Citrus Sinensis ID: 034751

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80-----
Protein Sequence
MISVLAQERLLGFALGSAITGFVVFEQRKCIYGSISDHQSHDEIKSQTREPIFARKTRSEFAHLWNKAVDQTFGPVIESFSSRGW
Secondary Structure (PSIPRED)
cHHHHHHHHHHHHHHHHHHHHHEEEEEHHHHHHHcccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHccccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHcccc
Coil and Loop (DISEMBL)
MISVLAQERLLGFALGSAITGFVVFEQRKCiygsisdhqshdeiksqtrepifARKTRSEFAHLWNKAvdqtfgpviesfssrgw
Flexible Loop (DISEMBL)
MISVLAQERLLGFALGSAITGFVVFEQRKCIYGsisdhqshdeiksqtrePIFARKTRSEFAHLWNkavdqtfgpviesfssrgw
Low Complexity Region (SEG)
MISVLAQERLLGFALGSAITGFVVFEQRKCIYGSISDHQSHDEIKSQTREPIFARKTRSEFAHLWNKAVDQTFGPVIESFSSRGW
Disordered region (IsUnstruct)
****LAQERLLGFALGSAITGFVVFEQRKCIYGSI*****************FARKTRSEFAHLWNKAVDQTFGPVI********
Disordered Region (DISOPRED)
**SVLAQERLLGFALGSAITGFVVFEQRKCIYG**********************KTRSEFAHLWNKAVDQTFGPVIESFSSRG*
Disordered Region (DISEMBL)
MISVLAQERLLGFALGSAITGFVVFEQRKCIYGSIS**********QTREPIFARKTRSEFAHLWNKAVDQTFGPVIESFSSRGW
Disordered Region (DISPRO)
MISVLAQERLLGFALGSAITGFVVFEQRKCIYGSISDH*S*DEI*S*TREPIFARKTRSEFAHLWNKAVDQTFGPVIESFS****
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MISVLAQERLLGFALGSAITGFVVFEQRKCIYGSISDHQSHDEIKSQTREPIFARKTRSEFAHLWNKAVDQTFGPVIESFSSRGW
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	85
225435317	85	PREDICTED: uncharacterized protein LOC10	1.0	1.0	0.694	4e-27
297822427	85	hypothetical protein ARALYDRAFT_901664 [	1.0	1.0	0.670	2e-24
449470380	84	PREDICTED: uncharacterized protein LOC10	0.988	1.0	0.647	4e-24
18401736	85	uncharacterized protein [Arabidopsis tha	1.0	1.0	0.635	1e-23
255578856	84	conserved hypothetical protein [Ricinus	0.964	0.976	0.650	1e-22
356542517	87	PREDICTED: uncharacterized protein LOC10	0.929	0.908	0.670	5e-21
356539438	79	PREDICTED: uncharacterized protein LOC10	0.929	1.0	0.670	8e-21
356539440	103	PREDICTED: uncharacterized protein LOC10	1.0	0.825	0.553	4e-18
195623722	83	hypothetical protein [Zea mays]	0.952	0.975	0.505	2e-14
326505876	116	predicted protein [Hordeum vulgare subsp	0.988	0.724	0.511	2e-14

>gi|225435317|ref|XP_002285144.1| PREDICTED: uncharacterized protein LOC100263969 [Vitis vinifera] gi|297746256|emb|CBI16312.3| unnamed protein product [Vitis vinifera]

 Score =  125 bits (313), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 59/85 (69%), Positives = 67/85 (78%)

Query: 1  MISVLAQERLLGFALGSAITGFVVFEQRKCIYGSISDHQSHDEIKSQTREPIFARKTRSE 60
          MISVLAQERLLG ALGS  TG +VFEQRKCIY SI+D QS  + +S   EPIF +K+R E
Sbjct: 1  MISVLAQERLLGAALGSIFTGVIVFEQRKCIYKSIADTQSQLDPQSLKTEPIFGKKSRLE 60

Query: 61 FAHLWNKAVDQTFGPVIESFSSRGW 85
          FAHLWNK VD+T GPVI + SSRGW
Sbjct: 61 FAHLWNKTVDKTLGPVIAALSSRGW 85

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297822427|ref|XP_002879096.1| hypothetical protein ARALYDRAFT_901664 [Arabidopsis lyrata subsp. lyrata] gi|297324935|gb|EFH55355.1| hypothetical protein ARALYDRAFT_901664 [Arabidopsis lyrata subsp. lyrata]

 Score =  116 bits (290), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 57/85 (67%), Positives = 66/85 (77%)

Query: 1  MISVLAQERLLGFALGSAITGFVVFEQRKCIYGSISDHQSHDEIKSQTREPIFARKTRSE 60
          MIS+LAQERLLGF LG+A+TGFVVFEQRK I+ S+SD +S    +SQ R+ IF +K R E
Sbjct: 1  MISILAQERLLGFTLGTALTGFVVFEQRKLIHESVSDPKSQFVDQSQVRDRIFGKKYRME 60

Query: 61 FAHLWNKAVDQTFGPVIESFSSRGW 85
          FA LWNKAVDQTF P IE  SSR W
Sbjct: 61 FASLWNKAVDQTFEPAIEYLSSRKW 85

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449470380|ref|XP_004152895.1| PREDICTED: uncharacterized protein LOC101206005 [Cucumis sativus] gi|449505894|ref|XP_004162597.1| PREDICTED: uncharacterized LOC101206005 [Cucumis sativus]

 Score =  115 bits (288), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 55/85 (64%), Positives = 66/85 (77%), Gaps = 1/85 (1%)

Query: 1  MISVLAQERLLGFALGSAITGFVVFEQRKCIYGSISDHQSHDEIKSQTREPIFARKTRSE 60
          MISVLAQERLLGFALGS   G VVFEQRK +Y SIS++      +S  R+P+ A+K   E
Sbjct: 1  MISVLAQERLLGFALGSVFAGVVVFEQRKSLYQSISENYP-PATQSPMRKPVLAKKYGPE 59

Query: 61 FAHLWNKAVDQTFGPVIESFSSRGW 85
          F+HLWN+AVDQTFGPVI++ SSRGW
Sbjct: 60 FSHLWNRAVDQTFGPVIQALSSRGW 84

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18401736|ref|NP_029430.1| uncharacterized protein [Arabidopsis thaliana] gi|4432834|gb|AAD20683.1| expressed protein [Arabidopsis thaliana] gi|16648716|gb|AAL25550.1| At2g28430/T1B3.5 [Arabidopsis thaliana] gi|20334920|gb|AAM16216.1| At2g28430/T1B3.5 [Arabidopsis thaliana] gi|330253028|gb|AEC08122.1| uncharacterized protein [Arabidopsis thaliana]

 Score =  114 bits (284), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 54/85 (63%), Positives = 65/85 (76%)

Query: 1  MISVLAQERLLGFALGSAITGFVVFEQRKCIYGSISDHQSHDEIKSQTREPIFARKTRSE 60
          MIS+LAQERLLG+ LGSA+TGF+VFEQRK I+ S+SD +S    ++Q  + IF +K R E
Sbjct: 1  MISILAQERLLGYTLGSALTGFIVFEQRKLIHDSVSDPKSQSIDQAQVSDRIFGKKYRME 60

Query: 61 FAHLWNKAVDQTFGPVIESFSSRGW 85
          FA LWNKAVDQTF P IE  SSR W
Sbjct: 61 FASLWNKAVDQTFEPAIEYLSSRKW 85

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255578856|ref|XP_002530282.1| conserved hypothetical protein [Ricinus communis] gi|223530180|gb|EEF32089.1| conserved hypothetical protein [Ricinus communis]

 Score =  110 bits (275), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 54/83 (65%), Positives = 67/83 (80%), Gaps = 1/83 (1%)

Query: 1  MISVLAQERLLGFALGSAITGFVVFEQRKCIYGSISDHQSHDEIKSQTREPIFARKTRSE 60
          MIS+LAQERLLG A+GSA+ GF+VFEQRK IY SISD+ S  +I  Q +EPIF ++ RS+
Sbjct: 1  MISILAQERLLGAAMGSALAGFLVFEQRKRIYESISDYPSQSDIH-QLKEPIFGKQFRSQ 59

Query: 61 FAHLWNKAVDQTFGPVIESFSSR 83
          FA LWNKAVD+TF PV+ S +SR
Sbjct: 60 FALLWNKAVDETFRPVVASLNSR 82

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356542517|ref|XP_003539713.1| PREDICTED: uncharacterized protein LOC100787578 [Glycine max]

 Score =  105 bits (261), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 57/85 (67%), Positives = 68/85 (80%), Gaps = 6/85 (7%)

Query: 1  MISVLAQERLLGFALGSAITGFVVFEQRKCIYGSISDHQSHDEIKSQTREPIFARKTRSE 60
          MIS+L+QERLLG +LG  +TG VVFEQR+ IY SISD QS      Q +EPIF +K+RSE
Sbjct: 1  MISILSQERLLGASLGVVLTGVVVFEQRRYIYASISDSQS------QVKEPIFGKKSRSE 54

Query: 61 FAHLWNKAVDQTFGPVIESFSSRGW 85
          F+HLWNK VDQTFGP+I+S SSRGW
Sbjct: 55 FSHLWNKTVDQTFGPLIKSLSSRGW 79

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356539438|ref|XP_003538205.1| PREDICTED: uncharacterized protein LOC100306159 isoform 1 [Glycine max] gi|255627729|gb|ACU14209.1| unknown [Glycine max]

 Score =  104 bits (259), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 57/85 (67%), Positives = 67/85 (78%), Gaps = 6/85 (7%)

Query: 1  MISVLAQERLLGFALGSAITGFVVFEQRKCIYGSISDHQSHDEIKSQTREPIFARKTRSE 60
          MIS+L QERLLG +LG  +TG VVFEQR+ IY SISD QS      Q +EPIF +K+RSE
Sbjct: 1  MISILTQERLLGASLGVVLTGVVVFEQRRYIYASISDSQS------QVKEPIFGKKSRSE 54

Query: 61 FAHLWNKAVDQTFGPVIESFSSRGW 85
          FAH+WNK VDQTFGP+I+S SSRGW
Sbjct: 55 FAHVWNKTVDQTFGPLIKSLSSRGW 79

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356539440|ref|XP_003538206.1| PREDICTED: uncharacterized protein LOC100306159 isoform 2 [Glycine max]

 Score = 95.1 bits (235), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 57/103 (55%), Positives = 67/103 (65%), Gaps = 18/103 (17%)

Query: 1   MISVLAQERLLGFALGSAITGFVVFEQRKCIYGSISDHQSHDEI---------------- 44
           MIS+L QERLLG +LG  +TG VVFEQR+ IY SISD QS   I                
Sbjct: 1   MISILTQERLLGASLGVVLTGVVVFEQRRYIYASISDSQSQLVILPHFTAWEGFKMRDGI 60

Query: 45  --KSQTREPIFARKTRSEFAHLWNKAVDQTFGPVIESFSSRGW 85
                 +EPIF +K+RSEFAH+WNK VDQTFGP+I+S SSRGW
Sbjct: 61  VHHVHVKEPIFGKKSRSEFAHVWNKTVDQTFGPLIKSLSSRGW 103

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|195623722|gb|ACG33691.1| hypothetical protein [Zea mays]

 Score = 83.2 bits (204), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 44/87 (50%), Positives = 56/87 (64%), Gaps = 6/87 (6%)

Query: 1  MISVLAQERLLGFALGSAITGFVVFEQRKCIYGSISDHQSHDEIKSQTREP--IFARKTR 58
          MIS+LAQERLLGFALGS   G  V  QR+ IY SI++        S   +P  I  R++ 
Sbjct: 1  MISILAQERLLGFALGSVSMGGFVLHQRRAIYRSIAEADG----SSYFYQPGEIAGRRSS 56

Query: 59 SEFAHLWNKAVDQTFGPVIESFSSRGW 85
          +E AH+WNKAVD+T G ++   SSRGW
Sbjct: 57 TELAHVWNKAVDETLGKLVVYLSSRGW 83

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|326505876|dbj|BAJ91177.1| predicted protein [Hordeum vulgare subsp. vulgare]

 Score = 83.2 bits (204), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 45/88 (51%), Positives = 56/88 (63%), Gaps = 4/88 (4%)

Query: 1   MISVLAQERLLGFALGSAITGFVVFEQRKCIYGSISDHQSHDEIKS---QTREPIFARKT 57
           MIS+LAQERLLGFALGS   G  V  QR+ IY S++D+ +     S   QT E    R  
Sbjct: 30  MISILAQERLLGFALGSVSMGGFVLHQRRSIYRSLADNDAVSGGASFSYQTSETT-GRGV 88

Query: 58  RSEFAHLWNKAVDQTFGPVIESFSSRGW 85
            +E AH+WNKAVD+T G ++   SSRGW
Sbjct: 89  SAEMAHVWNKAVDETLGRLVVYLSSRGW 116

Source: Hordeum vulgare subsp. vulgare

Species: Hordeum vulgare

Genus: Hordeum

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	85
TAIR|locus:2057512	85	AT2G28430 "AT2G28430" [Arabido	1.0	1.0	0.635	8.7e-24

TAIR|locus:2057512 AT2G28430 "AT2G28430" [Arabidopsis thaliana (taxid:3702)]

 Score = 273 (101.2 bits), Expect = 8.7e-24, P = 8.7e-24
 Identities = 54/85 (63%), Positives = 65/85 (76%)

Query:     1 MISVLAQERLLGFALGSAITGFVVFEQRKCIYGSISDHQSHDEIKSQTREPIFARKTRSE 60
             MIS+LAQERLLG+ LGSA+TGF+VFEQRK I+ S+SD +S    ++Q  + IF +K R E
Sbjct:     1 MISILAQERLLGYTLGSALTGFIVFEQRKLIHDSVSDPKSQSIDQAQVSDRIFGKKYRME 60

Query:    61 FAHLWNKAVDQTFGPVIESFSSRGW 85
             FA LWNKAVDQTF P IE  SSR W
Sbjct:    61 FASLWNKAVDQTFEPAIEYLSSRKW 85


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.322   0.134   0.405    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0       85        85   0.00091  102 3  11 22  0.40    29
                                                     29  0.46    30


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  537 (57 KB)
  Total size of DFA:  103 KB (2071 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  8.93u 0.12s 9.05t   Elapsed:  00:00:00
  Total cpu time:  8.93u 0.12s 9.05t   Elapsed:  00:00:00
  Start:  Fri May 10 00:25:13 2013   End:  Fri May 10 00:25:13 2013

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

GO:0009536 "plastid" evidence=IDA

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Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	scaffold_401165.1	annotation not avaliable (85 aa)
		(Arabidopsis lyrata)
Predicted Functional Partners:
	fgenesh1_pm.C_scaffold_2000919	annotation not avaliable (75 aa)				•			•		0.405

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	85
PF11830	56	DUF3350: Domain of unknown function (DUF3350); Int	81.3

>PF11830 DUF3350: Domain of unknown function (DUF3350); InterPro: IPR021785 This domain is functionally uncharacterised

Probab=81.30  E-value=1.3  Score=28.30  Aligned_cols=20  Identities=40%  Similarity=0.818  Sum_probs=18.4

Q ss_pred             hhhhhhHHHHHHHHHHHhhH
Q 034751           54 ARKTRSEFAHLWNKAVDQTF   73 (85)
Q Consensus        54 gk~~r~e~a~~WNk~VD~tf   73 (85)
                      .|+++.|+..+|.||+.|+.
T Consensus        24 ~krt~eelR~LWrkAI~QqI   43 (56)
T PF11830_consen   24 KKRTREELRELWRKAIHQQI   43 (56)
T ss_pred             cccCHHHHHHHHHHHHHHHH
Confidence            78999999999999999874

This domain is found in eukaryotes. This presumed domain is typically between 50 to 64 amino acids in length.

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00