Citrus Sinensis ID: 034746
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in the Non-Redundant Database Detected by BLAST 
Original result of BLAST against Nonredundant Database
GI ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 85 | ||||||
| 255541508 | 88 | conserved hypothetical protein [Ricinus | 0.976 | 0.943 | 0.891 | 3e-38 | |
| 297745210 | 185 | unnamed protein product [Vitis vinifera] | 0.976 | 0.448 | 0.858 | 3e-36 | |
| 225454085 | 83 | PREDICTED: uncharacterized protein LOC10 | 0.976 | 1.0 | 0.858 | 1e-34 | |
| 225470690 | 80 | PREDICTED: uncharacterized protein LOC10 | 0.941 | 1.0 | 0.835 | 1e-34 | |
| 224063995 | 91 | predicted protein [Populus trichocarpa] | 0.882 | 0.824 | 0.92 | 2e-34 | |
| 18411380 | 88 | uncharacterized protein [Arabidopsis tha | 0.964 | 0.931 | 0.809 | 5e-33 | |
| 224127574 | 91 | predicted protein [Populus trichocarpa] | 0.823 | 0.769 | 0.914 | 1e-31 | |
| 449464700 | 83 | PREDICTED: uncharacterized protein LOC10 | 0.823 | 0.843 | 0.928 | 2e-31 | |
| 326488111 | 83 | predicted protein [Hordeum vulgare subsp | 0.976 | 1.0 | 0.788 | 3e-31 | |
| 356568346 | 88 | PREDICTED: uncharacterized protein LOC10 | 0.811 | 0.784 | 0.913 | 2e-30 |
| >gi|255541508|ref|XP_002511818.1| conserved hypothetical protein [Ricinus communis] gi|223548998|gb|EEF50487.1| conserved hypothetical protein [Ricinus communis] | Back alignment and taxonomy information |
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Score = 162 bits (410), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 74/83 (89%), Positives = 78/83 (93%)
Query: 3 GADHGHAGEGAHRDFRAKVWSMPGGPNCRPKHWKRNTAIAMAGIFLICIPIAMKSAELEQ 62
G DHGH EGAH DFRAKVWSMPGGP CRPKHW+RNTAIAMAG+FL+CIPIAMKSAELEQ
Sbjct: 2 GGDHGHGAEGAHGDFRAKVWSMPGGPYCRPKHWRRNTAIAMAGLFLVCIPIAMKSAELEQ 61
Query: 63 RPHHPVRPIPSQLWCKNFGTKDY 85
RPHHPVRPIPSQLWCKNFG+KDY
Sbjct: 62 RPHHPVRPIPSQLWCKNFGSKDY 84
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Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297745210|emb|CBI40290.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
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| >gi|225454085|ref|XP_002266610.1| PREDICTED: uncharacterized protein LOC100263631 isoform 1 [Vitis vinifera] gi|359489597|ref|XP_003633948.1| PREDICTED: uncharacterized protein LOC100263631 isoform 2 [Vitis vinifera] gi|147863419|emb|CAN83614.1| hypothetical protein VITISV_007756 [Vitis vinifera] | Back alignment and taxonomy information |
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| >gi|225470690|ref|XP_002262805.1| PREDICTED: uncharacterized protein LOC100258376 [Vitis vinifera] | Back alignment and taxonomy information |
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| >gi|224063995|ref|XP_002301339.1| predicted protein [Populus trichocarpa] gi|118489365|gb|ABK96487.1| unknown [Populus trichocarpa x Populus deltoides] gi|222843065|gb|EEE80612.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
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| >gi|18411380|ref|NP_567180.1| uncharacterized protein [Arabidopsis thaliana] gi|17380736|gb|AAL36198.1| unknown protein [Arabidopsis thaliana] gi|20258925|gb|AAM14178.1| unknown protein [Arabidopsis thaliana] gi|26452418|dbj|BAC43294.1| unknown protein [Arabidopsis thaliana] gi|332656505|gb|AEE81905.1| uncharacterized protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
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| >gi|224127574|ref|XP_002320108.1| predicted protein [Populus trichocarpa] gi|118483711|gb|ABK93749.1| unknown [Populus trichocarpa] gi|222860881|gb|EEE98423.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
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| >gi|449464700|ref|XP_004150067.1| PREDICTED: uncharacterized protein LOC101205849 [Cucumis sativus] gi|449516171|ref|XP_004165121.1| PREDICTED: uncharacterized LOC101205849 [Cucumis sativus] | Back alignment and taxonomy information |
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| >gi|326488111|dbj|BAJ89894.1| predicted protein [Hordeum vulgare subsp. vulgare] | Back alignment and taxonomy information |
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| >gi|356568346|ref|XP_003552372.1| PREDICTED: uncharacterized protein LOC100795291 [Glycine max] | Back alignment and taxonomy information |
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Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST 
Original result of BLAST against Gene Ontology (AMIGO)
ID ![]() |
Alignment graph ![]() |
Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 85 | ||||||
| TAIR|locus:505006419 | 88 | AT4G00585 "AT4G00585" [Arabido | 0.811 | 0.784 | 0.855 | 2.6e-31 |
| TAIR|locus:505006419 AT4G00585 "AT4G00585" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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Score = 344 (126.2 bits), Expect = 2.6e-31, P = 2.6e-31
Identities = 59/69 (85%), Positives = 64/69 (92%)
Query: 16 DFRAKVWSMPGGPNCRPKHWKRNTAIAMAGIFLICIPIAMKSAELEQRPHHPVRPIPSQL 75
DFRAKVWSM GGPNCRPKHW+RNTAIAM G+FL+CIPIA SA+LEQRPH PVRPIPSQ+
Sbjct: 14 DFRAKVWSMTGGPNCRPKHWRRNTAIAMFGVFLVCIPIAKLSAKLEQRPHMPVRPIPSQI 73
Query: 76 WCKNFGTKD 84
WCKNFGTKD
Sbjct: 74 WCKNFGTKD 82
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.326 0.139 0.494 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 85 72 0.00091 102 3 12 22 0.46 28
29 0.43 29
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 1
No. of states in DFA: 474 (50 KB)
Total size of DFA: 89 KB (2067 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 7.26u 0.13s 7.39t Elapsed: 00:00:00
Total cpu time: 7.26u 0.13s 7.39t Elapsed: 00:00:00
Start: Fri May 10 00:21:03 2013 End: Fri May 10 00:21:03 2013
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Ezypred Server 
Original result from Ezypred Server
Fail to connect to Ezypred Server
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING 
Original result from the STRING server
| GSVIVG00009205001 | SubName- Full=Chromosome undetermined scaffold_225, whole genome shotgun sequence; (80 aa) | ||||||||||
(Vitis vinifera) | |||||||||||
| GSVIVG00035362001 | • | • | 0.507 | ||||||||
| GSVIVG00008632001 | • | 0.419 |
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against CDD database part I
Conserved Domains Detected by HHsearch 
Original result of HHsearch against CDD database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 85 | |||
| PF12273 | 130 | RCR: Chitin synthesis regulation, resistance to Co | 80.21 |
| >PF12273 RCR: Chitin synthesis regulation, resistance to Congo red; InterPro: IPR020999 RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls | Back alignment and domain information |
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Probab=80.21 E-value=2.2 Score=29.03 Aligned_cols=32 Identities=22% Similarity=0.325 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHhhhcccccCCCCCC---CCC
Q 034746 40 AIAMAGIFLICIPIAMKSAELEQRPHHPV---RPI 71 (85)
Q Consensus 40 ai~~v~i~~~~~~~~~~Sa~~E~R~~~P~---r~i 71 (85)
+|++++|++++++++.++++|-+|-..|. +|+
T Consensus 6 ~iii~~i~l~~~~~~~~~rRR~r~G~~P~~gt~w~ 40 (130)
T PF12273_consen 6 AIIIVAILLFLFLFYCHNRRRRRRGLQPIYGTRWM 40 (130)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCCCcCCceec
Confidence 34455555556666667777776634444 666
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Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall []. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5 []. |
Homologous Structure Templates
Structure Templates Detected by BLAST 
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST 
Original result of RPS-BLAST against PDB70 database
No hit with e-value below 0.005
Structure Templates Detected by HHsearch 
Original result of HHsearch against PDB70 database
No hit with probability above 80.00
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against SCOP70(version1.75) database
No hit with e-value below 0.005
Homologous Domains Detected by HHsearch 
Original result of HHsearch against SCOP70(version1.75) database
No hit with probability above 80.00