Citrus Sinensis ID: 034645

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------
Protein Sequence
MCSLKHKIMGRKAGTLYINPKKFGNIAKPCMKEMITFLNCMSLNQMNSEKCARQKELLSACMDAQTNKKRKPWGSINYHLQRLNRGRK
Secondary Structure (PSIPRED)
cccHHHHHHHccccccEEcccccccccccHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHcccc
Secondary Structure Prediction (SSPRO)
cccHHHHHHccccccEEEcccHccccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHccccc
Coil and Loop (DISEMBL)
mcslkhkimgrkagtlyinpkkfgniaKPCMKEMITFLNCmslnqmnseKCARQKELLSACMDAqtnkkrkpwgsinyHLQRLNRGRK
Flexible Loop (DISEMBL)
mcslkhkimgrkagtlyinpkkfGNIAKPCMKEMITFLNCMSLNQMNSEKCARQKELLSACMDAqtnkkrkpwgsinyhlqrlnrgrk
Low Complexity Region (SEG)
MCSLKHKIMGRKAGTLYINPKKFGNIAKPCMKEMITFLNCMSLNQMNSEKCARQKELLSACMDAQTNKKRKPWGSINYHLQRLNRGRK
Disordered region (IsUnstruct)
*******IMGRKAGTLYINPKKFGNIAKPCMKEMITFLNCMSLNQM*****************************INY**********
Disordered Region (DISOPRED)
********MGRKAGTLYINPKKFGNIAKPCMKEMITFLNCMSLNQMNSEKCARQKELL*******************YHL*RLN****
Disordered Region (DISEMBL)
MCSLKHKIMGRKAGTLYINPKKFGNIAKPCMKEMITFLNCMSLNQMNSEKCARQKELLSACMDAQTNKKRKPWGSINYHLQRLNRGRK
Disordered Region (DISPRO)
MCSLKHKIMGRKAGTLYINPKKFGNIAKPCMKEMITFLNCMSLNQMNSEKCARQKELLSACMDAQTNKKRKPWGSI*Y**QRLN****
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MCSLKHKIMGRKAGTLYINPKKFGNIAKPCMKEMITFLNCMSLNQMNSEKCARQKELLSACMDAQTNKKRKPWGSINYHLQRLNRGRK
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	88
255587024	186	conserved hypothetical protein [Ricinus	0.909	0.430	0.812	2e-31
449452947	80	PREDICTED: uncharacterized protein LOC10	0.909	1.0	0.762	5e-31
359478967	80	PREDICTED: uncharacterized protein LOC10	0.909	1.0	0.762	8e-30
116830697	92	unknown [Arabidopsis thaliana]	0.965	0.923	0.670	2e-28
145324875	91	uncharacterized protein [Arabidopsis tha	0.965	0.934	0.670	3e-28
356524998	80	PREDICTED: uncharacterized protein LOC10	0.909	1.0	0.725	3e-28
356512231	80	PREDICTED: uncharacterized protein LOC10	0.909	1.0	0.712	7e-28
145324877	80	uncharacterized protein [Arabidopsis tha	0.909	1.0	0.7	1e-27
388507810	80	unknown [Lotus japonicus]	0.909	1.0	0.675	2e-24
388501818	80	unknown [Lotus japonicus]	0.909	1.0	0.662	1e-23

>gi|255587024|ref|XP_002534103.1| conserved hypothetical protein [Ricinus communis] gi|223525843|gb|EEF28278.1| conserved hypothetical protein [Ricinus communis]

 Score =  139 bits (351), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 65/80 (81%), Positives = 73/80 (91%)

Query: 9  MGRKAGTLYINPKKFGNIAKPCMKEMITFLNCMSLNQMNSEKCARQKELLSACMDAQTNK 68
          MGRKAGTLYINPKKFG+++KPCMKEMI+FLNC+SLN +N EKC RQKE LSACM+AQT+ 
Sbjct: 1  MGRKAGTLYINPKKFGSLSKPCMKEMISFLNCLSLNHVNDEKCVRQKEQLSACMEAQTSN 60

Query: 69 KRKPWGSINYHLQRLNRGRK 88
          KRK  GSINYHLQRLNRGRK
Sbjct: 61 KRKSLGSINYHLQRLNRGRK 80

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449452947|ref|XP_004144220.1| PREDICTED: uncharacterized protein LOC101212239 [Cucumis sativus] gi|449489293|ref|XP_004158270.1| PREDICTED: uncharacterized protein LOC101229817 [Cucumis sativus]

 Score =  138 bits (347), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 61/80 (76%), Positives = 71/80 (88%)

Query: 9  MGRKAGTLYINPKKFGNIAKPCMKEMITFLNCMSLNQMNSEKCARQKELLSACMDAQTNK 68
          MGRKAG+L+INPKKFGN+ KPCMKEM++FLNC++LNQ N EKC R KELL+ CMDAQ  +
Sbjct: 1  MGRKAGSLFINPKKFGNLNKPCMKEMVSFLNCIALNQNNDEKCTRHKELLNTCMDAQATR 60

Query: 69 KRKPWGSINYHLQRLNRGRK 88
           +KPWGSINYHLQRLNRGRK
Sbjct: 61 SKKPWGSINYHLQRLNRGRK 80

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359478967|ref|XP_003632197.1| PREDICTED: uncharacterized protein LOC100854232 isoform 1 [Vitis vinifera] gi|359478969|ref|XP_003632198.1| PREDICTED: uncharacterized protein LOC100854232 isoform 2 [Vitis vinifera] gi|297746099|emb|CBI16155.3| unnamed protein product [Vitis vinifera]

 Score =  134 bits (336), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 61/80 (76%), Positives = 69/80 (86%)

Query: 9  MGRKAGTLYINPKKFGNIAKPCMKEMITFLNCMSLNQMNSEKCARQKELLSACMDAQTNK 68
          MGRKAG LYINPKKFG + KPCMKEMITFLNC++LNQ N +KC R K+LL+ACMDAQT K
Sbjct: 1  MGRKAGGLYINPKKFGTLQKPCMKEMITFLNCLALNQNNDDKCVRHKDLLNACMDAQTGK 60

Query: 69 KRKPWGSINYHLQRLNRGRK 88
           ++ WGSINYHLQRLNRG K
Sbjct: 61 NKRGWGSINYHLQRLNRGSK 80

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|116830697|gb|ABK28306.1| unknown [Arabidopsis thaliana]

 Score =  129 bits (324), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 57/85 (67%), Positives = 70/85 (82%)

Query: 4  LKHKIMGRKAGTLYINPKKFGNIAKPCMKEMITFLNCMSLNQMNSEKCARQKELLSACMD 63
          ++  IMGRKAG LYINPKK GN+AKPCMKEM++FLNCM+LN +  +KC +QK+LLS CM 
Sbjct: 7  VERAIMGRKAGNLYINPKKLGNLAKPCMKEMVSFLNCMALNNIKDDKCEKQKQLLSVCMQ 66

Query: 64 AQTNKKRKPWGSINYHLQRLNRGRK 88
           Q++ K K WG+INYHLQRL RGRK
Sbjct: 67 GQSDHKNKSWGNINYHLQRLTRGRK 91

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|145324875|ref|NP_001077684.1| uncharacterized protein [Arabidopsis thaliana] gi|98961697|gb|ABF59178.1| unknown protein [Arabidopsis thaliana] gi|332194028|gb|AEE32149.1| uncharacterized protein [Arabidopsis thaliana]

 Score =  129 bits (323), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 57/85 (67%), Positives = 70/85 (82%)

Query: 4  LKHKIMGRKAGTLYINPKKFGNIAKPCMKEMITFLNCMSLNQMNSEKCARQKELLSACMD 63
          ++  IMGRKAG LYINPKK GN+AKPCMKEM++FLNCM+LN +  +KC +QK+LLS CM 
Sbjct: 7  VERAIMGRKAGNLYINPKKLGNLAKPCMKEMVSFLNCMALNNIKDDKCEKQKQLLSVCMQ 66

Query: 64 AQTNKKRKPWGSINYHLQRLNRGRK 88
           Q++ K K WG+INYHLQRL RGRK
Sbjct: 67 GQSDHKNKSWGNINYHLQRLTRGRK 91

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356524998|ref|XP_003531114.1| PREDICTED: uncharacterized protein LOC100499760 [Glycine max] gi|255626359|gb|ACU13524.1| unknown [Glycine max]

 Score =  129 bits (323), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 58/80 (72%), Positives = 68/80 (85%)

Query: 9  MGRKAGTLYINPKKFGNIAKPCMKEMITFLNCMSLNQMNSEKCARQKELLSACMDAQTNK 68
          MGRKAGTL+INPK+FGN+ KPCMKEM  FL+CM+ N  ++E CARQKELL+ C+DAQ+ K
Sbjct: 1  MGRKAGTLFINPKRFGNLQKPCMKEMALFLSCMAANHSDTEACARQKELLNVCIDAQSKK 60

Query: 69 KRKPWGSINYHLQRLNRGRK 88
           RK WGSINY LQRLNRGRK
Sbjct: 61 NRKSWGSINYQLQRLNRGRK 80

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356512231|ref|XP_003524824.1| PREDICTED: uncharacterized protein LOC100527812 [Glycine max] gi|255633264|gb|ACU16988.1| unknown [Glycine max]

 Score =  127 bits (320), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 57/80 (71%), Positives = 68/80 (85%)

Query: 9  MGRKAGTLYINPKKFGNIAKPCMKEMITFLNCMSLNQMNSEKCARQKELLSACMDAQTNK 68
          MGRKAGTL+INPK+FGN+ KPCMKEM  FL+CM+ N  +++ CARQKELL+ C+DAQ+ K
Sbjct: 1  MGRKAGTLFINPKRFGNLQKPCMKEMALFLSCMAANHSDTDACARQKELLNVCIDAQSKK 60

Query: 69 KRKPWGSINYHLQRLNRGRK 88
           RK WGSINY LQRLNRGRK
Sbjct: 61 NRKSWGSINYQLQRLNRGRK 80

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|145324877|ref|NP_001077685.1| uncharacterized protein [Arabidopsis thaliana] gi|297846926|ref|XP_002891344.1| hypothetical protein ARALYDRAFT_314187 [Arabidopsis lyrata subsp. lyrata] gi|297337186|gb|EFH67603.1| hypothetical protein ARALYDRAFT_314187 [Arabidopsis lyrata subsp. lyrata] gi|332194029|gb|AEE32150.1| uncharacterized protein [Arabidopsis thaliana]

 Score =  126 bits (317), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 56/80 (70%), Positives = 67/80 (83%)

Query: 9  MGRKAGTLYINPKKFGNIAKPCMKEMITFLNCMSLNQMNSEKCARQKELLSACMDAQTNK 68
          MGRKAG LYINPKK GN+AKPCMKEM++FLNCM+LN +  +KC +QK+LLS CM  Q++ 
Sbjct: 1  MGRKAGNLYINPKKLGNLAKPCMKEMVSFLNCMALNNIKDDKCEKQKQLLSVCMQGQSDH 60

Query: 69 KRKPWGSINYHLQRLNRGRK 88
          K K WG+INYHLQRL RGRK
Sbjct: 61 KNKSWGNINYHLQRLTRGRK 80

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388507810|gb|AFK41971.1| unknown [Lotus japonicus]

 Score =  116 bits (290), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 54/80 (67%), Positives = 64/80 (80%)

Query: 9  MGRKAGTLYINPKKFGNIAKPCMKEMITFLNCMSLNQMNSEKCARQKELLSACMDAQTNK 68
          MGRKAG LYINPK+FG + KPCMKEM  FLNCM+    +   CA+QKELL+AC+D+Q+ K
Sbjct: 1  MGRKAGGLYINPKRFGQLHKPCMKEMTMFLNCMATCNSDINACAQQKELLNACIDSQSKK 60

Query: 69 KRKPWGSINYHLQRLNRGRK 88
          KR  WGSINY LQRL+RGRK
Sbjct: 61 KRNSWGSINYQLQRLSRGRK 80

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388501818|gb|AFK38975.1| unknown [Lotus japonicus]

 Score =  114 bits (284), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 53/80 (66%), Positives = 63/80 (78%)

Query: 9  MGRKAGTLYINPKKFGNIAKPCMKEMITFLNCMSLNQMNSEKCARQKELLSACMDAQTNK 68
          MGRKAG LYINPK+ G + KPCMKEM  FLNCM+    +   CA+QKELL+AC+D+Q+ K
Sbjct: 1  MGRKAGGLYINPKRLGQLHKPCMKEMTMFLNCMATCNSDINACAQQKELLNACIDSQSKK 60

Query: 69 KRKPWGSINYHLQRLNRGRK 88
          KR  WGSINY LQRL+RGRK
Sbjct: 61 KRNSWGSINYQLQRLSRGRK 80

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	88
TAIR|locus:4010713530	91	AT1G47278 "AT1G47278" [Arabido	0.965	0.934	0.670	6.2e-30
POMBASE|SPAC24C9.13c	88	mrp10 "mitochondrial ribosomal	0.772	0.772	0.361	9e-06

TAIR|locus:4010713530 AT1G47278 "AT1G47278" [Arabidopsis thaliana (taxid:3702)]

 Score = 331 (121.6 bits), Expect = 6.2e-30, P = 6.2e-30
 Identities = 57/85 (67%), Positives = 70/85 (82%)

Query:     4 LKHKIMGRKAGTLYINPKKFGNIAKPCMKEMITFLNCMSLNQMNSEKCARQKELLSACMD 63
             ++  IMGRKAG LYINPKK GN+AKPCMKEM++FLNCM+LN +  +KC +QK+LLS CM 
Sbjct:     7 VERAIMGRKAGNLYINPKKLGNLAKPCMKEMVSFLNCMALNNIKDDKCEKQKQLLSVCMQ 66

Query:    64 AQTNKKRKPWGSINYHLQRLNRGRK 88
              Q++ K K WG+INYHLQRL RGRK
Sbjct:    67 GQSDHKNKSWGNINYHLQRLTRGRK 91

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

POMBASE|SPAC24C9.13c mrp10 "mitochondrial ribosomal protein subunit Mrp10 (predicted)" [Schizosaccharomyces pombe (taxid:4896)]

 Score = 103 (41.3 bits), Expect = 9.0e-06, P = 9.0e-06
 Identities = 26/72 (36%), Positives = 37/72 (51%)

Query:    16 LYINPKKFGNIAKPCMKEMITFLNCMSLN--QMNSEKCARQKELLSACMDAQTNKKRKPW 73
             L + PK+  N   PC +EM   L C   +  Q ++ +CA     L  CM   T++K K  
Sbjct:    17 LRVRPKREKNTI-PCGQEMAALLGCWQNHGGQTDTAQCANLVAALENCMKT-THRKTKSE 74

Query:    74 GSINYHLQRLNR 85
              +INYHL RL +
Sbjct:    75 NTINYHLARLGK 86


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.322   0.132   0.410    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0       88        88   0.00091  102 3  11 22  0.42    29
                                                     29  0.49    30


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  2
  No. of states in DFA:  543 (58 KB)
  Total size of DFA:  110 KB (2074 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  9.51u 0.14s 9.65t   Elapsed:  00:00:00
  Total cpu time:  9.51u 0.14s 9.65t   Elapsed:  00:00:00
  Start:  Thu May  9 22:18:24 2013   End:  Thu May  9 22:18:24 2013

GO:0003735 "structural constituent of ribosome" evidence=ISS

GO:0005634 "nucleus" evidence=IDA

GO:0005739 "mitochondrion" evidence=IDA

GO:0005763 "mitochondrial small ribosomal subunit" evidence=ISS

GO:0005829 "cytosol" evidence=IDA

GO:0006412 "translation" evidence=ISS

GO:0032543 "mitochondrial translation" evidence=NAS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00024352001 SubName- Full=Chromosome chr6 scaffold_3, whole genome shotgun sequence; (80 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	88
KOG4695	122	consensus Uncharacterized conserved protein [Funct	99.04
PF06747	35	CHCH: CHCH domain; InterPro: IPR010625 A conserved	98.54
PF08991	67	DUF1903: Domain of unknown function (DUF1903); Int	97.02
KOG4618	74	consensus Uncharacterized conserved protein [Funct	93.38
PF07802	76	GCK: GCK domain; InterPro: IPR012891 This domain i	91.67
PF08583	69	Cmc1: Cytochrome c oxidase biogenesis protein Cmc1	87.6
KOG4090	157	consensus Uncharacterized conserved protein [Funct	87.59
KOG4149	129	consensus Uncharacterized conserved protein [Funct	85.17
KOG4138	96	consensus Unchracterized conserved protein (estrog	81.43

>KOG4695 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.04  E-value=3.2e-10  Score=78.23  Aligned_cols=46  Identities=15%  Similarity=0.481  Sum_probs=42.2

Q ss_pred             CcCCCCCCCCChHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHh
Q 034645           19 NPKKFGNIAKPCMKEMITFLNCMSLNQMNSEKCARQKELLSACMDA   64 (88)
Q Consensus        19 ~pKk~~~~~~pC~~eMs~lL~Cwasng~~~~~Ca~~~~~L~~Cm~~   64 (88)
                      -.++.+.+++.|++||++|++||+.|.|++..|.++++.|.+|...
T Consensus        37 ~g~~~~gs~~tC~qEm~vlfaClK~nEF~d~~C~Kei~~f~dC~~~   82 (122)
T KOG4695|consen   37 EGRREKGSEATCIQEMSVLFACLKQNEFRDDACRKEIQGFLDCAAR   82 (122)
T ss_pred             cccCCcccchHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHH
Confidence            3567777899999999999999999999999999999999999765

>PF06747 CHCH: CHCH domain; InterPro: IPR010625 A conserved motif was identified in the LOC118487 protein was called the CHCH motif

Probab=98.54  E-value=6.6e-08  Score=52.58  Aligned_cols=34  Identities=26%  Similarity=0.648  Sum_probs=31.8

Q ss_pred             hHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHH
Q 034645           30 CMKEMITFLNCMSLNQMNSEKCARQKELLSACMD   63 (88)
Q Consensus        30 C~~eMs~lL~Cwasng~~~~~Ca~~~~~L~~Cm~   63 (88)
                      |..||..+|.||.+|+++.+.|..+.++|++|+.
T Consensus         1 C~~e~~~~~~Cl~~n~~~~~~C~~~~~~~~~C~~   34 (35)
T PF06747_consen    1 CAEEMKAYLACLKENNFDWSKCRKEFKAYKECRM   34 (35)
T ss_dssp             THHHHHHHHHHHHCH-SSTCCCHHHHHHHHHHHC
T ss_pred             CHHHHHHHHHHHHHCCCcHHhhHHHHHHHHHHhh
Confidence            8899999999999999999999999999999974

Alignment of this protein with related members showed the presence of three subgroups of proteins, which are called the S (Small), N (N-terminal extended) and C (C-terminal extended) subgroups. All three sub-groups of proteins have in common that they contain a predicted conserved [coiled coil 1]-[helix 1]-[coiled coil 2]-[helix 2] domain (CHCH domain). Within each helix of the CHCH domain, there are two cysteines present in a C-X9-C motif. The N-group contains an additional double helix domain, and each helix contains the C-X9-C motif. This family contains a number of characterised proteins: Cox19 protein - a nuclear gene of Saccharomyces cerevisiae, codes for an 11 kDa protein (Cox19p) required for expression of cytochrome oxidase. Because cox19 mutants are able to synthesise the mitochondrial and nuclear gene products of cytochrome oxidase, Cox19p probably functions post-translationally during assembly of the enzyme. Cox19p is present in the cytoplasm and mitochondria, where it exists as a soluble intermembrane protein. This dual location is similar to what was previously reported for Cox17p, a low molecular weight copper protein thought to be required for maturation of the CuA centre of subunit 2 of cytochrome oxidase. Cox19p have four conserved potential metal ligands, these are three cysteines and one histidine. Mrp10 - belongs to the class of yeast mitochondrial ribosomal proteins that are essential for translation []. Eukaryotic NADH-ubiquinone oxidoreductase 19 kDa (NDUFA8) subunit []. The CHCH domain was previously called DUF657 []. ; PDB: 2ZXT_A 3A3C_A 2L0Y_A 2K3J_A.

>PF08991 DUF1903: Domain of unknown function (DUF1903); InterPro: IPR009069 The mature-T-cell-proliferation (MTCP1) putative oncogene was identified for its involvement in t(X:14)(q28;q11)-associated T-cell leukaemia []

Probab=97.02  E-value=0.00072  Score=42.56  Aligned_cols=38  Identities=26%  Similarity=0.577  Sum_probs=34.7

Q ss_pred             CChHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHhh
Q 034645           28 KPCMKEMITFLNCMSLNQMNSEKCARQKELLSACMDAQ   65 (88)
Q Consensus        28 ~pC~~eMs~lL~Cwasng~~~~~Ca~~~~~L~~Cm~~~   65 (88)
                      +||..+--.+..|+..|+|+.+.|...+++|+.|-...
T Consensus         2 ~PC~~~Ac~iq~CL~~N~Yd~~kC~~~i~~l~~Cck~~   39 (67)
T PF08991_consen    2 DPCQKEACAIQKCLQRNNYDESKCQDYIDALYECCKKF   39 (67)
T ss_dssp             -TTHHHHHHHHHHHHHTTT-CCCTHHHHHHHHHHHTTS
T ss_pred             cchHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHH
Confidence            69999999999999999999999999999999998777

MTCP1 is alternatively spliced to produce two completely distinct proteins: the small mitochondrial protein, p8MTCP1, and the protein p13MTCP1, which shows strong homology to another oncogene product, p14TCL1. While p13MTCP1 expression appears to be restricted to mature T-cell proliferation with t(X,14) translocations, the mitochondrial p8MTCP1 is expressed at low levels in most human tissues, and is over-expressed in the proliferating T-cells. The biological function of p8MTCP1 is still unknown, but it appears to play a role in oncogenesis. The structure of p8MTCP1 reveals a disulphide-rich, irregular array of three helices [].; PDB: 2HP8_A 1EI0_A 1HP8_A.

>KOG4618 consensus Uncharacterized conserved protein [Function unknown]

Probab=93.38  E-value=0.26  Score=31.74  Aligned_cols=38  Identities=21%  Similarity=0.524  Sum_probs=35.6

Q ss_pred             CCChHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHh
Q 034645           27 AKPCMKEMITFLNCMSLNQMNSEKCARQKELLSACMDA   64 (88)
Q Consensus        27 ~~pC~~eMs~lL~Cwasng~~~~~Ca~~~~~L~~Cm~~   64 (88)
                      -+||+.|-++-+.|+-.|+|+-++|...-...++|-..
T Consensus        21 ~nPCl~es~aSfkCLeennyDRsKCq~yFd~YkeCKkf   58 (74)
T KOG4618|consen   21 YNPCLLESSASFKCLEENNYDRSKCQDYFDVYKECKKF   58 (74)
T ss_pred             CChHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHH
Confidence            49999999999999999999999999999999999754

>PF07802 GCK: GCK domain; InterPro: IPR012891 This domain is found in proteins carrying other domains known to be involved in intracellular signalling pathways (such as IPR001806 from INTERPRO) indicating that it might also be involved in these pathways

Probab=91.67  E-value=0.54  Score=30.28  Aligned_cols=40  Identities=23%  Similarity=0.514  Sum_probs=33.5

Q ss_pred             CCChHHHHHHHHHHH----hcCC-CChHHHHHHHHHHHHHHHhhc
Q 034645           27 AKPCMKEMITFLNCM----SLNQ-MNSEKCARQKELLSACMDAQT   66 (88)
Q Consensus        27 ~~pC~~eMs~lL~Cw----asng-~~~~~Ca~~~~~L~~Cm~~~~   66 (88)
                      ..+|-....+...|+    ++++ -....|...-..|+.||+..+
T Consensus        11 gG~Cke~F~awe~C~~ea~~~~~~d~v~kC~e~~~~L~kCM~ahs   55 (76)
T PF07802_consen   11 GGGCKESFTAWEDCVDEAEKNKEEDFVEKCFEATAALRKCMEAHS   55 (76)
T ss_pred             CCChhHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHHHhch
Confidence            468999999999999    3333 566899999999999999764

It has 4 highly conserved cysteine residues, suggesting that it can bind zinc ions. Moreover, it is found repeated in some members of this family (such as Q9LMF3 from SWISSPROT); this may indicate that these domains are able to interact with one another, raising the possibility that this domain mediates heterodimerisation.

>PF08583 Cmc1: Cytochrome c oxidase biogenesis protein Cmc1 like; InterPro: IPR013892 Cmc1 is a metallo-chaperone like protein which is known to localise to the inner mitochondrial membrane in Saccharomyces cerevisiae

Probab=87.60  E-value=1.2  Score=26.61  Aligned_cols=39  Identities=23%  Similarity=0.576  Sum_probs=34.9

Q ss_pred             CChHHHHHHHHHHHhcCCC-ChHHHHHHHHHHHHHHHhhc
Q 034645           28 KPCMKEMITFLNCMSLNQM-NSEKCARQKELLSACMDAQT   66 (88)
Q Consensus        28 ~pC~~eMs~lL~Cwasng~-~~~~Ca~~~~~L~~Cm~~~~   66 (88)
                      ..|..++..|..|-+..++ ....|..+..+|+.|+....
T Consensus        11 ~~C~~~i~~~~~C~~~~~~~~~~~C~~~~~~m~~Cl~~~~   50 (69)
T PF08583_consen   11 KKCADEIEAFAECHKDRTFKFVGKCREEKKAMNECLKEER   50 (69)
T ss_pred             HHhHHHHHHHHHHHhcchHHHHHhhhHHHHHHHHHHHHHH
Confidence            6899999999999999664 66999999999999998775

It is essential for full expression of cytochrome c oxidase and respiration []. Cmc1 contains two Cx9C motifs and is able to bind copper(I). Cmc1 is thought to play a role in mitochondrial copper trafficking and transfer to cytochrome c oxidase.

>KOG4090 consensus Uncharacterized conserved protein [Function unknown]

Probab=87.59  E-value=1.3  Score=32.25  Aligned_cols=39  Identities=26%  Similarity=0.618  Sum_probs=36.0

Q ss_pred             CCChHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHhh
Q 034645           27 AKPCMKEMITFLNCMSLNQMNSEKCARQKELLSACMDAQ   65 (88)
Q Consensus        27 ~~pC~~eMs~lL~Cwasng~~~~~Ca~~~~~L~~Cm~~~   65 (88)
                      ..+|.-|.-.||.|....|-|.+.|.-..+.|+.|-...
T Consensus       115 ~~~C~~e~kqF~dCa~~~~~d~slC~~f~e~Lk~Ck~~~  153 (157)
T KOG4090|consen  115 QQPCFIEIKQFLDCAQNQGSDISLCEGYNEMLKQCKKNS  153 (157)
T ss_pred             cCchHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHh
Confidence            567999999999999999999999999999999997654

>KOG4149 consensus Uncharacterized conserved protein [Function unknown]

Probab=85.17  E-value=1.7  Score=30.75  Aligned_cols=40  Identities=23%  Similarity=0.552  Sum_probs=35.4

Q ss_pred             CCCChHHHHHHHHHHHhcCC--CChHHHHHHHHHHHHHHHhh
Q 034645           26 IAKPCMKEMITFLNCMSLNQ--MNSEKCARQKELLSACMDAQ   65 (88)
Q Consensus        26 ~~~pC~~eMs~lL~Cwasng--~~~~~Ca~~~~~L~~Cm~~~   65 (88)
                      ...||..|+-..++|+..++  --...|.++-.++..||.+.
T Consensus        66 ~a~pCG~eFreA~sCf~~s~~e~kg~dC~~qf~a~~~C~qk~  107 (129)
T KOG4149|consen   66 VAGPCGEEFREAFSCFKYSDTEPKGGDCVKQFVAMQECMQKY  107 (129)
T ss_pred             ccCccHHHHHHHHhhccccCCCcCccchHHHHHHHHHHHHhC
Confidence            56799999999999999998  45678999999999999844

>KOG4138 consensus Unchracterized conserved protein (estrogen up-regulated protein E2IG2 in human) [General function prediction only]

Probab=81.43  E-value=2.7  Score=28.26  Aligned_cols=41  Identities=22%  Similarity=0.545  Sum_probs=35.1

Q ss_pred             CCChHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHhhcCC
Q 034645           27 AKPCMKEMITFLNCMSLNQMNSEKCARQKELLSACMDAQTNK   68 (88)
Q Consensus        27 ~~pC~~eMs~lL~Cwasng~~~~~Ca~~~~~L~~Cm~~~~~~   68 (88)
                      ..-|..|=.+|=-|.|..+ +=-+|..+.++|+.|++++..+
T Consensus        40 k~GC~~ehlalq~C~a~t~-DWRqC~~qm~~FrkCwek~~g~   80 (96)
T KOG4138|consen   40 KSGCAAEHLALQECMAQTQ-DWRQCQPQMQAFRKCWEKQQGR   80 (96)
T ss_pred             ccchHHHHHHHHHHHHhhc-cHHHHHHHHHHHHHHHHHHcCC
Confidence            4579999999999999876 4579999999999999996543

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	88
1ei0_A	38	P8MTCP1; helix-turn-helix, disulfide bridges, cell	97.55
1hp8_A	68	HU-P8; leukemia, cysteine motif; NMR {Homo sapiens	97.37
2lqt_A	85	Coiled-coil-helix-coiled-coil-helix domain-contai	93.84
2lql_A	113	Coiled-coil-helix-coiled-coil-helix domain-contai	93.36
2k3j_A	146	Mitochondrial intermembrane space import and assem	88.09
2zxt_A	465	Maltose-binding periplasmic protein, linker, MITO	84.57

>1ei0_A P8MTCP1; helix-turn-helix, disulfide bridges, cell cycle; NMR {Synthetic} SCOP: j.77.1.1

Probab=97.55  E-value=0.00013  Score=40.52  Aligned_cols=36  Identities=25%  Similarity=0.556  Sum_probs=34.0

Q ss_pred             CChHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHH
Q 034645           28 KPCMKEMITFLNCMSLNQMNSEKCARQKELLSACMD   63 (88)
Q Consensus        28 ~pC~~eMs~lL~Cwasng~~~~~Ca~~~~~L~~Cm~   63 (88)
                      .||-.+.=++..|+..|+|+.++|....++|+.|=.
T Consensus         1 dpC~~~a~a~q~CL~~n~~d~skCq~~id~l~~Cc~   36 (38)
T 1ei0_A            1 DPCQKQAAEIQKCLQANSYLESKCQAVIQELKKCAA   36 (38)
T ss_dssp             CCSHHHHHHHHHHHHHTTTCGGGTHHHHHHHHHHHH
T ss_pred             CchHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHHh
Confidence            489999999999999999999999999999999965

>1hp8_A HU-P8; leukemia, cysteine motif; NMR {Homo sapiens} SCOP: a.17.1.1 PDB: 2hp8_A

Probab=97.37  E-value=0.00035  Score=43.44  Aligned_cols=40  Identities=23%  Similarity=0.466  Sum_probs=36.9

Q ss_pred             CCCChHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHhh
Q 034645           26 IAKPCMKEMITFLNCMSLNQMNSEKCARQKELLSACMDAQ   65 (88)
Q Consensus        26 ~~~pC~~eMs~lL~Cwasng~~~~~Ca~~~~~L~~Cm~~~   65 (88)
                      +..||-.+.=++..|+..|+|+.++|..+.++|+.|-...
T Consensus         3 ~~dPC~~~AcaiQ~CL~~N~yd~skCq~~id~L~eCc~~~   42 (68)
T 1hp8_A            3 QKDPCQKQACEIQKCLQANSYMESKCQAVIQELRKCCAQY   42 (68)
T ss_dssp             SCCTTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTTS
T ss_pred             CCCchHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHH
Confidence            3589999999999999999999999999999999997644

>2lqt_A Coiled-coil-helix-coiled-coil-helix domain-contai protein 7; CHCH domain, mitochondrial import, alpha-hairpin, MIA40-DEPE disulfide relay system; NMR {Homo sapiens}

Probab=93.84  E-value=0.089  Score=33.80  Aligned_cols=39  Identities=21%  Similarity=0.406  Sum_probs=35.3

Q ss_pred             CCCChHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHh
Q 034645           26 IAKPCMKEMITFLNCMSLNQMNSEKCARQKELLSACMDA   64 (88)
Q Consensus        26 ~~~pC~~eMs~lL~Cwasng~~~~~Ca~~~~~L~~Cm~~   64 (88)
                      ..+||..|=..-+.|+-.|+|+-+.|...-+.-++|-..
T Consensus        12 d~nPC~~e~~~S~kCL~~n~yDr~~C~~yF~~Yk~CKk~   50 (85)
T 2lqt_A           12 DINPCLSESDASTRCLDENNYDRERCSTYFLRYKNCRRF   50 (85)
T ss_dssp             --CCCHHHHHHHHHHHHHTTTCTTTTHHHHHHHHHHHHH
T ss_pred             CCCccHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHH
Confidence            359999999999999999999999999999999999654

>2lql_A Coiled-coil-helix-coiled-coil-helix domain-contai protein 5; CHCH domain, mitochondrial import, MIA40-dependent disulfide system; NMR {Homo sapiens}

Probab=93.36  E-value=0.04  Score=36.55  Aligned_cols=41  Identities=17%  Similarity=0.460  Sum_probs=36.2

Q ss_pred             CCChHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHhhcC
Q 034645           27 AKPCMKEMITFLNCMSLNQMNSEKCARQKELLSACMDAQTN   67 (88)
Q Consensus        27 ~~pC~~eMs~lL~Cwasng~~~~~Ca~~~~~L~~Cm~~~~~   67 (88)
                      ...|..+|.++-.|+-.|..+...|.++.+.|..|.++-..
T Consensus        58 ~~~C~~ef~~y~~CL~~n~~~~~~Cr~~~~~f~~Cae~v~~   98 (113)
T 2lql_A           58 RQACAQPFEAFEECLRQNEAAVGNCAEHMRRFLQCAEQVQP   98 (113)
T ss_dssp             HHHTHHHHHHHHHHHHHCTTCTTTCCSHHHHHHHHHTTC--
T ss_pred             HHHhHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHhcc
Confidence            45799999999999999999999999999999999976654

>2k3j_A Mitochondrial intermembrane space import and assembly protein 40; alpha-hairpin fold, coiled coil-helix-coiled coil-helix domain; NMR {Homo sapiens} PDB: 2l0y_A

Probab=88.09  E-value=0.86  Score=31.77  Aligned_cols=42  Identities=17%  Similarity=0.548  Sum_probs=34.6

Q ss_pred             CCCChHHHHHHHHHHHhcC--CCChHHHHHHHHHHHHHHHhhcC
Q 034645           26 IAKPCMKEMITFLNCMSLN--QMNSEKCARQKELLSACMDAQTN   67 (88)
Q Consensus        26 ~~~pC~~eMs~lL~Cwasn--g~~~~~Ca~~~~~L~~Cm~~~~~   67 (88)
                      ...||..++-..+.||..+  .--.+.|.++-.+|+.||...+-
T Consensus        64 a~GPCG~eFreAfsCF~~S~~e~Kg~dC~e~F~~mq~Cm~~~P~  107 (146)
T 2k3j_A           64 ASGPCGEQFKSAFSCFHYSTEEIKGSDCVDQFRAMQECMQKYPD  107 (146)
T ss_dssp             TSSSTHHHHHHHHHHHHHHCCSSTTTTTHHHHHHHHHHHHHCSS
T ss_pred             CCCCcHHHHHHHHHhhccCccccccchHHHHHHHHHHHHHHChH
Confidence            3568999999999999443  35678999999999999988753

>2zxt_A Maltose-binding periplasmic protein, linker, MITO intermembrane space import AND...; disulfide bond, alpha helix, fusion, sugar transport; HET: MAL; 3.00A {Escherichia coli}

Probab=84.57  E-value=1.4  Score=33.43  Aligned_cols=42  Identities=14%  Similarity=0.437  Sum_probs=35.8

Q ss_pred             CCCChHHHHHHHHHHHhcCC--CChHHHHHHHHHHHHHHHhhcC
Q 034645           26 IAKPCMKEMITFLNCMSLNQ--MNSEKCARQKELLSACMDAQTN   67 (88)
Q Consensus        26 ~~~pC~~eMs~lL~Cwasng--~~~~~Ca~~~~~L~~Cm~~~~~   67 (88)
                      ...||-.++-.-+.|+-.+.  .-.+.|.++-..|+.||...+.
T Consensus       403 ~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~  446 (465)
T 2zxt_A          403 AHGPCGEEFKSAFSCFVYSEAEPKGIDCVEKFQHMQDCFRKYPE  446 (465)
T ss_dssp             TSSTTHHHHHHHHHHHHHCCSSSTTGGGHHHHHHHHHHHTTCTT
T ss_pred             CCCCchHHHHHHHHhhhcCccccccchHHHHHHHHHHHHHHCHH
Confidence            35599999999999998665  5667999999999999987753

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	88
d2hp8a_	68	p8-MTCP1 {Human (Homo sapiens) [TaxId: 9606]}	96.75

>d2hp8a_ a.17.1.1 (A:) p8-MTCP1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: Cysteine alpha-hairpin motif
superfamily: Cysteine alpha-hairpin motif
family: p8-MTCP1
domain: p8-MTCP1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.75  E-value=0.00097  Score=40.02  Aligned_cols=39  Identities=23%  Similarity=0.494  Sum_probs=36.3

Q ss_pred             CCChHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHhh
Q 034645           27 AKPCMKEMITFLNCMSLNQMNSEKCARQKELLSACMDAQ   65 (88)
Q Consensus        27 ~~pC~~eMs~lL~Cwasng~~~~~Ca~~~~~L~~Cm~~~   65 (88)
                      ..||-.+--.+=.|+..|+|+.++|.+++++|+.|=...
T Consensus         4 kdPCk~~AC~IQ~CLq~N~Y~EskC~~~i~~L~~CC~~f   42 (68)
T d2hp8a_           4 KDPCQKQACEIQKCLQANSYMESKCQAVIQELRKCCAQY   42 (68)
T ss_dssp             CCTTHHHHHHHHHHHHHTTTCTTTTHHHHHHHHHHHTTS
T ss_pred             CCCchHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHh
Confidence            568999999999999999999999999999999998664