Citrus Sinensis ID: 034705

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80------
Protein Sequence
MVGSITFLKNTGDFVKKGDEFGYFSFGGSTVICVFEKDAIQIDKDLLQNSARALETLVSVGMRMGVSKKEILQTELPSLEACVIAA
Secondary Structure (PSIPRED)
cEEcEEEEcccccEEEEccEEEcEEEccEEEEEEEEcccEEEcHHHHHHccccEEEEEEccccEEEEcccccccccccHHHHHHcc
Secondary Structure Prediction (SSPRO)
ccEEEEEEEccccEEEcccccEEEEEcccEEEEEEccccEEEcHHHHHHHHcccEEEEEEcccccccccccccccccccHHHHccc
Coil and Loop (DISEMBL)
MVGSITFLKntgdfvkkgdefgyfsfggsTVICVFEKDAIQIDKDLLQNSARALETLVSVGmrmgvskkEILQTElpsleacviaa
Flexible Loop (DISEMBL)
mvgsitflkntgdfvkKGDEFGYFSFGGSTVICVFEKDAIQIDKDLLQNSARALETLVSVGMRMGVSKKeilqtelpsleacviaa
Low Complexity Region (SEG)
MVGSITFLKNTGDFVKKGDEFGYFSFGGSTVICVFEKDAIQIDKDLLQNSARALETLVSVGMRMGVSKKEILQTELPSLEACVIAA
Disordered region (IsUnstruct)
****ITFLKNTGDFVKKGDEFGYFSFGGSTVICVFEKDAIQIDKDLLQNSARALETLVSVGMRMGVSKKEILQTELPSLEACV***
Disordered Region (DISOPRED)
MVGSITFLKNTGDFVKKGDEFGYFSFGGSTVICVFEKDAIQIDKDLLQNSARALETLVSVGMRMG**************EAC****
Disordered Region (DISEMBL)
MVGSITFLKNTGDFVKKGDEFGYFSFGGSTVICVFEKDAIQIDKDLLQNSARALETLVSVGMRMGVSKKEILQTELPSLEACVIAA
Disordered Region (DISPRO)
MVGSITFLKNTGDFVKKGDEFGYFSFGGSTVICVFEKDAIQIDKDLLQNSARALETLVSVGMRMGV********************
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MVGSITFLKNTGDFVKKGDEFGYFSFGGSTVICVFEKDAIQIDKDLLQNSARALETLVSVGMRMGVSKKEILQTELPSLEACVIAA
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	86	2.2.26 [Sep-21-2011]
O14111	967	Phosphatidylserine decarb	yes	no	0.755	0.067	0.507	1e-12
P53037	1138	Phosphatidylserine decarb	yes	no	0.755	0.057	0.476	2e-11
Q8RGF2	300	Phosphatidylserine decarb	yes	no	0.790	0.226	0.485	9e-11
A5N497	296	Phosphatidylserine decarb	yes	no	0.755	0.219	0.507	3e-10
B9DXW5	296	Phosphatidylserine decarb	yes	no	0.755	0.219	0.507	3e-10
A8MJ83	296	Phosphatidylserine decarb	yes	no	0.744	0.216	0.484	3e-10
A0Q3R9	295	Phosphatidylserine decarb	yes	no	0.744	0.216	0.468	5e-10
Q9Z767	301	Phosphatidylserine decarb	yes	no	0.802	0.229	0.463	1e-09
Q5L4W1	299	Phosphatidylserine decarb	yes	no	0.802	0.230	0.463	1e-09
Q97N08	294	Phosphatidylserine decarb	yes	no	0.720	0.210	0.515	1e-09

>sp|O14111|PSD3_SCHPO Phosphatidylserine decarboxylase proenzyme 3 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=psd3 PE=3 SV=2

 Score = 72.0 bits (175), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 33/65 (50%), Positives = 43/65 (66%)

Query: 1   MVGSITFLKNTGDFVKKGDEFGYFSFGGSTVICVFEKDAIQIDKDLLQNSARALETLVSV 60
           MVGS     + G  V++ DE GYF FGGSTVI +FE +    D+DLL+NS   +ETLV +
Sbjct: 884 MVGSTVLTVDEGKIVQRSDELGYFKFGGSTVITLFEPNVTSFDEDLLRNSKTKIETLVKM 943

Query: 61  GMRMG 65
           G R+G
Sbjct: 944 GERIG 948

May be involved in the regulation of phospholipid biosynthesis and interorganelle trafficking of phosphatidylserine (By similarity). Together with psd1 and psd2, responsible for the majority of phosphatidylethanolamine synthesis.
Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)
EC: 4EC: .EC: 1EC: .EC: 1EC: .EC: 6EC: 5

>sp|P53037|PSD2_YEAST Phosphatidylserine decarboxylase proenzyme 2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=PSD2 PE=1 SV=1

 Score = 67.4 bits (163), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 31/65 (47%), Positives = 40/65 (61%)

Query: 1    MVGSITFLKNTGDFVKKGDEFGYFSFGGSTVICVFEKDAIQIDKDLLQNSARALETLVSV 60
            MVGSI       D V+ G E GYF FGGST+I +   +    D DL++NS+  +ETLV V
Sbjct: 1015 MVGSILLTCKENDVVESGQELGYFKFGGSTIIIIIPHNNFMFDSDLVKNSSERIETLVKV 1074

Query: 61   GMRMG 65
            GM +G
Sbjct: 1075 GMSIG 1079

May be involved in the regulation of phospholipid biosynthesis and interorganelle trafficking of phosphatidylserine.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

EC: 4

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 6

EC: 5

>sp|Q8RGF2|PSD_FUSNN Phosphatidylserine decarboxylase proenzyme OS=Fusobacterium nucleatum subsp. nucleatum (strain ATCC 25586 / CIP 101130 / JCM 8532 / LMG 13131) GN=psd PE=3 SV=1

 Score = 65.5 bits (158), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 33/68 (48%), Positives = 44/68 (64%)

Query: 1   MVGSITFLKNTGDFVKKGDEFGYFSFGGSTVICVFEKDAIQIDKDLLQNSARALETLVSV 60
           MVG I     T   VKKG+E GYF FGGST I VFEK+ + IDKD+++N+   +ET + +
Sbjct: 232 MVGGIVQTYKTNSSVKKGEEKGYFLFGGSTCILVFEKNKVVIDKDIIENTQNKIETRIYM 291

Query: 61  GMRMGVSK 68
           G + G  K
Sbjct: 292 GEKFGNEK 299

Fusobacterium nucleatum subsp. nucleatum (strain ATCC 25586 / CIP 101130 / JCM 8532 / LMG 13131) (taxid: 190304)

EC: 4

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 6

EC: 5

>sp|A5N497|PSD_CLOK5 Phosphatidylserine decarboxylase proenzyme OS=Clostridium kluyveri (strain ATCC 8527 / DSM 555 / NCIMB 10680) GN=psd PE=3 SV=1

 Score = 63.9 bits (154), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 33/65 (50%), Positives = 41/65 (63%)

Query: 2   VGSITFLKNTGDFVKKGDEFGYFSFGGSTVICVFEKDAIQIDKDLLQNSARALETLVSVG 61
           VGSI      G  V KGDE GYF FGGST+I  FE++ I+I KDLL+ S    ET V +G
Sbjct: 229 VGSIVQTYFPGKHVSKGDEKGYFKFGGSTIILFFEQNKIRIHKDLLEQSNMGYETKVLMG 288

Query: 62  MRMGV 66
             +G+
Sbjct: 289 ESIGI 293

Clostridium kluyveri (strain ATCC 8527 / DSM 555 / NCIMB 10680) (taxid: 431943)

EC: 4

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 6

EC: 5

>sp|B9DXW5|PSD_CLOK1 Phosphatidylserine decarboxylase proenzyme OS=Clostridium kluyveri (strain NBRC 12016) GN=psd PE=3 SV=1

 Score = 63.9 bits (154), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 33/65 (50%), Positives = 41/65 (63%)

Query: 2   VGSITFLKNTGDFVKKGDEFGYFSFGGSTVICVFEKDAIQIDKDLLQNSARALETLVSVG 61
           VGSI      G  V KGDE GYF FGGST+I  FE++ I+I KDLL+ S    ET V +G
Sbjct: 229 VGSIVQTYFPGKHVSKGDEKGYFKFGGSTIILFFEQNKIRIHKDLLEQSNMGYETKVLMG 288

Query: 62  MRMGV 66
             +G+
Sbjct: 289 ESIGI 293

Clostridium kluyveri (strain NBRC 12016) (taxid: 583346)

EC: 4

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 6

EC: 5

>sp|A8MJ83|PSD_ALKOO Phosphatidylserine decarboxylase proenzyme OS=Alkaliphilus oremlandii (strain OhILAs) GN=psd PE=3 SV=1

 Score = 63.5 bits (153), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 31/64 (48%), Positives = 44/64 (68%)

Query: 2   VGSITFLKNTGDFVKKGDEFGYFSFGGSTVICVFEKDAIQIDKDLLQNSARALETLVSVG 61
           VGSI      G  V+KG+E GYF FGGSTVI   +K A++ID+DL++N+ + +ET V +G
Sbjct: 231 VGSIVQTYKEGQSVEKGEEKGYFKFGGSTVILFLKKGAVKIDRDLIENTEKHIETKVHMG 290

Query: 62  MRMG 65
             +G
Sbjct: 291 EGIG 294

Alkaliphilus oremlandii (strain OhILAs) (taxid: 350688)

EC: 4

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 6

EC: 5

>sp|A0Q3R9|PSD_CLONN Phosphatidylserine decarboxylase proenzyme OS=Clostridium novyi (strain NT) GN=psd PE=3 SV=1

 Score = 63.2 bits (152), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 30/64 (46%), Positives = 42/64 (65%)

Query: 2   VGSITFLKNTGDFVKKGDEFGYFSFGGSTVICVFEKDAIQIDKDLLQNSARALETLVSVG 61
           VGSI       ++V KGDE GYF FGGST+I  FEKD I +DKD+++ + +  E  V +G
Sbjct: 229 VGSIIQTYTPNEYVVKGDEKGYFKFGGSTIILFFEKDKIIVDKDIVEQTQKGFECKVLMG 288

Query: 62  MRMG 65
            ++G
Sbjct: 289 EKIG 292

Clostridium novyi (strain NT) (taxid: 386415)

EC: 4

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 6

EC: 5

>sp|Q9Z767|PSD_CHLPN Phosphatidylserine decarboxylase proenzyme OS=Chlamydia pneumoniae GN=psd PE=3 SV=1

 Score = 62.0 bits (149), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 32/69 (46%), Positives = 43/69 (62%)

Query: 2   VGSITFLKNTGDFVKKGDEFGYFSFGGSTVICVFEKDAIQIDKDLLQNSARALETLVSVG 61
           VGSI    +      KGDE G+F+FGGSTVI +F  +AI+ D DLL+NS    ET   +G
Sbjct: 231 VGSIVQTFSPNQTYAKGDEKGFFAFGGSTVILLFLPNAIRFDNDLLKNSRMGFETRCLMG 290

Query: 62  MRMGVSKKE 70
             +G S++E
Sbjct: 291 QSLGRSQRE 299

Chlamydia pneumoniae (taxid: 83558)

EC: 4

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 6

EC: 5

>sp|Q5L4W1|PSD_CHLAB Phosphatidylserine decarboxylase proenzyme OS=Chlamydophila abortus (strain S26/3) GN=psd PE=3 SV=1

 Score = 62.0 bits (149), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 32/69 (46%), Positives = 42/69 (60%)

Query: 2   VGSITFLKNTGDFVKKGDEFGYFSFGGSTVICVFEKDAIQIDKDLLQNSARALETLVSVG 61
           VGSI      G+   KGDE G+F  GGSTVI +F+  ++Q D DLL+NS   LET   +G
Sbjct: 231 VGSIIQTYKPGEKYSKGDEKGFFEIGGSTVIVLFQPGSVQFDADLLKNSRMGLETRCLMG 290

Query: 62  MRMGVSKKE 70
             +G S +E
Sbjct: 291 QSLGRSLRE 299

Chlamydophila abortus (strain S26/3) (taxid: 218497)

EC: 4

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 6

EC: 5

>sp|Q97N08|PSD1_CLOAB Phosphatidylserine decarboxylase proenzyme 1 OS=Clostridium acetobutylicum (strain ATCC 824 / DSM 792 / JCM 1419 / LMG 5710 / VKM B-1787) GN=psd1 PE=3 SV=1

 Score = 62.0 bits (149), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 34/66 (51%), Positives = 46/66 (69%), Gaps = 4/66 (6%)

Query: 2   VGSI--TFLKNTGDFVKKGDEFGYFSFGGSTVICVFEKDAIQIDKDLLQNSARALETLVS 59
           VGSI  T+ +NT   V KGDE GYF FGGSTV+  FEKD+++ID+D+L+ +    ET V 
Sbjct: 229 VGSIIQTYKENTK--VNKGDEKGYFKFGGSTVVLFFEKDSVKIDEDILEQTRLGYETKVF 286

Query: 60  VGMRMG 65
           +G  +G
Sbjct: 287 MGESIG 292

Clostridium acetobutylicum (strain ATCC 824 / DSM 792 / JCM 1419 / LMG 5710 / VKM B-1787) (taxid: 272562)

EC: 4

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 6

EC: 5

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	86
225447822	640	PREDICTED: C2 domain-containing protein	1.0	0.134	0.709	9e-29
159895677	200	phosphatidylserine decarboxylase 2 [Goss	0.976	0.42	0.75	2e-27
449478940	661	PREDICTED: LOW QUALITY PROTEIN: phosphat	0.976	0.127	0.666	6e-27
224058689	361	predicted protein [Populus trichocarpa]	0.976	0.232	0.702	8e-27
449438532	640	PREDICTED: phosphatidylserine decarboxyl	0.976	0.131	0.666	1e-26
147768971	201	hypothetical protein VITISV_035914 [Viti	1.0	0.427	0.674	1e-26
255570988	633	phosphatidylserine decarboxylase, putati	1.0	0.135	0.670	3e-26
218189776	613	hypothetical protein OsI_05287 [Oryza sa	0.953	0.133	0.705	4e-25
222619910	605	hypothetical protein OsJ_04838 [Oryza sa	0.953	0.135	0.705	5e-25
226499906	644	uncharacterized protein LOC100275554 [Ze	0.918	0.122	0.7	6e-25

>gi|225447822|ref|XP_002267948.1| PREDICTED: C2 domain-containing protein C31G5.15-like [Vitis vinifera]

 Score =  130 bits (327), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 61/86 (70%), Positives = 74/86 (86%)

Query: 1   MVGSITFLKNTGDFVKKGDEFGYFSFGGSTVICVFEKDAIQIDKDLLQNSARALETLVSV 60
           MVGSITF K  GD+V+KG+EFGYFSFGGSTVICVFEKD I+ID+DLL+NS ++LETLV+V
Sbjct: 555 MVGSITFTKKKGDYVQKGEEFGYFSFGGSTVICVFEKDTIEIDEDLLENSTKSLETLVAV 614

Query: 61  GMRMGVSKKEILQTELPSLEACVIAA 86
           GM++GVS K+    ELP+LE CVI A
Sbjct: 615 GMKLGVSTKKRAGPELPNLEGCVIGA 640

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|159895677|gb|ABX10449.1| phosphatidylserine decarboxylase 2 [Gossypium hirsutum]

 Score =  126 bits (316), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 63/84 (75%), Positives = 70/84 (83%)

Query: 1   MVGSITFLKNTGDFVKKGDEFGYFSFGGSTVICVFEKDAIQIDKDLLQNSARALETLVSV 60
           MVGSITF+K  GDFVKKG+EFGYFSFGGSTVICVFEK AI ID DLL NS R+LETLVSV
Sbjct: 115 MVGSITFVKKEGDFVKKGEEFGYFSFGGSTVICVFEKGAIDIDDDLLANSGRSLETLVSV 174

Query: 61  GMRMGVSKKEILQTELPSLEACVI 84
           GM +GVSKK+     LP+LE CV+
Sbjct: 175 GMTLGVSKKKPGSGGLPNLENCVL 198

Source: Gossypium hirsutum

Species: Gossypium hirsutum

Genus: Gossypium

Family: Malvaceae

Order: Malvales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449478940|ref|XP_004155459.1| PREDICTED: LOW QUALITY PROTEIN: phosphatidylserine decarboxylase proenzyme 3-like [Cucumis sativus]

 Score =  124 bits (312), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 56/84 (66%), Positives = 70/84 (83%)

Query: 1   MVGSITFLKNTGDFVKKGDEFGYFSFGGSTVICVFEKDAIQIDKDLLQNSARALETLVSV 60
           MVGSITF K  GD+VKKG+EFGYFSFGGSTVICVFEKD+IQ+D+DLL NS+R+LETLV V
Sbjct: 574 MVGSITFXKGKGDYVKKGEEFGYFSFGGSTVICVFEKDSIQLDEDLLANSSRSLETLVRV 633

Query: 61  GMRMGVSKKEILQTELPSLEACVI 84
           G ++G+S + + QT+ P +  C I
Sbjct: 634 GTKLGLSTRNVSQTDFPDVSRCAI 657

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224058689|ref|XP_002299604.1| predicted protein [Populus trichocarpa] gi|222846862|gb|EEE84409.1| predicted protein [Populus trichocarpa]

 Score =  124 bits (311), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 59/84 (70%), Positives = 70/84 (83%)

Query: 1   MVGSITFLKNTGDFVKKGDEFGYFSFGGSTVICVFEKDAIQIDKDLLQNSARALETLVSV 60
           MVGSITF K  GD VKKGDE+GYFSFGGSTVICVFEKDAI+ID+DLL NSAR+LETLVSV
Sbjct: 276 MVGSITFSKKAGDHVKKGDEYGYFSFGGSTVICVFEKDAIEIDEDLLANSARSLETLVSV 335

Query: 61  GMRMGVSKKEILQTELPSLEACVI 84
           GM++GV+ K+     LP+ +  V+
Sbjct: 336 GMKLGVATKKQATVNLPNFDNWVL 359

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449438532|ref|XP_004137042.1| PREDICTED: phosphatidylserine decarboxylase proenzyme 3-like [Cucumis sativus]

 Score =  124 bits (310), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 56/84 (66%), Positives = 70/84 (83%)

Query: 1   MVGSITFLKNTGDFVKKGDEFGYFSFGGSTVICVFEKDAIQIDKDLLQNSARALETLVSV 60
           MVGSITF K  GD+VKKG+EFGYFSFGGSTVICVFEKD+IQ+D+DLL NS+R+LETLV V
Sbjct: 553 MVGSITFKKGKGDYVKKGEEFGYFSFGGSTVICVFEKDSIQLDEDLLANSSRSLETLVRV 612

Query: 61  GMRMGVSKKEILQTELPSLEACVI 84
           G ++G+S + + QT+ P +  C I
Sbjct: 613 GTKLGLSTRNVSQTDFPDVSRCAI 636

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147768971|emb|CAN62463.1| hypothetical protein VITISV_035914 [Vitis vinifera]

 Score =  123 bits (309), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 58/86 (67%), Positives = 72/86 (83%)

Query: 1   MVGSITFLKNTGDFVKKGDEFGYFSFGGSTVICVFEKDAIQIDKDLLQNSARALETLVSV 60
           MV SITF K  GD+V+KG+EFGYFSFGGSTVICVFEKD ++ID+DLL+NS ++LETLV+V
Sbjct: 116 MVXSITFSKKKGDYVQKGEEFGYFSFGGSTVICVFEKDTLEIDEDLLENSTKSLETLVAV 175

Query: 61  GMRMGVSKKEILQTELPSLEACVIAA 86
           GM++GVS K+    ELP+LE C I A
Sbjct: 176 GMKLGVSTKKQAGPELPNLENCAIGA 201

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255570988|ref|XP_002526445.1| phosphatidylserine decarboxylase, putative [Ricinus communis] gi|223534225|gb|EEF35940.1| phosphatidylserine decarboxylase, putative [Ricinus communis]

 Score =  122 bits (306), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 61/91 (67%), Positives = 72/91 (79%), Gaps = 5/91 (5%)

Query: 1   MVGSITFLKNTGDFVKKGDEFGYFSFGGSTVICVFEK-----DAIQIDKDLLQNSARALE 55
           MVGSITFLK  GD++KKGDE GYFSFGGSTVICVFEK     DAI ID+DLL NSAR+LE
Sbjct: 543 MVGSITFLKKEGDYIKKGDELGYFSFGGSTVICVFEKEDLVQDAILIDEDLLANSARSLE 602

Query: 56  TLVSVGMRMGVSKKEILQTELPSLEACVIAA 86
           TLV VGM++GV+ +   + +LP+LE C I A
Sbjct: 603 TLVCVGMKLGVAARRRSEIDLPNLENCEIRA 633

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|218189776|gb|EEC72203.1| hypothetical protein OsI_05287 [Oryza sativa Indica Group]

 Score =  118 bits (296), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 60/85 (70%), Positives = 68/85 (80%), Gaps = 3/85 (3%)

Query: 1   MVGSITFLKNTGDFVKKGDEFGYFSFGGSTVICVFEKDAIQIDKDLLQNSARALETLVSV 60
           MVGSI FLK  GD+V KGDEFGYF+FGGSTVICVFEKDAI+ D DLL NSAR+LETLVSV
Sbjct: 530 MVGSIEFLKEEGDYVHKGDEFGYFAFGGSTVICVFEKDAIEFDADLLANSARSLETLVSV 589

Query: 61  GMRMGVS-KKEILQTELPSLEACVI 84
           GMR+GVS +   LQ +   LE C +
Sbjct: 590 GMRLGVSTRNRDLQPQ--ELEKCSL 612

Source: Oryza sativa Indica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|222619910|gb|EEE56042.1| hypothetical protein OsJ_04838 [Oryza sativa Japonica Group]

 Score =  118 bits (296), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 60/85 (70%), Positives = 68/85 (80%), Gaps = 3/85 (3%)

Query: 1   MVGSITFLKNTGDFVKKGDEFGYFSFGGSTVICVFEKDAIQIDKDLLQNSARALETLVSV 60
           MVGSI FLK  GD+V KGDEFGYF+FGGSTVICVFEKDAI+ D DLL NSAR+LETLVSV
Sbjct: 522 MVGSIEFLKEEGDYVHKGDEFGYFAFGGSTVICVFEKDAIEFDADLLANSARSLETLVSV 581

Query: 61  GMRMGVS-KKEILQTELPSLEACVI 84
           GMR+GVS +   LQ +   LE C +
Sbjct: 582 GMRLGVSTRNRDLQPQ--ELEKCSL 604

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|226499906|ref|NP_001143081.1| uncharacterized protein LOC100275554 [Zea mays] gi|195613966|gb|ACG28813.1| hypothetical protein [Zea mays]

 Score =  117 bits (294), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 56/80 (70%), Positives = 67/80 (83%), Gaps = 1/80 (1%)

Query: 1   MVGSITFLKNTGDFVKKGDEFGYFSFGGSTVICVFEKDAIQIDKDLLQNSARALETLVSV 60
           MVGSITFLK  GD+V+KGDEFGYFSFGGSTVICVFEKDAIQ D DL+ NS R+LETLVSV
Sbjct: 561 MVGSITFLKKEGDYVRKGDEFGYFSFGGSTVICVFEKDAIQFDADLVANSERSLETLVSV 620

Query: 61  GMRMGVSKKEILQTELPSLE 80
           GM +G+S +   + ++P L+
Sbjct: 621 GMTLGISTRN-KEMQVPDLQ 639

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	86
TAIR|locus:2120820	635	PSD3 "phosphatidylserine decar	0.883	0.119	0.678	2e-23
TAIR|locus:2175574	635	PSD2 "phosphatidylserine decar	0.883	0.119	0.697	2.4e-22
DICTYBASE|DDB_G0282337	563	DDB_G0282337 "putative phospha	0.779	0.119	0.492	4.3e-12
CGD|CAL0003011	1070	orf19.3954 [Candida albicans (	0.779	0.062	0.507	5.3e-12
UNIPROTKB|Q5AK66	1070	PSD2 "Putative uncharacterized	0.779	0.062	0.507	5.3e-12
ASPGD|ASPL0000035952	1053	AN3188 [Emericella nidulans (t	0.895	0.073	0.481	8.4e-12
POMBASE|SPAC31G5.15	967	psd3 "phosphatidylserine decar	0.755	0.067	0.507	2.6e-11
SGD|S000003402	1138	PSD2 "Phosphatidylserine decar	0.755	0.057	0.476	2.9e-10
ASPGD|ASPL0000009559	347	AN7989 [Emericella nidulans (t	0.627	0.155	0.518	1.8e-09
TIGR_CMR|BA_4565	262	BA_4565 "phosphatidylserine de	0.5	0.164	0.488	0.00012

TAIR|locus:2120820 PSD3 "phosphatidylserine decarboxylase 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 278 (102.9 bits), Expect = 2.0e-23, P = 2.0e-23
 Identities = 57/84 (67%), Positives = 68/84 (80%)

Query:     1 MVGSITFLKNTGDFVKKGDEFGYFSFGGSTVICVFEKDAIQIDKDLLQNSARALETLVSV 60
             MVGSI+F++  GD VKKGDE GYFSFGGSTVICVFEKD+I+ID+DLL NSAR+LETLV+V
Sbjct:   558 MVGSISFVRQEGDHVKKGDELGYFSFGGSTVICVFEKDSIKIDEDLLANSARSLETLVTV 617

Query:    61 GMRMGVSKKEILQTELPSLEACVI 84
             GM++GVS         P LE CV+
Sbjct:   618 GMQLGVS--------FPKLENCVL 633

GO:0004609 "phosphatidylserine decarboxylase activity" evidence=IEA;IGI;IDA

GO:0005509 "calcium ion binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0008654 "phospholipid biosynthetic process" evidence=IEA;ISS

GO:0005783 "endoplasmic reticulum" evidence=IDA

TAIR|locus:2175574 PSD2 "phosphatidylserine decarboxylase 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 268 (99.4 bits), Expect = 2.4e-22, P = 2.4e-22
 Identities = 53/76 (69%), Positives = 62/76 (81%)

Query:     1 MVGSITFLKNTGDFVKKGDEFGYFSFGGSTVICVFEKDAIQIDKDLLQNSARALETLVSV 60
             MVGSI F++  G+ VKKGDE GYFSFGGSTVICVFEKDAI ID DLL NS R+LETLVSV
Sbjct:   559 MVGSINFVRKEGEHVKKGDELGYFSFGGSTVICVFEKDAIGIDNDLLVNSGRSLETLVSV 618

Query:    61 GMRMGVSKKEILQTEL 76
             GM++GVS +   ++ L
Sbjct:   619 GMQLGVSTRTFARSTL 634

GO:0004609 "phosphatidylserine decarboxylase activity" evidence=IEA;ISS;IMP;IDA

GO:0005509 "calcium ion binding" evidence=IEA

GO:0005739 "mitochondrion" evidence=ISM

GO:0008654 "phospholipid biosynthetic process" evidence=IEA;ISS

GO:0009705 "plant-type vacuole membrane" evidence=IDA

DICTYBASE|DDB_G0282337 DDB_G0282337 "putative phosphatidylserine decarboxylase" [Dictyostelium discoideum (taxid:44689)]

 Score = 172 (65.6 bits), Expect = 4.3e-12, P = 4.3e-12
 Identities = 33/67 (49%), Positives = 44/67 (65%)

Query:     1 MVGSITFLKNTGDFVKKGDEFGYFSFGGSTVICVFEKDAIQIDKDLLQNSARALETLVSV 60
             +VGSI      G  V KGDE GYF+FGGST++ +FEK+ I+ D DL+ NS +  ETL+ V
Sbjct:   495 LVGSIHLTTKQGQHVNKGDEQGYFAFGGSTILLLFEKNTIEFDNDLIVNSLKPTETLIKV 554

Query:    61 GMRMGVS 67
                +G S
Sbjct:   555 NSSLGKS 561

GO:0008654 "phospholipid biosynthetic process" evidence=IEA

GO:0005509 "calcium ion binding" evidence=IEA

GO:0004609 "phosphatidylserine decarboxylase activity" evidence=IEA

GO:0044351 "macropinocytosis" evidence=RCA

CGD|CAL0003011 orf19.3954 [Candida albicans (taxid:5476)]

 Score = 175 (66.7 bits), Expect = 5.3e-12, P = 5.3e-12
 Identities = 34/67 (50%), Positives = 46/67 (68%)

Query:     1 MVGSITFLKNTGDFVKKGDEFGYFSFGGSTVICVFEKDAIQIDKDLLQNSARALETLVSV 60
             MVGSI   K+TG  + KG+E GYF FGGSTV+ + E +  + D DL++NS+  LETL+ V
Sbjct:   928 MVGSIVLTKDTGYEISKGEELGYFKFGGSTVLLLIESEKFKFDTDLVKNSSSGLETLLRV 987

Query:    61 GMRMGVS 67
             G  +G S
Sbjct:   988 GQSIGHS 994

GO:0005768 "endosome" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0032153 "cell division site" evidence=IEA

GO:0004609 "phosphatidylserine decarboxylase activity" evidence=IEA

GO:0006646 "phosphatidylethanolamine biosynthetic process" evidence=IEA

GO:0006656 "phosphatidylcholine biosynthetic process" evidence=IEA

GO:0071775 "regulation of cell cycle cytokinesis" evidence=IEA

GO:0008360 "regulation of cell shape" evidence=IEA

GO:0036180 "filamentous growth of a population of unicellular organisms in response to biotic stimulus" evidence=IMP

GO:0036170 "filamentous growth of a population of unicellular organisms in response to starvation" evidence=IMP

GO:0036171 "filamentous growth of a population of unicellular organisms in response to chemical stimulus" evidence=IMP

UNIPROTKB|Q5AK66 PSD2 "Putative uncharacterized protein PSD2" [Candida albicans SC5314 (taxid:237561)]

 Score = 175 (66.7 bits), Expect = 5.3e-12, P = 5.3e-12
 Identities = 34/67 (50%), Positives = 46/67 (68%)

Query:     1 MVGSITFLKNTGDFVKKGDEFGYFSFGGSTVICVFEKDAIQIDKDLLQNSARALETLVSV 60
             MVGSI   K+TG  + KG+E GYF FGGSTV+ + E +  + D DL++NS+  LETL+ V
Sbjct:   928 MVGSIVLTKDTGYEISKGEELGYFKFGGSTVLLLIESEKFKFDTDLVKNSSSGLETLLRV 987

Query:    61 GMRMGVS 67
             G  +G S
Sbjct:   988 GQSIGHS 994

GO:0036170 "filamentous growth of a population of unicellular organisms in response to starvation" evidence=IMP

GO:0036171 "filamentous growth of a population of unicellular organisms in response to chemical stimulus" evidence=IMP

GO:0036180 "filamentous growth of a population of unicellular organisms in response to biotic stimulus" evidence=IMP

ASPGD|ASPL0000035952 AN3188 [Emericella nidulans (taxid:162425)]

 Score = 173 (66.0 bits), Expect = 8.4e-12, P = 8.4e-12
 Identities = 38/79 (48%), Positives = 50/79 (63%)

Query:     1 MVGSITFLKNTGDFVKKGDEFGYFSFGGSTVICVFEKDAIQIDKDLLQNSARALETLVSV 60
             MVGS    +  G+ V + +E GYF FGGST++ +FE+  +  D DL+ NS  ALETLV V
Sbjct:   944 MVGSTVITRQAGEKVSRAEELGYFKFGGSTLLLLFEEGKVNFDSDLVDNSRGALETLVRV 1003

Query:    61 GMRMGVSKKEILQTELPSL 79
             GM +G S  +I Q E P L
Sbjct:  1004 GMSVGHSP-DIPQFE-PDL 1020

GO:0006644 "phospholipid metabolic process" evidence=RCA

GO:0004609 "phosphatidylserine decarboxylase activity" evidence=IEA;RCA

GO:0006646 "phosphatidylethanolamine biosynthetic process" evidence=IEA

GO:0005509 "calcium ion binding" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0032153 "cell division site" evidence=IEA

POMBASE|SPAC31G5.15 psd3 "phosphatidylserine decarboxylase Psd3" [Schizosaccharomyces pombe (taxid:4896)]

 Score = 168 (64.2 bits), Expect = 2.6e-11, P = 2.6e-11
 Identities = 33/65 (50%), Positives = 43/65 (66%)

Query:     1 MVGSITFLKNTGDFVKKGDEFGYFSFGGSTVICVFEKDAIQIDKDLLQNSARALETLVSV 60
             MVGS     + G  V++ DE GYF FGGSTVI +FE +    D+DLL+NS   +ETLV +
Sbjct:   884 MVGSTVLTVDEGKIVQRSDELGYFKFGGSTVITLFEPNVTSFDEDLLRNSKTKIETLVKM 943

Query:    61 GMRMG 65
             G R+G
Sbjct:   944 GERIG 948

GO:0000139 "Golgi membrane" evidence=ISS

GO:0000329 "fungal-type vacuole membrane" evidence=ISS

GO:0004609 "phosphatidylserine decarboxylase activity" evidence=IGI;ISS

GO:0005543 "phospholipid binding" evidence=ISM

GO:0005795 "Golgi stack" evidence=IEA

GO:0005829 "cytosol" evidence=IDA

GO:0006646 "phosphatidylethanolamine biosynthetic process" evidence=IGI

GO:0006656 "phosphatidylcholine biosynthetic process" evidence=ISS

GO:0032153 "cell division site" evidence=IDA

SGD|S000003402 PSD2 "Phosphatidylserine decarboxylase of the Golgi and vacuolar membranes" [Saccharomyces cerevisiae (taxid:4932)]

 Score = 159 (61.0 bits), Expect = 2.9e-10, P = 2.9e-10
 Identities = 31/65 (47%), Positives = 40/65 (61%)

Query:     1 MVGSITFLKNTGDFVKKGDEFGYFSFGGSTVICVFEKDAIQIDKDLLQNSARALETLVSV 60
             MVGSI       D V+ G E GYF FGGST+I +   +    D DL++NS+  +ETLV V
Sbjct:  1015 MVGSILLTCKENDVVESGQELGYFKFGGSTIIIIIPHNNFMFDSDLVKNSSERIETLVKV 1074

Query:    61 GMRMG 65
             GM +G
Sbjct:  1075 GMSIG 1079

GO:0016829 "lyase activity" evidence=IEA

GO:0005773 "vacuole" evidence=IEA

GO:0005768 "endosome" evidence=IDA

GO:0006646 "phosphatidylethanolamine biosynthetic process" evidence=IEA

GO:0006629 "lipid metabolic process" evidence=IEA

GO:0008654 "phospholipid biosynthetic process" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0005795 "Golgi stack" evidence=IEA

GO:0004609 "phosphatidylserine decarboxylase activity" evidence=IEA;IGI

GO:0006656 "phosphatidylcholine biosynthetic process" evidence=IDA

GO:0016831 "carboxy-lyase activity" evidence=IEA

ASPGD|ASPL0000009559 AN7989 [Emericella nidulans (taxid:162425)]

 Score = 144 (55.7 bits), Expect = 1.8e-09, P = 1.8e-09
 Identities = 28/54 (51%), Positives = 37/54 (68%)

Query:    12 GDFVKKGDEFGYFSFGGSTVICVFEKDAIQIDKDLLQNSARALETLVSVGMRMG 65
             G  +KKGDE G F FGGS++I  F+K  IQ D+DL++ S RA+   V VGM +G
Sbjct:   287 GAEIKKGDELGIFQFGGSSIIVAFQKGRIQFDEDLVEPSKRAIAVDVEVGMSLG 340

GO:0006644 "phospholipid metabolic process" evidence=RCA

GO:0004609 "phosphatidylserine decarboxylase activity" evidence=RCA

GO:0005575 "cellular_component" evidence=ND

GO:0008654 "phospholipid biosynthetic process" evidence=IEA

TIGR_CMR|BA_4565 BA_4565 "phosphatidylserine decarboxylase" [Bacillus anthracis str. Ames (taxid:198094)]

 Score = 98 (39.6 bits), Expect = 0.00012, P = 0.00012
 Identities = 22/45 (48%), Positives = 31/45 (68%)

Query:     2 VGSITFLKNTGDFVKKGDEFGYFSFGGSTVICVFEKDAIQIDKDL 46
             V SI  L    D V+KG+E  YF+FG STV+ +FEKD I++ ++L
Sbjct:   201 VNSIELLHER-DTVQKGEEMAYFTFG-STVVLLFEKDMIEVVQEL 243


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.320   0.137   0.379    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0       86        86   0.00091  102 3  11 22  0.43    29
                                                     29  0.47    30


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  10
  No. of states in DFA:  436 (46 KB)
  Total size of DFA:  78 KB (2064 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  9.10u 0.14s 9.24t   Elapsed:  00:00:01
  Total cpu time:  9.10u 0.14s 9.24t   Elapsed:  00:00:01
  Start:  Thu May  9 23:26:38 2013   End:  Thu May  9 23:26:39 2013

GO:0004609 "phosphatidylserine decarboxylase activity" evidence=ISS

GO:0008654 "phospholipid biosynthetic process" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	GSVIVG00031553001	SubName- Full=Chromosome chr12 scaffold_57, whole genome shotgun sequence; (213 aa)
		(Vitis vinifera)
Predicted Functional Partners:
	GSVIVG00015270001	SubName- Full=Chromosome chr18 scaffold_1, whole genome shotgun sequence; (752 aa)	•						•		0.582
	GSVIVG00003012001	RecName- Full=D-tyrosyl-tRNA(Tyr) deacylase; EC=3.1.-.-;; Hydrolyzes D-tyrosyl-tRNA(Tyr) into D [...] (153 aa)	•								0.513
	GSVIVG00032094001	SubName- Full=Chromosome chr4 scaffold_6, whole genome shotgun sequence; (195 aa)	•								0.436
	GSVIVG00015673001	SubName- Full=Chromosome chr2 scaffold_11, whole genome shotgun sequence; (332 aa)							•		0.416
	GSVIVG00037029001	SubName- Full=Chromosome chr17 scaffold_85, whole genome shotgun sequence; (439 aa)							•		0.415

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	86
PLN02964	644	PLN02964, PLN02964, phosphatidylserine decarboxyla	2e-40
PRK00723	297	PRK00723, PRK00723, phosphatidylserine decarboxyla	3e-21
pfam02666	201	pfam02666, PS_Dcarbxylase, Phosphatidylserine deca	1e-12
PRK03140	259	PRK03140, PRK03140, phosphatidylserine decarboxyla	2e-12
COG0688	239	COG0688, Psd, Phosphatidylserine decarboxylase [Li	4e-09
TIGR00163	238	TIGR00163, PS_decarb, phosphatidylserine decarboxy	1e-06
PRK00044	288	PRK00044, psd, phosphatidylserine decarboxylase; R	2e-06
PRK03934	265	PRK03934, PRK03934, phosphatidylserine decarboxyla	9e-05

>gnl|CDD|215520 PLN02964, PLN02964, phosphatidylserine decarboxylase

 Score =  139 bits (352), Expect = 2e-40
 Identities = 56/84 (66%), Positives = 63/84 (75%)

Query: 1   MVGSITFLKNTGDFVKKGDEFGYFSFGGSTVICVFEKDAIQIDKDLLQNSARALETLVSV 60
           MVGSITF+K  GD VKKGDE GYFSFGGSTVICVFEKDAI ID+DLL NS R+LETLVSV
Sbjct: 561 MVGSITFVKKEGDHVKKGDELGYFSFGGSTVICVFEKDAIDIDEDLLANSERSLETLVSV 620

Query: 61  GMRMGVSKKEILQTELPSLEACVI 84
           GM +GVS +   +  L      + 
Sbjct: 621 GMTLGVSTRTFARQVLEKSRPTIR 644

Length = 644

>gnl|CDD|179097 PRK00723, PRK00723, phosphatidylserine decarboxylase; Provisional

 Score = 84.2 bits (209), Expect = 3e-21
 Identities = 36/72 (50%), Positives = 43/72 (59%), Gaps = 4/72 (5%)

Query: 1   MVGSI--TFLKNTGDFVKKGDEFGYFSFGGSTVICVFEKDAIQIDKDLLQNSARALETLV 58
            VGSI  T+  N    VKKGDE GYF FGGSTVI  FEK+ I+ID D+L+ S    ET V
Sbjct: 228 CVGSIIQTYKPNK--KVKKGDEKGYFKFGGSTVILFFEKNKIKIDADILEQSKLGYETKV 285

Query: 59  SVGMRMGVSKKE 70
            +G  +G     
Sbjct: 286 LMGESIGRKFSS 297

Length = 297

>gnl|CDD|217173 pfam02666, PS_Dcarbxylase, Phosphatidylserine decarboxylase

 Score = 59.6 bits (145), Expect = 1e-12
 Identities = 28/66 (42%), Positives = 31/66 (46%), Gaps = 9/66 (13%)

Query: 1   MVGSI-TFLKNTGDFVKKGDEFGYFSFGGSTVICVFEKDAIQIDKDLLQNSARALETLVS 59
            VGSI    K  GD VKKGDE GYF F GSTV+ +F K  I        N        V 
Sbjct: 143 NVGSIVLTFKEEGDEVKKGDELGYFKF-GSTVVLLFPKGKI-------FNFNVKPGQKVK 194

Query: 60  VGMRMG 65
            G  +G
Sbjct: 195 AGETIG 200

This is a family of phosphatidylserine decarboxylases, EC:4.1.1.65. These enzymes catalyze the reaction: Phosphatidyl-L-serine <=> phosphatidylethanolamine + CO2. Phosphatidylserine decarboxylase plays a central role in the biosynthesis of aminophospholipids by converting phosphatidylserine to phosphatidylethanolamine. Length = 201

>gnl|CDD|179544 PRK03140, PRK03140, phosphatidylserine decarboxylase; Provisional

 Score = 60.0 bits (146), Expect = 2e-12
 Identities = 24/45 (53%), Positives = 32/45 (71%), Gaps = 2/45 (4%)

Query: 2   VGSITFLKNTGDFVKKGDEFGYFSFGGSTVICVFEKDAIQIDKDL 46
           V SI  L +  D V+KG+E  YFSF GSTV+ +FEKD I+ D++L
Sbjct: 201 VNSIE-LTHERDTVQKGEEMAYFSF-GSTVVLLFEKDMIEPDQEL 243

Length = 259

>gnl|CDD|223760 COG0688, Psd, Phosphatidylserine decarboxylase [Lipid metabolism]

 Score = 50.4 bits (121), Expect = 4e-09
 Identities = 15/60 (25%), Positives = 26/60 (43%), Gaps = 2/60 (3%)

Query: 1   MVGSITFLKNTGDFVKKGDEFGYFSFG--GSTVICVFEKDAIQIDKDLLQNSARALETLV 58
           +   I      GD VKKG+  G   FG  GSTV+ +F +  + + + ++          +
Sbjct: 180 VARRIVCYVKEGDTVKKGERIGGIRFGSRGSTVLPLFAEPRVAVGERVVAGETVLAGEKL 239

Length = 239

>gnl|CDD|232850 TIGR00163, PS_decarb, phosphatidylserine decarboxylase precursor

 Score = 44.0 bits (104), Expect = 1e-06
 Identities = 19/54 (35%), Positives = 26/54 (48%), Gaps = 7/54 (12%)

Query: 15  VKKGDEFGYFSFGGSTVICVFEKDAIQIDKDLLQNSARALETLVSVGMRMGVSK 68
           + KG+E GYF   GSTVI +FE DA Q+   L           V +G  +   +
Sbjct: 192 LLKGEEMGYFEL-GSTVILLFEADAFQLSAHLAVGQE------VKIGELLAYEE 238

Phosphatidylserine decarboxylase is synthesized as a single chain precursor. Generation of the pyruvoyl active site from a Ser is coupled to cleavage of a Gly-Ser bond between the larger (beta) and smaller (alpha chains). It is an integral membrane protein. A closely related family, possibly also active as phosphatidylserine decarboxylase, falls under model TIGR00164 [Fatty acid and phospholipid metabolism, Biosynthesis]. Length = 238

>gnl|CDD|234591 PRK00044, psd, phosphatidylserine decarboxylase; Reviewed

 Score = 43.3 bits (103), Expect = 2e-06
 Identities = 16/54 (29%), Positives = 25/54 (46%), Gaps = 7/54 (12%)

Query: 16  KKGDEFGYFSFGGSTVICVFEKDAIQIDKDLLQNSARALETLVSVGMRMGVSKK 69
           KKG E G F  G STVI +F    +Q+ + L         ++V +G  +    +
Sbjct: 241 KKGAEMGRFKLG-STVINLFPPGKVQLAEQL------QAGSVVRMGQPLAHITE 287

Length = 288

>gnl|CDD|235177 PRK03934, PRK03934, phosphatidylserine decarboxylase; Provisional

 Score = 38.4 bits (90), Expect = 9e-05
 Identities = 10/30 (33%), Positives = 19/30 (63%), Gaps = 1/30 (3%)

Query: 14  FVKKGDEFGYFSFGGSTVICVFEKDAIQID 43
            +KKG+E G F   GST++   +K +++ +
Sbjct: 221 KLKKGEELGNFEM-GSTIVLFSQKGSLEFN 249

Length = 265

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	86
PLN02964	644	phosphatidylserine decarboxylase	99.88
PRK00723	297	phosphatidylserine decarboxylase; Provisional	99.84
KOG2419	975	consensus Phosphatidylserine decarboxylase [Lipid	99.8
PRK09629	610	bifunctional thiosulfate sulfurtransferase/phospha	99.67
PRK03140	259	phosphatidylserine decarboxylase; Provisional	99.65
PRK00044	288	psd phosphatidylserine decarboxylase; Reviewed	99.64
PLN02938	428	phosphatidylserine decarboxylase	99.64
PTZ00403	353	phosphatidylserine decarboxylase; Provisional	99.63
TIGR00163	238	PS_decarb phosphatidylserine decarboxylase precurs	99.62
PRK03934	265	phosphatidylserine decarboxylase; Provisional	99.59
PF02666	202	PS_Dcarbxylase: Phosphatidylserine decarboxylase;	99.58
TIGR00164	189	PS_decarb_rel phosphatidylserine decarboxylase pre	99.31
PRK05305	206	phosphatidylserine decarboxylase; Provisional	99.16
COG0688	239	Psd Phosphatidylserine decarboxylase [Lipid metabo	99.09
KOG2420	382	consensus Phosphatidylserine decarboxylase [Lipid	98.88
cd06850	67	biotinyl_domain The biotinyl-domain or biotin carb	89.33
PRK08225	70	acetyl-CoA carboxylase biotin carboxyl carrier pro	85.11
PRK05889	71	putative acetyl-CoA carboxylase biotin carboxyl ca	83.38

>PLN02964 phosphatidylserine decarboxylase

Probab=99.88  E-value=2.2e-23  Score=172.75  Aligned_cols=83  Identities=67%  Similarity=1.044  Sum_probs=78.1

Q ss_pred             CcccEEEEeeCCCeeeccceeeeeecCCceEEEEEeCCceeechhhhhcCcccceeeEeccccccccchhhhccCCcchh
Q 034705            1 MVGSITFLKNTGDFVKKGDEFGYFSFGGSTVICVFEKDAIQIDKDLLQNSARALETLVSVGMRMGVSKKEILQTELPSLE   80 (86)
Q Consensus         1 ~VgsI~~~~~~g~~v~KGeElG~F~fGGSTvVllfe~~~i~~~~~l~~~~~~~~et~V~~G~~ig~~~~~~~~~~~~~~~   80 (86)
                      |||||++++++|..++||||+|||+|||||||||||++++.||+|+.+++..++||.|+|||.||+.........+|.++
T Consensus       561 ~VgsI~~~~~~g~~v~KGdE~G~F~fGGSTvVllFe~~~i~~d~dl~~~s~~~~Et~V~~Ge~iG~~~~~~~~~~~~~~~  640 (644)
T PLN02964        561 MVGSITFVKKEGDHVKKGDELGYFSFGGSTVICVFEKDAIDIDEDLLANSERSLETLVSVGMTLGVSTRTFARQVLEKSR  640 (644)
T ss_pred             EeeEEEEEecCCCEEccCcEeeeeecCCceEEEEecCCCcccChhhhhccccccceeEecChhhcccchhhccccccccc
Confidence            69999999999999999999999999999999999999999999999999999999999999999998887777777777


Q ss_pred             hhh
Q 034705           81 ACV   83 (86)
Q Consensus        81 ~~~   83 (86)
                      .|.
T Consensus       641 ~~~  643 (644)
T PLN02964        641 PTI  643 (644)
T ss_pred             cCc
Confidence            764

>PRK00723 phosphatidylserine decarboxylase; Provisional

Probab=99.84  E-value=8.1e-22  Score=150.79  Aligned_cols=67  Identities=51%  Similarity=0.711  Sum_probs=64.3

Q ss_pred             CcccEEEEeeCCCeeeccceeeeeecCCceEEEEEeCCceeechhhhhcCcccceeeEecccccccc
Q 034705            1 MVGSITFLKNTGDFVKKGDEFGYFSFGGSTVICVFEKDAIQIDKDLLQNSARALETLVSVGMRMGVS   67 (86)
Q Consensus         1 ~VgsI~~~~~~g~~v~KGeElG~F~fGGSTvVllfe~~~i~~~~~l~~~~~~~~et~V~~G~~ig~~   67 (86)
                      +||||++++++|..++||||+|+|+|||||||||||+++++|++++..++..+.|+.|+|||.||+.
T Consensus       228 ~VgsI~~~~~~g~~v~KGeE~G~F~fGGSTvvllfe~~~i~~~~~l~~~~~~~~~~~V~~G~~ig~~  294 (297)
T PRK00723        228 CVGSIIQTYKPNKKVKKGDEKGYFKFGGSTVILFFEKNKIKIDADILEQSKLGYETKVLMGESIGRK  294 (297)
T ss_pred             EeeEEEEEecCCCEEecCcCccccccCCCcEEEEEcCCccccChhhhhccccCcccEEEcCHHHhhh
Confidence            5899999999999999999999999999999999999999999999999999999999999999975

>KOG2419 consensus Phosphatidylserine decarboxylase [Lipid transport and metabolism]

Probab=99.80  E-value=1.5e-20  Score=157.21  Aligned_cols=68  Identities=68%  Similarity=1.113  Sum_probs=66.0

Q ss_pred             CcccEEEEeeCCCeeeccceeeeeecCCceEEEEEeCCceeechhhhhcCcccceeeEeccccccccc
Q 034705            1 MVGSITFLKNTGDFVKKGDEFGYFSFGGSTVICVFEKDAIQIDKDLLQNSARALETLVSVGMRMGVSK   68 (86)
Q Consensus         1 ~VgsI~~~~~~g~~v~KGeElG~F~fGGSTvVllfe~~~i~~~~~l~~~~~~~~et~V~~G~~ig~~~   68 (86)
                      |||||.++.+.|..|+||||+|||.|||||||++||++.+.||+||+.|+.+.+||.|+||+.||...
T Consensus       892 MVGSi~lt~kEgd~V~~gdELGYFkFGGSTVI~vfe~n~~~fDeDLl~NS~~~iETLVkvGm~iGv~i  959 (975)
T KOG2419|consen  892 MVGSILLTRKEGDHVKKGDELGYFKFGGSTVICVFEKNNIMFDEDLLKNSSRSIETLVKVGMQIGVSI  959 (975)
T ss_pred             eeeeEEEEeecCcccccccccceEeeCCeeEEEEEcCCcccccHHHHhcchhhHHHHHHHHHhhceec
Confidence            89999999999999999999999999999999999999999999999999999999999999999644

>PRK09629 bifunctional thiosulfate sulfurtransferase/phosphatidylserine decarboxylase; Provisional

Probab=99.67  E-value=3.8e-17  Score=134.49  Aligned_cols=50  Identities=30%  Similarity=0.515  Sum_probs=46.8

Q ss_pred             CCeeeccceeeeeecCCceEEEEEeCCceeechhhhhcCcccceeeEeccccccccc
Q 034705           12 GDFVKKGDEFGYFSFGGSTVICVFEKDAIQIDKDLLQNSARALETLVSVGMRMGVSK   68 (86)
Q Consensus        12 g~~v~KGeElG~F~fGGSTvVllfe~~~i~~~~~l~~~~~~~~et~V~~G~~ig~~~   68 (86)
                      +..++||||||||+| ||||||||++++++|+.++..+++      |||||.||+..
T Consensus       559 ~~~~~kGeE~G~F~~-GSTvvllf~~~~~~~~~~l~~~~~------v~~Gq~lg~~~  608 (610)
T PRK09629        559 PIHLEKGAEMGRFKL-GSTAIVLFGPNQVKWAEQLTAGSK------VQMGQALAVPA  608 (610)
T ss_pred             CceEeecceeeEecc-CCeEEEEecCCceecCccccCCCE------EeechhhCCcc
Confidence            678999999999999 699999999999999999999997      99999999765

>PRK03140 phosphatidylserine decarboxylase; Provisional

Probab=99.65  E-value=1.1e-16  Score=120.16  Aligned_cols=59  Identities=44%  Similarity=0.755  Sum_probs=53.7

Q ss_pred             CcccEEEEeeCCCeeeccceeeeeecCCceEEEEEeCCceeechhhhhcCcccceeeEecccccccc
Q 034705            1 MVGSITFLKNTGDFVKKGDEFGYFSFGGSTVICVFEKDAIQIDKDLLQNSARALETLVSVGMRMGVS   67 (86)
Q Consensus         1 ~VgsI~~~~~~g~~v~KGeElG~F~fGGSTvVllfe~~~i~~~~~l~~~~~~~~et~V~~G~~ig~~   67 (86)
                      +||+|+++ .+|..++||||+|+|+|| |||||+||++.++|+.++.++++      |++||.||..
T Consensus       200 ~Vg~I~~~-~~g~~v~kGee~G~F~fG-Stvvllf~~~~~~~~~~~~~g~~------V~~Ge~ig~~  258 (259)
T PRK03140        200 FVNSIELT-HERDTVQKGEEMAYFSFG-STVVLLFEKDMIEPDQELKSGQE------VRLGEKIGTR  258 (259)
T ss_pred             EeeEEEEe-cCCCEEecCcEeeeeccC-CeEEEEEeCCccccchhhcCCCE------EEcChhhccc
Confidence            58999987 568999999999999995 99999999999999999999887      9999999864

>PRK00044 psd phosphatidylserine decarboxylase; Reviewed

Probab=99.64  E-value=1.4e-16  Score=121.05  Aligned_cols=51  Identities=33%  Similarity=0.511  Sum_probs=46.2

Q ss_pred             CCeeeccceeeeeecCCceEEEEEeCCceeechhhhhcCcccceeeEeccccccccch
Q 034705           12 GDFVKKGDEFGYFSFGGSTVICVFEKDAIQIDKDLLQNSARALETLVSVGMRMGVSKK   69 (86)
Q Consensus        12 g~~v~KGeElG~F~fGGSTvVllfe~~~i~~~~~l~~~~~~~~et~V~~G~~ig~~~~   69 (86)
                      +..++||||+|+|+| ||||||+||++.++|+.++..+++      |++||.||...+
T Consensus       237 ~~~v~kGee~G~F~f-GStVvllfe~~~~~~~~~v~~g~k------V~~Ge~ig~~~~  287 (288)
T PRK00044        237 AITLKKGAEMGRFKL-GSTVINLFPPGKVQLAEQLQAGSV------VRMGQPLAHITE  287 (288)
T ss_pred             CCeEccccEeecccC-CCeEEEEEeCCCceeccccCCCCE------EEcChhhcCccC
Confidence            679999999999999 799999999998889888888887      999999997653

>PLN02938 phosphatidylserine decarboxylase

Probab=99.64  E-value=1.5e-16  Score=127.46  Aligned_cols=50  Identities=34%  Similarity=0.483  Sum_probs=43.9

Q ss_pred             CCeeeccceeeeeecCCceEEEEEeCCc-------------eeechhhhhcCcccceeeEeccccccccc
Q 034705           12 GDFVKKGDEFGYFSFGGSTVICVFEKDA-------------IQIDKDLLQNSARALETLVSVGMRMGVSK   68 (86)
Q Consensus        12 g~~v~KGeElG~F~fGGSTvVllfe~~~-------------i~~~~~l~~~~~~~~et~V~~G~~ig~~~   68 (86)
                      |..++||||||+|+| ||||||+||++.             ..|..++..+++      |||||.||+..
T Consensus       364 g~~l~KGeE~G~F~l-GSTVVLvFEap~~~~~~~~~~~~~~~~~~~~l~~G~~------Vk~Gq~LG~~~  426 (428)
T PLN02938        364 GLCLKKGDEVAVFNL-GSTVVLVFEAPVEVEPLFKVLDQSSSDFRFCVRKGDR------IRVGQALGRWM  426 (428)
T ss_pred             CceeccccEeeeecC-CCeEEEEEeCCcccccccccccccccCccccccCCCE------EEcchhhcccc
Confidence            678999999999999 799999999985             457767888887      99999999754

>PTZ00403 phosphatidylserine decarboxylase; Provisional

Probab=99.63  E-value=2e-16  Score=124.11  Aligned_cols=51  Identities=33%  Similarity=0.550  Sum_probs=44.3

Q ss_pred             CCeeeccceeeeeecCCceEEEEEeCCceeechhhhhcCcccceeeEeccccccccchh
Q 034705           12 GDFVKKGDEFGYFSFGGSTVICVFEKDAIQIDKDLLQNSARALETLVSVGMRMGVSKKE   70 (86)
Q Consensus        12 g~~v~KGeElG~F~fGGSTvVllfe~~~i~~~~~l~~~~~~~~et~V~~G~~ig~~~~~   70 (86)
                      +..++||||+|+|+| |||||||||++. +|+.++..+++      |+|||.||...+.
T Consensus       291 ~~~v~KGeElG~F~~-GSTVVllFe~~~-~~~~~l~~g~~------Vr~Gq~lg~~~~~  341 (353)
T PTZ00403        291 YKSVEVGDEVGEFRM-GSSIVVIFENKK-NFSWNVKPNQT------VSVGQRLGGVGEP  341 (353)
T ss_pred             CCcccccceeeEecc-CCeEEEEEeCCC-cCCcccCCCCE------EEeeeeccccCCC
Confidence            468999999999999 899999999996 66666888887      9999999986643

>TIGR00163 PS_decarb phosphatidylserine decarboxylase precursor

Probab=99.62  E-value=3.9e-16  Score=115.80  Aligned_cols=48  Identities=40%  Similarity=0.623  Sum_probs=45.0

Q ss_pred             CCeeeccceeeeeecCCceEEEEEeCCceeechhhhhcCcccceeeEeccccccc
Q 034705           12 GDFVKKGDEFGYFSFGGSTVICVFEKDAIQIDKDLLQNSARALETLVSVGMRMGV   66 (86)
Q Consensus        12 g~~v~KGeElG~F~fGGSTvVllfe~~~i~~~~~l~~~~~~~~et~V~~G~~ig~   66 (86)
                      |..++||||+|+|+| ||||||+||++.+.|+.++..+++      |++||.||.
T Consensus       189 g~~v~kGee~G~F~f-GStVvllf~~~~~~~~~~v~~g~k------V~~Ge~lg~  236 (238)
T TIGR00163       189 PVKLLKGEEMGYFEL-GSTVILLFEADAFQLSAHLAVGQE------VKIGELLAY  236 (238)
T ss_pred             CceeccccEeeeEcC-CCeEEEEEeCCCcccChhhccCCE------EEcChhhcc
Confidence            789999999999999 799999999998888888999988      999999985

Phosphatidylserine decarboxylase is synthesized as a single chain precursor. Generation of the pyruvoyl active site from a Ser is coupled to cleavage of a Gly-Ser bond between the larger (beta) and smaller (alpha chains). It is an integral membrane protein. A closely related family, possibly also active as phosphatidylserine decarboxylase, falls under model TIGR00164.

>PRK03934 phosphatidylserine decarboxylase; Provisional

Probab=99.59  E-value=1.3e-15  Score=114.73  Aligned_cols=57  Identities=30%  Similarity=0.520  Sum_probs=48.0

Q ss_pred             CcccEEEEee-----------------CCCeeeccceeeeeecCCceEEEEEeCCceeechhhhhcCcccceeeEecccc
Q 034705            1 MVGSITFLKN-----------------TGDFVKKGDEFGYFSFGGSTVICVFEKDAIQIDKDLLQNSARALETLVSVGMR   63 (86)
Q Consensus         1 ~VgsI~~~~~-----------------~g~~v~KGeElG~F~fGGSTvVllfe~~~i~~~~~l~~~~~~~~et~V~~G~~   63 (86)
                      |||||+++..                 ++..++||||+|+|+| ||||||+||+++++|+  +..+++      |++||.
T Consensus       191 ~Vg~I~~~~~~~~~~~~~~r~i~~~~~~~~~v~kGee~G~F~f-GSTVvllf~~~~~~~~--v~~g~~------V~~Ge~  261 (265)
T PRK03934        191 NVGKMRFNFDERIQTNAKARFIQTYEYENLKLKKGEELGNFEM-GSTIVLFSQKGSLEFN--LKAGKS------VKFGES  261 (265)
T ss_pred             EeeEEEEEeccccccCcccCceeeeccCCceEccccEeeEEcc-CCEEEEEEeCCcceEc--cCCCCE------EEcchh
Confidence            5899986532                 3789999999999999 7999999999988876  445665      999999


Q ss_pred             ccc
Q 034705           64 MGV   66 (86)
Q Consensus        64 ig~   66 (86)
                      ||.
T Consensus       262 ig~  264 (265)
T PRK03934        262 IGE  264 (265)
T ss_pred             hcc
Confidence            985

>PF02666 PS_Dcarbxylase: Phosphatidylserine decarboxylase; InterPro: IPR003817 Phosphatidylserine decarboxylase plays a pivotal role in the synthesis of phospholipid by the mitochondria

Probab=99.58  E-value=2.2e-15  Score=108.57  Aligned_cols=57  Identities=46%  Similarity=0.765  Sum_probs=49.2

Q ss_pred             CcccEEEEe--eCCCeeeccceeeeeecCCceEEEEEeCCce-eechhhhhcCcccceeeEeccccccc
Q 034705            1 MVGSITFLK--NTGDFVKKGDEFGYFSFGGSTVICVFEKDAI-QIDKDLLQNSARALETLVSVGMRMGV   66 (86)
Q Consensus         1 ~VgsI~~~~--~~g~~v~KGeElG~F~fGGSTvVllfe~~~i-~~~~~l~~~~~~~~et~V~~G~~ig~   66 (86)
                      +||+|++.+  ++|..++||||+|+|+| ||||+|+||++.+ ++  .+..+++      |++||.|+.
T Consensus       143 ~v~~I~~~~~~~~g~~v~kG~e~G~f~f-GStvvl~f~~~~~~~~--~v~~g~~------V~~Ge~i~~  202 (202)
T PF02666_consen  143 LVGSIVLTVDPKEGDEVKKGEELGYFRF-GSTVVLLFPKDKIFEW--SVKPGQK------VRAGETIGY  202 (202)
T ss_pred             eeceeEEEecccCCCEEecCcEeCEEec-CCeEEEEEeCCCcccc--ccCCCCE------EEeeeEEeC
Confidence            589999998  68999999999999999 8999999999974 43  3556666      999999974

The substrate phosphatidylserine is synthesized extramitochondrially and must be translocated to the mitochondria prior to decarboxylation []. Phosphatidylserine decarboxylases 4.1.1.65 from EC is responsible for conversion of phosphatidylserine to phosphatidylethanolamine and plays a central role in the biosynthesis of aminophospholipids [].; GO: 0004609 phosphatidylserine decarboxylase activity, 0008654 phospholipid biosynthetic process

>TIGR00164 PS_decarb_rel phosphatidylserine decarboxylase precursor-related protein

Probab=99.31  E-value=2.3e-12  Score=92.78  Aligned_cols=54  Identities=22%  Similarity=0.334  Sum_probs=45.4

Q ss_pred             cccEEEEeeCCCeeeccceeeeeecCCceEEEEEeCCceeechhhhhcCcccceeeEecccccc
Q 034705            2 VGSITFLKNTGDFVKKGDEFGYFSFGGSTVICVFEKDAIQIDKDLLQNSARALETLVSVGMRMG   65 (86)
Q Consensus         2 VgsI~~~~~~g~~v~KGeElG~F~fGGSTvVllfe~~~i~~~~~l~~~~~~~~et~V~~G~~ig   65 (86)
                      +++|+...++|..++||||+|+|+| ||||+|+||++ .++  ++..+++      |++||.|.
T Consensus       129 ~~~i~~~~~~g~~v~kGeeiG~f~f-GStv~ll~p~~-~~~--~v~~G~~------V~~G~tli  182 (189)
T TIGR00164       129 ARRIVCYVKEGEKVSRGQRIGMIRF-GSRVDLYLPEN-AQA--QVKVGEK------VTAGETVL  182 (189)
T ss_pred             ccEEEEecCCCCEEecCcEEEEEec-CCeEEEEEcCC-Ccc--ccCCCCE------EEeceEEE
Confidence            4677777788999999999999999 69999999987 344  4778887      99999663

It is unclear whether this protein is a form of phosphatidylserine decarboxylase or is a related enzyme. It is found in Neisseria gonorrhoeae, Mycobacterium tuberculosis, and several archaeal species, all of which lack known phosphatidylserine decarboxylase.

>PRK05305 phosphatidylserine decarboxylase; Provisional

Probab=99.16  E-value=3.6e-11  Score=87.54  Aligned_cols=53  Identities=25%  Similarity=0.347  Sum_probs=44.3

Q ss_pred             cccEEEEeeCCCeeeccceeeeeecCCceEEEEEeCCceeechhhhhcCcccceeeEeccccc
Q 034705            2 VGSITFLKNTGDFVKKGDEFGYFSFGGSTVICVFEKDAIQIDKDLLQNSARALETLVSVGMRM   64 (86)
Q Consensus         2 VgsI~~~~~~g~~v~KGeElG~F~fGGSTvVllfe~~~i~~~~~l~~~~~~~~et~V~~G~~i   64 (86)
                      +++|+...++|..++||||+|+|+| ||||+|+||++ .++  .+..+++      |++||.+
T Consensus       149 ~r~I~~~~~~g~~v~kGe~~G~f~f-GStV~l~~p~~-~~~--~V~~G~k------V~~Getv  201 (206)
T PRK05305        149 ARRIVCYVKEGDEVERGERFGLIRF-GSRVDVYLPLG-TEP--LVSVGQK------VVAGETV  201 (206)
T ss_pred             ccEEEEeCCCCCEEccCcEEeEEec-CCeEEEEEcCC-Ccc--cccCCCE------EEcccEE
Confidence            5677776788999999999999999 69999999998 344  3677887      9999854

>COG0688 Psd Phosphatidylserine decarboxylase [Lipid metabolism]

Probab=99.09  E-value=6.1e-11  Score=88.92  Aligned_cols=58  Identities=29%  Similarity=0.550  Sum_probs=53.6

Q ss_pred             CcccEEEEeeCCCeeeccceeeeeecC--CceEEEEEeCCceeechhhhhcCcccceeeEeccccc
Q 034705            1 MVGSITFLKNTGDFVKKGDEFGYFSFG--GSTVICVFEKDAIQIDKDLLQNSARALETLVSVGMRM   64 (86)
Q Consensus         1 ~VgsI~~~~~~g~~v~KGeElG~F~fG--GSTvVllfe~~~i~~~~~l~~~~~~~~et~V~~G~~i   64 (86)
                      +|+||+...+.|..++|||++|+|+||  |||+|++|+++.+.+++++..++.      |++|+.+
T Consensus       180 ~v~~Iv~~~~~~~~v~~G~~~G~~~fGs~gstvip~~~~~~v~~~~~v~~g~t------v~~~~~~  239 (239)
T COG0688         180 VARRIVCYVKEGDTVKKGERIGGIRFGSRGSTVLPLFAEPRVAVGERVVAGET------VLAGEKL  239 (239)
T ss_pred             eeeEEEEEecCCcEEEhhhhhhhhhhCCcccEEEecCCCceeeeccccccCce------EEeeecC
Confidence            589999999999999999999999998  899999999999999999999988      8888753

>KOG2420 consensus Phosphatidylserine decarboxylase [Lipid transport and metabolism]

Probab=98.88  E-value=2e-09  Score=85.29  Aligned_cols=45  Identities=33%  Similarity=0.547  Sum_probs=39.4

Q ss_pred             CCCeeeccceeeeeecCCceEEEEEeCCc-eeechhhhhcCcccceeeEeccccc
Q 034705           11 TGDFVKKGDEFGYFSFGGSTVICVFEKDA-IQIDKDLLQNSARALETLVSVGMRM   64 (86)
Q Consensus        11 ~g~~v~KGeElG~F~fGGSTvVllfe~~~-i~~~~~l~~~~~~~~et~V~~G~~i   64 (86)
                      .|..+-|||++|.|++ ||||||+||.++ ++||  +..+++      |||||+|
T Consensus       337 eg~p~~kge~~g~f~l-GStivl~feap~~fkf~--~~~gq~------vr~ge~l  382 (382)
T KOG2420|consen  337 EGMPYVKGERVGEFRL-GSTIVLVFEAPKDFKFD--IKAGQK------VRVGESL  382 (382)
T ss_pred             CCceeccccccccEec-CcEEEEEEeCCCcceee--eecCce------eeccccC
Confidence            4568999999999999 799999999875 7775  888998      9999986

>cd06850 biotinyl_domain The biotinyl-domain or biotin carboxyl carrier protein (BCCP) domain is present in all biotin-dependent enzymes, such as acetyl-CoA carboxylase, pyruvate carboxylase, propionyl-CoA carboxylase, methylcrotonyl-CoA carboxylase, geranyl-CoA carboxylase, oxaloacetate decarboxylase, methylmalonyl-CoA decarboxylase, transcarboxylase and urea amidolyase

Probab=89.33  E-value=1.1  Score=25.34  Aligned_cols=24  Identities=25%  Similarity=0.486  Sum_probs=19.6

Q ss_pred             ccE-EEEeeCCCeeeccceeeeeec
Q 034705            3 GSI-TFLKNTGDFVKKGDEFGYFSF   26 (86)
Q Consensus         3 gsI-~~~~~~g~~v~KGeElG~F~f   26 (86)
                      |.+ .+.+++|..+++||.++.-+-
T Consensus         8 G~v~~~~v~~G~~v~~g~~l~~i~~   32 (67)
T cd06850           8 GTVVKVLVKEGDKVEAGQPLAVLEA   32 (67)
T ss_pred             EEEEEEEeCCCCEECCCCEEEEEEc
Confidence            445 367899999999999998764

This domain functions in transferring CO2 from one subsite to another, allowing carboxylation, decarboxylation, or transcarboxylation. During this process, biotin is covalently attached to a specific lysine.

>PRK08225 acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated

Probab=85.11  E-value=1.9  Score=25.64  Aligned_cols=53  Identities=17%  Similarity=0.215  Sum_probs=33.3

Q ss_pred             EEEeeCCCeeeccceeeeeecCCceEEEEEeCC-ce-eechhhhhcCcccceeeEeccccccc
Q 034705            6 TFLKNTGDFVKKGDEFGYFSFGGSTVICVFEKD-AI-QIDKDLLQNSARALETLVSVGMRMGV   66 (86)
Q Consensus         6 ~~~~~~g~~v~KGeElG~F~fGGSTvVllfe~~-~i-~~~~~l~~~~~~~~et~V~~G~~ig~   66 (86)
                      .+.++.|.++++||.++.-+-+=.++-+..+-. .+ ++.  ...++.      |..|+.|+.
T Consensus        14 ~~~v~~G~~V~~g~~l~~ve~~k~~~~v~s~~~G~v~~~~--~~~G~~------V~~g~~l~~   68 (70)
T PRK08225         14 KIVVKVGDTVEEGQDVVILESMKMEIPIVAEEAGTVKKIN--VQEGDF------VNEGDVLLE   68 (70)
T ss_pred             EEEeCCCCEECCCCEEEEEEcCCCcceEeCCCCEEEEEEE--ecCCCE------ECCCCEEEE
Confidence            345789999999999999777443444444432 22 222  333444      888888765

>PRK05889 putative acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Provisional

Probab=83.38  E-value=3.3  Score=24.86  Aligned_cols=57  Identities=18%  Similarity=0.242  Sum_probs=31.4

Q ss_pred             ccE-EEEeeCCCeeeccceeeeeecCCceEEEEEe-CCceeechhhhhcCcccceeeEeccccccc
Q 034705            3 GSI-TFLKNTGDFVKKGDEFGYFSFGGSTVICVFE-KDAIQIDKDLLQNSARALETLVSVGMRMGV   66 (86)
Q Consensus         3 gsI-~~~~~~g~~v~KGeElG~F~fGGSTvVllfe-~~~i~~~~~l~~~~~~~~et~V~~G~~ig~   66 (86)
                      |.| .+.++.|..+++||.+..=+=--.++-+..+ ++.+.. -....++.      |+.|+.|+.
T Consensus        11 G~i~~~~v~~Gd~V~~g~~l~~ve~~K~~~~I~a~~~G~V~~-i~v~~G~~------V~~G~~l~~   69 (71)
T PRK05889         11 ASVLEVVVNEGDQIGKGDTLVLLESMKMEIPVLAEVAGTVSK-VSVSVGDV------IQAGDLIAV   69 (71)
T ss_pred             EEEEEEEeCCCCEECCCCEEEEEEeccceeEEeCCCCEEEEE-EEeCCCCE------ECCCCEEEE
Confidence            444 5567899999999999865542222222222 122211 11233443      777877765

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	86
1z6h_A	72	Biotin/lipoyl attachment protein; solution structu	86.93
2d5d_A	74	Methylmalonyl-COA decarboxylase gamma chain; bioti	81.4

>1z6h_A Biotin/lipoyl attachment protein; solution structure, biosynthetic protein; HET: BTI; NMR {Bacillus subtilis} PDB: 1z7t_A 2b8f_A 2b8g_A*

Probab=86.93  E-value=1.2  Score=25.13  Aligned_cols=56  Identities=14%  Similarity=0.115  Sum_probs=34.1

Q ss_pred             EEEeeCCCeeeccceeeeeecCCceEEEEEeC-CceeechhhhhcCcccceeeEeccccccccc
Q 034705            6 TFLKNTGDFVKKGDEFGYFSFGGSTVICVFEK-DAIQIDKDLLQNSARALETLVSVGMRMGVSK   68 (86)
Q Consensus         6 ~~~~~~g~~v~KGeElG~F~fGGSTvVllfe~-~~i~~~~~l~~~~~~~~et~V~~G~~ig~~~   68 (86)
                      .+.++.|..++|||.+...+-.-...-+-.+- +.+.- -....++.      |..|+.|+...
T Consensus        12 ~~~v~~G~~V~~G~~l~~i~~~~~~~~i~ap~~G~v~~-~~v~~G~~------V~~G~~l~~i~   68 (72)
T 1z6h_A           12 KVHVKAGDQIEKGQEVAILESMKMEIPIVADRSGIVKE-VKKKEGDF------VNEGDVLLELS   68 (72)
T ss_dssp             EECCCTTCEECTTCEEEEEEETTEEEEEECSSCEEEEE-ESSCTTCE------ECTTCEEEEEG
T ss_pred             EEEcCCcCEECCCCEEEEEECCccEEEEECCCCcEEEE-EecCCCCE------ECCCCEEEEEe
Confidence            34568999999999999998733333333332 22221 11334444      88888887654

>2d5d_A Methylmalonyl-COA decarboxylase gamma chain; biotin, BCCP, structural genomics, NPPSFA; 1.55A {Pyrococcus horikoshii} PDB: 2ejf_C* 2ejg_C* 2evb_A

Probab=81.40  E-value=2.3  Score=23.94  Aligned_cols=21  Identities=24%  Similarity=0.289  Sum_probs=18.0

Q ss_pred             EEEeeCCCeeeccceeeeeec
Q 034705            6 TFLKNTGDFVKKGDEFGYFSF   26 (86)
Q Consensus         6 ~~~~~~g~~v~KGeElG~F~f   26 (86)
                      .+.++.|..++|||.+..++-
T Consensus        18 ~~~v~~G~~V~~G~~l~~i~~   38 (74)
T 2d5d_A           18 RVLVRVGDRVRVGQGLLVLEA   38 (74)
T ss_dssp             EECCCTTCEECTTCEEEEEEE
T ss_pred             EEEcCCCCEeCCCCEEEEEec
Confidence            345689999999999999986

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	86
d1qjoa_	80	Lipoyl domain of dihydrolipoamide acetyltransferas	83.5
d1iyua_	79	Lipoyl domain of dihydrolipoamide acetyltransferas	82.87
d1gjxa_	81	Lipoyl domain of dihydrolipoamide acetyltransferas	82.61

>d1qjoa_ b.84.1.1 (A:) Lipoyl domain of dihydrolipoamide acetyltransferase {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Lipoyl domain of dihydrolipoamide acetyltransferase
species: Escherichia coli [TaxId: 562]

Probab=83.50  E-value=0.66  Score=26.70  Aligned_cols=56  Identities=9%  Similarity=0.043  Sum_probs=36.2

Q ss_pred             EEEeeCCCeeeccceeeeeecCCceEEEEEeC-CceeechhhhhcCcccceeeEeccccccccc
Q 034705            6 TFLKNTGDFVKKGDEFGYFSFGGSTVICVFEK-DAIQIDKDLLQNSARALETLVSVGMRMGVSK   68 (86)
Q Consensus         6 ~~~~~~g~~v~KGeElG~F~fGGSTvVllfe~-~~i~~~~~l~~~~~~~~et~V~~G~~ig~~~   68 (86)
                      .|.+++|..+++||.+-..+----++-+-.+. +.+. .-....++.      |+.|+.|+...
T Consensus        19 ~~~v~~Gd~V~~g~~l~~iEt~K~~~~v~a~~~G~v~-~i~v~~G~~------V~~G~~l~~ie   75 (80)
T d1qjoa_          19 EVMVKVGDKVAAEQSLITVEGDKASMEVPAPFAGVVK-ELKVNVGDK------VKTGSLIMIFE   75 (80)
T ss_dssp             ECCCCTTCEECBTSEEEEEESSSSCEEEEBSSCEEEE-ECCCCTTCE------ECTTCCCEEEE
T ss_pred             EEEeCCCCEECCCCEEEEEEcCcccceEeCCeeEEEE-EEEeCCCCE------ECCCCEEEEEe
Confidence            44579999999999998888744444443332 2332 112345665      99999998764

>d1iyua_ b.84.1.1 (A:) Lipoyl domain of dihydrolipoamide acetyltransferase {Azotobacter vinelandii [TaxId: 354]}

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Lipoyl domain of dihydrolipoamide acetyltransferase
species: Azotobacter vinelandii [TaxId: 354]

Probab=82.87  E-value=0.85  Score=26.12  Aligned_cols=57  Identities=11%  Similarity=0.113  Sum_probs=38.4

Q ss_pred             EEEeeCCCeeeccceeeeeecCCceEEEEEeC-CceeechhhhhcCcccceeeEeccccccccch
Q 034705            6 TFLKNTGDFVKKGDEFGYFSFGGSTVICVFEK-DAIQIDKDLLQNSARALETLVSVGMRMGVSKK   69 (86)
Q Consensus         6 ~~~~~~g~~v~KGeElG~F~fGGSTvVllfe~-~~i~~~~~l~~~~~~~~et~V~~G~~ig~~~~   69 (86)
                      .|.+++|..+++||.+-.-+=-.+++-+-.+. +.+. .-....++.      |..|+.|+....
T Consensus        17 ~~~v~~Gd~V~~gd~l~~iE~~K~~~~i~a~~~G~v~-~i~v~~G~~------V~~G~~l~~ie~   74 (79)
T d1iyua_          17 ELLVKTGDLIEVEQGLVVLESAKASMEVPSPKAGVVK-SVSVKLGDK------LKEGDAIIELEP   74 (79)
T ss_dssp             EECCCTTCBCCSSSEEEEEECSSCEEEEECSSSSEEE-EESCCTTCE------EETTSEEEEEEC
T ss_pred             EEEecCCCEEecCceEEEEEecCcEEEEEeccccEEE-EEeeCCCCE------ECCCCEEEEEec
Confidence            56689999999999999888755555544432 3332 112345665      999999987643

>d1gjxa_ b.84.1.1 (A:) Lipoyl domain of dihydrolipoamide acetyltransferase {Neisseria meningitidis [TaxId: 487]}

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Lipoyl domain of dihydrolipoamide acetyltransferase
species: Neisseria meningitidis [TaxId: 487]

Probab=82.61  E-value=0.51  Score=27.27  Aligned_cols=56  Identities=16%  Similarity=0.125  Sum_probs=36.1

Q ss_pred             EEEeeCCCeeeccceeeeeecCCceEEEEEeC-CceeechhhhhcCcccceeeEeccccccccc
Q 034705            6 TFLKNTGDFVKKGDEFGYFSFGGSTVICVFEK-DAIQIDKDLLQNSARALETLVSVGMRMGVSK   68 (86)
Q Consensus         6 ~~~~~~g~~v~KGeElG~F~fGGSTvVllfe~-~~i~~~~~l~~~~~~~~et~V~~G~~ig~~~   68 (86)
                      .|.+++|..+++||.+-..+-.-.++-+-.+. +.+. .-....++.      |+.|+.|+...
T Consensus        20 ~w~v~~Gd~V~~gd~l~~iEt~K~~~~i~a~~~G~i~-~i~v~~G~~------v~~G~~l~~ie   76 (81)
T d1gjxa_          20 AVEVNVGDTIAVDDTLITLETDKATMDVPAEVAGVVK-EVKVKVGDK------ISEGGLIVVVE   76 (81)
T ss_dssp             EECCCSSCBCCSSCCCEEEECSSCEEEECCCCSSBBC-CCCCCSSCE------ECSSSCCCEEC
T ss_pred             EEEeCCCCEECCCCEEEEEEcCCcEEEEEeeeeEEEE-EEEeCCCCE------ECCCCEEEEEe
Confidence            56689999999999999988854444332221 2221 111334554      99999998764