Citrus Sinensis ID: 034648

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------
Protein Sequence
MAYLLKTSIASHLRSHTQEKREDALSRRGYHVELGPREKALLADDPVLKRFKSHKKSVWRLKRMGDVLTIVVVAGKTGDFGIRGVKWL
Secondary Structure (PSIPRED)
ccccccHHHHHHHHcccccccccccccccccccccccHHcccccccHHHHHHHHHHHHHHHHHHccEEEEEEEEcccEEEEEEEEccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHHHcccccccccccccccccccccccHHHHHHHHHcHHHHHHHHHHHHHHHHHHHccEEEEEEEHHcHHHHHHHEHEcc
Coil and Loop (DISEMBL)
MAYLLKTSIASHLRSHTQEKREDAlsrrgyhvelgprekalladdpvlkRFKSHKKSVWRLKRMGDVLTIVVVAGktgdfgirgvkwl
Flexible Loop (DISEMBL)
MAYLLKTSiashlrshtqekredalsrrgyhvelgprekalladdpvlkrfkshkksvwrlkrmgdvLTIVVvagktgdfgirgvkwl
Low Complexity Region (SEG)
MAYLLKTSIASHLRSHTQEKREDALSRRGYHVELGPREKALLADDPVLKRFKSHKKSVWRLKRMGDVLTIVVVAGKTGDFGIRGVKWL
Disordered region (IsUnstruct)
***************************************ALLADDPVLKRFKSHKKSVWRLKRMGDVLTIVVVAGKTGDFGIRGVKW*
Disordered Region (DISOPRED)
*A******************************ELGPREKALLADDPVLKRFKSH*K**WRLKRMGDVLTIVVVAGKTGDFGIRGVKWL
Disordered Region (DISEMBL)
MAYLLKTSIASH*************SRRGYHVELGPREKALLADDPVLKRFKSHKKSVWRLKRMGDVLTIVVVAGKTGDFGIRGVKWL
Disordered Region (DISPRO)
*****************************YHVELGPREKALLADDPVLKRFKSHKKSVWRLKRMGDVLTIVVVAGKTGDFGIRGVKWL
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MAYLLKTSIASHLRSHTQEKREDALSRRGYHVELGPREKALLADDPVLKRFKSHKKSVWRLKRMGDVLTIVVVAGKTGDFGIRGVKWL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	88
359491609	102	PREDICTED: uncharacterized protein LOC10	0.954	0.823	0.670	1e-23
118482384	100	unknown [Populus trichocarpa] gi|1184896	0.965	0.85	0.632	3e-22
224119246	117	predicted protein [Populus trichocarpa]	0.965	0.726	0.632	3e-22
297815972	97	hypothetical protein ARALYDRAFT_906015 [	0.840	0.762	0.727	2e-21
224133448	102	predicted protein [Populus trichocarpa]	0.954	0.823	0.655	4e-21
449440710	101	PREDICTED: uncharacterized protein LOC10	0.840	0.732	0.671	9e-20
449440712	98	PREDICTED: uncharacterized protein LOC10	0.840	0.755	0.671	1e-19
255540773	101	conserved hypothetical protein [Ricinus	0.965	0.841	0.613	2e-19
351721235	95	uncharacterized protein LOC100527646 [Gl	0.954	0.884	0.568	6e-17
18424606	99	uncharacterized protein [Arabidopsis tha	0.965	0.858	0.551	3e-16

>gi|359491609|ref|XP_002283556.2| PREDICTED: uncharacterized protein LOC100255301 [Vitis vinifera] gi|297733832|emb|CBI15079.3| unnamed protein product [Vitis vinifera]

 Score =  113 bits (282), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 59/88 (67%), Positives = 71/88 (80%), Gaps = 4/88 (4%)

Query: 1  MAYLLKTSIA-SHLRSHTQEKREDA--LSRRGYHVELGPREKALLADDPVLKRFKSHKKS 57
          MA+LL  + A SH RSH+Q K ED+  LSRRG+HVE GPREKALLAD+P LKRFKSHK++
Sbjct: 1  MAFLLNKATALSHFRSHSQ-KTEDSFSLSRRGFHVEPGPREKALLADNPSLKRFKSHKRN 59

Query: 58 VWRLKRMGDVLTIVVVAGKTGDFGIRGV 85
          VWRLKR+GDVLTIVVVAG   +  ++ V
Sbjct: 60 VWRLKRVGDVLTIVVVAGCCYEIYVKAV 87

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|118482384|gb|ABK93115.1| unknown [Populus trichocarpa] gi|118489648|gb|ABK96625.1| unknown [Populus trichocarpa x Populus deltoides]

 Score =  108 bits (271), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 55/87 (63%), Positives = 67/87 (77%), Gaps = 2/87 (2%)

Query: 1  MAYLLK--TSIASHLRSHTQEKREDALSRRGYHVELGPREKALLADDPVLKRFKSHKKSV 58
          M  LLK  ++I SH RS +Q +   +LSRRG+HVE GPRE+ALLA+DP LKRFKSHKKSV
Sbjct: 1  MGLLLKNYSTITSHYRSQSQTQGAFSLSRRGFHVEPGPREQALLAEDPSLKRFKSHKKSV 60

Query: 59 WRLKRMGDVLTIVVVAGKTGDFGIRGV 85
          WRLKR GDVLT+VVVAG   +  ++ V
Sbjct: 61 WRLKRFGDVLTLVVVAGCCYEIYVKTV 87

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224119246|ref|XP_002318023.1| predicted protein [Populus trichocarpa] gi|222858696|gb|EEE96243.1| predicted protein [Populus trichocarpa]

 Score =  108 bits (271), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 55/87 (63%), Positives = 67/87 (77%), Gaps = 2/87 (2%)

Query: 1   MAYLLK--TSIASHLRSHTQEKREDALSRRGYHVELGPREKALLADDPVLKRFKSHKKSV 58
           M  LLK  ++I SH RS +Q +   +LSRRG+HVE GPRE+ALLA+DP LKRFKSHKKSV
Sbjct: 18  MGLLLKNYSTITSHYRSQSQTQGAFSLSRRGFHVEPGPREQALLAEDPSLKRFKSHKKSV 77

Query: 59  WRLKRMGDVLTIVVVAGKTGDFGIRGV 85
           WRLKR GDVLT+VVVAG   +  ++ V
Sbjct: 78  WRLKRFGDVLTLVVVAGCCYEIYVKTV 104

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297815972|ref|XP_002875869.1| hypothetical protein ARALYDRAFT_906015 [Arabidopsis lyrata subsp. lyrata] gi|297321707|gb|EFH52128.1| hypothetical protein ARALYDRAFT_906015 [Arabidopsis lyrata subsp. lyrata]

 Score =  105 bits (263), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 56/77 (72%), Positives = 65/77 (84%), Gaps = 3/77 (3%)

Query: 1  MAYLLKTSIASHLRSHTQEKREDAL--SRRGYHVELGPREKALLADDPVLKRFKSHKKSV 58
          MA+LL TSI+SHLRS +Q K + AL  SRRG+HVELG REKALLA+D  L+RFKSHKK V
Sbjct: 1  MAFLLNTSISSHLRSCSQ-KTDGALAQSRRGFHVELGAREKALLAEDASLRRFKSHKKGV 59

Query: 59 WRLKRMGDVLTIVVVAG 75
           RLKR+GDVLT+VVVAG
Sbjct: 60 HRLKRIGDVLTVVVVAG 76

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224133448|ref|XP_002321570.1| predicted protein [Populus trichocarpa] gi|222868566|gb|EEF05697.1| predicted protein [Populus trichocarpa]

 Score =  105 bits (261), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 59/90 (65%), Positives = 69/90 (76%), Gaps = 6/90 (6%)

Query: 1  MAYLLKTSIAS---HLRSHTQEKREDALS--RRGYHVELGPREKALLADDPVLKRFKSHK 55
          MA+LLK   +S   HLRS +Q K +DALS  RRG+HVE GPREKALLA+DP LK FKSHK
Sbjct: 1  MAFLLKNCSSSISSHLRSKSQ-KTQDALSISRRGFHVEPGPREKALLAEDPALKWFKSHK 59

Query: 56 KSVWRLKRMGDVLTIVVVAGKTGDFGIRGV 85
          KSVWRLKR GDVLT+VVVAG   +  ++ V
Sbjct: 60 KSVWRLKRAGDVLTLVVVAGCCYEIYVKAV 89

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449440710|ref|XP_004138127.1| PREDICTED: uncharacterized protein LOC101212374 isoform 1 [Cucumis sativus]

 Score =  100 bits (250), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 51/76 (67%), Positives = 63/76 (82%), Gaps = 2/76 (2%)

Query: 1  MAYLL-KTSIASHLRSHTQEKREDALSRRGYHVELGPREKALLADDPVLKRFKSHKKSVW 59
          MA+ L K+++ASH RS +Q     +LSRRG+HVE G REKALLA+DP L+RF+SHKK+V 
Sbjct: 1  MAFFLNKSTLASHFRSQSQVD-PSSLSRRGFHVEPGTREKALLAEDPCLRRFRSHKKAVS 59

Query: 60 RLKRMGDVLTIVVVAG 75
          RLKR+GDVLTIVVVAG
Sbjct: 60 RLKRVGDVLTIVVVAG 75

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449440712|ref|XP_004138128.1| PREDICTED: uncharacterized protein LOC101212374 isoform 2 [Cucumis sativus]

 Score =  100 bits (250), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 51/76 (67%), Positives = 63/76 (82%), Gaps = 2/76 (2%)

Query: 1  MAYLL-KTSIASHLRSHTQEKREDALSRRGYHVELGPREKALLADDPVLKRFKSHKKSVW 59
          MA+ L K+++ASH RS +Q     +LSRRG+HVE G REKALLA+DP L+RF+SHKK+V 
Sbjct: 1  MAFFLNKSTLASHFRSQSQVD-PSSLSRRGFHVEPGTREKALLAEDPCLRRFRSHKKAVS 59

Query: 60 RLKRMGDVLTIVVVAG 75
          RLKR+GDVLTIVVVAG
Sbjct: 60 RLKRVGDVLTIVVVAG 75

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255540773|ref|XP_002511451.1| conserved hypothetical protein [Ricinus communis] gi|223550566|gb|EEF52053.1| conserved hypothetical protein [Ricinus communis]

 Score = 99.4 bits (246), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 54/88 (61%), Positives = 64/88 (72%), Gaps = 3/88 (3%)

Query: 1  MAYLLKTS-IASHLRSHTQEKREDALSR--RGYHVELGPREKALLADDPVLKRFKSHKKS 57
          MA+LLK+S I+S  RSH+Q   +  LS   RG+HVE G REKALLA+DP LKRFKSHK S
Sbjct: 1  MAFLLKSSMISSRFRSHSQNTEKGLLSNSSRGFHVEPGTREKALLAEDPALKRFKSHKSS 60

Query: 58 VWRLKRMGDVLTIVVVAGKTGDFGIRGV 85
          V  LKR+GDVLTIVVVAG   +  +R  
Sbjct: 61 VRTLKRVGDVLTIVVVAGCCYEIYVRAT 88

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351721235|ref|NP_001235411.1| uncharacterized protein LOC100527646 [Glycine max] gi|255632848|gb|ACU16777.1| unknown [Glycine max]

 Score = 91.3 bits (225), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 50/88 (56%), Positives = 65/88 (73%), Gaps = 4/88 (4%)

Query: 1  MAYLL-KTSIASHLRSHTQEKRED--ALSRRGYHVELGPREKALLADDPVLKRFKSHKKS 57
          MA+ L +TSIASH RSH+Q K ED  +  RR +HVE G REKALLA+D  LK FKS+KKS
Sbjct: 1  MAFFLNQTSIASHFRSHSQ-KTEDLASFPRRRFHVEPGAREKALLAEDATLKPFKSYKKS 59

Query: 58 VWRLKRMGDVLTIVVVAGKTGDFGIRGV 85
          V +L+++G+ LTIVVVAG   +  +R +
Sbjct: 60 VKKLRKIGNALTIVVVAGCCYEVYVRAL 87

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18424606|ref|NP_568957.1| uncharacterized protein [Arabidopsis thaliana] gi|21592610|gb|AAM64559.1| unknown [Arabidopsis thaliana] gi|332010243|gb|AED97626.1| uncharacterized protein [Arabidopsis thaliana]

 Score = 89.4 bits (220), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 48/87 (55%), Positives = 61/87 (70%), Gaps = 2/87 (2%)

Query: 1  MAYLLKTSIASHLRSHTQEKREDALS--RRGYHVELGPREKALLADDPVLKRFKSHKKSV 58
          MA+LL  +  S     +  +  DALS  RRG+H+E G REKALLA+D  LKRFKSHKKSV
Sbjct: 1  MAFLLNNASISSHLRSSSSQTGDALSISRRGFHIEPGTREKALLAEDSALKRFKSHKKSV 60

Query: 59 WRLKRMGDVLTIVVVAGKTGDFGIRGV 85
           +LKR+GDVLT+VVVAG   +  ++ V
Sbjct: 61 HKLKRIGDVLTVVVVAGCCYEIYVKAV 87

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	88
TAIR|locus:505006388	93	SDH7 "AT3G47833" [Arabidopsis	0.840	0.795	0.727	3.4e-22
TAIR|locus:505006710	100	SDH7 "AT5G62575" [Arabidopsis	0.965	0.85	0.625	1.5e-21

TAIR|locus:505006388 SDH7 "AT3G47833" [Arabidopsis thaliana (taxid:3702)]

 Score = 258 (95.9 bits), Expect = 3.4e-22, P = 3.4e-22
 Identities = 56/77 (72%), Positives = 65/77 (84%)

Query:     1 MAYLLKTSIASHLRSHTQEKREDAL--SRRGYHVELGPREKALLADDPVLKRFKSHKKSV 58
             MA+LL TSI+SHLRS +Q K + AL  SRRG+HVELG REKALLA+D  L+RFKSHKK V
Sbjct:     1 MAFLLNTSISSHLRSSSQ-KTDGALAQSRRGFHVELGAREKALLAEDASLRRFKSHKKGV 59

Query:    59 WRLKRMGDVLTIVVVAG 75
              RLKR+GDVLT+VVVAG
Sbjct:    60 HRLKRIGDVLTVVVVAG 76

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0005749 "mitochondrial respiratory chain complex II" evidence=IDA

GO:0048046 "apoplast" evidence=IDA

GO:0005739 "mitochondrion" evidence=IDA

TAIR|locus:505006710 SDH7 "AT5G62575" [Arabidopsis thaliana (taxid:3702)]

 Score = 252 (93.8 bits), Expect = 1.5e-21, P = 1.5e-21
 Identities = 55/88 (62%), Positives = 68/88 (77%)

Query:     1 MAYLLKT-SIASHLRSHTQEKREDALS--RRGYHVELGPREKALLADDPVLKRFKSHKKS 57
             MA+LL   SI+SHLRS + +K  DALS  RRG+H+E G REKALLA+D  LKRFKSHKKS
Sbjct:     1 MAFLLNNASISSHLRSSSSQKTGDALSISRRGFHIEPGTREKALLAEDSALKRFKSHKKS 60

Query:    58 VWRLKRMGDVLTIVVVAGKTGDFGIRGV 85
             V +LKR+GDVLT+VVVAG   +  ++ V
Sbjct:    61 VHKLKRIGDVLTVVVVAGCCYEIYVKAV 88


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.321   0.136   0.405    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0       88        88   0.00091  102 3  11 22  0.44    29
                                                     29  0.49    30


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  2
  No. of states in DFA:  546 (58 KB)
  Total size of DFA:  105 KB (2072 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  11.36u 0.10s 11.46t   Elapsed:  00:00:00
  Total cpu time:  11.36u 0.10s 11.46t   Elapsed:  00:00:00
  Start:  Thu May  9 22:22:59 2013   End:  Thu May  9 22:22:59 2013

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

GO:0005739 "mitochondrion" evidence=IDA

GO:0005749 "mitochondrial respiratory chain complex II" evidence=IDA

GO:0006661 "phosphatidylinositol biosynthetic process" evidence=RCA

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Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00016151001 SubName- Full=Chromosome chr17 scaffold_12, whole genome shotgun sequence; (102 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

No hit with probability above 80.00

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00