Citrus Sinensis ID: 034678

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80-------
Protein Sequence
MNAKGKAWIVAAIGAVEALKDQGFARWNYPLRSLKQHAETNLRSLVQANKLSSSSAMALSKVKDEKKIKESEESLRKVMYLSCWGPN
Secondary Structure (PSIPRED)
cccccHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHccccHHHHHHHHHcccEEEEEccccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHEEEEEEccccc
Coil and Loop (DISEMBL)
MNAKGKAWIVAAIGAVEALKDQgfarwnyplrslkQHAETNLRSLVQAnklssssamALSKVKDEKKIKESEESLRKVMYLSCWGPN
Flexible Loop (DISEMBL)
MNAKGKAWIVAAIGAVEALKDQGFARWNYPLRSLKQHAETNLRSLVqanklssssamalskvkdekkikeseeslrkvmylscwgpn
Low Complexity Region (SEG)
MNAKGKAWIVAAIGAVEALKDQGFARWNYPLRSLKQHAETNLRSLVQANklssssamalskvkdekkikeseeslrkVMYLSCWGPN
Disordered region (IsUnstruct)
*****KAWIVAAIGAVEALKDQGFARWNYPLRSLK******************************************VMYLSCW***
Disordered Region (DISOPRED)
****GKAWIVAAIGAVEALKDQGFARWNYPLRSL*******************************************VMYLSCWGPN
Disordered Region (DISEMBL)
MNAKGKAWIVAAIGAVEALKDQGFARWNYPLRSLKQHAETNLRSLVQANKL*********************ESLRKVMYLSCWGPN
Disordered Region (DISPRO)
*****KAWIVAAIGAVEALKDQGFARWNYPLRSLKQHAETNLRSLV*************************EESLRKVMYLSCWGPN
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
ooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MNAKGKAWIVAAIGAVEALKDQGFARWNYPLRSLKQHAETNLRSLVQANKLSSSSAMALSKVKDEKKIKESEESLRKVMYLSCWGPN
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	87
225447649	88	PREDICTED: uncharacterized protein LOC10	0.988	0.977	0.730	9e-25
225447653	88	PREDICTED: uncharacterized protein LOC10	1.0	0.988	0.704	2e-24
225447651	88	PREDICTED: uncharacterized protein LOC10	1.0	0.988	0.704	2e-24
225447665	87	PREDICTED: uncharacterized protein LOC10	0.988	0.988	0.715	9e-24
225447663	88	PREDICTED: uncharacterized protein LOC10	0.988	0.977	0.719	1e-23
224145559	88	predicted protein [Populus trichocarpa]	1.0	0.988	0.670	2e-23
225447667	88	PREDICTED: uncharacterized protein LOC10	0.988	0.977	0.696	3e-23
225447657	88	PREDICTED: uncharacterized protein LOC10	1.0	0.988	0.693	6e-23
225447661	88	PREDICTED: uncharacterized protein LOC10	0.988	0.977	0.696	2e-22
225447659	88	PREDICTED: uncharacterized protein LOC10	1.0	0.988	0.670	2e-22

>gi|225447649|ref|XP_002274919.1| PREDICTED: uncharacterized protein LOC100261290 [Vitis vinifera]

 Score =  117 bits (293), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 65/89 (73%), Positives = 74/89 (83%), Gaps = 3/89 (3%)

Query: 1  MNAKGKAWIVAA-IGAVEALKDQGFARWNYPLRSLKQHAETNLRSLVQANKLSSSSAMAL 59
          M+  GKAWIVAA +GAVEALKDQGF RWNY LRS+ QHA+TNLRS  QA KLSSSS+  +
Sbjct: 1  MSHMGKAWIVAASVGAVEALKDQGFCRWNYTLRSIHQHAKTNLRSFTQAKKLSSSSSAMV 60

Query: 60 S-KVKDEKKIKESEESLRKVMYLSCWGPN 87
          S +V+DEK  K+SEESLR VMYLSCWGPN
Sbjct: 61 SSRVRDEK-AKQSEESLRTVMYLSCWGPN 88

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225447653|ref|XP_002275082.1| PREDICTED: uncharacterized protein LOC100251039 [Vitis vinifera] gi|225447655|ref|XP_002275274.1| PREDICTED: uncharacterized protein LOC100245897 [Vitis vinifera]

 Score =  116 bits (290), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 62/88 (70%), Positives = 71/88 (80%), Gaps = 1/88 (1%)

Query: 1  MNAKGKAWIVAA-IGAVEALKDQGFARWNYPLRSLKQHAETNLRSLVQANKLSSSSAMAL 59
          M+  GKAW+VAA +GAVEALKDQGF RWNY LRS+ QHA+TNLRS  QA KLSSSS+  +
Sbjct: 1  MSHMGKAWLVAASVGAVEALKDQGFCRWNYTLRSIHQHAKTNLRSFAQAKKLSSSSSAMV 60

Query: 60 SKVKDEKKIKESEESLRKVMYLSCWGPN 87
          S    E+K K+SEESLR VMYLSCWGPN
Sbjct: 61 SSRVREEKAKQSEESLRTVMYLSCWGPN 88

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225447651|ref|XP_002274988.1| PREDICTED: uncharacterized protein LOC100256196 [Vitis vinifera]

 Score =  115 bits (289), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 62/88 (70%), Positives = 71/88 (80%), Gaps = 1/88 (1%)

Query: 1  MNAKGKAWIVAA-IGAVEALKDQGFARWNYPLRSLKQHAETNLRSLVQANKLSSSSAMAL 59
          M+  GKAW+VAA +GAVEALKDQGF RWNY LRS+ QHA+TNLRS  QA KLSSSS+  +
Sbjct: 1  MSHVGKAWLVAASVGAVEALKDQGFCRWNYTLRSIHQHAKTNLRSFAQAKKLSSSSSAMV 60

Query: 60 SKVKDEKKIKESEESLRKVMYLSCWGPN 87
          S    E+K K+SEESLR VMYLSCWGPN
Sbjct: 61 SSRVREEKAKQSEESLRTVMYLSCWGPN 88

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225447665|ref|XP_002275507.1| PREDICTED: uncharacterized protein LOC100247673 [Vitis vinifera]

 Score =  114 bits (284), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 63/88 (71%), Positives = 71/88 (80%), Gaps = 2/88 (2%)

Query: 1  MNAKGKAWIVAA-IGAVEALKDQGFARWNYPLRSLKQHAETNLRSLVQANKLSSSSAMAL 59
          M+  GKAWIVAA +GAVEALKDQGF RWNY +RS+ QHA  +LRS  Q  KLSSSSAM  
Sbjct: 1  MSHMGKAWIVAASVGAVEALKDQGFCRWNYTMRSIHQHARNSLRSFSQVKKLSSSSAMVS 60

Query: 60 SKVKDEKKIKESEESLRKVMYLSCWGPN 87
          S+V+DEK  K+SEESLR VMYLSCWGPN
Sbjct: 61 SRVRDEKA-KQSEESLRTVMYLSCWGPN 87

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225447663|ref|XP_002275464.1| PREDICTED: uncharacterized protein LOC100252779 [Vitis vinifera]

 Score =  113 bits (283), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 64/89 (71%), Positives = 73/89 (82%), Gaps = 3/89 (3%)

Query: 1  MNAKGKAWIVAA-IGAVEALKDQGFARWNYPLRSLKQHAETNLRSLVQANKLSSSSAMAL 59
          M+  GKAWIVAA +GAVEALKDQGF RWNY LRS+ QHA+ NLRS  QA KLSSSS+  +
Sbjct: 1  MSHMGKAWIVAASVGAVEALKDQGFCRWNYTLRSIHQHAKNNLRSFSQAKKLSSSSSAMV 60

Query: 60 S-KVKDEKKIKESEESLRKVMYLSCWGPN 87
          S +V+DEK  K+SEESLR VMYLSCWGPN
Sbjct: 61 SSRVRDEK-AKQSEESLRTVMYLSCWGPN 88

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224145559|ref|XP_002325686.1| predicted protein [Populus trichocarpa] gi|222862561|gb|EEF00068.1| predicted protein [Populus trichocarpa]

 Score =  112 bits (281), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 59/88 (67%), Positives = 70/88 (79%), Gaps = 1/88 (1%)

Query: 1  MNAKGKAWIVAA-IGAVEALKDQGFARWNYPLRSLKQHAETNLRSLVQANKLSSSSAMAL 59
          M++  KAW+VAA IG VEALKDQGF RWNY LRSL  HA+ ++RS  QA KLSSSS+  +
Sbjct: 1  MSSASKAWLVAAAIGGVEALKDQGFCRWNYTLRSLHHHAKNHVRSASQAKKLSSSSSAMI 60

Query: 60 SKVKDEKKIKESEESLRKVMYLSCWGPN 87
          S +  E+K K+SEESLRKVMYLSCWGPN
Sbjct: 61 SNIVKEEKAKQSEESLRKVMYLSCWGPN 88

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225447667|ref|XP_002275551.1| PREDICTED: uncharacterized protein LOC100242538 [Vitis vinifera]

 Score =  112 bits (280), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 62/89 (69%), Positives = 74/89 (83%), Gaps = 3/89 (3%)

Query: 1  MNAKGKAWIVAA-IGAVEALKDQGFARWNYPLRSLKQHAETNLRSLVQANKLSSSSAMAL 59
          M+  GKAW+VAA +GAVEALKDQGF RWNY +RS+ QHA+TNLRS  +A KLSSSS+  +
Sbjct: 1  MSHMGKAWMVAASVGAVEALKDQGFCRWNYTMRSIHQHAKTNLRSFSRAKKLSSSSSAMV 60

Query: 60 S-KVKDEKKIKESEESLRKVMYLSCWGPN 87
          S +V+DEK  K+SEESLR VMYLSCWGPN
Sbjct: 61 SSRVRDEK-AKQSEESLRTVMYLSCWGPN 88

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225447657|ref|XP_002275343.1| PREDICTED: uncharacterized protein LOC100240803 [Vitis vinifera]

 Score =  111 bits (277), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 61/88 (69%), Positives = 68/88 (77%), Gaps = 1/88 (1%)

Query: 1  MNAKGKAWIVA-AIGAVEALKDQGFARWNYPLRSLKQHAETNLRSLVQANKLSSSSAMAL 59
          M+  GKAWIVA ++GAVEALKDQGF RWNY +RSL QHA+ NLRS  QA KLSSSS+   
Sbjct: 1  MSHMGKAWIVATSMGAVEALKDQGFCRWNYTMRSLHQHAKNNLRSFSQAKKLSSSSSAMA 60

Query: 60 SKVKDEKKIKESEESLRKVMYLSCWGPN 87
          S    E K K+SEESLR VMYLSCWGPN
Sbjct: 61 SSRVREDKAKKSEESLRAVMYLSCWGPN 88

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225447661|ref|XP_002275421.1| PREDICTED: uncharacterized protein LOC100257932 [Vitis vinifera]

 Score =  109 bits (273), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 62/89 (69%), Positives = 72/89 (80%), Gaps = 3/89 (3%)

Query: 1  MNAKGKAWIVAA-IGAVEALKDQGFARWNYPLRSLKQHAETNLRSLVQANKLSSSSAMAL 59
          M+   KAWIVAA +GAVEALKDQGF RWNY +RS+ QHA+ NLRS  QA KLSSSS+  +
Sbjct: 1  MSHMRKAWIVAASVGAVEALKDQGFCRWNYTMRSIHQHAKNNLRSFSQAKKLSSSSSAMV 60

Query: 60 S-KVKDEKKIKESEESLRKVMYLSCWGPN 87
          S +V+DEK  K+SEESLR VMYLSCWGPN
Sbjct: 61 SSRVRDEK-AKQSEESLRTVMYLSCWGPN 88

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225447659|ref|XP_002275321.1| PREDICTED: uncharacterized protein LOC100263064 [Vitis vinifera]

 Score =  109 bits (273), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 59/88 (67%), Positives = 69/88 (78%), Gaps = 1/88 (1%)

Query: 1  MNAKGKAWIVAA-IGAVEALKDQGFARWNYPLRSLKQHAETNLRSLVQANKLSSSSAMAL 59
          M+   KAW+VAA +GAVEALKDQGF RWNY LRS+ QHA+ NLRS  QA KLSSSS+  +
Sbjct: 1  MSHMRKAWVVAASVGAVEALKDQGFCRWNYTLRSIHQHAKNNLRSFSQARKLSSSSSAMV 60

Query: 60 SKVKDEKKIKESEESLRKVMYLSCWGPN 87
          S    ++K K+SEESLR VMYLSCWGPN
Sbjct: 61 SSRMRDEKAKQSEESLRTVMYLSCWGPN 88

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	87
TAIR|locus:2122799	90	AT4G10270 "AT4G10270" [Arabido	1.0	0.966	0.444	3.8e-14
TAIR|locus:1005716386	83	AT4G10265 "AT4G10265" [Arabido	0.931	0.975	0.438	2.4e-12
TAIR|locus:2134188	95	AT4G33560 "AT4G33560" [Arabido	0.988	0.905	0.355	3.8e-07

TAIR|locus:2122799 AT4G10270 "AT4G10270" [Arabidopsis thaliana (taxid:3702)]

 Score = 182 (69.1 bits), Expect = 3.8e-14, P = 3.8e-14
 Identities = 40/90 (44%), Positives = 46/90 (51%)

Query:     1 MNAKGKAWIVA-AIGAVEALKDQ-GFARWNYPLRSLKQHAETNLRSLVQANXXXXXXXXX 58
             M++  KAW VA +IGAVEALKDQ G  RWNY LRS+ QH   N+RS+ Q           
Sbjct:     1 MSSTSKAWTVAVSIGAVEALKDQLGLCRWNYILRSVNQHLRNNVRSVSQGKRFSSSSVSA 60

Query:    59 XXXXXXXXXXXXXXXXXX-XVMYLSCWGPN 87
                                 VMYLSCWGPN
Sbjct:    61 AVTSSGESEKAKKAEESLRTVMYLSCWGPN 90

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0009611 "response to wounding" evidence=ISS

TAIR|locus:1005716386 AT4G10265 "AT4G10265" [Arabidopsis thaliana (taxid:3702)]

 Score = 165 (63.1 bits), Expect = 2.4e-12, P = 2.4e-12
 Identities = 39/89 (43%), Positives = 46/89 (51%)

Query:     1 MNAKGKAWIVAA-IGAVEALKDQ-GFARWNYPLRSLKQHAETNLRSLVQANXXXXXXXXX 58
             M++  K W+VAA IGAVEALKDQ G  RWNY +RS  Q+   NLRS+ QA          
Sbjct:     1 MSSASKTWMVAASIGAVEALKDQLGVCRWNYVIRSANQYLRNNLRSVSQAKKLSSSSIDY 60

Query:    59 XXXXXXXXXXXXXXXXXXXVMYLSCWGPN 87
                                VMYLSCWGP+
Sbjct:    61 TNKTKQAEESLRT------VMYLSCWGPS 83

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0009611 "response to wounding" evidence=ISS

TAIR|locus:2134188 AT4G33560 "AT4G33560" [Arabidopsis thaliana (taxid:3702)]

 Score = 116 (45.9 bits), Expect = 3.8e-07, P = 3.8e-07
 Identities = 32/90 (35%), Positives = 39/90 (43%)

Query:     1 MNA-KGKAWIVA-AIGAVEALKDQGFARWNYPLRSLKQHAETNLRSLVQANXXX--XXXX 56
             MNA K  +W VA AI AVE LKDQG ARWNY  R L + A   +R++   +         
Sbjct:     1 MNAGKQASWAVATAIAAVEVLKDQGVARWNYLFRLLHKEAMARVRTITVPSRPSPPTSSS 60

Query:    57 XXXXXXXXXXXXXXXXXXXXXVMYLSCWGP 86
                                   M LSC+GP
Sbjct:    61 SATSIRSKPLSTTPFETSFEKAMGLSCFGP 90


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.320   0.130   0.421    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0       87        59   0.00091  102 3  11 22  0.36    28
                                                     29  0.49    27


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  3
  No. of states in DFA:  540 (57 KB)
  Total size of DFA:  99 KB (2069 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  5.17u 0.21s 5.38t   Elapsed:  00:00:00
  Total cpu time:  5.17u 0.21s 5.38t   Elapsed:  00:00:00
  Start:  Thu May  9 23:10:34 2013   End:  Thu May  9 23:10:34 2013

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0001666 "response to hypoxia" evidence=RCA

GO:0009855 "determination of bilateral symmetry" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009944 "polarity specification of adaxial/abaxial axis" evidence=RCA

GO:0010014 "meristem initiation" evidence=RCA

GO:0010075 "regulation of meristem growth" evidence=RCA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00029187001 SubName- Full=Chromosome chr12 scaffold_47, whole genome shotgun sequence; (88 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	87
PLN00165	88	PLN00165, PLN00165, hypothetical protein; Provisio	5e-35
pfam12609	78	pfam12609, DUF3774, Wound-induced protein	7e-29

>gnl|CDD|165732 PLN00165, PLN00165, hypothetical protein; Provisional

 Score =  114 bits (285), Expect = 5e-35
 Identities = 65/89 (73%), Positives = 73/89 (82%), Gaps = 3/89 (3%)

Query: 1  MNAKGKAWIVAA-IGAVEALKDQGFARWNYPLRSLKQHAETNLRSLVQANKLSSSS-AMA 58
          M+  GKAWIVAA +GAVEALKDQGF RWNY LRS+ QHA+ NLRS  QA KLSSSS AM 
Sbjct: 1  MSHMGKAWIVAASVGAVEALKDQGFCRWNYTLRSIHQHAKNNLRSFSQAKKLSSSSSAMV 60

Query: 59 LSKVKDEKKIKESEESLRKVMYLSCWGPN 87
           S+V++EK  K+SEESLR VMYLSCWGPN
Sbjct: 61 SSRVREEKA-KQSEESLRTVMYLSCWGPN 88

Length = 88

>gnl|CDD|221661 pfam12609, DUF3774, Wound-induced protein

 Score = 98.3 bits (245), Expect = 7e-29
 Identities = 45/78 (57%), Positives = 53/78 (67%)

Query: 9  IVAAIGAVEALKDQGFARWNYPLRSLKQHAETNLRSLVQANKLSSSSAMALSKVKDEKKI 68
          + A++GAVEALKDQG  RWNY LRSL Q A+ N R        SSSS+ + S    E K 
Sbjct: 1  VAASVGAVEALKDQGLCRWNYALRSLHQAAKANARRSASQAGKSSSSSSSASAAAAEVKA 60

Query: 69 KESEESLRKVMYLSCWGP 86
          K++EESLR VMYLSCWGP
Sbjct: 61 KQAEESLRTVMYLSCWGP 78

This family of proteins is found in eukaryotes. Proteins in this family are typically between 81 and 97 amino acids in length. The proteins in the family are often annotated as wound-induced proteins however there is little accompanying literature to confirm this. Length = 78

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	87
PLN00165	88	hypothetical protein; Provisional	100.0
PF12609	79	DUF3774: Wound-induced protein; InterPro: IPR02225	100.0

>PLN00165 hypothetical protein; Provisional

Probab=100.00  E-value=1.2e-52  Score=279.22  Aligned_cols=87  Identities=71%  Similarity=1.090  Sum_probs=77.3

Q ss_pred             CCcchHHHHHHH-HHHHHhhhhccccccchhhhhHHHHHHHhhhhhhhhhccCcchHHhhhhhcchhhhhhhhhhhhhhh
Q 034678            1 MNAKGKAWIVAA-IGAVEALKDQGFARWNYPLRSLKQHAETNLRSLVQANKLSSSSAMALSKVKDEKKIKESEESLRKVM   79 (87)
Q Consensus         1 Ms~~~~~w~vA~-vgaVealKDQG~crwn~alrSl~~~ak~~~~s~sq~~~lsssss~~~~~~~~~~k~kqaEESLR~VM   79 (87)
                      ||+++|+||||+ |||||+|||||+|||||+|||||||++++++|++|+++|+++++...+...+++|.||+||+|||||
T Consensus         1 Ms~~~r~w~vAaSvgaVEalkDQG~cRwny~lrS~~~~a~~~~~s~s~~~~lss~~~~~~s~~~~~~k~kq~EEsLRtVM   80 (88)
T PLN00165          1 MSHMGKAWIVAASVGAVEALKDQGFCRWNYTLRSIHQHAKNNLRSFSQAKKLSSSSSAMVSSRVREEKAKQSEESLRTVM   80 (88)
T ss_pred             CccchhHHHHHHHHHHHhhccccCeeehhhHHHHHHHHHHhccccccccccCCCcchhhhhhhhccccccchHHhhheee
Confidence            999999999999 9999999999999999999999999999999999999998765423233233448899999999999


Q ss_pred             eeecccCC
Q 034678           80 YLSCWGPN   87 (87)
Q Consensus        80 yLSCWGPn   87 (87)
                      ||||||||
T Consensus        81 yLSCWGPN   88 (88)
T PLN00165         81 YLSCWGPN   88 (88)
T ss_pred             EecccCCC
Confidence            99999998

>PF12609 DUF3774: Wound-induced protein; InterPro: IPR022251 This family of proteins is found in eukaryotes

Probab=100.00  E-value=1.9e-41  Score=220.60  Aligned_cols=76  Identities=67%  Similarity=1.030  Sum_probs=65.0

Q ss_pred             HHH-HHHHHhhhhc-cccccchhhhhHHHHHHHhh-hhhhhhhccCcchHHhhhhhcchhhhhhhhhhhhhhheeecccC
Q 034678           10 VAA-IGAVEALKDQ-GFARWNYPLRSLKQHAETNL-RSLVQANKLSSSSAMALSKVKDEKKIKESEESLRKVMYLSCWGP   86 (87)
Q Consensus        10 vA~-vgaVealKDQ-G~crwn~alrSl~~~ak~~~-~s~sq~~~lsssss~~~~~~~~~~k~kqaEESLR~VMyLSCWGP   86 (87)
                      ||+ |||||+|||| |+|||||+|||+|+++++++ ++.+|++++++++++. .....+++.||+|||||||||||||||
T Consensus         1 vAasvgavealKDq~g~crwn~alrs~~~~a~~~~~~s~~~~~~~~ss~~~~-~~~~~~~~~k~aEEsLRtVMyLSCWGP   79 (79)
T PF12609_consen    1 VAASVGAVEALKDQAGLCRWNYALRSLHQHAKANVRGSASQAKRLSSSSSSS-SAAAEEEKRKQAEESLRTVMYLSCWGP   79 (79)
T ss_pred             CchhHHHHhccccccccccccHHHHHHHHHhhhccccccccccccCcccccc-cccccccccchhhhhhceeEEEeccCc
Confidence            345 9999999999 99999999999999999998 8889999988764322 233445589999999999999999999

Proteins in this family are typically between 81 and 97 amino acids in length. The proteins in the family are often annotated as wound-induced proteins however there is little accompanying literature to confirm this.

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00