGD~~~~~~~~k~DLVIS  175 (344)
T 3r24_A          108 PYNMRVIHFGAGSDKGVAPGTA--VLRQWLPTGTLLVDSDLNDFVSD----AD-STLIGDCATVHTANKWDLIIS  175 (344)
T ss_dssp             CTTCEEEEESCCCTTSBCHHHH--HHHHHSCTTCEEEEEESSCCBCS----SS-EEEESCGGGEEESSCEEEEEE
T ss_pred             cCCCEEEeCCCCCCCCCCCcHH--HHHHhCCCCcEEEEeeCcccccC----CC-eEEEccccccccCCCCCEEEe
Confidence            34579999995      78884  33344776 69999998333221    12 558899765 222 3898874

>3g7u_A Cytosine-specific methyltransferase; DNA-binding, NAD-binding, structural GENO protein structure initiative, PSI; 1.75A {Escherichia coli O157}

Probab=94.38  E-value=0.058  Score=37.14  Aligned_cols=62  Identities=19%  Similarity=0.234  Sum_probs=46.1

Q ss_pred             CeEEEecCCchHHHHHHHHHCCCCe-EEEeeh-HHHHHhCCCC-CCeeEEEecCCCC----C-------CcccEEEee
Q 034578           25 RSMVDVGGGTGTVLAEIVKSYPHIK-GINFDL-QHVIATAPTH-EGVSHVGGDMFDA----I-------PNADAVFMK   88 (90)
Q Consensus        25 ~~vlDvG~G~G~~~~~l~~~~p~~~-~~~~D~-p~~~~~a~~~-~rv~~~~~d~~~~----~-------p~~D~i~l~   88 (90)
                      -+++|+-||.|.++..+.++.  .+ +.++|+ +.+++..+.+ +...++.+|+.+-    +       +.+|+++.+
T Consensus         3 ~~vidLFsG~GGlslG~~~aG--~~~v~avE~d~~a~~t~~~N~~~~~~~~~DI~~~~~~~~~~~~~~~~~~D~i~gg   78 (376)
T 3g7u_A            3 LNVIDLFSGVGGLSLGAARAG--FDVKMAVEIDQHAINTHAINFPRSLHVQEDVSLLNAEIIKGFFKNDMPIDGIIGG   78 (376)
T ss_dssp             CEEEEETCTTSHHHHHHHHHT--CEEEEEECSCHHHHHHHHHHCTTSEEECCCGGGCCHHHHHHHHCSCCCCCEEEEC
T ss_pred             CeEEEEccCcCHHHHHHHHCC--CcEEEEEeCCHHHHHHHHHhCCCCceEecChhhcCHHHHHhhcccCCCeeEEEec
Confidence            379999999999999999884  54 568998 8877765543 5667788888652    1       247888764

>2c7p_A Modification methylase HHAI; DNA methyltransferase, methyltransferase, base flipping, restriction system, transferase; HET: 5CM A1P SAH EPE CIT; 1.7A {Haemophilus haemolyticus} SCOP: c.66.1.26 PDB: 10mh_A* 1m0e_A* 1mht_A* 1hmy_A* 1skm_A* 2c7o_A* 2c7q_A* 2hmy_B* 2hr1_A* 3eeo_A* 3mht_A* 4mht_A* 5mht_A* 6mht_A* 7mht_A* 8mht_A* 9mht_A* 2zcj_A* 2z6u_A* 2z6q_A* ...

Probab=94.27  E-value=0.041  Score=37.15  Aligned_cols=61  Identities=13%  Similarity=0.119  Sum_probs=42.8

Q ss_pred             CCeEEEecCCchHHHHHHHHHCCCCe-EEEeeh-HHHHHhCCCC-CCeeEEEecCCC----CCCcccEEEee
Q 034578           24 IRSMVDVGGGTGTVLAEIVKSYPHIK-GINFDL-QHVIATAPTH-EGVSHVGGDMFD----AIPNADAVFMK   88 (90)
Q Consensus        24 ~~~vlDvG~G~G~~~~~l~~~~p~~~-~~~~D~-p~~~~~a~~~-~rv~~~~~d~~~----~~p~~D~i~l~   88 (90)
                      .-+++|+-||.|.++..+.++.  .+ +.++|+ +.+++.-+.+ +...  .+|+.+    .++.+|+++.+
T Consensus        11 ~~~~~dLFaG~Gg~~~g~~~aG--~~~v~~~e~d~~a~~t~~~N~~~~~--~~Di~~~~~~~~~~~D~l~~g   78 (327)
T 2c7p_A           11 GLRFIDLFAGLGGFRLALESCG--AECVYSNEWDKYAQEVYEMNFGEKP--EGDITQVNEKTIPDHDILCAG   78 (327)
T ss_dssp             TCEEEEETCTTTHHHHHHHHTT--CEEEEEECCCHHHHHHHHHHHSCCC--BSCGGGSCGGGSCCCSEEEEE
T ss_pred             CCcEEEECCCcCHHHHHHHHCC--CeEEEEEeCCHHHHHHHHHHcCCCC--cCCHHHcCHhhCCCCCEEEEC
Confidence            3689999999999999999873  44 667898 8777655442 1111  467665    24558888765

>1m6e_X S-adenosyl-L-methionnine:salicylic acid carboxyl methyltransferase; rossmann fold, protein-small molecule complex; HET: SAH SAL; 3.00A {Clarkia breweri} SCOP: c.66.1.35

Probab=94.09  E-value=0.0096  Score=40.97  Aligned_cols=67  Identities=18%  Similarity=0.273  Sum_probs=41.8

Q ss_pred             CCCeEEEecCCchHHHHHHHHH----------------CCCCeEEEeehHH-HHH---hC-CC---CCC---eeEEEecC
Q 034578           23 NIRSMVDVGGGTGTVLAEIVKS----------------YPHIKGINFDLQH-VIA---TA-PT---HEG---VSHVGGDM   75 (90)
Q Consensus        23 ~~~~vlDvG~G~G~~~~~l~~~----------------~p~~~~~~~D~p~-~~~---~a-~~---~~r---v~~~~~d~   75 (90)
                      +.-+|+|+||++|..+..+...                .|..++..-|+|. ...   .. ..   ..+   +.-++|.|
T Consensus        51 ~~~~IaDlGCs~G~Nt~~~v~~ii~~i~~~~~~~~~~~~pe~~v~~nDLp~NDFntlF~~L~~~~~~~~~~f~~gvpgSF  130 (359)
T 1m6e_X           51 TRLAIADLGCSSGPNALFAVTELIKTVEELRKKMGRENSPEYQIFLNDLPGNDFNAIFRSLPIENDVDGVCFINGVPGSF  130 (359)
T ss_dssp             SEECCEEESCCSSTTTTTGGGTTHHHHHHHHHSSSCSSCCEEEEEEEECTTSCHHHHHTTTTTSCSCTTCEEEEEEESCS
T ss_pred             CceEEEecCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCCceEEEecCCCchHHHHHHHhcchhcccCCCEEEEecchhh
Confidence            4467999999999655433322                5788999999854 221   11 11   112   34456788


Q ss_pred             CC-CCCc--ccEEEeec
Q 034578           76 FD-AIPN--ADAVFMKV   89 (90)
Q Consensus        76 ~~-~~p~--~D~i~l~~   89 (90)
                      +. -+|.  .|+++.+.
T Consensus       131 y~rlfp~~S~d~v~Ss~  147 (359)
T 1m6e_X          131 YGRLFPRNTLHFIHSSY  147 (359)
T ss_dssp             SSCCSCTTCBSCEEEES
T ss_pred             hhccCCCCceEEEEehh
Confidence            87 4565  89887653

>1boo_A Protein (N-4 cytosine-specific methyltransferase PVU II); type II DNA-(cytosine N4) methyltransferase, amino methylation, selenomethionine; HET: SAH; 2.80A {Proteus vulgaris} SCOP: c.66.1.11

Probab=93.36  E-value=0.15  Score=34.13  Aligned_cols=52  Identities=19%  Similarity=0.206  Sum_probs=40.1

Q ss_pred             hhHHHHHhhcccCCCCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeeh-HHHHHhCCC
Q 034578            7 ITMKAFVSHYKVDGFNNIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDL-QHVIATAPT   64 (90)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~   64 (90)
                      .+.+.+++.+.    .+...|||-=||+|..+.+..+.  +-+.+++|+ |..++.+++
T Consensus       240 ~l~~~~i~~~~----~~~~~VlDpF~GsGtt~~aa~~~--gr~~ig~e~~~~~~~~~~~  292 (323)
T 1boo_A          240 KLPEFFIRMLT----EPDDLVVDIFGGSNTTGLVAERE--SRKWISFEMKPEYVAASAF  292 (323)
T ss_dssp             HHHHHHHHHHC----CTTCEEEETTCTTCHHHHHHHHT--TCEEEEEESCHHHHHHHHG
T ss_pred             HHHHHHHHHhC----CCCCEEEECCCCCCHHHHHHHHc--CCCEEEEeCCHHHHHHHHH
Confidence            34555665543    34578999999999999998887  578999999 888777654

>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus}

Probab=93.09  E-value=0.26  Score=28.47  Aligned_cols=62  Identities=18%  Similarity=0.205  Sum_probs=40.1

Q ss_pred             CCeEEEecCCchHHHHHHHHHC--CCCeEEEeeh-HHHHHhCCCCCCeeEEEecCCCC-------CCcccEEEee
Q 034578           24 IRSMVDVGGGTGTVLAEIVKSY--PHIKGINFDL-QHVIATAPTHEGVSHVGGDMFDA-------IPNADAVFMK   88 (90)
Q Consensus        24 ~~~vlDvG~G~G~~~~~l~~~~--p~~~~~~~D~-p~~~~~a~~~~rv~~~~~d~~~~-------~p~~D~i~l~   88 (90)
                      ..+++=+|+|.  ++..+++..  .+.+++++|. |+.++..++. ...++.+|..++       +..+|+++..
T Consensus         6 ~~~v~I~G~G~--iG~~la~~L~~~g~~V~~id~~~~~~~~~~~~-~~~~~~gd~~~~~~l~~~~~~~~d~vi~~   77 (141)
T 3llv_A            6 RYEYIVIGSEA--AGVGLVRELTAAGKKVLAVDKSKEKIELLEDE-GFDAVIADPTDESFYRSLDLEGVSAVLIT   77 (141)
T ss_dssp             CCSEEEECCSH--HHHHHHHHHHHTTCCEEEEESCHHHHHHHHHT-TCEEEECCTTCHHHHHHSCCTTCSEEEEC
T ss_pred             CCEEEEECCCH--HHHHHHHHHHHCCCeEEEEECCHHHHHHHHHC-CCcEEECCCCCHHHHHhCCcccCCEEEEe
Confidence            35788899853  444444432  2568999998 7766655433 467888998762       2347887753

>2uyo_A Hypothetical protein ML2640; putative methyltransferase, transferas; 1.7A {Mycobacterium leprae} SCOP: c.66.1.57 PDB: 2ckd_A 2uyq_A*

Probab=92.87  E-value=0.1  Score=35.01  Aligned_cols=53  Identities=19%  Similarity=0.213  Sum_probs=40.4

Q ss_pred             CCCeEEEecCCchHHHHHHHHHCC-CCeEEEeehHHHHHhCC---------CCCCeeEEEecCCC
Q 034578           23 NIRSMVDVGGGTGTVLAEIVKSYP-HIKGINFDLQHVIATAP---------THEGVSHVGGDMFD   77 (90)
Q Consensus        23 ~~~~vlDvG~G~G~~~~~l~~~~p-~~~~~~~D~p~~~~~a~---------~~~rv~~~~~d~~~   77 (90)
                      +...||++|||-=.....+.  +| ..+++-+|.|.+++..+         ..++..++..|+.+
T Consensus       102 g~~QvV~LGaGlDTra~Rl~--~~~~~~v~evD~P~vi~~k~~lL~~~~~~~~~~~~~v~~Dl~d  164 (310)
T 2uyo_A          102 GIRQFVILASGLDSRAYRLD--WPTGTTVYEIDQPKVLAYKSTTLAEHGVTPTADRREVPIDLRQ  164 (310)
T ss_dssp             TCCEEEEETCTTCCHHHHSC--CCTTCEEEEEECHHHHHHHHHHHHHTTCCCSSEEEEEECCTTS
T ss_pred             CCCeEEEeCCCCCchhhhcc--CCCCcEEEEcCCHHHHHHHHHHHHhcCCCCCCCeEEEecchHh
Confidence            45679999999888766654  35 47899999998876543         24778999999876

>4f3n_A Uncharacterized ACR, COG1565 superfamily; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.75A {Burkholderia thailandensis} PDB: 4g67_A*

Probab=92.58  E-value=0.051  Score=38.33  Aligned_cols=49  Identities=16%  Similarity=0.280  Sum_probs=33.1

Q ss_pred             hhHHHHHhhcccCCCCCCCeEEEecCCchHHHHHHHHHCC-----CCeEEEeeh-HHH
Q 034578            7 ITMKAFVSHYKVDGFNNIRSMVDVGGGTGTVLAEIVKSYP-----HIKGINFDL-QHV   58 (90)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p-----~~~~~~~D~-p~~   58 (90)
                      .++..+++.+..   .+..+|+++|.|+|.++..+++...     ..++..+|. |..
T Consensus       124 ~la~~~~~~~~~---~g~~~ivE~GaG~GtLa~DiL~~l~~~~~~~~~y~iVE~Sp~L  178 (432)
T 4f3n_A          124 TLARPVAQALDA---SGTRRVMEFGAGTGKLAAGLLTALAALGVELDEYAIVDLSGEL  178 (432)
T ss_dssp             HHHHHHHHHHHH---HTCCEEEEESCTTSHHHHHHHHHHHHTTCCCSEEEEECTTSSS
T ss_pred             HHHHHHHHHHHh---cCCCeEEEeCCCccHHHHHHHHHHHhcCCCCceEEEEEcCHHH
Confidence            344444554442   2346899999999999988876542     237899997 543

>3iht_A S-adenosyl-L-methionine methyl transferase; YP_165822.1, STR genomics, joint center for structural genomics, JCSG; HET: MSE SAM; 1.80A {Ruegeria pomeroyi dss-3}

Probab=92.19  E-value=0.63  Score=28.77  Aligned_cols=43  Identities=9%  Similarity=0.138  Sum_probs=34.6

Q ss_pred             HHHHHhhcccCCCCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeeh
Q 034578            9 MKAFVSHYKVDGFNNIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDL   55 (90)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~   55 (90)
                      -++.++...    .-..-|+|+|=|+|..-..+.+.+|+-.+.++|.
T Consensus        30 L~~a~~~v~----~~~GpVlElGLGNGRTydHLRe~~P~R~I~vfDR   72 (174)
T 3iht_A           30 LEHAIAQTA----GLSGPVYELGLGNGRTYHHLRQHVQGREIYVFER   72 (174)
T ss_dssp             HHHHHHHTT----TCCSCEEEECCTTCHHHHHHHHHCCSSCEEEEES
T ss_pred             HHHHHHHhc----CCCCceEEecCCCChhHHHHHHhCCCCcEEEEEe
Confidence            344444444    2346799999999999999999999999999993

>2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A*

Probab=92.00  E-value=1.1  Score=26.28  Aligned_cols=65  Identities=22%  Similarity=0.234  Sum_probs=40.1

Q ss_pred             CCCeEEEecCCc-hHHHHHHHHHCCCCeEEEeeh-HHHHHhCCCCCCeeEEEecCCC-----C--CCcccEEEee
Q 034578           23 NIRSMVDVGGGT-GTVLAEIVKSYPHIKGINFDL-QHVIATAPTHEGVSHVGGDMFD-----A--IPNADAVFMK   88 (90)
Q Consensus        23 ~~~~vlDvG~G~-G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~~rv~~~~~d~~~-----~--~p~~D~i~l~   88 (90)
                      ...+++=+|+|. |......+++. +.+++++|. ++.++.+++.....++.+|..+     .  +..+|+++..
T Consensus        18 ~~~~v~IiG~G~iG~~la~~L~~~-g~~V~vid~~~~~~~~~~~~~g~~~~~~d~~~~~~l~~~~~~~ad~Vi~~   91 (155)
T 2g1u_A           18 KSKYIVIFGCGRLGSLIANLASSS-GHSVVVVDKNEYAFHRLNSEFSGFTVVGDAAEFETLKECGMEKADMVFAF   91 (155)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHT-TCEEEEEESCGGGGGGSCTTCCSEEEESCTTSHHHHHTTTGGGCSEEEEC
T ss_pred             CCCcEEEECCCHHHHHHHHHHHhC-CCeEEEEECCHHHHHHHHhcCCCcEEEecCCCHHHHHHcCcccCCEEEEE
Confidence            457899999863 44444444443 468999998 7777666622335566677643     1  2347888753

>1eg2_A Modification methylase RSRI; rossmann fold, exocyclic amino DNA methyltransferase RSRI, D binding, DNA modification, DNA methylation; HET: MTA; 1.75A {Rhodobacter sphaeroides} SCOP: c.66.1.11 PDB: 1nw5_A* 1nw6_A* 1nw7_A* 1nw8_A

Probab=90.80  E-value=0.4  Score=32.18  Aligned_cols=52  Identities=13%  Similarity=0.140  Sum_probs=40.4

Q ss_pred             hhHHHHHhhcccCCCCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeeh-H---HHHHhCCC
Q 034578            7 ITMKAFVSHYKVDGFNNIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDL-Q---HVIATAPT   64 (90)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-p---~~~~~a~~   64 (90)
                      .+.+.+++.+.    .....|||-=||+|..+.+..+.  +-+.+++|+ |   ..++.+++
T Consensus       230 ~l~~~~i~~~~----~~~~~vlDpF~GsGtt~~aa~~~--~r~~ig~e~~~~~~~~~~~~~~  285 (319)
T 1eg2_A          230 AVIERLVRALS----HPGSTVLDFFAGSGVTARVAIQE--GRNSICTDAAPVFKEYYQKQLT  285 (319)
T ss_dssp             HHHHHHHHHHS----CTTCEEEETTCTTCHHHHHHHHH--TCEEEEEESSTHHHHHHHHHHH
T ss_pred             HHHHHHHHHhC----CCCCEEEecCCCCCHHHHHHHHc--CCcEEEEECCccHHHHHHHHHH
Confidence            45666666554    34679999999999999999988  578999999 7   77766543

>3qv2_A 5-cytosine DNA methyltransferase; DNMT2, ehmeth; HET: SAH; 2.15A {Entamoeba histolytica}

Probab=90.51  E-value=0.083  Score=35.74  Aligned_cols=64  Identities=17%  Similarity=0.209  Sum_probs=43.8

Q ss_pred             CCeEEEecCCchHHHHHHHHHCCCCe-E-EEeeh-HHHHHhCCCC-CCeeEEEecCCC-C---CC--cccEEEee
Q 034578           24 IRSMVDVGGGTGTVLAEIVKSYPHIK-G-INFDL-QHVIATAPTH-EGVSHVGGDMFD-A---IP--NADAVFMK   88 (90)
Q Consensus        24 ~~~vlDvG~G~G~~~~~l~~~~p~~~-~-~~~D~-p~~~~~a~~~-~rv~~~~~d~~~-~---~p--~~D~i~l~   88 (90)
                      .-+++|+-||.|.+...+.++.-..+ + .++|+ +.+.+.-+.+ +.. ++.+|+.+ .   ++  .+|+++.+
T Consensus        10 ~~~vidLFaG~GG~~~G~~~aG~~~~~v~~a~e~d~~a~~ty~~N~~~~-~~~~DI~~~~~~~i~~~~~Dil~gg   83 (327)
T 3qv2_A           10 QVNVIEFFSGIGGLRSSYERSSININATFIPFDINEIANKIYSKNFKEE-VQVKNLDSISIKQIESLNCNTWFMS   83 (327)
T ss_dssp             CEEEEEETCTTTHHHHHHHHSSCCCCEEEEEECCCHHHHHHHHHHHCCC-CBCCCTTTCCHHHHHHTCCCEEEEC
T ss_pred             CCEEEEECCChhHHHHHHHHcCCCceEEEEEEECCHHHHHHHHHHCCCC-cccCChhhcCHHHhccCCCCEEEec
Confidence            45899999999999999998742234 4 58998 8777655442 222 55677765 1   33  36888764

>2dph_A Formaldehyde dismutase; dismutation of aldehydes, oxidoreductase; HET: NAD; 2.27A {Pseudomonas putida}

Probab=90.32  E-value=0.72  Score=31.37  Aligned_cols=45  Identities=13%  Similarity=-0.015  Sum_probs=35.6

Q ss_pred             CCCCCeEEEecCCc-hHHHHHHHHHCCCCeEEEeeh-HHHHHhCCCC
Q 034578           21 FNNIRSMVDVGGGT-GTVLAEIVKSYPHIKGINFDL-QHVIATAPTH   65 (90)
Q Consensus        21 ~~~~~~vlDvG~G~-G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~   65 (90)
                      +....+||-+|+|. |.++..+++..-..+++++|. ++-.+.+++.
T Consensus       183 ~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~l  229 (398)
T 2dph_A          183 VKPGSHVYIAGAGPVGRCAAAGARLLGAACVIVGDQNPERLKLLSDA  229 (398)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHTT
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHc
Confidence            55678999999986 899999999864338999997 7777776653

>3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating complex, structural GEN PSI-2-2, protein structure initiative; HET: AMP; 3.45A {Thermotoga maritima}

Probab=89.31  E-value=0.47  Score=29.50  Aligned_cols=60  Identities=13%  Similarity=0.183  Sum_probs=38.7

Q ss_pred             EEEecCCchHHHHHHHHHC--CCCeEEEeeh-HHHHHhCCCCCCeeEEEecCCCC-------CCcccEEEee
Q 034578           27 MVDVGGGTGTVLAEIVKSY--PHIKGINFDL-QHVIATAPTHEGVSHVGGDMFDA-------IPNADAVFMK   88 (90)
Q Consensus        27 vlDvG~G~G~~~~~l~~~~--p~~~~~~~D~-p~~~~~a~~~~rv~~~~~d~~~~-------~p~~D~i~l~   88 (90)
                      |+=+|+  |.++..+++..  .+..++++|. |+.++...+...+.++.+|..++       +..+|+++..
T Consensus         3 iiIiG~--G~~G~~la~~L~~~g~~v~vid~~~~~~~~l~~~~~~~~i~gd~~~~~~l~~a~i~~ad~vi~~   72 (218)
T 3l4b_C            3 VIIIGG--ETTAYYLARSMLSRKYGVVIINKDRELCEEFAKKLKATIIHGDGSHKEILRDAEVSKNDVVVIL   72 (218)
T ss_dssp             EEEECC--HHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHHSSSEEEESCTTSHHHHHHHTCCTTCEEEEC
T ss_pred             EEEECC--CHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHcCCeEEEcCCCCHHHHHhcCcccCCEEEEe
Confidence            555665  66666655543  3568999998 77666533333567889998762       3448888763

>4h0n_A DNMT2; SAH binding, transferase; HET: SAH; 2.71A {Spodoptera frugiperda}

Probab=89.28  E-value=0.17  Score=34.29  Aligned_cols=64  Identities=13%  Similarity=0.152  Sum_probs=44.8

Q ss_pred             CeEEEecCCchHHHHHHHHHCCCCe-EEEeeh-HHHHHhCCCC-CCeeEEEecCCCC----CC--cccEEEee
Q 034578           25 RSMVDVGGGTGTVLAEIVKSYPHIK-GINFDL-QHVIATAPTH-EGVSHVGGDMFDA----IP--NADAVFMK   88 (90)
Q Consensus        25 ~~vlDvG~G~G~~~~~l~~~~p~~~-~~~~D~-p~~~~~a~~~-~rv~~~~~d~~~~----~p--~~D~i~l~   88 (90)
                      -+++|+-||.|.+...+.++.-..+ +.++|+ +.+.+.-+.+ +...++.+|+.+-    ++  .+|+++.+
T Consensus         4 ~~~idLFaG~GG~~~G~~~aG~~~~~v~a~e~d~~a~~ty~~N~~~~~~~~~DI~~~~~~~~~~~~~D~l~gg   76 (333)
T 4h0n_A            4 HKILELYSGIGGMHCAWKESGLDGEIVAAVDINTVANSVYKHNFPETNLLNRNIQQLTPQVIKKWNVDTILMS   76 (333)
T ss_dssp             EEEEEETCTTTHHHHHHHHHTCSEEEEEEECCCHHHHHHHHHHCTTSCEECCCGGGCCHHHHHHTTCCEEEEC
T ss_pred             CEEEEECcCccHHHHHHHHcCCCceEEEEEeCCHHHHHHHHHhCCCCceeccccccCCHHHhccCCCCEEEec
Confidence            4799999999999999998853334 568898 7776654432 4455667787651    33  37887754

>3vrd_B FCCB subunit, flavocytochrome C flavin subunit; sulfide oxidation, heme C binding, FAD binding, electron TRA oxidoreductase complex; HET: HEC FAD; 1.50A {Thermochromatium tepidum} PDB: 1fcd_A*

Probab=89.03  E-value=0.64  Score=31.27  Aligned_cols=32  Identities=38%  Similarity=0.422  Sum_probs=26.5

Q ss_pred             CCeEEEecCCchHHHHH--HHHHCCCCeEEEeeh
Q 034578           24 IRSMVDVGGGTGTVLAE--IVKSYPHIKGINFDL   55 (90)
Q Consensus        24 ~~~vlDvG~G~G~~~~~--l~~~~p~~~~~~~D~   55 (90)
                      .++|+=||+|++.+..+  |++..++++++.+|.
T Consensus         2 GKkVvIIG~G~AG~~aA~~L~~~~~~~~Vtlie~   35 (401)
T 3vrd_B            2 GRKVVVVGGGTGGATAAKYIKLADPSIEVTLIEP   35 (401)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHCTTSEEEEECS
T ss_pred             cCEEEEECCcHHHHHHHHHHHhcCcCCeEEEEeC
Confidence            36899999999886655  777788999999994

>2qrv_A DNA (cytosine-5)-methyltransferase 3A; DNA methyltransferase 3A (DNMT3A) and ITS regulatory factor; HET: DNA SAH; 2.89A {Homo sapiens}

Probab=88.66  E-value=0.49  Score=31.51  Aligned_cols=67  Identities=18%  Similarity=0.128  Sum_probs=46.6

Q ss_pred             CCCCeEEEecCCchHHHHHHHHHCCCCe-EEEeeh-HHHHHhCCC-CCCeeEEEecCCCC----CC---cccEEEee
Q 034578           22 NNIRSMVDVGGGTGTVLAEIVKSYPHIK-GINFDL-QHVIATAPT-HEGVSHVGGDMFDA----IP---NADAVFMK   88 (90)
Q Consensus        22 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~-~~~~D~-p~~~~~a~~-~~rv~~~~~d~~~~----~p---~~D~i~l~   88 (90)
                      ...-+++|+=||.|.+...+.++.-..+ +.++|+ +.+.+.-+. .+...++.+|+.+-    ++   .+|+++.+
T Consensus        14 ~~~~~vidLFaG~GG~~~g~~~aG~~~~~v~a~E~d~~a~~ty~~N~~~~~~~~~DI~~i~~~~i~~~~~~Dll~gg   90 (295)
T 2qrv_A           14 RKPIRVLSLFDGIATGLLVLKDLGIQVDRYIASEVCEDSITVGMVRHQGKIMYVGDVRSVTQKHIQEWGPFDLVIGG   90 (295)
T ss_dssp             CCCEEEEEETCTTTHHHHHHHHTTBCEEEEEEECCCHHHHHHHHHHTTTCEEEECCGGGCCHHHHHHTCCCSEEEEC
T ss_pred             CCCCEEEEeCcCccHHHHHHHHCCCccceEEEEECCHHHHHHHHHhCCCCceeCCChHHccHHHhcccCCcCEEEec
Confidence            3456899999999999999998754443 578998 777664333 23446777888651    22   47888754

>3b1f_A Putative prephenate dehydrogenase; enzyme, 4-hydroxyphenylpyruvate, oxidative decarboxylation pathway, tyrosine biosynthesis, oxidoreduct; HET: NAD; 2.10A {Streptococcus mutans} PDB: 3dzb_A

Probab=88.10  E-value=1.4  Score=28.41  Aligned_cols=64  Identities=17%  Similarity=0.199  Sum_probs=37.7

Q ss_pred             CeEEEecCCc--hHHHHHHHHHCCCCeEEEeeh-HHHHHhCCCCCCeeEEEecCCCCCCcccEEEee
Q 034578           25 RSMVDVGGGT--GTVLAEIVKSYPHIKGINFDL-QHVIATAPTHEGVSHVGGDMFDAIPNADAVFMK   88 (90)
Q Consensus        25 ~~vlDvG~G~--G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~~rv~~~~~d~~~~~p~~D~i~l~   88 (90)
                      .+|.=||+|.  +.++..+++..+..+++++|. ++..+.+++.+.......|..+.+..+|+|++.
T Consensus         7 ~~I~iIG~G~mG~~~a~~l~~~g~~~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~~~aDvVila   73 (290)
T 3b1f_A            7 KTIYIAGLGLIGASLALGIKRDHPHYKIVGYNRSDRSRDIALERGIVDEATADFKVFAALADVIILA   73 (290)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSSHHHHHHHHHTTSCSEEESCTTTTGGGCSEEEEC
T ss_pred             ceEEEEeeCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHHcCCcccccCCHHHhhcCCCEEEEc
Confidence            4688899874  335566666555678999998 666554433222111223443334458998874

>3ubt_Y Modification methylase HAEIII; protein-DNA complex, DNA cytosine-5 methyltransferase, DNA B S-adenosyl methionine binding; HET: ATP 2PE; 2.50A {Haemophilus aegyptius} PDB: 1dct_A*

Probab=88.04  E-value=0.49  Score=31.28  Aligned_cols=61  Identities=13%  Similarity=0.231  Sum_probs=43.4

Q ss_pred             eEEEecCCchHHHHHHHHHCCCCe-EEEeeh-HHHHHhCCCCCCeeEEEecCCC----CCCcccEEEee
Q 034578           26 SMVDVGGGTGTVLAEIVKSYPHIK-GINFDL-QHVIATAPTHEGVSHVGGDMFD----AIPNADAVFMK   88 (90)
Q Consensus        26 ~vlDvG~G~G~~~~~l~~~~p~~~-~~~~D~-p~~~~~a~~~~rv~~~~~d~~~----~~p~~D~i~l~   88 (90)
                      +++|+=||.|.+...+.++.  .+ +.++|+ +.+.+.-+.+-.-+++.+|+.+    .+|+.|+++.+
T Consensus         2 kvidLFsG~GG~~~G~~~aG--~~~v~a~e~d~~a~~ty~~N~~~~~~~~DI~~i~~~~~~~~D~l~gg   68 (331)
T 3ubt_Y            2 NLISLFSGAGGLDLGFQKAG--FRIICANEYDKSIWKTYESNHSAKLIKGDISKISSDEFPKCDGIIGG   68 (331)
T ss_dssp             EEEEESCTTCHHHHHHHHTT--CEEEEEEECCTTTHHHHHHHCCSEEEESCGGGCCGGGSCCCSEEECC
T ss_pred             eEEEeCcCccHHHHHHHHCC--CEEEEEEeCCHHHHHHHHHHCCCCcccCChhhCCHhhCCcccEEEec
Confidence            58999999999999998873  44 457888 7766654443224667788865    25668988753

>3slg_A PBGP3 protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid, melioidosis, glanders; 2.10A {Burkholderia pseudomallei}

Probab=87.95  E-value=0.95  Score=30.03  Aligned_cols=63  Identities=14%  Similarity=0.287  Sum_probs=41.5

Q ss_pred             CCeEEEecCCchHHHHHHHHHC---CCCeEEEeeh-HHHHHhCCCCCCeeEEEecCC-CC--CC----cccEEEe
Q 034578           24 IRSMVDVGGGTGTVLAEIVKSY---PHIKGINFDL-QHVIATAPTHEGVSHVGGDMF-DA--IP----NADAVFM   87 (90)
Q Consensus        24 ~~~vlDvG~G~G~~~~~l~~~~---p~~~~~~~D~-p~~~~~a~~~~rv~~~~~d~~-~~--~p----~~D~i~l   87 (90)
                      ..+||=.| |+|.++..++++.   ++.++++++. +.-.+......+++++.+|+. +.  +.    .+|+|+-
T Consensus        24 ~~~vlVtG-atG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~~~~~~~~v~~~~~Dl~~d~~~~~~~~~~~d~Vih   97 (372)
T 3slg_A           24 AKKVLILG-VNGFIGHHLSKRILETTDWEVFGMDMQTDRLGDLVKHERMHFFEGDITINKEWVEYHVKKCDVILP   97 (372)
T ss_dssp             CCEEEEES-CSSHHHHHHHHHHHHHSSCEEEEEESCCTTTGGGGGSTTEEEEECCTTTCHHHHHHHHHHCSEEEE
T ss_pred             CCEEEEEC-CCChHHHHHHHHHHhCCCCEEEEEeCChhhhhhhccCCCeEEEeCccCCCHHHHHHHhccCCEEEE
Confidence            35777665 5777777776654   4678999997 443333233478999999998 52  22    2677763

>3iei_A Leucine carboxyl methyltransferase 1; LCMT-1, S-adenosyl-L-methionine; HET: SAH MES; 1.90A {Homo sapiens} PDB: 3p71_T* 3mnt_A* 3o7w_A*

Probab=87.48  E-value=2.4  Score=28.70  Aligned_cols=55  Identities=16%  Similarity=0.265  Sum_probs=43.1

Q ss_pred             CCCeEEEecCCchHHHHHHHHH-CCCCeEEEeehHHHHHhCC-----------------------------CCCCeeEEE
Q 034578           23 NIRSMVDVGGGTGTVLAEIVKS-YPHIKGINFDLQHVIATAP-----------------------------THEGVSHVG   72 (90)
Q Consensus        23 ~~~~vlDvG~G~G~~~~~l~~~-~p~~~~~~~D~p~~~~~a~-----------------------------~~~rv~~~~   72 (90)
                      +...|+-+|||.=...-.+... .+.+++.-+|+|++++.=+                             ..++.+++.
T Consensus        90 ~~~QVV~LGaGlDTr~~RL~~~~~~~~~~~EVD~P~vi~~K~~~l~~~~~l~~~lg~~~~~~~~~~~~~~l~s~~y~~v~  169 (334)
T 3iei_A           90 CHCQIVNLGAGMDTTFWRLKDEDLLSSKYFEVDFPMIVTRKLHSIKCKPPLSSPILELHSEDTLQMDGHILDSKRYAVIG  169 (334)
T ss_dssp             TCSEEEEETCTTCCHHHHHHHTTCCCSEEEEEECHHHHHHHHHHHHHCHHHHHHHHHHSSSSSCBCCTTEEECSSEEEEE
T ss_pred             CCCEEEEeCCCcCchHHHhcCCCCCCCeEEECCcHHHHHHHHHHHhhchhhhhhhcccccccccccccccCCCCceEEEc
Confidence            4578999999999988888875 3678899999988765311                             146789999


Q ss_pred             ecCCC
Q 034578           73 GDMFD   77 (90)
Q Consensus        73 ~d~~~   77 (90)
                      .|+.+
T Consensus       170 ~DL~d  174 (334)
T 3iei_A          170 ADLRD  174 (334)
T ss_dssp             CCTTC
T ss_pred             ccccc
Confidence            99876

>2aef_A Calcium-gated potassium channel MTHK; rossmann fold, helix-turn-helix, Ca2+ binding, flexible interface; 1.70A {Methanothermobacterthermautotrophicus} PDB: 2aej_A 2aem_A 3rbx_A 2ogu_A 2fy8_A 3kxd_A

Probab=87.39  E-value=2.5  Score=26.38  Aligned_cols=61  Identities=18%  Similarity=0.140  Sum_probs=41.7

Q ss_pred             CCCeEEEecCCchHHHHHHHHHCCC--CeEEEeeh-HHHHHhCCCCCCeeEEEecCCCC-------CCcccEEEee
Q 034578           23 NIRSMVDVGGGTGTVLAEIVKSYPH--IKGINFDL-QHVIATAPTHEGVSHVGGDMFDA-------IPNADAVFMK   88 (90)
Q Consensus        23 ~~~~vlDvG~G~G~~~~~l~~~~p~--~~~~~~D~-p~~~~~a~~~~rv~~~~~d~~~~-------~p~~D~i~l~   88 (90)
                      ...+++=+|+  |.++..+++..-.  . ++++|. |+.++.++  ..+.++.+|..++       +..+|+++..
T Consensus         8 ~~~~viI~G~--G~~G~~la~~L~~~g~-v~vid~~~~~~~~~~--~~~~~i~gd~~~~~~l~~a~i~~ad~vi~~   78 (234)
T 2aef_A            8 KSRHVVICGW--SESTLECLRELRGSEV-FVLAEDENVRKKVLR--SGANFVHGDPTRVSDLEKANVRGARAVIVD   78 (234)
T ss_dssp             --CEEEEESC--CHHHHHHHHHSTTSEE-EEEESCGGGHHHHHH--TTCEEEESCTTCHHHHHHTTCTTCSEEEEC
T ss_pred             CCCEEEEECC--ChHHHHHHHHHHhCCe-EEEEECCHHHHHHHh--cCCeEEEcCCCCHHHHHhcCcchhcEEEEc
Confidence            3467888887  6777777777543  4 888898 77666555  4588899998752       3458888753

>3ggo_A Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-beta, oxidoreductase; HET: NAI ENO; 2.15A {Aquifex aeolicus} PDB: 3ggg_D* 3ggp_A*

Probab=87.30  E-value=1.3  Score=29.48  Aligned_cols=64  Identities=17%  Similarity=0.139  Sum_probs=38.6

Q ss_pred             CeEEEecCCc--hHHHHHHHHHCCCCeEEEeeh-HHHHHhCCCCCCeeEEEecCCC-CCCcccEEEee
Q 034578           25 RSMVDVGGGT--GTVLAEIVKSYPHIKGINFDL-QHVIATAPTHEGVSHVGGDMFD-AIPNADAVFMK   88 (90)
Q Consensus        25 ~~vlDvG~G~--G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~~rv~~~~~d~~~-~~p~~D~i~l~   88 (90)
                      .+|.=||+|.  +.++..+++.....+++++|. ++.++.+++.+-+.-...|..+ .+..+|+|++.
T Consensus        34 ~kI~IIG~G~mG~slA~~l~~~G~~~~V~~~dr~~~~~~~a~~~G~~~~~~~~~~~~~~~~aDvVila  101 (314)
T 3ggo_A           34 QNVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVDLGIIDEGTTSIAKVEDFSPDFVMLS  101 (314)
T ss_dssp             SEEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHTTSCSEEESCTTGGGGGCCSEEEEC
T ss_pred             CEEEEEeeCHHHHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHCCCcchhcCCHHHHhhccCCEEEEe
Confidence            5788999773  345555655543348999998 7776665543322222334433 34558998874

>1f8f_A Benzyl alcohol dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.20A {Acinetobacter calcoaceticus} SCOP: b.35.1.2 c.2.1.1

Probab=87.11  E-value=1.4  Score=29.62  Aligned_cols=44  Identities=20%  Similarity=0.161  Sum_probs=33.7

Q ss_pred             CCCCCeEEEecCCc-hHHHHHHHHHCCCCeEEEeeh-HHHHHhCCC
Q 034578           21 FNNIRSMVDVGGGT-GTVLAEIVKSYPHIKGINFDL-QHVIATAPT   64 (90)
Q Consensus        21 ~~~~~~vlDvG~G~-G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~   64 (90)
                      ..+..+||-+|+|. |.++..+++..-..+++++|. ++-.+.+++
T Consensus       188 ~~~g~~VlV~GaG~vG~~a~qlak~~Ga~~Vi~~~~~~~~~~~a~~  233 (371)
T 1f8f_A          188 VTPASSFVTWGAGAVGLSALLAAKVCGASIIIAVDIVESRLELAKQ  233 (371)
T ss_dssp             CCTTCEEEEESCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHH
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHH
Confidence            55678999999886 889999999864337899997 766666554

>3dfz_A SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase, cobalamin biosynthesis, NAD, oxidoreducta porphyrin biosynthesis; 2.30A {Bacillus megaterium}

Probab=86.91  E-value=1.1  Score=28.68  Aligned_cols=64  Identities=13%  Similarity=-0.008  Sum_probs=38.6

Q ss_pred             CCCeEEEecCCchHHH-HHHHHHCCCCeEEEeeh---HHHHHhCCCCCCeeEEEecCCC-CCCcccEEEee
Q 034578           23 NIRSMVDVGGGTGTVL-AEIVKSYPHIKGINFDL---QHVIATAPTHEGVSHVGGDMFD-AIPNADAVFMK   88 (90)
Q Consensus        23 ~~~~vlDvG~G~G~~~-~~l~~~~p~~~~~~~D~---p~~~~~a~~~~rv~~~~~d~~~-~~p~~D~i~l~   88 (90)
                      ...++|=||+|.=... ...+.+ -++++++++.   +...+.+ +..+++++..+|.. .+..+|+|+..
T Consensus        30 ~gk~VLVVGgG~va~~ka~~Ll~-~GA~VtVvap~~~~~l~~l~-~~~~i~~i~~~~~~~dL~~adLVIaA   98 (223)
T 3dfz_A           30 KGRSVLVVGGGTIATRRIKGFLQ-EGAAITVVAPTVSAEINEWE-AKGQLRVKRKKVGEEDLLNVFFIVVA   98 (223)
T ss_dssp             TTCCEEEECCSHHHHHHHHHHGG-GCCCEEEECSSCCHHHHHHH-HTTSCEEECSCCCGGGSSSCSEEEEC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHH-CCCEEEEECCCCCHHHHHHH-HcCCcEEEECCCCHhHhCCCCEEEEC
Confidence            4578999999843322 222222 2566777763   3333332 24678888887765 46668998864

>3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi}

Probab=86.10  E-value=2.7  Score=22.74  Aligned_cols=61  Identities=21%  Similarity=0.155  Sum_probs=37.6

Q ss_pred             CCeEEEecCCchHHHHHHHH---HCCCCeEEEeeh-HHHHHhCCCCCCeeEEEecCCCC------CCcccEEEe
Q 034578           24 IRSMVDVGGGTGTVLAEIVK---SYPHIKGINFDL-QHVIATAPTHEGVSHVGGDMFDA------IPNADAVFM   87 (90)
Q Consensus        24 ~~~vlDvG~G~G~~~~~l~~---~~p~~~~~~~D~-p~~~~~a~~~~rv~~~~~d~~~~------~p~~D~i~l   87 (90)
                      ..+++=+|+  |.++..+++   +....+++++|. ++-.+..+ ...+.++..|+.+.      +..+|+++.
T Consensus         5 ~~~v~I~G~--G~iG~~~~~~l~~~g~~~v~~~~r~~~~~~~~~-~~~~~~~~~d~~~~~~~~~~~~~~d~vi~   75 (118)
T 3ic5_A            5 RWNICVVGA--GKIGQMIAALLKTSSNYSVTVADHDLAALAVLN-RMGVATKQVDAKDEAGLAKALGGFDAVIS   75 (118)
T ss_dssp             CEEEEEECC--SHHHHHHHHHHHHCSSEEEEEEESCHHHHHHHH-TTTCEEEECCTTCHHHHHHHTTTCSEEEE
T ss_pred             cCeEEEECC--CHHHHHHHHHHHhCCCceEEEEeCCHHHHHHHH-hCCCcEEEecCCCHHHHHHHHcCCCEEEE
Confidence            357888887  444444433   333367899998 65554433 34567788888651      234788775

>3two_A Mannitol dehydrogenase; cinnamyl-alcohol dehydrogenase, NADP(H) oxidoreductase; HET: NDP; 2.18A {Helicobacter pylori}

Probab=85.90  E-value=2.5  Score=28.07  Aligned_cols=43  Identities=14%  Similarity=0.073  Sum_probs=33.1

Q ss_pred             CCCCCeEEEecCCc-hHHHHHHHHHCCCCeEEEeeh-HHHHHhCCC
Q 034578           21 FNNIRSMVDVGGGT-GTVLAEIVKSYPHIKGINFDL-QHVIATAPT   64 (90)
Q Consensus        21 ~~~~~~vlDvG~G~-G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~   64 (90)
                      ..+..+||-+|+|. |.++..+++.. ++++++++. ++-.+.+++
T Consensus       174 ~~~g~~VlV~GaG~vG~~a~qla~~~-Ga~Vi~~~~~~~~~~~~~~  218 (348)
T 3two_A          174 VTKGTKVGVAGFGGLGSMAVKYAVAM-GAEVSVFARNEHKKQDALS  218 (348)
T ss_dssp             CCTTCEEEEESCSHHHHHHHHHHHHT-TCEEEEECSSSTTHHHHHH
T ss_pred             CCCCCEEEEECCcHHHHHHHHHHHHC-CCeEEEEeCCHHHHHHHHh
Confidence            55678899999875 88999999986 569999996 655555544

>2bll_A Protein YFBG; decarboxylase, short chain dehydrogenase, L-ARA4N biosynthes methyltransferase, transferase; 2.3A {Escherichia coli} SCOP: c.2.1.2 PDB: 1u9j_A 1z73_A 1z75_A 1z7b_A 1z74_A

Probab=85.68  E-value=1.3  Score=28.87  Aligned_cols=51  Identities=18%  Similarity=0.256  Sum_probs=34.5

Q ss_pred             eEEEecCCchHHHHHHHHHC---CCCeEEEeeh-HHHHHhCCCCCCeeEEEecCCC
Q 034578           26 SMVDVGGGTGTVLAEIVKSY---PHIKGINFDL-QHVIATAPTHEGVSHVGGDMFD   77 (90)
Q Consensus        26 ~vlDvG~G~G~~~~~l~~~~---p~~~~~~~D~-p~~~~~a~~~~rv~~~~~d~~~   77 (90)
                      +||=. ||+|.++..++++.   ++.++++++. +.-.+......+++++.+|+.+
T Consensus         2 ~vlVt-GatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~D~~~   56 (345)
T 2bll_A            2 RVLIL-GVNGFIGNHLTERLLREDHYEVYGLDIGSDAISRFLNHPHFHFVEGDISI   56 (345)
T ss_dssp             EEEEE-TCSSHHHHHHHHHHHHSTTCEEEEEESCCGGGGGGTTCTTEEEEECCTTT
T ss_pred             eEEEE-CCCcHHHHHHHHHHHHhCCCEEEEEeCCcchHHHhhcCCCeEEEeccccC
Confidence            34544 45788887777654   4678999997 4433333335689999999976

>3dqp_A Oxidoreductase YLBE; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; 1.40A {Lactococcus lactis subsp}

Probab=85.67  E-value=1.3  Score=27.21  Aligned_cols=58  Identities=22%  Similarity=0.169  Sum_probs=39.4

Q ss_pred             eEEEecCCchHHHHHHHHHC--CCCeEEEeeh-HHHHHhCCCCCCeeEEEecCCC-C------CCcccEEEe
Q 034578           26 SMVDVGGGTGTVLAEIVKSY--PHIKGINFDL-QHVIATAPTHEGVSHVGGDMFD-A------IPNADAVFM   87 (90)
Q Consensus        26 ~vlDvG~G~G~~~~~l~~~~--p~~~~~~~D~-p~~~~~a~~~~rv~~~~~d~~~-~------~p~~D~i~l   87 (90)
                      +|+=.| |+|.++..++++.  .+.++++++. +...   .+..+++++.+|+.+ +      +.+.|+++.
T Consensus         2 ~ilItG-atG~iG~~l~~~L~~~g~~V~~~~R~~~~~---~~~~~~~~~~~D~~d~~~~~~~~~~~~d~vi~   69 (219)
T 3dqp_A            2 KIFIVG-STGRVGKSLLKSLSTTDYQIYAGARKVEQV---PQYNNVKAVHFDVDWTPEEMAKQLHGMDAIIN   69 (219)
T ss_dssp             EEEEES-TTSHHHHHHHHHHTTSSCEEEEEESSGGGS---CCCTTEEEEECCTTSCHHHHHTTTTTCSEEEE
T ss_pred             eEEEEC-CCCHHHHHHHHHHHHCCCEEEEEECCccch---hhcCCceEEEecccCCHHHHHHHHcCCCEEEE
Confidence            355444 5788888888775  3468999997 5422   223789999999987 3      233688764

>1kol_A Formaldehyde dehydrogenase; oxidoreductase; HET: NAD; 1.65A {Pseudomonas putida} SCOP: b.35.1.2 c.2.1.1

Probab=85.63  E-value=2.8  Score=28.33  Aligned_cols=44  Identities=20%  Similarity=0.114  Sum_probs=34.2

Q ss_pred             CCCCCeEEEecCCc-hHHHHHHHHHCCCCeEEEeeh-HHHHHhCCC
Q 034578           21 FNNIRSMVDVGGGT-GTVLAEIVKSYPHIKGINFDL-QHVIATAPT   64 (90)
Q Consensus        21 ~~~~~~vlDvG~G~-G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~   64 (90)
                      +.+..+||-+|+|. |.++..+++..-..+++++|. ++-++.+++
T Consensus       183 ~~~g~~VlV~GaG~vG~~aiqlAk~~Ga~~Vi~~~~~~~~~~~a~~  228 (398)
T 1kol_A          183 VGPGSTVYVAGAGPVGLAAAASARLLGAAVVIVGDLNPARLAHAKA  228 (398)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHH
T ss_pred             CCCCCEEEEECCcHHHHHHHHHHHHCCCCeEEEEcCCHHHHHHHHH
Confidence            55668899999875 889999999874447899997 776666654

>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}

Probab=85.31  E-value=1.8  Score=24.97  Aligned_cols=62  Identities=19%  Similarity=0.269  Sum_probs=40.8

Q ss_pred             CCeEEEecCCc-hHHHHHHHHHCCCCeEEEeeh-HHHHHhCCCCCCeeEEEecCCCC-------CCcccEEEe
Q 034578           24 IRSMVDVGGGT-GTVLAEIVKSYPHIKGINFDL-QHVIATAPTHEGVSHVGGDMFDA-------IPNADAVFM   87 (90)
Q Consensus        24 ~~~vlDvG~G~-G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~~rv~~~~~d~~~~-------~p~~D~i~l   87 (90)
                      ..+++=+|+|. |......+++ .+.+++++|. |+.++.+++ ..+.++.+|..++       +..+|+++.
T Consensus         7 ~~~viIiG~G~~G~~la~~L~~-~g~~v~vid~~~~~~~~~~~-~g~~~i~gd~~~~~~l~~a~i~~ad~vi~   77 (140)
T 3fwz_A            7 CNHALLVGYGRVGSLLGEKLLA-SDIPLVVIETSRTRVDELRE-RGVRAVLGNAANEEIMQLAHLECAKWLIL   77 (140)
T ss_dssp             CSCEEEECCSHHHHHHHHHHHH-TTCCEEEEESCHHHHHHHHH-TTCEEEESCTTSHHHHHHTTGGGCSEEEE
T ss_pred             CCCEEEECcCHHHHHHHHHHHH-CCCCEEEEECCHHHHHHHHH-cCCCEEECCCCCHHHHHhcCcccCCEEEE
Confidence            35788899874 4433333333 3568999998 877776554 3567788988762       234788775

>3h2s_A Putative NADH-flavin reductase; Q03B84, NESG, LCR19, structural genomics, PSI-2, protein structure initiative; HET: NDP; 1.78A {Lactobacillus casei atcc 334}

Probab=85.08  E-value=1.9  Score=26.30  Aligned_cols=59  Identities=17%  Similarity=0.099  Sum_probs=37.6

Q ss_pred             EEEecCCchHHHHHHHHHC--CCCeEEEeeh-HHHHHhCCCCCCeeEEEecCCCC----CCcccEEEe
Q 034578           27 MVDVGGGTGTVLAEIVKSY--PHIKGINFDL-QHVIATAPTHEGVSHVGGDMFDA----IPNADAVFM   87 (90)
Q Consensus        27 vlDvG~G~G~~~~~l~~~~--p~~~~~~~D~-p~~~~~a~~~~rv~~~~~d~~~~----~p~~D~i~l   87 (90)
                      ||=.| |+|.++..++++.  .+.++++++. +.-.+.. ...+++++.+|+.++    +...|+++.
T Consensus         3 ilVtG-atG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~-~~~~~~~~~~D~~d~~~~~~~~~d~vi~   68 (224)
T 3h2s_A            3 IAVLG-ATGRAGSAIVAEARRRGHEVLAVVRDPQKAADR-LGATVATLVKEPLVLTEADLDSVDAVVD   68 (224)
T ss_dssp             EEEET-TTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHH-TCTTSEEEECCGGGCCHHHHTTCSEEEE
T ss_pred             EEEEc-CCCHHHHHHHHHHHHCCCEEEEEEecccccccc-cCCCceEEecccccccHhhcccCCEEEE
Confidence            55455 4677666666553  3578999997 5544432 235789999999763    234677764

>2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION transporter, symporter, transport protein; HET: NAI; 2.20A {Bacillus subtilis} SCOP: c.2.1.9 PDB: 2hms_A* 2hmu_A* 2hmv_A* 2hmw_A* 1lsu_A*

Probab=84.95  E-value=3.6  Score=23.06  Aligned_cols=61  Identities=16%  Similarity=0.195  Sum_probs=36.2

Q ss_pred             CeEEEecCCchHHHHHHHHHC--CCCeEEEeeh-HHHHHhCCCCCCeeEEEecCCCC-------CCcccEEEee
Q 034578           25 RSMVDVGGGTGTVLAEIVKSY--PHIKGINFDL-QHVIATAPTHEGVSHVGGDMFDA-------IPNADAVFMK   88 (90)
Q Consensus        25 ~~vlDvG~G~G~~~~~l~~~~--p~~~~~~~D~-p~~~~~a~~~~rv~~~~~d~~~~-------~p~~D~i~l~   88 (90)
                      .+++=+|+  |.++..+++..  .+.+++++|. ++..+..++. ...++.+|..++       +..+|+++..
T Consensus         7 ~~v~I~G~--G~iG~~~a~~l~~~g~~v~~~d~~~~~~~~~~~~-~~~~~~~d~~~~~~l~~~~~~~~d~vi~~   77 (144)
T 2hmt_A            7 KQFAVIGL--GRFGGSIVKELHRMGHEVLAVDINEEKVNAYASY-ATHAVIANATEENELLSLGIRNFEYVIVA   77 (144)
T ss_dssp             CSEEEECC--SHHHHHHHHHHHHTTCCCEEEESCHHHHHTTTTT-CSEEEECCTTCHHHHHTTTGGGCSEEEEC
T ss_pred             CcEEEECC--CHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHh-CCEEEEeCCCCHHHHHhcCCCCCCEEEEC
Confidence            46888886  44444444332  2457888897 7666655543 245667776541       2247887753

>1pl8_A Human sorbitol dehydrogenase; NAD, oxidoreductase; HET: NAD; 1.90A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 1pl7_A 1pl6_A* 3qe3_A

Probab=84.87  E-value=2.9  Score=27.89  Aligned_cols=44  Identities=18%  Similarity=0.192  Sum_probs=33.7

Q ss_pred             CCCCCeEEEecCCc-hHHHHHHHHHCCCCeEEEeeh-HHHHHhCCC
Q 034578           21 FNNIRSMVDVGGGT-GTVLAEIVKSYPHIKGINFDL-QHVIATAPT   64 (90)
Q Consensus        21 ~~~~~~vlDvG~G~-G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~   64 (90)
                      ..+..+||-+|+|. |.++..+++.....+++++|. ++-.+.+++
T Consensus       169 ~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~  214 (356)
T 1pl8_A          169 VTLGHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSATRLSKAKE  214 (356)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHH
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHH
Confidence            45668899999885 889999999874338999997 666665554

>3s2e_A Zinc-containing alcohol dehydrogenase superfamily; FURX, oxidoreductase; HET: NAD; 1.76A {Ralstonia eutropha} PDB: 3s1l_A* 3s2f_A* 3s2g_A* 3s2i_A* 1llu_A* 3meq_A*

Probab=84.83  E-value=3.6  Score=27.14  Aligned_cols=43  Identities=16%  Similarity=0.159  Sum_probs=34.3

Q ss_pred             CCCCCeEEEecCCc-hHHHHHHHHHCCCCeEEEeeh-HHHHHhCCC
Q 034578           21 FNNIRSMVDVGGGT-GTVLAEIVKSYPHIKGINFDL-QHVIATAPT   64 (90)
Q Consensus        21 ~~~~~~vlDvG~G~-G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~   64 (90)
                      ..+..+||-.|+|. |.++..+++.. +++++++|. ++-.+.+++
T Consensus       164 ~~~g~~VlV~GaG~vG~~a~qla~~~-Ga~Vi~~~~~~~~~~~~~~  208 (340)
T 3s2e_A          164 TRPGQWVVISGIGGLGHVAVQYARAM-GLRVAAVDIDDAKLNLARR  208 (340)
T ss_dssp             CCTTSEEEEECCSTTHHHHHHHHHHT-TCEEEEEESCHHHHHHHHH
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHC-CCeEEEEeCCHHHHHHHHH
Confidence            55678899899875 99999999987 569999997 776666654

>4g65_A TRK system potassium uptake protein TRKA; structural genomics, center for structural genomics of infec diseases, csgid, niaid; HET: MSE; 2.09A {Vibrio vulnificus}

Probab=84.36  E-value=1.1  Score=31.45  Aligned_cols=60  Identities=13%  Similarity=0.155  Sum_probs=41.9

Q ss_pred             eEEEecCCchHHHHHHHHHC--CCCeEEEeeh-HHHHHhCCCCCCeeEEEecCCCC-------CCcccEEEe
Q 034578           26 SMVDVGGGTGTVLAEIVKSY--PHIKGINFDL-QHVIATAPTHEGVSHVGGDMFDA-------IPNADAVFM   87 (90)
Q Consensus        26 ~vlDvG~G~G~~~~~l~~~~--p~~~~~~~D~-p~~~~~a~~~~rv~~~~~d~~~~-------~p~~D~i~l   87 (90)
                      +|+=+||  |.++..+++..  .+-.++.+|. |+.++...+.-.+..+.||..++       ...+|+++.
T Consensus         5 ~iiI~G~--G~vG~~la~~L~~~~~~v~vId~d~~~~~~~~~~~~~~~i~Gd~~~~~~L~~Agi~~ad~~ia   74 (461)
T 4g65_A            5 KIIILGA--GQVGGTLAENLVGENNDITIVDKDGDRLRELQDKYDLRVVNGHASHPDVLHEAGAQDADMLVA   74 (461)
T ss_dssp             EEEEECC--SHHHHHHHHHTCSTTEEEEEEESCHHHHHHHHHHSSCEEEESCTTCHHHHHHHTTTTCSEEEE
T ss_pred             EEEEECC--CHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHhcCcEEEEEcCCCHHHHHhcCCCcCCEEEE
Confidence            4555555  67777777765  3567999998 88887765544578889998873       334788764

>1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9

Probab=84.01  E-value=2.9  Score=23.39  Aligned_cols=62  Identities=19%  Similarity=0.185  Sum_probs=36.7

Q ss_pred             CeEEEecCCchHHHHHHHHHC--CCCeEEEeeh-HHHHHhCCCCCCeeEEEecCCCC-------CCcccEEEee
Q 034578           25 RSMVDVGGGTGTVLAEIVKSY--PHIKGINFDL-QHVIATAPTHEGVSHVGGDMFDA-------IPNADAVFMK   88 (90)
Q Consensus        25 ~~vlDvG~G~G~~~~~l~~~~--p~~~~~~~D~-p~~~~~a~~~~rv~~~~~d~~~~-------~p~~D~i~l~   88 (90)
                      .+++=+|+|  .++..+++..  .+.+++++|. ++.++..++...+.++.+|..++       +..+|+++..
T Consensus         5 m~i~IiG~G--~iG~~~a~~L~~~g~~v~~~d~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~~~~d~vi~~   76 (140)
T 1lss_A            5 MYIIIAGIG--RVGYTLAKSLSEKGHDIVLIDIDKDICKKASAEIDALVINGDCTKIKTLEDAGIEDADMYIAV   76 (140)
T ss_dssp             CEEEEECCS--HHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHCSSEEEESCTTSHHHHHHTTTTTCSEEEEC
T ss_pred             CEEEEECCC--HHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHhcCcEEEEcCCCCHHHHHHcCcccCCEEEEe
Confidence            467878774  4444444332  2568999998 66555443322456677776541       3348888764

>3jv7_A ADH-A; dehydrogenase, nucleotide binding, rossmann-fold, oxidoreduc; HET: NAD; 2.00A {Rhodococcus ruber} PDB: 2xaa_A*

Probab=83.23  E-value=3.2  Score=27.48  Aligned_cols=44  Identities=25%  Similarity=0.305  Sum_probs=35.3

Q ss_pred             CCCCCeEEEecCCc-hHHHHHHHHHCCCCeEEEeeh-HHHHHhCCC
Q 034578           21 FNNIRSMVDVGGGT-GTVLAEIVKSYPHIKGINFDL-QHVIATAPT   64 (90)
Q Consensus        21 ~~~~~~vlDvG~G~-G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~   64 (90)
                      ..+..+|+-+|+|. |.++..+++.....+++++|. ++-.+.+++
T Consensus       169 ~~~g~~vlv~GaG~vG~~a~qla~~~g~~~Vi~~~~~~~~~~~~~~  214 (345)
T 3jv7_A          169 LGPGSTAVVIGVGGLGHVGIQILRAVSAARVIAVDLDDDRLALARE  214 (345)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHHCCCEEEEEESCHHHHHHHHH
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHH
Confidence            45678899999875 889999999876789999997 766666654

>1uuf_A YAHK, zinc-type alcohol dehydrogenase-like protein YAHK; oxidoreductase, zinc binding, oxydoreductase, metal-binding; 1.76A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1

Probab=82.51  E-value=3.4  Score=27.84  Aligned_cols=43  Identities=14%  Similarity=0.108  Sum_probs=32.5

Q ss_pred             CCCCCeEEEecCCc-hHHHHHHHHHCCCCeEEEeeh-HHHHHhCCC
Q 034578           21 FNNIRSMVDVGGGT-GTVLAEIVKSYPHIKGINFDL-QHVIATAPT   64 (90)
Q Consensus        21 ~~~~~~vlDvG~G~-G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~   64 (90)
                      ..+..+||-+|+|. |.++..+++.. ++++++++. ++-.+.+++
T Consensus       192 ~~~g~~VlV~GaG~vG~~aiqlak~~-Ga~Vi~~~~~~~~~~~a~~  236 (369)
T 1uuf_A          192 AGPGKKVGVVGIGGLGHMGIKLAHAM-GAHVVAFTTSEAKREAAKA  236 (369)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHT-TCEEEEEESSGGGHHHHHH
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHH
Confidence            55678899999885 88999999876 568899996 655555443

>2h6e_A ADH-4, D-arabinose 1-dehydrogenase; rossman fold, medium chain alcohol dehydrogenase, oxidoreduc; 1.80A {Sulfolobus solfataricus}

Probab=81.96  E-value=2.6  Score=27.89  Aligned_cols=42  Identities=14%  Similarity=0.078  Sum_probs=32.4

Q ss_pred             CCCeEEEecCCc-hHHHHHHHHHC-CCCeEEEeeh-HHHHHhCCC
Q 034578           23 NIRSMVDVGGGT-GTVLAEIVKSY-PHIKGINFDL-QHVIATAPT   64 (90)
Q Consensus        23 ~~~~vlDvG~G~-G~~~~~l~~~~-p~~~~~~~D~-p~~~~~a~~   64 (90)
                      +..+||-+|+|. |.++..+++.. |+++++++|. ++-.+.+++
T Consensus       170 ~g~~VlV~GaG~vG~~aiqlak~~~~Ga~Vi~~~~~~~~~~~~~~  214 (344)
T 2h6e_A          170 AEPVVIVNGIGGLAVYTIQILKALMKNITIVGISRSKKHRDFALE  214 (344)
T ss_dssp             SSCEEEEECCSHHHHHHHHHHHHHCTTCEEEEECSCHHHHHHHHH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHHHHH
Confidence            668999999874 88888888875 5789999996 665555543

>3ius_A Uncharacterized conserved protein; APC63810, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.66A {Ruegeria pomeroyi dss-3}

Probab=81.54  E-value=3.8  Score=25.94  Aligned_cols=60  Identities=7%  Similarity=0.087  Sum_probs=40.4

Q ss_pred             CeEEEecCCchHHHHHHHHHC--CCCeEEEeeh-HHHHHhCCCCCCeeEEEecCCC-CCCcccEEEe
Q 034578           25 RSMVDVGGGTGTVLAEIVKSY--PHIKGINFDL-QHVIATAPTHEGVSHVGGDMFD-AIPNADAVFM   87 (90)
Q Consensus        25 ~~vlDvG~G~G~~~~~l~~~~--p~~~~~~~D~-p~~~~~a~~~~rv~~~~~d~~~-~~p~~D~i~l   87 (90)
                      .+||=.| + |.++..++++.  .+.++++++. +.-.+... ..+++++.+|+.+ .+.++|+|+-
T Consensus         6 ~~ilVtG-a-G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~-~~~~~~~~~D~~d~~~~~~d~vi~   69 (286)
T 3ius_A            6 GTLLSFG-H-GYTARVLSRALAPQGWRIIGTSRNPDQMEAIR-ASGAEPLLWPGEEPSLDGVTHLLI   69 (286)
T ss_dssp             CEEEEET-C-CHHHHHHHHHHGGGTCEEEEEESCGGGHHHHH-HTTEEEEESSSSCCCCTTCCEEEE
T ss_pred             CcEEEEC-C-cHHHHHHHHHHHHCCCEEEEEEcChhhhhhHh-hCCCeEEEecccccccCCCCEEEE
Confidence            5788898 4 88888887764  3568899987 43222111 2568999999876 3344787764

>3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A*

Probab=81.54  E-value=3.5  Score=28.59  Aligned_cols=62  Identities=19%  Similarity=0.252  Sum_probs=41.0

Q ss_pred             CeEEEecCCc-hHHHHHHHHHCCCCeEEEeeh-HHHHHhCCCCCCeeEEEecCCCC-------CCcccEEEee
Q 034578           25 RSMVDVGGGT-GTVLAEIVKSYPHIKGINFDL-QHVIATAPTHEGVSHVGGDMFDA-------IPNADAVFMK   88 (90)
Q Consensus        25 ~~vlDvG~G~-G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~~rv~~~~~d~~~~-------~p~~D~i~l~   88 (90)
                      .+|+=+|+|. |......+++ .+..++++|. |+.++.+++. .+.++.||..++       +..+|+++..
T Consensus         5 ~~viIiG~Gr~G~~va~~L~~-~g~~vvvId~d~~~v~~~~~~-g~~vi~GDat~~~~L~~agi~~A~~viv~   75 (413)
T 3l9w_A            5 MRVIIAGFGRFGQITGRLLLS-SGVKMVVLDHDPDHIETLRKF-GMKVFYGDATRMDLLESAGAAKAEVLINA   75 (413)
T ss_dssp             CSEEEECCSHHHHHHHHHHHH-TTCCEEEEECCHHHHHHHHHT-TCCCEESCTTCHHHHHHTTTTTCSEEEEC
T ss_pred             CeEEEECCCHHHHHHHHHHHH-CCCCEEEEECCHHHHHHHHhC-CCeEEEcCCCCHHHHHhcCCCccCEEEEC
Confidence            4688888863 4444444443 3578999998 8888776643 366788998772       3348887753

>3hyw_A Sulfide-quinone reductase; monotopic membrane protein, flavoprotein, polysulfur, oxidoreductase; HET: FAD DCQ LMT; 2.00A {Aquifex aeolicus} PDB: 3hyv_A* 3hyx_A*

Probab=81.48  E-value=2.3  Score=29.12  Aligned_cols=31  Identities=23%  Similarity=0.392  Sum_probs=25.2

Q ss_pred             CeEEEecCCchHHH--HHHHHHCCCCeEEEeeh
Q 034578           25 RSMVDVGGGTGTVL--AEIVKSYPHIKGINFDL   55 (90)
Q Consensus        25 ~~vlDvG~G~G~~~--~~l~~~~p~~~~~~~D~   55 (90)
                      ++|+=||+|.+.+.  ..|.+..|+.+++.+|.
T Consensus         3 K~VvIIGgG~aGl~aA~~L~~~~~~~~VtlI~~   35 (430)
T 3hyw_A            3 KHVVVIGGGVGGIATAYNLRNLMPDLKITLISD   35 (430)
T ss_dssp             CEEEEECSSHHHHHHHHHHHHHCTTCEEEEECS
T ss_pred             CcEEEECCCHHHHHHHHHHhccCcCCeEEEEcC
Confidence            47999999998754  45777789999999994

>1pqw_A Polyketide synthase; rossmann fold, dimer, structural genomics, PSI, protein STRU initiative; 2.66A {Mycobacterium tuberculosis} SCOP: c.2.1.1

Probab=80.81  E-value=2.7  Score=25.39  Aligned_cols=43  Identities=9%  Similarity=-0.025  Sum_probs=30.9

Q ss_pred             CCCCCeEEEecC--CchHHHHHHHHHCCCCeEEEeeh-HHHHHhCCC
Q 034578           21 FNNIRSMVDVGG--GTGTVLAEIVKSYPHIKGINFDL-QHVIATAPT   64 (90)
Q Consensus        21 ~~~~~~vlDvG~--G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~   64 (90)
                      ..+..+++..|+  |.|.....+++.. +.+++++|. ++..+.+++
T Consensus        36 ~~~g~~vlV~Ga~ggiG~~~~~~~~~~-G~~V~~~~~~~~~~~~~~~   81 (198)
T 1pqw_A           36 LSPGERVLIHSATGGVGMAAVSIAKMI-GARIYTTAGSDAKREMLSR   81 (198)
T ss_dssp             CCTTCEEEETTTTSHHHHHHHHHHHHH-TCEEEEEESSHHHHHHHHT
T ss_pred             CCCCCEEEEeeCCChHHHHHHHHHHHc-CCEEEEEeCCHHHHHHHHH
Confidence            556689999994  6677777777764 468999998 666555544

>3ew7_A LMO0794 protein; Q8Y8U8_lismo, putative NAD-dependent epimerase/dehydratase, LMR162, NESG, structural genomics, PSI-2; 2.73A {Listeria monocytogenes}

Probab=80.50  E-value=2.2  Score=25.80  Aligned_cols=59  Identities=15%  Similarity=0.197  Sum_probs=37.6

Q ss_pred             eEEEecCCchHHHHHHHHHC--CCCeEEEeeh-HHHHHhCCCCCCeeEEEecCCCC----CCcccEEEe
Q 034578           26 SMVDVGGGTGTVLAEIVKSY--PHIKGINFDL-QHVIATAPTHEGVSHVGGDMFDA----IPNADAVFM   87 (90)
Q Consensus        26 ~vlDvG~G~G~~~~~l~~~~--p~~~~~~~D~-p~~~~~a~~~~rv~~~~~d~~~~----~p~~D~i~l   87 (90)
                      +||=.| |+|.++..++++.  .+.++++++. +.-.+...  ++++++.+|+.++    +...|+++.
T Consensus         2 kvlVtG-atG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~--~~~~~~~~D~~d~~~~~~~~~d~vi~   67 (221)
T 3ew7_A            2 KIGIIG-ATGRAGSRILEEAKNRGHEVTAIVRNAGKITQTH--KDINILQKDIFDLTLSDLSDQNVVVD   67 (221)
T ss_dssp             EEEEET-TTSHHHHHHHHHHHHTTCEEEEEESCSHHHHHHC--SSSEEEECCGGGCCHHHHTTCSEEEE
T ss_pred             eEEEEc-CCchhHHHHHHHHHhCCCEEEEEEcCchhhhhcc--CCCeEEeccccChhhhhhcCCCEEEE
Confidence            355455 4666666666553  3578999997 55444333  6789999999763    233677764

>1jvb_A NAD(H)-dependent alcohol dehydrogenase; archaeon, zinc, oxidoreductase; HET: MSE; 1.85A {Sulfolobus solfataricus} SCOP: b.35.1.2 c.2.1.1 PDB: 1r37_A* 1nto_A 1nvg_A 3i4c_A 2eer_A*

Probab=80.37  E-value=4.5  Score=26.81  Aligned_cols=43  Identities=23%  Similarity=0.431  Sum_probs=32.7

Q ss_pred             CCCCCeEEEecCC--chHHHHHHHHHCCCCeEEEeeh-HHHHHhCC
Q 034578           21 FNNIRSMVDVGGG--TGTVLAEIVKSYPHIKGINFDL-QHVIATAP   63 (90)
Q Consensus        21 ~~~~~~vlDvG~G--~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~   63 (90)
                      ..+..++|-.|+|  .|..+..+++..+++++++.|. ++-.+.++
T Consensus       168 ~~~g~~vlV~Gagg~iG~~~~~~a~~~~Ga~Vi~~~~~~~~~~~~~  213 (347)
T 1jvb_A          168 LDPTKTLLVVGAGGGLGTMAVQIAKAVSGATIIGVDVREEAVEAAK  213 (347)
T ss_dssp             CCTTCEEEEETTTSHHHHHHHHHHHHHTCCEEEEEESSHHHHHHHH
T ss_pred             CCCCCEEEEECCCccHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHH
Confidence            5567899999987  6678888888764679999997 66655554

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	90
d1fp1d2	244	c.66.1.12 (D:129-372) Chalcone O-methyltransferase	3e-21
d1fp2a2	244	c.66.1.12 (A:109-352) Isoflavone O-methyltransfera	3e-21
d1kyza2	243	c.66.1.12 (A:120-362) Caffeic acid/5-hydroxyferuli	1e-17
d1qzza2	256	c.66.1.12 (A:102-357) Aclacinomycin-10-hydroxylase	5e-06
d1tw3a2	253	c.66.1.12 (A:99-351) Carminomycin 4-O-methyltransf	2e-05

>d1fp1d2 c.66.1.12 (D:129-372) Chalcone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} Length = 244

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Chalcone O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

 Score = 81.7 bits (201), Expect = 3e-21
 Identities = 42/88 (47%), Positives = 52/88 (59%), Gaps = 2/88 (2%)

Query: 1   MACTTKITMKAFVSHYKVDGFNNIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDLQHVIA 60
           M       MK  +  Y   GF  I ++VDVGGG+G  L  I+  YP IKGINFDL  VI 
Sbjct: 61  MVDVCATEMKRMLEIY--TGFEGISTLVDVGGGSGRNLELIISKYPLIKGINFDLPQVIE 118

Query: 61  TAPTHEGVSHVGGDMFDAIPNADAVFMK 88
            AP   G+ HVGGDMF ++P  DA+ +K
Sbjct: 119 NAPPLSGIEHVGGDMFASVPQGDAMILK 146

>d1fp2a2 c.66.1.12 (A:109-352) Isoflavone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} Length = 244

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Isoflavone O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

 Score = 81.7 bits (201), Expect = 3e-21
 Identities = 36/88 (40%), Positives = 50/88 (56%), Gaps = 2/88 (2%)

Query: 1   MACTTKITMKAFVSHYKVDGFNNIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDLQHVIA 60
           MA  +K+   A      V     + S+VDVGGGTGT    I +++P +K I FD   V+ 
Sbjct: 60  MASDSKLINLALRDCDFVFD--GLESIVDVGGGTGTTAKIICETFPKLKCIVFDRPQVVE 117

Query: 61  TAPTHEGVSHVGGDMFDAIPNADAVFMK 88
                  +++VGGDMF +IPNADAV +K
Sbjct: 118 NLSGSNNLTYVGGDMFTSIPNADAVLLK 145

>d1kyza2 c.66.1.12 (A:120-362) Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} Length = 243

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

 Score = 72.6 bits (177), Expect = 1e-17
 Identities = 53/88 (60%), Positives = 63/88 (71%), Gaps = 2/88 (2%)

Query: 1   MACTTKITMKAFVSHYKVDGFNNIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDLQHVIA 60
           M+  + ITMK  +  Y   GF  ++S+VDVGGGTG V+  IV  YP IKGINFDL HVI 
Sbjct: 61  MSDHSTITMKKILETY--TGFEGLKSLVDVGGGTGAVINTIVSKYPTIKGINFDLPHVIE 118

Query: 61  TAPTHEGVSHVGGDMFDAIPNADAVFMK 88
            AP++ GV HVGGDMF +IP ADAVFMK
Sbjct: 119 DAPSYPGVEHVGGDMFVSIPKADAVFMK 146

>d1qzza2 c.66.1.12 (A:102-357) Aclacinomycin-10-hydroxylase RdmB {Streptomyces purpurascens [TaxId: 1924]} Length = 256

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Aclacinomycin-10-hydroxylase RdmB
species: Streptomyces purpurascens [TaxId: 1924]

 Score = 40.7 bits (94), Expect = 5e-06
 Identities = 19/65 (29%), Positives = 31/65 (47%), Gaps = 3/65 (4%)

Query: 1   MACTTKITMKAFVSHYKVDGFNNIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDLQHVIA 60
           M+C   +  +A    Y    ++ +R ++DVGGG G +LA I    PH++G   +L     
Sbjct: 62  MSCDEDLAYEAPADAYD---WSAVRHVLDVGGGNGGMLAAIALRAPHLRGTLVELAGPAE 118

Query: 61  TAPTH 65
            A   
Sbjct: 119 RARRR 123

>d1tw3a2 c.66.1.12 (A:99-351) Carminomycin 4-O-methyltransferase {Streptomyces peucetius [TaxId: 1950]} Length = 253

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Carminomycin 4-O-methyltransferase
species: Streptomyces peucetius [TaxId: 1950]

 Score = 38.5 bits (88), Expect = 2e-05
 Identities = 18/65 (27%), Positives = 32/65 (49%), Gaps = 3/65 (4%)

Query: 1   MACTTKITMKAFVSHYKVDGFNNIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDLQHVIA 60
           +AC   +   A  + Y    + N+R ++DVGGG G   A I +  PH+     ++   + 
Sbjct: 61  LACDQDVAFDAPAAAYD---WTNVRHVLDVGGGKGGFAAAIARRAPHVSATVLEMAGTVD 117

Query: 61  TAPTH 65
           TA ++
Sbjct: 118 TARSY 122

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	90
d1fp1d2	244	Chalcone O-methyltransferase {Alfalfa (Medicago sa	99.88
d1fp2a2	244	Isoflavone O-methyltransferase {Alfalfa (Medicago	99.85
d1kyza2	243	Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltra	99.85
d1qzza2	256	Aclacinomycin-10-hydroxylase RdmB {Streptomyces pu	99.84
d1tw3a2	253	Carminomycin 4-O-methyltransferase {Streptomyces p	99.83
d2b3ta1	274	N5-glutamine methyltransferase, HemK {Escherichia	99.6
d1nkva_	245	Hypothetical Protein YjhP {Escherichia coli [TaxId	99.58
d2o57a1	282	Putative sarcosine dimethylglycine methyltransfera	99.57
d1vl5a_	231	Hypothetical protein BH2331 {Bacillus halodurans [	99.55
d1xxla_	234	Hypothetical protein YcgJ {Bacillus subtilis [TaxI	99.55
d1p91a_	268	rRNA methyltransferase RlmA {Escherichia coli [Tax	99.51
d1wzna1	251	Hypothetical methyltransferase PH1305 {Archaeon Py	99.48
d2gh1a1	281	Methyltransferase BC2162 {Bacillus cereus [TaxId:	99.48
d1im8a_	225	Hypothetical protein HI0319 (YecO) {Haemophilus in	99.48
d1dusa_	194	Hypothetical protein MJ0882 {Archaeon Methanococcu	99.47
d1l3ia_	186	Precorrin-6Y methyltransferase (CbiT) {Archaeon Me	99.46
d1ve3a1	226	Hypothetical protein PH0226 {Archaeon Pyrococcus h	99.43
d2ex4a1	222	Adrenal gland protein AD-003 (C9orf32) {Human (Hom	99.42
d1xtpa_	254	Hypothetical protein Lmaj004091aaa (LmjF30.0810) {	99.41
d2i6ga1	198	Putative methyltransferase TehB {Salmonella typhim	99.41
d2p7ia1	225	Hypothetical protein ECA1738 {Erwinia carotovora [	99.4
d1y8ca_	246	Putative methyltransferase CAC2371 {Clostridium ac	99.36
d1nw3a_	328	Catalytic, N-terminal domain of histone methyltran	99.35
d1pjza_	201	Thiopurine S-methyltransferase {Pseudomonas syring	99.35
d2avna1	246	Hypothetical methyltransferase TM1389 {Thermotoga	99.33
d1i9ga_	264	Probable methyltransferase Rv2118c {Mycobacterium	99.32
d1yb2a1	250	Hypothetical protein Ta0852 {Thermoplasma acidophi	99.31
d1dl5a1	213	Protein-L-isoaspartyl O-methyltransferase {Thermot	99.31
d2nxca1	254	PrmA-like protein TTHA0656 (TT0836) {Thermus therm	99.29
d1ne2a_	197	Hypothetical protein Ta1320 {Archaeon Thermoplasma	99.28
d2fk8a1	280	Methoxy mycolic acid synthase 4, Mma4 {Mycobacteri	99.26
d1ri5a_	252	mRNA cap (Guanine N-7) methyltransferase {Fungus (	99.25
d1g8sa_	230	Fibrillarin homologue {Archaeon Methanococcus jann	99.22
d1nv8a_	271	N5-glutamine methyltransferase, HemK {Thermotoga m	99.22
d1kpia_	291	CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]}	99.21
d1kpga_	285	CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]}	99.2
d1vlma_	208	Possible histamine N-methyltransferase TM1293 {The	99.2
d1i1na_	224	Protein-L-isoaspartyl O-methyltransferase {Human (	99.2
d1zx0a1	229	Guanidinoacetate methyltransferase {Human (Homo sa	99.19
d2bzga1	229	Thiopurine S-methyltransferase {Human (Homo sapien	99.19
d2fcaa1	204	tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacil	99.18
d1yzha1	204	tRNA (guanine-N(7)-)-methyltransferase TrmB {Strep	99.17
d1nt2a_	209	Fibrillarin homologue {Archaeon Archaeoglobus fulg	99.17
d2h00a1	250	Methyltransferase 10 domain containing protein MET	99.17
d1vbfa_	224	Protein-L-isoaspartyl O-methyltransferase {Sulfolo	99.17
d1o54a_	266	Hypothetical protein TM0748 {Thermotoga maritima [	99.16
d1wy7a1	201	Hypothetical protein PH1948 {Archaeon Pyrococcus h	99.16
d1u2za_	406	Catalytic, N-terminal domain of histone methyltran	99.12
d2b25a1	324	Hypothetical protein FLJ20628 {Human (Homo sapiens	99.09
d2fyta1	311	Protein arginine N-methyltransferase 3, PRMT3 {Hum	99.09
d2esra1	152	Putative methyltransferase SPy1538 {Streptococcus	99.07
d1m6ya2	192	TM0872, methyltransferase domain {Thermotoga marit	99.07
d1g6q1_	328	Arginine methyltransferase, HMT1 {Baker's yeast (S	99.06
d1jg1a_	215	Protein-L-isoaspartyl O-methyltransferase {Archaeo	99.05
d1oria_	316	Protein arginine N-methyltransferase 1, PRMT1 {Rat	99.03
d1r18a_	223	Protein-L-isoaspartyl O-methyltransferase {Fruit f	99.02
d2frna1	260	Hypothetical protein PH0793 {Pyrococcus horikoshii	99.02
d1xvaa_	292	Glycine N-methyltransferase {Rat (Rattus norvegicu	98.98
d1qama_	235	rRNA adenine dimethylase {Bacillus subtilis, Ermc'	98.98
d1g8aa_	227	Fibrillarin homologue {Archaeon Pyrococcus horikos	98.95
d1jqea_	280	Histamine methyltransferase {Human (Homo sapiens)	98.9
d1yuba_	245	rRNA adenine dimethylase {Streptococcus pneumoniae	98.88
d1ws6a1	171	Methyltransferase TTHA0928 {Thermus thermophilus [	98.76
d2fpoa1	183	Methylase YhhF {Escherichia coli [TaxId: 562]}	98.75
d1uira_	312	Spermidine synthase {Thermus thermophilus [TaxId:	98.72
d2as0a2	324	Hypothetical protein PH1915, middle and C-terminal	98.68
d2igta1	309	Putative methyltransferase Atu0340 {Agrobacterium	98.66
d1iy9a_	274	Spermidine synthase {Bacillus subtilis [TaxId: 142	98.66
d1inla_	295	Spermidine synthase {Thermotoga maritima [TaxId: 2	98.63
d2o07a1	285	Spermidine synthase {Human (Homo sapiens) [TaxId:	98.62
d2fhpa1	182	Putative methylase EF2452 {Enterococcus faecalis [	98.6
d2cl5a1	214	Catechol O-methyltransferase, COMT {Rat (Rattus no	98.54
d2f8la1	328	Hypothetical protein Lmo1582 {Listeria monocytogen	98.53
d2b2ca1	312	Spermidine synthase {Caenorhabditis elegans [TaxId	98.52
d1xj5a_	290	Spermidine synthase {Thale cress (Arabidopsis thal	98.52
d1uwva2	358	rRNA (Uracil-5-)-methyltransferase RumA, catalytic	98.5
d1zq9a1	278	Probable dimethyladenosine transferase {Human (Hom	98.49
d2ih2a1	223	DNA methylase TaqI, N-terminal domain {Thermus aqu	98.49
d1mjfa_	276	Putative spermidine synthetase PF0127 (SpeE) {Arch	98.48
d1wxxa2	318	Hypothetical protein TTHA1280, middle and C-termin	98.44
d2b78a2	317	Hypothetical protein SMu776, middle and C-terminal	98.42
d1qyra_	252	High level kasugamycin resistance protein KsgA {Es	98.35
d2avda1	219	COMT domain-containing protein 1, COMTD1 {Human (H	98.34
d2a14a1	257	Indolethylamine N-methyltransferase, INMT {Human (	98.34
d1wg8a2	182	TM0872, methyltransferase domain {Thermus thermoph	98.18
d1susa1	227	Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicag	98.13
d2g72a1	263	Phenylethanolamine N-methyltransferase, PNMTase {H	98.07
d1jsxa_	207	Glucose-inhibited division protein B (GidB) {Esche	98.05
d1af7a2	193	Chemotaxis receptor methyltransferase CheR, C-term	98.04
d2ifta1	183	Putative methylase HI0767 {Haemophilus influenzae	97.93
d1ej0a_	180	RNA methyltransferase FtsJ {Escherichia coli [TaxI	97.87
d1i4wa_	322	Transcription factor sc-mtTFB {Baker's yeast (Sacc	97.79
d2okca1	425	Type I restriction enzyme StySJI M protein {Bacter	97.66
d2p41a1	257	An RNA cap (nucleoside-2'-O-)-methyltransferase do	97.46
d1xdza_	239	Glucose-inhibited division protein B (GidB) {Bacil	96.94
d2bm8a1	232	Cephalosporin hydroxylase CmcI {Streptomyces clavu	96.78
d2oyra1	250	Hypothetical protein YhiQ {Shigella flexneri [TaxI	96.48
d2b9ea1	293	NOL1R {Human (Homo sapiens) [TaxId: 9606]}	96.41
d2ar0a1	524	M.EcoKI {Escherichia coli [TaxId: 562]}	96.25
d2g5ca2	171	Prephenate dehydrogenase TyrA {Aquifex aeolicus [T	96.19
d1sqga2	284	Ribosomal RNA small subunit methyltransferase B, R	96.19
d2dula1	375	N(2),N(2)-dimethylguanosine tRNA methyltransferase	96.11
d1zkda1	365	Hypothetical protein RPA4359 {Rhodopseudomonas pal	95.93
d1ixka_	313	Hypothetical methyltransferase PH1374 {Archaeon Py	95.66
d1kola2	195	Formaldehyde dehydrogenase {Pseudomonas putida [Ta	95.39
d1lssa_	132	Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax	94.48
d1booa_	320	m.PvuII N4 cytosine-specific DNA methyltransferase	93.63
d2hmva1	134	Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}	92.99
d2f1ka2	165	Prephenate dehydrogenase TyrA {Synechocystis sp. p	92.77
d1vj0a2	182	Hypothetical protein TM0436 {Thermotoga maritima [	92.75
d1e3ia2	174	Alcohol dehydrogenase {Mouse (Mus musculus), class	92.55
d1dcta_	324	DNA methylase HaeIII {Haemophilus aegyptius [TaxId	92.52
d2fy8a1	129	Potassium channel-related protein MthK {Archaeon M	92.04
d1e3ja2	170	Ketose reductase (sorbitol dehydrogenase) {Silverl	91.92
d1piwa2	168	Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas	91.91
d1d1ta2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	91.88
d1g60a_	256	Methyltransferase mboII {Moraxella bovis [TaxId: 4	91.63
d2blla1	342	Polymyxin resistance protein ArnA (PrmI) {Escheric	91.28
d1j6ua1	89	UDP-N-acetylmuramate-alanine ligase MurC {Thermoto	91.09
d1rjda_	328	Leucine carboxy methyltransferase Ppm1 {Baker's ye	91.01
d2py6a1	395	Methyltransferase FkbM {Methylobacillus flagellatu	90.48
d1jqba2	174	Bacterial secondary alcohol dehydrogenase {Clostri	90.16
d1pl8a2	171	Ketose reductase (sorbitol dehydrogenase) {Human (	89.71
d1p3da1	96	UDP-N-acetylmuramate-alanine ligase MurC {Haemophi	89.32
d1eg2a_	279	m.RsrI N6 adenosine-specific DNA methyltransferase	89.28
d1o9ga_	249	rRNA methyltransferase AviRa {Streptomyces viridoc	88.53
d1pjqa1	113	Siroheme synthase CysG, domain 1 {Salmonella typhi	88.48
d2jfga1	93	UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase	88.04
d1f8fa2	174	Benzyl alcohol dehydrogenase {Acinetobacter calcoa	87.62
d1llua2	166	Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax	87.21
d1orra_	338	CDP-tyvelose-2-epimerase {Salmonella typhi [TaxId:	87.01
d1fcda1	186	Flavocytochrome c sulfide dehydrogenase, FCSD, fla	86.72
d1cdoa2	175	Alcohol dehydrogenase {Cod (Gadus callarias) [TaxI	86.48
d1p0fa2	174	Alcohol dehydrogenase {Frog (Rana perezi) [TaxId:	86.46
d1id1a_	153	Rck domain from putative potassium channel Kch {Es	85.54
d1ulsa_	242	beta-keto acyl carrier protein reductase {Thermus	85.54
d1jvba2	170	Alcohol dehydrogenase {Archaeon Sulfolobus solfata	85.15
d1seza1	373	Protoporphyrinogen oxidase {Tobacco (Nicotiana tab	84.56
d1yb5a2	174	Quinone oxidoreductase {Human (Homo sapiens) [TaxI	83.78
d2iida1	370	L-aminoacid oxidase {Malayan pit viper (Calloselas	82.98
d1pjca1	168	L-alanine dehydrogenase {Phormidium lapideum [TaxI	82.29
d2voua1	265	Dihydroxypyridine hydroxylase DhpH {Arthrobacter n	82.26
d2uyoa1	297	Putative methyltransferase ML2640 {Mycobacterium l	81.81
d1oc2a_	346	dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus	81.34
d1rkxa_	356	CDP-glucose-4,6-dehydratase {Yersinia pseudotuberc	81.26
d2bgka1	268	Rhizome secoisolariciresinol dehydrogenase {Mayapp	81.18
d2fzwa2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	80.87
d1bg6a2	184	N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {A	80.85
d1ps9a3	179	2,4-dienoyl-CoA reductase, middle domain {Escheric	80.65

>d1fp1d2 c.66.1.12 (D:129-372) Chalcone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Chalcone O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=99.88  E-value=7.3e-23  Score=133.16  Aligned_cols=88  Identities=47%  Similarity=0.832  Sum_probs=81.9

Q ss_pred             CCcchhhhHHHHHhhcccCCCCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeehHHHHHhCCCCCCeeEEEecCCCCCC
Q 034578            1 MACTTKITMKAFVSHYKVDGFNNIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDLQHVIATAPTHEGVSHVGGDMFDAIP   80 (90)
Q Consensus         1 m~~~~~~~~~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~p~~~~~a~~~~rv~~~~~d~~~~~p   80 (90)
                      |++.+...++.+++.++.  +++..+|||||||+|.++.++++++|+++++++|+|++++.+...+|++++.+||++++|
T Consensus        61 M~~~s~~~~~~l~~~~~~--f~~~~~vlDiGGG~G~~~~~l~~~~P~l~~~v~Dlp~vi~~~~~~~ri~~~~gd~~~~~p  138 (244)
T d1fp1d2          61 MVDVCATEMKRMLEIYTG--FEGISTLVDVGGGSGRNLELIISKYPLIKGINFDLPQVIENAPPLSGIEHVGGDMFASVP  138 (244)
T ss_dssp             HHHHHHHHHHHHHHHCCT--TTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHTTCCCCTTEEEEECCTTTCCC
T ss_pred             HHHHHHHHHHHHHHhccc--ccCCcEEEEecCCCcHHHHHHHHHCCCCeEEEecchhhhhccCCCCCeEEecCCcccccc
Confidence            566778888999999984  788899999999999999999999999999999999999998889999999999999999


Q ss_pred             cccEEEeecC
Q 034578           81 NADAVFMKVA   90 (90)
Q Consensus        81 ~~D~i~l~~v   90 (90)
                      .+|+|++++|
T Consensus       139 ~~D~~~l~~v  148 (244)
T d1fp1d2         139 QGDAMILKAV  148 (244)
T ss_dssp             CEEEEEEESS
T ss_pred             cceEEEEehh
Confidence            9999999986

>d1fp2a2 c.66.1.12 (A:109-352) Isoflavone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Isoflavone O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=99.85  E-value=9.3e-22  Score=127.87  Aligned_cols=88  Identities=41%  Similarity=0.642  Sum_probs=75.6

Q ss_pred             CCcchhhhHHHHHhhcccCCCCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeehHHHHHhCCCCCCeeEEEecCCCCCC
Q 034578            1 MACTTKITMKAFVSHYKVDGFNNIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDLQHVIATAPTHEGVSHVGGDMFDAIP   80 (90)
Q Consensus         1 m~~~~~~~~~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~p~~~~~a~~~~rv~~~~~d~~~~~p   80 (90)
                      |+..+......+.+...  .+++..+|||||||+|.++.++++++|+++++++|+|++++.+...+|++++.+||++++|
T Consensus        60 M~~~s~~~~~~~~~~~~--~~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dlp~vi~~~~~~~rv~~~~gD~f~~~p  137 (244)
T d1fp2a2          60 MASDSKLINLALRDCDF--VFDGLESIVDVGGGTGTTAKIICETFPKLKCIVFDRPQVVENLSGSNNLTYVGGDMFTSIP  137 (244)
T ss_dssp             HHHTHHHHHHHHHTCHH--HHTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHTTCCCBTTEEEEECCTTTCCC
T ss_pred             hhhhhhhhhhhHhhhcc--cccCceEEEEecCCccHHHHHHHHhCCCCeEEEecCHHHHHhCcccCceEEEecCcccCCC
Confidence            34455555666655322  1677889999999999999999999999999999999999999889999999999999888


Q ss_pred             cccEEEeecC
Q 034578           81 NADAVFMKVA   90 (90)
Q Consensus        81 ~~D~i~l~~v   90 (90)
                      .+|+|++++|
T Consensus       138 ~aD~~~l~~v  147 (244)
T d1fp2a2         138 NADAVLLKYI  147 (244)
T ss_dssp             CCSEEEEESC
T ss_pred             CCcEEEEEee
Confidence            8999999986

>d1kyza2 c.66.1.12 (A:120-362) Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=99.85  E-value=8e-22  Score=127.87  Aligned_cols=88  Identities=59%  Similarity=0.967  Sum_probs=80.4

Q ss_pred             CCcchhhhHHHHHhhcccCCCCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeehHHHHHhCCCCCCeeEEEecCCCCCC
Q 034578            1 MACTTKITMKAFVSHYKVDGFNNIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDLQHVIATAPTHEGVSHVGGDMFDAIP   80 (90)
Q Consensus         1 m~~~~~~~~~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~p~~~~~a~~~~rv~~~~~d~~~~~p   80 (90)
                      |+..+...+..+++.+++  +++..+|||||||+|.++.++++++|+++++++|+|++++.++..+|++++.+||++++|
T Consensus        61 M~~~~~~~~~~~~~~~~~--~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dlp~vi~~~~~~~r~~~~~~d~~~~~P  138 (243)
T d1kyza2          61 MSDHSTITMKKILETYTG--FEGLKSLVDVGGGTGAVINTIVSKYPTIKGINFDLPHVIEDAPSYPGVEHVGGDMFVSIP  138 (243)
T ss_dssp             HHHHHHHHHHHHHHHCCT--TSSCSEEEEETCTTSHHHHHHHHHCTTSEEEEEECTTTTTTCCCCTTEEEEECCTTTCCC
T ss_pred             HhHhhhhHHHHHHHhccc--ccCCcEEEEecCCCcHHHHHHHHHCCCCeEEEcccHHhhhhcccCCceEEecccccccCC
Confidence            456677788899999985  566789999999999999999999999999999999999999999999999999999999


Q ss_pred             cccEEEeecC
Q 034578           81 NADAVFMKVA   90 (90)
Q Consensus        81 ~~D~i~l~~v   90 (90)
                      .+|+|++++|
T Consensus       139 ~ad~~~l~~v  148 (243)
T d1kyza2         139 KADAVFMKWI  148 (243)
T ss_dssp             CCSCEECSSS
T ss_pred             CcceEEEEEE
Confidence            9999999886

>d1qzza2 c.66.1.12 (A:102-357) Aclacinomycin-10-hydroxylase RdmB {Streptomyces purpurascens [TaxId: 1924]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Aclacinomycin-10-hydroxylase RdmB
species: Streptomyces purpurascens [TaxId: 1924]

Probab=99.84  E-value=4.3e-21  Score=125.07  Aligned_cols=87  Identities=31%  Similarity=0.608  Sum_probs=78.6

Q ss_pred             CCcchhhhHHHHHhhcccCCCCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeehHHHHHhCCC-------CCCeeEEEe
Q 034578            1 MACTTKITMKAFVSHYKVDGFNNIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDLQHVIATAPT-------HEGVSHVGG   73 (90)
Q Consensus         1 m~~~~~~~~~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~p~~~~~a~~-------~~rv~~~~~   73 (90)
                      |+..+...++.+++.++   |++.++|||||||+|.++..+++++|+++++++|+|++++.+++       .+|++++.+
T Consensus        62 m~~~~~~~~~~~~~~~d---~~~~~~vlDvG~G~G~~~~~l~~~~P~~~~~~~Dlp~~~~~a~~~~~~~~~~~ri~~~~~  138 (256)
T d1qzza2          62 MSCDEDLAYEAPADAYD---WSAVRHVLDVGGGNGGMLAAIALRAPHLRGTLVELAGPAERARRRFADAGLADRVTVAEG  138 (256)
T ss_dssp             CGGGSTTTTHHHHHTSC---CTTCCEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHHHHHHHHHHTTCTTTEEEEEC
T ss_pred             HHhhHHHHHHHHHhcCC---CccCCEEEEECCCCCHHHHHHHHhhcCcEEEEecChHHHHHHHHHHhhcCCcceeeeeee
Confidence            67778888999999999   78889999999999999999999999999999999988877654       489999999


Q ss_pred             cCCCCCCc-ccEEEeecC
Q 034578           74 DMFDAIPN-ADAVFMKVA   90 (90)
Q Consensus        74 d~~~~~p~-~D~i~l~~v   90 (90)
                      |+++++|. +|+|++++|
T Consensus       139 d~~~~~p~~~D~v~~~~v  156 (256)
T d1qzza2         139 DFFKPLPVTADVVLLSFV  156 (256)
T ss_dssp             CTTSCCSCCEEEEEEESC
T ss_pred             eccccccccchhhhcccc
Confidence            99998775 999999876

>d1tw3a2 c.66.1.12 (A:99-351) Carminomycin 4-O-methyltransferase {Streptomyces peucetius [TaxId: 1950]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Carminomycin 4-O-methyltransferase
species: Streptomyces peucetius [TaxId: 1950]

Probab=99.83  E-value=7e-21  Score=123.51  Aligned_cols=87  Identities=31%  Similarity=0.665  Sum_probs=77.6

Q ss_pred             CCcchhhhHHHHHhhcccCCCCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeehHHHHHhCCC-------CCCeeEEEe
Q 034578            1 MACTTKITMKAFVSHYKVDGFNNIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDLQHVIATAPT-------HEGVSHVGG   73 (90)
Q Consensus         1 m~~~~~~~~~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~p~~~~~a~~-------~~rv~~~~~   73 (90)
                      |+..++..++.+++.++   +++..+|||||||+|.++..+++++|+++++++|+|++++.+++       .+|++++.+
T Consensus        61 m~~~~~~~~~~~~~~~d---~~~~~~VLDvGcG~G~~~~~la~~~p~~~~~~~D~~~~~~~a~~~~~~~~~~~rv~~~~~  137 (253)
T d1tw3a2          61 LACDQDVAFDAPAAAYD---WTNVRHVLDVGGGKGGFAAAIARRAPHVSATVLEMAGTVDTARSYLKDEGLSDRVDVVEG  137 (253)
T ss_dssp             HTTTTTTTTHHHHHHSC---CTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECTTHHHHHHHHHHHTTCTTTEEEEEC
T ss_pred             HHHhHHHHHHHHHhhcC---CccCCEEEEeCCCCCHHHHHHHHhcceeEEEEccCHHHHHHHHHHHHHhhcccchhhccc
Confidence            56778888899999999   78889999999999999999999999999999999888887764       378999999


Q ss_pred             cCCCCCCc-ccEEEeecC
Q 034578           74 DMFDAIPN-ADAVFMKVA   90 (90)
Q Consensus        74 d~~~~~p~-~D~i~l~~v   90 (90)
                      |++++.|. +|+|+++++
T Consensus       138 D~~~~~~~~~D~v~~~~v  155 (253)
T d1tw3a2         138 DFFEPLPRKADAIILSFV  155 (253)
T ss_dssp             CTTSCCSSCEEEEEEESC
T ss_pred             cchhhcccchhheeeccc
Confidence            99987665 999999875

>d2b3ta1 c.66.1.30 (A:2-275) N5-glutamine methyltransferase, HemK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N5-glutamine methyltransferase, HemK
domain: N5-glutamine methyltransferase, HemK
species: Escherichia coli [TaxId: 562]

Probab=99.60  E-value=8e-16  Score=101.13  Aligned_cols=82  Identities=16%  Similarity=0.282  Sum_probs=70.0

Q ss_pred             cchhhhHHHHHhhcccCCCCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeeh-HHHHHhCCCC------CCeeEEEecC
Q 034578            3 CTTKITMKAFVSHYKVDGFNNIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDL-QHVIATAPTH------EGVSHVGGDM   75 (90)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~------~rv~~~~~d~   75 (90)
                      ..++.+++.+++...    ....+|||+|||+|++++.+++++|+++++++|+ +.+++.|+++      .|++++.+|+
T Consensus        92 peTE~lv~~~l~~~~----~~~~~vlDlGtGSG~I~i~la~~~p~~~v~avDis~~Al~~A~~Na~~~~~~~v~~~~~d~  167 (274)
T d2b3ta1          92 PDTECLVEQALARLP----EQPCRILDLGTGTGAIALALASERPDCEIIAVDRMPDAVSLAQRNAQHLAIKNIHILQSDW  167 (274)
T ss_dssp             TTHHHHHHHHHHHSC----SSCCEEEEETCTTSHHHHHHHHHCTTSEEEEECSSHHHHHHHHHHHHHHTCCSEEEECCST
T ss_pred             cchhhhhhhHhhhhc----ccccceeeeehhhhHHHHHHHhhCCcceeeeccchhHHHhHHHHHHHHhCcccceeeeccc
Confidence            346677888877665    3457899999999999999999999999999999 9999999873      5899999999


Q ss_pred             CCCCCc--ccEEEee
Q 034578           76 FDAIPN--ADAVFMK   88 (90)
Q Consensus        76 ~~~~p~--~D~i~l~   88 (90)
                      +++++.  +|+|+.+
T Consensus       168 ~~~~~~~~fDlIvsN  182 (274)
T d2b3ta1         168 FSALAGQQFAMIVSN  182 (274)
T ss_dssp             TGGGTTCCEEEEEEC
T ss_pred             ccccCCCceeEEEec
Confidence            997663  9999875

>d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical Protein YjhP
domain: Hypothetical Protein YjhP
species: Escherichia coli [TaxId: 562]

Probab=99.58  E-value=5.4e-15  Score=94.60  Aligned_cols=81  Identities=20%  Similarity=0.271  Sum_probs=66.5

Q ss_pred             hhhhHHHHHhhcccCCCCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeeh-HHHHHhCCC-------CCCeeEEEecCC
Q 034578            5 TKITMKAFVSHYKVDGFNNIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDL-QHVIATAPT-------HEGVSHVGGDMF   76 (90)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~-------~~rv~~~~~d~~   76 (90)
                      +......+++.+.   +.+..+|||||||+|.++..++++++ .+++++|+ |.+++.|++       .+|++|..+|+.
T Consensus        18 ~~~~~~~l~~~~~---l~pg~~VLDiGCG~G~~~~~la~~~~-~~v~GvD~s~~~~~~ar~~~~~~gl~~~v~~~~~d~~   93 (245)
T d1nkva_          18 TEEKYATLGRVLR---MKPGTRILDLGSGSGEMLCTWARDHG-ITGTGIDMSSLFTAQAKRRAEELGVSERVHFIHNDAA   93 (245)
T ss_dssp             CHHHHHHHHHHTC---CCTTCEEEEETCTTCHHHHHHHHHTC-CEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCCT
T ss_pred             CHHHHHHHHHHcC---CCCCCEEEEEcCCCCHHHHHHHHhcC-CEEEEEecccchhhHHHHHHHHhhccccchhhhhHHh
Confidence            3445666777777   77788999999999999999998876 79999999 999988765       368999999998


Q ss_pred             CCCCc--ccEEEeec
Q 034578           77 DAIPN--ADAVFMKV   89 (90)
Q Consensus        77 ~~~p~--~D~i~l~~   89 (90)
                      +..+.  +|+|++..
T Consensus        94 ~~~~~~~fD~v~~~~  108 (245)
T d1nkva_          94 GYVANEKCDVAACVG  108 (245)
T ss_dssp             TCCCSSCEEEEEEES
T ss_pred             hccccCceeEEEEEe
Confidence            84443  99998764

>d2o57a1 c.66.1.18 (A:16-297) Putative sarcosine dimethylglycine methyltransferase {Red algae (Galdieria sulphuraria) [TaxId: 130081]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: Putative sarcosine dimethylglycine methyltransferase
species: Red algae (Galdieria sulphuraria) [TaxId: 130081]

Probab=99.57  E-value=4.2e-15  Score=96.89  Aligned_cols=78  Identities=9%  Similarity=0.140  Sum_probs=63.6

Q ss_pred             hHHHHHhhcccCCCCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeeh-HHHHHhCCC-------CCCeeEEEecCCC-C
Q 034578            8 TMKAFVSHYKVDGFNNIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDL-QHVIATAPT-------HEGVSHVGGDMFD-A   78 (90)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~-------~~rv~~~~~d~~~-~   78 (90)
                      +++.+....+   +++..+|||||||+|.++..+++++ +.+++++|+ |.+++.|++       .++++++.+|+.+ +
T Consensus        55 ~~~~l~~~~~---l~~~~~vLDiGcG~G~~~~~la~~~-~~~v~gvD~s~~~i~~a~~~~~~~gl~~~v~~~~~d~~~l~  130 (282)
T d2o57a1          55 LASELAMTGV---LQRQAKGLDLGAGYGGAARFLVRKF-GVSIDCLNIAPVQNKRNEEYNNQAGLADNITVKYGSFLEIP  130 (282)
T ss_dssp             HHHHHHHTTC---CCTTCEEEEETCTTSHHHHHHHHHH-CCEEEEEESCHHHHHHHHHHHHHHTCTTTEEEEECCTTSCS
T ss_pred             HHHHHHHhcC---CCCCCEEEEeCCCCcHHHhhhhccC-CcEEEEEeccchhhhhhhccccccccccccccccccccccc
Confidence            4444444445   6778999999999999999999875 578999999 999988875       3689999999988 6


Q ss_pred             CCc--ccEEEeec
Q 034578           79 IPN--ADAVFMKV   89 (90)
Q Consensus        79 ~p~--~D~i~l~~   89 (90)
                      +|.  +|+|++..
T Consensus       131 ~~~~sfD~V~~~~  143 (282)
T d2o57a1         131 CEDNSYDFIWSQD  143 (282)
T ss_dssp             SCTTCEEEEEEES
T ss_pred             ccccccchhhccc
Confidence            663  99998864

>d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus halodurans [TaxId: 86665]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein BH2331
species: Bacillus halodurans [TaxId: 86665]

Probab=99.55  E-value=7.4e-15  Score=92.59  Aligned_cols=76  Identities=22%  Similarity=0.326  Sum_probs=62.3

Q ss_pred             HHHHhhcccCCCCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeeh-HHHHHhCCC------CCCeeEEEecCCC-CCCc
Q 034578           10 KAFVSHYKVDGFNNIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDL-QHVIATAPT------HEGVSHVGGDMFD-AIPN   81 (90)
Q Consensus        10 ~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~------~~rv~~~~~d~~~-~~p~   81 (90)
                      ..+++..+   +.+..+|||||||+|.++..++++.  .+++++|+ +.+++.|++      .++++|+.+|+.+ +++.
T Consensus         5 ~~ll~~~~---l~~~~rVLDiGcG~G~~~~~l~~~~--~~v~gvD~s~~~i~~A~~~~~~~~~~~i~~~~~d~~~l~~~~   79 (231)
T d1vl5a_           5 AKLMQIAA---LKGNEEVLDVATGGGHVANAFAPFV--KKVVAFDLTEDILKVARAFIEGNGHQQVEYVQGDAEQMPFTD   79 (231)
T ss_dssp             HHHHHHHT---CCSCCEEEEETCTTCHHHHHHGGGS--SEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCC-CCCSCT
T ss_pred             HHHHHhcC---CCCcCEEEEecccCcHHHHHHHHhC--CEEEEEECCHHHHhhhhhcccccccccccccccccccccccc
Confidence            45666666   7778999999999999999999886  47899999 999998864      3789999999987 6653


Q ss_pred             --ccEEEeecC
Q 034578           82 --ADAVFMKVA   90 (90)
Q Consensus        82 --~D~i~l~~v   90 (90)
                        ||+|++.++
T Consensus        80 ~~fD~v~~~~~   90 (231)
T d1vl5a_          80 ERFHIVTCRIA   90 (231)
T ss_dssp             TCEEEEEEESC
T ss_pred             ccccccccccc
Confidence              999998753

>d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein YcgJ
species: Bacillus subtilis [TaxId: 1423]

Probab=99.55  E-value=1e-14  Score=92.69  Aligned_cols=77  Identities=17%  Similarity=0.282  Sum_probs=64.3

Q ss_pred             HHHHHhhcccCCCCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeeh-HHHHHhCCC------CCCeeEEEecCCC-CCC
Q 034578            9 MKAFVSHYKVDGFNNIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDL-QHVIATAPT------HEGVSHVGGDMFD-AIP   80 (90)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~------~~rv~~~~~d~~~-~~p   80 (90)
                      .+.+++..+   +++..+|||||||+|.++..++++.  .+++++|+ +.+++.|++      .+++.++.+|..+ +++
T Consensus         5 ~~~l~~~~~---~~~~~rILDiGcGtG~~~~~la~~~--~~v~gvD~S~~~l~~A~~~~~~~~~~~~~~~~~d~~~~~~~   79 (234)
T d1xxla_           5 LGLMIKTAE---CRAEHRVLDIGAGAGHTALAFSPYV--QECIGVDATKEMVEVASSFAQEKGVENVRFQQGTAESLPFP   79 (234)
T ss_dssp             HHHHHHHHT---CCTTCEEEEESCTTSHHHHHHGGGS--SEEEEEESCHHHHHHHHHHHHHHTCCSEEEEECBTTBCCSC
T ss_pred             HHHHHHHhC---CCCCCEEEEeCCcCcHHHHHHHHhC--CeEEEEeCChhhhhhhhhhhccccccccccccccccccccc
Confidence            345667777   7888999999999999999999986  57899999 999998865      2689999999987 565


Q ss_pred             c--ccEEEeecC
Q 034578           81 N--ADAVFMKVA   90 (90)
Q Consensus        81 ~--~D~i~l~~v   90 (90)
                      .  +|+|++..+
T Consensus        80 ~~~fD~v~~~~~   91 (234)
T d1xxla_          80 DDSFDIITCRYA   91 (234)
T ss_dssp             TTCEEEEEEESC
T ss_pred             ccccceeeeece
Confidence            4  899998753

>d1p91a_ c.66.1.33 (A:) rRNA methyltransferase RlmA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA methyltransferase RlmA
domain: rRNA methyltransferase RlmA
species: Escherichia coli [TaxId: 562]

Probab=99.51  E-value=2.3e-14  Score=93.20  Aligned_cols=68  Identities=18%  Similarity=0.313  Sum_probs=59.9

Q ss_pred             CCCCeEEEecCCchHHHHHHHHHCCCCeEEEeeh-HHHHHhCCC-CCCeeEEEecCCC-CCCc--ccEEEeec
Q 034578           22 NNIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDL-QHVIATAPT-HEGVSHVGGDMFD-AIPN--ADAVFMKV   89 (90)
Q Consensus        22 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~-~~rv~~~~~d~~~-~~p~--~D~i~l~~   89 (90)
                      .+..+|||||||+|.++..+++.+|+.+++++|+ +.+++.|++ .+++++..+|..+ +++.  +|+|+..+
T Consensus        83 ~~~~~iLDiGcG~G~~~~~l~~~~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~d~~~l~~~~~sfD~v~~~~  155 (268)
T d1p91a_          83 DKATAVLDIGCGEGYYTHAFADALPEITTFGLDVSKVAIKAAAKRYPQVTFCVASSHRLPFSDTSMDAIIRIY  155 (268)
T ss_dssp             TTCCEEEEETCTTSTTHHHHHHTCTTSEEEEEESCHHHHHHHHHHCTTSEEEECCTTSCSBCTTCEEEEEEES
T ss_pred             CCCCEEEEeCCCCcHHHHHHHHHCCCCEEEEecchHhhhhhhhcccccccceeeehhhccCCCCCEEEEeecC
Confidence            3568999999999999999999999999999999 999999876 5789999999987 6554  89998654

>d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Hypothetical methyltransferase PH1305
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.48  E-value=5.5e-14  Score=89.45  Aligned_cols=74  Identities=23%  Similarity=0.357  Sum_probs=60.3

Q ss_pred             HHHHhhcccCCCCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeeh-HHHHHhCCC-----CCCeeEEEecCCC-CCCc-
Q 034578           10 KAFVSHYKVDGFNNIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDL-QHVIATAPT-----HEGVSHVGGDMFD-AIPN-   81 (90)
Q Consensus        10 ~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~-----~~rv~~~~~d~~~-~~p~-   81 (90)
                      ..+++.+.   ..+..+|||||||+|.++..++++.  .+++++|+ |.|++.|++     +.++++..+|+.+ ++++ 
T Consensus        31 ~~~~~~~~---~~~~~~iLDiGcGtG~~~~~l~~~~--~~v~gvD~s~~mi~~a~~~~~~~~~~i~~~~~d~~~l~~~~~  105 (251)
T d1wzna1          31 EEIFKEDA---KREVRRVLDLACGTGIPTLELAERG--YEVVGLDLHEEMLRVARRKAKERNLKIEFLQGDVLEIAFKNE  105 (251)
T ss_dssp             HHHHHHTC---SSCCCEEEEETCTTCHHHHHHHHTT--CEEEEEESCHHHHHHHHHHHHHTTCCCEEEESCGGGCCCCSC
T ss_pred             HHHHHHhc---CCCCCEEEEeCCCCCccchhhcccc--eEEEEEeeccccccccccccccccccchheehhhhhcccccc
Confidence            44455555   4567899999999999999999974  57999999 999999876     3579999999977 6665 


Q ss_pred             ccEEEee
Q 034578           82 ADAVFMK   88 (90)
Q Consensus        82 ~D~i~l~   88 (90)
                      +|+|++.
T Consensus       106 fD~I~~~  112 (251)
T d1wzna1         106 FDAVTMF  112 (251)
T ss_dssp             EEEEEEC
T ss_pred             cchHhhh
Confidence            9999874

>d2gh1a1 c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bacillus cereus [TaxId: 1396]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: BC2162-like
domain: Methyltransferase BC2162
species: Bacillus cereus [TaxId: 1396]

Probab=99.48  E-value=7.1e-14  Score=91.37  Aligned_cols=80  Identities=18%  Similarity=0.196  Sum_probs=64.9

Q ss_pred             HHHHHhhcccCCCCCCCeEEEecCCchHHHHHHHHHCCC-CeEEEeeh-HHHHHhCCC-----CCCeeEEEecCCC-CCC
Q 034578            9 MKAFVSHYKVDGFNNIRSMVDVGGGTGTVLAEIVKSYPH-IKGINFDL-QHVIATAPT-----HEGVSHVGGDMFD-AIP   80 (90)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~-~~~~~~D~-p~~~~~a~~-----~~rv~~~~~d~~~-~~p   80 (90)
                      .+.+++.+..  +.++.+|||+|||+|.++..+++.+|. .+++++|+ |.+++.|++     ..+++|..+|+.+ +++
T Consensus        15 l~~l~~~~~~--~~~~~~ILDiGcG~G~~~~~la~~~~~~~~v~giD~s~~~l~~a~~~~~~~~~~~~f~~~d~~~~~~~   92 (281)
T d2gh1a1          15 VSFLVNTVWK--ITKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLLPYDSEFLEGDATEIELN   92 (281)
T ss_dssp             HHHHHHTTSC--CCSCCEEEEETCTTTHHHHHHTTTSCTTCEEEEEECCHHHHHHHHHHHHSSSSEEEEEESCTTTCCCS
T ss_pred             HHHHHHHHhc--cCCcCEEEEecCcCCHHHHHHHHhCCCCCEEEEEecchhHhhhhhccccccccccccccccccccccc
Confidence            4555555532  567889999999999999999999874 78999999 999998875     2478999999987 555


Q ss_pred             c-ccEEEeecC
Q 034578           81 N-ADAVFMKVA   90 (90)
Q Consensus        81 ~-~D~i~l~~v   90 (90)
                      + +|+|+++++
T Consensus        93 ~~fD~v~~~~~  103 (281)
T d2gh1a1          93 DKYDIAICHAF  103 (281)
T ss_dssp             SCEEEEEEESC
T ss_pred             CCceEEEEehh
Confidence            5 999998864

>d1im8a_ c.66.1.14 (A:) Hypothetical protein HI0319 (YecO) {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical protein HI0319 (YecO)
domain: Hypothetical protein HI0319 (YecO)
species: Haemophilus influenzae [TaxId: 727]

Probab=99.48  E-value=5e-14  Score=89.04  Aligned_cols=68  Identities=21%  Similarity=0.276  Sum_probs=57.0

Q ss_pred             CCCCeEEEecCCchHHHHHHHHH--CCCCeEEEeeh-HHHHHhCCC-------CCCeeEEEecCCC-CCCcccEEEeec
Q 034578           22 NNIRSMVDVGGGTGTVLAEIVKS--YPHIKGINFDL-QHVIATAPT-------HEGVSHVGGDMFD-AIPNADAVFMKV   89 (90)
Q Consensus        22 ~~~~~vlDvG~G~G~~~~~l~~~--~p~~~~~~~D~-p~~~~~a~~-------~~rv~~~~~d~~~-~~p~~D~i~l~~   89 (90)
                      .+..+|||||||+|.++..+++.  .|+++++++|+ |.|++.|++       ..++++..+|+.+ +.+.+|++++..
T Consensus        38 ~~~~~vLDlGCGtG~~~~~l~~~~~~~~~~v~giD~S~~ml~~A~~~~~~~~~~~~~~~~~~d~~~~~~~~~d~i~~~~  116 (225)
T d1im8a_          38 TADSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHVEIKNASMVILNF  116 (225)
T ss_dssp             CTTCEEEEESCTTCHHHHHHHHTCCCSSCEEEEECSCHHHHHHHHHHHHTSCCSSCEEEECSCTTTCCCCSEEEEEEES
T ss_pred             CCCCEEEEeccchhhHHHHHHHhhcCCCCceEEeCCCHHHHHHHHHHhHhhcccchhhhccchhhccccccceeeEEee
Confidence            35679999999999999999987  48999999999 999999875       3578888888877 445589988865

>d1dusa_ c.66.1.4 (A:) Hypothetical protein MJ0882 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical protein MJ0882
domain: Hypothetical protein MJ0882
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.47  E-value=1e-13  Score=86.24  Aligned_cols=74  Identities=15%  Similarity=0.297  Sum_probs=60.9

Q ss_pred             HHHHhhcccCCCCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeeh-HHHHHhCCC--------CCCeeEEEecCCCCCC
Q 034578           10 KAFVSHYKVDGFNNIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDL-QHVIATAPT--------HEGVSHVGGDMFDAIP   80 (90)
Q Consensus        10 ~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~--------~~rv~~~~~d~~~~~p   80 (90)
                      +.+++.++   ..+..+|||+|||+|.++..+++..|  +++++|+ |.+++.+++        ..++++..+|++++++
T Consensus        42 ~lLi~~l~---~~~~~~VLDiGcG~G~~~~~la~~~~--~v~~iD~s~~~i~~a~~n~~~~~l~~~~i~~~~~d~~~~~~  116 (194)
T d1dusa_          42 KILVENVV---VDKDDDILDLGCGYGVIGIALADEVK--STTMADINRRAIKLAKENIKLNNLDNYDIRVVHSDLYENVK  116 (194)
T ss_dssp             HHHHHHCC---CCTTCEEEEETCTTSHHHHHHGGGSS--EEEEEESCHHHHHHHHHHHHHTTCTTSCEEEEECSTTTTCT
T ss_pred             HHHHHhCC---cCCCCeEEEEeecCChhHHHHHhhcc--ccceeeeccccchhHHHHHHHhCCccceEEEEEcchhhhhc
Confidence            44666676   55678999999999999999999876  5788898 999988864        3579999999998665


Q ss_pred             c--ccEEEee
Q 034578           81 N--ADAVFMK   88 (90)
Q Consensus        81 ~--~D~i~l~   88 (90)
                      +  +|+|+++
T Consensus       117 ~~~fD~Ii~~  126 (194)
T d1dusa_         117 DRKYNKIITN  126 (194)
T ss_dssp             TSCEEEEEEC
T ss_pred             cCCceEEEEc
Confidence            3  9999985

>d1l3ia_ c.66.1.22 (A:) Precorrin-6Y methyltransferase (CbiT) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Precorrin-6Y methyltransferase (CbiT)
domain: Precorrin-6Y methyltransferase (CbiT)
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=99.46  E-value=4.6e-14  Score=87.36  Aligned_cols=78  Identities=23%  Similarity=0.247  Sum_probs=63.2

Q ss_pred             hhhHHHHHhhcccCCCCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeeh-HHHHHhCCC-------CCCeeEEEecCCC
Q 034578            6 KITMKAFVSHYKVDGFNNIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDL-QHVIATAPT-------HEGVSHVGGDMFD   77 (90)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~-------~~rv~~~~~d~~~   77 (90)
                      +.+...++..+.   ..+..+|||+|||+|.++..+++..  .+++++|+ |.+++.|++       .+|++++.+|+.+
T Consensus        19 ~eir~~il~~l~---~~~g~~VLDiGcGsG~~s~~lA~~~--~~V~avD~~~~~l~~a~~n~~~~gl~~~v~~~~gda~~   93 (186)
T d1l3ia_          19 MEVRCLIMCLAE---PGKNDVAVDVGCGTGGVTLELAGRV--RRVYAIDRNPEAISTTEMNLQRHGLGDNVTLMEGDAPE   93 (186)
T ss_dssp             HHHHHHHHHHHC---CCTTCEEEEESCTTSHHHHHHHTTS--SEEEEEESCHHHHHHHHHHHHHTTCCTTEEEEESCHHH
T ss_pred             HHHHHHHHHhcC---CCCCCEEEEEECCeEcccccccccc--eEEEEecCCHHHHHHHHHHHHHcCCCcceEEEECchhh
Confidence            344566677776   6778999999999999999998865  47999999 999999876       2699999999876


Q ss_pred             ---CCCcccEEEee
Q 034578           78 ---AIPNADAVFMK   88 (90)
Q Consensus        78 ---~~p~~D~i~l~   88 (90)
                         +.+.+|++++.
T Consensus        94 ~~~~~~~~D~v~~~  107 (186)
T d1l3ia_          94 ALCKIPDIDIAVVG  107 (186)
T ss_dssp             HHTTSCCEEEEEES
T ss_pred             cccccCCcCEEEEe
Confidence               23459999875

>d1ve3a1 c.66.1.43 (A:2-227) Hypothetical protein PH0226 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Hypothetical protein PH0226
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.43  E-value=3e-13  Score=84.39  Aligned_cols=67  Identities=16%  Similarity=0.234  Sum_probs=55.9

Q ss_pred             CCCCeEEEecCCchHHHHHHHHHCCCCeEEEeeh-HHHHHhCCC-----CCCeeEEEecCCC-CCCc--ccEEEeecC
Q 034578           22 NNIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDL-QHVIATAPT-----HEGVSHVGGDMFD-AIPN--ADAVFMKVA   90 (90)
Q Consensus        22 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~-----~~rv~~~~~d~~~-~~p~--~D~i~l~~v   90 (90)
                      ++..+|||||||+|.++..+++.  +.+++++|+ +.+++.|++     ..++.++.+|..+ +++.  +|+|++..+
T Consensus        36 ~~~~~ILDiGcG~G~~~~~la~~--~~~v~giD~S~~~i~~ak~~~~~~~~~~~~~~~d~~~l~~~~~~fD~I~~~~~  111 (226)
T d1ve3a1          36 KKRGKVLDLACGVGGFSFLLEDY--GFEVVGVDISEDMIRKAREYAKSRESNVEFIVGDARKLSFEDKTFDYVIFIDS  111 (226)
T ss_dssp             CSCCEEEEETCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHTTCCCEEEECCTTSCCSCTTCEEEEEEESC
T ss_pred             CCCCEEEEECCCcchhhhhHhhh--hcccccccccccchhhhhhhhccccccccccccccccccccCcCceEEEEecc
Confidence            35679999999999999999985  578999999 999998875     3568889999987 5553  999998754

>d2ex4a1 c.66.1.42 (A:2-224) Adrenal gland protein AD-003 (C9orf32) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: AD-003 protein-like
domain: Adrenal gland protein AD-003 (C9orf32)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.42  E-value=7.4e-14  Score=88.16  Aligned_cols=69  Identities=13%  Similarity=0.174  Sum_probs=56.3

Q ss_pred             CCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeeh-HHHHHhCCC------CCCeeEEEecCCC-CCC-c-ccEEEeecC
Q 034578           21 FNNIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDL-QHVIATAPT------HEGVSHVGGDMFD-AIP-N-ADAVFMKVA   90 (90)
Q Consensus        21 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~------~~rv~~~~~d~~~-~~p-~-~D~i~l~~v   90 (90)
                      ..+..+|||||||+|.++..+++..+ .+++++|+ +.|++.|++      ..+++|+.+|+.+ +++ + +|+|++..+
T Consensus        58 ~~~~~~vLDiGcG~G~~~~~l~~~~~-~~v~~vD~s~~~l~~ak~~~~~~~~~~~~f~~~d~~~~~~~~~~fD~I~~~~~  136 (222)
T d2ex4a1          58 KTGTSCALDCGAGIGRITKRLLLPLF-REVDMVDITEDFLVQAKTYLGEEGKRVRNYFCCGLQDFTPEPDSYDVIWIQWV  136 (222)
T ss_dssp             CCCCSEEEEETCTTTHHHHHTTTTTC-SEEEEEESCHHHHHHHHHHTGGGGGGEEEEEECCGGGCCCCSSCEEEEEEESC
T ss_pred             CCCCCEEEEeccCCCHhhHHHHHhcC-CEEEEeecCHHHhhccccccccccccccccccccccccccccccccccccccc
Confidence            34567999999999999999987765 47999999 999998875      2568999999987 443 3 999998754

>d1xtpa_ c.66.1.42 (A:) Hypothetical protein Lmaj004091aaa (LmjF30.0810) {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: AD-003 protein-like
domain: Hypothetical protein Lmaj004091aaa (LmjF30.0810)
species: Leishmania major [TaxId: 5664]

Probab=99.41  E-value=2.2e-13  Score=88.05  Aligned_cols=77  Identities=14%  Similarity=0.251  Sum_probs=62.0

Q ss_pred             HHHHhhcccCCCCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeeh-HHHHHhCCC----CCCeeEEEecCCC-CCC-c-
Q 034578           10 KAFVSHYKVDGFNNIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDL-QHVIATAPT----HEGVSHVGGDMFD-AIP-N-   81 (90)
Q Consensus        10 ~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~----~~rv~~~~~d~~~-~~p-~-   81 (90)
                      ..+++.++   ..+..++||+|||+|.++..++.++.+ +++++|. +.+++.|++    .++++++.+|+.+ +++ . 
T Consensus        83 ~~fl~~l~---~~~~~~vLD~GcG~G~~t~~ll~~~~~-~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~d~~~~~~~~~~  158 (254)
T d1xtpa_          83 RNFIASLP---GHGTSRALDCGAGIGRITKNLLTKLYA-TTDLLEPVKHMLEEAKRELAGMPVGKFILASMETATLPPNT  158 (254)
T ss_dssp             HHHHHTST---TCCCSEEEEETCTTTHHHHHTHHHHCS-EEEEEESCHHHHHHHHHHTTTSSEEEEEESCGGGCCCCSSC
T ss_pred             HHHHhhCC---CCCCCeEEEecccCChhhHHHHhhcCc-eEEEEcCCHHHHHhhhccccccccceeEEccccccccCCCc
Confidence            45566666   456789999999999999999887654 7899999 999998875    3668999999976 444 3 


Q ss_pred             ccEEEeecC
Q 034578           82 ADAVFMKVA   90 (90)
Q Consensus        82 ~D~i~l~~v   90 (90)
                      ||+|++.++
T Consensus       159 fD~I~~~~v  167 (254)
T d1xtpa_         159 YDLIVIQWT  167 (254)
T ss_dssp             EEEEEEESC
T ss_pred             cceEEeecc
Confidence            999998764

>d2i6ga1 c.66.1.44 (A:1-198) Putative methyltransferase TehB {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TehB-like
domain: Putative methyltransferase TehB
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.41  E-value=5.6e-13  Score=82.75  Aligned_cols=75  Identities=13%  Similarity=0.102  Sum_probs=58.8

Q ss_pred             HHHhhcccCCCCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeeh-HHHHHhCCC------CCCeeEEEecCCC-CCCc-
Q 034578           11 AFVSHYKVDGFNNIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDL-QHVIATAPT------HEGVSHVGGDMFD-AIPN-   81 (90)
Q Consensus        11 ~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~------~~rv~~~~~d~~~-~~p~-   81 (90)
                      .+++...   +..+.+|||||||+|..+..++++.  .+++++|+ +.+++.+++      -+++++...|+.+ ..+. 
T Consensus        21 ~~~~~~~---~~~~grvLDiGcG~G~~~~~la~~g--~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~   95 (198)
T d2i6ga1          21 DVLAAAK---VVAPGRTLDLGCGNGRNSLYLAANG--YDVTAWDKNPASMANLERIKAAEGLDNLQTDLVDLNTLTFDGE   95 (198)
T ss_dssp             HHHHHHT---TSCSCEEEEETCTTSHHHHHHHHTT--CEEEEEESCHHHHHHHHHHHHHTTCTTEEEEECCTTTCCCCCC
T ss_pred             HHHHHcc---cCCCCcEEEECCCCCHHHHHHHHHh--hhhccccCcHHHHHHHHHHhhhccccchhhhheeccccccccc
Confidence            3444444   3356799999999999999999984  57999999 999987764      2679999999987 4444 


Q ss_pred             ccEEEeecC
Q 034578           82 ADAVFMKVA   90 (90)
Q Consensus        82 ~D~i~l~~v   90 (90)
                      ||+|++..+
T Consensus        96 fD~I~~~~~  104 (198)
T d2i6ga1          96 YDFILSTVV  104 (198)
T ss_dssp             EEEEEEESC
T ss_pred             ccEEEEeee
Confidence            999998653

>d2p7ia1 c.66.1.41 (A:22-246) Hypothetical protein ECA1738 {Erwinia carotovora [TaxId: 554]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein ECA1738
species: Erwinia carotovora [TaxId: 554]

Probab=99.40  E-value=2.4e-13  Score=85.97  Aligned_cols=68  Identities=13%  Similarity=0.299  Sum_probs=56.3

Q ss_pred             CCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeeh-HHHHHhCCC--CCCeeEEEecCCC-CCCc-ccEEEeecC
Q 034578           21 FNNIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDL-QHVIATAPT--HEGVSHVGGDMFD-AIPN-ADAVFMKVA   90 (90)
Q Consensus        21 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~--~~rv~~~~~d~~~-~~p~-~D~i~l~~v   90 (90)
                      +.+..+|||||||+|.++..++++.  .+++++|+ |.+++.|++  ..+++++.+|+.+ ++++ +|+|++.++
T Consensus        18 ~~~~~~VLDiGcG~G~~~~~l~~~g--~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~fD~I~~~~v   90 (225)
T d2p7ia1          18 FFRPGNLLELGSFKGDFTSRLQEHF--NDITCVEASEEAISHAQGRLKDGITYIHSRFEDAQLPRRYDNIVLTHV   90 (225)
T ss_dssp             GCCSSCEEEESCTTSHHHHHHTTTC--SCEEEEESCHHHHHHHHHHSCSCEEEEESCGGGCCCSSCEEEEEEESC
T ss_pred             hCCCCcEEEEeCCCcHHHHHHHHcC--CeEEEEeCcHHHhhhhhcccccccccccccccccccccccccccccce
Confidence            3356789999999999999998875  46999999 999999875  4679999999876 4444 999998764

>d1y8ca_ c.66.1.43 (A:) Putative methyltransferase CAC2371 {Clostridium acetobutylicum [TaxId: 1488]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Putative methyltransferase CAC2371
species: Clostridium acetobutylicum [TaxId: 1488]

Probab=99.36  E-value=1.9e-13  Score=87.12  Aligned_cols=63  Identities=17%  Similarity=0.238  Sum_probs=53.6

Q ss_pred             CCCeEEEecCCchHHHHHHHHHCCCCeEEEeeh-HHHHHhCCC-----CCCeeEEEecCCC-CCCc-ccEEEe
Q 034578           23 NIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDL-QHVIATAPT-----HEGVSHVGGDMFD-AIPN-ADAVFM   87 (90)
Q Consensus        23 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~-----~~rv~~~~~d~~~-~~p~-~D~i~l   87 (90)
                      ++.+|||||||+|.++..++++.  .+++++|+ +.|++.|++     ..+++++.+|+.+ ++++ +|+|++
T Consensus        37 ~~~~vLDiGCG~G~~~~~l~~~g--~~v~GvD~S~~ml~~A~~~~~~~~~~v~~~~~d~~~~~~~~~fD~i~~  107 (246)
T d1y8ca_          37 VFDDYLDLACGTGNLTENLCPKF--KNTWAVDLSQEMLSEAENKFRSQGLKPRLACQDISNLNINRKFDLITC  107 (246)
T ss_dssp             CTTEEEEETCTTSTTHHHHGGGS--SEEEEECSCHHHHHHHHHHHHHTTCCCEEECCCGGGCCCSCCEEEEEE
T ss_pred             CCCeEEEEeCcCCHHHHHHHHhC--CccEeeccchhhhhhccccccccCccceeeccchhhhcccccccccce
Confidence            45789999999999999999985  47899999 999998875     3579999999987 4554 999885

>d1nw3a_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Catalytic, N-terminal domain of histone methyltransferase Dot1l
domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.35  E-value=9.6e-13  Score=87.81  Aligned_cols=83  Identities=18%  Similarity=0.261  Sum_probs=67.6

Q ss_pred             chhhhHHHHHhhcccCCCCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeeh-HHHHHhCCC---------------CCC
Q 034578            4 TTKITMKAFVSHYKVDGFNNIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDL-QHVIATAPT---------------HEG   67 (90)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~---------------~~r   67 (90)
                      .+......+++.+.   +.+..+|||+|||+|.++..+++.++..+++|+|+ |.+++.|++               ..+
T Consensus       135 ~~~~~~~~~~~~~~---l~~~~~vlD~GcG~G~~~~~~a~~~~~~~~~Gid~s~~~~~~a~~~~~~~~~~~~~~g~~~~~  211 (328)
T d1nw3a_         135 TSFDLVAQMIDEIK---MTDDDLFVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAETMDREFRKWMKWYGKKHAE  211 (328)
T ss_dssp             CCHHHHHHHHHHSC---CCTTCEEEEETCTTSHHHHHHHHHCCCSEEEEEECSHHHHHHHHHHHHHHHHHHHHHTCCCCC
T ss_pred             hHHHHHHHHHHHcC---CCCCCEEEEcCCCCCHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHhhhccccCCc
Confidence            34455677888877   77788999999999999999999999999999999 998887753               367


Q ss_pred             eeEEEecCCC-CCC----cccEEEeec
Q 034578           68 VSHVGGDMFD-AIP----NADAVFMKV   89 (90)
Q Consensus        68 v~~~~~d~~~-~~p----~~D~i~l~~   89 (90)
                      ++|+.+|+.+ ++.    .+|+|++++
T Consensus       212 i~~~~gd~~~~~~~~~~~~advi~~~~  238 (328)
T d1nw3a_         212 YTLERGDFLSEEWRERIANTSVIFVNN  238 (328)
T ss_dssp             EEEEECCTTSHHHHHHHHHCSEEEECC
T ss_pred             eEEEECcccccccccccCcceEEEEcc
Confidence            9999999987 332    268888754

>d1pjza_ c.66.1.36 (A:) Thiopurine S-methyltransferase {Pseudomonas syringae [TaxId: 317]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Thiopurine S-methyltransferase
domain: Thiopurine S-methyltransferase
species: Pseudomonas syringae [TaxId: 317]

Probab=99.35  E-value=1.2e-12  Score=79.87  Aligned_cols=67  Identities=12%  Similarity=0.106  Sum_probs=54.9

Q ss_pred             CCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeeh-HHHHHhCCC------------------CCCeeEEEecCCCCCC-
Q 034578           21 FNNIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDL-QHVIATAPT------------------HEGVSHVGGDMFDAIP-   80 (90)
Q Consensus        21 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~------------------~~rv~~~~~d~~~~~p-   80 (90)
                      +++..+|||+|||+|..+..|+++  +.+++++|+ +.|++.|++                  ...+++..+|+++..+ 
T Consensus        18 ~~~~~rvLd~GCG~G~~a~~la~~--G~~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~   95 (201)
T d1pjza_          18 VVPGARVLVPLCGKSQDMSWLSGQ--GYHVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIWCGDFFALTAR   95 (201)
T ss_dssp             CCTTCEEEETTTCCSHHHHHHHHH--CCEEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEEEECCSSSTHH
T ss_pred             CCCCCEEEEecCcCCHHHHHHHHc--CCceEeecccHHHHHHHHHHhccccchhhhhhhhhccccccceecccccccccc
Confidence            567789999999999999999997  689999999 999998864                  1456889999988322 


Q ss_pred             ---cccEEEeec
Q 034578           81 ---NADAVFMKV   89 (90)
Q Consensus        81 ---~~D~i~l~~   89 (90)
                         .+|+|+.+.
T Consensus        96 ~~~~~D~i~~~~  107 (201)
T d1pjza_          96 DIGHCAAFYDRA  107 (201)
T ss_dssp             HHHSEEEEEEES
T ss_pred             cccceeEEEEEe
Confidence               279887654

>d2avna1 c.66.1.41 (A:1-246) Hypothetical methyltransferase TM1389 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical methyltransferase TM1389
species: Thermotoga maritima [TaxId: 2336]

Probab=99.33  E-value=1.4e-12  Score=82.16  Aligned_cols=64  Identities=22%  Similarity=0.280  Sum_probs=53.4

Q ss_pred             CCCCeEEEecCCchHHHHHHHHHCCCCeEEEeeh-HHHHHhCCCCCCeeEEEecCCC-CCCc--ccEEEe
Q 034578           22 NNIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDL-QHVIATAPTHEGVSHVGGDMFD-AIPN--ADAVFM   87 (90)
Q Consensus        22 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~~rv~~~~~d~~~-~~p~--~D~i~l   87 (90)
                      .+..+|||+|||+|.++..+++.  ..+++++|+ +.+++.|+++....++.+|+.+ +++.  +|+|++
T Consensus        41 ~~~~~vLDiGcG~G~~~~~l~~~--~~~v~giD~s~~~l~~a~~~~~~~~~~~~~~~l~~~~~~fD~ii~  108 (246)
T d2avna1          41 KNPCRVLDLGGGTGKWSLFLQER--GFEVVLVDPSKEMLEVAREKGVKNVVEAKAEDLPFPSGAFEAVLA  108 (246)
T ss_dssp             CSCCEEEEETCTTCHHHHHHHTT--TCEEEEEESCHHHHHHHHHHTCSCEEECCTTSCCSCTTCEEEEEE
T ss_pred             CCCCEEEEECCCCchhccccccc--ceEEEEeecccccccccccccccccccccccccccccccccceee
Confidence            35679999999999999999886  578999999 9999999886555677888877 5653  999885

>d1i9ga_ c.66.1.13 (A:) Probable methyltransferase Rv2118c {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Probable methyltransferase Rv2118c
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.32  E-value=2.5e-12  Score=83.89  Aligned_cols=77  Identities=16%  Similarity=0.270  Sum_probs=65.9

Q ss_pred             HHHHHhhcccCCCCCCCeEEEecCCchHHHHHHHHH-CCCCeEEEeeh-HHHHHhCCC---------CCCeeEEEecCCC
Q 034578            9 MKAFVSHYKVDGFNNIRSMVDVGGGTGTVLAEIVKS-YPHIKGINFDL-QHVIATAPT---------HEGVSHVGGDMFD   77 (90)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~-~p~~~~~~~D~-p~~~~~a~~---------~~rv~~~~~d~~~   77 (90)
                      +..++..++   ..+..+|||+|||+|.++..|++. .|+.+++.+|+ +++++.|++         .++++++.+|+.+
T Consensus        85 ~s~Ii~~l~---i~PG~~VLE~G~GsG~lt~~La~~vgp~G~V~~~d~~~~~~~~Ar~n~~~~~~~~~~nv~~~~~d~~~  161 (264)
T d1i9ga_          85 AAQIVHEGD---IFPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQPPDNWRLVVSDLAD  161 (264)
T ss_dssp             HHHHHHHTT---CCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHHTSCCTTEEEECSCGGG
T ss_pred             HHHHHHHhC---CCCCCEEEecCcCCcHHHHHHHHhhCCCcEEEEecCCHHHHHHHHHhhhhhccCCCceEEEEeccccc
Confidence            455667777   778899999999999999999998 69999999999 999998875         2789999999987


Q ss_pred             -CCCc--ccEEEee
Q 034578           78 -AIPN--ADAVFMK   88 (90)
Q Consensus        78 -~~p~--~D~i~l~   88 (90)
                       ++++  +|.|++.
T Consensus       162 ~~~~~~~fDaV~ld  175 (264)
T d1i9ga_         162 SELPDGSVDRAVLD  175 (264)
T ss_dssp             CCCCTTCEEEEEEE
T ss_pred             ccccCCCcceEEEe
Confidence             5654  9999874

>d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein Ta0852
species: Thermoplasma acidophilum [TaxId: 2303]

Probab=99.31  E-value=2.9e-12  Score=82.98  Aligned_cols=76  Identities=17%  Similarity=0.167  Sum_probs=60.5

Q ss_pred             HHHHhhcccCCCCCCCeEEEecCCchHHHHHHHHH-CCCCeEEEeeh-HHHHHhCCC-------CCCeeEEEecCCCCCC
Q 034578           10 KAFVSHYKVDGFNNIRSMVDVGGGTGTVLAEIVKS-YPHIKGINFDL-QHVIATAPT-------HEGVSHVGGDMFDAIP   80 (90)
Q Consensus        10 ~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~-~p~~~~~~~D~-p~~~~~a~~-------~~rv~~~~~d~~~~~p   80 (90)
                      ..++..++   ..+..+|||+|||+|.++..+++. .|..+++++|. +++++.|++       ..++++..+|+.+.++
T Consensus        75 ~~Ii~~l~---i~pG~rVLEiG~GsG~lt~~la~~v~~~g~V~~vD~~e~~~~~A~~n~~~~~~~~nv~~~~~Di~~~~~  151 (250)
T d1yb2a1          75 SYIIMRCG---LRPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYDIGNVRTSRSDIADFIS  151 (250)
T ss_dssp             ------CC---CCTTCEEEEECCTTSHHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHHHTTSCCTTEEEECSCTTTCCC
T ss_pred             HHHHHHcC---CCCcCEEEEeeeeCcHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhcCCCceEEEEeeeecccc
Confidence            34555555   677899999999999999999997 68999999999 999888875       2689999999988665


Q ss_pred             c--ccEEEee
Q 034578           81 N--ADAVFMK   88 (90)
Q Consensus        81 ~--~D~i~l~   88 (90)
                      +  +|.|++.
T Consensus       152 ~~~fD~V~ld  161 (250)
T d1yb2a1         152 DQMYDAVIAD  161 (250)
T ss_dssp             SCCEEEEEEC
T ss_pred             cceeeeeeec
Confidence            4  9999874

>d1dl5a1 c.66.1.7 (A:1-213) Protein-L-isoaspartyl O-methyltransferase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Thermotoga maritima [TaxId: 2336]

Probab=99.31  E-value=3.2e-12  Score=80.72  Aligned_cols=78  Identities=22%  Similarity=0.355  Sum_probs=64.7

Q ss_pred             hHHHHHhhcccCCCCCCCeEEEecCCchHHHHHHHHHC-CCCeEEEeeh-HHHHHhCCC------CCCeeEEEecCCCCC
Q 034578            8 TMKAFVSHYKVDGFNNIRSMVDVGGGTGTVLAEIVKSY-PHIKGINFDL-QHVIATAPT------HEGVSHVGGDMFDAI   79 (90)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~-p~~~~~~~D~-p~~~~~a~~------~~rv~~~~~d~~~~~   79 (90)
                      +...+++.+.   ..+..+|||||||+|.++..+++.. |..+++++|. |.+++.|++      ..++.++.+|..+.+
T Consensus        63 ~~a~~l~~l~---l~~g~~VLdiG~GtG~~s~~la~~~~~~g~V~~id~~~~~~~~a~~~~~~~~~~n~~~~~~d~~~~~  139 (213)
T d1dl5a1          63 LMALFMEWVG---LDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLGIENVIFVCGDGYYGV  139 (213)
T ss_dssp             HHHHHHHHTT---CCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCC
T ss_pred             hhHHHHHhhh---ccccceEEEecCccchhHHHHHHHhCCCCcEEEeecchhhHHHhhhhHhhhcccccccccCchHHcc
Confidence            3456677777   7788999999999999999999875 7889999999 999998876      378999999987743


Q ss_pred             C---cccEEEee
Q 034578           80 P---NADAVFMK   88 (90)
Q Consensus        80 p---~~D~i~l~   88 (90)
                      +   .||+|++.
T Consensus       140 ~~~~~fD~I~~~  151 (213)
T d1dl5a1         140 PEFSPYDVIFVT  151 (213)
T ss_dssp             GGGCCEEEEEEC
T ss_pred             ccccchhhhhhh
Confidence            3   28999875

>d2nxca1 c.66.1.39 (A:1-254) PrmA-like protein TTHA0656 (TT0836) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ribosomal protein L11 methyltransferase PrmA
domain: PrmA-like protein TTHA0656 (TT0836)
species: Thermus thermophilus [TaxId: 274]

Probab=99.29  E-value=1.3e-12  Score=84.68  Aligned_cols=64  Identities=20%  Similarity=0.284  Sum_probs=52.5

Q ss_pred             CCCeEEEecCCchHHHHHHHHHCCCCeEEEeeh-HHHHHhCCC-----CCCeeEEEecCCCCCC--cccEEEee
Q 034578           23 NIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDL-QHVIATAPT-----HEGVSHVGGDMFDAIP--NADAVFMK   88 (90)
Q Consensus        23 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~-----~~rv~~~~~d~~~~~p--~~D~i~l~   88 (90)
                      +..+|||+|||+|.+++.+++.  ..+++++|+ |.+++.|++     .-+++++.+|+.+.++  .||+|+.+
T Consensus       120 ~g~~VLDiGcGsG~l~i~aa~~--g~~V~gvDis~~av~~A~~na~~n~~~~~~~~~d~~~~~~~~~fD~V~an  191 (254)
T d2nxca1         120 PGDKVLDLGTGSGVLAIAAEKL--GGKALGVDIDPMVLPQAEANAKRNGVRPRFLEGSLEAALPFGPFDLLVAN  191 (254)
T ss_dssp             TTCEEEEETCTTSHHHHHHHHT--TCEEEEEESCGGGHHHHHHHHHHTTCCCEEEESCHHHHGGGCCEEEEEEE
T ss_pred             ccCEEEEcccchhHHHHHHHhc--CCEEEEEECChHHHHHHHHHHHHcCCceeEEeccccccccccccchhhhc
Confidence            5689999999999999988875  468999999 999998876     2457888998876444  39999875

>d1ne2a_ c.66.1.32 (A:) Hypothetical protein Ta1320 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ta1320-like
domain: Hypothetical protein Ta1320
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.28  E-value=1.9e-12  Score=81.30  Aligned_cols=63  Identities=27%  Similarity=0.338  Sum_probs=53.3

Q ss_pred             CCeEEEecCCchHHHHHHHHHCCCCeEEEeeh-HHHHHhCCCC-CCeeEEEecCCCCCCc-ccEEEee
Q 034578           24 IRSMVDVGGGTGTVLAEIVKSYPHIKGINFDL-QHVIATAPTH-EGVSHVGGDMFDAIPN-ADAVFMK   88 (90)
Q Consensus        24 ~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~-~rv~~~~~d~~~~~p~-~D~i~l~   88 (90)
                      ..+|||+|||+|.+++.+++..+ .+++++|+ |.+++.|+++ .++.++.+|+.+ ++. +|+|+++
T Consensus        49 Gk~VLDlGcGtG~l~i~a~~~ga-~~V~~vDid~~a~~~ar~N~~~~~~~~~D~~~-l~~~fD~Vi~N  114 (197)
T d1ne2a_          49 GRSVIDAGTGNGILACGSYLLGA-ESVTAFDIDPDAIETAKRNCGGVNFMVADVSE-ISGKYDTWIMN  114 (197)
T ss_dssp             TSEEEEETCTTCHHHHHHHHTTB-SEEEEEESCHHHHHHHHHHCTTSEEEECCGGG-CCCCEEEEEEC
T ss_pred             CCEEEEeCCCCcHHHHHHHHcCC-CcccccccCHHHHHHHHHccccccEEEEehhh-cCCcceEEEeC
Confidence            57999999999999998887654 47999999 9999998874 779999999966 444 9999875

>d2fk8a1 c.66.1.18 (A:22-301) Methoxy mycolic acid synthase 4, Mma4 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: Methoxy mycolic acid synthase 4, Mma4
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.26  E-value=1.1e-11  Score=81.20  Aligned_cols=81  Identities=14%  Similarity=0.165  Sum_probs=62.6

Q ss_pred             hhhhHHHHHhhcccCCCCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeeh-HHHHHhCCC-------CCCeeEEEecCC
Q 034578            5 TKITMKAFVSHYKVDGFNNIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDL-QHVIATAPT-------HEGVSHVGGDMF   76 (90)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~-------~~rv~~~~~d~~   76 (90)
                      |....+.+++.+.   +.+..+|||||||+|.++..++++++ .+++++|+ ++.++.|++       ..++.+...|+.
T Consensus        37 Q~~k~~~~~~~l~---l~~g~~VLDiGCG~G~~a~~~a~~~g-~~v~gi~ls~~q~~~a~~~~~~~~l~~~~~~~~~d~~  112 (280)
T d2fk8a1          37 QYAKVDLNLDKLD---LKPGMTLLDIGCGWGTTMRRAVERFD-VNVIGLTLSKNQHARCEQVLASIDTNRSRQVLLQGWE  112 (280)
T ss_dssp             HHHHHHHHHTTSC---CCTTCEEEEESCTTSHHHHHHHHHHC-CEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCGG
T ss_pred             HHHHHHHHHHHcC---CCCCCEEEEecCCchHHHHHHHHhCc-eeEEEecchHHHHHHHHHHHHhhccccchhhhhhhhh
Confidence            3445677888887   77889999999999999999988875 69999999 888877654       356788777765


Q ss_pred             CCCCcccEEEeec
Q 034578           77 DAIPNADAVFMKV   89 (90)
Q Consensus        77 ~~~p~~D~i~l~~   89 (90)
                      +....+|.|+...
T Consensus       113 ~~~~~fD~i~si~  125 (280)
T d2fk8a1         113 DFAEPVDRIVSIE  125 (280)
T ss_dssp             GCCCCCSEEEEES
T ss_pred             hhccchhhhhHhh
Confidence            4323499988643

>d1ri5a_ c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransferase {Fungus (Encephalitozoon cuniculi) [TaxId: 6035]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: mRNA cap (Guanine N-7) methyltransferase
domain: mRNA cap (Guanine N-7) methyltransferase
species: Fungus (Encephalitozoon cuniculi) [TaxId: 6035]

Probab=99.25  E-value=9.4e-12  Score=79.66  Aligned_cols=67  Identities=18%  Similarity=0.155  Sum_probs=53.9

Q ss_pred             CCCCeEEEecCCchHHHHHHHHHCCCCeEEEeeh-HHHHHhCCC-------CCCeeEEEecCCC-CC--Cc-ccEEEeec
Q 034578           22 NNIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDL-QHVIATAPT-------HEGVSHVGGDMFD-AI--PN-ADAVFMKV   89 (90)
Q Consensus        22 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~-------~~rv~~~~~d~~~-~~--p~-~D~i~l~~   89 (90)
                      ++..+|||||||+|..+..+++... .+++++|+ +.+++.|++       ..++.+..+|.+. ++  .+ +|+|++..
T Consensus        23 ~~~~~VLDlGCG~G~~~~~~~~~~~-~~v~GiD~S~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~~~fD~V~~~~  101 (252)
T d1ri5a_          23 KRGDSVLDLGCGKGGDLLKYERAGI-GEYYGVDIAEVSINDARVRARNMKRRFKVFFRAQDSYGRHMDLGKEFDVISSQF  101 (252)
T ss_dssp             CTTCEEEEETCTTTTTHHHHHHHTC-SEEEEEESCHHHHHHHHHHHHTSCCSSEEEEEESCTTTSCCCCSSCEEEEEEES
T ss_pred             CCcCEEEEecccCcHHHHHHHHcCC-CeEEEecCCHHHHHHHHHHHHhcCCCcceEEEEcchhhhcccccccceEEEEcc
Confidence            3568999999999999999988743 47999999 999988864       2479999999976 33  22 99998753

>d1g8sa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.22  E-value=4.1e-11  Score=76.50  Aligned_cols=71  Identities=13%  Similarity=0.125  Sum_probs=57.2

Q ss_pred             hhHHHHHhhcccCCCCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeeh-HHHHHhCC----CCCCeeEEEecCCC
Q 034578            7 ITMKAFVSHYKVDGFNNIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDL-QHVIATAP----THEGVSHVGGDMFD   77 (90)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~----~~~rv~~~~~d~~~   77 (90)
                      .++..++..++...+.+..+|||+|||+|..+..+++..|+.+++++|+ |.+++.++    +.+++..+.+|...
T Consensus        58 klaA~i~~gl~~l~ikpG~~VLDlGcGsG~~~~~la~~~~~g~V~aVDiS~~~i~~a~~~a~~~~ni~~i~~d~~~  133 (230)
T d1g8sa_          58 KLAAAIIKGLKVMPIKRDSKILYLGASAGTTPSHVADIADKGIVYAIEYAPRIMRELLDACAERENIIPILGDANK  133 (230)
T ss_dssp             HHHHHHHTTCCCCCCCTTCEEEEESCCSSHHHHHHHHHTTTSEEEEEESCHHHHHHHHHHTTTCTTEEEEECCTTC
T ss_pred             HHHHHHHhhHHhCCCCCCCEEEEeCEEcCHHHHHHHHhCCCCEEEEEeCcHHHHHHHHHHHhhhcccceEEEeecc
Confidence            5566776655521156778999999999999999999999999999999 98877654    35788888888876

>d1nv8a_ c.66.1.30 (A:) N5-glutamine methyltransferase, HemK {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N5-glutamine methyltransferase, HemK
domain: N5-glutamine methyltransferase, HemK
species: Thermotoga maritima [TaxId: 2336]

Probab=99.22  E-value=6.7e-12  Score=82.08  Aligned_cols=82  Identities=12%  Similarity=0.261  Sum_probs=66.8

Q ss_pred             cchhhhHHHHHhhcccCCCCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeeh-HHHHHhCCC-------CCCeeEEEec
Q 034578            3 CTTKITMKAFVSHYKVDGFNNIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDL-QHVIATAPT-------HEGVSHVGGD   74 (90)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~-------~~rv~~~~~d   74 (90)
                      ..++.+++.+++...   ..+..+++|+|||+|.++..+++ +|+.+++++|+ |.+++.|++       ..++.+..+|
T Consensus        93 peTE~lv~~~~~~~~---~~~~~~vld~g~GsG~i~~~la~-~~~~~v~a~Dis~~Al~~A~~Na~~~~~~~~~~i~~~~  168 (271)
T d1nv8a_          93 PETEELVELALELIR---KYGIKTVADIGTGSGAIGVSVAK-FSDAIVFATDVSSKAVEIARKNAERHGVSDRFFVRKGE  168 (271)
T ss_dssp             TTHHHHHHHHHHHHH---HHTCCEEEEESCTTSHHHHHHHH-HSSCEEEEEESCHHHHHHHHHHHHHTTCTTSEEEEESS
T ss_pred             hhhhhhhhhhhhhhc---cccccEEEEeeeeeehhhhhhhh-cccceeeechhhhhHHHHHHHHHHHcCCCceeEEeecc
Confidence            346777888777666   33467899999999999999875 79999999999 999999876       3688999999


Q ss_pred             CCCCCC----cccEEEee
Q 034578           75 MFDAIP----NADAVFMK   88 (90)
Q Consensus        75 ~~~~~p----~~D~i~l~   88 (90)
                      ++++++    .+|+|+.+
T Consensus       169 ~~~~~~~~~~~fDlIVsN  186 (271)
T d1nv8a_         169 FLEPFKEKFASIEMILSN  186 (271)
T ss_dssp             TTGGGGGGTTTCCEEEEC
T ss_pred             cccccccccCcccEEEEc
Confidence            998543    38999875

>d1kpia_ c.66.1.18 (A:) CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: CmaA2
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.21  E-value=2.4e-11  Score=79.99  Aligned_cols=79  Identities=14%  Similarity=0.144  Sum_probs=62.2

Q ss_pred             hhhhHHHHHhhcccCCCCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeeh-HHHHHhCCC-------CCCeeEEEecCC
Q 034578            5 TKITMKAFVSHYKVDGFNNIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDL-QHVIATAPT-------HEGVSHVGGDMF   76 (90)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~-------~~rv~~~~~d~~   76 (90)
                      ++...+.+++.+.   +.+..+|||||||.|.++..++++++ ++++++++ ++.++.+++       ..++++...|+.
T Consensus        46 q~~k~~~~~~~l~---l~~G~~VLDiGCG~G~~~~~~a~~~g-~~v~git~s~~q~~~a~~~~~~~~l~~~v~~~~~d~~  121 (291)
T d1kpia_          46 QYAKRKLALDKLN---LEPGMTLLDIGCGWGSTMRHAVAEYD-VNVIGLTLSENQYAHDKAMFDEVDSPRRKEVRIQGWE  121 (291)
T ss_dssp             HHHHHHHHHHTTC---CCTTCEEEEETCTTSHHHHHHHHHHC-CEEEEEESCHHHHHHHHHHHHHSCCSSCEEEEECCGG
T ss_pred             HHHHHHHHHHhcC---CCCCCEEEEecCcchHHHHHHHHhcC-cceeeccchHHHHHHHHHHHHhhccchhhhhhhhccc
Confidence            4555677888887   78889999999999999999999986 69999999 776665543       368888888874


Q ss_pred             CCCCcccEEEe
Q 034578           77 DAIPNADAVFM   87 (90)
Q Consensus        77 ~~~p~~D~i~l   87 (90)
                      .+-..||.|+.
T Consensus       122 ~~~~~fD~i~s  132 (291)
T d1kpia_         122 EFDEPVDRIVS  132 (291)
T ss_dssp             GCCCCCSEEEE
T ss_pred             ccccccceEee
Confidence            33234998875

>d1kpga_ c.66.1.18 (A:) CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: CmaA1
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.20  E-value=2.5e-11  Score=79.71  Aligned_cols=78  Identities=12%  Similarity=0.189  Sum_probs=62.6

Q ss_pred             hhhhHHHHHhhcccCCCCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeeh-HHHHHhCCC-------CCCeeEEEecCC
Q 034578            5 TKITMKAFVSHYKVDGFNNIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDL-QHVIATAPT-------HEGVSHVGGDMF   76 (90)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~-------~~rv~~~~~d~~   76 (90)
                      |....+.+++.+.   +.+..+|||||||.|.++..+++++ +++++++++ +.-++.+++       .+++++..+|+.
T Consensus        47 Q~~k~~~~~~~l~---l~~G~~VLDiGCG~G~~a~~~a~~~-g~~v~git~s~~Q~~~a~~~~~~~g~~~~v~~~~~d~~  122 (285)
T d1kpga_          47 QIAKIDLALGKLG---LQPGMTLLDVGCGWGATMMRAVEKY-DVNVVGLTLSKNQANHVQQLVANSENLRSKRVLLAGWE  122 (285)
T ss_dssp             HHHHHHHHHTTTT---CCTTCEEEEETCTTSHHHHHHHHHH-CCEEEEEESCHHHHHHHHHHHHTCCCCSCEEEEESCGG
T ss_pred             HHHHHHHHHHHcC---CCCCCEEEEecCcchHHHHHHHhcC-CcceEEEeccHHHHHHHHHHHHhhhhhhhhHHHHhhhh
Confidence            4455677888887   7888999999999999999999998 489999998 776665543       378999999985


Q ss_pred             CCCCc-ccEEEe
Q 034578           77 DAIPN-ADAVFM   87 (90)
Q Consensus        77 ~~~p~-~D~i~l   87 (90)
                      + +|. +|.|+.
T Consensus       123 ~-~~~~fD~i~s  133 (285)
T d1kpga_         123 Q-FDEPVDRIVS  133 (285)
T ss_dssp             G-CCCCCSEEEE
T ss_pred             c-ccccccceee
Confidence            5 344 888764

>d1vlma_ c.66.1.41 (A:) Possible histamine N-methyltransferase TM1293 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Possible histamine N-methyltransferase TM1293
species: Thermotoga maritima [TaxId: 2336]

Probab=99.20  E-value=6.6e-12  Score=77.90  Aligned_cols=61  Identities=20%  Similarity=0.253  Sum_probs=50.0

Q ss_pred             CCCeEEEecCCchHHHHHHHHHCCCCeEEEeeh-HHHHHhCCCCCCeeEEEecCCC-CCCc--ccEEEeecC
Q 034578           23 NIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDL-QHVIATAPTHEGVSHVGGDMFD-AIPN--ADAVFMKVA   90 (90)
Q Consensus        23 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~~rv~~~~~d~~~-~~p~--~D~i~l~~v   90 (90)
                      +..+|||||||+|.++..+.      +.+++|+ |.+++.++++ +++++.+|+.+ ++++  +|+|++.++
T Consensus        36 ~~~~vLDiGcG~G~~~~~~~------~~~giD~s~~~~~~a~~~-~~~~~~~d~~~l~~~~~~fD~I~~~~~  100 (208)
T d1vlma_          36 PEGRGVEIGVGTGRFAVPLK------IKIGVEPSERMAEIARKR-GVFVLKGTAENLPLKDESFDFALMVTT  100 (208)
T ss_dssp             CSSCEEEETCTTSTTHHHHT------CCEEEESCHHHHHHHHHT-TCEEEECBTTBCCSCTTCEEEEEEESC
T ss_pred             CCCeEEEECCCCcccccccc------eEEEEeCChhhccccccc-ccccccccccccccccccccccccccc
Confidence            35689999999999988774      3589999 9999998865 68999999987 5553  999998764

>d1i1na_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.20  E-value=3.7e-11  Score=76.35  Aligned_cols=79  Identities=19%  Similarity=0.128  Sum_probs=62.0

Q ss_pred             HHHHHhhcccCCCCCCCeEEEecCCchHHHHHHHHH-CCCCeEEEeeh-HHHHHhCCC-----------CCCeeEEEecC
Q 034578            9 MKAFVSHYKVDGFNNIRSMVDVGGGTGTVLAEIVKS-YPHIKGINFDL-QHVIATAPT-----------HEGVSHVGGDM   75 (90)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~-~p~~~~~~~D~-p~~~~~a~~-----------~~rv~~~~~d~   75 (90)
                      ...+++.+.. ...+..+|||||||+|..+..+++. .|..+++++|+ +++++.|++           ..++++..+|.
T Consensus        63 ~a~~le~L~~-~l~~g~~VLdiG~GsGy~ta~la~l~~~~g~V~~ie~~~~l~~~a~~~l~~~~~~~~~~~~~~~~~gD~  141 (224)
T d1i1na_          63 HAYALELLFD-QLHEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQLVVGDG  141 (224)
T ss_dssp             HHHHHHHTTT-TSCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCTHHHHTSSEEEEESCG
T ss_pred             HHHHHHHHhh-ccCCCCeEEEecCCCCHHHHHHHHHhCCCceEEEEcCCHHHHHHHHHhccccCcccccccceEEEEeec
Confidence            4456666531 1566789999999999999999886 57889999999 999988864           26789999998


Q ss_pred             CCCCC---cccEEEee
Q 034578           76 FDAIP---NADAVFMK   88 (90)
Q Consensus        76 ~~~~p---~~D~i~l~   88 (90)
                      .+..+   .||.|++.
T Consensus       142 ~~~~~~~~~fD~I~~~  157 (224)
T d1i1na_         142 RMGYAEEAPYDAIHVG  157 (224)
T ss_dssp             GGCCGGGCCEEEEEEC
T ss_pred             ccccchhhhhhhhhhh
Confidence            87433   28999875

>d1zx0a1 c.66.1.16 (A:8-236) Guanidinoacetate methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Guanidinoacetate methyltransferase
domain: Guanidinoacetate methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.19  E-value=5.2e-12  Score=80.14  Aligned_cols=79  Identities=14%  Similarity=0.130  Sum_probs=57.9

Q ss_pred             chhhhHHHHHhhcccCCCCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeeh-HHHHHhCCC-----CCCeeEEEecCCC
Q 034578            4 TTKITMKAFVSHYKVDGFNNIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDL-QHVIATAPT-----HEGVSHVGGDMFD   77 (90)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~-----~~rv~~~~~d~~~   77 (90)
                      +.+.+.+.+++...    ....+|||||||+|..+..++++.| .+++++|+ |.+++.|++     ..++.++.+|+..
T Consensus        38 w~~~~~~~la~~~~----~~g~~VLdIGcG~G~~a~~~a~~~~-~~v~~id~s~~~~~~a~~~~~~~~~~~~~~~~~~~~  112 (229)
T d1zx0a1          38 WETPYMHALAAAAS----SKGGRVLEVGFGMAIAASKVQEAPI-DEHWIIECNDGVFQRLRDWAPRQTHKVIPLKGLWED  112 (229)
T ss_dssp             GGHHHHHHHHHHHT----TTCEEEEEECCTTSHHHHHHHTSCE-EEEEEEECCHHHHHHHHHHGGGCSSEEEEEESCHHH
T ss_pred             HHHHHHHHHHHhhc----cCCCeEEEeeccchHHHHHHHHcCC-CeEEEeCCCHHHHHHHHHHhhhcccccccccccccc
Confidence            44445555555554    3457999999999999999998755 57999999 999998865     3567777777543


Q ss_pred             ---CCCc--ccEEEe
Q 034578           78 ---AIPN--ADAVFM   87 (90)
Q Consensus        78 ---~~p~--~D~i~l   87 (90)
                         +++.  +|.|++
T Consensus       113 ~~~~~~~~~fD~i~f  127 (229)
T d1zx0a1         113 VAPTLPDGHFDGILY  127 (229)
T ss_dssp             HGGGSCTTCEEEEEE
T ss_pred             cccccccccccceee
Confidence               4543  888875

>d2bzga1 c.66.1.36 (A:17-245) Thiopurine S-methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Thiopurine S-methyltransferase
domain: Thiopurine S-methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.19  E-value=1.4e-11  Score=77.98  Aligned_cols=76  Identities=12%  Similarity=0.026  Sum_probs=57.5

Q ss_pred             hHHHHHhhcccCCCCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeeh-HHHHHhCCC----------------------
Q 034578            8 TMKAFVSHYKVDGFNNIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDL-QHVIATAPT----------------------   64 (90)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~----------------------   64 (90)
                      +.+.+-+.+.   ..+..+|||+|||+|..+..|+++  +.+++++|+ |.+++.+++                      
T Consensus        33 l~~~~~~~l~---~~~~~rvLd~GCG~G~~a~~LA~~--G~~V~gvD~S~~ai~~a~~~~~~~~~~~~~~~~~~~~~~~~  107 (229)
T d2bzga1          33 LKKHLDTFLK---GKSGLRVFFPLCGKAVEMKWFADR--GHSVVGVEISELGIQEFFTEQNLSYSEEPITEIPGTKVFKS  107 (229)
T ss_dssp             HHHHHHHHHT---TCCSCEEEETTCTTCTHHHHHHHT--TCEEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEE
T ss_pred             HHHHHHHhcC---CCCCCEEEEeCCCCcHHHHHHHhC--CCcEEEEeCCHHHHHHHHHHhhccccccchhcccccceeee
Confidence            3344444444   456789999999999999999996  678999999 999986532                      


Q ss_pred             -CCCeeEEEecCCC-C-CC-c-ccEEEee
Q 034578           65 -HEGVSHVGGDMFD-A-IP-N-ADAVFMK   88 (90)
Q Consensus        65 -~~rv~~~~~d~~~-~-~p-~-~D~i~l~   88 (90)
                       ..++++..+|+++ + .+ . +|+|+.+
T Consensus       108 ~~~~v~~~~~d~~~l~~~~~~~fd~i~~~  136 (229)
T d2bzga1         108 SSGNISLYCCSIFDLPRTNIGKFDMIWDR  136 (229)
T ss_dssp             TTSSEEEEESCGGGGGGSCCCCEEEEEES
T ss_pred             cCCcEEEEEcchhhccccccCceeEEEEE
Confidence             2579999999987 2 22 2 8988754

>d2fcaa1 c.66.1.53 (A:10-213) tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TrmB-like
domain: tRNA (guanine-N(7)-)-methyltransferase TrmB
species: Bacillus subtilis [TaxId: 1423]

Probab=99.18  E-value=1.8e-11  Score=77.03  Aligned_cols=65  Identities=25%  Similarity=0.379  Sum_probs=53.6

Q ss_pred             CCeEEEecCCchHHHHHHHHHCCCCeEEEeeh-HHHHHhCCC------CCCeeEEEecCCC---CCCc--ccEEEee
Q 034578           24 IRSMVDVGGGTGTVLAEIVKSYPHIKGINFDL-QHVIATAPT------HEGVSHVGGDMFD---AIPN--ADAVFMK   88 (90)
Q Consensus        24 ~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~------~~rv~~~~~d~~~---~~p~--~D~i~l~   88 (90)
                      ...+||||||+|..+..+++++|+..++++|+ +.++..+.+      ..|++++.+|+..   .++.  +|.+++.
T Consensus        30 ~PlvLeIGcG~G~~~~~lA~~~p~~~~iGiD~~~~~i~~a~~~~~~~~l~Nv~~~~~Da~~l~~~~~~~~~d~v~i~  106 (204)
T d2fcaa1          30 NPIHIEVGTGKGQFISGMAKQNPDINYIGIELFKSVIVTAVQKVKDSEAQNVKLLNIDADTLTDVFEPGEVKRVYLN  106 (204)
T ss_dssp             CCEEEEECCTTSHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHSCCSSEEEECCCGGGHHHHCCTTSCCEEEEE
T ss_pred             CceEEEEEecCcHHHHHHHHhCCCCcEEEeecchHHHHHHHHHHHHHhccCchhcccchhhhhcccCchhhhccccc
Confidence            35799999999999999999999999999998 888776643      3789999999865   2443  7877764

>d1yzha1 c.66.1.53 (A:8-211) tRNA (guanine-N(7)-)-methyltransferase TrmB {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TrmB-like
domain: tRNA (guanine-N(7)-)-methyltransferase TrmB
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=99.17  E-value=5.7e-11  Score=74.65  Aligned_cols=65  Identities=23%  Similarity=0.360  Sum_probs=53.7

Q ss_pred             CCeEEEecCCchHHHHHHHHHCCCCeEEEeeh-HHHHHhCCC------CCCeeEEEecCCC---CCCc--ccEEEee
Q 034578           24 IRSMVDVGGGTGTVLAEIVKSYPHIKGINFDL-QHVIATAPT------HEGVSHVGGDMFD---AIPN--ADAVFMK   88 (90)
Q Consensus        24 ~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~------~~rv~~~~~d~~~---~~p~--~D~i~l~   88 (90)
                      ...+||||||+|.++..+++.+|+..++++|+ +.++..+.+      -.+++++.+|..+   .+|.  +|.|++.
T Consensus        32 ~plvLdIGcG~G~~~~~lA~~~p~~~~iGid~~~~~v~~a~~~~~~~~l~Ni~~~~~da~~l~~~~~~~~~~~i~i~  108 (204)
T d1yzha1          32 NPIHVEVGSGKGAFVSGMAKQNPDINYIGIDIQKSVLSYALDKVLEVGVPNIKLLWVDGSDLTDYFEDGEIDRLYLN  108 (204)
T ss_dssp             CCEEEEESCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCCSSEEEEECCSSCGGGTSCTTCCSEEEEE
T ss_pred             CCeEEEEeccCCHHHHHHHHHCCCCceEEEeccHHHHHHHHHhhhhhccccceeeecCHHHHhhhccCCceehhccc
Confidence            35799999999999999999999999999998 887776643      3789999999866   2443  7877764

>d1nt2a_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=99.17  E-value=4.8e-11  Score=75.16  Aligned_cols=70  Identities=6%  Similarity=0.019  Sum_probs=57.2

Q ss_pred             hhHHHHHhhcccCCCCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeeh-HHHHHhCCC----CCCeeEEEecCCC
Q 034578            7 ITMKAFVSHYKVDGFNNIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDL-QHVIATAPT----HEGVSHVGGDMFD   77 (90)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~----~~rv~~~~~d~~~   77 (90)
                      .++..++....- .+++..+|||+|||+|..+..+++..|+.+++++|+ |.+++.+++    .+++.++.+|...
T Consensus        41 klaa~i~~g~~l-~lkpg~~VLDlGcG~G~~~~~la~~v~~g~V~gvDis~~~i~~a~~~a~~~~ni~~i~~d~~~  115 (209)
T d1nt2a_          41 KLAAMILKGHRL-KLRGDERVLYLGAASGTTVSHLADIVDEGIIYAVEYSAKPFEKLLELVRERNNIIPLLFDASK  115 (209)
T ss_dssp             HHHHHHHTSCCC-CCCSSCEEEEETCTTSHHHHHHHHHTTTSEEEEECCCHHHHHHHHHHHHHCSSEEEECSCTTC
T ss_pred             HHHHHHhccccC-CCCCCCEEEEeCCcCCHHHHHHHHhccCCeEEEEeCCHHHHHHHHHHhhccCCceEEEeeccC
Confidence            446666654221 167789999999999999999999999999999999 999987764    5789999998876

>d2h00a1 c.66.1.54 (A:5-254) Methyltransferase 10 domain containing protein METT10D {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Methyltransferase 10 domain
domain: Methyltransferase 10 domain containing protein METT10D
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.17  E-value=2.3e-11  Score=78.53  Aligned_cols=66  Identities=11%  Similarity=0.088  Sum_probs=54.7

Q ss_pred             CCCeEEEecCCchHHHHHHHHHCCCCeEEEeeh-HHHHHhCCC-------CCCeeEEEecCCCC----C---C--cccEE
Q 034578           23 NIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDL-QHVIATAPT-------HEGVSHVGGDMFDA----I---P--NADAV   85 (90)
Q Consensus        23 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~-------~~rv~~~~~d~~~~----~---p--~~D~i   85 (90)
                      ...++||+|||+|+++..+++++|+.+++++|+ |.+++.|++       .+|+.++..+....    +   .  .||+|
T Consensus        61 ~~~~~LDiGtGsg~I~~~l~~~~~~~~~~~~Di~~~al~~A~~N~~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i  140 (250)
T d2h00a1          61 TLRRGIDIGTGASCIYPLLGATLNGWYFLATEVDDMCFNYAKKNVEQNNLSDLIKVVKVPQKTLLMDALKEESEIIYDFC  140 (250)
T ss_dssp             CCCEEEEESCTTTTHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTCSSTTTSTTCCSCCBSEE
T ss_pred             ccceEEEeCCCchHHHHHHHHhCCCccccceecCHHHHHHHHHHHHHhCCCcceeeeeeccHHhhhhhhhhcccCceeEE
Confidence            446899999999999999999999999999999 999999986       37888887655432    1   1  28999


Q ss_pred             Eee
Q 034578           86 FMK   88 (90)
Q Consensus        86 ~l~   88 (90)
                      +.+
T Consensus       141 vsN  143 (250)
T d2h00a1         141 MCN  143 (250)
T ss_dssp             EEC
T ss_pred             Eec
Confidence            875

>d1vbfa_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Sulfolobus tokodaii [TaxId: 111955]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Sulfolobus tokodaii [TaxId: 111955]

Probab=99.17  E-value=5.4e-11  Score=75.77  Aligned_cols=75  Identities=15%  Similarity=0.166  Sum_probs=61.0

Q ss_pred             HHHHHhhcccCCCCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeeh-HHHHHhCCC----CCCeeEEEecCCCCCCc--
Q 034578            9 MKAFVSHYKVDGFNNIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDL-QHVIATAPT----HEGVSHVGGDMFDAIPN--   81 (90)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~----~~rv~~~~~d~~~~~p~--   81 (90)
                      ...+++.++   +.+..+|||||||+|.++..+++..  .+++.+|. |..++.|++    ..+++++.+|.+..+|+  
T Consensus        59 ~a~ml~~L~---l~~g~~VLdIG~GsGy~ta~La~l~--~~V~aiE~~~~~~~~A~~~~~~~~nv~~~~~d~~~g~~~~~  133 (224)
T d1vbfa_          59 GIFMLDELD---LHKGQKVLEIGTGIGYYTALIAEIV--DKVVSVEINEKMYNYASKLLSYYNNIKLILGDGTLGYEEEK  133 (224)
T ss_dssp             HHHHHHHTT---CCTTCEEEEECCTTSHHHHHHHHHS--SEEEEEESCHHHHHHHHHHHTTCSSEEEEESCGGGCCGGGC
T ss_pred             HHHHHHHhh---hcccceEEEecCCCCHHHHHHHHHh--cccccccccHHHHHHHHHHHhcccccccccCchhhcchhhh
Confidence            345677777   7788999999999999999888874  67999998 888887764    47899999998774442  


Q ss_pred             -ccEEEee
Q 034578           82 -ADAVFMK   88 (90)
Q Consensus        82 -~D~i~l~   88 (90)
                       ||.|++.
T Consensus       134 pfD~Iiv~  141 (224)
T d1vbfa_         134 PYDRVVVW  141 (224)
T ss_dssp             CEEEEEES
T ss_pred             hHHHHHhh
Confidence             8999874

>d1o54a_ c.66.1.13 (A:) Hypothetical protein TM0748 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein TM0748
species: Thermotoga maritima [TaxId: 2336]

Probab=99.16  E-value=3.4e-11  Score=78.38  Aligned_cols=77  Identities=17%  Similarity=0.251  Sum_probs=63.6

Q ss_pred             HHHHHhhcccCCCCCCCeEEEecCCchHHHHHHHHHC-CCCeEEEeeh-HHHHHhCCC-------CCCeeEEEecCCCCC
Q 034578            9 MKAFVSHYKVDGFNNIRSMVDVGGGTGTVLAEIVKSY-PHIKGINFDL-QHVIATAPT-------HEGVSHVGGDMFDAI   79 (90)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~-p~~~~~~~D~-p~~~~~a~~-------~~rv~~~~~d~~~~~   79 (90)
                      +..++..++   ..+..+|||+|||+|.++..+++.. |..+++++|. |++++.|++       .+++.+..+|+...+
T Consensus        92 ~~~Ii~~l~---i~pG~~VLDiG~GsG~lt~~lA~~~~~~G~V~~vD~~~~~~~~A~~~~~~~g~~~~v~~~~~d~~~~~  168 (266)
T d1o54a_          92 SSFIAMMLD---VKEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWGLIERVTIKVRDISEGF  168 (266)
T ss_dssp             HHHHHHHTT---CCTTCEEEEECCTTSHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHHHHTTCGGGEEEECCCGGGCC
T ss_pred             HHHHHHhhC---CCCCCEEEECCCCCCHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhccccCcEEEeccccccc
Confidence            445667776   7788999999999999999999985 8999999999 999998876       267889889986655


Q ss_pred             Cc--ccEEEee
Q 034578           80 PN--ADAVFMK   88 (90)
Q Consensus        80 p~--~D~i~l~   88 (90)
                      +.  +|.+++.
T Consensus       169 ~~~~~D~V~~d  179 (266)
T d1o54a_         169 DEKDVDALFLD  179 (266)
T ss_dssp             SCCSEEEEEEC
T ss_pred             cccceeeeEec
Confidence            43  8888763

>d1wy7a1 c.66.1.32 (A:4-204) Hypothetical protein PH1948 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ta1320-like
domain: Hypothetical protein PH1948
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.16  E-value=3.8e-11  Score=75.16  Aligned_cols=65  Identities=17%  Similarity=0.185  Sum_probs=52.6

Q ss_pred             CCCeEEEecCCchHHHHHHHHHCCCCeEEEeeh-HHHHHhCCC-----CCCeeEEEecCCCCCCcccEEEee
Q 034578           23 NIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDL-QHVIATAPT-----HEGVSHVGGDMFDAIPNADAVFMK   88 (90)
Q Consensus        23 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~-----~~rv~~~~~d~~~~~p~~D~i~l~   88 (90)
                      ...+|||+|||+|.++++++.+. ..+++++|+ |.+++.+++     ..+.+++.+|..+.-..+|+|+++
T Consensus        46 ~g~~vLDlg~GtG~l~i~a~~~g-~~~v~~vdi~~~~~~~a~~N~~~~~~~~~~~~~d~~~~~~~fD~Vi~n  116 (201)
T d1wy7a1          46 EGKVVADLGAGTGVLSYGALLLG-AKEVICVEVDKEAVDVLIENLGEFKGKFKVFIGDVSEFNSRVDIVIMN  116 (201)
T ss_dssp             TTCEEEEETCTTCHHHHHHHHTT-CSEEEEEESCHHHHHHHHHHTGGGTTSEEEEESCGGGCCCCCSEEEEC
T ss_pred             CCCEEEECcCcchHHHHHHHHcC-CCEEEEEcCcHHHHHHHHHHHHHcCCCceEEECchhhhCCcCcEEEEc
Confidence            35799999999999999988754 468999999 999888875     367889999986643449999874

>d1u2za_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Catalytic, N-terminal domain of histone methyltransferase Dot1l
domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.12  E-value=9.7e-11  Score=80.17  Aligned_cols=82  Identities=11%  Similarity=0.241  Sum_probs=63.1

Q ss_pred             hhhhHHHHHhhcccCCCCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeeh-HHHHHhCCCC---------------CCe
Q 034578            5 TKITMKAFVSHYKVDGFNNIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDL-QHVIATAPTH---------------EGV   68 (90)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~---------------~rv   68 (90)
                      .-.++..+++.++   +.+..++||||||+|.++..+++.+|..+++|+|+ |.+++.|++.               ...
T Consensus       201 ~~~~i~~Il~~l~---Lkpgd~fLDLGCG~G~~vl~aA~~~g~~~v~GIDiS~~~i~~Ak~~~~e~~~~~~~~g~~~~~~  277 (406)
T d1u2za_         201 LPNFLSDVYQQCQ---LKKGDTFMDLGSGVGNCVVQAALECGCALSFGCEIMDDASDLTILQYEELKKRCKLYGMRLNNV  277 (406)
T ss_dssp             CHHHHHHHHHHTT---CCTTCEEEEESCTTSHHHHHHHHHHCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHTTBCCCCE
T ss_pred             CHHHHHHHHHHhC---CCCCCEEEeCCCCCcHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHHhhhhhhhccccccc
Confidence            3446777888887   77888999999999999999999999889999999 9999888641               233


Q ss_pred             eE-EEecCCCC------CCcccEEEeec
Q 034578           69 SH-VGGDMFDA------IPNADAVFMKV   89 (90)
Q Consensus        69 ~~-~~~d~~~~------~p~~D~i~l~~   89 (90)
                      .+ ..+++++.      ++.+|++++++
T Consensus       278 ~~~~~~~f~~~~~~d~~~~~adVV~inn  305 (406)
T d1u2za_         278 EFSLKKSFVDNNRVAELIPQCDVILVNN  305 (406)
T ss_dssp             EEEESSCSTTCHHHHHHGGGCSEEEECC
T ss_pred             eeeeeechhhccccccccccceEEEEec
Confidence            33 45666652      33478888753

>d2b25a1 c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein FLJ20628
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.09  E-value=2.1e-10  Score=76.51  Aligned_cols=76  Identities=21%  Similarity=0.298  Sum_probs=62.0

Q ss_pred             HHHHHhhcccCCCCCCCeEEEecCCchHHHHHHHHH-CCCCeEEEeeh-HHHHHhCCC-----------------CCCee
Q 034578            9 MKAFVSHYKVDGFNNIRSMVDVGGGTGTVLAEIVKS-YPHIKGINFDL-QHVIATAPT-----------------HEGVS   69 (90)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~-~p~~~~~~~D~-p~~~~~a~~-----------------~~rv~   69 (90)
                      +..|+..++   ..+..+|||+|||+|.++..|++. .|+.+++.+|+ +++++.|++                 .+++.
T Consensus        87 ~~~Il~~l~---i~pG~rVLE~GtGsG~lt~~LAr~vg~~G~V~t~E~~~~~~~~A~~n~~~~~~~~~~~~~~~~~~nv~  163 (324)
T d2b25a1          87 INMILSMMD---INPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDNVD  163 (324)
T ss_dssp             HHHHHHHHT---CCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCCCCEE
T ss_pred             HHHHHHHhC---CCCCCEEEEecccccHHHHHHHHHhCCCcEEEEecCCHHHHHHHHHHHHHhhhhhhhhhhhcccccee
Confidence            456677777   778899999999999999999998 68999999999 998888764                 26899


Q ss_pred             EEEecCCCC---CCc--ccEEEe
Q 034578           70 HVGGDMFDA---IPN--ADAVFM   87 (90)
Q Consensus        70 ~~~~d~~~~---~p~--~D~i~l   87 (90)
                      +..+|+.+.   ++.  +|.|++
T Consensus       164 ~~~~di~~~~~~~~~~~fD~V~L  186 (324)
T d2b25a1         164 FIHKDISGATEDIKSLTFDAVAL  186 (324)
T ss_dssp             EEESCTTCCC-------EEEEEE
T ss_pred             EEecchhhcccccCCCCcceEee
Confidence            999998762   332  899886

>d2fyta1 c.66.1.6 (A:238-548) Protein arginine N-methyltransferase 3, PRMT3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Protein arginine N-methyltransferase 3, PRMT3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.09  E-value=2.5e-10  Score=75.06  Aligned_cols=75  Identities=16%  Similarity=0.253  Sum_probs=55.5

Q ss_pred             HHHHhhcccCCCCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeeh-HHHHHhCC------CCCCeeEEEecCCC-CCC-
Q 034578           10 KAFVSHYKVDGFNNIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDL-QHVIATAP------THEGVSHVGGDMFD-AIP-   80 (90)
Q Consensus        10 ~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~------~~~rv~~~~~d~~~-~~p-   80 (90)
                      +++.+...   ..+..+|||||||+|.++..++++.+ .+++++|. +.+....+      ..++++++.+|..+ +.| 
T Consensus        25 ~ai~~~~~---~~~~~~VLDiGcG~G~lsl~aa~~Ga-~~V~aid~s~~~~~a~~~~~~~~~~~~i~~~~~~~~~l~~~~  100 (311)
T d2fyta1          25 DFIYQNPH---IFKDKVVLDVGCGTGILSMFAAKAGA-KKVLGVDQSEILYQAMDIIRLNKLEDTITLIKGKIEEVHLPV  100 (311)
T ss_dssp             HHHHHCGG---GTTTCEEEEETCTTSHHHHHHHHTTC-SEEEEEESSTHHHHHHHHHHHTTCTTTEEEEESCTTTSCCSC
T ss_pred             HHHHhccc---cCCcCEEEEECCCCCHHHHHHHHcCC-CEEEEEeCHHHHHHHHHHHHHhCCCccceEEEeeHHHhcCcc
Confidence            44544444   44568999999999999999999754 58999998 66543221      14789999999988 554 


Q ss_pred             -cccEEEee
Q 034578           81 -NADAVFMK   88 (90)
Q Consensus        81 -~~D~i~l~   88 (90)
                       .+|+|+..
T Consensus       101 ~~~D~Ivse  109 (311)
T d2fyta1         101 EKVDVIISE  109 (311)
T ss_dssp             SCEEEEEEC
T ss_pred             ccceEEEEe
Confidence             39999864

>d2esra1 c.66.1.46 (A:28-179) Putative methyltransferase SPy1538 {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Putative methyltransferase SPy1538
species: Streptococcus pyogenes [TaxId: 1314]

Probab=99.07  E-value=7.2e-11  Score=70.83  Aligned_cols=65  Identities=17%  Similarity=0.141  Sum_probs=53.2

Q ss_pred             CCCeEEEecCCchHHHHHHHHHCCCCeEEEeeh-HHHHHhCCC-------CCCeeEEEecCCCC----CCcccEEEee
Q 034578           23 NIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDL-QHVIATAPT-------HEGVSHVGGDMFDA----IPNADAVFMK   88 (90)
Q Consensus        23 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~-------~~rv~~~~~d~~~~----~p~~D~i~l~   88 (90)
                      +..+|||+|||+|.++++.+.+.. .+++++|. |.+++.+++       .++++++.+|.++.    ...||+|++.
T Consensus        14 ~g~~vlDl~~GtG~~~iea~~rga-~~v~~ve~~~~a~~~~~~n~~~~~~~~~~~ii~~D~~~~l~~~~~~fDiIf~D   90 (152)
T d2esra1          14 NGGRVLDLFAGSGGLAIEAVSRGM-SAAVLVEKNRKAQAIIQDNIIMTKAENRFTLLKMEAERAIDCLTGRFDLVFLD   90 (152)
T ss_dssp             CSCEEEEETCTTCHHHHHHHHTTC-CEEEEECCCHHHHHHHHHHHHTTTCGGGEEEECSCHHHHHHHBCSCEEEEEEC
T ss_pred             CCCeEEEcCCccCHHHHHHHHhCc-ceeeeehhchhhhhhhhhhhhhcccccchhhhcccccccccccccccceeEec
Confidence            467999999999999999988765 48999999 999887765       37799999998762    2239999873

>d1m6ya2 c.66.1.23 (A:2-114,A:216-294) TM0872, methyltransferase domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: MraW-like putative methyltransferases
domain: TM0872, methyltransferase domain
species: Thermotoga maritima [TaxId: 2336]

Probab=99.07  E-value=1.6e-10  Score=72.07  Aligned_cols=77  Identities=18%  Similarity=0.294  Sum_probs=63.9

Q ss_pred             hHHHHHhhcccCCCCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeeh-HHHHHhCCC-----CCCeeEEEecCCC----
Q 034578            8 TMKAFVSHYKVDGFNNIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDL-QHVIATAPT-----HEGVSHVGGDMFD----   77 (90)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~-----~~rv~~~~~d~~~----   77 (90)
                      +.+.+++.+.   ..+...++|++||+|.++..+++++|+.+++++|. |.+++.+++     ..|++++.++|.+    
T Consensus        11 ll~evi~~l~---~~~~~~~lD~t~G~Gghs~~il~~~~~~~vi~~D~d~~~l~~a~~~l~~~~~r~~~~~~~f~~~~~~   87 (192)
T d1m6ya2          11 MVREVIEFLK---PEDEKIILDCTVGEGGHSRAILEHCPGCRIIGIDVDSEVLRIAEEKLKEFSDRVSLFKVSYREADFL   87 (192)
T ss_dssp             THHHHHHHHC---CCTTCEEEETTCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTGGGTTTEEEEECCGGGHHHH
T ss_pred             HHHHHHHhhC---CCCCCEEEEecCCCcHHHHHHHhcCCCCeEEEeechHHHHHHHHHhhccccccccchhHHHhhHHHH
Confidence            3456777776   56778999999999999999999999999999999 999998875     4789999999865    


Q ss_pred             --CC--CcccEEEe
Q 034578           78 --AI--PNADAVFM   87 (90)
Q Consensus        78 --~~--p~~D~i~l   87 (90)
                        ..  ..+|.|++
T Consensus        88 ~~~~~~~~vdgIl~  101 (192)
T d1m6ya2          88 LKTLGIEKVDGILM  101 (192)
T ss_dssp             HHHTTCSCEEEEEE
T ss_pred             HHHcCCCCcceeee
Confidence              12  23788775

>d1g6q1_ c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Arginine methyltransferase, HMT1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.06  E-value=1.5e-10  Score=76.77  Aligned_cols=65  Identities=23%  Similarity=0.346  Sum_probs=50.8

Q ss_pred             CCCeEEEecCCchHHHHHHHHHCCCCeEEEeehHHHHHhCCC-------CCCeeEEEecCCC-CCCc--ccEEEee
Q 034578           23 NIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDLQHVIATAPT-------HEGVSHVGGDMFD-AIPN--ADAVFMK   88 (90)
Q Consensus        23 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~p~~~~~a~~-------~~rv~~~~~d~~~-~~p~--~D~i~l~   88 (90)
                      +..+|||||||+|.++..++++. ..+++++|..++++.+++       .++++++.+|+.+ ++|.  +|+|+..
T Consensus        38 ~~~~VLDlGcGtG~ls~~aa~~G-a~~V~avd~s~~~~~a~~~~~~~~~~~~i~~i~~~~~~l~~~~~~~D~i~se  112 (328)
T d1g6q1_          38 KDKIVLDVGCGTGILSMFAAKHG-AKHVIGVDMSSIIEMAKELVELNGFSDKITLLRGKLEDVHLPFPKVDIIISE  112 (328)
T ss_dssp             TTCEEEEETCTTSHHHHHHHHTC-CSEEEEEESSTHHHHHHHHHHHTTCTTTEEEEESCTTTSCCSSSCEEEEEEC
T ss_pred             CcCEEEEeCCCCCHHHHHHHHhC-CCEEEEEeCCHHHHHHHHHHHHhCccccceEEEeehhhccCcccceeEEEEE
Confidence            46799999999999999888864 348999998445555543       4789999999988 6653  8999864

>d1jg1a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=99.05  E-value=2e-10  Score=72.70  Aligned_cols=76  Identities=16%  Similarity=0.205  Sum_probs=61.9

Q ss_pred             HHHHHhhcccCCCCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeeh-HHHHHhCCC------CCCeeEEEecCCCCCC-
Q 034578            9 MKAFVSHYKVDGFNNIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDL-QHVIATAPT------HEGVSHVGGDMFDAIP-   80 (90)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~------~~rv~~~~~d~~~~~p-   80 (90)
                      ...+++.++   ..+..+|||||||+|+.+.-+++.. +.+++.+|. +++++.+++      ..++.++.+|..+.+| 
T Consensus        67 ~a~ml~~L~---l~~g~~VLeIGsGsGY~taila~l~-g~~V~~ie~~~~l~~~a~~~l~~~g~~nv~~~~gd~~~g~~~  142 (215)
T d1jg1a_          67 VAIMLEIAN---LKPGMNILEVGTGSGWNAALISEIV-KTDVYTIERIPELVEFAKRNLERAGVKNVHVILGDGSKGFPP  142 (215)
T ss_dssp             HHHHHHHHT---CCTTCCEEEECCTTSHHHHHHHHHH-CSCEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCGG
T ss_pred             HHHHHHhhc---cCccceEEEecCCCChhHHHHHHhh-CceeEEEeccHHHHHHHHHHHHHcCCceeEEEECccccCCcc
Confidence            456677777   7788999999999999999888764 356899998 888888875      3889999999988544 


Q ss_pred             --cccEEEee
Q 034578           81 --NADAVFMK   88 (90)
Q Consensus        81 --~~D~i~l~   88 (90)
                        .||.|++.
T Consensus       143 ~~pfD~Iiv~  152 (215)
T d1jg1a_         143 KAPYDVIIVT  152 (215)
T ss_dssp             GCCEEEEEEC
T ss_pred             cCcceeEEee
Confidence              28999874

>d1oria_ c.66.1.6 (A:) Protein arginine N-methyltransferase 1, PRMT1 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Protein arginine N-methyltransferase 1, PRMT1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.03  E-value=1.9e-10  Score=75.96  Aligned_cols=64  Identities=22%  Similarity=0.295  Sum_probs=49.2

Q ss_pred             CCCeEEEecCCchHHHHHHHHHCCCCeEEEeeh-HHHHHhCCC-------CCCeeEEEecCCC-CCC--cccEEEee
Q 034578           23 NIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDL-QHVIATAPT-------HEGVSHVGGDMFD-AIP--NADAVFMK   88 (90)
Q Consensus        23 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~-------~~rv~~~~~d~~~-~~p--~~D~i~l~   88 (90)
                      +..+|||||||+|.++..++++.+ .+++++|. |.+ ..+++       .++++++.+|..+ +.|  .+|+|+..
T Consensus        33 ~~~~VLDiGcG~G~ls~~aa~~Ga-~~V~avd~s~~~-~~a~~~~~~n~~~~~v~~~~~~~~~~~~~~~~~D~ivs~  107 (316)
T d1oria_          33 KDKVVLDVGSGTGILCMFAAKAGA-RKVIGIECSSIS-DYAVKIVKANKLDHVVTIIKGKVEEVELPVEKVDIIISE  107 (316)
T ss_dssp             TTCEEEEETCTTSHHHHHHHHTTC-SEEEEEECSTTH-HHHHHHHHHTTCTTTEEEEESCTTTCCCSSSCEEEEEEC
T ss_pred             CcCEEEEEecCCcHHHHHHHHhCC-CEEEEEcCcHHH-hhhhhHHHHhCCccccceEeccHHHcccccceeEEEeee
Confidence            467899999999999999888754 47999998 543 22221       4789999999988 555  38999764

>d1r18a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.02  E-value=4.6e-10  Score=71.26  Aligned_cols=79  Identities=14%  Similarity=0.184  Sum_probs=60.5

Q ss_pred             HHHHHhhcccCCCCCCCeEEEecCCchHHHHHHHHH------CCCCeEEEeeh-HHHHHhCCC-----------CCCeeE
Q 034578            9 MKAFVSHYKVDGFNNIRSMVDVGGGTGTVLAEIVKS------YPHIKGINFDL-QHVIATAPT-----------HEGVSH   70 (90)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~------~p~~~~~~~D~-p~~~~~a~~-----------~~rv~~   70 (90)
                      ...+++.+.. .+.+..+|||||||+|+++.-+++.      .+..+++.+|. +++++.|++           ..++.+
T Consensus        67 ~a~~l~~L~~-~l~~g~~VLeIGtGsGY~ta~la~l~g~~g~~~~~~V~~iE~~~~l~~~a~~~l~~~~~~~~~~~nv~~  145 (223)
T d1r18a_          67 HAFALEYLRD-HLKPGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSMLDSGQLLI  145 (223)
T ss_dssp             HHHHHHHTTT-TCCTTCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHHHHHHTSEEE
T ss_pred             HHHHHHHHhh-ccCCCCeEEEecCCCCHHHHHHHHHhhhccCCcccEEEEEecCHHHHHHHHHhhhhcchhhcCccEEEE
Confidence            3456666621 1667889999999999998888775      34568999999 998888865           258999


Q ss_pred             EEecCCCCCC---cccEEEee
Q 034578           71 VGGDMFDAIP---NADAVFMK   88 (90)
Q Consensus        71 ~~~d~~~~~p---~~D~i~l~   88 (90)
                      +.+|..+..+   .||.|++.
T Consensus       146 ~~~d~~~~~~~~~~fD~Iiv~  166 (223)
T d1r18a_         146 VEGDGRKGYPPNAPYNAIHVG  166 (223)
T ss_dssp             EESCGGGCCGGGCSEEEEEEC
T ss_pred             EecccccccccccceeeEEEE
Confidence            9999987443   39999874

>d2frna1 c.66.1.47 (A:19-278) Hypothetical protein PH0793 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Met-10+ protein-like
domain: Hypothetical protein PH0793
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.02  E-value=1.9e-10  Score=74.59  Aligned_cols=66  Identities=20%  Similarity=0.114  Sum_probs=55.9

Q ss_pred             CCCCeEEEecCCchHHHHHHHHHCCCCeEEEeeh-HHHHHhCCC-------CCCeeEEEecCCCCCCc--ccEEEee
Q 034578           22 NNIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDL-QHVIATAPT-------HEGVSHVGGDMFDAIPN--ADAVFMK   88 (90)
Q Consensus        22 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~-------~~rv~~~~~d~~~~~p~--~D~i~l~   88 (90)
                      .+..+|||+|||+|.+++.++++ +..+++++|+ |.+++.+++       .++++++.+|.++-.++  +|.|+|.
T Consensus       106 ~~g~~VlD~~aG~G~~~l~~a~~-~~~~V~avd~n~~a~~~~~~N~~~n~l~~~v~~~~~D~~~~~~~~~~D~Ii~~  181 (260)
T d2frna1         106 KPDELVVDMFAGIGHLSLPIAVY-GKAKVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFPGENIADRILMG  181 (260)
T ss_dssp             CTTCEEEETTCTTTTTHHHHHHH-TCCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTCCCCSCEEEEEEC
T ss_pred             CCccEEEECcceEcHHHHHHHHh-CCcEEEEecCCHHHHHHHHHHHHHhCCCceEEEEEcchHHhccCCCCCEEEEC
Confidence            35789999999999999999987 4579999999 999988875       36899999999884433  9999885

>d1xvaa_ c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Glycine N-methyltransferase
domain: Glycine N-methyltransferase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.98  E-value=1.9e-10  Score=74.79  Aligned_cols=73  Identities=15%  Similarity=0.151  Sum_probs=52.2

Q ss_pred             HHHHhhcccCCCCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeeh-HHHHHhCCCC----------CCeeEEEecCCC-
Q 034578           10 KAFVSHYKVDGFNNIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDL-QHVIATAPTH----------EGVSHVGGDMFD-   77 (90)
Q Consensus        10 ~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~----------~rv~~~~~d~~~-   77 (90)
                      +.+.+.++   ..+..+|||+|||+|.++..|+++  +.+++++|+ |.|++.|++.          .+..+...|+.. 
T Consensus        46 ~~l~~~l~---~~~~~~vLD~GcG~G~~~~~la~~--g~~v~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~~~~~~~~~  120 (292)
T d1xvaa_          46 AWLLGLLR---QHGCHRVLDVACGTGVDSIMLVEE--GFSVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANWLTL  120 (292)
T ss_dssp             HHHHHHHH---HTTCCEEEESSCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHTTTSHHHHTCEEEECCGGGH
T ss_pred             HHHHHHhh---hcCCCEEEEecCCCcHHHHHHHHc--CCeeeeccCchHHHHHHHHHHHhcccccccceeeeeecccccc
Confidence            34444444   344679999999999999999987  578999999 9999988641          234455566653 


Q ss_pred             ----CCC-cccEEEe
Q 034578           78 ----AIP-NADAVFM   87 (90)
Q Consensus        78 ----~~p-~~D~i~l   87 (90)
                          +.. .+|+|++
T Consensus       121 ~~~~~~~~~fd~v~~  135 (292)
T d1xvaa_         121 DKDVPAGDGFDAVIC  135 (292)
T ss_dssp             HHHSCCTTCEEEEEE
T ss_pred             ccccCCCCCceEEEE
Confidence                122 3898875

>d1qama_ c.66.1.24 (A:) rRNA adenine dimethylase {Bacillus subtilis, Ermc' [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: rRNA adenine dimethylase
species: Bacillus subtilis, Ermc' [TaxId: 1423]

Probab=98.98  E-value=8.7e-10  Score=70.48  Aligned_cols=79  Identities=14%  Similarity=0.328  Sum_probs=61.4

Q ss_pred             hhhHHHHHhhcccCCCCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeeh-HHHHHhCC----CCCCeeEEEecCCC-CC
Q 034578            6 KITMKAFVSHYKVDGFNNIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDL-QHVIATAP----THEGVSHVGGDMFD-AI   79 (90)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~----~~~rv~~~~~d~~~-~~   79 (90)
                      ..+++.+++..+   ..+..+||+||||+|.++..|++..  .+++++|+ +.+++..+    ..++++++.+|+++ ++
T Consensus         7 ~~i~~~iv~~~~---~~~~d~VlEIGpG~G~LT~~Ll~~~--~~v~avE~D~~l~~~l~~~~~~~~n~~i~~~D~l~~~~   81 (235)
T d1qama_           7 KHNIDKIMTNIR---LNEHDNIFEIGSGKGHFTLELVQRC--NFVTAIEIDHKLCKTTENKLVDHDNFQVLNKDILQFKF   81 (235)
T ss_dssp             HHHHHHHHTTCC---CCTTCEEEEECCTTSHHHHHHHHHS--SEEEEECSCHHHHHHHHHHTTTCCSEEEECCCGGGCCC
T ss_pred             HHHHHHHHHhcC---CCCCCeEEEECCCchHHHHHHHhCc--CceEEEeeccchHHHHHHHhhcccchhhhhhhhhhccc
Confidence            446778888887   6788999999999999999999984  56888888 77776554    35899999999998 56


Q ss_pred             Cc-ccEEEeec
Q 034578           80 PN-ADAVFMKV   89 (90)
Q Consensus        80 p~-~D~i~l~~   89 (90)
                      +. -...+.++
T Consensus        82 ~~~~~~~vv~N   92 (235)
T d1qama_          82 PKNQSYKIFGN   92 (235)
T ss_dssp             CSSCCCEEEEE
T ss_pred             cccccceeeee
Confidence            64 34444454

>d1g8aa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=98.95  E-value=2.1e-09  Score=68.39  Aligned_cols=82  Identities=16%  Similarity=0.164  Sum_probs=61.5

Q ss_pred             hhhHHHHHhhcccCCCCCCCeEEEecCCchHHHHHHHHHC-CCCeEEEeeh-HHHHHhCCC----CCCeeEEEecCCCC-
Q 034578            6 KITMKAFVSHYKVDGFNNIRSMVDVGGGTGTVLAEIVKSY-PHIKGINFDL-QHVIATAPT----HEGVSHVGGDMFDA-   78 (90)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~-p~~~~~~~D~-p~~~~~a~~----~~rv~~~~~d~~~~-   78 (90)
                      ..++..++..++...+.+..+|||+|||+|.++..+++.. |..+++++|+ |.+++.+++    ..++..+.+|...+ 
T Consensus        56 SKlaa~i~~~l~~l~i~pG~~VLDlGaGsG~~t~~la~~VG~~G~V~aVD~s~~~l~~a~~~a~~~~~~~~i~~d~~~~~  135 (227)
T d1g8aa_          56 SKLGAAIMNGLKNFPIKPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEERRNIVPILGDATKPE  135 (227)
T ss_dssp             CHHHHHHHTTCCCCCCCTTCEEEEETTTSTTHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHSSCTTEEEEECCTTCGG
T ss_pred             cHHHHHHHccccccccCCCCEEEEeccCCCHHHHHHHHHhCCCCEEEEEeCcHHHHHHHHHHHHhcCCceEEEEECCCcc
Confidence            3456677766653226677899999999999999999985 8999999999 998886643    46777788877552 


Q ss_pred             -C----CcccEEEe
Q 034578           79 -I----PNADAVFM   87 (90)
Q Consensus        79 -~----p~~D~i~l   87 (90)
                       .    +.+|+++.
T Consensus       136 ~~~~~~~~vD~i~~  149 (227)
T d1g8aa_         136 EYRALVPKVDVIFE  149 (227)
T ss_dssp             GGTTTCCCEEEEEE
T ss_pred             cccccccceEEEEE
Confidence             1    22677764

>d1jqea_ c.66.1.19 (A:) Histamine methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Histamine methyltransferase
domain: Histamine methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.90  E-value=4.9e-10  Score=72.24  Aligned_cols=68  Identities=19%  Similarity=0.280  Sum_probs=44.4

Q ss_pred             CCCeEEEecCCchHHHHHHHH----HCCCC--eEEEeeh-HHHHHhCCC----C---CCeeE--EEecC-------CCCC
Q 034578           23 NIRSMVDVGGGTGTVLAEIVK----SYPHI--KGINFDL-QHVIATAPT----H---EGVSH--VGGDM-------FDAI   79 (90)
Q Consensus        23 ~~~~vlDvG~G~G~~~~~l~~----~~p~~--~~~~~D~-p~~~~~a~~----~---~rv~~--~~~d~-------~~~~   79 (90)
                      +..+|||||||+|.++..+++    .+|..  +++++|. +.+++.+++    .   .++.+  ...++       ..+.
T Consensus        40 ~~~~VLDiGcG~G~~~~~ll~~l~~~~~~~~~~~~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  119 (280)
T d1jqea_          40 SEIKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKISNLENVKFAWHKETSSEYQSRMLEKK  119 (280)
T ss_dssp             SEEEEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECCCHHHHHHHHHHHTTCCSCTTEEEEEECSCHHHHHHHHTTSS
T ss_pred             CCCeEEEEcCCCCHHHHHHHHHhhhhccCCceEEEEEeCcHHHHHHHHHHHhhccccccccccchhhhhhhhcchhcccC
Confidence            344799999999998776654    45554  5799998 888887754    1   33333  22222       1222


Q ss_pred             C--cccEEEeecC
Q 034578           80 P--NADAVFMKVA   90 (90)
Q Consensus        80 p--~~D~i~l~~v   90 (90)
                      +  .||+|++.++
T Consensus       120 ~~~~fD~I~~~~~  132 (280)
T d1jqea_         120 ELQKWDFIHMIQM  132 (280)
T ss_dssp             SCCCEEEEEEESC
T ss_pred             CCCceeEEEEccc
Confidence            2  2999998764

>d1yuba_ c.66.1.24 (A:) rRNA adenine dimethylase {Streptococcus pneumoniae, Ermam [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: rRNA adenine dimethylase
species: Streptococcus pneumoniae, Ermam [TaxId: 1313]

Probab=98.88  E-value=5.1e-10  Score=72.01  Aligned_cols=79  Identities=13%  Similarity=0.324  Sum_probs=62.7

Q ss_pred             hhhHHHHHhhcccCCCCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeeh-HHHHHhCCC----CCCeeEEEecCCC-CC
Q 034578            6 KITMKAFVSHYKVDGFNNIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDL-QHVIATAPT----HEGVSHVGGDMFD-AI   79 (90)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~----~~rv~~~~~d~~~-~~   79 (90)
                      ..+.+.+++..+   ..+..+||+||||+|.++..|++..  .+++++|+ +.+++.+++    .++++++.+|+++ ++
T Consensus        15 ~~ii~kIv~~~~---~~~~d~VLEIGpG~G~LT~~L~~~~--~~v~aIE~D~~l~~~l~~~~~~~~n~~ii~~D~l~~~~   89 (245)
T d1yuba_          15 EKVLNQIIKQLN---LKETDTVYEIGTGKGHLTTKLAKIS--KQVTSIELDSHLFNLSSEKLKLNTRVTLIHQDILQFQF   89 (245)
T ss_dssp             TTTHHHHHHHCC---CCSSEEEEECSCCCSSCSHHHHHHS--SEEEESSSSCSSSSSSSCTTTTCSEEEECCSCCTTTTC
T ss_pred             HHHHHHHHHhcC---CCCCCeEEEECCCccHHHHHHHhhc--CceeEeeecccchhhhhhhhhhccchhhhhhhhhcccc
Confidence            345788888887   6678899999999999999999984  57899998 888877765    3789999999998 66


Q ss_pred             Cc-ccEEEeec
Q 034578           80 PN-ADAVFMKV   89 (90)
Q Consensus        80 p~-~D~i~l~~   89 (90)
                      +. -+..++++
T Consensus        90 ~~~~~~~vv~N  100 (245)
T d1yuba_          90 PNKQRYKIVGN  100 (245)
T ss_dssp             CCSSEEEEEEE
T ss_pred             ccceeeeEeee
Confidence            64 33444444

>d1ws6a1 c.66.1.46 (A:15-185) Methyltransferase TTHA0928 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Methyltransferase TTHA0928
species: Thermus thermophilus [TaxId: 274]

Probab=98.76  E-value=2.6e-09  Score=65.04  Aligned_cols=63  Identities=14%  Similarity=0.127  Sum_probs=47.9

Q ss_pred             CCCeEEEecCCchHHHHHHHHHCCCCeEEEeeh-HHHHHhCCC-------CCCeeEEEecCCC---C-C-CcccEEEe
Q 034578           23 NIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDL-QHVIATAPT-------HEGVSHVGGDMFD---A-I-PNADAVFM   87 (90)
Q Consensus        23 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~-------~~rv~~~~~d~~~---~-~-p~~D~i~l   87 (90)
                      ...+|||+|||+|.++++.+++  .++++++|. |.+++.+++       ..++....+|.+.   . . ..||+|++
T Consensus        41 ~g~~vLDl~~G~G~~~i~a~~~--ga~vv~vD~~~~a~~~~~~N~~~~~~~~~v~~~~~d~~~~~~~~~~~~fD~If~  116 (171)
T d1ws6a1          41 RRGRFLDPFAGSGAVGLEAASE--GWEAVLVEKDPEAVRLLKENVRRTGLGARVVALPVEVFLPEAKAQGERFTVAFM  116 (171)
T ss_dssp             TCCEEEEETCSSCHHHHHHHHT--TCEEEEECCCHHHHHHHHHHHHHHTCCCEEECSCHHHHHHHHHHTTCCEEEEEE
T ss_pred             CCCeEEEeccccchhhhhhhhc--cchhhhcccCHHHHhhhhHHHHhhccccceeeeehhcccccccccCCccceeEE
Confidence            5679999999999999998887  468889999 999988875       2456555555442   1 1 23899987

>d2fpoa1 c.66.1.46 (A:10-192) Methylase YhhF {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Methylase YhhF
species: Escherichia coli [TaxId: 562]

Probab=98.75  E-value=2.6e-09  Score=65.64  Aligned_cols=63  Identities=14%  Similarity=0.165  Sum_probs=51.6

Q ss_pred             CCeEEEecCCchHHHHHHHHHCCCCeEEEeeh-HHHHHhCCC------CCCeeEEEecCCCC---CC-cccEEEe
Q 034578           24 IRSMVDVGGGTGTVLAEIVKSYPHIKGINFDL-QHVIATAPT------HEGVSHVGGDMFDA---IP-NADAVFM   87 (90)
Q Consensus        24 ~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~------~~rv~~~~~d~~~~---~p-~~D~i~l   87 (90)
                      ..++||++||||.++.+.+.+... +++.+|. +.+++.+++      ..+++++.+|.++.   .. .||+|++
T Consensus        44 ~~~vLDlfaGsG~~giealsrGa~-~v~~VE~~~~a~~~~k~N~~~~~~~~~~ii~~d~~~~l~~~~~~fDlIf~  117 (183)
T d2fpoa1          44 DAQCLDCFAGSGALGLEALSRYAA-GATLIEMDRAVSQQLIKNLATLKAGNARVVNSNAMSFLAQKGTPHNIVFV  117 (183)
T ss_dssp             TCEEEETTCTTCHHHHHHHHTTCS-EEEEECSCHHHHHHHHHHHHHTTCCSEEEECSCHHHHHSSCCCCEEEEEE
T ss_pred             hhhhhhhhccccceeeeEEecCcc-eeEEEEEeechhhHHHHHHhhccccceeeeeecccccccccccccCEEEE
Confidence            478999999999999999988653 7999999 898887765      36789999998762   22 3999987

>d1uira_ c.66.1.17 (A:) Spermidine synthase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thermus thermophilus [TaxId: 274]

Probab=98.72  E-value=7.2e-09  Score=68.56  Aligned_cols=65  Identities=23%  Similarity=0.303  Sum_probs=56.3

Q ss_pred             CCCeEEEecCCchHHHHHHHHHCCCCeEEEeeh-HHHHHhCCC-----------CCCeeEEEecCCCC---CCc-ccEEE
Q 034578           23 NIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDL-QHVIATAPT-----------HEGVSHVGGDMFDA---IPN-ADAVF   86 (90)
Q Consensus        23 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~-----------~~rv~~~~~d~~~~---~p~-~D~i~   86 (90)
                      .+++||.||+|.|..+.++++..|..+++.+|+ |.+++.+++           .+|++++.+|..+.   .+. ||+|+
T Consensus        77 ~pk~VLiiG~G~G~~~~~ll~~~~~~~v~~VEiD~~Vi~~a~~~f~~~~~~~~~d~rv~i~~~Da~~~l~~~~~~yDvIi  156 (312)
T d1uira_          77 EPKRVLIVGGGEGATLREVLKHPTVEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDDARAYLERTEERYDVVI  156 (312)
T ss_dssp             CCCEEEEEECTTSHHHHHHTTSTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCHHHHHHHCCCCEEEEE
T ss_pred             CcceEEEeCCCchHHHHHHHhcCCcceEEEecCCHHHHHHHHhcCcccccCccCCCceEEEEchHHHHhhhcCCcccEEE
Confidence            578999999999999999999888889999999 999987764           47999999998872   343 99998


Q ss_pred             e
Q 034578           87 M   87 (90)
Q Consensus        87 l   87 (90)
                      +
T Consensus       157 ~  157 (312)
T d1uira_         157 I  157 (312)
T ss_dssp             E
T ss_pred             E
Confidence            5

>d2as0a2 c.66.1.51 (A:73-396) Hypothetical protein PH1915, middle and C-terminal domains {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein PH1915, middle and C-terminal domains
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=98.68  E-value=1.4e-08  Score=67.30  Aligned_cols=64  Identities=20%  Similarity=0.193  Sum_probs=53.2

Q ss_pred             CCCeEEEecCCchHHHHHHHHHCCCCeEEEeeh-HHHHHhCCC-------CCCeeEEEecCCCC---C---C-cccEEEe
Q 034578           23 NIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDL-QHVIATAPT-------HEGVSHVGGDMFDA---I---P-NADAVFM   87 (90)
Q Consensus        23 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~-------~~rv~~~~~d~~~~---~---p-~~D~i~l   87 (90)
                      +..+|||+|||+|.+++.+++... .+++++|+ +.+++.+++       .++++++.+|.++.   +   . .||+|++
T Consensus       145 ~g~~VLDl~~g~G~~si~~a~~ga-~~V~~vD~s~~al~~a~~N~~~ngl~~~~~~~~~d~~~~~~~~~~~~~~fD~Vi~  223 (324)
T d2as0a2         145 PGDRVLDVFTYTGGFAIHAAIAGA-DEVIGIDKSPRAIETAKENAKLNGVEDRMKFIVGSAFEEMEKLQKKGEKFDIVVL  223 (324)
T ss_dssp             TTCEEEETTCTTTHHHHHHHHTTC-SEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHTTCCEEEEEE
T ss_pred             CCCeeecccCcccchhhhhhhcCC-cEEEeecCCHHHHHHHHHHHHHcCCCccceeeechhhhhhHHHHhccCCCCchhc
Confidence            568999999999999999998753 48999999 999998876       26899999998862   1   2 3899997

>d2igta1 c.66.1.51 (A:1-309) Putative methyltransferase Atu0340 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Putative methyltransferase Atu0340
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=98.66  E-value=8.7e-09  Score=68.17  Aligned_cols=65  Identities=14%  Similarity=0.135  Sum_probs=53.6

Q ss_pred             CCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeeh-HHHHHhCCC--------CCCeeEEEecCCCCC-------CcccE
Q 034578           21 FNNIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDL-QHVIATAPT--------HEGVSHVGGDMFDAI-------PNADA   84 (90)
Q Consensus        21 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~--------~~rv~~~~~d~~~~~-------p~~D~   84 (90)
                      ..+..+|||+.||+|.++..+++.  .++++.+|. +.+++.|++        ..+++|+.+|.++.+       ..||+
T Consensus       130 ~~~~~rVLdlf~~tG~~sl~aa~~--GA~V~~VD~s~~al~~a~~N~~ln~~~~~~~~~i~~D~~~~l~~~~~~~~~fD~  207 (309)
T d2igta1         130 ADRPLKVLNLFGYTGVASLVAAAA--GAEVTHVDASKKAIGWAKENQVLAGLEQAPIRWICEDAMKFIQREERRGSTYDI  207 (309)
T ss_dssp             SSSCCEEEEETCTTCHHHHHHHHT--TCEEEEECSCHHHHHHHHHHHHHHTCTTSCEEEECSCHHHHHHHHHHHTCCBSE
T ss_pred             ccCCCeEEEecCCCcHHHHHHHhC--CCeEEEEeChHHHHHHHHHhhhhhcccCCcEEEEeCCHHHhHHHHhhcCCCCCE
Confidence            345679999999999999999886  468999999 999998876        247999999998632       23899


Q ss_pred             EEe
Q 034578           85 VFM   87 (90)
Q Consensus        85 i~l   87 (90)
                      |++
T Consensus       208 Iil  210 (309)
T d2igta1         208 ILT  210 (309)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            997

>d1iy9a_ c.66.1.17 (A:) Spermidine synthase {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Bacillus subtilis [TaxId: 1423]

Probab=98.66  E-value=2.6e-08  Score=64.81  Aligned_cols=65  Identities=29%  Similarity=0.342  Sum_probs=55.9

Q ss_pred             CCCeEEEecCCchHHHHHHHHHCCCCeEEEeeh-HHHHHhCCC----------CCCeeEEEecCCC---CCCc-ccEEEe
Q 034578           23 NIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDL-QHVIATAPT----------HEGVSHVGGDMFD---AIPN-ADAVFM   87 (90)
Q Consensus        23 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~----------~~rv~~~~~d~~~---~~p~-~D~i~l   87 (90)
                      .+++||-||+|.|..+.++++..|..+++.+|+ |.+++.+++          .+|++++.+|..+   ..+. ||+|++
T Consensus        75 ~p~~vLiiGgG~G~~~~~~l~~~~~~~i~~VEID~~Vi~~a~~~~~~~~~~~~d~r~~i~~~D~~~~l~~~~~~yDvIi~  154 (274)
T d1iy9a_          75 NPEHVLVVGGGDGGVIREILKHPSVKKATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQVDDGFMHIAKSENQYDVIMV  154 (274)
T ss_dssp             SCCEEEEESCTTCHHHHHHTTCTTCSEEEEEESCHHHHHHHHHHCHHHHTTTTSTTEEEEESCSHHHHHTCCSCEEEEEE
T ss_pred             CcceEEecCCCCcHHHHHHHhcCCcceEEEecCCHHHHHHHHHhChhhcccccCCCeEEEechHHHHHhhcCCCCCEEEE
Confidence            578999999999999999999888889999999 999988764          4799999999876   2333 999986

>d1inla_ c.66.1.17 (A:) Spermidine synthase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thermotoga maritima [TaxId: 2336]

Probab=98.63  E-value=2.4e-08  Score=65.57  Aligned_cols=65  Identities=25%  Similarity=0.317  Sum_probs=56.4

Q ss_pred             CCCeEEEecCCchHHHHHHHHHCCCCeEEEeeh-HHHHHhCCC----------CCCeeEEEecCCCC---CCc-ccEEEe
Q 034578           23 NIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDL-QHVIATAPT----------HEGVSHVGGDMFDA---IPN-ADAVFM   87 (90)
Q Consensus        23 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~----------~~rv~~~~~d~~~~---~p~-~D~i~l   87 (90)
                      .+++||-||+|.|..+.++++..|..+++.+|+ |.+++.+++          .+|++++.+|.++.   .+. ||+|++
T Consensus        89 ~pk~VLiiGgG~G~~~r~~l~~~~~~~i~~VEIDp~Vi~~a~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~~~yDvIi~  168 (295)
T d1inla_          89 NPKKVLIIGGGDGGTLREVLKHDSVEKAILCEVDGLVIEAARKYLKQTSCGFDDPRAEIVIANGAEYVRKFKNEFDVIII  168 (295)
T ss_dssp             SCCEEEEEECTTCHHHHHHTTSTTCSEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHGGGCSSCEEEEEE
T ss_pred             CCceEEEecCCchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhhcccccCCCcEEEhhhHHHHHhcCCCCCCEEEE
Confidence            578999999999999999999888889999999 999998865          48999999998763   333 999986

>d2o07a1 c.66.1.17 (A:16-300) Spermidine synthase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.62  E-value=2.7e-08  Score=65.04  Aligned_cols=66  Identities=26%  Similarity=0.397  Sum_probs=56.7

Q ss_pred             CCCCeEEEecCCchHHHHHHHHHCCCCeEEEeeh-HHHHHhCCC----------CCCeeEEEecCCC---CCCc-ccEEE
Q 034578           22 NNIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDL-QHVIATAPT----------HEGVSHVGGDMFD---AIPN-ADAVF   86 (90)
Q Consensus        22 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~----------~~rv~~~~~d~~~---~~p~-~D~i~   86 (90)
                      ..+++||-+|+|.|..+.++++..|..+++.+|+ |.+++.+++          .+|++++.+|..+   ..++ ||+|+
T Consensus        77 ~~pk~vLiiGgG~G~~~~~~l~~~~~~~v~~vEiD~~Vv~~a~~~~~~~~~~~~d~rv~i~~~Da~~~l~~~~~~yDvIi  156 (285)
T d2o07a1          77 PNPRKVLIIGGGDGGVLREVVKHPSVESVVQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLHVGDGFEFMKQNQDAFDVII  156 (285)
T ss_dssp             SSCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHTCSSCEEEEE
T ss_pred             cCcCeEEEeCCCchHHHHHHHHcCCcceeeeccCCHHHHHHHHhhchhhccccCCCCceEEEccHHHHHhcCCCCCCEEE
Confidence            3578999999999999999998878889999999 999998875          4899999999776   2333 99998


Q ss_pred             e
Q 034578           87 M   87 (90)
Q Consensus        87 l   87 (90)
                      +
T Consensus       157 ~  157 (285)
T d2o07a1         157 T  157 (285)
T ss_dssp             E
T ss_pred             E
Confidence            6

>d2fhpa1 c.66.1.46 (A:1-182) Putative methylase EF2452 {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Putative methylase EF2452
species: Enterococcus faecalis [TaxId: 1351]

Probab=98.60  E-value=1.2e-08  Score=62.66  Aligned_cols=78  Identities=15%  Similarity=0.087  Sum_probs=57.8

Q ss_pred             hhHHHHHhhcccCCCCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeeh-HHHHHhCCC-------CCCeeEEEecCCCC
Q 034578            7 ITMKAFVSHYKVDGFNNIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDL-QHVIATAPT-------HEGVSHVGGDMFDA   78 (90)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~-------~~rv~~~~~d~~~~   78 (90)
                      .+-+++...+..  .....+|||++||+|.++.+.+.+.. .+++.+|. +.+++.+++       ..+++++.+|.++.
T Consensus        27 ~vrealFn~l~~--~~~~~~vLDlfaGsG~~g~ea~srGa-~~v~~ve~~~~a~~~~~~N~~~~~~~~~~~i~~~D~~~~  103 (182)
T d2fhpa1          27 KVKESIFNMIGP--YFDGGMALDLYSGSGGLAIEAVSRGM-DKSICIEKNFAALKVIKENIAITKEPEKFEVRKMDANRA  103 (182)
T ss_dssp             HHHHHHHHHHCS--CCSSCEEEETTCTTCHHHHHHHHTTC-SEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHH
T ss_pred             HHHHHHHHHHHH--hcCCCEEEEcccccccccceeeecch-hHHHHHHHHHHHHHHHHHHhhhhhcccccccccccchhh
Confidence            334444444442  33468999999999999999999854 37999999 888888765       25899999998752


Q ss_pred             C------C-cccEEEe
Q 034578           79 I------P-NADAVFM   87 (90)
Q Consensus        79 ~------p-~~D~i~l   87 (90)
                      +      . .||+|++
T Consensus       104 l~~~~~~~~~fDlIfl  119 (182)
T d2fhpa1         104 LEQFYEEKLQFDLVLL  119 (182)
T ss_dssp             HHHHHHTTCCEEEEEE
T ss_pred             hhhhcccCCCcceEEe
Confidence            1      1 3899987

>d2cl5a1 c.66.1.1 (A:3-216) Catechol O-methyltransferase, COMT {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: Catechol O-methyltransferase, COMT
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.54  E-value=3.3e-08  Score=62.06  Aligned_cols=66  Identities=15%  Similarity=0.271  Sum_probs=54.4

Q ss_pred             CCCeEEEecCCchHHHHHHHHHCC-CCeEEEeeh-HHHHHhCCC-------CCCeeEEEecCCCCC---------CcccE
Q 034578           23 NIRSMVDVGGGTGTVLAEIVKSYP-HIKGINFDL-QHVIATAPT-------HEGVSHVGGDMFDAI---------PNADA   84 (90)
Q Consensus        23 ~~~~vlDvG~G~G~~~~~l~~~~p-~~~~~~~D~-p~~~~~a~~-------~~rv~~~~~d~~~~~---------p~~D~   84 (90)
                      ++.+||++|||+|.-+..+++..+ +.+++.+|. |+..+.|++       .++++++.||..+-+         ..+|+
T Consensus        56 kpk~ILEiGt~~G~Sti~la~al~~~g~v~sid~~~~~~~~a~~~~~~~gl~~~i~l~~Gd~~e~l~~l~~~~~~~~~D~  135 (214)
T d2cl5a1          56 SPSLVLELGAYCGYSAVRMARLLQPGARLLTMEMNPDYAAITQQMLNFAGLQDKVTILNGASQDLIPQLKKKYDVDTLDM  135 (214)
T ss_dssp             CCSEEEEECCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHGGGHHHHSCCCCEEE
T ss_pred             CCCEEEEEccCchhHHHHHHHhCCCccEEEEEeccHHHHHHHHHHHHHcCCCccceeeeccccccccchhhcccccccce
Confidence            468999999999999999999875 689999999 888888764       378999999987522         22798


Q ss_pred             EEee
Q 034578           85 VFMK   88 (90)
Q Consensus        85 i~l~   88 (90)
                      +++-
T Consensus       136 ifiD  139 (214)
T d2cl5a1         136 VFLD  139 (214)
T ss_dssp             EEEC
T ss_pred             eeec
Confidence            8864

>d2f8la1 c.66.1.45 (A:2-329) Hypothetical protein Lmo1582 {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N-6 DNA Methylase-like
domain: Hypothetical protein Lmo1582
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.53  E-value=1.1e-07  Score=62.33  Aligned_cols=67  Identities=16%  Similarity=0.253  Sum_probs=53.0

Q ss_pred             CCCCeEEEecCCchHHHHHHHHH-----CCCCeEEEeeh-HHHHHhCCC-----CCCeeEEEecCCCCCC--cccEEEee
Q 034578           22 NNIRSMVDVGGGTGTVLAEIVKS-----YPHIKGINFDL-QHVIATAPT-----HEGVSHVGGDMFDAIP--NADAVFMK   88 (90)
Q Consensus        22 ~~~~~vlDvG~G~G~~~~~l~~~-----~p~~~~~~~D~-p~~~~~a~~-----~~rv~~~~~d~~~~~p--~~D~i~l~   88 (90)
                      ....+|+|.+||+|.++.++.++     .+..+++++|+ |.+++.|+.     ..+..+..+|.+...+  .+|+|+.+
T Consensus       116 ~~~~~vlDp~~GsG~~l~~~~~~l~~~~~~~~~~~g~di~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~fD~vi~N  195 (328)
T d2f8la1         116 KKNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGADLQRQKMTLLHQDGLANLLVDPVDVVISD  195 (328)
T ss_dssp             CSEEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHHHHTCCCEEEESCTTSCCCCCCEEEEEEE
T ss_pred             CCCCEEEeCCCCcchhHHHHHHHHHhccCccceEEEecccHHHHHHHHHHHHHhhhhhhhhccccccccccccccccccC
Confidence            45678999999999999998754     35568999999 988888764     4667888889887433  49999875

>d2b2ca1 c.66.1.17 (A:3-314) Spermidine synthase {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Caenorhabditis elegans [TaxId: 6239]

Probab=98.52  E-value=4.1e-08  Score=64.93  Aligned_cols=65  Identities=26%  Similarity=0.398  Sum_probs=55.6

Q ss_pred             CCCeEEEecCCchHHHHHHHHHCCCCeEEEeeh-HHHHHhCCC----------CCCeeEEEecCCCC---CCc-ccEEEe
Q 034578           23 NIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDL-QHVIATAPT----------HEGVSHVGGDMFDA---IPN-ADAVFM   87 (90)
Q Consensus        23 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~----------~~rv~~~~~d~~~~---~p~-~D~i~l   87 (90)
                      .+++||-||+|.|..+.++++..|..+++.+|+ |.+++.+++          .+|++++.+|..+.   -+. ||+|++
T Consensus       106 ~pk~VLIiGgG~G~~~rellk~~~v~~v~~VEID~~Vv~~a~~~~~~~~~~~~dprv~i~i~Da~~~l~~~~~~yDvII~  185 (312)
T d2b2ca1         106 DPKRVLIIGGGDGGILREVLKHESVEKVTMCEIDEMVIDVAKKFLPGMSCGFSHPKLDLFCGDGFEFLKNHKNEFDVIIT  185 (312)
T ss_dssp             SCCEEEEESCTTSHHHHHHTTCTTCCEEEEECSCHHHHHHHHHHCTTTSGGGGCTTEEEECSCHHHHHHHCTTCEEEEEE
T ss_pred             CCCeEEEeCCCchHHHHHHHHcCCcceEEEEcccHHHHHHHHhhchhhccccCCCCeEEEEchHHHHHHhCCCCCCEEEE
Confidence            578999999999999999999777789999999 999998864          38999999998772   233 999986

>d1xj5a_ c.66.1.17 (A:) Spermidine synthase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=98.52  E-value=7.7e-08  Score=62.96  Aligned_cols=66  Identities=24%  Similarity=0.319  Sum_probs=56.2

Q ss_pred             CCCCeEEEecCCchHHHHHHHHHCCCCeEEEeeh-HHHHHhCCC----------CCCeeEEEecCCC---CCC--cccEE
Q 034578           22 NNIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDL-QHVIATAPT----------HEGVSHVGGDMFD---AIP--NADAV   85 (90)
Q Consensus        22 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~----------~~rv~~~~~d~~~---~~p--~~D~i   85 (90)
                      +.+++||=||+|.|..+.++++..|-.+++.+|+ |.+++.+++          .+|++++.+|.++   ..+  .||+|
T Consensus        79 ~~pk~VLiiGgG~G~~~r~~l~~~~~~~i~~VEiD~~Vi~~~~~~f~~~~~~~~~~r~~i~~~Da~~~l~~~~~~~yDvI  158 (290)
T d1xj5a_          79 PNPKKVLVIGGGDGGVLREVARHASIEQIDMCEIDKMVVDVSKQFFPDVAIGYEDPRVNLVIGDGVAFLKNAAEGSYDAV  158 (290)
T ss_dssp             SCCCEEEEETCSSSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGSTTEEEEESCHHHHHHTSCTTCEEEE
T ss_pred             CCCcceEEecCCchHHHHHHHhcccceeeEEecCCHHHHHHHHHhchhhhccccCCCcEEEEccHHHHHhhccccCccEE
Confidence            3578999999999999999999878778999999 999998865          4899999999765   233  39999


Q ss_pred             Ee
Q 034578           86 FM   87 (90)
Q Consensus        86 ~l   87 (90)
                      ++
T Consensus       159 i~  160 (290)
T d1xj5a_         159 IV  160 (290)
T ss_dssp             EE
T ss_pred             EE
Confidence            85

>d1uwva2 c.66.1.40 (A:75-432) rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: (Uracil-5-)-methyltransferase
domain: rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain
species: Escherichia coli [TaxId: 562]

Probab=98.50  E-value=1.3e-07  Score=62.68  Aligned_cols=77  Identities=8%  Similarity=0.135  Sum_probs=59.7

Q ss_pred             hhhHHHHHhhcccCCCCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeeh-HHHHHhCCC------CCCeeEEEecCCCC
Q 034578            6 KITMKAFVSHYKVDGFNNIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDL-QHVIATAPT------HEGVSHVGGDMFDA   78 (90)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~------~~rv~~~~~d~~~~   78 (90)
                      +.+.+.+++.++   ..+..+|+|+-||+|.++..|++..  .+++++|. +++++.|++      -.+++|+.+|..+.
T Consensus       198 e~l~~~v~~~~~---~~~~~~vlDLycG~G~fsl~La~~~--~~V~gvE~~~~ai~~A~~na~~n~i~n~~~~~~~~~~~  272 (358)
T d1uwva2         198 QKMVARALEWLD---VQPEDRVLDLFCGMGNFTLPLATQA--ASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEED  272 (358)
T ss_dssp             HHHHHHHHHHHT---CCTTCEEEEESCTTTTTHHHHHTTS--SEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCTTSC
T ss_pred             hHHHHHHHHhhc---cCCCceEEEecccccccchhccccc--cEEEeccCcHHHHHHHHHhHHhcccccceeeecchhhh
Confidence            344555555555   5567899999999999999998864  67999999 999998876      27899999998763


Q ss_pred             CC-------cccEEEe
Q 034578           79 IP-------NADAVFM   87 (90)
Q Consensus        79 ~p-------~~D~i~l   87 (90)
                      ++       .+|++++
T Consensus       273 ~~~~~~~~~~~d~vil  288 (358)
T d1uwva2         273 VTKQPWAKNGFDKVLL  288 (358)
T ss_dssp             CSSSGGGTTCCSEEEE
T ss_pred             hhhhhhhhccCceEEe
Confidence            21       2698886

>d1zq9a1 c.66.1.24 (A:36-313) Probable dimethyladenosine transferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: Probable dimethyladenosine transferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.49  E-value=2e-07  Score=60.63  Aligned_cols=75  Identities=16%  Similarity=0.359  Sum_probs=57.4

Q ss_pred             hhHHHHHhhcccCCCCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeeh-HHHHHhCCC-------CCCeeEEEecCCC-
Q 034578            7 ITMKAFVSHYKVDGFNNIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDL-QHVIATAPT-------HEGVSHVGGDMFD-   77 (90)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~-------~~rv~~~~~d~~~-   77 (90)
                      .+++.+++...   .....+|++||+|+|.++..|+++.+  +++++|+ +..++..++       .++++++.+|+++ 
T Consensus         8 ~i~~kIv~~~~---~~~~d~VlEIGPG~G~LT~~Ll~~~~--~v~aiE~D~~l~~~L~~~~~~~~~~~~~~~i~~D~l~~   82 (278)
T d1zq9a1           8 LIINSIIDKAA---LRPTDVVLEVGPGTGNMTVKLLEKAK--KVVACELDPRLVAELHKRVQGTPVASKLQVLVGDVLKT   82 (278)
T ss_dssp             HHHHHHHHHTC---CCTTCEEEEECCTTSTTHHHHHHHSS--EEEEEESCHHHHHHHHHHHTTSTTGGGEEEEESCTTTS
T ss_pred             HHHHHHHHHhC---CCCCCEEEEECCCchHHHHHHHhcCC--cEEEEEEccchhHHHHHHHhhhccccchhhhHHHHhhh
Confidence            45677877776   56678999999999999999999854  6778887 766655432       2689999999998 


Q ss_pred             CCCcccEEE
Q 034578           78 AIPNADAVF   86 (90)
Q Consensus        78 ~~p~~D~i~   86 (90)
                      ++|..+.++
T Consensus        83 ~~~~~~~vV   91 (278)
T d1zq9a1          83 DLPFFDTCV   91 (278)
T ss_dssp             CCCCCSEEE
T ss_pred             hhhhhhhhh
Confidence            566544443

>d2ih2a1 c.66.1.27 (A:21-243) DNA methylase TaqI, N-terminal domain {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: DNA methylase TaqI, N-terminal domain
domain: DNA methylase TaqI, N-terminal domain
species: Thermus aquaticus [TaxId: 271]

Probab=98.49  E-value=2.2e-07  Score=57.30  Aligned_cols=76  Identities=9%  Similarity=0.062  Sum_probs=55.9

Q ss_pred             hhHHHHHhhcccCCCCCCCeEEEecCCchHHHHHHHHHCCC-CeEEEeeh-HHHHHhCCCCCCeeEEEecCCCCC--Ccc
Q 034578            7 ITMKAFVSHYKVDGFNNIRSMVDVGGGTGTVLAEIVKSYPH-IKGINFDL-QHVIATAPTHEGVSHVGGDMFDAI--PNA   82 (90)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~-~~~~~~D~-p~~~~~a~~~~rv~~~~~d~~~~~--p~~   82 (90)
                      .+++.+++.+.   .....+|+|.|||+|.++..+.++.+. .++.++|+ |.+++.++   +..+..+|++...  ..+
T Consensus         6 ~i~~~m~~l~~---~~~~~~IlDp~~G~G~fl~~~~~~~~~~~~i~g~ei~~~~~~~~~---~~~~~~~~~~~~~~~~~f   79 (223)
T d2ih2a1           6 EVVDFMVSLAE---APRGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKALDLPP---WAEGILADFLLWEPGEAF   79 (223)
T ss_dssp             HHHHHHHHHCC---CCTTCEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTTCCCCT---TEEEEESCGGGCCCSSCE
T ss_pred             HHHHHHHHhcC---CCCcCEEEECCCchHHHHHHHHHhccccceEEeeecCHHHHhhcc---cceeeeeehhcccccccc
Confidence            35566677666   456789999999999999999877654 67999999 76654433   4577788887733  238


Q ss_pred             cEEEee
Q 034578           83 DAVFMK   88 (90)
Q Consensus        83 D~i~l~   88 (90)
                      |+++.+
T Consensus        80 d~ii~n   85 (223)
T d2ih2a1          80 DLILGN   85 (223)
T ss_dssp             EEEEEC
T ss_pred             ceeccc
Confidence            988764

>d1mjfa_ c.66.1.17 (A:) Putative spermidine synthetase PF0127 (SpeE) {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Putative spermidine synthetase PF0127 (SpeE)
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=98.48  E-value=1.5e-07  Score=61.09  Aligned_cols=65  Identities=22%  Similarity=0.339  Sum_probs=53.8

Q ss_pred             CCCCeEEEecCCchHHHHHHHHHCCCCeEEEeeh-HHHHHhCCC----------------CCCeeEEEecCCCC---CCc
Q 034578           22 NNIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDL-QHVIATAPT----------------HEGVSHVGGDMFDA---IPN   81 (90)
Q Consensus        22 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~----------------~~rv~~~~~d~~~~---~p~   81 (90)
                      .++++||.+|+|.|..+.++++ +|..+++.+|+ |.+++.+++                .+|++++.+|..+.   -..
T Consensus        71 ~~p~~vLiiG~G~G~~~~~~l~-~~~~~v~~VEiD~~Vi~~a~~~f~~~~~~~~~~~~~~d~rv~i~~~Da~~~l~~~~~  149 (276)
T d1mjfa_          71 PKPKRVLVIGGGDGGTVREVLQ-HDVDEVIMVEIDEDVIMVSKDLIKIDNGLLEAMLNGKHEKAKLTIGDGFEFIKNNRG  149 (276)
T ss_dssp             SCCCEEEEEECTTSHHHHHHTT-SCCSEEEEEESCHHHHHHHHHHTCTTTTHHHHHHTTCCSSEEEEESCHHHHHHHCCC
T ss_pred             CCCceEEEecCCchHHHHHHHH-hCCceEEEecCCHHHHHHHHHhhhhccchhhhhhccCCCCceEEEChHHHHHhccCC
Confidence            3578999999999999999987 56679999999 999998763                37899999998752   234


Q ss_pred             ccEEEe
Q 034578           82 ADAVFM   87 (90)
Q Consensus        82 ~D~i~l   87 (90)
                      ||+|++
T Consensus       150 yDvIi~  155 (276)
T d1mjfa_         150 FDVIIA  155 (276)
T ss_dssp             EEEEEE
T ss_pred             CCEEEE
Confidence            999986

>d1wxxa2 c.66.1.51 (A:65-382) Hypothetical protein TTHA1280, middle and C-terminal domains {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein TTHA1280, middle and C-terminal domains
species: Thermus thermophilus [TaxId: 274]

Probab=98.44  E-value=3.8e-08  Score=65.00  Aligned_cols=64  Identities=16%  Similarity=0.173  Sum_probs=52.4

Q ss_pred             CCCeEEEecCCchHHHHHHHHHCCCCeEEEeeh-HHHHHhCCCC------CCeeEEEecCCCC---C----CcccEEEee
Q 034578           23 NIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDL-QHVIATAPTH------EGVSHVGGDMFDA---I----PNADAVFMK   88 (90)
Q Consensus        23 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~------~rv~~~~~d~~~~---~----p~~D~i~l~   88 (90)
                      +..+|||++||+|.++..+++.  ..+++++|+ +.+++.++++      ++++++.+|.++.   +    ..||+|++.
T Consensus       145 ~g~rVLDl~~gtG~~s~~~a~g--~~~V~~vD~s~~al~~a~~n~~~ngl~~~~~i~~d~~~~~~~~~~~~~~fD~Vi~D  222 (318)
T d1wxxa2         145 RGERALDVFSYAGGFALHLALG--FREVVAVDSSAEALRRAEENARLNGLGNVRVLEANAFDLLRRLEKEGERFDLVVLD  222 (318)
T ss_dssp             CEEEEEEETCTTTHHHHHHHHH--EEEEEEEESCHHHHHHHHHHHHHTTCTTEEEEESCHHHHHHHHHHTTCCEEEEEEC
T ss_pred             CCCeeeccCCCCcHHHHHHHhc--CCcEEeecchHHHHHHHHHHHHHcCCCCcceeeccHHHHhhhhHhhhcCCCEEEEc
Confidence            4679999999999999998865  468999999 9999998762      6799999998762   2    239999873

>d2b78a2 c.66.1.51 (A:69-385) Hypothetical protein SMu776, middle and C-terminal domains {Streptococcus mutans [TaxId: 1309]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein SMu776, middle and C-terminal domains
species: Streptococcus mutans [TaxId: 1309]

Probab=98.42  E-value=9.2e-08  Score=63.21  Aligned_cols=76  Identities=12%  Similarity=0.106  Sum_probs=56.8

Q ss_pred             hhhHHHHHhhcccCCCCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeeh-HHHHHhCCC--------CCCeeEEEecCC
Q 034578            6 KITMKAFVSHYKVDGFNNIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDL-QHVIATAPT--------HEGVSHVGGDMF   76 (90)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~--------~~rv~~~~~d~~   76 (90)
                      +.....+++.+.     +..+|||+.||+|.+++.+++. ...+++++|+ +.+++.+++        ..+++++.+|.+
T Consensus       132 R~~r~~l~~~~~-----~g~~VLdlf~~~G~~sl~aa~~-ga~~V~~vD~s~~a~~~a~~N~~~n~l~~~~~~~i~~d~~  205 (317)
T d2b78a2         132 RQVRNELINGSA-----AGKTVLNLFSYTAAFSVAAAMG-GAMATTSVDLAKRSRALSLAHFEANHLDMANHQLVVMDVF  205 (317)
T ss_dssp             HHHHHHHHHTTT-----BTCEEEEETCTTTHHHHHHHHT-TBSEEEEEESCTTHHHHHHHHHHHTTCCCTTEEEEESCHH
T ss_pred             HHHHHHHHHHhh-----CCCceeecCCCCcHHHHHHHhC-CCceEEEecCCHHHHHHHHHHHHHhcccCcceEEEEccHH
Confidence            333445555443     4679999999999999987764 3356999999 888888765        257999999998


Q ss_pred             CCC------C-cccEEEe
Q 034578           77 DAI------P-NADAVFM   87 (90)
Q Consensus        77 ~~~------p-~~D~i~l   87 (90)
                      +.+      . .||+|++
T Consensus       206 ~~l~~~~~~~~~fD~Ii~  223 (317)
T d2b78a2         206 DYFKYARRHHLTYDIIII  223 (317)
T ss_dssp             HHHHHHHHTTCCEEEEEE
T ss_pred             HHHHHHHhhcCCCCEEEE
Confidence            632      2 2999987

>d1qyra_ c.66.1.24 (A:) High level kasugamycin resistance protein KsgA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: High level kasugamycin resistance protein KsgA
species: Escherichia coli [TaxId: 562]

Probab=98.35  E-value=1.5e-07  Score=60.48  Aligned_cols=67  Identities=15%  Similarity=0.196  Sum_probs=54.1

Q ss_pred             hhhHHHHHhhcccCCCCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeeh-HHHHHhCCC----CCCeeEEEecCCC
Q 034578            6 KITMKAFVSHYKVDGFNNIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDL-QHVIATAPT----HEGVSHVGGDMFD   77 (90)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~----~~rv~~~~~d~~~   77 (90)
                      ..+++.+++...   ..+...|++||+|+|.++..|++..  .+++++|+ +..++..++    .++++++.+|+++
T Consensus         7 ~~~~~~Iv~~~~---~~~~d~vlEIGpG~G~LT~~Ll~~~--~~v~aiEiD~~l~~~L~~~~~~~~~~~ii~~D~l~   78 (252)
T d1qyra_           7 QFVIDSIVSAIN---PQKGQAMVEIGPGLAALTEPVGERL--DQLTVIELDRDLAARLQTHPFLGPKLTIYQQDAMT   78 (252)
T ss_dssp             HHHHHHHHHHHC---CCTTCCEEEECCTTTTTHHHHHTTC--SCEEEECCCHHHHHHHHTCTTTGGGEEEECSCGGG
T ss_pred             HHHHHHHHHhcC---CCCCCEEEEECCCchHHHHHHHccC--CceEEEEeccchhHHHHHHhhhccchhHHhhhhhh
Confidence            346778888777   6677899999999999999999875  46788888 777665543    4789999999987

>d2avda1 c.66.1.1 (A:44-262) COMT domain-containing protein 1, COMTD1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: COMT domain-containing protein 1, COMTD1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.34  E-value=1.9e-07  Score=58.84  Aligned_cols=67  Identities=9%  Similarity=0.099  Sum_probs=55.2

Q ss_pred             CCCCeEEEecCCchHHHHHHHHHCC-CCeEEEeeh-HHHHHhCCC-------CCCeeEEEecCCCC--------CC-ccc
Q 034578           22 NNIRSMVDVGGGTGTVLAEIVKSYP-HIKGINFDL-QHVIATAPT-------HEGVSHVGGDMFDA--------IP-NAD   83 (90)
Q Consensus        22 ~~~~~vlDvG~G~G~~~~~l~~~~p-~~~~~~~D~-p~~~~~a~~-------~~rv~~~~~d~~~~--------~p-~~D   83 (90)
                      .++++||+||||+|.-+..+++..| +.+++.+|. |+..+.|++       .++++++.||..+.        .+ .||
T Consensus        58 ~~~k~vLEiGt~~GyStl~~a~al~~~g~i~tie~~~~~~~~A~~~~~~ag~~~~i~~~~Gda~e~l~~~~~~~~~~~fD  137 (219)
T d2avda1          58 IQAKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAEAEHKIDLRLKPALETLDELLAAGEAGTFD  137 (219)
T ss_dssp             TTCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHHTTCTTCEE
T ss_pred             cCCCeEEEEechhhHHHHHHHHhCCCCceEEEEeechhHHHHHHHHHHhcCccceEEEEEeehhhcchhhhhhcccCCcc
Confidence            4578999999999999999999976 789999998 887777764       47899999997652        12 389


Q ss_pred             EEEee
Q 034578           84 AVFMK   88 (90)
Q Consensus        84 ~i~l~   88 (90)
                      +|++-
T Consensus       138 ~ifiD  142 (219)
T d2avda1         138 VAVVD  142 (219)
T ss_dssp             EEEEC
T ss_pred             EEEEe
Confidence            99874

>d2a14a1 c.66.1.15 (A:5-261) Indolethylamine N-methyltransferase, INMT {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arylamine N-methyltransferase
domain: Indolethylamine N-methyltransferase, INMT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.34  E-value=2.8e-08  Score=62.62  Aligned_cols=42  Identities=10%  Similarity=-0.003  Sum_probs=33.7

Q ss_pred             CCCCeEEEecCCchHHHHHHHHHCCCCeEEEeeh-HHHHHhCCC
Q 034578           22 NNIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDL-QHVIATAPT   64 (90)
Q Consensus        22 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~   64 (90)
                      .+..+|||||||+|.++..+++.. ..+++++|+ |.+++.|++
T Consensus        50 ~~g~~vLDlGcG~G~~~~~~~~~~-~~~v~giD~S~~~i~~a~~   92 (257)
T d2a14a1          50 LQGDTLIDIGSGPTIYQVLAACDS-FQDITLSDFTDRNREELEK   92 (257)
T ss_dssp             CCEEEEEESSCTTCCGGGTTGGGT-EEEEEEEESCHHHHHHHHH
T ss_pred             CCCCEEEEECCCCCHhHHHHhccc-cCcEEEecCCHHHHHHHHH
Confidence            356789999999999887766653 237999999 999998764

>d1wg8a2 c.66.1.23 (A:5-108,A:207-284) TM0872, methyltransferase domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: MraW-like putative methyltransferases
domain: TM0872, methyltransferase domain
species: Thermus thermophilus [TaxId: 274]

Probab=98.18  E-value=2e-06  Score=52.67  Aligned_cols=75  Identities=16%  Similarity=0.166  Sum_probs=60.0

Q ss_pred             hHHHHHhhcccCCCCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeeh-HHHHHhCCC--CCCeeEEEecCCC-C-----
Q 034578            8 TMKAFVSHYKVDGFNNIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDL-QHVIATAPT--HEGVSHVGGDMFD-A-----   78 (90)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~--~~rv~~~~~d~~~-~-----   78 (90)
                      +.+.+++.+.   ..+...++|..+|.|..+..++++  +.+++++|. |.+++.+++  .+|+.++.++|-+ .     
T Consensus         6 ll~Evl~~l~---~~~g~~~vD~T~G~GGhs~~iL~~--~~~viaiD~D~~ai~~a~~~~~~~~~~~~~~f~~~~~~l~~   80 (182)
T d1wg8a2           6 LYQEALDLLA---VRPGGVYVDATLGGAGHARGILER--GGRVIGLDQDPEAVARAKGLHLPGLTVVQGNFRHLKRHLAA   80 (182)
T ss_dssp             THHHHHHHHT---CCTTCEEEETTCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHTCCTTEEEEESCGGGHHHHHHH
T ss_pred             HHHHHHHhcC---CCCCCEEEEeCCCCcHHHHHHhcc--cCcEEEEhhhhhHHHHHhhccccceeEeehHHHHHHHHHHH
Confidence            4566777776   567789999999999999999997  568999999 999988764  5789999998865 1     


Q ss_pred             C--CcccEEEe
Q 034578           79 I--PNADAVFM   87 (90)
Q Consensus        79 ~--p~~D~i~l   87 (90)
                      .  ..+|.|++
T Consensus        81 ~~~~~vdgIl~   91 (182)
T d1wg8a2          81 LGVERVDGILA   91 (182)
T ss_dssp             TTCSCEEEEEE
T ss_pred             cCCCccCEEEE
Confidence            1  23788875

>d1susa1 c.66.1.1 (A:21-247) Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: Caffeoyl-CoA O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=98.13  E-value=7.6e-07  Score=56.29  Aligned_cols=65  Identities=17%  Similarity=0.262  Sum_probs=54.4

Q ss_pred             CCCeEEEecCCchHHHHHHHHHCC-CCeEEEeeh-HHHHHhCCC-------CCCeeEEEecCCCCC---------C-ccc
Q 034578           23 NIRSMVDVGGGTGTVLAEIVKSYP-HIKGINFDL-QHVIATAPT-------HEGVSHVGGDMFDAI---------P-NAD   83 (90)
Q Consensus        23 ~~~~vlDvG~G~G~~~~~l~~~~p-~~~~~~~D~-p~~~~~a~~-------~~rv~~~~~d~~~~~---------p-~~D   83 (90)
                      ++++||++|+++|.-+..+++..| +.+++.+|. |+..+.|++       .++++++.||..+.+         . .||
T Consensus        59 ~~k~iLEiGT~~GyStl~la~al~~~g~v~tie~~~~~~~~A~~~~~~~g~~~~i~~~~g~a~~~L~~l~~~~~~~~~fD  138 (227)
T d1susa1          59 NAKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLPVIKKAGVDHKIDFREGPALPVLDEMIKDEKNHGSYD  138 (227)
T ss_dssp             TCCEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCCHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHCGGGTTCBS
T ss_pred             CCCcEEEecchhhhhHHHHHhhCCCCcEEEEEeccchhHHHHHHHHHHhccccceeeeehHHHHHHHHHHhccccCCcee
Confidence            578999999999999999999987 689999998 887777765       378999999987622         2 389


Q ss_pred             EEEe
Q 034578           84 AVFM   87 (90)
Q Consensus        84 ~i~l   87 (90)
                      +|++
T Consensus       139 ~iFi  142 (227)
T d1susa1         139 FIFV  142 (227)
T ss_dssp             EEEE
T ss_pred             EEEe
Confidence            9986

>d2g72a1 c.66.1.15 (A:18-280) Phenylethanolamine N-methyltransferase, PNMTase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arylamine N-methyltransferase
domain: Phenylethanolamine N-methyltransferase, PNMTase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.07  E-value=5.6e-07  Score=57.49  Aligned_cols=41  Identities=15%  Similarity=-0.008  Sum_probs=32.3

Q ss_pred             CCCCeEEEecCCchHHHHHHHHHCCCCeEEEeeh-HHHHHhCC
Q 034578           22 NNIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDL-QHVIATAP   63 (90)
Q Consensus        22 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~   63 (90)
                      .+..++||+|||+|.+....+..+. .+++++|. |.+++.++
T Consensus        53 ~~g~~vLDiGcG~g~~~~~~~~~~~-~~v~~~D~S~~~i~~~~   94 (263)
T d2g72a1          53 VSGRTLIDIGSGPTVYQLLSACSHF-EDITMTDFLEVNRQELG   94 (263)
T ss_dssp             SCCSEEEEETCTTCCGGGTTGGGGC-SEEEEECSCHHHHHHHH
T ss_pred             CCCcEEEEeccCCCHHHHHHhcccC-CeEEEEeCCHHHHHHHH
Confidence            3567999999999988765554443 37999999 99998775

>d1jsxa_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Glucose-inhibited division protein B (GidB)
domain: Glucose-inhibited division protein B (GidB)
species: Escherichia coli [TaxId: 562]

Probab=98.05  E-value=1.4e-05  Score=49.73  Aligned_cols=67  Identities=16%  Similarity=0.151  Sum_probs=50.7

Q ss_pred             CCCeEEEecCCchHHHHHHHHHCCCCeEEEeeh-HHH---HHhCC---CCCCeeEEEecCCCCCC--cccEEEeec
Q 034578           23 NIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDL-QHV---IATAP---THEGVSHVGGDMFDAIP--NADAVFMKV   89 (90)
Q Consensus        23 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~---~~~a~---~~~rv~~~~~d~~~~~p--~~D~i~l~~   89 (90)
                      +..+++|+|+|.|.=++-++-.+|+.+++.+|. ..-   ++.+.   .-.+++++..+..+..+  .||+|+.+-
T Consensus        65 ~~~~ilDiGsGaG~PGi~laI~~p~~~~~Lves~~KK~~FL~~~~~~L~L~nv~v~~~R~E~~~~~~~fD~V~sRA  140 (207)
T d1jsxa_          65 QGERFIDVGTGPGLPGIPLSIVRPEAHFTLLDSLGKRVRFLRQVQHELKLENIEPVQSRVEEFPSEPPFDGVISRA  140 (207)
T ss_dssp             CSSEEEEETCTTTTTHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTTCSSEEEEECCTTTSCCCSCEEEEECSC
T ss_pred             cCCceeeeeccCCceeeehhhhcccceEEEEecchHHHHHHHHHHHHcCCcceeeeccchhhhccccccceehhhh
Confidence            457999999999999999998999999999995 332   22211   13689999998877322  499998753

>d1af7a2 c.66.1.8 (A:92-284) Chemotaxis receptor methyltransferase CheR, C-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Chemotaxis receptor methyltransferase CheR, C-terminal domain
domain: Chemotaxis receptor methyltransferase CheR, C-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=98.04  E-value=5.8e-06  Score=50.66  Aligned_cols=68  Identities=15%  Similarity=0.187  Sum_probs=47.5

Q ss_pred             CCCeEEEecCCchH----HHHHHHHHC----CCCeEEEeeh-HHHHHhCCC-----------------------------
Q 034578           23 NIRSMVDVGGGTGT----VLAEIVKSY----PHIKGINFDL-QHVIATAPT-----------------------------   64 (90)
Q Consensus        23 ~~~~vlDvG~G~G~----~~~~l~~~~----p~~~~~~~D~-p~~~~~a~~-----------------------------   64 (90)
                      ++-+|+++|||+|.    ++..+.+..    +..++++.|+ +.+++.|++                             
T Consensus        24 ~~lrIwsaGCstGeE~YSlA~~l~e~~~~~~~~~~I~atDi~~~~l~~A~~g~y~~~~~~~~~~~~~~~yf~~~~~~~~~  103 (193)
T d1af7a2          24 GEYRVWSAAASTGEEPYSIAITLADALGMAPGRWKVFASDIDTEVLEKARSGIYRLSELKTLSPQQLQRYFMRGTGPHEG  103 (193)
T ss_dssp             SCEEEEESCCTTTHHHHHHHHHHHHHHCSCTTSEEEEEEESCHHHHHHHHHTEEEGGGGTTSCHHHHHHHEEECCTTSCS
T ss_pred             CCeEEEEeCCCCchhHHHHHHHHHHhhhhcCCceEEEeecCChHHhhHhhcCcccHHHHhhhhHHHHhhceeecCCCccc
Confidence            45689999999998    334344332    3467999999 999987753                             


Q ss_pred             --------CCCeeEEEecCCCC--C--CcccEEEeecC
Q 034578           65 --------HEGVSHVGGDMFDA--I--PNADAVFMKVA   90 (90)
Q Consensus        65 --------~~rv~~~~~d~~~~--~--p~~D~i~l~~v   90 (90)
                              ..++.+...+....  .  ..+|+|++++|
T Consensus       104 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~fDvI~CRNV  141 (193)
T d1af7a2         104 LVRVRQELANYVEFSSVNLLEKQYNVPGPFDAIFCRNV  141 (193)
T ss_dssp             EEEECHHHHTTEEEEECCTTCSSCCCCCCEEEEEECSS
T ss_pred             eeehHHHHHHHHHHhhhhccccccCCCCCccEEEeehh
Confidence                    02356677777662  2  23999999986

>d2ifta1 c.66.1.46 (A:11-193) Putative methylase HI0767 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Putative methylase HI0767
species: Haemophilus influenzae [TaxId: 727]

Probab=97.93  E-value=6.7e-06  Score=49.96  Aligned_cols=63  Identities=21%  Similarity=0.248  Sum_probs=46.8

Q ss_pred             CCeEEEecCCchHHHHHHHHHCCCCeEEEeeh-HHHHHhCCC--------CCCeeEEEecCCC----C--CCcccEEEe
Q 034578           24 IRSMVDVGGGTGTVLAEIVKSYPHIKGINFDL-QHVIATAPT--------HEGVSHVGGDMFD----A--IPNADAVFM   87 (90)
Q Consensus        24 ~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~--------~~rv~~~~~d~~~----~--~p~~D~i~l   87 (90)
                      ..++||+-||||.++.+.+.+.. .+++.+|. +.+++..++        .....+...|.++    .  .+.||+|++
T Consensus        44 ~~~vLDlFaGsG~~glEalSRGA-~~v~fVE~~~~a~~~ik~Ni~~l~~~~~~~~~~~~d~~~~l~~~~~~~~fDlIFl  121 (183)
T d2ifta1          44 QSECLDGFAGSGSLGFEALSRQA-KKVTFLELDKTVANQLKKNLQTLKCSSEQAEVINQSSLDFLKQPQNQPHFDVVFL  121 (183)
T ss_dssp             TCEEEETTCTTCHHHHHHHHTTC-SEEEEECSCHHHHHHHHHHHHHTTCCTTTEEEECSCHHHHTTSCCSSCCEEEEEE
T ss_pred             cceEeecccCccceeeeeeeecc-eeeEEeecccchhhhHhhHHhhhcccccccccccccccccccccccCCcccEEEe
Confidence            46899999999999999999864 48999998 887766554        2346666666443    1  123999987

>d1ej0a_ c.66.1.2 (A:) RNA methyltransferase FtsJ {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: RNA methyltransferase FtsJ
domain: RNA methyltransferase FtsJ
species: Escherichia coli [TaxId: 562]

Probab=97.87  E-value=4.7e-05  Score=46.18  Aligned_cols=65  Identities=23%  Similarity=0.238  Sum_probs=49.4

Q ss_pred             hhHHHHHhhcccCCCCCCCeEEEecCCchHHHHHHHHH-CCCCeEEEeehHHHHHhCCCCCCeeEEEecCCC
Q 034578            7 ITMKAFVSHYKVDGFNNIRSMVDVGGGTGTVLAEIVKS-YPHIKGINFDLQHVIATAPTHEGVSHVGGDMFD   77 (90)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~-~p~~~~~~~D~p~~~~~a~~~~rv~~~~~d~~~   77 (90)
                      .--..|-+.++  .+.+..+|||+||++|.++..+.+. .+..+++++|+..+    +.-+.+.++.+|+.+
T Consensus         8 fKL~EI~~k~~--l~k~~~~vlDLg~aPGgw~q~~~~~~~~~~~v~~vDl~~~----~~i~~~~~~~~d~~~   73 (180)
T d1ej0a_           8 FKLDEIQQSDK--LFKPGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLPM----DPIVGVDFLQGDFRD   73 (180)
T ss_dssp             HHHHHHHHHHC--CCCTTCEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSCC----CCCTTEEEEESCTTS
T ss_pred             HHHHHHHHHhC--ccCCCCeEEEEeccCCcceEEEEeeccccceEEEeecccc----cccCCceEeeccccc
Confidence            33445667777  3677789999999999999998876 45688999998322    334678889999876

>d1i4wa_ c.66.1.24 (A:) Transcription factor sc-mtTFB {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: Transcription factor sc-mtTFB
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.79  E-value=1.8e-05  Score=52.02  Aligned_cols=72  Identities=10%  Similarity=0.062  Sum_probs=50.5

Q ss_pred             hhhHHHHHhhcccC---CCCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeeh-HHHHHhCC---CCCCeeEEEecCCC
Q 034578            6 KITMKAFVSHYKVD---GFNNIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDL-QHVIATAP---THEGVSHVGGDMFD   77 (90)
Q Consensus         6 ~~~~~~~~~~~~~~---~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~---~~~rv~~~~~d~~~   77 (90)
                      ..+++.+++...-.   ......+|||||.|.|.++..|+++...-+++++|. +...+.-+   +.+|++++.+|++.
T Consensus        23 ~~i~~~Iv~~~~l~~~~~~~~~~~VlEIGPG~G~LT~~Ll~~~~~~~v~~iE~D~~~~~~L~~~~~~~~~~ii~~D~l~  101 (322)
T d1i4wa_          23 PTVYNKIFDKLDLTKTYKHPEELKVLDLYPGVGIQSAIFYNKYCPRQYSLLEKRSSLYKFLNAKFEGSPLQILKRDPYD  101 (322)
T ss_dssp             HHHHHHHHHHHCGGGTCCCTTTCEEEEESCTTCHHHHHHHHHHCCSEEEEECCCHHHHHHHHHHTTTSSCEEECSCTTC
T ss_pred             HHHHHHHHHHhcCCccccccCCCeEEEECCCCCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHhccCCCcEEEeCchhh
Confidence            34566777665400   012456899999999999999998743357888887 65544332   35789999999874

>d2okca1 c.66.1.45 (A:9-433) Type I restriction enzyme StySJI M protein {Bacteroides thetaiotaomicron [TaxId: 818]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N-6 DNA Methylase-like
domain: Type I restriction enzyme StySJI M protein
species: Bacteroides thetaiotaomicron [TaxId: 818]

Probab=97.66  E-value=2.8e-05  Score=52.51  Aligned_cols=79  Identities=18%  Similarity=0.143  Sum_probs=56.8

Q ss_pred             hhHHHHHhhcccCCCCCCCeEEEecCCchHHHHHHHHHCC-------------CCeEEEeeh-HHHHHhCCC--------
Q 034578            7 ITMKAFVSHYKVDGFNNIRSMVDVGGGTGTVLAEIVKSYP-------------HIKGINFDL-QHVIATAPT--------   64 (90)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p-------------~~~~~~~D~-p~~~~~a~~--------   64 (90)
                      .+++.+++.++   .....+|+|-.||+|.++.++.++..             .....++|+ |.+...|+.        
T Consensus       149 ~Iv~~mv~ll~---~~~~~~IlDPacGsG~fL~~a~~~~~~~~~~~~~~~~~~~~~l~g~E~~~~~~~la~~n~~l~g~~  225 (425)
T d2okca1         149 PLIQAMVDCIN---PQMGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTLASMNLYLHGIG  225 (425)
T ss_dssp             HHHHHHHHHHC---CCTTCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHHHHHHHHHHTTCC
T ss_pred             hhhHhhheecc---CcccceeeccccccCccHHHHHHHHHhhccchhhhhhhhhhhhhhhhccHHHHHHHHhhhhhcCCc
Confidence            34556666665   44568999999999999998877542             234789998 887776652        


Q ss_pred             CCCeeEEEecCCCCCC--cccEEEee
Q 034578           65 HEGVSHVGGDMFDAIP--NADAVFMK   88 (90)
Q Consensus        65 ~~rv~~~~~d~~~~~p--~~D~i~l~   88 (90)
                      ..+..+..+|+++..+  .+|+|+.+
T Consensus       226 ~~~~~i~~~d~l~~~~~~~fD~Ii~N  251 (425)
T d2okca1         226 TDRSPIVCEDSLEKEPSTLVDVILAN  251 (425)
T ss_dssp             SSCCSEEECCTTTSCCSSCEEEEEEC
T ss_pred             cccceeecCchhhhhcccccceEEec
Confidence            2456778899988433  39999864

>d2p41a1 c.66.1.25 (A:8-264) An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5 {Dengue virus 2 [TaxId: 11060]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: mRNA cap methylase
domain: An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5
species: Dengue virus 2 [TaxId: 11060]

Probab=97.46  E-value=9.4e-05  Score=47.26  Aligned_cols=75  Identities=16%  Similarity=0.029  Sum_probs=46.5

Q ss_pred             HHHHhhcccCCCCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeehH-H--HHHhCCC---CCCeeEEEecCCCCC-Cc-
Q 034578           10 KAFVSHYKVDGFNNIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDLQ-H--VIATAPT---HEGVSHVGGDMFDAI-PN-   81 (90)
Q Consensus        10 ~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~p-~--~~~~a~~---~~rv~~~~~d~~~~~-p~-   81 (90)
                      ..+.+.+-   +.+..+|+|+|||.|..+..++++.+...+.++++- .  ..+...+   .+-+++...+-...+ +. 
T Consensus        56 ~~~~~~~~---~~~~~~vvDlG~~pGgws~~~a~~~~v~~V~g~~iG~d~~e~P~~~~~~~~ni~~~~~~~dv~~l~~~~  132 (257)
T d2p41a1          56 RWFVERNL---VTPEGKVVDLGCGRGGWSYYCGGLKNVREVKGLTKGGPGHEEPIPMSTYGWNLVRLQSGVDVFFIPPER  132 (257)
T ss_dssp             HHHHHTTS---SCCCEEEEEETCTTSHHHHHHHTSTTEEEEEEECCCSTTSCCCCCCCSTTGGGEEEECSCCTTTSCCCC
T ss_pred             HHHHHhcC---ccCCCeEEEecCCCChHHHHHHhhcCCCceeEEEecCccccCCccccccccccccchhhhhHHhcCCCc
Confidence            44455554   566779999999999999999998776777777761 1  0111111   123455555433333 33 


Q ss_pred             ccEEEe
Q 034578           82 ADAVFM   87 (90)
Q Consensus        82 ~D~i~l   87 (90)
                      +|++++
T Consensus       133 ~D~vlc  138 (257)
T d2p41a1         133 CDTLLC  138 (257)
T ss_dssp             CSEEEE
T ss_pred             CCEEEe
Confidence            888875

>d1xdza_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Glucose-inhibited division protein B (GidB)
domain: Glucose-inhibited division protein B (GidB)
species: Bacillus subtilis [TaxId: 1423]

Probab=96.94  E-value=0.00036  Score=44.03  Aligned_cols=67  Identities=18%  Similarity=0.283  Sum_probs=47.4

Q ss_pred             CCCeEEEecCCchHHHHHHHHHCCCCeEEEeeh-HH---HHHhCCC---CCCeeEEEecCCC-----CC-CcccEEEeec
Q 034578           23 NIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDL-QH---VIATAPT---HEGVSHVGGDMFD-----AI-PNADAVFMKV   89 (90)
Q Consensus        23 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~---~~~~a~~---~~rv~~~~~d~~~-----~~-p~~D~i~l~~   89 (90)
                      ...+++|||+|.|.=++-++=.+|+.+++.+|. ..   .++.+..   -.++.++.+...+     .. ..||+|+.+-
T Consensus        70 ~~~~ilDiGSGaGfPGi~laI~~p~~~v~Lves~~KK~~FL~~v~~~L~L~n~~i~~~R~E~~~~~~~~~~~~D~v~sRA  149 (239)
T d1xdza_          70 QVNTICDVGAGAGFPSLPIKICFPHLHVTIVDSLNKRITFLEKLSEALQLENTTFCHDRAETFGQRKDVRESYDIVTARA  149 (239)
T ss_dssp             GCCEEEEECSSSCTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHTCSSEEEEESCHHHHTTCTTTTTCEEEEEEEC
T ss_pred             CCCeEEeecCCCchHHHHHHHhCCCccceeecchHHHHHHHHHHHHHhCCCCcEEEeehhhhccccccccccceEEEEhh
Confidence            457999999999999999998899999999995 33   2222211   2567777765532     22 2389998763

>d2bm8a1 c.66.1.50 (A:2-233) Cephalosporin hydroxylase CmcI {Streptomyces clavuligerus [TaxId: 1901]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CmcI-like
domain: Cephalosporin hydroxylase CmcI
species: Streptomyces clavuligerus [TaxId: 1901]

Probab=96.78  E-value=0.0012  Score=41.26  Aligned_cols=55  Identities=24%  Similarity=0.183  Sum_probs=39.6

Q ss_pred             CCCeEEEecCCchHHHHHHH---H-HCCCCeEEEeeh-HHHHHhCC-CCCCeeEEEecCCC
Q 034578           23 NIRSMVDVGGGTGTVLAEIV---K-SYPHIKGINFDL-QHVIATAP-THEGVSHVGGDMFD   77 (90)
Q Consensus        23 ~~~~vlDvG~G~G~~~~~l~---~-~~p~~~~~~~D~-p~~~~~a~-~~~rv~~~~~d~~~   77 (90)
                      ++.+||++|++.|.-+..++   + ..++.+++++|+ +....... ...|++++.+|..+
T Consensus        80 KPk~ILEIGv~~GgS~~~~a~~l~~~~~~~kI~giDId~~~~~~~~~~~~~I~~i~gDs~~  140 (232)
T d2bm8a1          80 RPRTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQIPASDMENITLHQGDCSD  140 (232)
T ss_dssp             CCSEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCTTCCCCGGGCTTEEEEECCSSC
T ss_pred             CCCEEEEECCCCchHHHHHHHHHHhcCCCceEEecCcChhhhhhhhccccceeeeeccccc
Confidence            36899999999997544333   2 347899999998 65433332 25899999999765

>d2oyra1 c.66.1.55 (A:1-250) Hypothetical protein YhiQ {Shigella flexneri [TaxId: 623]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhiQ-like
domain: Hypothetical protein YhiQ
species: Shigella flexneri [TaxId: 623]

Probab=96.48  E-value=0.00075  Score=42.84  Aligned_cols=62  Identities=15%  Similarity=0.177  Sum_probs=46.5

Q ss_pred             CCeEEEecCCchHHHHHHHHHCCCCeEEEeeh-HHHHHh-------CCC--------CCCeeEEEecCCC---CCC-ccc
Q 034578           24 IRSMVDVGGGTGTVLAEIVKSYPHIKGINFDL-QHVIAT-------APT--------HEGVSHVGGDMFD---AIP-NAD   83 (90)
Q Consensus        24 ~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~-------a~~--------~~rv~~~~~d~~~---~~p-~~D   83 (90)
                      ..+|||.=+|.|..+..++...  .+++.+|. |.+...       +..        ..|++++.+|..+   ... .+|
T Consensus        89 ~~~VlD~TaGlG~Da~vlA~~G--~~V~~iEr~p~l~~ll~d~l~r~~~~~~~~~~~~~ri~li~~Ds~~~L~~~~~~~D  166 (250)
T d2oyra1          89 LPDVVDATAGLGRDAFVLASVG--CRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLTALTDITPRPQ  166 (250)
T ss_dssp             CCCEEETTCTTCHHHHHHHHHT--CCEEEEECCHHHHHHHHHHHHHHHHCTTTHHHHHHHEEEEESCHHHHSTTCSSCCS
T ss_pred             CCEEEECCCcccHHHHHHHhCC--CEEEEEccCHHHHHHHHHHHHHHHhCchhHHHHhhhheeecCcHHHHHhccCCCCC
Confidence            3489999999999999999984  78999997 654332       221        1489999999655   233 389


Q ss_pred             EEEe
Q 034578           84 AVFM   87 (90)
Q Consensus        84 ~i~l   87 (90)
                      +|++
T Consensus       167 vIYl  170 (250)
T d2oyra1         167 VVYL  170 (250)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            9987

>d2b9ea1 c.66.1.38 (A:133-425) NOL1R {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: NOL1/NOP2/sun
domain: NOL1R
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.41  E-value=0.0053  Score=39.31  Aligned_cols=67  Identities=13%  Similarity=0.120  Sum_probs=49.6

Q ss_pred             CCCCCeEEEecCCchHHHHHHHHH-CCCCeEEEeeh-HHHHHhCCC------CCCeeEEEecCCC--C-C---CcccEEE
Q 034578           21 FNNIRSMVDVGGGTGTVLAEIVKS-YPHIKGINFDL-QHVIATAPT------HEGVSHVGGDMFD--A-I---PNADAVF   86 (90)
Q Consensus        21 ~~~~~~vlDvG~G~G~~~~~l~~~-~p~~~~~~~D~-p~~~~~a~~------~~rv~~~~~d~~~--~-~---p~~D~i~   86 (90)
                      .....+|||+++|+|.=+..++.. .+..+++++|. +.-++..++      ..++.+...|+..  + .   ..+|.|+
T Consensus        92 ~~~g~~vLD~cAapGgKt~~la~l~~~~~~i~a~d~~~~R~~~l~~~l~r~g~~~~~~~~~d~~~~~~~~~~~~~fD~VL  171 (293)
T d2b9ea1          92 PPPGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMATLLARAGVSCCELAEEDFLAVSPSDPRYHEVHYIL  171 (293)
T ss_dssp             CCTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCGGGSCTTCGGGTTEEEEE
T ss_pred             CCccceEEecccchhhHHHHHHHHhcCCceEeeecCCHHHHHHHHHHHHhcCccceeeeehhhhhhcccccccceeeEEe
Confidence            445678999999999988888766 46788999998 665555443      2678888888765  1 1   2378887


Q ss_pred             e
Q 034578           87 M   87 (90)
Q Consensus        87 l   87 (90)
                      +
T Consensus       172 ~  172 (293)
T d2b9ea1         172 L  172 (293)
T ss_dssp             E
T ss_pred             e
Confidence            5

>d2ar0a1 c.66.1.45 (A:6-529) M.EcoKI {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N-6 DNA Methylase-like
domain: M.EcoKI
species: Escherichia coli [TaxId: 562]

Probab=96.25  E-value=0.0034  Score=43.12  Aligned_cols=79  Identities=20%  Similarity=0.176  Sum_probs=51.6

Q ss_pred             hhHHHHHhhcccCCCCCCCeEEEecCCchHHHHHHHHHCC------------------CCeEEEeeh-HHHHHhCCC---
Q 034578            7 ITMKAFVSHYKVDGFNNIRSMVDVGGGTGTVLAEIVKSYP------------------HIKGINFDL-QHVIATAPT---   64 (90)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p------------------~~~~~~~D~-p~~~~~a~~---   64 (90)
                      .+++.+++.+.   .....+|+|-.||+|.++....+...                  .....++|+ |.+...|+-   
T Consensus       151 ~Iv~~mv~ll~---~~~~~~i~DPacGsG~fL~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~G~E~~~~~~~la~~nl~  227 (524)
T d2ar0a1         151 PLIKTIIHLLK---PQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCL  227 (524)
T ss_dssp             HHHHHHHHHHC---CCTTCCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESCHHHHHHHHHHHH
T ss_pred             chhHhhhhccc---CccchhhcchhhhcchhhHHHHHHHHHhcCcccccchhHHHHHHHhhhhhhccCHHHHHHHHHHHH
Confidence            34555566555   34567899999999999988765421                  125789998 887776642   


Q ss_pred             ----C----CCeeEEEecCCC----CCCcccEEEee
Q 034578           65 ----H----EGVSHVGGDMFD----AIPNADAVFMK   88 (90)
Q Consensus        65 ----~----~rv~~~~~d~~~----~~p~~D~i~l~   88 (90)
                          .    ..-.+..++.+.    ..+.||+|+.+
T Consensus       228 l~~~~~~i~~~~~~~~~~~l~~d~~~~~kfD~Ii~N  263 (524)
T d2ar0a1         228 LHDIEGNLDHGGAIRLGNTLGSDGENLPKAHIVATN  263 (524)
T ss_dssp             TTTCCCBGGGTBSEEESCTTSHHHHTSCCEEEEEEC
T ss_pred             hhcccccccccchhhhhhhhhhcccccccceeEEec
Confidence                1    123455667665    13459998864

>d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Aquifex aeolicus [TaxId: 63363]

Probab=96.19  E-value=0.0048  Score=35.86  Aligned_cols=63  Identities=17%  Similarity=0.133  Sum_probs=43.5

Q ss_pred             eEEEecCCc--hHHHHHHHHHCCCCeEEEeeh-HHHHHhCCCCCCeeEEEecCCC-CCCcccEEEee
Q 034578           26 SMVDVGGGT--GTVLAEIVKSYPHIKGINFDL-QHVIATAPTHEGVSHVGGDMFD-AIPNADAVFMK   88 (90)
Q Consensus        26 ~vlDvG~G~--G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~~rv~~~~~d~~~-~~p~~D~i~l~   88 (90)
                      +|+=||+|.  +.++..|.+..+..+++++|. ++.++.+++...+.....+... ....+|+|++.
T Consensus         3 ~I~IIG~G~mG~sla~~L~~~g~~~~I~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~dlIila   69 (171)
T d2g5ca2           3 NVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVDLGIIDEGTTSIAKVEDFSPDFVMLS   69 (171)
T ss_dssp             EEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHTTSCSEEESCGGGGGGTCCSEEEEC
T ss_pred             EEEEEccCHHHHHHHHHHHhcCCCeEEEEEECChHHHHHHHHhhcchhhhhhhhhhhcccccccccc
Confidence            577799983  457778888888889999999 8888888765444333333332 22347888764

>d1sqga2 c.66.1.38 (A:145-428) Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: NOL1/NOP2/sun
domain: Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=96.19  E-value=0.0072  Score=38.50  Aligned_cols=67  Identities=12%  Similarity=0.205  Sum_probs=46.0

Q ss_pred             CCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeeh-HHHHHhCCC------CCCeeEEEecCCC--C-CCc-ccEEEe
Q 034578           21 FNNIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDL-QHVIATAPT------HEGVSHVGGDMFD--A-IPN-ADAVFM   87 (90)
Q Consensus        21 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~------~~rv~~~~~d~~~--~-~p~-~D~i~l   87 (90)
                      ..+..+|||+++|+|.=+..++...++.++++.|. +.-++..++      ...+.....|...  . .+. ||.|++
T Consensus       100 ~~~g~~vLD~CAaPGgKt~~la~l~~~~~i~a~d~~~~R~~~l~~~~~r~g~~~~~~~~~~~~~~~~~~~~~fd~IL~  177 (284)
T d1sqga2         100 PQNGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVYDNLKRLGMKATVKQGDGRYPSQWCGEQQFDRILL  177 (284)
T ss_dssp             CCTTCEEEEESCTTCHHHHHHHHHCTTCEEEEEESSTTTHHHHHHHHHHTTCCCEEEECCTTCTHHHHTTCCEEEEEE
T ss_pred             ccccceeEeccCccccchhhhhhhhhhhhhhhhhcchhhhhhHhhhhhcccccceeeeccccccchhcccccccEEEE
Confidence            45678999999999999999998888889999997 543333322      1334444444443  1 233 898875

>d2dula1 c.66.1.58 (A:3-377) N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TRM1-like
domain: N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=96.11  E-value=0.0027  Score=42.25  Aligned_cols=42  Identities=14%  Similarity=0.051  Sum_probs=37.5

Q ss_pred             CCCeEEEecCCchHHHHHHHHHCCCCeEEEeeh-HHHHHhCCC
Q 034578           23 NIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDL-QHVIATAPT   64 (90)
Q Consensus        23 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~   64 (90)
                      +..+|||..||||..++..+++.+..+++..|+ |.+++.+++
T Consensus        45 ~~~~vLD~~sasG~rsiRya~E~~~~~V~~nDis~~A~~~i~~   87 (375)
T d2dula1          45 NPKIVLDALSATGIRGIRFALETPAEEVWLNDISEDAYELMKR   87 (375)
T ss_dssp             CCSEEEESSCTTSHHHHHHHHHSSCSEEEEEESCHHHHHHHHH
T ss_pred             CCCEEEEcCCCccHHHHHHHHhCCCCEEEEecCCHHHHHHHHH
Confidence            357899999999999999999888778999999 999988865

>d1zkda1 c.66.1.52 (A:2-366) Hypothetical protein RPA4359 {Rhodopseudomonas palustris [TaxId: 1076]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: RPA4359-like
domain: Hypothetical protein RPA4359
species: Rhodopseudomonas palustris [TaxId: 1076]

Probab=95.93  E-value=0.0079  Score=39.50  Aligned_cols=38  Identities=13%  Similarity=0.359  Sum_probs=28.3

Q ss_pred             CCCeEEEecCCchHHHHHHHHHC-------CCCeEEEeeh-HHHHH
Q 034578           23 NIRSMVDVGGGTGTVLAEIVKSY-------PHIKGINFDL-QHVIA   60 (90)
Q Consensus        23 ~~~~vlDvG~G~G~~~~~l~~~~-------p~~~~~~~D~-p~~~~   60 (90)
                      +..+||++|+|+|.++..+++..       ..++...+|. |...+
T Consensus        79 ~~~~ivE~GaG~G~La~dil~~l~~~~~~~~~~~~~~vE~s~~L~~  124 (365)
T d1zkda1          79 QTLRLIEIGPGRGTMMADALRALRVLPILYQSLSVHLVEINPVLRQ  124 (365)
T ss_dssp             SSEEEEEECCTTSHHHHHHHHHHTTSHHHHTTEEEEEECCCHHHHH
T ss_pred             ccceEEecCCcccHHHHhhhhhhcccccccccceEEEeccchhHHH
Confidence            45689999999999998887653       3456788887 55433

>d1ixka_ c.66.1.38 (A:) Hypothetical methyltransferase PH1374 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: NOL1/NOP2/sun
domain: Hypothetical methyltransferase PH1374
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=95.66  E-value=0.018  Score=37.10  Aligned_cols=67  Identities=9%  Similarity=0.075  Sum_probs=47.8

Q ss_pred             CCCCCeEEEecCCchHHHHHHHHHC-CCCeEEEeeh-HHHHHhCCC------CCCeeEEEecCCC-C-CC-cccEEEe
Q 034578           21 FNNIRSMVDVGGGTGTVLAEIVKSY-PHIKGINFDL-QHVIATAPT------HEGVSHVGGDMFD-A-IP-NADAVFM   87 (90)
Q Consensus        21 ~~~~~~vlDvG~G~G~~~~~l~~~~-p~~~~~~~D~-p~~~~~a~~------~~rv~~~~~d~~~-~-~p-~~D~i~l   87 (90)
                      ..+..+|||+++|+|.=+..++... ....+++.|. +.-++..++      ..++.+...|... + .. .||.|++
T Consensus       114 ~~~g~~vlD~CAapGgKt~~l~~~~~~~~~i~a~d~~~~r~~~l~~~~~r~~~~~i~~~~~d~~~~~~~~~~fD~ILv  191 (313)
T d1ixka_         114 PKPGEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRETRLNLSRLGVLNVILFHSSSLHIGELNVEFDKILL  191 (313)
T ss_dssp             CCTTCEEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHTCCSEEEESSCGGGGGGGCCCEEEEEE
T ss_pred             CCccceeeecccchhhhhHhhhhhcccccceeeeccCHHHHHHHHHHHHHHHhhccccccccccccccccccccEEEE
Confidence            4456899999999999888888765 4678999998 665554432      2567777777665 2 23 3898876

>d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Formaldehyde dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=95.39  E-value=0.014  Score=34.99  Aligned_cols=45  Identities=20%  Similarity=0.121  Sum_probs=38.1

Q ss_pred             CCCCCeEEEecCCc-hHHHHHHHHHCCCCeEEEeeh-HHHHHhCCCC
Q 034578           21 FNNIRSMVDVGGGT-GTVLAEIVKSYPHIKGINFDL-QHVIATAPTH   65 (90)
Q Consensus        21 ~~~~~~vlDvG~G~-G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~   65 (90)
                      .++..+|+.+|||. |.++..+++.....++++.|. ++-++.+++.
T Consensus        23 v~~G~tVlV~GaG~vGl~a~~~ak~~ga~~Vi~~d~~~~rl~~a~~~   69 (195)
T d1kola2          23 VGPGSTVYVAGAGPVGLAAAASARLLGAAVVIVGDLNPARLAHAKAQ   69 (195)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHT
T ss_pred             CCCCCEEEEECcCHHHHHHHHHHHhhcccceeeecccchhhHhhhhc
Confidence            66788999999998 778888898888889999998 8877777664

>d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn Mja218
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=94.48  E-value=0.027  Score=31.40  Aligned_cols=59  Identities=20%  Similarity=0.224  Sum_probs=39.9

Q ss_pred             EEEecCCchHHHHHHHHHC--CCCeEEEeeh-HHHHHhCCCCCCeeEEEecCCCC-------CCcccEEEe
Q 034578           27 MVDVGGGTGTVLAEIVKSY--PHIKGINFDL-QHVIATAPTHEGVSHVGGDMFDA-------IPNADAVFM   87 (90)
Q Consensus        27 vlDvG~G~G~~~~~l~~~~--p~~~~~~~D~-p~~~~~a~~~~rv~~~~~d~~~~-------~p~~D~i~l   87 (90)
                      |+=+|+  |.++..+++..  .+..++++|. |+.++..++.-...++.||..++       +..+|.++.
T Consensus         3 IvI~G~--G~~G~~la~~L~~~g~~v~vid~d~~~~~~~~~~~~~~vi~Gd~~~~~~l~~~~i~~a~~vv~   71 (132)
T d1lssa_           3 IIIAGI--GRVGYTLAKSLSEKGHDIVLIDIDKDICKKASAEIDALVINGDCTKIKTLEDAGIEDADMYIA   71 (132)
T ss_dssp             EEEECC--SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHCSSEEEESCTTSHHHHHHTTTTTCSEEEE
T ss_pred             EEEECC--CHHHHHHHHHHHHCCCCcceecCChhhhhhhhhhhhhhhccCcccchhhhhhcChhhhhhhcc
Confidence            455554  67766666653  3578999998 88877665444578889998862       234777664

>d1booa_ c.66.1.11 (A:) m.PvuII N4 cytosine-specific DNA methyltransferase {Proteus vulgaris [TaxId: 585]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Type II DNA methylase
domain: m.PvuII N4 cytosine-specific DNA methyltransferase
species: Proteus vulgaris [TaxId: 585]

Probab=93.63  E-value=0.056  Score=33.58  Aligned_cols=52  Identities=19%  Similarity=0.206  Sum_probs=42.4

Q ss_pred             hhHHHHHhhcccCCCCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeeh-HHHHHhCCC
Q 034578            7 ITMKAFVSHYKVDGFNNIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDL-QHVIATAPT   64 (90)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~   64 (90)
                      .+.+.+++...    .....|||-=||+|..+.+..+.  +-+++++|+ |+.++.|++
T Consensus       238 ~L~~rlI~~~s----~~gdiVlDpF~GSGTT~~AA~~l--gR~~Ig~El~~~y~~~a~~  290 (320)
T d1booa_         238 KLPEFFIRMLT----EPDDLVVDIFGGSNTTGLVAERE--SRKWISFEMKPEYVAASAF  290 (320)
T ss_dssp             HHHHHHHHHHC----CTTCEEEETTCTTCHHHHHHHHT--TCEEEEEESCHHHHHHHHG
T ss_pred             HHHHHhhhhcc----cCCCEEEecCCCCcHHHHHHHHc--CCcEEEEeCCHHHHHHHHH
Confidence            56677777665    35689999999999999998887  578999999 898887754

>d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn bsu222
species: Bacillus subtilis [TaxId: 1423]

Probab=92.99  E-value=0.15  Score=28.02  Aligned_cols=58  Identities=17%  Similarity=0.182  Sum_probs=37.4

Q ss_pred             EEEecCCchHHHHHHHHHC--CCCeEEEeeh-HHHHHhCCCCCCeeEEEecCCCC-------CCcccEEEe
Q 034578           27 MVDVGGGTGTVLAEIVKSY--PHIKGINFDL-QHVIATAPTHEGVSHVGGDMFDA-------IPNADAVFM   87 (90)
Q Consensus        27 vlDvG~G~G~~~~~l~~~~--p~~~~~~~D~-p~~~~~a~~~~rv~~~~~d~~~~-------~p~~D~i~l   87 (90)
                      ++=+|+  |.++..+++..  -+..++++|. |+.++.++.... ..+.+|..++       +..+|.+++
T Consensus         3 ~iIiG~--G~~G~~la~~L~~~g~~vvvid~d~~~~~~~~~~~~-~~~~gd~~~~~~l~~a~i~~a~~vi~   70 (134)
T d2hmva1           3 FAVIGL--GRFGGSIVKELHRMGHEVLAVDINEEKVNAYASYAT-HAVIANATEENELLSLGIRNFEYVIV   70 (134)
T ss_dssp             EEEECC--SHHHHHHHHHHHHTTCCCEEEESCHHHHHHTTTTCS-EEEECCTTCTTHHHHHTGGGCSEEEE
T ss_pred             EEEECC--CHHHHHHHHHHHHCCCeEEEecCcHHHHHHHHHhCC-cceeeecccchhhhccCCccccEEEE
Confidence            444555  56555555543  3567899998 999998876543 4566887763       234776654

>d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Synechocystis sp. pcc 6803 [TaxId: 1148]

Probab=92.77  E-value=0.11  Score=29.71  Aligned_cols=59  Identities=17%  Similarity=0.197  Sum_probs=35.7

Q ss_pred             EEEecCC--chHHHHHHHHHCCCCeEEEeeh-HHHHHhCCCCCCeeEEEecCCCCCCcccEEEee
Q 034578           27 MVDVGGG--TGTVLAEIVKSYPHIKGINFDL-QHVIATAPTHEGVSHVGGDMFDAIPNADAVFMK   88 (90)
Q Consensus        27 vlDvG~G--~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~~rv~~~~~d~~~~~p~~D~i~l~   88 (90)
                      |.=||+|  -+.++..+.++  +.+++++|. ++.++.+++...+... .+..+.+..+|+|++.
T Consensus         3 I~iIG~G~mG~~lA~~l~~~--g~~V~~~d~~~~~~~~a~~~~~~~~~-~~~~~~~~~~DiIila   64 (165)
T d2f1ka2           3 IGVVGLGLIGASLAGDLRRR--GHYLIGVSRQQSTCEKAVERQLVDEA-GQDLSLLQTAKIIFLC   64 (165)
T ss_dssp             EEEECCSHHHHHHHHHHHHT--TCEEEEECSCHHHHHHHHHTTSCSEE-ESCGGGGTTCSEEEEC
T ss_pred             EEEEeecHHHHHHHHHHHHC--CCEEEEEECCchHHHHHHHhhcccee-eeeccccccccccccc
Confidence            5556765  23355555443  568999998 8888777664433222 2223445568999874

>d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein TM0436
species: Thermotoga maritima [TaxId: 2336]

Probab=92.75  E-value=0.11  Score=30.22  Aligned_cols=45  Identities=18%  Similarity=0.032  Sum_probs=35.5

Q ss_pred             CCCCCeEEEecCC-chHHHHHHHHHCCCCeEEEeeh-HHHHHhCCCC
Q 034578           21 FNNIRSMVDVGGG-TGTVLAEIVKSYPHIKGINFDL-QHVIATAPTH   65 (90)
Q Consensus        21 ~~~~~~vlDvG~G-~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~   65 (90)
                      .++..+||-+|+| .|.++..+++..-..+++++|. ++-.+.+++.
T Consensus        26 ~~~G~~VlV~GaG~iG~~~~~~ak~~Ga~~Vi~~~~~~~~~~~a~~l   72 (182)
T d1vj0a2          26 SFAGKTVVIQGAGPLGLFGVVIARSLGAENVIVIAGSPNRLKLAEEI   72 (182)
T ss_dssp             CCBTCEEEEECCSHHHHHHHHHHHHTTBSEEEEEESCHHHHHHHHHT
T ss_pred             CCCCCEEEEECCCccchhheecccccccccccccccccccccccccc
Confidence            4566899999998 4889999999875448999998 8777777653

>d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Mouse (Mus musculus), class II [TaxId: 10090]

Probab=92.55  E-value=0.11  Score=30.41  Aligned_cols=45  Identities=16%  Similarity=0.012  Sum_probs=37.0

Q ss_pred             CCCCCeEEEecCCc-hHHHHHHHHHCCCCeEEEeeh-HHHHHhCCCC
Q 034578           21 FNNIRSMVDVGGGT-GTVLAEIVKSYPHIKGINFDL-QHVIATAPTH   65 (90)
Q Consensus        21 ~~~~~~vlDvG~G~-G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~   65 (90)
                      .++..+|+=+|||. |.++..+++..-..++++.|. ++-.+.+++.
T Consensus        26 v~~G~~VlV~G~G~iGl~a~~~ak~~Ga~~Vi~~d~~~~r~~~a~~~   72 (174)
T d1e3ia2          26 VTPGSTCAVFGLGCVGLSAIIGCKIAGASRIIAIDINGEKFPKAKAL   72 (174)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHT
T ss_pred             CCCCCEEEEECCChHHHHHHHHHHHhCCceeeeeccchHHHHHHHHh
Confidence            56678999999997 999999999987678999998 7666666663

>d1dcta_ c.66.1.26 (A:) DNA methylase HaeIII {Haemophilus aegyptius [TaxId: 197575]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: C5 cytosine-specific DNA methylase, DCM
domain: DNA methylase HaeIII
species: Haemophilus aegyptius [TaxId: 197575]

Probab=92.52  E-value=0.18  Score=31.29  Aligned_cols=61  Identities=13%  Similarity=0.231  Sum_probs=44.1

Q ss_pred             eEEEecCCchHHHHHHHHHCCCCeE-EEeeh-HHHHHhCCCCCCeeEEEecCCC----CCCcccEEEee
Q 034578           26 SMVDVGGGTGTVLAEIVKSYPHIKG-INFDL-QHVIATAPTHEGVSHVGGDMFD----AIPNADAVFMK   88 (90)
Q Consensus        26 ~vlDvG~G~G~~~~~l~~~~p~~~~-~~~D~-p~~~~~a~~~~rv~~~~~d~~~----~~p~~D~i~l~   88 (90)
                      +++|+=||.|.+...+.++.  .++ .++|+ +.+.+.-+.+-.-..+.+|+.+    .+|..|+++.+
T Consensus         2 k~~~lF~G~Gg~~~gl~~aG--~~~~~a~e~d~~a~~~~~~N~~~~~~~~Di~~~~~~~~~~~dll~~g   68 (324)
T d1dcta_           2 NLISLFSGAGGLDLGFQKAG--FRIICANEYDKSIWKTYESNHSAKLIKGDISKISSDEFPKCDGIIGG   68 (324)
T ss_dssp             EEEEESCSSCHHHHHHHHHT--CEEEEEEECCHHHHHHHHHHCCSEEEESCTTTSCGGGSCCCSEEEEC
T ss_pred             eEEEeCcCcCHHHHHHHHCC--CEEEEEEeCCHHHHHHHHHHCCCCCccCChhhCCHhHcccccEEeec
Confidence            58999999999999998873  454 47888 7777654443234566788876    25668888754

>d2fy8a1 c.2.1.9 (A:116-244) Potassium channel-related protein MthK {Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Potassium channel-related protein MthK
species: Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]

Probab=92.04  E-value=0.073  Score=29.35  Aligned_cols=55  Identities=18%  Similarity=0.166  Sum_probs=39.6

Q ss_pred             CCchHHHHHHHHHCCCCeEEEeeh-HHHHHhCCCCCCeeEEEecCCCC-------CCcccEEEe
Q 034578           32 GGTGTVLAEIVKSYPHIKGINFDL-QHVIATAPTHEGVSHVGGDMFDA-------IPNADAVFM   87 (90)
Q Consensus        32 ~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~~rv~~~~~d~~~~-------~p~~D~i~l   87 (90)
                      ||.|.++..+++...+-.++++|. |...+..+. ..+.++.||..++       +..++.++.
T Consensus         6 ~G~g~~g~~l~~~L~~~~i~vi~~d~~~~~~~~~-~~~~~i~Gd~~~~~~L~~a~i~~A~~vi~   68 (129)
T d2fy8a1           6 CGWSESTLECLRELRGSEVFVLAEDENVRKKVLR-SGANFVHGDPTRVSDLEKANVRGARAVIV   68 (129)
T ss_dssp             ESCCHHHHHHHHTSCGGGEEEEESCTTHHHHHHH-TTCEEEESCTTSHHHHHHTTCTTCSEEEE
T ss_pred             ECCCHHHHHHHHHHcCCCCEEEEcchHHHHHHHh-cCccccccccCCHHHHHHhhhhcCcEEEE
Confidence            467889999999887777888887 766655443 3578889998762       334666654

>d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]

Probab=91.92  E-value=0.16  Score=28.98  Aligned_cols=43  Identities=16%  Similarity=0.141  Sum_probs=34.6

Q ss_pred             CCCCCeEEEecCC-chHHHHHHHHHCCCCeEEEeeh-HHHHHhCCC
Q 034578           21 FNNIRSMVDVGGG-TGTVLAEIVKSYPHIKGINFDL-QHVIATAPT   64 (90)
Q Consensus        21 ~~~~~~vlDvG~G-~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~   64 (90)
                      ..+..+|+-+|+| -|.++..+++.. +++++++|. ++-++.+++
T Consensus        24 ~~~g~~vlV~G~G~vG~~~~~~ak~~-Ga~vi~v~~~~~r~~~a~~   68 (170)
T d1e3ja2          24 VQLGTTVLVIGAGPIGLVSVLAAKAY-GAFVVCTARSPRRLEVAKN   68 (170)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHH
T ss_pred             CCCCCEEEEEcccccchhhHhhHhhh-cccccccchHHHHHHHHHH
Confidence            5567889999988 677888888876 579999998 777777765

>d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Cinnamyl alcohol dehydrogenase, ADH6
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=91.91  E-value=0.095  Score=30.15  Aligned_cols=43  Identities=16%  Similarity=0.037  Sum_probs=34.2

Q ss_pred             CCCCCeEEEecCC-chHHHHHHHHHCCCCeEEEeeh-HHHHHhCCC
Q 034578           21 FNNIRSMVDVGGG-TGTVLAEIVKSYPHIKGINFDL-QHVIATAPT   64 (90)
Q Consensus        21 ~~~~~~vlDvG~G-~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~   64 (90)
                      ..+..+|+-+|+| .|.++..+++.. +++++++|. ++-++.+++
T Consensus        25 ~~~g~~vlI~GaG~vG~~a~q~ak~~-G~~vi~~~~~~~k~~~a~~   69 (168)
T d1piwa2          25 CGPGKKVGIVGLGGIGSMGTLISKAM-GAETYVISRSSRKREDAMK   69 (168)
T ss_dssp             CSTTCEEEEECCSHHHHHHHHHHHHH-TCEEEEEESSSTTHHHHHH
T ss_pred             cCCCCEEEEECCCCcchhHHHHhhhc-cccccccccchhHHHHhhc
Confidence            5667899999998 778888888865 689999997 776666655

>d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=91.88  E-value=0.14  Score=29.81  Aligned_cols=44  Identities=23%  Similarity=0.133  Sum_probs=36.5

Q ss_pred             CCCCCeEEEecCC-chHHHHHHHHHCCCCeEEEeeh-HHHHHhCCC
Q 034578           21 FNNIRSMVDVGGG-TGTVLAEIVKSYPHIKGINFDL-QHVIATAPT   64 (90)
Q Consensus        21 ~~~~~~vlDvG~G-~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~   64 (90)
                      .++..+|+=+|+| -|.++..+++..-..+++++|. ++-++.|++
T Consensus        27 ~~~g~tVlI~G~GgvGl~ai~~ak~~G~~~Vi~vd~~~~kl~~Ak~   72 (176)
T d1d1ta2          27 VKPGSTCVVFGLGGVGLSVIMGCKSAGASRIIGIDLNKDKFEKAMA   72 (176)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHH
T ss_pred             CCCCCEEEEECCCchhHHHHHHHHHcCCceEEEecCcHHHHHHHHh
Confidence            5667899999987 5668888888877789999998 888888876

>d1g60a_ c.66.1.11 (A:) Methyltransferase mboII {Moraxella bovis [TaxId: 476]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Type II DNA methylase
domain: Methyltransferase mboII
species: Moraxella bovis [TaxId: 476]

Probab=91.63  E-value=0.14  Score=30.78  Aligned_cols=51  Identities=18%  Similarity=0.098  Sum_probs=40.8

Q ss_pred             hhHHHHHhhcccCCCCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeeh-HHHHHhCC
Q 034578            7 ITMKAFVSHYKVDGFNNIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDL-QHVIATAP   63 (90)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~   63 (90)
                      .+.+.+++.+.    .+...|||-=+|+|..+.+..+.  +=+.+++|+ |+-++.|+
T Consensus       200 ~L~~~lI~~~s----~~gd~VlDpF~GSGTT~~aa~~~--~R~~ig~El~~~y~~~a~  251 (256)
T d1g60a_         200 DLIERIIRASS----NPNDLVLDCFMGSGTTAIVAKKL--GRNFIGCDMNAEYVNQAN  251 (256)
T ss_dssp             HHHHHHHHHHC----CTTCEEEESSCTTCHHHHHHHHT--TCEEEEEESCHHHHHHHH
T ss_pred             hHHHHHHHHhC----CCCCEEEECCCCchHHHHHHHHc--CCeEEEEeCCHHHHHHHH
Confidence            45677777775    24579999999999999988887  467999999 88877764

>d2blla1 c.2.1.2 (A:316-657) Polymyxin resistance protein ArnA (PrmI) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Polymyxin resistance protein ArnA (PrmI)
species: Escherichia coli [TaxId: 562]

Probab=91.28  E-value=0.24  Score=30.97  Aligned_cols=51  Identities=18%  Similarity=0.256  Sum_probs=36.1

Q ss_pred             eEEEecCCchHHHHHHHHHC---CCCeEEEeeh-HHHHHhCCCCCCeeEEEecCCC
Q 034578           26 SMVDVGGGTGTVLAEIVKSY---PHIKGINFDL-QHVIATAPTHEGVSHVGGDMFD   77 (90)
Q Consensus        26 ~vlDvG~G~G~~~~~l~~~~---p~~~~~~~D~-p~~~~~a~~~~rv~~~~~d~~~   77 (90)
                      +||=.|+ +|.++..++++.   .+.+++++|. ........+.++++++.+|+..
T Consensus         2 KILITG~-tGfiG~~l~~~Ll~~g~~~V~~ld~~~~~~~~~~~~~~~~~i~~Di~~   56 (342)
T d2blla1           2 RVLILGV-NGFIGNHLTERLLREDHYEVYGLDIGSDAISRFLNHPHFHFVEGDISI   56 (342)
T ss_dssp             EEEEETC-SSHHHHHHHHHHHHSTTCEEEEEESCCGGGGGGTTCTTEEEEECCTTT
T ss_pred             EEEEECC-CcHHHHHHHHHHHHCCCCEEEEEeCCCcchhhhccCCCeEEEECccCC
Confidence            3555554 998888777653   4568999997 4444444556899999999865

>d1j6ua1 c.5.1.1 (A:0-88) UDP-N-acetylmuramate-alanine ligase MurC {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Thermotoga maritima [TaxId: 2336]

Probab=91.09  E-value=0.14  Score=27.00  Aligned_cols=57  Identities=14%  Similarity=0.064  Sum_probs=33.5

Q ss_pred             CCchHHHHHHHHHCCCCeEEEeeh-H-HHHHhCCCCCCeeEEEecCCCCCCcccEEEeec
Q 034578           32 GGTGTVLAEIVKSYPHIKGINFDL-Q-HVIATAPTHEGVSHVGGDMFDAIPNADAVFMKV   89 (90)
Q Consensus        32 ~G~G~~~~~l~~~~p~~~~~~~D~-p-~~~~~a~~~~rv~~~~~d~~~~~p~~D~i~l~~   89 (90)
                      ||+|--+.+..-...+.++++.|+ + +..+.-++. .+++..+.-.+.+.++|+|+.+.
T Consensus        10 gG~GMs~LA~~L~~~G~~VsGSD~~~~~~t~~L~~~-Gi~i~~gh~~~~i~~~d~vV~Ss   68 (89)
T d1j6ua1          10 GGIGMSAVALHEFSNGNDVYGSNIEETERTAYLRKL-GIPIFVPHSADNWYDPDLVIKTP   68 (89)
T ss_dssp             TSHHHHHHHHHHHHTTCEEEEECSSCCHHHHHHHHT-TCCEESSCCTTSCCCCSEEEECT
T ss_pred             CHHHHHHHHHHHHhCCCeEEEEeCCCChhHHHHHHC-CCeEEeeecccccCCCCEEEEec
Confidence            456665555444455889999997 3 444432222 35665553223466689988764

>d1rjda_ c.66.1.37 (A:) Leucine carboxy methyltransferase Ppm1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Leucine carboxy methyltransferase Ppm1
domain: Leucine carboxy methyltransferase Ppm1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=91.01  E-value=0.12  Score=33.46  Aligned_cols=54  Identities=15%  Similarity=0.330  Sum_probs=43.4

Q ss_pred             CCeEEEecCCchHHHHHHHHHCCCCeEEEeehHHHHHhCC---------------------------CCCCeeEEEecCC
Q 034578           24 IRSMVDVGGGTGTVLAEIVKSYPHIKGINFDLQHVIATAP---------------------------THEGVSHVGGDMF   76 (90)
Q Consensus        24 ~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~p~~~~~a~---------------------------~~~rv~~~~~d~~   76 (90)
                      ...|+-+|||.=...-.+...+|+++.+-+|+|++++.=+                           ..++.+++..|+.
T Consensus        97 ~~QVV~LGaG~DTr~~Rl~~~~~~~~~~EvD~p~vi~~K~~~i~~~~~l~~~l~~~~~~~~~~~~~~~s~~y~lv~~DL~  176 (328)
T d1rjda_          97 KVQVVNLGCGSDLRMLPLLQMFPHLAYVDIDYNESVELKNSILRESEILRISLGLSKEDTAKSPFLIDQGRYKLAACDLN  176 (328)
T ss_dssp             SEEEEEETCTTCCTHHHHHHHCTTEEEEEEECHHHHHHHHHHHHHSHHHHHHHTCCSSCCCCTTEEEECSSEEEEECCTT
T ss_pred             CcEEEEeCCccchHHHHhhccCCCcEEEECCcHHHHHHHHHHHHhchhhhhhccccccccccccccCCCCCeEEEecCCC
Confidence            4579999999999898998889999999999988765210                           0367888999987


Q ss_pred             C
Q 034578           77 D   77 (90)
Q Consensus        77 ~   77 (90)
                      +
T Consensus       177 d  177 (328)
T d1rjda_         177 D  177 (328)
T ss_dssp             C
T ss_pred             C
Confidence            6

>d2py6a1 c.66.1.56 (A:14-408) Methyltransferase FkbM {Methylobacillus flagellatus [TaxId: 405]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: FkbM-like
domain: Methyltransferase FkbM
species: Methylobacillus flagellatus [TaxId: 405]

Probab=90.48  E-value=0.25  Score=32.66  Aligned_cols=42  Identities=21%  Similarity=0.273  Sum_probs=33.0

Q ss_pred             CCCCCeEEEecCCchHHHHHHHHHCCC--CeEEEeeh-HHHHHhC
Q 034578           21 FNNIRSMVDVGGGTGTVLAEIVKSYPH--IKGINFDL-QHVIATA   62 (90)
Q Consensus        21 ~~~~~~vlDvG~G~G~~~~~l~~~~p~--~~~~~~D~-p~~~~~a   62 (90)
                      +.+...++|||+-.|..+..+++..+.  .+++++|. |...+..
T Consensus       210 l~kn~vfIDVGAniG~~s~~f~~~~~~~~~kV~aFEP~p~n~~~L  254 (395)
T d2py6a1         210 FSDSEKMVDCGASIGESLAGLIGVTKGKFERVWMIEPDRINLQTL  254 (395)
T ss_dssp             CCSSCEEEEETCTTSHHHHHHHHHHTSCCSEEEEECCCHHHHHHH
T ss_pred             cCCCCEEEECCcCCCHHHHHHHHhcCCCCCEEEEEeCCHHHHHHH
Confidence            345679999999999999888877654  58999997 7655443

>d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Bacterial secondary alcohol dehydrogenase
species: Clostridium beijerinckii [TaxId: 1520]

Probab=90.16  E-value=0.34  Score=28.01  Aligned_cols=44  Identities=18%  Similarity=0.025  Sum_probs=34.7

Q ss_pred             CCCCCeEEEecCCc-hHHHHHHHHHCCCCeEEEeeh-HHHHHhCCC
Q 034578           21 FNNIRSMVDVGGGT-GTVLAEIVKSYPHIKGINFDL-QHVIATAPT   64 (90)
Q Consensus        21 ~~~~~~vlDvG~G~-G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~   64 (90)
                      .++..+|+=+|||. |.++..+++..-..+++++|. ++-.+.+++
T Consensus        25 ~~~g~~VlI~GaG~vGl~~~q~ak~~Ga~~Vi~~d~~~~r~~~a~~   70 (174)
T d1jqba2          25 IEMGSSVVVIGIGAVGLMGIAGAKLRGAGRIIGVGSRPICVEAAKF   70 (174)
T ss_dssp             CCTTCCEEEECCSHHHHHHHHHHHTTTCSCEEEECCCHHHHHHHHH
T ss_pred             CCCCCEEEEEcCCcchhhhhhhhhcccccccccccchhhhHHHHHh
Confidence            56677888899986 889999999765557999998 776666665

>d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.71  E-value=0.37  Score=27.47  Aligned_cols=45  Identities=18%  Similarity=0.172  Sum_probs=34.7

Q ss_pred             CCCCCeEEEecCCc-hHHHHHHHHHCCCCeEEEeeh-HHHHHhCCCC
Q 034578           21 FNNIRSMVDVGGGT-GTVLAEIVKSYPHIKGINFDL-QHVIATAPTH   65 (90)
Q Consensus        21 ~~~~~~vlDvG~G~-G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~   65 (90)
                      ..+..+|+=+|+|+ |.++..+++.....++++.|. +.-++.+++.
T Consensus        24 ~~~gd~VlI~G~G~iG~~~~~~a~~~G~~~Vi~~d~~~~rl~~a~~~   70 (171)
T d1pl8a2          24 VTLGHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSATRLSKAKEI   70 (171)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHT
T ss_pred             CCCCCEEEEECCCccHHHHHHHHHHcCCceEEeccCCHHHHHHHHHh
Confidence            55678899999974 667777777766558999998 8888777763

>d1p3da1 c.5.1.1 (A:11-106) UDP-N-acetylmuramate-alanine ligase MurC {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Haemophilus influenzae [TaxId: 727]

Probab=89.32  E-value=0.1  Score=27.82  Aligned_cols=66  Identities=17%  Similarity=0.242  Sum_probs=38.1

Q ss_pred             CCCCCeEEEec-CCchH--HHHHHHHHCCCCeEEEeeh--HHHHHhCCCCCCeeEEEecCCCCCCcccEEEeec
Q 034578           21 FNNIRSMVDVG-GGTGT--VLAEIVKSYPHIKGINFDL--QHVIATAPTHEGVSHVGGDMFDAIPNADAVFMKV   89 (90)
Q Consensus        21 ~~~~~~vlDvG-~G~G~--~~~~l~~~~p~~~~~~~D~--p~~~~~a~~~~rv~~~~~d~~~~~p~~D~i~l~~   89 (90)
                      .....++.=+| ||+|-  ++..+.++  +.++++.|.  ....+..++. .+.+..+.-.+.++..|+|+.+.
T Consensus         5 ~~~~~~ihfiGigG~GMs~LA~~L~~~--G~~VsGSD~~~~~~~~~L~~~-Gi~v~~g~~~~~i~~~d~vV~S~   75 (96)
T d1p3da1           5 MRRVQQIHFIGIGGAGMSGIAEILLNE--GYQISGSDIADGVVTQRLAQA-GAKIYIGHAEEHIEGASVVVVSS   75 (96)
T ss_dssp             CTTCCEEEEETTTSTTHHHHHHHHHHH--TCEEEEEESCCSHHHHHHHHT-TCEEEESCCGGGGTTCSEEEECT
T ss_pred             chhCCEEEEEEECHHHHHHHHHHHHhC--CCEEEEEeCCCChhhhHHHHC-CCeEEECCccccCCCCCEEEECC
Confidence            44556666665 34665  44444444  788999996  2333332222 35555554444566689888764

>d1eg2a_ c.66.1.11 (A:) m.RsrI N6 adenosine-specific DNA methyltransferase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Type II DNA methylase
domain: m.RsrI N6 adenosine-specific DNA methyltransferase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=89.28  E-value=0.28  Score=29.76  Aligned_cols=52  Identities=12%  Similarity=0.098  Sum_probs=41.0

Q ss_pred             hhHHHHHhhcccCCCCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeeh-HHHHHhCCC
Q 034578            7 ITMKAFVSHYKVDGFNNIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDL-QHVIATAPT   64 (90)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~   64 (90)
                      .+.+.+++.+.    .....|||-=+|+|..+.+..+.  +=+++++|+ |...+.|++
T Consensus       195 ~L~~~~I~~~s----~~gdiVLDpF~GSGTT~~Aa~~l--gR~~ig~El~~~y~~~a~~  247 (279)
T d1eg2a_         195 AVIERLVRALS----HPGSTVLDFFAGSGVTARVAIQE--GRNSICTDAAPVFKEYYQK  247 (279)
T ss_dssp             HHHHHHHHHHS----CTTCEEEETTCTTCHHHHHHHHH--TCEEEEEESSTHHHHHHHH
T ss_pred             hHHHHHHHhhc----CCCCEEEecCCCCcHHHHHHHHh--CCeEEEEeCCHHHHHHHHH
Confidence            45667777665    25679999999999999998887  457999999 887776653

>d1o9ga_ c.66.1.29 (A:) rRNA methyltransferase AviRa {Streptomyces viridochromogenes [TaxId: 1938]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA methyltransferase AviRa
domain: rRNA methyltransferase AviRa
species: Streptomyces viridochromogenes [TaxId: 1938]

Probab=88.53  E-value=0.24  Score=30.88  Aligned_cols=36  Identities=11%  Similarity=-0.013  Sum_probs=25.0

Q ss_pred             hHHHHHhhccc-CCCCCCCeEEEecCCchHHHHHHHH
Q 034578            8 TMKAFVSHYKV-DGFNNIRSMVDVGGGTGTVLAEIVK   43 (90)
Q Consensus         8 ~~~~~~~~~~~-~~~~~~~~vlDvG~G~G~~~~~l~~   43 (90)
                      ++..++...-| ..+.+...++|--||||.+.++.+.
T Consensus        34 Laa~il~~al~l~~w~~~~~LlDPmCGSGTilIEAAl   70 (249)
T d1o9ga_          34 LATEIFQRALARLPGDGPVTLWDPCCGSGYLLTVLGL   70 (249)
T ss_dssp             HHHHHHHHHHHTSSCCSCEEEEETTCTTSHHHHHHHH
T ss_pred             HHHHHHHHHhhhhcCCCCCceeccccCccHHHHHHHH
Confidence            45555544321 0256677899999999999998876

>d1pjqa1 c.2.1.11 (A:1-113) Siroheme synthase CysG, domain 1 {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Siroheme synthase N-terminal domain-like
domain: Siroheme synthase CysG, domain 1
species: Salmonella typhimurium [TaxId: 90371]

Probab=88.48  E-value=0.92  Score=24.07  Aligned_cols=65  Identities=14%  Similarity=0.012  Sum_probs=39.7

Q ss_pred             CCCeEEEecCCchHHHHHHHHHCCCCeEEEeeh---HHHHHhCCCCCCeeEEEecCCC-CCCcccEEEee
Q 034578           23 NIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDL---QHVIATAPTHEGVSHVGGDMFD-AIPNADAVFMK   88 (90)
Q Consensus        23 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~---p~~~~~a~~~~rv~~~~~d~~~-~~p~~D~i~l~   88 (90)
                      ..+++|=||+|.=.....-.-.--+++++.++.   ++..+.+. ..++++....+.+ .+..+++++..
T Consensus        11 ~~k~vlVvG~G~va~~ka~~ll~~ga~v~v~~~~~~~~~~~~~~-~~~i~~~~~~~~~~dl~~~~lv~~a   79 (113)
T d1pjqa1          11 RDRDCLIVGGGDVAERKARLLLEAGARLTVNALTFIPQFTVWAN-EGMLTLVEGPFDETLLDSCWLAIAA   79 (113)
T ss_dssp             BTCEEEEECCSHHHHHHHHHHHHTTBEEEEEESSCCHHHHHHHT-TTSCEEEESSCCGGGGTTCSEEEEC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEeccCChHHHHHHh-cCCceeeccCCCHHHhCCCcEEeec
Confidence            457899999986443222221123567777764   44444443 4678888877765 45667777654

>d2jfga1 c.5.1.1 (A:1-93) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD
species: Escherichia coli [TaxId: 562]

Probab=88.04  E-value=0.14  Score=26.73  Aligned_cols=62  Identities=21%  Similarity=0.241  Sum_probs=35.8

Q ss_pred             CCeEEEecCC-chHHHHHHHHHCCCCeEEEeeh-H--HHHHhCCCCCCeeEEEecCCC-CCCcccEEEee
Q 034578           24 IRSMVDVGGG-TGTVLAEIVKSYPHIKGINFDL-Q--HVIATAPTHEGVSHVGGDMFD-AIPNADAVFMK   88 (90)
Q Consensus        24 ~~~vlDvG~G-~G~~~~~l~~~~p~~~~~~~D~-p--~~~~~a~~~~rv~~~~~d~~~-~~p~~D~i~l~   88 (90)
                      .++|+=+|-| ||.-+..++.+. +.++++.|. +  ...+..+  ..+.+..+.+.+ .+..+|+++.+
T Consensus         5 ~K~v~ViGlG~sG~s~a~~L~~~-g~~v~~~D~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~d~vi~S   71 (93)
T d2jfga1           5 GKNVVIIGLGLTGLSCVDFFLAR-GVTPRVMDTRMTPPGLDKLP--EAVERHTGSLNDEWLMAADLIVAS   71 (93)
T ss_dssp             TCCEEEECCSHHHHHHHHHHHHT-TCCCEEEESSSSCTTGGGSC--TTSCEEESBCCHHHHHHCSEEEEC
T ss_pred             CCEEEEEeECHHHHHHHHHHHHC-CCEEEEeeCCcCchhHHHHh--hccceeecccchhhhccCCEEEEC
Confidence            3567888876 776555555543 688899996 3  2333333  334455454433 23447888875

>d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Benzyl alcohol dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=87.62  E-value=0.53  Score=26.94  Aligned_cols=44  Identities=20%  Similarity=0.157  Sum_probs=33.9

Q ss_pred             CCCCCeEEEecCC-chHHHHHHHHHCCCCeEEEeeh-HHHHHhCCC
Q 034578           21 FNNIRSMVDVGGG-TGTVLAEIVKSYPHIKGINFDL-QHVIATAPT   64 (90)
Q Consensus        21 ~~~~~~vlDvG~G-~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~   64 (90)
                      .++..+|+=+|+| -|.++..+++.....++++.|. +.-++.+++
T Consensus        26 ~~~g~~VlI~G~G~iG~~~~~~ak~~g~~~v~~~~~~~~k~~~a~~   71 (174)
T d1f8fa2          26 VTPASSFVTWGAGAVGLSALLAAKVCGASIIIAVDIVESRLELAKQ   71 (174)
T ss_dssp             CCTTCEEEEESCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHH
T ss_pred             CCCCCEEEEeCCCHHHhhhhhcccccccceeeeeccHHHHHHHHHH
Confidence            5667889989987 4567888888877777888897 777776665

>d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=87.21  E-value=0.84  Score=25.64  Aligned_cols=44  Identities=14%  Similarity=0.109  Sum_probs=34.3

Q ss_pred             CCCCCeEEEecCC-chHHHHHHHHHCCCCeEEEeeh-HHHHHhCCCC
Q 034578           21 FNNIRSMVDVGGG-TGTVLAEIVKSYPHIKGINFDL-QHVIATAPTH   65 (90)
Q Consensus        21 ~~~~~~vlDvG~G-~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~   65 (90)
                      ..+..+|+=+|+| -|.++..+++.. ..+++++|. ++-++.+++.
T Consensus        25 ~~~g~~VlV~GaG~vG~~~~~~ak~~-G~~Vi~~~~~~~~~~~a~~~   70 (166)
T d1llua2          25 ARPGQWVAISGIGGLGHVAVQYARAM-GLHVAAIDIDDAKLELARKL   70 (166)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHT
T ss_pred             CCCCCEEEEeeccccHHHHHHHHHHc-CCccceecchhhHHHhhhcc
Confidence            5566788889987 577888888876 589999998 7777777654

>d1orra_ c.2.1.2 (A:) CDP-tyvelose-2-epimerase {Salmonella typhi [TaxId: 90370]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: CDP-tyvelose-2-epimerase
species: Salmonella typhi [TaxId: 90370]

Probab=87.01  E-value=0.51  Score=28.95  Aligned_cols=51  Identities=20%  Similarity=0.275  Sum_probs=34.4

Q ss_pred             eEEEecCCchHHHHHHHHHC--CCCeEEEeeh---H---HHHHhCCCCCCeeEEEecCCC
Q 034578           26 SMVDVGGGTGTVLAEIVKSY--PHIKGINFDL---Q---HVIATAPTHEGVSHVGGDMFD   77 (90)
Q Consensus        26 ~vlDvG~G~G~~~~~l~~~~--p~~~~~~~D~---p---~~~~~a~~~~rv~~~~~d~~~   77 (90)
                      +|| |=||+|.++..+.+..  .+.+++++|.   .   .-++.....++++++.+|+.+
T Consensus         2 KIL-VTGatGfIGs~lv~~Ll~~g~~V~~id~~~~~~~~~~~~~~~~~~~~~~i~~Di~~   60 (338)
T d1orra_           2 KLL-ITGGCGFLGSNLASFALSQGIDLIVFDNLSRKGATDNLHWLSSLGNFEFVHGDIRN   60 (338)
T ss_dssp             EEE-EETTTSHHHHHHHHHHHHTTCEEEEEECCCSTTHHHHHHHHHTTCCCEEEECCTTC
T ss_pred             EEE-EECCCcHHHHHHHHHHHHCcCEEEEEECCCcccchhHHHHhhccCCcEEEEcccCC
Confidence            466 4456899887776654  4678999982   1   122233345789999999986

>d1fcda1 c.3.1.5 (A:1-114,A:256-327) Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit {Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit
species: Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]

Probab=86.72  E-value=0.69  Score=25.55  Aligned_cols=32  Identities=34%  Similarity=0.366  Sum_probs=26.2

Q ss_pred             CCeEEEecCCchH--HHHHHHHHCCCCeEEEeeh
Q 034578           24 IRSMVDVGGGTGT--VLAEIVKSYPHIKGINFDL   55 (90)
Q Consensus        24 ~~~vlDvG~G~G~--~~~~l~~~~p~~~~~~~D~   55 (90)
                      .++|+=||+|...  ++..|.+..|+.+++.+|.
T Consensus         2 gkrivIvGgG~~G~e~A~~l~~~~~~~~Vtlie~   35 (186)
T d1fcda1           2 GRKVVVVGGGTGGATAAKYIKLADPSIEVTLIEP   35 (186)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHCTTSEEEEECS
T ss_pred             CCcEEEECccHHHHHHHHHHHHcCCCCcEEEEEC
Confidence            4689999999766  5667778889999999984

>d1cdoa2 c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Cod (Gadus callarias) [TaxId: 8053]

Probab=86.48  E-value=0.64  Score=26.37  Aligned_cols=46  Identities=17%  Similarity=0.059  Sum_probs=34.9

Q ss_pred             CCCCCeEEEecCCc-hHHHHHHHHHCCCCeEEEeeh-HHHHHhCCCCC
Q 034578           21 FNNIRSMVDVGGGT-GTVLAEIVKSYPHIKGINFDL-QHVIATAPTHE   66 (90)
Q Consensus        21 ~~~~~~vlDvG~G~-G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~~   66 (90)
                      .++..+|+=+|+|. |..+..+++..-..+++++|. ++-++.+++.+
T Consensus        26 ~k~g~~VlI~G~Gg~g~~~~~~~~~~g~~~Vi~~~~~~~rl~~a~~~G   73 (175)
T d1cdoa2          26 VEPGSTCAVFGLGAVGLAAVMGCHSAGAKRIIAVDLNPDKFEKAKVFG   73 (175)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTT
T ss_pred             CCCCCEEEEEecCCccchHHHHHHHHhhchheeecchHHHHHHHHHcC
Confidence            56678899999887 556666777777778999998 77777776643

>d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Frog (Rana perezi) [TaxId: 8403]

Probab=86.46  E-value=0.45  Score=27.44  Aligned_cols=46  Identities=13%  Similarity=-0.044  Sum_probs=35.9

Q ss_pred             CCCCCeEEEecCCc-hHHHHHHHHHCCCCeEEEeeh-HHHHHhCCCCC
Q 034578           21 FNNIRSMVDVGGGT-GTVLAEIVKSYPHIKGINFDL-QHVIATAPTHE   66 (90)
Q Consensus        21 ~~~~~~vlDvG~G~-G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~~   66 (90)
                      ..+..+|+=+|+|. |.++..+++..-..++++.|. ++-++.+++.+
T Consensus        25 ~~~G~~VlV~GaGgvGl~a~~~ak~~G~~~Vi~~d~~~~kl~~a~~lG   72 (174)
T d1p0fa2          25 VTPGSTCAVFGLGGVGFSAIVGCKAAGASRIIGVGTHKDKFPKAIELG   72 (174)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHTT
T ss_pred             CCCCCEEEEECCCchhHHHHHHHHHcCCceeeccCChHHHHHHHHHcC
Confidence            56678999999984 557777888777778999998 77777777643

>d1id1a_ c.2.1.9 (A:) Rck domain from putative potassium channel Kch {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Rck domain from putative potassium channel Kch
species: Escherichia coli [TaxId: 562]

Probab=85.54  E-value=0.46  Score=26.56  Aligned_cols=61  Identities=11%  Similarity=0.116  Sum_probs=35.1

Q ss_pred             CeEEEecCCchHHHHHHHHHC--CCCeEEEeeh-HHH-HHhCCC--CCCeeEEEecCCCC-------CCcccEEEe
Q 034578           25 RSMVDVGGGTGTVLAEIVKSY--PHIKGINFDL-QHV-IATAPT--HEGVSHVGGDMFDA-------IPNADAVFM   87 (90)
Q Consensus        25 ~~vlDvG~G~G~~~~~l~~~~--p~~~~~~~D~-p~~-~~~a~~--~~rv~~~~~d~~~~-------~p~~D~i~l   87 (90)
                      .+++=+|+|  .++..+++..  .+..++.+|. |+. .+...+  ...+.++.||..++       +..+|.++.
T Consensus         4 nHiII~G~g--~~g~~l~~~L~~~~~~v~vId~d~~~~~~~~~~~~~~~~~vi~Gd~~d~~~L~~a~i~~a~~vi~   77 (153)
T d1id1a_           4 DHFIVCGHS--ILAINTILQLNQRGQNVTVISNLPEDDIKQLEQRLGDNADVIPGDSNDSSVLKKAGIDRCRAILA   77 (153)
T ss_dssp             SCEEEECCS--HHHHHHHHHHHHTTCCEEEEECCCHHHHHHHHHHHCTTCEEEESCTTSHHHHHHHTTTTCSEEEE
T ss_pred             CEEEEECCC--HHHHHHHHHHHHcCCCEEEEeccchhHHHHHHHhhcCCcEEEEccCcchHHHHHhccccCCEEEE
Confidence            457777775  4444444331  2566777876 532 222221  35689999998872       334777765

>d1ulsa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermus thermophilus [TaxId: 274]

Probab=85.54  E-value=0.93  Score=27.40  Aligned_cols=53  Identities=15%  Similarity=0.211  Sum_probs=36.5

Q ss_pred             CCeEEEecCCchHHHHHHHHHC--CCCeEEEeeh-HHHHHhCCCCCCeeEEEecCCC
Q 034578           24 IRSMVDVGGGTGTVLAEIVKSY--PHIKGINFDL-QHVIATAPTHEGVSHVGGDMFD   77 (90)
Q Consensus        24 ~~~vlDvG~G~G~~~~~l~~~~--p~~~~~~~D~-p~~~~~a~~~~rv~~~~~d~~~   77 (90)
                      .+++|=-|+++| ++.++++++  .+.+++..|+ ++.++.+.+.-+.+++..|+.+
T Consensus         5 gK~~lITGas~G-IG~aia~~l~~~G~~V~~~~r~~~~l~~~~~~~~~~~~~~Dv~~   60 (242)
T d1ulsa_           5 DKAVLITGAAHG-IGRATLELFAKEGARLVACDIEEGPLREAAEAVGAHPVVMDVAD   60 (242)
T ss_dssp             TCEEEEESTTSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTTTCEEEECCTTC
T ss_pred             CCEEEEeCCCCH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHcCCeEEEEecCC
Confidence            466777777665 555555554  3688999998 7666665555567788888876

>d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=85.15  E-value=0.78  Score=25.89  Aligned_cols=50  Identities=22%  Similarity=0.366  Sum_probs=37.0

Q ss_pred             HHhhcccCCCCCCCeEEEecC--CchHHHHHHHHHCCCCeEEEeeh-HHHHHhCCC
Q 034578           12 FVSHYKVDGFNNIRSMVDVGG--GTGTVLAEIVKSYPHIKGINFDL-QHVIATAPT   64 (90)
Q Consensus        12 ~~~~~~~~~~~~~~~vlDvG~--G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~   64 (90)
                      .++..+   ..+..+|+=+|+  |.|.++..+++.....++++.|. ++-.+.+++
T Consensus        19 al~~~~---~~~g~~vlV~G~~G~vG~~~~~~~~~~g~~~V~~~~~~~~~~~~~~~   71 (170)
T d1jvba2          19 AVRKAS---LDPTKTLLVVGAGGGLGTMAVQIAKAVSGATIIGVDVREEAVEAAKR   71 (170)
T ss_dssp             HHHHTT---CCTTCEEEEETTTSHHHHHHHHHHHHHTCCEEEEEESSHHHHHHHHH
T ss_pred             HHHHhC---CCCCCEEEEEeccccceeeeeecccccccccccccccchhhHHHHHH
Confidence            344444   566789999996  46778888888877788999997 766666554

>d1seza1 c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen oxidase {Tobacco (Nicotiana tabacum) [TaxId: 4097]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Tobacco (Nicotiana tabacum) [TaxId: 4097]

Probab=84.56  E-value=0.78  Score=26.87  Aligned_cols=31  Identities=13%  Similarity=0.204  Sum_probs=26.0

Q ss_pred             CeEEEecCCchHHHHHHHHHCCCCeEEEeeh
Q 034578           25 RSMVDVGGGTGTVLAEIVKSYPHIKGINFDL   55 (90)
Q Consensus        25 ~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~   55 (90)
                      ++|+=||+|.+-++.+...+-.+.+++++|.
T Consensus         2 KkV~IIGaG~aGL~aA~~La~~G~~V~vlE~   32 (373)
T d1seza1           2 KRVAVIGAGVSGLAAAYKLKIHGLNVTVFEA   32 (373)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTTSCEEEEECS
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCCEEEEeC
Confidence            5799999998887777777767889999994

>d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.78  E-value=1.1  Score=25.36  Aligned_cols=44  Identities=16%  Similarity=0.186  Sum_probs=33.9

Q ss_pred             CCCCCeEEEecC--CchHHHHHHHHHCCCCeEEEeeh-HHHHHhCCCC
Q 034578           21 FNNIRSMVDVGG--GTGTVLAEIVKSYPHIKGINFDL-QHVIATAPTH   65 (90)
Q Consensus        21 ~~~~~~vlDvG~--G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~   65 (90)
                      +.+..+||-.|+  |.|.++..+++.. ++++++.+. ++-.+.+++.
T Consensus        26 ~~~g~~VlV~Ga~G~vG~~aiq~a~~~-G~~vi~~~~~~~~~~~~~~~   72 (174)
T d1yb5a2          26 VKAGESVLVHGASGGVGLAACQIARAY-GLKILGTAGTEEGQKIVLQN   72 (174)
T ss_dssp             CCTTCEEEEETCSSHHHHHHHHHHHHT-TCEEEEEESSHHHHHHHHHT
T ss_pred             CCCCCEEEEEecccccccccccccccc-Cccccccccccccccccccc
Confidence            567789999985  6788999999886 578888886 7666666553

>d2iida1 c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: L-aminoacid oxidase
species: Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]

Probab=82.98  E-value=1.1  Score=26.75  Aligned_cols=35  Identities=20%  Similarity=0.144  Sum_probs=26.5

Q ss_pred             CCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeeh
Q 034578           21 FNNIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDL   55 (90)
Q Consensus        21 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~   55 (90)
                      ...+++|+=||+|.+.++.+...+-.+.+++++|.
T Consensus        27 ~~~pkkV~IIGaG~aGLsaA~~L~~~G~~V~vlE~   61 (370)
T d2iida1          27 TSNPKHVVIVGAGMAGLSAAYVLAGAGHQVTVLEA   61 (370)
T ss_dssp             CSSCCEEEEECCBHHHHHHHHHHHHHTCEEEEECS
T ss_pred             CCCCCeEEEECCCHHHHHHHHHHHHCCCCEEEEeC
Confidence            34567999999998887766544444789999994

>d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: L-alanine dehydrogenase
species: Phormidium lapideum [TaxId: 32060]

Probab=82.29  E-value=2.3  Score=24.74  Aligned_cols=64  Identities=22%  Similarity=0.234  Sum_probs=41.7

Q ss_pred             CCCeEEEecCC-chHHHHHHHHHCCCCeEEEeeh-HHHHHhCCC--CCCeeEEEecCC---CCCCcccEEEe
Q 034578           23 NIRSMVDVGGG-TGTVLAEIVKSYPHIKGINFDL-QHVIATAPT--HEGVSHVGGDMF---DAIPNADAVFM   87 (90)
Q Consensus        23 ~~~~vlDvG~G-~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~--~~rv~~~~~d~~---~~~p~~D~i~l   87 (90)
                      ++.+++=+|+| .|.-++..+++. .++++++|. ++.+++.+.  ..++++...+-.   +.+.++|+++-
T Consensus        31 ~pa~V~ViGaGvaG~~A~~~A~~l-GA~V~~~D~~~~~l~~l~~~~~~~~~~~~~~~~~l~~~~~~aDivI~  101 (168)
T d1pjca1          31 KPGKVVILGGGVVGTEAAKMAVGL-GAQVQIFDINVERLSYLETLFGSRVELLYSNSAEIETAVAEADLLIG  101 (168)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHGGGSEEEECCHHHHHHHHHTCSEEEE
T ss_pred             CCcEEEEECCChHHHHHHHHHhhC-CCEEEEEeCcHHHHHHHHHhhcccceeehhhhhhHHHhhccCcEEEE
Confidence            46899999999 577777877776 689999998 777765543  233444322211   12344777763

>d2voua1 c.3.1.2 (A:2-163,A:292-394) Dihydroxypyridine hydroxylase DhpH {Arthrobacter nicotinovorans [TaxId: 29320]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Dihydroxypyridine hydroxylase DhpH
species: Arthrobacter nicotinovorans [TaxId: 29320]

Probab=82.26  E-value=0.96  Score=26.65  Aligned_cols=33  Identities=12%  Similarity=0.162  Sum_probs=26.3

Q ss_pred             CCCeEEEecCCchHHHHHHHHHCCCCeEEEeeh
Q 034578           23 NIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDL   55 (90)
Q Consensus        23 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~   55 (90)
                      ...+|+=||+|..-++.++.-+-.+.+++++|.
T Consensus         3 ~~~kV~IiGaG~aGl~~A~~L~~~G~~v~v~Er   35 (265)
T d2voua1           3 TTDRIAVVGGSISGLTAALMLRDAGVDVDVYER   35 (265)
T ss_dssp             CCSEEEEECCSHHHHHHHHHHHHTTCEEEEECS
T ss_pred             CCCcEEEECcCHHHHHHHHHHHHCCCCEEEEeC
Confidence            457899999998776666665556899999995

>d2uyoa1 c.66.1.57 (A:14-310) Putative methyltransferase ML2640 {Mycobacterium leprae [TaxId: 1769]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: ML2640-like
domain: Putative methyltransferase ML2640
species: Mycobacterium leprae [TaxId: 1769]

Probab=81.81  E-value=0.68  Score=29.23  Aligned_cols=55  Identities=16%  Similarity=0.115  Sum_probs=39.2

Q ss_pred             CCCeEEEecCCchHHHHHHHHHCCCCeEEEeehHHHHHhCC---------CCCCeeEEEecCCCC
Q 034578           23 NIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDLQHVIATAP---------THEGVSHVGGDMFDA   78 (90)
Q Consensus        23 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~p~~~~~a~---------~~~rv~~~~~d~~~~   78 (90)
                      +...|+.+|||-=.-...+ ...+++++.-+|+|.+++.-+         ...+..++..|+.++
T Consensus        89 g~~qvV~LGaGlDTr~~Rl-~~~~~~~~~EvD~p~vi~~K~~~l~~~~~~~~~~~~~v~~Dl~~~  152 (297)
T d2uyoa1          89 GIRQFVILASGLDSRAYRL-DWPTGTTVYEIDQPKVLAYKSTTLAEHGVTPTADRREVPIDLRQD  152 (297)
T ss_dssp             TCCEEEEETCTTCCHHHHS-CCCTTCEEEEEECHHHHHHHHHHHHHTTCCCSSEEEEEECCTTSC
T ss_pred             CCCeEEEeCcccCChhhhc-CCCcCceEEEcCChHHHHHHHHHHHhcCCCCCceEEEecccccch
Confidence            4567888999987777666 335788899999998876322         135678888887653

>d1oc2a_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus suis, serotype 2 [TaxId: 1307]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: dTDP-glucose 4,6-dehydratase (RmlB)
species: Streptococcus suis, serotype 2 [TaxId: 1307]

Probab=81.34  E-value=1.7  Score=26.96  Aligned_cols=53  Identities=21%  Similarity=0.280  Sum_probs=33.1

Q ss_pred             CCeEEEecCCchHHHH----HHHHHCCCCeEEEeeh-HHHHHhC----CCCCCeeEEEecCCC
Q 034578           24 IRSMVDVGGGTGTVLA----EIVKSYPHIKGINFDL-QHVIATA----PTHEGVSHVGGDMFD   77 (90)
Q Consensus        24 ~~~vlDvG~G~G~~~~----~l~~~~p~~~~~~~D~-p~~~~~a----~~~~rv~~~~~d~~~   77 (90)
                      ..+||=.| |+|.++.    .|.++...++++++|. ...-...    ....+++++.+|+.+
T Consensus         2 ~mkILVTG-gtGfIGs~lv~~L~~~g~~v~v~~~d~~~~~~~~~~~~~~~~~~i~~~~~Di~d   63 (346)
T d1oc2a_           2 FKNIIVTG-GAGFIGSNFVHYVYNNHPDVHVTVLDKLTYAGNKANLEAILGDRVELVVGDIAD   63 (346)
T ss_dssp             CSEEEEET-TTSHHHHHHHHHHHHHCTTCEEEEEECCCTTCCGGGTGGGCSSSEEEEECCTTC
T ss_pred             cCEEEEeC-CCcHHHHHHHHHHHHCCCCeEEEEEeCCCccccHHHHHHhhcCCeEEEEccCCC
Confidence            34677666 4886554    4456667788999984 1111111    124789999999876

>d1rkxa_ c.2.1.2 (A:) CDP-glucose-4,6-dehydratase {Yersinia pseudotuberculosis [TaxId: 633]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: CDP-glucose-4,6-dehydratase
species: Yersinia pseudotuberculosis [TaxId: 633]

Probab=81.26  E-value=2.9  Score=25.69  Aligned_cols=53  Identities=19%  Similarity=0.134  Sum_probs=36.3

Q ss_pred             CCeEEEecCCchHHHHHHHHHC--CCCeEEEeeh-H----HHHHhCCCCCCeeEEEecCCC
Q 034578           24 IRSMVDVGGGTGTVLAEIVKSY--PHIKGINFDL-Q----HVIATAPTHEGVSHVGGDMFD   77 (90)
Q Consensus        24 ~~~vlDvG~G~G~~~~~l~~~~--p~~~~~~~D~-p----~~~~~a~~~~rv~~~~~d~~~   77 (90)
                      ..+||=.|+ +|.++..+++..  .+.++.++|+ +    ...+..+..++++++.+|+.+
T Consensus         8 ~KkILVTG~-tGfIGs~lv~~Ll~~g~~V~~~~r~~~~~~~~~~~~~~~~~i~~~~~Dl~d   67 (356)
T d1rkxa_           8 GKRVFVTGH-TGFKGGWLSLWLQTMGATVKGYSLTAPTVPSLFETARVADGMQSEIGDIRD   67 (356)
T ss_dssp             TCEEEEETT-TSHHHHHHHHHHHHTTCEEEEEESSCSSSSCHHHHTTTTTTSEEEECCTTC
T ss_pred             CCEEEEECC-CCHHHHHHHHHHHHCCCEEEEEECCCCccHHHHhhhhcccCCeEEEeeccC
Confidence            477887765 687776665543  3567888886 2    234444556789999999976

>d2bgka1 c.2.1.2 (A:11-278) Rhizome secoisolariciresinol dehydrogenase {Mayapple (Podophyllum peltatum) [TaxId: 35933]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Rhizome secoisolariciresinol dehydrogenase
species: Mayapple (Podophyllum peltatum) [TaxId: 35933]

Probab=81.18  E-value=2.3  Score=25.82  Aligned_cols=53  Identities=17%  Similarity=0.146  Sum_probs=34.8

Q ss_pred             CCeEEEecCCchHHHHHHHHHC--CCCeEEEeeh-HHHHHhC----CCCCCeeEEEecCCC
Q 034578           24 IRSMVDVGGGTGTVLAEIVKSY--PHIKGINFDL-QHVIATA----PTHEGVSHVGGDMFD   77 (90)
Q Consensus        24 ~~~vlDvG~G~G~~~~~l~~~~--p~~~~~~~D~-p~~~~~a----~~~~rv~~~~~d~~~   77 (90)
                      .+++|=-|+++| ++.++++++  .+.++++.|+ ++.++.+    ....++.++..|+.+
T Consensus         6 gKvalITGas~G-IG~aia~~la~~Ga~V~i~~r~~~~~~~~~~~l~~~~~~~~~~~Dv~~   65 (268)
T d2bgka1           6 DKVAIITGGAGG-IGETTAKLFVRYGAKVVIADIADDHGQKVCNNIGSPDVISFVHCDVTK   65 (268)
T ss_dssp             TCEEEEESTTSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHCCTTTEEEEECCTTC
T ss_pred             CCEEEEeCCCcH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhcCCCceEEEEccCCC
Confidence            467777787665 455555443  4688999997 5443332    335678888999876

>d2fzwa2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=80.87  E-value=1.1  Score=25.30  Aligned_cols=44  Identities=18%  Similarity=0.097  Sum_probs=33.7

Q ss_pred             CCCCCeEEEecCC-chHHHHHHHHHCCCCeEEEeeh-HHHHHhCCC
Q 034578           21 FNNIRSMVDVGGG-TGTVLAEIVKSYPHIKGINFDL-QHVIATAPT   64 (90)
Q Consensus        21 ~~~~~~vlDvG~G-~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~   64 (90)
                      .++..+|+=.|+| .|.++..+++..-..++++.|. ++-.+.+++
T Consensus        26 ~~~G~tVlI~GaGGvG~~aiq~ak~~G~~~vi~~~~~~~k~~~ak~   71 (176)
T d2fzwa2          26 LEPGSVCAVFGLGGVGLAVIMGCKVAGASRIIGVDINKDKFARAKE   71 (176)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHH
T ss_pred             CCCCCEEEEecchhHHHHHHHHHHHHhcCceEEEcccHHHHHHHHH
Confidence            5667888888775 5668888888887778899987 666666665

>d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase
species: Arthrobacter, strain 1c [TaxId: 1663]

Probab=80.85  E-value=0.33  Score=27.61  Aligned_cols=39  Identities=13%  Similarity=0.151  Sum_probs=23.9

Q ss_pred             CeEEEecCCchHHHHHHHHHCCCCeEEEeeh-HHHHHhCC
Q 034578           25 RSMVDVGGGTGTVLAEIVKSYPHIKGINFDL-QHVIATAP   63 (90)
Q Consensus        25 ~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~   63 (90)
                      .++.=+|+|.-..+.+..-..-+.+++++|. |+-++..+
T Consensus         2 k~iaIiGaG~~G~~~A~~l~~~G~~V~~~~r~~~~~~~~~   41 (184)
T d1bg6a2           2 KTYAVLGLGNGGHAFAAYLALKGQSVLAWDIDAQRIKEIQ   41 (184)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHH
T ss_pred             CEEEEECccHHHHHHHHHHHHCCCEEEEEECCHHHHHHHH
Confidence            4678889985443333222223578999998 76555543

>d1ps9a3 c.4.1.1 (A:331-465,A:628-671) 2,4-dienoyl-CoA reductase, middle domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: 2,4-dienoyl-CoA reductase, middle domain
species: Escherichia coli [TaxId: 562]

Probab=80.65  E-value=1.9  Score=24.99  Aligned_cols=34  Identities=18%  Similarity=0.157  Sum_probs=29.4

Q ss_pred             CCCCeEEEecCCchHHHHHHHHHCCCCeEEEeeh
Q 034578           22 NNIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDL   55 (90)
Q Consensus        22 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~   55 (90)
                      ...++|+=||+|...+..+...+....+++.+|.
T Consensus        41 ~~~k~V~IIGaGPAGL~AA~~la~~G~~Vtl~E~   74 (179)
T d1ps9a3          41 VQKKNLAVVGAGPAGLAFAINAAARGHQVTLFDA   74 (179)
T ss_dssp             SSCCEEEEECCSHHHHHHHHHHHTTTCEEEEEES
T ss_pred             CCCcEEEEECccHHHHHHHHHHHhhccceEEEec
Confidence            3468999999999998888888777899999996