Citrus Sinensis ID: 034603

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------9
MKHFEDMVLAGKLDEAEKYLSGFTQVHENMLSTKTYFELRRQKFLEALDKHERVKALDILMKDIKAFSTYNEEVFKEASLLLPLENFSC
cHHHHHHHHcccHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHccccccc
ccHHHHHHHcccHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHccccc
MKHFEDMVLAGKLDEAEKYLSGFTQVHENMLSTKTYFELRRQKFLEALDKHERVKALDILMKDIKAFSTYNEEVFKEAslllplenfsc
MKHFEDMVLAGKLDEAEKYLSGFTQVHENMLSTKTYFELRRQKFLEALDKHERVKALDILMKDIKAFSTYNEEVFKEaslllplenfsc
MKHFEDMVLAGKLDEAEKYLSGFTQVHENMLSTKTYFELRRQKFLEALDKHERVKALDILMKDIKAFSTYNEEVFKEASLLLPLENFSC
********LAGKLDEAEKYLSGFTQVHENMLSTKTYFELRRQKFLEALDKHERVKALDILMKDIKAFSTYNEEVFKEASLLLPL*****
**HFEDMVLAGKLDEAEKYLSGFTQVHENMLSTKTYFELRRQKFLEALDKHERVKALDILMKDIKAFSTYNEEVFKEASLLLPLENFSC
MKHFEDMVLAGKLDEAEKYLSGFTQVHENMLSTKTYFELRRQKFLEALDKHERVKALDILMKDIKAFSTYNEEVFKEASLLLPLENFSC
MKHFEDMVLAGKLDEAEKYLSGFTQVHENMLSTKTYFELRRQKFLEALDKHERVKALDILMKDIKAFSTYNEEVFKEASLLLPLENFSC
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MKHFEDMVLAGKLDEAEKYLSGFTQVHENMLSTKTYFELRRQKFLEALDKHERVKALDILMKDIKAFSTYNEEVFKEASLLLPLENFSC
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query89 2.2.26 [Sep-21-2011]
Q94AI7 1131 Protein TOPLESS OS=Arabid yes no 0.977 0.076 0.655 2e-28
Q0WV90 1120 Topless-related protein 1 no no 0.977 0.077 0.643 5e-28
Q27GK7 1135 Topless-related protein 4 no no 0.977 0.076 0.597 2e-26
Q9LRZ0 1131 Topless-related protein 2 no no 0.977 0.076 0.586 4e-26
Q84JM4 1108 Topless-related protein 3 no no 0.966 0.077 0.546 2e-24
>sp|Q94AI7|TPL_ARATH Protein TOPLESS OS=Arabidopsis thaliana GN=TPL PE=1 SV=1 Back     alignment and function desciption
 Score =  124 bits (310), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 57/87 (65%), Positives = 71/87 (81%)

Query: 1   MKHFEDMVLAGKLDEAEKYLSGFTQVHENMLSTKTYFELRRQKFLEALDKHERVKALDIL 60
           MK+FED V  G  DE EKYLSGFT+V +N  S K +FE+R+QK+LEALDKH+R KA+DIL
Sbjct: 38  MKYFEDEVHNGNWDEVEKYLSGFTKVDDNRYSMKIFFEIRKQKYLEALDKHDRPKAVDIL 97

Query: 61  MKDIKAFSTYNEEVFKEASLLLPLENF 87
           +KD+K FST+NEE+FKE + LL LENF
Sbjct: 98  VKDLKVFSTFNEELFKEITQLLTLENF 124
Transcriptional corepressor. May repress the expression of root-promoting genes in the top half of the embryo to allow proper differentiation of the shoot pole during the transition stage of embryogenesis. Regulates the expression of PLT1 and PLT2. Negative regulator of jasmonate responses. Negative regulator of auxin responses.
Arabidopsis thaliana (taxid: 3702)
>sp|Q0WV90|TPR1_ARATH Topless-related protein 1 OS=Arabidopsis thaliana GN=TPR1 PE=1 SV=3 Back     alignment and function description
>sp|Q27GK7|TPR4_ARATH Topless-related protein 4 OS=Arabidopsis thaliana GN=TPR4 PE=1 SV=2 Back     alignment and function description
>sp|Q9LRZ0|TPR2_ARATH Topless-related protein 2 OS=Arabidopsis thaliana GN=TPR2 PE=1 SV=2 Back     alignment and function description
>sp|Q84JM4|TPR3_ARATH Topless-related protein 3 OS=Arabidopsis thaliana GN=TPR3 PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query89
37806272 1150 WD-40 repeat protein-like [Oryza sativa 0.977 0.075 0.620 3e-27
304555573 1141 ramosa 1 enhancer locus 2 [Zea mays] gi| 0.977 0.076 0.620 3e-27
242078279 1136 hypothetical protein SORBIDRAFT_07g00418 0.977 0.076 0.620 3e-27
115474917 1133 Os08g0162100 [Oryza sativa Japonica Grou 0.977 0.076 0.620 3e-27
357144889 1135 PREDICTED: topless-related protein 1-lik 0.977 0.076 0.609 7e-27
449468952 1139 PREDICTED: protein TOPLESS-like [Cucumis 0.977 0.076 0.655 8e-27
255553317 1115 WD-repeat protein, putative [Ricinus com 0.977 0.078 0.643 8e-27
8927654 1153 Strong similarity to an unknown protein 0.977 0.075 0.655 1e-26
297849992 1132 wus-interacting protein 1 [Arabidopsis l 0.977 0.076 0.655 1e-26
18394279 1131 protein TOPLESS [Arabidopsis thaliana] g 0.977 0.076 0.655 1e-26
>gi|37806272|dbj|BAC99788.1| WD-40 repeat protein-like [Oryza sativa Japonica Group] gi|125602281|gb|EAZ41606.1| hypothetical protein OsJ_26138 [Oryza sativa Japonica Group] Back     alignment and taxonomy information
 Score =  125 bits (314), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 54/87 (62%), Positives = 73/87 (83%)

Query: 1   MKHFEDMVLAGKLDEAEKYLSGFTQVHENMLSTKTYFELRRQKFLEALDKHERVKALDIL 60
           MKHFED+V  G+ DE EKYLSGFT+V +N  S K +FE+R+QK+LEALD+H+R KA++IL
Sbjct: 38  MKHFEDLVQGGEWDEVEKYLSGFTKVEDNRYSMKIFFEIRKQKYLEALDRHDRAKAVEIL 97

Query: 61  MKDIKAFSTYNEEVFKEASLLLPLENF 87
           +KD+K F+++NEE+FKE + LL LENF
Sbjct: 98  VKDLKVFASFNEELFKEITQLLTLENF 124

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|304555573|ref|NP_001167872.2| ramosa 1 enhancer locus 2 [Zea mays] gi|303387473|gb|ADM15670.1| ramosa 1 enhancer locus 2 [Zea mays] gi|303387475|gb|ADM15671.1| ramosa 1 enhancer locus 2 [Zea mays] gi|413917313|gb|AFW57245.1| ramosa1 enhancer locus2 [Zea mays] Back     alignment and taxonomy information
>gi|242078279|ref|XP_002443908.1| hypothetical protein SORBIDRAFT_07g004180 [Sorghum bicolor] gi|241940258|gb|EES13403.1| hypothetical protein SORBIDRAFT_07g004180 [Sorghum bicolor] Back     alignment and taxonomy information
>gi|115474917|ref|NP_001061055.1| Os08g0162100 [Oryza sativa Japonica Group] gi|113623024|dbj|BAF22969.1| Os08g0162100 [Oryza sativa Japonica Group] gi|125560238|gb|EAZ05686.1| hypothetical protein OsI_27917 [Oryza sativa Indica Group] gi|371501278|dbj|BAL44266.1| ASP1 protein [Oryza sativa Japonica Group] Back     alignment and taxonomy information
>gi|357144889|ref|XP_003573449.1| PREDICTED: topless-related protein 1-like [Brachypodium distachyon] Back     alignment and taxonomy information
>gi|449468952|ref|XP_004152185.1| PREDICTED: protein TOPLESS-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|255553317|ref|XP_002517701.1| WD-repeat protein, putative [Ricinus communis] gi|223543333|gb|EEF44865.1| WD-repeat protein, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|8927654|gb|AAF82145.1|AC034256_9 Strong similarity to an unknown protein T21F11.18 gi|6730738 from Arabidopsis thaliana BAC T21F11 gb|AC018849 and contains multiple WD PF|00400 domains. ESTs gb|Z34157, gb|AA006273, gb|AA605431, gb|W43588, gb|W43605, gb|Z34559, gb|R90037, gb|AI994125 come from this gene [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|297849992|ref|XP_002892877.1| wus-interacting protein 1 [Arabidopsis lyrata subsp. lyrata] gi|297338719|gb|EFH69136.1| wus-interacting protein 1 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|18394279|ref|NP_563981.1| protein TOPLESS [Arabidopsis thaliana] gi|30684518|ref|NP_849672.1| protein TOPLESS [Arabidopsis thaliana] gi|79318004|ref|NP_001031050.1| protein TOPLESS [Arabidopsis thaliana] gi|79318012|ref|NP_001031051.1| protein TOPLESS [Arabidopsis thaliana] gi|75332047|sp|Q94AI7.1|TPL_ARATH RecName: Full=Protein TOPLESS; AltName: Full=WUS-interacting protein 1 gi|15028127|gb|AAK76687.1| unknown protein [Arabidopsis thaliana] gi|23296857|gb|AAN13188.1| unknown protein [Arabidopsis thaliana] gi|332191235|gb|AEE29356.1| protein TOPLESS [Arabidopsis thaliana] gi|332191236|gb|AEE29357.1| protein TOPLESS [Arabidopsis thaliana] gi|332191237|gb|AEE29358.1| protein TOPLESS [Arabidopsis thaliana] gi|332191238|gb|AEE29359.1| protein TOPLESS [Arabidopsis thaliana] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query89
TAIR|locus:2036204 1131 TPL "TOPLESS" [Arabidopsis tha 0.977 0.076 0.655 5.4e-25
TAIR|locus:2198888 1120 TPR1 "TOPLESS-related 1" [Arab 0.977 0.077 0.643 1.1e-24
TAIR|locus:2086770 1131 TPR2 "TOPLESS-related 2" [Arab 0.977 0.076 0.586 3.5e-23
TAIR|locus:2040100 740 AT2G25420 "AT2G25420" [Arabido 0.842 0.101 0.306 9.9e-05
TAIR|locus:2036204 TPL "TOPLESS" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 297 (109.6 bits), Expect = 5.4e-25, P = 5.4e-25
 Identities = 57/87 (65%), Positives = 71/87 (81%)

Query:     1 MKHFEDMVLAGKLDEAEKYLSGFTQVHENMLSTKTYFELRRQKFLEALDKHERVKALDIL 60
             MK+FED V  G  DE EKYLSGFT+V +N  S K +FE+R+QK+LEALDKH+R KA+DIL
Sbjct:    38 MKYFEDEVHNGNWDEVEKYLSGFTKVDDNRYSMKIFFEIRKQKYLEALDKHDRPKAVDIL 97

Query:    61 MKDIKAFSTYNEEVFKEASLLLPLENF 87
             +KD+K FST+NEE+FKE + LL LENF
Sbjct:    98 VKDLKVFSTFNEELFKEITQLLTLENF 124
GO:0005634 "nucleus" evidence=ISM;IDA
GO:0005515 "protein binding" evidence=IPI
GO:0010072 "primary shoot apical meristem specification" evidence=IGI;IMP
GO:0009733 "response to auxin stimulus" evidence=IPI
GO:0010051 "xylem and phloem pattern formation" evidence=IGI
GO:0042803 "protein homodimerization activity" evidence=IPI
GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=IDA
GO:0005829 "cytosol" evidence=IDA
GO:0009867 "jasmonic acid mediated signaling pathway" evidence=IMP
TAIR|locus:2198888 TPR1 "TOPLESS-related 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2086770 TPR2 "TOPLESS-related 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2040100 AT2G25420 "AT2G25420" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query89
smart0066858 smart00668, CTLH, C-terminal to LisH motif 2e-05
>gnl|CDD|128914 smart00668, CTLH, C-terminal to LisH motif Back     alignment and domain information 
 Score = 38.3 bits (90), Expect = 2e-05
 Identities = 19/53 (35%), Positives = 28/53 (52%), Gaps = 1/53 (1%)

Query: 1  MKHFEDMVLAGKLDEAEKYLSGFTQVHENMLSTKTYFELRRQKFLEALDKHER 53
           K   +++L G  DEA ++LS          S K  FELR+QKFLE + + + 
Sbjct: 5  RKRIRELILKGDWDEALEWLSSLKPPLLERNS-KLEFELRKQKFLELVRQGKL 56

Alpha-helical motif of unknown function. Length = 58

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 89
KOG0293 519 consensus WD40 repeat-containing protein [Function 99.32
smart0066858 CTLH C-terminal to LisH motif. Alpha-helical motif 99.21
KOG2659228 consensus LisH motif-containing protein [Cytoskele 99.18
PF10607145 CLTH: CTLH/CRA C-terminal to LisH motif domain; In 99.16
KOG0396 389 consensus Uncharacterized conserved protein [Funct 98.17
KOG0275 508 consensus Conserved WD40 repeat-containing protein 96.56
PF1455968 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN 96.06
KOG2817 394 consensus Predicted E3 ubiquitin ligase [Posttrans 94.82
KOG3060 289 consensus Uncharacterized conserved protein [Funct 92.1
PF1343265 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL 90.99
smart0075799 CRA CT11-RanBPM. protein-protein interaction domai 89.9
PF13429280 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 88.4
PF1289584 Apc3: Anaphase-promoting complex, cyclosome, subun 86.95
PF1337173 TPR_9: Tetratricopeptide repeat 84.9
KOG0624 504 consensus dsRNA-activated protein kinase inhibitor 83.62
>KOG0293 consensus WD40 repeat-containing protein [Function unknown] Back     alignment and domain information 
Probab=99.32  E-value=2.2e-12  Score=102.56  Aligned_cols=80  Identities=29%  Similarity=0.339  Sum_probs=70.4

Q ss_pred             hhHHHHHhcCCHHHHHHHhcccccccccccccceehhhhhhHHHHHHhcCCHHHHHHHHHhhcccccCCCHHHHHHH-Hh
Q 034603            2 KHFEDMVLAGKLDEAEKYLSGFTQVHENMLSTKTYFELRRQKFLEALDKHERVKALDILMKDIKAFSTYNEEVFKEA-SL   80 (89)
Q Consensus         2 ~~fr~~Vl~G~Wd~a~~~L~~l~~~~~~~~~~~~~FlI~kQKfLElL~~~~~~~AL~~Lr~eL~pl~~~~~~~~~~l-~~   80 (89)
                      +.|.++|++|+|+.++..+..+...++..++ ++.|++.||+|||++..|++..|+.+||++..|+. .|.+.|++| |.
T Consensus        54 klf~q~vlqg~w~q~v~~~~~i~~~de~~~~-ea~fLv~kQ~fLEf~k~~~is~al~~l~~~~~~lr-~~~kk~~el~~s  131 (519)
T KOG0293|consen   54 KLFDQQVLQGQWDQQVMSLVRISFEDERNRK-EAMFLVNKQIFLEFLKTGSISHALPVLRNPVLYLR-KNKKKFHELASS  131 (519)
T ss_pred             HHHHHHHHcccHHHHHHHHhhccCcchhhhH-HHHHHHHHHHHHHHHhhccHhhhhHhhhcchhhhh-hhHHHHHHHHHH
Confidence            5799999999999999999999877788888 69999999999999999999999999999999998 456666666 44


Q ss_pred             hhc
Q 034603           81 LLP   83 (89)
Q Consensus        81 llt   83 (89)
                      ++.
T Consensus       132 ll~  134 (519)
T KOG0293|consen  132 LLV  134 (519)
T ss_pred             Hhc
Confidence            443

>smart00668 CTLH C-terminal to LisH motif Back     alignment and domain information
>KOG2659 consensus LisH motif-containing protein [Cytoskeleton] Back     alignment and domain information
>PF10607 CLTH: CTLH/CRA C-terminal to LisH motif domain; InterPro: IPR019589 This entry represents the CRA (or CT11-RanBPM) domain, which is a protein-protein interaction domain present in crown eukaryotes (plants, animals, fungi) and which is found in Ran-binding proteins such as Ran-binding protein 9 (RanBP9 or RanBPM) and RanBP10 Back     alignment and domain information
>KOG0396 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only] Back     alignment and domain information
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A Back     alignment and domain information
>KOG2817 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG3060 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B Back     alignment and domain information
>smart00757 CRA CT11-RanBPM Back     alignment and domain information
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B Back     alignment and domain information
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A Back     alignment and domain information
>PF13371 TPR_9: Tetratricopeptide repeat Back     alignment and domain information
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query89
2dba_A148 Smooth muscle cell associated protein-1, isoform 2 90.86
4gco_A126 Protein STI-1; structural genomics, PSI-biology, m 90.57
4ga2_A150 E3 SUMO-protein ligase ranbp2; TPR motif, nuclear 88.94
1hxi_A121 PEX5, peroxisome targeting signal 1 receptor PEX5; 88.59
1elw_A118 TPR1-domain of HOP; HOP, TPR-domain, peptide-compl 88.35
2xev_A129 YBGF; tetratricopeptide, alpha-helical, metal bind 88.34
2xcb_A142 PCRH, regulatory protein PCRH; protein transport, 87.74
3urz_A 208 Uncharacterized protein; tetratricopeptide repeats 87.48
3upv_A126 Heat shock protein STI1; TPR-fold, adaptor protein 85.68
1elw_A118 TPR1-domain of HOP; HOP, TPR-domain, peptide-compl 85.2
2vgx_A148 Chaperone SYCD; alternative dimer assembly, tetrat 84.77
4gco_A126 Protein STI-1; structural genomics, PSI-biology, m 84.63
1na3_A91 Designed protein CTPR2; de novo protein; HET: IPT; 84.4
3gyz_A151 Chaperone protein IPGC; asymmetric homodimer, tetr 84.23
2lni_A133 Stress-induced-phosphoprotein 1; structural genomi 83.8
3u4t_A 272 TPR repeat-containing protein; structural genomics 83.42
3sz7_A164 HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G 83.01
2pl2_A 217 Hypothetical conserved protein TTC0263; TPR, prote 82.86
1na0_A125 Designed protein CTPR3; de novo protein; HET: IPT; 82.84
2vyi_A131 SGTA protein; chaperone, TPR repeat, phosphoprotei 82.82
2r5s_A176 Uncharacterized protein VP0806; APC090868.1, vibri 82.8
3ieg_A359 DNAJ homolog subfamily C member 3; TPR motif, chap 82.43
2vyi_A131 SGTA protein; chaperone, TPR repeat, phosphoprotei 82.26
1na0_A125 Designed protein CTPR3; de novo protein; HET: IPT; 81.82
2xev_A129 YBGF; tetratricopeptide, alpha-helical, metal bind 81.21
3as5_A186 MAMA; tetratricopeptide repeats (TPR) containing p 81.21
3qky_A 261 Outer membrane assembly lipoprotein YFIO; membrane 81.21
4ga2_A150 E3 SUMO-protein ligase ranbp2; TPR motif, nuclear 80.31
2dba_A148 Smooth muscle cell associated protein-1, isoform 2 80.09
3q49_B137 STIP1 homology and U box-containing protein 1; E3 80.03
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
Probab=90.86  E-value=1  Score=26.51  Aligned_cols=69  Identities=14%  Similarity=0.020  Sum_probs=30.8

Q ss_pred             HHhcCCHHHHHHHhcccccccccccccceehhhhhhHHHHHHhcCCHHHHHHHHHhhcccccCCCHHHHHHHH
Q 034603            7 MVLAGKLDEAEKYLSGFTQVHENMLSTKTYFELRRQKFLEALDKHERVKALDILMKDIKAFSTYNEEVFKEAS   79 (89)
Q Consensus         7 ~Vl~G~Wd~a~~~L~~l~~~~~~~~~~~~~FlI~kQKfLElL~~~~~~~AL~~Lr~eL~pl~~~~~~~~~~l~   79 (89)
                      ....|+|++|+.++...-..+.++.   ....++-..=.=+...|+..+|+..+++-+.- .+.++..+..++
T Consensus        38 ~~~~~~~~~A~~~~~~a~~~~~~~~---~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~a  106 (148)
T 2dba_A           38 LFKCGDYGGALAAYTQALGLDATPQ---DQAVLHRNRAACHLKLEDYDKAETEASKAIEK-DGGDVKALYRRS  106 (148)
T ss_dssp             HHTTTCHHHHHHHHHHHHTSCCCHH---HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TSCCHHHHHHHH
T ss_pred             HHHhCCHHHHHHHHHHHHHHcccch---HHHHHHHHHHHHHHHHccHHHHHHHHHHHHhh-CccCHHHHHHHH
Confidence            4456777777777766533322210   00111111111123456666666666644332 333444444443
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} Back     alignment and structure
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* Back     alignment and structure
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 Back     alignment and structure
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 Back     alignment and structure
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} Back     alignment and structure
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A Back     alignment and structure
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Back     alignment and structure
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} Back     alignment and structure
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 Back     alignment and structure
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* Back     alignment and structure
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} Back     alignment and structure
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A Back     alignment and structure
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A Back     alignment and structure
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} Back     alignment and structure
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Back     alignment and structure
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} Back     alignment and structure
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} Back     alignment and structure
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A Back     alignment and structure
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 Back     alignment and structure
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} Back     alignment and structure
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Back     alignment and structure
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 Back     alignment and structure
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A Back     alignment and structure
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} Back     alignment and structure
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Back     alignment and structure
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} Back     alignment and structure
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* Back     alignment and structure
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query89
d1elwa_117 Hop {Human (Homo sapiens) [TaxId: 9606]} 92.73
d1a17a_159 Protein phosphatase 5 {Human (Homo sapiens) [TaxId 89.15
d1ihga1169 Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} 89.14
d1elwa_117 Hop {Human (Homo sapiens) [TaxId: 9606]} 88.67
d2c2la1 201 STIP1 homology and U box-containing protein 1, STU 88.49
d1p5qa1170 FKBP52 (FKBP4), C-terminal domain {Human (Homo sap 87.98
d1kt1a1168 FKBP51, C-terminal domain {Monkey (Saimiri bolivie 86.11
d1hxia_112 Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 85.54
d1zbpa1 264 Hypothetical protein VPA1032 {Vibrio parahaemolyti 84.27
d1w3ba_388 O-GlcNAc transferase p110 subunit, OGT {Human (Hom 83.65
d2ff4a2179 Probable regulatory protein EmbR, middle domain {M 83.6
d1w3ba_ 388 O-GlcNAc transferase p110 subunit, OGT {Human (Hom 82.38
d2fbna1153 Putative 70 kda peptidylprolyl isomerase PFL2275c 80.84
>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.73  E-value=0.21  Score=29.15  Aligned_cols=68  Identities=13%  Similarity=0.110  Sum_probs=34.3

Q ss_pred             HHHhcCCHHHHHHHhcccccccccccccceehhhhhhHHHHHHhcCCHHHHHHHHHhhcccccCCCHHHHHHHHh
Q 034603            6 DMVLAGKLDEAEKYLSGFTQVHENMLSTKTYFELRRQKFLEALDKHERVKALDILMKDIKAFSTYNEEVFKEASL   80 (89)
Q Consensus         6 ~~Vl~G~Wd~a~~~L~~l~~~~~~~~~~~~~FlI~kQKfLElL~~~~~~~AL~~Lr~eL~pl~~~~~~~~~~l~~   80 (89)
                      .++..|+|++|+......-..+.++.   ..+.-+=.-   ++..|+..+|+....+-+.- .+.++..|..++.
T Consensus        12 ~~~~~g~~~eAi~~~~~al~~~p~~~---~~~~~~a~~---~~~~~~~~~A~~~~~~al~~-~p~~~~~~~~~g~   79 (117)
T d1elwa_          12 KALSVGNIDDALQCYSEAIKLDPHNH---VLYSNRSAA---YAKKGDYQKAYEDGCKTVDL-KPDWGKGYSRKAA   79 (117)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHCTTCH---HHHHHHHHH---HHHHTCHHHHHHHHHHHHHH-CTTCHHHHHHHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHhcCCcch---hhhhccccc---ccccccccccchhhhhHHHh-ccchhhHHHHHHH
Confidence            46778888888888877643433321   111111122   22345566666655544432 3344544544443
>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} Back     information, alignment and structure
>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} Back     information, alignment and structure
>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} Back     information, alignment and structure
>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} Back     information, alignment and structure