Citrus Sinensis ID: 034611

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------9
Protein Sequence
MDGHDSEDPKQSTADMTVFVQNLLQQMQSRFQTMSDSIVTKIDEMGNRINELEQSINDLRAEMGVEGSPSPLTPSKTNSGEGKPEEGSA
Secondary Structure (PSIPRED)
ccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccc
Coil and Loop (DISEMBL)
mdghdsedpkqstADMTVFVQNLLQQMQSRFQTMSDSIVTKIDEMGNRINELEQSINDLRAemgvegspspltpsktnsgegkpeegsa
Flexible Loop (DISEMBL)
mdghdsedpkqstaDMTVFVQNLLQQMQSRFQTMSDSIVTKIDEMGNRINELEQSINDLRAEMGVegspspltpsktnsgegkpeegsa
Low Complexity Region (SEG)
MDGHDSEDPKQSTADMTVFVQNLLQQMQSRFQTMSDSIVTKIDEMGNRINELEQSINDLRAEMGVEGSPSPLTPSKTNSGEGKPEEGSA
Disordered region (IsUnstruct)
*****************VFVQNLL*****************************************************************
Disordered Region (DISOPRED)
***************MTVFVQNLLQQMQSRFQTMSDSIVTKIDEMGNRINELEQSIND*******************************
Disordered Region (DISEMBL)
************TADMTVFVQNLLQQMQSRFQTMSDSIVTKIDEMGNRINELEQSINDLRAEMGV************************
Disordered Region (DISPRO)
***********STADMTVFVQNLLQQMQSRFQTMSDSIVTKIDEMGNRINELEQSINDLRAEM**************************
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MDGHDSEDPKQSTADMTVFVQNLLQQMQSRFQTMSDSIVTKxxxxxxxxxxxxxxxxxxxxxMGVEGSPSPLTPSKTNSGEGKPEEGSA
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	89	2.2.26 [Sep-21-2011]
Q3ZC22	76	Heat shock factor-binding	yes	no	0.651	0.763	0.559	3e-11
Q5RDI2	76	Heat shock factor-binding	yes	no	0.651	0.763	0.559	3e-11
O75506	76	Heat shock factor-binding	yes	no	0.651	0.763	0.559	3e-11
Q8K3X8	76	Heat shock factor-binding	yes	no	0.651	0.763	0.525	2e-10
Q9CQZ1	76	Heat shock factor-binding	yes	no	0.651	0.763	0.525	2e-10
D4A9E1	72	Heat shock factor-binding	no	no	0.539	0.666	0.395	1e-05
C9JCN9	74	Heat shock factor-binding	no	no	0.539	0.648	0.375	4e-05

>sp|Q3ZC22|HSBP1_BOVIN Heat shock factor-binding protein 1 OS=Bos taurus GN=HSBP1 PE=3 SV=1

 Score = 67.4 bits (163), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 33/59 (55%), Positives = 45/59 (76%), Gaps = 1/59 (1%)

Query: 8  DPKQSTADMTVFVQNLLQQMQSRFQTMSDSIVTKIDEMGNRINELEQSINDLRAEMGVE 66
          DPK +  D+T  VQ LLQQMQ +FQTMSD I+ +ID+M +RI++LE++I DL  + GVE
Sbjct: 5  DPK-TVQDLTSVVQTLLQQMQDKFQTMSDQIIGRIDDMSSRIDDLEKNIADLMTQAGVE 62

Negative regulator of the heat shock response. Negatively affects HSF1 DNA-binding activity. May have a role in the suppression of the activation of the stress response during the aging process.
Bos taurus (taxid: 9913)

>sp|Q5RDI2|HSBP1_PONAB Heat shock factor-binding protein 1 OS=Pongo abelii GN=HSBP1 PE=3 SV=1

 Score = 67.4 bits (163), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 33/59 (55%), Positives = 45/59 (76%), Gaps = 1/59 (1%)

Query: 8  DPKQSTADMTVFVQNLLQQMQSRFQTMSDSIVTKIDEMGNRINELEQSINDLRAEMGVE 66
          DPK +  D+T  VQ LLQQMQ +FQTMSD I+ +ID+M +RI++LE++I DL  + GVE
Sbjct: 5  DPK-TVQDLTSVVQTLLQQMQDKFQTMSDQIIGRIDDMSSRIDDLEKNIADLMTQAGVE 62

Negative regulator of the heat shock response. Negatively affects HSF1 DNA-binding activity. May have a role in the suppression of the activation of the stress response during the aging process.

Pongo abelii (taxid: 9601)

>sp|O75506|HSBP1_HUMAN Heat shock factor-binding protein 1 OS=Homo sapiens GN=HSBP1 PE=1 SV=1

 Score = 67.4 bits (163), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 33/59 (55%), Positives = 45/59 (76%), Gaps = 1/59 (1%)

Query: 8  DPKQSTADMTVFVQNLLQQMQSRFQTMSDSIVTKIDEMGNRINELEQSINDLRAEMGVE 66
          DPK +  D+T  VQ LLQQMQ +FQTMSD I+ +ID+M +RI++LE++I DL  + GVE
Sbjct: 5  DPK-TVQDLTSVVQTLLQQMQDKFQTMSDQIIGRIDDMSSRIDDLEKNIADLMTQAGVE 62

Negative regulator of the heat shock response. Negatively affects HSF1 DNA-binding activity. May have a role in the suppression of the activation of the stress response during the aging process.

Homo sapiens (taxid: 9606)

>sp|Q8K3X8|HSBP1_RAT Heat shock factor-binding protein 1 OS=Rattus norvegicus GN=Hsbp1 PE=3 SV=1

 Score = 64.3 bits (155), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 31/59 (52%), Positives = 45/59 (76%), Gaps = 1/59 (1%)

Query: 8  DPKQSTADMTVFVQNLLQQMQSRFQTMSDSIVTKIDEMGNRINELEQSINDLRAEMGVE 66
          DPK +  D+T+ V+ LLQQMQ +FQ MSD I+ +ID+M +RI++LE++I DL  + GVE
Sbjct: 5  DPK-TMQDITLVVETLLQQMQDKFQIMSDQIIGRIDDMSSRIDDLEKNIADLMTQAGVE 62

Negative regulator of the heat shock response. Negatively affects HSF1 DNA-binding activity. May have a role in the suppression of the activation of the stress response during the aging process.

Rattus norvegicus (taxid: 10116)

>sp|Q9CQZ1|HSBP1_MOUSE Heat shock factor-binding protein 1 OS=Mus musculus GN=Hsbp1 PE=2 SV=1

 Score = 63.9 bits (154), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 31/59 (52%), Positives = 45/59 (76%), Gaps = 1/59 (1%)

Query: 8  DPKQSTADMTVFVQNLLQQMQSRFQTMSDSIVTKIDEMGNRINELEQSINDLRAEMGVE 66
          DPK +  D+T+ V+ LLQQMQ +FQ MSD I+ +ID+M +RI++LE++I DL  + GVE
Sbjct: 5  DPK-TMQDITLVVETLLQQMQDKFQIMSDQIIGRIDDMSSRIDDLEKNIADLMTQAGVE 62

Negative regulator of the heat shock response. Negatively affects HSF1 DNA-binding activity. May have a role in the suppression of the activation of the stress response during the aging process.

Mus musculus (taxid: 10090)

>sp|D4A9E1|HSBPL_RAT Heat shock factor-binding protein 1-like protein 1 OS=Rattus norvegicus GN=Hsbp1l1 PE=3 SV=1

 Score = 48.5 bits (114), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 19/48 (39%), Positives = 38/48 (79%)

Query: 21 QNLLQQMQSRFQTMSDSIVTKIDEMGNRINELEQSINDLRAEMGVEGS 68
          +NLLQ+++  FQ ++ ++  +++EMGNRI +L+++++DL A+ G+E S
Sbjct: 19 ENLLQEVEEHFQALTATLNLRMEEMGNRIEDLQRNVDDLMAQAGIENS 66

Rattus norvegicus (taxid: 10116)

>sp|C9JCN9|HSBPL_HUMAN Heat shock factor-binding protein 1-like protein 1 OS=Homo sapiens GN=HSBP1L1 PE=3 SV=2

 Score = 47.0 bits (110), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 18/48 (37%), Positives = 35/48 (72%)

Query: 21 QNLLQQMQSRFQTMSDSIVTKIDEMGNRINELEQSINDLRAEMGVEGS 68
          +NL Q++Q  FQ ++ ++  +++EMGNRI +L++++ DL  + G+E S
Sbjct: 19 ENLFQELQEHFQALTATLNLRMEEMGNRIEDLQKNVKDLMVQAGIENS 66

Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	89
356503898	92	PREDICTED: heat shock factor-binding pro	0.988	0.956	0.795	2e-33
356535321	88	PREDICTED: heat shock factor-binding pro	0.988	1.0	0.820	1e-32
388522287	87	unknown [Lotus japonicus]	0.977	1.0	0.808	4e-32
255626777	88	unknown [Glycine max]	0.988	1.0	0.808	6e-32
255640785	88	unknown [Glycine max]	0.988	1.0	0.797	1e-31
449436519	89	PREDICTED: heat shock factor-binding pro	1.0	1.0	0.853	2e-31
118483904	88	unknown [Populus trichocarpa] gi|1184899	0.988	1.0	0.797	3e-31
356502856	123	PREDICTED: uncharacterized protein LOC10	0.977	0.707	0.795	4e-31
224107333	88	predicted protein [Populus trichocarpa]	0.988	1.0	0.797	6e-31
225437306	124	PREDICTED: uncharacterized protein LOC10	0.955	0.685	0.802	1e-30

>gi|356503898|ref|XP_003520737.1| PREDICTED: heat shock factor-binding protein 1-like [Glycine max]

 Score =  145 bits (367), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 70/88 (79%), Positives = 77/88 (87%)

Query: 2  DGHDSEDPKQSTADMTVFVQNLLQQMQSRFQTMSDSIVTKIDEMGNRINELEQSINDLRA 61
          DGHDSEDPKQSTADMT FVQNLLQQMQ RFQTMSDSI++KIDEMG+RINELEQSINDLR+
Sbjct: 5  DGHDSEDPKQSTADMTAFVQNLLQQMQLRFQTMSDSIISKIDEMGDRINELEQSINDLRS 64

Query: 62 EMGVEGSPSPLTPSKTNSGEGKPEEGSA 89
          EMGVE +PSP+ P+K    E   EEGSA
Sbjct: 65 EMGVESTPSPVAPAKPKEEESNKEEGSA 92

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356535321|ref|XP_003536195.1| PREDICTED: heat shock factor-binding protein 1 [Glycine max]

 Score =  143 bits (361), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 73/89 (82%), Positives = 79/89 (88%), Gaps = 1/89 (1%)

Query: 1  MDGHDSEDPKQSTADMTVFVQNLLQQMQSRFQTMSDSIVTKIDEMGNRINELEQSINDLR 60
          MDGHDS+DPKQS ADMT FVQNLLQQMQ+RFQTMSDSIVTKID+MG+RINELEQSINDLR
Sbjct: 1  MDGHDSQDPKQSPADMTAFVQNLLQQMQNRFQTMSDSIVTKIDDMGSRINELEQSINDLR 60

Query: 61 AEMGVEGSPSPLTPSKTNSGEGKPEEGSA 89
          AEMGVE SPSP TP+K  + E   EEGSA
Sbjct: 61 AEMGVESSPSPATPAKP-TEEITKEEGSA 88

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388522287|gb|AFK49205.1| unknown [Lotus japonicus]

 Score =  141 bits (356), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 72/89 (80%), Positives = 77/89 (86%), Gaps = 2/89 (2%)

Query: 1  MDGHDSEDPKQSTADMTVFVQNLLQQMQSRFQTMSDSIVTKIDEMGNRINELEQSINDLR 60
          MDG DS+DPKQS ADMT FVQNLLQQMQSRFQTMSDSIVTKID+MG+RINELEQSINDLR
Sbjct: 1  MDGQDSQDPKQSPADMTAFVQNLLQQMQSRFQTMSDSIVTKIDDMGSRINELEQSINDLR 60

Query: 61 AEMGVEGSPSPLTPSKTNSGEGKPEEGSA 89
          AEMGVE SPSP+ P+K    E   EEGSA
Sbjct: 61 AEMGVESSPSPVAPAKPK--EEDKEEGSA 87

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255626777|gb|ACU13733.1| unknown [Glycine max]

 Score =  141 bits (355), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 72/89 (80%), Positives = 78/89 (87%), Gaps = 1/89 (1%)

Query: 1  MDGHDSEDPKQSTADMTVFVQNLLQQMQSRFQTMSDSIVTKIDEMGNRINELEQSINDLR 60
          MDGHDS+DPKQS AD T FVQNLLQQMQ+RFQTMSDSIVTKID+MG+RINELEQSINDLR
Sbjct: 1  MDGHDSQDPKQSPADTTAFVQNLLQQMQNRFQTMSDSIVTKIDDMGSRINELEQSINDLR 60

Query: 61 AEMGVEGSPSPLTPSKTNSGEGKPEEGSA 89
          AEMGVE SPSP TP+K  + E   EEGSA
Sbjct: 61 AEMGVESSPSPATPAKP-TEEITKEEGSA 88

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255640785|gb|ACU20676.1| unknown [Glycine max]

 Score =  140 bits (352), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 71/89 (79%), Positives = 77/89 (86%), Gaps = 1/89 (1%)

Query: 1  MDGHDSEDPKQSTADMTVFVQNLLQQMQSRFQTMSDSIVTKIDEMGNRINELEQSINDLR 60
          MDGHD +DPKQS ADMT FVQNLLQQMQ+RFQTMSDSIVTKID+MG+RINELEQSINDLR
Sbjct: 1  MDGHDPQDPKQSPADMTAFVQNLLQQMQNRFQTMSDSIVTKIDDMGSRINELEQSINDLR 60

Query: 61 AEMGVEGSPSPLTPSKTNSGEGKPEEGSA 89
          AEMGVE SPSP  P+K  + E   EEGSA
Sbjct: 61 AEMGVESSPSPAAPAKL-TEEITKEEGSA 88

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449436519|ref|XP_004136040.1| PREDICTED: heat shock factor-binding protein 1-like isoform 2 [Cucumis sativus] gi|449498472|ref|XP_004160546.1| PREDICTED: heat shock factor-binding protein 1-like isoform 2 [Cucumis sativus]

 Score =  139 bits (351), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 76/89 (85%), Positives = 82/89 (92%)

Query: 1  MDGHDSEDPKQSTADMTVFVQNLLQQMQSRFQTMSDSIVTKIDEMGNRINELEQSINDLR 60
          MDGHDSED KQSTADMT+FVQNLLQQMQSRFQTMSDSI+TKIDEMG+RINELEQSINDL+
Sbjct: 1  MDGHDSEDAKQSTADMTIFVQNLLQQMQSRFQTMSDSIITKIDEMGSRINELEQSINDLK 60

Query: 61 AEMGVEGSPSPLTPSKTNSGEGKPEEGSA 89
          AEMGVEGSPSPL PSK  + E K +EGSA
Sbjct: 61 AEMGVEGSPSPLPPSKPVADEVKKDEGSA 89

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|118483904|gb|ABK93842.1| unknown [Populus trichocarpa] gi|118489953|gb|ABK96773.1| unknown [Populus trichocarpa x Populus deltoides]

 Score =  139 bits (349), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 71/89 (79%), Positives = 75/89 (84%), Gaps = 1/89 (1%)

Query: 1  MDGHDSEDPKQSTADMTVFVQNLLQQMQSRFQTMSDSIVTKIDEMGNRINELEQSINDLR 60
          MDGHD++D K+STADMT FVQNLLQQMQSRFQTMSDSIVTKIDEMGNRI+ELEQSINDLR
Sbjct: 1  MDGHDADDAKKSTADMTAFVQNLLQQMQSRFQTMSDSIVTKIDEMGNRIDELEQSINDLR 60

Query: 61 AEMGVEGSPSPLTPSKTNSGEGKPEEGSA 89
           EMGVEGSPSP  P K    E KP   SA
Sbjct: 61 TEMGVEGSPSPSVPPKVKE-EPKPGNDSA 88

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356502856|ref|XP_003520231.1| PREDICTED: uncharacterized protein LOC100800401 [Glycine max]

 Score =  138 bits (348), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 70/88 (79%), Positives = 75/88 (85%), Gaps = 1/88 (1%)

Query: 2   DGHDSEDPKQSTADMTVFVQNLLQQMQSRFQTMSDSIVTKIDEMGNRINELEQSINDLRA 61
           DGHD +DPKQS ADMT FVQNLLQQMQ+RFQTMSDSIVTKID+MG+RINELEQSINDLRA
Sbjct: 37  DGHDPQDPKQSPADMTAFVQNLLQQMQNRFQTMSDSIVTKIDDMGSRINELEQSINDLRA 96

Query: 62  EMGVEGSPSPLTPSKTNSGEGKPEEGSA 89
           EMGVE SPSP  P+K    E   EEGSA
Sbjct: 97  EMGVESSPSPAAPAKLTE-EITKEEGSA 123

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224107333|ref|XP_002314449.1| predicted protein [Populus trichocarpa] gi|222863489|gb|EEF00620.1| predicted protein [Populus trichocarpa]

 Score =  137 bits (346), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 71/89 (79%), Positives = 75/89 (84%), Gaps = 1/89 (1%)

Query: 1  MDGHDSEDPKQSTADMTVFVQNLLQQMQSRFQTMSDSIVTKIDEMGNRINELEQSINDLR 60
          MDGHD++D K+STADMT FVQNLLQQMQSRFQTMSDSIVTKIDEMGNRI+ELEQSINDLR
Sbjct: 1  MDGHDADDAKKSTADMTAFVQNLLQQMQSRFQTMSDSIVTKIDEMGNRIDELEQSINDLR 60

Query: 61 AEMGVEGSPSPLTPSKTNSGEGKPEEGSA 89
           EMGVEGSPSP  P K    E KP   SA
Sbjct: 61 TEMGVEGSPSPSVPPKFKE-EPKPGNDSA 88

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225437306|ref|XP_002267144.1| PREDICTED: uncharacterized protein LOC100258937 [Vitis vinifera]

 Score =  136 bits (343), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 69/86 (80%), Positives = 74/86 (86%), Gaps = 1/86 (1%)

Query: 2   DGHDSEDPKQSTADMTVFVQNLLQQMQSRFQTMSDSIVTKIDEMGNRINELEQSINDLRA 61
           DG + EDPK STADMTVFVQNLLQQMQSRFQ MSDSIVTKIDEMGN INELEQSIN+LRA
Sbjct: 40  DGQNLEDPK-STADMTVFVQNLLQQMQSRFQAMSDSIVTKIDEMGNSINELEQSINELRA 98

Query: 62  EMGVEGSPSPLTPSKTNSGEGKPEEG 87
           EMG EGSPSPL P K+   E KP++G
Sbjct: 99  EMGAEGSPSPLAPPKSKPDEVKPDDG 124

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	89
TAIR|locus:1005716315	86	HSBP "heat shock factor bindin	0.842	0.872	0.853	1e-29
ZFIN|ZDB-GENE-050320-136	77	hsbp1a "heat shock factor bind	0.797	0.922	0.527	2.3e-14
ZFIN|ZDB-GENE-040426-1721	76	hsbp1b "heat shock factor bind	0.651	0.763	0.593	5.6e-13
UNIPROTKB|Q3ZC22	76	HSBP1 "Heat shock factor-bindi	0.651	0.763	0.559	3.1e-12
UNIPROTKB|O75506	76	HSBP1 "Heat shock factor-bindi	0.651	0.763	0.559	3.1e-12
MGI|MGI:1915446	76	Hsbp1 "heat shock factor bindi	0.797	0.934	0.465	1.7e-11
RGD|628632	76	Hsbp1 "heat shock factor bindi	0.651	0.763	0.525	2.2e-11
DICTYBASE|DDB_G0274013	102	DDB_G0274013 "heat shock facto	0.550	0.480	0.588	1.2e-10
DICTYBASE|DDB_G0272620	102	DDB_G0272620 "heat shock facto	0.550	0.480	0.588	1.2e-10
UNIPROTKB|Q9U3B7	80	hsb-1 "Protein HSB-1" [Caenorh	0.629	0.7	0.517	5.2e-10

TAIR|locus:1005716315 HSBP "heat shock factor binding protein" [Arabidopsis thaliana (taxid:3702)]

 Score = 329 (120.9 bits), Expect = 1.0e-29, P = 1.0e-29
 Identities = 64/75 (85%), Positives = 69/75 (92%)

Query:     1 MDGHDSEDPKQSTADMTVFVQNLLQQMQSRFQTMSDSIVTKIDEMGNRINELEQSINDLR 60
             MDGHDSED KQSTADMT FVQNLLQQMQ+RFQTMSDSI+TKID+MG RINELEQSINDLR
Sbjct:     1 MDGHDSEDTKQSTADMTAFVQNLLQQMQTRFQTMSDSIITKIDDMGGRINELEQSINDLR 60

Query:    61 AEMGVEGSPSPLTPS 75
             AEMGVEG+P P + S
Sbjct:    61 AEMGVEGTPPPASKS 75

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0005829 "cytosol" evidence=IDA

GO:0009408 "response to heat" evidence=IMP

GO:0031072 "heat shock protein binding" evidence=IPI

GO:0048316 "seed development" evidence=IMP

GO:0070370 "cellular heat acclimation" evidence=IMP

GO:0005794 "Golgi apparatus" evidence=IDA

ZFIN|ZDB-GENE-050320-136 hsbp1a "heat shock factor binding protein 1a" [Danio rerio (taxid:7955)]

 Score = 184 (69.8 bits), Expect = 2.3e-14, P = 2.3e-14
 Identities = 38/72 (52%), Positives = 53/72 (73%)

Query:     7 EDPKQSTADMTVFVQNLLQQMQSRFQTMSDSIVTKIDEMGNRINELEQSINDLRAEMGVE 66
             +DPK S+ D+TV VQ LLQQMQ +FQTMSD I+ +IDEM  RI++LE++I+DL  + GVE
Sbjct:     4 KDPK-SSQDLTVVVQTLLQQMQDKFQTMSDQIIGRIDEMSTRIDDLEKNISDLMTQAGVE 62

Query:    67 GSPSPLTPSKTN 78
                  +  S+T+
Sbjct:    63 ELEEEIKNSETS 74

GO:0005575 "cellular_component" evidence=ND

ZFIN|ZDB-GENE-040426-1721 hsbp1b "heat shock factor binding protein 1b" [Danio rerio (taxid:7955)]

 Score = 171 (65.3 bits), Expect = 5.6e-13, P = 5.6e-13
 Identities = 35/59 (59%), Positives = 44/59 (74%)

Query:     8 DPKQSTADMTVFVQNLLQQMQSRFQTMSDSIVTKIDEMGNRINELEQSINDLRAEMGVE 66
             DPK S  D+T  VQ LLQQMQ +FQTMSD I+ +IDEM  RI++LE++I DL  + GVE
Sbjct:     5 DPK-SVQDLTAVVQTLLQQMQDKFQTMSDQIIGRIDEMSTRIDDLEKNIADLMTQAGVE 62

GO:0006950 "response to stress" evidence=IEA

UNIPROTKB|Q3ZC22 HSBP1 "Heat shock factor-binding protein 1" [Bos taurus (taxid:9913)]

 Score = 164 (62.8 bits), Expect = 3.1e-12, P = 3.1e-12
 Identities = 33/59 (55%), Positives = 45/59 (76%)

Query:     8 DPKQSTADMTVFVQNLLQQMQSRFQTMSDSIVTKIDEMGNRINELEQSINDLRAEMGVE 66
             DPK +  D+T  VQ LLQQMQ +FQTMSD I+ +ID+M +RI++LE++I DL  + GVE
Sbjct:     5 DPK-TVQDLTSVVQTLLQQMQDKFQTMSDQIIGRIDDMSSRIDDLEKNIADLMTQAGVE 62

GO:0005634 "nucleus" evidence=IEA

UNIPROTKB|O75506 HSBP1 "Heat shock factor-binding protein 1" [Homo sapiens (taxid:9606)]

 Score = 164 (62.8 bits), Expect = 3.1e-12, P = 3.1e-12
 Identities = 33/59 (55%), Positives = 45/59 (76%)

Query:     8 DPKQSTADMTVFVQNLLQQMQSRFQTMSDSIVTKIDEMGNRINELEQSINDLRAEMGVE 66
             DPK +  D+T  VQ LLQQMQ +FQTMSD I+ +ID+M +RI++LE++I DL  + GVE
Sbjct:     5 DPK-TVQDLTSVVQTLLQQMQDKFQTMSDQIIGRIDDMSSRIDDLEKNIADLMTQAGVE 62

GO:0005856 "cytoskeleton" evidence=IEA

GO:0006936 "muscle contraction" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0003714 "transcription corepressor activity" evidence=TAS

GO:0000122 "negative regulation of transcription from RNA polymerase II promoter" evidence=TAS

MGI|MGI:1915446 Hsbp1 "heat shock factor binding protein 1" [Mus musculus (taxid:10090)]

 Score = 157 (60.3 bits), Expect = 1.7e-11, P = 1.7e-11
 Identities = 34/73 (46%), Positives = 49/73 (67%)

Query:     8 DPKQSTADMTVFVQNLLQQMQSRFQTMSDSIVTKIDEMGNRINELEQSINDLRAEMGVEG 67
             DPK +  D+T+ V+ LLQQMQ +FQ MSD I+ +ID+M +RI++LE++I DL  + GVE 
Sbjct:     5 DPK-TMQDITLVVETLLQQMQDKFQIMSDQIIGRIDDMSSRIDDLEKNIADLMTQAGVEE 63

Query:    68 -SPSPLTPSKTNS 79
               P    P+   S
Sbjct:    64 LDPENKIPTAQKS 76

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=IEA

GO:0005856 "cytoskeleton" evidence=ISO

GO:0006936 "muscle contraction" evidence=ISO

RGD|628632 Hsbp1 "heat shock factor binding protein 1" [Rattus norvegicus (taxid:10116)]

 Score = 156 (60.0 bits), Expect = 2.2e-11, P = 2.2e-11
 Identities = 31/59 (52%), Positives = 45/59 (76%)

Query:     8 DPKQSTADMTVFVQNLLQQMQSRFQTMSDSIVTKIDEMGNRINELEQSINDLRAEMGVE 66
             DPK +  D+T+ V+ LLQQMQ +FQ MSD I+ +ID+M +RI++LE++I DL  + GVE
Sbjct:     5 DPK-TMQDITLVVETLLQQMQDKFQIMSDQIIGRIDDMSSRIDDLEKNIADLMTQAGVE 62

GO:0005634 "nucleus" evidence=IEA

GO:0005856 "cytoskeleton" evidence=IDA

GO:0006936 "muscle contraction" evidence=IDA

DICTYBASE|DDB_G0274013 DDB_G0274013 "heat shock factor-binding protein 1" [Dictyostelium discoideum (taxid:44689)]

 Score = 149 (57.5 bits), Expect = 1.2e-10, P = 1.2e-10
 Identities = 30/51 (58%), Positives = 43/51 (84%)

Query:    11 QSTADMTV--FVQNLLQQMQSRFQTMSDSIVTKIDEMGNRINELEQSINDL 59
             Q+  D+ +   VQNLL+QMQSRF+ +S+SI+T+IDEMG RI+EL++SI+DL
Sbjct:    22 QNNGDVLIGNVVQNLLEQMQSRFEKVSESILTRIDEMGQRIDELDKSISDL 72

GO:0044351 "macropinocytosis" evidence=RCA

DICTYBASE|DDB_G0272620 DDB_G0272620 "heat shock factor-binding protein 1" [Dictyostelium discoideum (taxid:44689)]

 Score = 149 (57.5 bits), Expect = 1.2e-10, P = 1.2e-10
 Identities = 30/51 (58%), Positives = 43/51 (84%)

Query:    11 QSTADMTV--FVQNLLQQMQSRFQTMSDSIVTKIDEMGNRINELEQSINDL 59
             Q+  D+ +   VQNLL+QMQSRF+ +S+SI+T+IDEMG RI+EL++SI+DL
Sbjct:    22 QNNGDVLIGNVVQNLLEQMQSRFEKVSESILTRIDEMGQRIDELDKSISDL 72

GO:0044351 "macropinocytosis" evidence=RCA

UNIPROTKB|Q9U3B7 hsb-1 "Protein HSB-1" [Caenorhabditis elegans (taxid:6239)]

 Score = 143 (55.4 bits), Expect = 5.2e-10, P = 5.2e-10
 Identities = 29/56 (51%), Positives = 39/56 (69%)

Query:    15 DMTVFVQNLLQQMQSRFQTMSDSIVTKIDEMGNRINELEQSINDLRAEMGVEGSPS 70
             D+T  +Q +LQQ Q RFQ MSD I+ +ID+M  RI++LE++INDL     VE  PS
Sbjct:    23 DLTSLIQGVLQQTQDRFQHMSDQIIRRIDDMTTRIDDLEKNINDLLQSNQVEHPPS 78

GO:0005515 "protein binding" evidence=IPI

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q8K3X8	HSBP1_RAT	No assigned EC number	0.5254	0.6516	0.7631	yes	no
O75506	HSBP1_HUMAN	No assigned EC number	0.5593	0.6516	0.7631	yes	no
Q3ZC22	HSBP1_BOVIN	No assigned EC number	0.5593	0.6516	0.7631	yes	no
Q9CQZ1	HSBP1_MOUSE	No assigned EC number	0.5254	0.6516	0.7631	yes	no
Q5RDI2	HSBP1_PONAB	No assigned EC number	0.5593	0.6516	0.7631	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	89
pfam06825	54	pfam06825, HSBP1, Heat shock factor binding protei	1e-19

>gnl|CDD|148437 pfam06825, HSBP1, Heat shock factor binding protein 1

 Score = 74.2 bits (183), Expect = 1e-19
 Identities = 36/54 (66%), Positives = 47/54 (87%)

Query: 13 TADMTVFVQNLLQQMQSRFQTMSDSIVTKIDEMGNRINELEQSINDLRAEMGVE 66
          + ++T FVQNLLQQMQ++FQTMSD+I++KIDEM  RI+ELE+SINDL  + GVE
Sbjct: 1  SEELTAFVQNLLQQMQTKFQTMSDNILSKIDEMSKRIDELEKSINDLMQQAGVE 54

Heat shock factor binding protein 1 (HSBP1) appears to be a negative regulator of the heat shock response. Length = 54

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	89
KOG4117	73	consensus Heat shock factor binding protein [Trans	99.98
PF06825	54	HSBP1: Heat shock factor binding protein 1; InterP	99.96
COG3937	108	Uncharacterized conserved protein [Function unknow	95.12
PF10393	47	Matrilin_ccoil: Trimeric coiled-coil oligomerisati	93.44
PF01601	610	Corona_S2: Coronavirus S2 glycoprotein; InterPro:	92.07
PF05597	132	Phasin: Poly(hydroxyalcanoate) granule associated	91.37
PF06705	247	SF-assemblin: SF-assemblin/beta giardin	91.14
TIGR01834	320	PHA_synth_III_E poly(R)-hydroxyalkanoic acid synth	91.12
PF10046	99	BLOC1_2: Biogenesis of lysosome-related organelles	90.34
TIGR01837	118	PHA_granule_1 poly(hydroxyalkanoate) granule-assoc	89.5
PF14261	59	DUF4351: Domain of unknown function (DUF4351)	87.5
PF15070	617	GOLGA2L5: Putative golgin subfamily A member 2-lik	87.44
PF07304	157	SRA1: Steroid receptor RNA activator (SRA1); Inter	87.34
PRK13182	175	racA polar chromosome segregation protein; Reviewe	85.97
PF05377	55	FlaC_arch: Flagella accessory protein C (FlaC); In	85.6
PF10779	71	XhlA: Haemolysin XhlA; InterPro: IPR019715 Haemoly	85.2
PF01519	102	DUF16: Protein of unknown function DUF16; InterPro	84.69
PF04513	140	Baculo_PEP_C: Baculovirus polyhedron envelope prot	84.56
PF10158	131	LOH1CR12: Tumour suppressor protein; InterPro: IPR	83.54

>KOG4117 consensus Heat shock factor binding protein [Transcription; Posttranslational modification, protein turnover, chaperones]

Probab=99.98  E-value=2.3e-32  Score=179.52  Aligned_cols=65  Identities=51%  Similarity=0.756  Sum_probs=62.4

Q ss_pred             CCCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhCCCCCCC
Q 034611            5 DSEDPKQSTADMTVFVQNLLQQMQSRFQTMSDSIVTKIDEMGNRINELEQSINDLRAEMGVEGSPS   70 (89)
Q Consensus         5 ~s~dpkqs~~dLT~~Vq~LLqQmQ~kFqtmS~~I~~riDeMg~RIDdLEksI~dLm~qaG~e~~~~   70 (89)
                      ...||| +++|||.+||+||||.|+|||+||++||+||||||+|||+|||||+|||+|+|||++++
T Consensus         7 a~aDpk-Nmq~LTs~vQ~lLQq~QDkFQtMSDQII~RiDDM~~riDDLEKnIaDLm~qagvE~~~s   71 (73)
T KOG4117|consen    7 AEADPK-NMQDLTSVVQGLLQQTQDKFQTMSDQIIGRIDDMSSRIDDLEKNIADLMTQAGVEELES   71 (73)
T ss_pred             CCCCcc-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHccccCCCC
Confidence            356899 99999999999999999999999999999999999999999999999999999999885

>PF06825 HSBP1: Heat shock factor binding protein 1; InterPro: IPR009643 Heat shock factor binding protein 1 (HSBP1) appears to be a negative regulator of the heat shock response []

Probab=99.96  E-value=5.2e-30  Score=160.27  Aligned_cols=54  Identities=61%  Similarity=0.923  Sum_probs=42.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhCCC
Q 034611           13 TADMTVFVQNLLQQMQSRFQTMSDSIVTKIDEMGNRINELEQSINDLRAEMGVE   66 (89)
Q Consensus        13 ~~dLT~~Vq~LLqQmQ~kFqtmS~~I~~riDeMg~RIDdLEksI~dLm~qaG~e   66 (89)
                      .+|||+||++||+|||+||++||++|++||||||+|||+||+||++||+|||+|
T Consensus         1 s~elt~~v~~lL~qmq~kFq~mS~~I~~riDeM~~RIDdLE~si~dl~~qag~~   54 (54)
T PF06825_consen    1 SQELTAFVQNLLQQMQDKFQTMSDQILGRIDEMSSRIDDLEKSIADLMTQAGVE   54 (54)
T ss_dssp             -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHH----------
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCC
Confidence            379999999999999999999999999999999999999999999999999986

; PDB: 3CI9_A.

>COG3937 Uncharacterized conserved protein [Function unknown]

Probab=95.12  E-value=0.16  Score=36.02  Aligned_cols=53  Identities=28%  Similarity=0.514  Sum_probs=40.2

Q ss_pred             cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------HHHhhhHHHHHHHHHHHHHh
Q 034611           10 KQSTADMTVFVQNLLQQMQSRFQTMSDSIVTKI---------------DEMGNRINELEQSINDLRAE   62 (89)
Q Consensus        10 kqs~~dLT~~Vq~LLqQmQ~kFqtmS~~I~~ri---------------DeMg~RIDdLEksI~dLm~q   62 (89)
                      +-|.++=..||+.|++|.+..=...-..|-.||               ++.-.|||.||+.|++|=++
T Consensus        38 eln~eEak~~vddl~~q~k~~~~e~e~K~~r~i~~ml~~~~~~r~~~~~~l~~rvd~Lerqv~~Lenk  105 (108)
T COG3937          38 ELNAEEAKRFVDDLLRQAKEAQGELEEKIPRKIEEMLSDLEVARQSEMDELTERVDALERQVADLENK  105 (108)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHhhhHHHhhhHHHHHHHhhccccccchHHHHHHHHHHHHHHHHHHHHH
Confidence            457889999999999999866554444444443               44568999999999999765

>PF10393 Matrilin_ccoil: Trimeric coiled-coil oligomerisation domain of matrilin; InterPro: IPR019466 This entry represents a short domain found the matrilin (cartilage matrix) proteins

Probab=93.44  E-value=0.35  Score=29.59  Aligned_cols=19  Identities=26%  Similarity=0.625  Sum_probs=15.7

Q ss_pred             HHHHHHHHhhhHHHHHHHH
Q 034611           38 IVTKIDEMGNRINELEQSI   56 (89)
Q Consensus        38 I~~riDeMg~RIDdLEksI   56 (89)
                      +..|+|+|+.||..||..+
T Consensus        28 Lt~kL~~vs~RLe~LEn~~   46 (47)
T PF10393_consen   28 LTQKLDAVSKRLEALENRL   46 (47)
T ss_dssp             HHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhcc
Confidence            3456899999999999875

It forms a coiled coil structure and contains a single cysteine residue at its start which is likely to form a di-sulphide bridge with a corresponding cysteine in an upstream EGF domain (IPR006209 from INTERPRO), thereby spanning the VWA domain of the protein (IPR002035 from INTERPRO).This domain is likely to be responsible for protein trimerisation []. ; PDB: 1AQ5_C.

>PF01601 Corona_S2: Coronavirus S2 glycoprotein; InterPro: IPR002552 The type I glycoprotein S of Coronavirus, trimers of which constitute the typical viral spikes, is assembled into virions through noncovalent interactions with the M protein

Probab=92.07  E-value=0.21  Score=43.87  Aligned_cols=35  Identities=26%  Similarity=0.479  Sum_probs=30.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Q 034611           17 TVFVQNLLQQMQSRFQTMSDSIVTKIDEMGNRINELEQS   55 (89)
Q Consensus        17 T~~Vq~LLqQmQ~kFqtmS~~I~~riDeMg~RIDdLEks   55 (89)
                      .+++..|..||+++|+.+|    +-|.|.-+|+|.||+.
T Consensus       286 ~~aL~~L~~qL~nnF~AIS----ssI~dIy~RLd~leAd  320 (610)
T PF01601_consen  286 GQALNQLTSQLSNNFGAIS----SSIQDIYNRLDQLEAD  320 (610)
T ss_dssp             HHHHHHHHHHHHHHCCHHH----HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhhhhhH----HHHHHHHHHHHHHhhc
Confidence            4577889999999999988    5567999999999975

The spike glycoprotein is translated as a large polypeptide that is subsequently cleaved to S1 IPR002551 from INTERPRO and S2 []. Both chimeric S proteins appeared to cause cell fusion when expressed individually, suggesting that they were biologically fully active []. The spike is a type I membrane glycoprotein that possesses a conserved transmembrane anchor and an unusual cysteine-rich (cys) domain that bridges the putative junction of the anchor and the cytoplasmic tail [].; GO: 0006944 cellular membrane fusion, 0046813 virion attachment, binding of host cell surface receptor, 0016021 integral to membrane, 0019031 viral envelope; PDB: 2BEQ_B 2FXP_A 1ZVB_A 1WNC_D 1ZV8_H 1ZV7_B 1WYY_B 1ZVA_A 2BEZ_F 1WDG_A ....

>PF05597 Phasin: Poly(hydroxyalcanoate) granule associated protein (phasin); InterPro: IPR008769 Polyhydroxyalkanoates (PHAs) are storage polyesters synthesised by various bacteria as intracellular carbon and energy reserve material

Probab=91.37  E-value=1.5  Score=31.42  Aligned_cols=47  Identities=13%  Similarity=0.333  Sum_probs=30.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHhhhHHHHHHHHHHHHH
Q 034611           15 DMTVFVQNLLQQMQSRFQTMSDSIVTK--------IDEMGNRINELEQSINDLRA   61 (89)
Q Consensus        15 dLT~~Vq~LLqQmQ~kFqtmS~~I~~r--------iDeMg~RIDdLEksI~dLm~   61 (89)
                      +++.-+..-+..+...|+.=-..++.|        |+.++.|||.|++.|..|..
T Consensus        76 ~~~~~~~~~~dklE~~fd~rV~~aL~rLgvPs~~dv~~L~~rId~L~~~v~~l~~  130 (132)
T PF05597_consen   76 DVKERATGQWDKLEQAFDERVARALNRLGVPSRKDVEALSARIDQLTAQVERLAN  130 (132)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHhc
Confidence            333444444444555555444445555        68999999999999998864

PHAs are accumulated as water-insoluble inclusions within the cells. This family consists of the phasins PhaF and PhaI which act as a transcriptional regulator of PHA biosynthesis genes. PhaF has been proposed to repress expression of the phaC1 gene and the phaIF operon.

>PF06705 SF-assemblin: SF-assemblin/beta giardin

Probab=91.14  E-value=1.5  Score=32.93  Aligned_cols=46  Identities=17%  Similarity=0.468  Sum_probs=33.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh
Q 034611           17 TVFVQNLLQQMQSRFQTMSDSIVTKIDEMGNRINELEQSINDLRAE   62 (89)
Q Consensus        17 T~~Vq~LLqQmQ~kFqtmS~~I~~riDeMg~RIDdLEksI~dLm~q   62 (89)
                      ..-+.++.+.++..|.+..+++-.++|.+..||..|+..|++-..+
T Consensus        69 e~~i~~~~~~v~~~~~~~~~~~~~~l~~L~~ri~~L~~~i~ee~~~  114 (247)
T PF06705_consen   69 EEQINNMQERVENQISEKQEQLQSRLDSLNDRIEALEEEIQEEKEE  114 (247)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444555555566667777888888899999999998888876654

>TIGR01834 PHA_synth_III_E poly(R)-hydroxyalkanoic acid synthase, class III, PhaE subunit

Probab=91.12  E-value=1.3  Score=36.02  Aligned_cols=42  Identities=21%  Similarity=0.503  Sum_probs=35.4

Q ss_pred             HHHHHHHHHHHHHHHHHHH--------HHHHhhhHHHHHHHHHHHHHhhC
Q 034611           23 LLQQMQSRFQTMSDSIVTK--------IDEMGNRINELEQSINDLRAEMG   64 (89)
Q Consensus        23 LLqQmQ~kFqtmS~~I~~r--------iDeMg~RIDdLEksI~dLm~qaG   64 (89)
                      -+-+++-.|+.+.+.++..        ||+++.||.+||+.|..|-.+.+
T Consensus       264 a~m~lr~~~qe~~e~~L~~LnlPTRsElDe~~krL~ELrR~vr~L~k~l~  313 (320)
T TIGR01834       264 ALMRLRIQQQEIVEALLKMLNLPTRSELDEAHQRIQQLRREVKSLKKRLG  313 (320)
T ss_pred             HHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3556778888888888854        89999999999999999998865

This model represents the PhaE subunit of the heterodimeric class (class III) of polymerase for poly(R)-hydroxyalkanoic acids (PHAs), carbon and energy storage polymers of many bacteria. The most common PHA is polyhydroxybutyrate but about 150 different constituent hydroxyalkanoic acids (HAs) have been identified in various species. This model must be designated subfamily to indicate the heterogeneity of PHAs.

>PF10046 BLOC1_2: Biogenesis of lysosome-related organelles complex-1 subunit 2 ; InterPro: IPR019269 This entry represents a family of proteins that play a role in cellular proliferation, as well as in the biogenesis of specialised organelles of the endosomal-lysosomal system []

Probab=90.34  E-value=2.5  Score=28.21  Aligned_cols=45  Identities=20%  Similarity=0.533  Sum_probs=31.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Q 034611           14 ADMTVFVQNLLQQMQSRFQTMSDSIVTKIDEMGNRINELEQSINDL   59 (89)
Q Consensus        14 ~dLT~~Vq~LLqQmQ~kFqtmS~~I~~riDeMg~RIDdLEksI~dL   59 (89)
                      .++++-+..-++++..++..+ ..-+.+||++-.+|..||+.+..|
T Consensus        41 ~~~~~~l~~~~~~l~~k~~~l-~~~l~~Id~Ie~~V~~LE~~v~~L   85 (99)
T PF10046_consen   41 KDIAAGLEKNLEDLNQKYEEL-QPYLQQIDQIEEQVTELEQTVYEL   85 (99)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344555556677777777776 445677888888888888877765

>TIGR01837 PHA_granule_1 poly(hydroxyalkanoate) granule-associated protein

Probab=89.50  E-value=3  Score=28.80  Aligned_cols=19  Identities=26%  Similarity=0.650  Sum_probs=16.3

Q ss_pred             HHHHhhhHHHHHHHHHHHH
Q 034611           42 IDEMGNRINELEQSINDLR   60 (89)
Q Consensus        42 iDeMg~RIDdLEksI~dLm   60 (89)
                      |+.+..|||.||+.|..|-
T Consensus        98 v~~L~~RI~~Le~~l~~l~  116 (118)
T TIGR01837        98 IEALSAKIEQLAVQVEELR  116 (118)
T ss_pred             HHHHHHHHHHHHHHHHHHh
Confidence            5788899999999998874

This model describes a domain found in some proteins associated with polyhydroxyalkanoate (PHA) granules in a subset of species that have PHA inclusion granules. Included are two tandem proteins of Pseudomonas oleovorans, PhaI and PhaF, and their homologs in related species. PhaF proteins have a low-complexity C-terminal region with repeats similar to AAAKP.

>PF14261 DUF4351: Domain of unknown function (DUF4351)

Probab=87.50  E-value=0.6  Score=29.06  Aligned_cols=40  Identities=20%  Similarity=0.372  Sum_probs=33.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Q 034611           19 FVQNLLQQMQSRFQTMSDSIVTKIDEMGNRINELEQSINDLR   60 (89)
Q Consensus        19 ~Vq~LLqQmQ~kFqtmS~~I~~riDeMg~RIDdLEksI~dLm   60 (89)
                      ...-++.+++-||-.++..+..||...+  ++.||.=...|.
T Consensus         8 ~~~lllRlL~rrFG~lp~~~~~~I~~l~--~eqLE~l~e~il   47 (59)
T PF14261_consen    8 EARLLLRLLTRRFGELPPEIQERIQQLS--LEQLEALAEAIL   47 (59)
T ss_pred             HHHHHHHHHHHHcCCCCHHHHHHHHcCC--HHHHHHHHHHHh
Confidence            4567899999999999999999999987  788887555444

>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5

Probab=87.44  E-value=4.8  Score=35.09  Aligned_cols=54  Identities=31%  Similarity=0.513  Sum_probs=40.1

Q ss_pred             HHHHHHH---HHHHHHHHHHHHHHH---HHHHHHhhhHHHHHHHHHHHHHhhCCCCCCCC
Q 034611           18 VFVQNLL---QQMQSRFQTMSDSIV---TKIDEMGNRINELEQSINDLRAEMGVEGSPSP   71 (89)
Q Consensus        18 ~~Vq~LL---qQmQ~kFqtmS~~I~---~riDeMg~RIDdLEksI~dLm~qaG~e~~~~~   71 (89)
                      .|++.|-   ..++.|++.||.+|-   ...+..-+||-+||.+|..|-+++....+|.|
T Consensus        15 ~ya~~lk~e~a~~qqr~~qmseev~~L~eEk~~~~~~V~eLE~sL~eLk~q~~~~~~~~~   74 (617)
T PF15070_consen   15 QYAQQLKEESAQWQQRMQQMSEEVRTLKEEKEHDISRVQELERSLSELKNQMAEPPPPEP   74 (617)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCccc
Confidence            3444443   346889999998876   34578889999999999999998766554433

>PF07304 SRA1: Steroid receptor RNA activator (SRA1); InterPro: IPR009917 This entry consists of several hypothetical mammalian steroid receptor RNA activator proteins

Probab=87.34  E-value=1.3  Score=32.08  Aligned_cols=41  Identities=22%  Similarity=0.443  Sum_probs=28.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH-HHHHhhhHHHHHHHHHH
Q 034611           18 VFVQNLLQQMQSRFQTMSDSIVTK-IDEMGNRINELEQSIND   58 (89)
Q Consensus        18 ~~Vq~LLqQmQ~kFqtmS~~I~~r-iDeMg~RIDdLEksI~d   58 (89)
                      ..+..+|..|+.-+......+..| ++|+.+||+-|+..++.
T Consensus        42 ~~i~~~~~~L~~v~~~~~~~~~kr~~~D~~KRL~iLfd~ln~   83 (157)
T PF07304_consen   42 QPIEEVLRELQRVLEACPPSIKKRVVDDIEKRLNILFDHLNN   83 (157)
T ss_dssp             --HHHHHHHHHHHHHHHHTTS-HHHHHHHHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHcccccchhHHHHHHHHHHHHHHHHhc
Confidence            344555566666666666677777 59999999999988863

The SRA-RNAs encode stable proteins that are widely expressed and upregulated in breast cancer cell lines. SRA-RNA is a steroid receptor co-activator which acts as a functional RNA. This domain is also found at the C terminus of Sec31, a component of the coat protein complex II (COPII, which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). COPII has two main functions, the physical deformation of the endoplasmic reticulum membrane into vesicles and the selection of cargo molecules. ; PDB: 2YRU_A.

>PRK13182 racA polar chromosome segregation protein; Reviewed

Probab=85.97  E-value=6.8  Score=29.02  Aligned_cols=19  Identities=32%  Similarity=0.623  Sum_probs=17.5

Q ss_pred             HHHHHhhhHHHHHHHHHHH
Q 034611           41 KIDEMGNRINELEQSINDL   59 (89)
Q Consensus        41 riDeMg~RIDdLEksI~dL   59 (89)
                      -||||-++|-.||..|..+
T Consensus       126 e~ee~~~~l~~le~~~~~~  144 (175)
T PRK13182        126 EMEEMLERLQKLEARLKKL  144 (175)
T ss_pred             HHHHHHHHHHHHHHHHHHH
Confidence            4999999999999999993

>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []

Probab=85.60  E-value=3.2  Score=26.19  Aligned_cols=36  Identities=11%  Similarity=0.473  Sum_probs=26.3

Q ss_pred             HHHHHHHHHH---HHHHHHHHHHhhhHHHHHHHHHHHHH
Q 034611           26 QMQSRFQTMS---DSIVTKIDEMGNRINELEQSINDLRA   61 (89)
Q Consensus        26 QmQ~kFqtmS---~~I~~riDeMg~RIDdLEksI~dLm~   61 (89)
                      .+.+++..++   ..+-.-+.+++..|+.|+++|.+||.
T Consensus         4 elEn~~~~~~~~i~tvk~en~~i~~~ve~i~envk~ll~   42 (55)
T PF05377_consen    4 ELENELPRIESSINTVKKENEEISESVEKIEENVKDLLS   42 (55)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444444444   34446689999999999999999986

In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].

>PF10779 XhlA: Haemolysin XhlA; InterPro: IPR019715 Haemolysin XhlA is a cell-surface associated haemolysin that lyses the two most prevalent types of insect immune cells (granulocytes and plasmatocytes) as well as rabbit and horse erythrocytes []

Probab=85.20  E-value=2.2  Score=26.90  Aligned_cols=31  Identities=29%  Similarity=0.448  Sum_probs=21.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Q 034611           25 QQMQSRFQTMSDSIVTKIDEMGNRINELEQSINDL   59 (89)
Q Consensus        25 qQmQ~kFqtmS~~I~~riDeMg~RIDdLEksI~dL   59 (89)
                      +.++.|+..    |=.|+|++..|++.||+..+.+
T Consensus         2 ~~i~e~l~~----ie~~l~~~~~~i~~lE~~~~~~   32 (71)
T PF10779_consen    2 QDIKEKLNR----IETKLDNHEERIDKLEKRDAAN   32 (71)
T ss_pred             HHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHH
Confidence            456666644    4578888888888888775544

>PF01519 DUF16: Protein of unknown function DUF16; InterPro: IPR002862 Proteins that contain this domain are of unknown function

Probab=84.69  E-value=1.9  Score=30.32  Aligned_cols=21  Identities=14%  Similarity=0.431  Sum_probs=17.7

Q ss_pred             HHHHHHHHHHHHHhhhHHHHH
Q 034611           33 TMSDSIVTKIDEMGNRINELE   53 (89)
Q Consensus        33 tmS~~I~~riDeMg~RIDdLE   53 (89)
                      ..-+.|..+|..|+.|||.||
T Consensus        81 ktL~~I~~~L~~inkRLD~~E  101 (102)
T PF01519_consen   81 KTLQLILKTLQSINKRLDKME  101 (102)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHHHHhhcc
Confidence            444778899999999999987

It appears to be confined to proteins from Mycoplasma pneumoniae [].; PDB: 2BA2_C.

>PF04513 Baculo_PEP_C: Baculovirus polyhedron envelope protein, PEP, C terminus ; InterPro: IPR007601 Polyhedra are large crystalline occlusion bodies containing nucleopolyhedrovirus virions, and surrounded by an electron-dense structure called the polyhedron envelope or polyhedron calyx

Probab=84.56  E-value=7.6  Score=28.43  Aligned_cols=45  Identities=16%  Similarity=0.409  Sum_probs=26.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh
Q 034611           18 VFVQNLLQQMQSRFQTMSDSIVTKIDEMGNRINELEQSINDLRAE   62 (89)
Q Consensus        18 ~~Vq~LLqQmQ~kFqtmS~~I~~riDeMg~RIDdLEksI~dLm~q   62 (89)
                      +.+.+++.-++.++..++..|-..+.++..|+|.|..++.+-+.+
T Consensus        34 aql~~~~d~i~~~L~~l~~~l~~ll~~l~~~l~~l~~~L~~aln~   78 (140)
T PF04513_consen   34 AQLTTILDAIQTQLNALSTDLTNLLADLDTRLDTLLTNLNDALNQ   78 (140)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334445555566666666666666666666666666666555443

The polyhedron envelope (associated) protein PEP is thought to be an integral part of the polyhedron envelope. PEP is concentrated at the surface of polyhedra, and is thought to be important for the proper formation of the periphery of polyhedra. It is thought that PEP may stabilise polyhedra and protect them from fusion or aggregation [].; GO: 0005198 structural molecule activity, 0019028 viral capsid, 0019031 viral envelope

>PF10158 LOH1CR12: Tumour suppressor protein; InterPro: IPR018780 This entry represents a region of 130 amino acids that is the most conserved part of some hypothetical proteins involved in loss of heterozygosity, and thus, tumour suppression []

Probab=83.54  E-value=11  Score=26.94  Aligned_cols=48  Identities=21%  Similarity=0.417  Sum_probs=31.9

Q ss_pred             HHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh
Q 034611           14 ADMTVFVQNLLQQMQ---SRFQTMSDSIVTKIDEMGNRINELEQSINDLRAE   62 (89)
Q Consensus        14 ~dLT~~Vq~LLqQmQ---~kFqtmS~~I~~riDeMg~RIDdLEksI~dLm~q   62 (89)
                      .++-..+..++++|.   .+|..... .+.||++|+..|..+-..+++++.-
T Consensus        59 Kevd~~~~~l~~~~~erqk~~~k~ae-~L~kv~els~~L~~~~~lL~~~v~~  109 (131)
T PF10158_consen   59 KEVDQEIAKLLQQMVERQKRFAKFAE-QLEKVNELSQQLSRCQSLLNQTVPS  109 (131)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344445555555554   44555444 6788999999998888888877654

The exact function of these proteins is not known.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	89
3ci9_A	48	Crystal Structure Of The Human Hsbp1 Length = 48		2e-08

>pdb|3CI9|A Chain A, Crystal Structure Of The Human Hsbp1 Length = 48

Iteration: 1
 Score = 54.3 bits (129), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 26/48 (54%), Positives = 38/48 (79%), Gaps = 1/48 (2%)
Query: 9  PKQSTADMTVFVQNLLQQMQSRFQTMSDSIVTKIDEMGNRINELEQSI 56
          PK +  D+T  VQ LLQQMQ +FQT+SD I+ +ID+M +RI++LE++I
Sbjct: 1  PK-TVQDLTSVVQTLLQQMQDKFQTISDQIIGRIDDMSSRIDDLEKNI 47

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	89
3ci9_A	48	Heat shock factor-binding protein 1; triple helix,	3e-17

>3ci9_A Heat shock factor-binding protein 1; triple helix, nucleus, transcription; 1.80A {Homo sapiens} Length = 48

 Score = 67.5 bits (165), Expect = 3e-17
 Identities = 24/46 (52%), Positives = 37/46 (80%)

Query: 11 QSTADMTVFVQNLLQQMQSRFQTMSDSIVTKIDEMGNRINELEQSI 56
          ++  D+T  VQ LLQQMQ +FQT+SD I+ +ID+M +RI++LE++I
Sbjct: 2  KTVQDLTSVVQTLLQQMQDKFQTISDQIIGRIDDMSSRIDDLEKNI 47

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	89
3ci9_A	48	Heat shock factor-binding protein 1; triple helix,	99.94
2bez_C	77	E2 glycoprotein; coiled coil, membrane fusion, sev	96.06
1wyy_A	149	E2 glycoprotein; membrane fusion, severe acute res	94.0
3swf_A	74	CGMP-gated cation channel alpha-1; coiled-coil, as	93.78
3swy_A	46	Cyclic nucleotide-gated cation channel alpha-3; co	93.13
2pnv_A	43	Small conductance calcium-activated potassium chan	91.5
2ieq_A	109	S glycoprotein, spike glycoprotein, peplomer prote	89.83
1aq5_A	47	Matrilin-1, CMP, cartilage matrix protein; coiled-	89.62
2pnv_A	43	Small conductance calcium-activated potassium chan	88.65
1zva_A	77	E2 glycoprotein; membrane fusion, virus entry, coi	87.94
3n06_A	186	Prolactin, PRL; PH dependence, hematopoietic cytok	86.77
1pzq_A	60	Erythronolide synthase; four helix bundle, homodim	84.17
3iv1_A	78	Tumor susceptibility gene 101 protein; coiled_COIL	83.79
3p8c_D	279	Wiskott-aldrich syndrome protein family member 1;	83.53
3ci9_A	48	Heat shock factor-binding protein 1; triple helix,	83.3
4gif_A	45	Polycystic kidney disease 2-like 1 protein; coiled	82.51
1f6f_A	199	Placental lactogen; 4-helical bundle, alpha helica	81.01

>3ci9_A Heat shock factor-binding protein 1; triple helix, nucleus, transcription; 1.80A {Homo sapiens}

Probab=99.94  E-value=3.9e-28  Score=148.06  Aligned_cols=48  Identities=54%  Similarity=0.876  Sum_probs=43.1

Q ss_pred             CcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Q 034611            9 PKQSTADMTVFVQNLLQQMQSRFQTMSDSIVTKIDEMGNRINELEQSIN   57 (89)
Q Consensus         9 pkqs~~dLT~~Vq~LLqQmQ~kFqtmS~~I~~riDeMg~RIDdLEksI~   57 (89)
                      |+ +++|||+||++||+|||+||++||++|++||||||+|||+||+||+
T Consensus         1 p~-~~~dLt~~vq~LL~qmq~kFq~mS~~I~~riDdM~~RIDdLE~si~   48 (48)
T 3ci9_A            1 PK-TVQDLTSVVQTLLQQMQDKFQTISDQIIGRIDDMSSRIDDLEKNIA   48 (48)
T ss_dssp             CC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC----
T ss_pred             CC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhcC
Confidence            56 9999999999999999999999999999999999999999999985

>2bez_C E2 glycoprotein; coiled coil, membrane fusion, severe acute respiratory syndrome, viral protein; 1.6A {Sars coronavirus} SCOP: h.3.3.1 PDB: 1zv8_A 1zvb_A

Probab=96.06  E-value=0.014  Score=38.28  Aligned_cols=34  Identities=21%  Similarity=0.483  Sum_probs=29.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Q 034611           17 TVFVQNLLQQMQSRFQTMSDSIVTKIDEMGNRINELEQ   54 (89)
Q Consensus        17 T~~Vq~LLqQmQ~kFqtmS~~I~~riDeMg~RIDdLEk   54 (89)
                      .+.+..|+.|++..|+.+|    +-|.|.-.|+|.||+
T Consensus        43 ~~aL~~L~~qL~~NFgAIS----ssi~dIy~RLd~leA   76 (77)
T 2bez_C           43 AQALNTLVKQLSSNFGAIS----SVLNDILSRLDKVEA   76 (77)
T ss_dssp             HHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhhHHH----HHHHHHHHHHHhhhc
Confidence            4567889999999999987    556799999999996

>1wyy_A E2 glycoprotein; membrane fusion, severe acute respiratory syndrome, viral PR; 2.20A {Sars coronavirus} SCOP: h.3.3.1 PDB: 1wnc_A 2fxp_A

Probab=94.00  E-value=0.11  Score=37.50  Aligned_cols=41  Identities=22%  Similarity=0.468  Sum_probs=29.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH--HHHHHH
Q 034611           17 TVFVQNLLQQMQSRFQTMSDSIVTKIDEMGNRINELEQS--INDLRA   61 (89)
Q Consensus        17 T~~Vq~LLqQmQ~kFqtmS~~I~~riDeMg~RIDdLEks--I~dLm~   61 (89)
                      .+.+..|+.|++..|+.+|    +-|.|.-.|+|.||+.  |.-|++
T Consensus        56 ~~aL~~l~~qL~~nFgAIS----ssi~dIy~rLd~leAdaQVDRLIt   98 (149)
T 1wyy_A           56 AQALNTLVKQLSSNFGAIS----SVLNDILSRLDKVEAEVQIDRLIT   98 (149)
T ss_dssp             HHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHC-------
T ss_pred             HHHHHHHHHHHHHhhhHHH----HHHHHHHHHHHHHHHHHHHHHHHh
Confidence            4567889999999999887    5567999999999986  445555

>3swf_A CGMP-gated cation channel alpha-1; coiled-coil, assembly domain, transport protein; 2.14A {Bos taurus}

Probab=93.78  E-value=0.68  Score=29.92  Aligned_cols=51  Identities=12%  Similarity=0.240  Sum_probs=41.0

Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh
Q 034611           12 STADMTVFVQNLLQQMQSRFQTMSDSIVTKIDEMGNRINELEQSINDLRAE   62 (89)
Q Consensus        12 s~~dLT~~Vq~LLqQmQ~kFqtmS~~I~~riDeMg~RIDdLEksI~dLm~q   62 (89)
                      +..+-..-+++-|+.||.||..+-.+.-+-=--|-.||-.||+.+..+...
T Consensus         4 dlEEKv~~LE~sld~LQTrfARLLaEy~ssQ~KLKqRit~LE~~~~~~~~~   54 (74)
T 3swf_A            4 GLEEKVTRMESSVDLLQTRFARILAEYESMQQKLKQRLTKVEKFLKPLIDT   54 (74)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCC
Confidence            455666778889999999999877776666667789999999999987654

>3swy_A Cyclic nucleotide-gated cation channel alpha-3; coiled-coil, assembly domain, transport protein; 1.90A {Homo sapiens}

Probab=93.13  E-value=0.39  Score=28.47  Aligned_cols=43  Identities=19%  Similarity=0.307  Sum_probs=33.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Q 034611           14 ADMTVFVQNLLQQMQSRFQTMSDSIVTKIDEMGNRINELEQSI   56 (89)
Q Consensus        14 ~dLT~~Vq~LLqQmQ~kFqtmS~~I~~riDeMg~RIDdLEksI   56 (89)
                      .|-..-+++-|+.||.||..+-.+.-+-=--|-.||-.||..+
T Consensus         4 Eekv~~Le~~ld~LqTr~ArLlae~~ssq~KlKqRit~lE~~v   46 (46)
T 3swy_A            4 EEKVEQLGSSLDTLQTRFARLLAEYNATQMKMKQRLSQLESQV   46 (46)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            4455667888999999999877766666666778999998753

>2pnv_A Small conductance calcium-activated potassium channel protein 2; leucine zipper, SKCA channel, membrane protein; 2.10A {Rattus norvegicus}

Probab=91.50  E-value=0.28  Score=28.71  Aligned_cols=35  Identities=14%  Similarity=0.351  Sum_probs=19.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Q 034611           20 VQNLLQQMQSRFQTMSDSIVTKIDEMGNRINELEQSIND   58 (89)
Q Consensus        20 Vq~LLqQmQ~kFqtmS~~I~~riDeMg~RIDdLEksI~d   58 (89)
                      |-.|+..|++|=    +.+=.||+-|..|+|.|..++..
T Consensus         7 mydlvsel~~r~----e~LE~Ri~~LE~KLd~L~~~l~a   41 (43)
T 2pnv_A            7 MYDMISDLNERS----EDFEKRIVTLETKLETLIGSIHA   41 (43)
T ss_dssp             HHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHhh----HHHHHHHHHHHHHHHHHHHHHHc
Confidence            334444444443    34446666777777777666653

>2ieq_A S glycoprotein, spike glycoprotein, peplomer protein, E2; membrane fusion, virus entry, six-HEL bundle, viral protein; 1.75A {Human coronavirus}

Probab=89.83  E-value=0.15  Score=35.29  Aligned_cols=46  Identities=15%  Similarity=0.212  Sum_probs=23.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHhhhHHHHHHHHHHHHH
Q 034611           15 DMTVFVQNLLQQMQSRFQTMSDSIVTKID-----EMGNRINELEQSINDLRA   61 (89)
Q Consensus        15 dLT~~Vq~LLqQmQ~kFqtmS~~I~~riD-----eMg~RIDdLEksI~dLm~   61 (89)
                      +....+..|++|+...|+..|..|- +|=     +.-.|||.||+.-..|.+
T Consensus        40 ~q~~aLs~ll~QLn~NF~A~s~~lq-~~fn~t~lni~~elD~LEa~A~~l~~   90 (109)
T 2ieq_A           40 QQGSALNHLTSQLRHNFQSGGRGSG-RGGNLTYLNLSSELKQLEAKTASLFQ   90 (109)
T ss_dssp             HHHHHHHHHHCCC------------------CCCCCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhccCCCCcchHHH-HHhhhhHHHHHHHHHHHHHHHHHHHH
Confidence            3456677888888888887775553 221     667788888888777764

>1aq5_A Matrilin-1, CMP, cartilage matrix protein; coiled-coil, heptad repeat, interchain disulfide bonds, oligomerization domain, trimer; NMR {Gallus gallus} SCOP: h.1.6.1

Probab=89.62  E-value=1  Score=26.92  Aligned_cols=24  Identities=25%  Similarity=0.549  Sum_probs=17.4

Q ss_pred             HHHHHHHHHHHHHhhhHHHHHHHH
Q 034611           33 TMSDSIVTKIDEMGNRINELEQSI   56 (89)
Q Consensus        33 tmS~~I~~riDeMg~RIDdLEksI   56 (89)
                      +.-..+..|+++|+.||-.||+.|
T Consensus        23 ~~l~~Lt~kL~~vt~rle~lEnrl   46 (47)
T 1aq5_A           23 ELINTLQQKLEAVAKRIEALENKI   46 (47)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhc
Confidence            333444566789999999999865

>2pnv_A Small conductance calcium-activated potassium channel protein 2; leucine zipper, SKCA channel, membrane protein; 2.10A {Rattus norvegicus}

Probab=88.65  E-value=0.96  Score=26.35  Aligned_cols=36  Identities=17%  Similarity=0.262  Sum_probs=28.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh
Q 034611           27 MQSRFQTMSDSIVTKIDEMGNRINELEQSINDLRAE   62 (89)
Q Consensus        27 mQ~kFqtmS~~I~~riDeMg~RIDdLEksI~dLm~q   62 (89)
                      ||+.--.|-..+-+|=+++-.||+.||..+.+|-.+
T Consensus         3 mQn~mydlvsel~~r~e~LE~Ri~~LE~KLd~L~~~   38 (43)
T 2pnv_A            3 HMNIMYDMISDLNERSEDFEKRIVTLETKLETLIGS   38 (43)
T ss_dssp             --CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence            556666677778899999999999999999998765

>1zva_A E2 glycoprotein; membrane fusion, virus entry, coiled C conformational change, viral protein; 1.50A {Sars coronavirus} SCOP: h.3.3.1 PDB: 1zv8_B

Probab=87.94  E-value=0.53  Score=30.80  Aligned_cols=22  Identities=23%  Similarity=0.439  Sum_probs=18.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Q 034611           17 TVFVQNLLQQMQSRFQTMSDSI   38 (89)
Q Consensus        17 T~~Vq~LLqQmQ~kFqtmS~~I   38 (89)
                      .+.+..|+.|++..|+.+|..|
T Consensus        13 ~~aL~~L~~qL~~NFgAISSsi   34 (77)
T 1zva_A           13 AQALNTLVKQLSSNFGAISSVL   34 (77)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhhHHHHHH
Confidence            4678899999999999988654

>3n06_A Prolactin, PRL; PH dependence, hematopoietic cytokine, hormone-hormone recep complex; 2.00A {Homo sapiens} PDB: 3nce_A 3mzg_A 3ncc_A 2q98_A 3d48_P 3ncb_A 3n0p_A 3ncf_A 1n9d_A 1rw5_A 3npz_A 3ew3_A

Probab=86.77  E-value=6.6  Score=27.81  Aligned_cols=55  Identities=13%  Similarity=0.296  Sum_probs=42.7

Q ss_pred             CHHHHHHHHHHHHHH-------HHHHHH---HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhCCC
Q 034611           12 STADMTVFVQNLLQQ-------MQSRFQ---TMSDSIVTKIDEMGNRINELEQSINDLRAEMGVE   66 (89)
Q Consensus        12 s~~dLT~~Vq~LLqQ-------mQ~kFq---tmS~~I~~riDeMg~RIDdLEksI~dLm~qaG~e   66 (89)
                      +..+|..++-.||+-       ++.-+.   ..++.|+.|.-++..++.+|++-|..|+.+.+..
T Consensus        63 s~~~LL~~~l~Ll~SW~~PL~~L~~~~~~l~~~~~~il~Kakei~e~~~~L~egi~~i~~~~~~~  127 (186)
T 3n06_A           63 NQKDFLSLIVSILRSWNEPLYHLVTEVRGMQEAPEAILSKAVEIEEQTKRLLERMELIVSQVHPE  127 (186)
T ss_dssp             CHHHHHHHHHHHHHHTHHHHHHHHHHHHTSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence            467888777777653       333333   3468999999999999999999999999988543

>1pzq_A Erythronolide synthase; four helix bundle, homodimer, transferase; NMR {Saccharopolyspora erythraea} SCOP: a.34.3.1

Probab=84.17  E-value=0.36  Score=29.97  Aligned_cols=23  Identities=39%  Similarity=0.797  Sum_probs=19.5

Q ss_pred             HHhhhHHHHHHHHHHHHHhhCCC
Q 034611           44 EMGNRINELEQSINDLRAEMGVE   66 (89)
Q Consensus        44 eMg~RIDdLEksI~dLm~qaG~e   66 (89)
                      ++|.|+|+|||.+..|-.+.|.+
T Consensus         9 digdrldelekalealsaedghd   31 (60)
T 1pzq_A            9 DIGDRLDELEKALEALSAEDGHD   31 (60)
T ss_dssp             TTHHHHHHHHHHHHHHTTSSCCH
T ss_pred             chhhHHHHHHHHHHHhccccccc
Confidence            57899999999999998877754

>3iv1_A Tumor susceptibility gene 101 protein; coiled_COIL, tumorigenesis, CELL_cycle regulation, alternative splicing, cell cycle, cell division; HET: MSE; 2.50A {Homo sapiens}

Probab=83.79  E-value=6.7  Score=25.31  Aligned_cols=46  Identities=20%  Similarity=0.403  Sum_probs=32.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHhhhHH----HHHHHHHHHHH
Q 034611           16 MTVFVQNLLQQMQSRFQTMSDSIV-------------TKIDEMGNRIN----ELEQSINDLRA   61 (89)
Q Consensus        16 LT~~Vq~LLqQmQ~kFqtmS~~I~-------------~riDeMg~RID----dLEksI~dLm~   61 (89)
                      |+++=+.|=..|+.+|.....+|-             .||++|-+||+    +|++||.-|-.
T Consensus         5 lSAVeDKLRrrl~E~~~q~qaEl~sLrrT~~EL~~G~~KL~~mi~~l~~E~~~l~~ni~~lk~   67 (78)
T 3iv1_A            5 ISAVSDKLRWRMKEEMDRAQAELNALKRTEEDLKKGHQKLEEMVTRLDQEVAEVDKNIELLKK   67 (78)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            456666666778888877766664             46888888775    68888876643

>3p8c_D Wiskott-aldrich syndrome protein family member 1; actin polymerization, protein binding; 2.29A {Homo sapiens}

Probab=83.53  E-value=2.1  Score=33.09  Aligned_cols=40  Identities=8%  Similarity=0.402  Sum_probs=25.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Q 034611           15 DMTVFVQNLLQQMQSRFQTMSDSIVTKIDEMGNRINELEQSIND   58 (89)
Q Consensus        15 dLT~~Vq~LLqQmQ~kFqtmS~~I~~riDeMg~RIDdLEksI~d   58 (89)
                      +|+.+..++++.|..-|..    |..|+..+..||+.|+..+..
T Consensus        43 dLs~~A~dIF~eL~~e~~~----~~~R~~~L~~RI~~L~~~v~~   82 (279)
T 3p8c_D           43 SLSKYAEDIFGELFNEAHS----FSFRVNSLQERVDRLSVSVTQ   82 (279)
T ss_dssp             HHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHhccc
Confidence            4555555555555555544    347888888888888887753

>3ci9_A Heat shock factor-binding protein 1; triple helix, nucleus, transcription; 1.80A {Homo sapiens}

Probab=83.30  E-value=3.9  Score=24.17  Aligned_cols=39  Identities=33%  Similarity=0.499  Sum_probs=26.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Q 034611           21 QNLLQQMQSRFQTMSDSIVTKIDEMGNRINELEQSINDL   59 (89)
Q Consensus        21 q~LLqQmQ~kFqtmS~~I~~riDeMg~RIDdLEksI~dL   59 (89)
                      +.|-.-+|+=++.|.+.+-.-=+.+-+|||+.-..|.+|
T Consensus         5 ~dLt~~vq~LL~qmq~kFq~mS~~I~~riDdM~~RIDdL   43 (48)
T 3ci9_A            5 QDLTSVVQTLLQQMQDKFQTISDQIIGRIDDMSSRIDDL   43 (48)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence            445555666666666555544466667899999988876

>4gif_A Polycystic kidney disease 2-like 1 protein; coiled-coil, trimer, Trp channel, transient receptor potenti channel, polycystic kidney disease (PKD); 2.80A {Homo sapiens}

Probab=82.51  E-value=5.6  Score=23.44  Aligned_cols=39  Identities=26%  Similarity=0.573  Sum_probs=27.0

Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Q 034611           12 STADMTVFVQNLLQQMQSRFQTMSDSIVTKIDEMGNRINELEQS   55 (89)
Q Consensus        12 s~~dLT~~Vq~LLqQmQ~kFqtmS~~I~~riDeMg~RIDdLEks   55 (89)
                      |.+|+..+...+||     .++.-..|.++||-+++++.-+|++
T Consensus         5 s~eeF~~L~rRVlq-----lE~~l~gI~S~idav~~Kl~~~Er~   43 (45)
T 4gif_A            5 SGEEFYMLTRRVLQ-----LETVLEGVVSQIDAVGSKLKMLERK   43 (45)
T ss_dssp             CHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHTHHHHHHHH
T ss_pred             CHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            44556555555543     4555567889999999999888874

>1f6f_A Placental lactogen; 4-helical bundle, alpha helical bundle, ternary complex, FN III domains, beta sheet domains, cytokine-receptor complex; 2.30A {Ovis aries} SCOP: a.26.1.1

Probab=81.01  E-value=5.8  Score=28.61  Aligned_cols=53  Identities=15%  Similarity=0.258  Sum_probs=40.9

Q ss_pred             CHHHHHHHHHHHH-------HHHHHHHHH---HHHHHHHHHHHHhhhHHHHHHHHHHHHHhhC
Q 034611           12 STADMTVFVQNLL-------QQMQSRFQT---MSDSIVTKIDEMGNRINELEQSINDLRAEMG   64 (89)
Q Consensus        12 s~~dLT~~Vq~LL-------qQmQ~kFqt---mS~~I~~riDeMg~RIDdLEksI~dLm~qaG   64 (89)
                      +..+|-.++-.||       +.|..-|.+   +++.|++|-.++..++.+|+.-|.-|+.+.+
T Consensus        78 s~~~LL~~~l~Ll~sW~~PL~~L~~~~~~~~~~p~~ilska~~I~ek~~~L~egi~~i~~~~~  140 (199)
T 1f6f_A           78 EDKILFKLVISLLHSWDEPLHHAVTELANSKGTSPALLTKAQEIKEKAKVLVDGVEVIQKRIH  140 (199)
T ss_dssp             CHHHHHHHHHHHHHTTHHHHHHHHHHHHC-----CHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHcccccCcchhcchHHHHHHHHHHHHHHHHHHHHHcc
Confidence            4667777776664       455666655   4588999999999999999999999999864

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	89
d1f6fa_	197	Prolactin (placental lactogen) {Sheep (Ovis aries)	86.79
d1seta1	110	Seryl-tRNA synthetase (SerRS) {Thermus thermophilu	81.23
d1cnt1_	177	Ciliary neurotrophic factor (CNTF) {Human (Homo sa	80.97

>d1f6fa_ a.26.1.1 (A:) Prolactin (placental lactogen) {Sheep (Ovis aries) [TaxId: 9940]}

class: All alpha proteins
fold: 4-helical cytokines
superfamily: 4-helical cytokines
family: Long-chain cytokines
domain: Prolactin (placental lactogen)
species: Sheep (Ovis aries) [TaxId: 9940]

Probab=86.79  E-value=2.1  Score=29.04  Aligned_cols=53  Identities=15%  Similarity=0.235  Sum_probs=39.2

Q ss_pred             HHHHHHHHHHH-------HHHHHHHHH---HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhCC
Q 034611           13 TADMTVFVQNL-------LQQMQSRFQ---TMSDSIVTKIDEMGNRINELEQSINDLRAEMGV   65 (89)
Q Consensus        13 ~~dLT~~Vq~L-------LqQmQ~kFq---tmS~~I~~riDeMg~RIDdLEksI~dLm~qaG~   65 (89)
                      ..+|-.++-.|       |+.|+.-|.   .+++.|++|..+|..++.+|++-|..|+.+.+.
T Consensus        79 ~~~LLk~~l~Ll~sW~~PL~~L~~~l~~~~~~~~~ilska~ei~~k~~~L~egi~~i~~~~~~  141 (197)
T d1f6fa_          79 DKILFKLVISLLHSWDEPLHHAVTELANSKGTSPALLTKAQEIKEKAKVLVDGVEVIQKRIHP  141 (197)
T ss_dssp             HHHHHHHHHHHHHTTHHHHHHHHHHHHC-----CHHHHHHHHHHHHHHHHHHHHHHHHHHHST
T ss_pred             hHHHHHHHHHHHHHHHhHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence            34555555555       445666665   457899999999999999999999999999853

>d1seta1 a.2.7.1 (A:1-110) Seryl-tRNA synthetase (SerRS) {Thermus thermophilus, strain hb27 [TaxId: 274]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: tRNA-binding arm
family: Seryl-tRNA synthetase (SerRS)
domain: Seryl-tRNA synthetase (SerRS)
species: Thermus thermophilus, strain hb27 [TaxId: 274]

Probab=81.23  E-value=3.9  Score=24.59  Aligned_cols=53  Identities=21%  Similarity=0.404  Sum_probs=33.2

Q ss_pred             HHHHHHHHHHHHHHHHH-----------HHHHHHHhhhHHHHHHHHHHHHHhh-----CCCCCCCCCCC
Q 034611           22 NLLQQMQSRFQTMSDSI-----------VTKIDEMGNRINELEQSINDLRAEM-----GVEGSPSPLTP   74 (89)
Q Consensus        22 ~LLqQmQ~kFqtmS~~I-----------~~riDeMg~RIDdLEksI~dLm~qa-----G~e~~~~~~~~   74 (89)
                      .-+++++.+-..+|.+|           +.++-..+.+|..||+.+..+-.+.     .+.+.|.+++|
T Consensus        42 ~~~e~l~~~rN~~sk~i~k~~~~~~~~l~~~~k~lk~~i~~le~~~~~~~~~l~~~ll~iPNi~~~~VP  110 (110)
T d1seta1          42 KRLQEVQTERNQVAKRVPKAPPEEKEALIARGKALGEEAKRLEEALREKEARLEALLLQVPLPPWPGAP  110 (110)
T ss_dssp             HHHHHHHHHHHHHHHHGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCTTSC
T ss_pred             HHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCccCc
Confidence            33556666666666554           4556666777777777666665542     47777777765

>d1cnt1_ a.26.1.1 (1:) Ciliary neurotrophic factor (CNTF) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: 4-helical cytokines
superfamily: 4-helical cytokines
family: Long-chain cytokines
domain: Ciliary neurotrophic factor (CNTF)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=80.97  E-value=1.1  Score=30.71  Aligned_cols=49  Identities=14%  Similarity=0.185  Sum_probs=38.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhCCCCCCC
Q 034611           22 NLLQQMQSRFQTMSDSIVTKIDEMGNRINELEQSINDLRAEMGVEGSPS   70 (89)
Q Consensus        22 ~LLqQmQ~kFqtmS~~I~~riDeMg~RIDdLEksI~dLm~qaG~e~~~~   70 (89)
                      .++.+-|..|.-....+..++.++-.++.-|=.+|+.+|+..|..-++.
T Consensus        79 ~v~~dqq~dLnP~~~~l~~~L~~~~~~~~gL~~~i~~im~~Lg~~~p~e  127 (177)
T d1cnt1_          79 RLLEDQQVHFTPTEGDFHQAIHTLLLQVAAFAYQIEELMILLEYKIPRN  127 (177)
T ss_dssp             HHHHHHHTTTSSSCSHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCC
T ss_pred             HHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCC
Confidence            3344444556667777889999999999999999999999999754433