Citrus Sinensis ID: 034780

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80----
Protein Sequence
MAANNPMGVDKEQAFGMAETEMEYRVELFNRLAQTCFNKCVDKRYKESELNMGENSCIDRCVSKYWQVNSMIGQLLSAGGRPPM
Secondary Structure (PSIPRED)
ccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccc
Secondary Structure Prediction (SSPRO)
ccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccc
Coil and Loop (DISEMBL)
maannpmgvdkeqAFGMAETEMEYRVELFNRLAQTCFNKCVDKRYkeselnmgenscidrCVSKYWQVNSMIGQLlsaggrppm
Flexible Loop (DISEMBL)
maannpmgvdkeqafGMAETEMEYRVELFNRLAQTCFNKCVDKRYKeselnmgensCIDRCVSKYWQVNSMIGqllsaggrppm
Low Complexity Region (SEG)
MAANNPMGVDKEQAFGMAETEMEYRVELFNRLAQTCFNKCVDKRYKESELNMGENSCIDRCVSKYWQVNSMIGQLLSAGGRPPM
Disordered region (IsUnstruct)
*******************TEMEYRVELFNRLAQTCFNKCVDKRYKESELNMGENSCIDRCVSKYWQVNSMIGQLL********
Disordered Region (DISOPRED)
*******************TEMEYRVELFNRLAQTCFNKCVDKRYKESELNMGENSCIDRCVSKYWQVNSMIGQL*********
Disordered Region (DISEMBL)
********VDKEQAFGMAETEMEYRVELFNRLAQTCFNKCVDKRYKESELNMGENSCIDRCVSKYWQVNSMIGQLLSAGGRPPM
Disordered Region (DISPRO)
********VDKEQAFGMAETEMEYRVELFNRLAQTCFNKCVDKRYKESELNMGENSCIDRCVSKYWQVNSMIGQLLSAG*****
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MAANNPMGVDKEQAFGMAETEMEYRVELFNRLAQTCFNKCVDKRYKESELNMGENSCIDRCVSKYWQVNSMIGQLLSAGGRPPM
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	84	2.2.26 [Sep-21-2011]
Q9ZW33	83	Mitochondrial import inne	yes	no	0.988	1.0	0.833	3e-36
Q9UTE9	89	Mitochondrial import inne	yes	no	0.821	0.775	0.449	1e-12
Q6C6U1	140	Mitochondrial import inne	no	no	0.892	0.535	0.373	8e-12
Q9Y8A8	93	Mitochondrial import inne	yes	no	0.75	0.677	0.444	1e-11
Q9W2D6	92	Mitochondrial import inne	yes	no	0.928	0.847	0.423	1e-11
P87108	93	Mitochondrial import inne	yes	no	0.880	0.795	0.364	2e-11
Q4WJX5	93	Mitochondrial import inne	yes	no	0.821	0.741	0.405	4e-11
P62074	90	Mitochondrial import inne	yes	no	0.714	0.666	0.45	7e-11
P62073	90	Mitochondrial import inne	yes	no	0.714	0.666	0.45	7e-11
P62072	90	Mitochondrial import inne	yes	no	0.714	0.666	0.45	7e-11

>sp|Q9ZW33|TIM10_ARATH Mitochondrial import inner membrane translocase subunit TIM10 OS=Arabidopsis thaliana GN=TIM10 PE=1 SV=1

 Score =  149 bits (377), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 70/84 (83%), Positives = 78/84 (92%), Gaps = 1/84 (1%)

Query: 1  MAANNPMGVDKEQAFGMAETEMEYRVELFNRLAQTCFNKCVDKRYKESELNMGENSCIDR 60
          MA+  P+GV KEQAF MA+TEMEYRVELFN+LAQTCFNKCVDKRYKE+ELNMGENSCIDR
Sbjct: 1  MASPIPVGVTKEQAFSMAQTEMEYRVELFNKLAQTCFNKCVDKRYKEAELNMGENSCIDR 60

Query: 61 CVSKYWQVNSMIGQLLSAGGRPPM 84
          CVSKYWQVN M+GQLLSA G+PP+
Sbjct: 61 CVSKYWQVNGMVGQLLSA-GKPPV 83

Mitochondrial intermembrane chaperone that participates in the import and insertion of multi-pass transmembrane proteins into the mitochondrial inner membrane. May also be required for the transfer of beta-barrel precursors from the TOM complex to the sorting and assembly machinery (SAM complex) of the outer membrane. Acts as a chaperone-like protein that protects the hydrophobic precursors from aggregation and guide them through the mitochondrial intermembrane space.
Arabidopsis thaliana (taxid: 3702)

>sp|Q9UTE9|TIM10_SCHPO Mitochondrial import inner membrane translocase subunit tim10 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=tim10 PE=3 SV=1

 Score = 71.6 bits (174), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 31/69 (44%), Positives = 44/69 (63%)

Query: 13 QAFGMAETEMEYRVELFNRLAQTCFNKCVDKRYKESELNMGENSCIDRCVSKYWQVNSMI 72
          Q   MAE E+E   ++FNRL  TC  KC+  +Y E++L  GE+ CIDRCVSKY++ N  +
Sbjct: 16 QNIAMAEQEVEMMSDIFNRLVMTCHKKCISPKYYEADLTKGESVCIDRCVSKYFEANQSL 75

Query: 73 GQLLSAGGR 81
           Q +   G+
Sbjct: 76 SQHMQKRGQ 84

Mitochondrial intermembrane chaperone that participates in the import and insertion of multi-pass transmembrane proteins into the mitochondrial inner membrane. Also required for the transfer of beta-barrel precursors from the TOM complex to the sorting and assembly machinery (SAM complex) of the outer membrane. Acts as a chaperone-like protein that protects the hydrophobic precursors from aggregation and guide them through the mitochondrial intermembrane space.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|Q6C6U1|TIM10_YARLI Mitochondrial import inner membrane translocase subunit TIM10 OS=Yarrowia lipolytica (strain CLIB 122 / E 150) GN=TIM10 PE=3 SV=1

 Score = 68.9 bits (167), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 28/75 (37%), Positives = 44/75 (58%)

Query: 1  MAANNPMGVDKEQAFGMAETEMEYRVELFNRLAQTCFNKCVDKRYKESELNMGENSCIDR 60
          +   NP G    Q    AE E++   ++FNRL ++C  KC+   Y   +LN  E  C+DR
Sbjct: 6  LGGQNPNGPSNPQKLLAAEAELDMVTDMFNRLVESCHEKCIKADYSSGDLNANEGLCLDR 65

Query: 61 CVSKYWQVNSMIGQL 75
          CV+KY+ VN+ +G++
Sbjct: 66 CVAKYFDVNTKVGEV 80

Mitochondrial intermembrane chaperone that participates in the import and insertion of multi-pass transmembrane proteins into the mitochondrial inner membrane. Also required for the transfer of beta-barrel precursors from the TOM complex to the sorting and assembly machinery (SAM complex) of the outer membrane. Acts as a chaperone-like protein that protects the hydrophobic precursors from aggregation and guide them through the mitochondrial intermembrane space.

Yarrowia lipolytica (strain CLIB 122 / E 150) (taxid: 284591)

>sp|Q9Y8A8|TIM10_EMENI Mitochondrial import inner membrane translocase subunit tim10 OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) GN=tim10 PE=3 SV=1

 Score = 68.6 bits (166), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 28/63 (44%), Positives = 44/63 (69%)

Query: 12 EQAFGMAETEMEYRVELFNRLAQTCFNKCVDKRYKESELNMGENSCIDRCVSKYWQVNSM 71
          EQ    AETE+E   ++FNRL+++C  KC+   Y+E +LN GE+ C+DRCV K+++VN  
Sbjct: 14 EQKIAAAETEVEMITDMFNRLSESCSKKCIPNDYREGDLNKGESVCLDRCVGKFFEVNIK 73

Query: 72 IGQ 74
          + +
Sbjct: 74 VSE 76

Mitochondrial intermembrane chaperone that participates in the import and insertion of multi-pass transmembrane proteins into the mitochondrial inner membrane. Also required for the transfer of beta-barrel precursors from the TOM complex to the sorting and assembly machinery (SAM complex) of the outer membrane. Acts as a chaperone-like protein that protects the hydrophobic precursors from aggregation and guide them through the mitochondrial intermembrane space.

Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) (taxid: 227321)

>sp|Q9W2D6|TIM10_DROME Mitochondrial import inner membrane translocase subunit Tim10 OS=Drosophila melanogaster GN=Tim10 PE=3 SV=1

 Score = 68.2 bits (165), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 33/78 (42%), Positives = 45/78 (57%)

Query: 1  MAANNPMGVDKEQAFGMAETEMEYRVELFNRLAQTCFNKCVDKRYKESELNMGENSCIDR 60
          MA       D+ +   M E E+E   +L+NR+   C  KC+  RY ESEL  GE  CIDR
Sbjct: 1  MALPQISTADQAKLQLMQEMEIEMMSDLYNRMTNACHKKCIPPRYSESELGKGEMVCIDR 60

Query: 61 CVSKYWQVNSMIGQLLSA 78
          CV+KY  ++  IG+ L+A
Sbjct: 61 CVAKYLDIHEKIGKKLTA 78

Mitochondrial intermembrane chaperone that participates in the import and insertion of multi-pass transmembrane proteins into the mitochondrial inner membrane. May also be required for the transfer of beta-barrel precursors from the TOM complex to the sorting and assembly machinery (SAM complex) of the outer membrane. Acts as a chaperone-like protein that protects the hydrophobic precursors from aggregation and guide them through the mitochondrial intermembrane space.

Drosophila melanogaster (taxid: 7227)

>sp|P87108|TIM10_YEAST Mitochondrial import inner membrane translocase subunit TIM10 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TIM10 PE=1 SV=1

 Score = 67.8 bits (164), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 27/74 (36%), Positives = 46/74 (62%)

Query: 9  VDKEQAFGMAETEMEYRVELFNRLAQTCFNKCVDKRYKESELNMGENSCIDRCVSKYWQV 68
          +  +Q    AE E++   ++FN+L   C+ KC++  Y E ELN  E+SC+DRCV+KY++ 
Sbjct: 13 LSSQQKIQAAEAELDLVTDMFNKLVNNCYKKCINTSYSEGELNKNESSCLDRCVAKYFET 72

Query: 69 NSMIGQLLSAGGRP 82
          N  +G+ +   G+ 
Sbjct: 73 NVQVGENMQKMGQS 86

Mitochondrial intermembrane chaperone that participates in the import and insertion of multi-pass transmembrane proteins into the mitochondrial inner membrane. Also required for the transfer of beta-barrel precursors from the TOM complex to the sorting and assembly machinery (SAM complex) of the outer membrane. Acts as a chaperone-like protein that protects the hydrophobic precursors from aggregation and guide them through the mitochondrial intermembrane space. Compared to TIM9, it may function as a substrate sensor.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

>sp|Q4WJX5|TIM10_ASPFU Mitochondrial import inner membrane translocase subunit tim10 OS=Neosartorya fumigata (strain ATCC MYA-4609 / Af293 / CBS 101355 / FGSC A1100) GN=tim10 PE=3 SV=1

 Score = 66.6 bits (161), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 28/69 (40%), Positives = 45/69 (65%)

Query: 6  PMGVDKEQAFGMAETEMEYRVELFNRLAQTCFNKCVDKRYKESELNMGENSCIDRCVSKY 65
          P  +   +    AETE+E   ++FNRL ++C  KC+   Y+E +LN GE+ C+DRCVSK+
Sbjct: 8  PPKMSSAEKIAAAETEVEMVSDMFNRLTESCQKKCIPNDYREGDLNKGESVCLDRCVSKF 67

Query: 66 WQVNSMIGQ 74
          ++VN  + +
Sbjct: 68 FEVNIKVSE 76

Mitochondrial intermembrane chaperone that participates in the import and insertion of multi-pass transmembrane proteins into the mitochondrial inner membrane. Also required for the transfer of beta-barrel precursors from the TOM complex to the sorting and assembly machinery (SAM complex) of the outer membrane. Acts as a chaperone-like protein that protects the hydrophobic precursors from aggregation and guide them through the mitochondrial intermembrane space.

Neosartorya fumigata (strain ATCC MYA-4609 / Af293 / CBS 101355 / FGSC A1100) (taxid: 330879)

>sp|P62074|TIM10_RAT Mitochondrial import inner membrane translocase subunit Tim10 OS=Rattus norvegicus GN=Timm10 PE=3 SV=1

 Score = 65.9 bits (159), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 27/60 (45%), Positives = 41/60 (68%)

Query: 18 AETEMEYRVELFNRLAQTCFNKCVDKRYKESELNMGENSCIDRCVSKYWQVNSMIGQLLS 77
          AE E+E   +++NR+   C  KCV   YKE+EL+ GE+ C+DRCVSKY  ++  +G+ L+
Sbjct: 11 AELEVEMMADMYNRMTSACHRKCVPPHYKEAELSKGESVCLDRCVSKYLDIHERMGKKLT 70

Mitochondrial intermembrane chaperone that participates in the import and insertion of multi-pass transmembrane proteins into the mitochondrial inner membrane. May also be required for the transfer of beta-barrel precursors from the TOM complex to the sorting and assembly machinery (SAM complex) of the outer membrane. Acts as a chaperone-like protein that protects the hydrophobic precursors from aggregation and guide them through the mitochondrial intermembrane space.

Rattus norvegicus (taxid: 10116)

>sp|P62073|TIM10_MOUSE Mitochondrial import inner membrane translocase subunit Tim10 OS=Mus musculus GN=Timm10 PE=1 SV=1

 Score = 65.9 bits (159), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 27/60 (45%), Positives = 41/60 (68%)

Query: 18 AETEMEYRVELFNRLAQTCFNKCVDKRYKESELNMGENSCIDRCVSKYWQVNSMIGQLLS 77
          AE E+E   +++NR+   C  KCV   YKE+EL+ GE+ C+DRCVSKY  ++  +G+ L+
Sbjct: 11 AELEVEMMADMYNRMTSACHRKCVPPHYKEAELSKGESVCLDRCVSKYLDIHERMGKKLT 70

Mitochondrial intermembrane chaperone that participates in the import and insertion of multi-pass transmembrane proteins into the mitochondrial inner membrane. May also be required for the transfer of beta-barrel precursors from the TOM complex to the sorting and assembly machinery (SAM complex) of the outer membrane. Acts as a chaperone-like protein that protects the hydrophobic precursors from aggregation and guide them through the mitochondrial intermembrane space.

Mus musculus (taxid: 10090)

>sp|P62072|TIM10_HUMAN Mitochondrial import inner membrane translocase subunit Tim10 OS=Homo sapiens GN=TIMM10 PE=1 SV=1

 Score = 65.9 bits (159), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 27/60 (45%), Positives = 41/60 (68%)

Query: 18 AETEMEYRVELFNRLAQTCFNKCVDKRYKESELNMGENSCIDRCVSKYWQVNSMIGQLLS 77
          AE E+E   +++NR+   C  KCV   YKE+EL+ GE+ C+DRCVSKY  ++  +G+ L+
Sbjct: 11 AELEVEMMADMYNRMTSACHRKCVPPHYKEAELSKGESVCLDRCVSKYLDIHERMGKKLT 70

Mitochondrial intermembrane chaperone that participates in the import and insertion of multi-pass transmembrane proteins into the mitochondrial inner membrane. May also be required for the transfer of beta-barrel precursors from the TOM complex to the sorting and assembly machinery (SAM complex) of the outer membrane. Acts as a chaperone-like protein that protects the hydrophobic precursors from aggregation and guide them through the mitochondrial intermembrane space.

Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	84
18402072	83	mitochondrial import inner membrane tran	0.988	1.0	0.833	1e-34
297826347	85	hypothetical protein ARALYDRAFT_901916 [	0.928	0.917	0.860	1e-33
224104353	86	predicted protein [Populus trichocarpa]	0.976	0.953	0.8	4e-33
224054584	86	predicted protein [Populus trichocarpa]	0.976	0.953	0.776	4e-32
449455056	85	PREDICTED: mitochondrial import inner me	0.952	0.941	0.814	6e-32
297745972	84	unnamed protein product [Vitis vinifera]	0.988	0.988	0.788	1e-31
356501739	84	PREDICTED: mitochondrial import inner me	0.988	0.988	0.776	4e-31
356550311	84	PREDICTED: mitochondrial import inner me	0.988	0.988	0.764	9e-31
255558864	103	mitochondrial import inner membrane tran	0.976	0.796	0.785	1e-30
238479394	107	mitochondrial import inner membrane tran	0.988	0.775	0.648	3e-30

>gi|18402072|ref|NP_565682.1| mitochondrial import inner membrane translocase subunit Tim10 [Arabidopsis thaliana] gi|145329981|ref|NP_001077976.1| mitochondrial import inner membrane translocase subunit Tim10 [Arabidopsis thaliana] gi|12230205|sp|Q9ZW33.1|TIM10_ARATH RecName: Full=Mitochondrial import inner membrane translocase subunit TIM10 gi|5107174|gb|AAD39999.1|AF150093_1 small zinc finger-like protein [Arabidopsis thaliana] gi|3980383|gb|AAC95186.1| expressed protein [Arabidopsis thaliana] gi|28466793|gb|AAO44005.1| At2g29530 [Arabidopsis thaliana] gi|110736522|dbj|BAF00228.1| hypothetical protein [Arabidopsis thaliana] gi|330253172|gb|AEC08266.1| mitochondrial import inner membrane translocase subunit Tim10 [Arabidopsis thaliana] gi|330253173|gb|AEC08267.1| mitochondrial import inner membrane translocase subunit Tim10 [Arabidopsis thaliana]

 Score =  149 bits (377), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 70/84 (83%), Positives = 78/84 (92%), Gaps = 1/84 (1%)

Query: 1  MAANNPMGVDKEQAFGMAETEMEYRVELFNRLAQTCFNKCVDKRYKESELNMGENSCIDR 60
          MA+  P+GV KEQAF MA+TEMEYRVELFN+LAQTCFNKCVDKRYKE+ELNMGENSCIDR
Sbjct: 1  MASPIPVGVTKEQAFSMAQTEMEYRVELFNKLAQTCFNKCVDKRYKEAELNMGENSCIDR 60

Query: 61 CVSKYWQVNSMIGQLLSAGGRPPM 84
          CVSKYWQVN M+GQLLSA G+PP+
Sbjct: 61 CVSKYWQVNGMVGQLLSA-GKPPV 83

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297826347|ref|XP_002881056.1| hypothetical protein ARALYDRAFT_901916 [Arabidopsis lyrata subsp. lyrata] gi|297326895|gb|EFH57315.1| hypothetical protein ARALYDRAFT_901916 [Arabidopsis lyrata subsp. lyrata]

 Score =  147 bits (370), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 68/79 (86%), Positives = 74/79 (93%), Gaps = 1/79 (1%)

Query: 6  PMGVDKEQAFGMAETEMEYRVELFNRLAQTCFNKCVDKRYKESELNMGENSCIDRCVSKY 65
          P GV KEQAF MA+TEMEYRVELFN+LAQTCFNKCVDKRYKE+ELNMGENSCIDRCVSKY
Sbjct: 8  PAGVTKEQAFSMAQTEMEYRVELFNKLAQTCFNKCVDKRYKEAELNMGENSCIDRCVSKY 67

Query: 66 WQVNSMIGQLLSAGGRPPM 84
          WQVN M+GQLLSA G+PP+
Sbjct: 68 WQVNGMVGQLLSA-GKPPV 85

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224104353|ref|XP_002313409.1| predicted protein [Populus trichocarpa] gi|118482859|gb|ABK93344.1| unknown [Populus trichocarpa] gi|118483310|gb|ABK93557.1| unknown [Populus trichocarpa] gi|118487450|gb|ABK95553.1| unknown [Populus trichocarpa] gi|222849817|gb|EEE87364.1| predicted protein [Populus trichocarpa]

 Score =  145 bits (365), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 68/85 (80%), Positives = 75/85 (88%), Gaps = 3/85 (3%)

Query: 1  MAANN---PMGVDKEQAFGMAETEMEYRVELFNRLAQTCFNKCVDKRYKESELNMGENSC 57
          MAANN   P GV KEQA+GMAETEMEYRVELFNRL  TCFNKC+DKR+KE+ELNMGENSC
Sbjct: 1  MAANNVGLPAGVSKEQAYGMAETEMEYRVELFNRLLNTCFNKCIDKRHKEAELNMGENSC 60

Query: 58 IDRCVSKYWQVNSMIGQLLSAGGRP 82
          +DRCVSKYW VN +IGQ+LSAG RP
Sbjct: 61 VDRCVSKYWAVNGIIGQMLSAGQRP 85

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224054584|ref|XP_002298333.1| predicted protein [Populus trichocarpa] gi|118483829|gb|ABK93806.1| unknown [Populus trichocarpa] gi|222845591|gb|EEE83138.1| predicted protein [Populus trichocarpa]

 Score =  141 bits (356), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 66/85 (77%), Positives = 74/85 (87%), Gaps = 3/85 (3%)

Query: 1  MAANN---PMGVDKEQAFGMAETEMEYRVELFNRLAQTCFNKCVDKRYKESELNMGENSC 57
          MAANN   P GV KEQA+GMA TEMEYRVELFNRL  TCFNKC+DKR+K++ELNMGENSC
Sbjct: 1  MAANNVGLPAGVSKEQAYGMAATEMEYRVELFNRLLNTCFNKCIDKRHKDAELNMGENSC 60

Query: 58 IDRCVSKYWQVNSMIGQLLSAGGRP 82
          +DRCVSKYW VN +IGQ+LSAG RP
Sbjct: 61 VDRCVSKYWAVNGIIGQMLSAGQRP 85

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449455056|ref|XP_004145269.1| PREDICTED: mitochondrial import inner membrane translocase subunit Tim10-like [Cucumis sativus] gi|449472902|ref|XP_004153729.1| PREDICTED: mitochondrial import inner membrane translocase subunit Tim10-like [Cucumis sativus] gi|449516240|ref|XP_004165155.1| PREDICTED: mitochondrial import inner membrane translocase subunit Tim10-like [Cucumis sativus]

 Score =  141 bits (355), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 66/81 (81%), Positives = 71/81 (87%), Gaps = 1/81 (1%)

Query: 4  NNPMGVDKEQAFGMAETEMEYRVELFNRLAQTCFNKCVDKRYKESELNMGENSCIDRCVS 63
          N P  VDKEQ FGMAE EMEYRVELFN+L Q+CFNKCVDKRYKESELNMGENSCIDRCVS
Sbjct: 6  NMPSAVDKEQIFGMAEKEMEYRVELFNKLTQSCFNKCVDKRYKESELNMGENSCIDRCVS 65

Query: 64 KYWQVNSMIGQLLSAGGRPPM 84
          KYW V ++IGQLL + GRPPM
Sbjct: 66 KYWHVTNLIGQLLGS-GRPPM 85

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297745972|emb|CBI16028.3| unnamed protein product [Vitis vinifera]

 Score =  140 bits (352), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 67/85 (78%), Positives = 74/85 (87%), Gaps = 2/85 (2%)

Query: 1  MAANN-PMGVDKEQAFGMAETEMEYRVELFNRLAQTCFNKCVDKRYKESELNMGENSCID 59
          MAANN P  +DKEQ FGMAE EMEYRVELFN+L  TCFNKC++KRYKESELNMGENSCID
Sbjct: 1  MAANNQPGALDKEQIFGMAEKEMEYRVELFNKLTHTCFNKCIEKRYKESELNMGENSCID 60

Query: 60 RCVSKYWQVNSMIGQLLSAGGRPPM 84
          RCVSKYWQV ++IGQLL +  RPPM
Sbjct: 61 RCVSKYWQVTNLIGQLLGS-NRPPM 84

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356501739|ref|XP_003519681.1| PREDICTED: mitochondrial import inner membrane translocase subunit Tim10 [Glycine max] gi|255629950|gb|ACU15327.1| unknown [Glycine max]

 Score =  138 bits (348), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 66/85 (77%), Positives = 73/85 (85%), Gaps = 2/85 (2%)

Query: 1  MAAN-NPMGVDKEQAFGMAETEMEYRVELFNRLAQTCFNKCVDKRYKESELNMGENSCID 59
          MA+N +P   DKEQ FGMAE EMEYRVELFN++ QTCFNKCVD RYKESELNMGENSCID
Sbjct: 1  MASNISPSAFDKEQIFGMAEKEMEYRVELFNKMTQTCFNKCVDNRYKESELNMGENSCID 60

Query: 60 RCVSKYWQVNSMIGQLLSAGGRPPM 84
          RCVSKYW V ++IGQLL + GRPPM
Sbjct: 61 RCVSKYWHVTNLIGQLLGS-GRPPM 84

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356550311|ref|XP_003543531.1| PREDICTED: mitochondrial import inner membrane translocase subunit Tim10-like [Glycine max]

 Score =  137 bits (345), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 65/85 (76%), Positives = 73/85 (85%), Gaps = 2/85 (2%)

Query: 1  MAAN-NPMGVDKEQAFGMAETEMEYRVELFNRLAQTCFNKCVDKRYKESELNMGENSCID 59
          MA+N +P  +DKEQ FGMAE EMEYRVELFN++ QTCF KCVD RYKESELNMGENSCID
Sbjct: 1  MASNISPSALDKEQIFGMAEKEMEYRVELFNKMTQTCFKKCVDNRYKESELNMGENSCID 60

Query: 60 RCVSKYWQVNSMIGQLLSAGGRPPM 84
          RCVSKYW V ++IGQLL + GRPPM
Sbjct: 61 RCVSKYWHVTNLIGQLLGS-GRPPM 84

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255558864|ref|XP_002520455.1| mitochondrial import inner membrane translocase subunit tim10, putative [Ricinus communis] gi|223540297|gb|EEF41868.1| mitochondrial import inner membrane translocase subunit tim10, putative [Ricinus communis]

 Score =  137 bits (344), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 66/84 (78%), Positives = 71/84 (84%), Gaps = 2/84 (2%)

Query: 1   MAANN--PMGVDKEQAFGMAETEMEYRVELFNRLAQTCFNKCVDKRYKESELNMGENSCI 58
           MAANN  P G+DKEQ  GM   EMEY+VELFNRLA TCFNKCVDKRYKE ELNMGENSCI
Sbjct: 19  MAANNEIPAGLDKEQVLGMLGMEMEYKVELFNRLAMTCFNKCVDKRYKEPELNMGENSCI 78

Query: 59  DRCVSKYWQVNSMIGQLLSAGGRP 82
           DRCVSKY+ VN +IGQ+LSAG RP
Sbjct: 79  DRCVSKYFLVNGIIGQMLSAGQRP 102

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|238479394|ref|NP_001154540.1| mitochondrial import inner membrane translocase subunit Tim10 [Arabidopsis thaliana] gi|330253174|gb|AEC08268.1| mitochondrial import inner membrane translocase subunit Tim10 [Arabidopsis thaliana]

 Score =  135 bits (341), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 70/108 (64%), Positives = 77/108 (71%), Gaps = 25/108 (23%)

Query: 1   MAANNPMGVDKEQAFGMAETEMEYRVELFNR------------------------LAQTC 36
           MA+  P+GV KEQAF MA+TEMEYRVELFN                         LAQTC
Sbjct: 1   MASPIPVGVTKEQAFSMAQTEMEYRVELFNNDIYKLEEYKFETADMSKILRLPELLAQTC 60

Query: 37  FNKCVDKRYKESELNMGENSCIDRCVSKYWQVNSMIGQLLSAGGRPPM 84
           FNKCVDKRYKE+ELNMGENSCIDRCVSKYWQVN M+GQLLSA G+PP+
Sbjct: 61  FNKCVDKRYKEAELNMGENSCIDRCVSKYWQVNGMVGQLLSA-GKPPV 107

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	84
TAIR|locus:2043097	107	TIM10 "AT2G29530" [Arabidopsis	0.928	0.728	0.666	7.8e-23
POMBASE|SPAC222.03c	89	tim10 "Tim9-Tim10 complex subu	0.821	0.775	0.449	1.6e-13
ASPGD|ASPL0000051968	93	AN0429 [Emericella nidulans (t	0.785	0.709	0.424	3.4e-13
SGD|S000003530	93	TIM10 "Essential protein of th	0.869	0.784	0.369	4.4e-13
FB|FBgn0027360	92	Tim10 "Translocase of inner me	0.738	0.673	0.483	2.4e-12
UNIPROTKB|Q2NKR1	90	TIMM10 "Mitochondrial import i	0.714	0.666	0.45	6.4e-12
UNIPROTKB|E2R236	90	TIMM10 "Uncharacterized protei	0.714	0.666	0.45	6.4e-12
UNIPROTKB|P62072	90	TIMM10 "Mitochondrial import i	0.714	0.666	0.45	6.4e-12
MGI|MGI:1353429	90	Timm10 "translocase of inner m	0.714	0.666	0.45	6.4e-12
RGD|621741	90	Timm10 "translocase of inner m	0.714	0.666	0.45	6.4e-12

TAIR|locus:2043097 TIM10 "AT2G29530" [Arabidopsis thaliana (taxid:3702)]

 Score = 264 (98.0 bits), Expect = 7.8e-23, P = 7.8e-23
 Identities = 54/81 (66%), Positives = 62/81 (76%)

Query:     4 NNPMGVDKEQAFGMAETEMEYRVELFNRLAQTCFNKCVDKRYKESELNMGENSCIDRCVS 63
             NN +   +E  F  A+  M   + L   LAQTCFNKCVDKRYKE+ELNMGENSCIDRCVS
Sbjct:    30 NNDIYKLEEYKFETAD--MSKILRLPELLAQTCFNKCVDKRYKEAELNMGENSCIDRCVS 87

Query:    64 KYWQVNSMIGQLLSAGGRPPM 84
             KYWQVN M+GQLLSAG +PP+
Sbjct:    88 KYWQVNGMVGQLLSAG-KPPV 107

GO:0005743 "mitochondrial inner membrane" evidence=ISS

GO:0006626 "protein targeting to mitochondrion" evidence=IEA;ISS

GO:0009507 "chloroplast" evidence=ISM

GO:0015450 "P-P-bond-hydrolysis-driven protein transmembrane transporter activity" evidence=ISS

GO:0042719 "mitochondrial intermembrane space protein transporter complex" evidence=IEA

GO:0045039 "protein import into mitochondrial inner membrane" evidence=IEA

GO:0005739 "mitochondrion" evidence=IDA

GO:0005758 "mitochondrial intermembrane space" evidence=IDA

GO:0001510 "RNA methylation" evidence=RCA

GO:0009853 "photorespiration" evidence=RCA

POMBASE|SPAC222.03c tim10 "Tim9-Tim10 complex subunit Tim10 (predicted)" [Schizosaccharomyces pombe (taxid:4896)]

 Score = 176 (67.0 bits), Expect = 1.6e-13, P = 1.6e-13
 Identities = 31/69 (44%), Positives = 44/69 (63%)

Query:    13 QAFGMAETEMEYRVELFNRLAQTCFNKCVDKRYKESELNMGENSCIDRCVSKYWQVNSMI 72
             Q   MAE E+E   ++FNRL  TC  KC+  +Y E++L  GE+ CIDRCVSKY++ N  +
Sbjct:    16 QNIAMAEQEVEMMSDIFNRLVMTCHKKCISPKYYEADLTKGESVCIDRCVSKYFEANQSL 75

Query:    73 GQLLSAGGR 81
              Q +   G+
Sbjct:    76 SQHMQKRGQ 84

GO:0005634 "nucleus" evidence=IDA

GO:0005743 "mitochondrial inner membrane" evidence=IEA

GO:0005758 "mitochondrial intermembrane space" evidence=ISS

GO:0005829 "cytosol" evidence=IDA

GO:0042719 "mitochondrial intermembrane space protein transporter complex" evidence=ISS

GO:0045039 "protein import into mitochondrial inner membrane" evidence=ISS

GO:0046872 "metal ion binding" evidence=IEA

GO:0008565 "protein transporter activity" evidence=ISS

ASPGD|ASPL0000051968 AN0429 [Emericella nidulans (taxid:162425)]

 Score = 173 (66.0 bits), Expect = 3.4e-13, P = 3.4e-13
 Identities = 28/66 (42%), Positives = 45/66 (68%)

Query:     9 VDKEQAFGMAETEMEYRVELFNRLAQTCFNKCVDKRYKESELNMGENSCIDRCVSKYWQV 68
             +  EQ    AETE+E   ++FNRL+++C  KC+   Y+E +LN GE+ C+DRCV K+++V
Sbjct:    11 MSSEQKIAAAETEVEMITDMFNRLSESCSKKCIPNDYREGDLNKGESVCLDRCVGKFFEV 70

Query:    69 NSMIGQ 74
             N  + +
Sbjct:    71 NIKVSE 76

GO:0005634 "nucleus" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0042721 "mitochondrial inner membrane protein insertion complex" evidence=IEA

GO:0042719 "mitochondrial intermembrane space protein transporter complex" evidence=IEA

GO:0008565 "protein transporter activity" evidence=IEA

GO:0051082 "unfolded protein binding" evidence=IEA

GO:0045039 "protein import into mitochondrial inner membrane" evidence=IEA

SGD|S000003530 TIM10 "Essential protein of the mitochondrial intermembrane space" [Saccharomyces cerevisiae (taxid:4932)]

 Score = 172 (65.6 bits), Expect = 4.4e-13, P = 4.4e-13
 Identities = 27/73 (36%), Positives = 46/73 (63%)

Query:     9 VDKEQAFGMAETEMEYRVELFNRLAQTCFNKCVDKRYKESELNMGENSCIDRCVSKYWQV 68
             +  +Q    AE E++   ++FN+L   C+ KC++  Y E ELN  E+SC+DRCV+KY++ 
Sbjct:    13 LSSQQKIQAAEAELDLVTDMFNKLVNNCYKKCINTSYSEGELNKNESSCLDRCVAKYFET 72

Query:    69 NSMIGQLLSAGGR 81
             N  +G+ +   G+
Sbjct:    73 NVQVGENMQKMGQ 85

GO:0005743 "mitochondrial inner membrane" evidence=IEA

GO:0042721 "mitochondrial inner membrane protein insertion complex" evidence=IDA

GO:0016020 "membrane" evidence=IEA

GO:0008565 "protein transporter activity" evidence=IEA;IDA;IMP

GO:0042719 "mitochondrial intermembrane space protein transporter complex" evidence=IEA;IDA

GO:0045039 "protein import into mitochondrial inner membrane" evidence=IEA;IDA;IMP

GO:0005739 "mitochondrion" evidence=IEA;IDA

GO:0006810 "transport" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:0016021 "integral to membrane" evidence=ISM

GO:0051082 "unfolded protein binding" evidence=IDA

GO:0015031 "protein transport" evidence=IEA

FB|FBgn0027360 Tim10 "Translocase of inner membrane 10" [Drosophila melanogaster (taxid:7227)]

 Score = 165 (63.1 bits), Expect = 2.4e-12, P = 2.4e-12
 Identities = 30/62 (48%), Positives = 40/62 (64%)

Query:    17 MAETEMEYRVELFNRLAQTCFNKCVDKRYKESELNMGENSCIDRCVSKYWQVNSMIGQLL 76
             M E E+E   +L+NR+   C  KC+  RY ESEL  GE  CIDRCV+KY  ++  IG+ L
Sbjct:    17 MQEMEIEMMSDLYNRMTNACHKKCIPPRYSESELGKGEMVCIDRCVAKYLDIHEKIGKKL 76

Query:    77 SA 78
             +A
Sbjct:    77 TA 78

GO:0015031 "protein transport" evidence=NAS

GO:0005744 "mitochondrial inner membrane presequence translocase complex" evidence=ISS;NAS

GO:0015450 "P-P-bond-hydrolysis-driven protein transmembrane transporter activity" evidence=ISS;NAS

GO:0006626 "protein targeting to mitochondrion" evidence=ISS

GO:0045039 "protein import into mitochondrial inner membrane" evidence=IEA

UNIPROTKB|Q2NKR1 TIMM10 "Mitochondrial import inner membrane translocase subunit Tim10" [Bos taurus (taxid:9913)]

 Score = 161 (61.7 bits), Expect = 6.4e-12, P = 6.4e-12
 Identities = 27/60 (45%), Positives = 41/60 (68%)

Query:    18 AETEMEYRVELFNRLAQTCFNKCVDKRYKESELNMGENSCIDRCVSKYWQVNSMIGQLLS 77
             AE E+E   +++NR+   C  KCV   YKE+EL+ GE+ C+DRCVSKY  ++  +G+ L+
Sbjct:    11 AELEVEMMADMYNRMTSACHRKCVPPHYKEAELSKGESVCLDRCVSKYLDIHERMGKKLT 70

GO:0005743 "mitochondrial inner membrane" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:0045039 "protein import into mitochondrial inner membrane" evidence=IEA

UNIPROTKB|E2R236 TIMM10 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 161 (61.7 bits), Expect = 6.4e-12, P = 6.4e-12
 Identities = 27/60 (45%), Positives = 41/60 (68%)

Query:    18 AETEMEYRVELFNRLAQTCFNKCVDKRYKESELNMGENSCIDRCVSKYWQVNSMIGQLLS 77
             AE E+E   +++NR+   C  KCV   YKE+EL+ GE+ C+DRCVSKY  ++  +G+ L+
Sbjct:    11 AELEVEMMADMYNRMTSACHRKCVPPHYKEAELSKGESVCLDRCVSKYLDIHERMGKKLT 70

GO:0072321 "chaperone-mediated protein transport" evidence=IEA

GO:0051087 "chaperone binding" evidence=IEA

GO:0045039 "protein import into mitochondrial inner membrane" evidence=IEA

GO:0042803 "protein homodimerization activity" evidence=IEA

GO:0042719 "mitochondrial intermembrane space protein transporter complex" evidence=IEA

GO:0005743 "mitochondrial inner membrane" evidence=IEA

GO:0005215 "transporter activity" evidence=IEA

UNIPROTKB|P62072 TIMM10 "Mitochondrial import inner membrane translocase subunit Tim10" [Homo sapiens (taxid:9606)]

 Score = 161 (61.7 bits), Expect = 6.4e-12, P = 6.4e-12
 Identities = 27/60 (45%), Positives = 41/60 (68%)

Query:    18 AETEMEYRVELFNRLAQTCFNKCVDKRYKESELNMGENSCIDRCVSKYWQVNSMIGQLLS 77
             AE E+E   +++NR+   C  KCV   YKE+EL+ GE+ C+DRCVSKY  ++  +G+ L+
Sbjct:    11 AELEVEMMADMYNRMTSACHRKCVPPHYKEAELSKGESVCLDRCVSKYLDIHERMGKKLT 70

GO:0005744 "mitochondrial inner membrane presequence translocase complex" evidence=TAS

GO:0006626 "protein targeting to mitochondrion" evidence=TAS

GO:0007605 "sensory perception of sound" evidence=TAS

GO:0008270 "zinc ion binding" evidence=TAS

GO:0005743 "mitochondrial inner membrane" evidence=IDA;TAS

GO:0044267 "cellular protein metabolic process" evidence=TAS

GO:0005515 "protein binding" evidence=IPI

GO:0042719 "mitochondrial intermembrane space protein transporter complex" evidence=IDA

GO:0005758 "mitochondrial intermembrane space" evidence=TAS

GO:0045039 "protein import into mitochondrial inner membrane" evidence=ISS;IDA

GO:0005215 "transporter activity" evidence=IDA

GO:0042803 "protein homodimerization activity" evidence=IPI

GO:0051087 "chaperone binding" evidence=IPI

GO:0072321 "chaperone-mediated protein transport" evidence=IDA

GO:0005739 "mitochondrion" evidence=IDA

MGI|MGI:1353429 Timm10 "translocase of inner mitochondrial membrane 10" [Mus musculus (taxid:10090)]

 Score = 161 (61.7 bits), Expect = 6.4e-12, P = 6.4e-12
 Identities = 27/60 (45%), Positives = 41/60 (68%)

Query:    18 AETEMEYRVELFNRLAQTCFNKCVDKRYKESELNMGENSCIDRCVSKYWQVNSMIGQLLS 77
             AE E+E   +++NR+   C  KCV   YKE+EL+ GE+ C+DRCVSKY  ++  +G+ L+
Sbjct:    11 AELEVEMMADMYNRMTSACHRKCVPPHYKEAELSKGESVCLDRCVSKYLDIHERMGKKLT 70

GO:0005215 "transporter activity" evidence=ISO

GO:0005739 "mitochondrion" evidence=IDA

GO:0005743 "mitochondrial inner membrane" evidence=ISO

GO:0006810 "transport" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0042719 "mitochondrial intermembrane space protein transporter complex" evidence=ISO;IDA

GO:0042803 "protein homodimerization activity" evidence=ISO

GO:0045039 "protein import into mitochondrial inner membrane" evidence=ISO;IDA

GO:0046872 "metal ion binding" evidence=IEA

GO:0051087 "chaperone binding" evidence=ISO

GO:0072321 "chaperone-mediated protein transport" evidence=ISO

RGD|621741 Timm10 "translocase of inner mitochondrial membrane 10 homolog (yeast)" [Rattus norvegicus (taxid:10116)]

 Score = 161 (61.7 bits), Expect = 6.4e-12, P = 6.4e-12
 Identities = 27/60 (45%), Positives = 41/60 (68%)

Query:    18 AETEMEYRVELFNRLAQTCFNKCVDKRYKESELNMGENSCIDRCVSKYWQVNSMIGQLLS 77
             AE E+E   +++NR+   C  KCV   YKE+EL+ GE+ C+DRCVSKY  ++  +G+ L+
Sbjct:    11 AELEVEMMADMYNRMTSACHRKCVPPHYKEAELSKGESVCLDRCVSKYLDIHERMGKKLT 70

GO:0005215 "transporter activity" evidence=IEA;ISO

GO:0005739 "mitochondrion" evidence=ISO

GO:0005743 "mitochondrial inner membrane" evidence=IEA;ISO

GO:0042719 "mitochondrial intermembrane space protein transporter complex" evidence=IEA;ISO

GO:0042803 "protein homodimerization activity" evidence=IEA;ISO

GO:0045039 "protein import into mitochondrial inner membrane" evidence=IEA;ISO

GO:0046872 "metal ion binding" evidence=IEA

GO:0051087 "chaperone binding" evidence=IEA;ISO

GO:0072321 "chaperone-mediated protein transport" evidence=IEA;ISO

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9W2D6	TIM10_DROME	No assigned EC number	0.4230	0.9285	0.8478	yes	no
Q759W7	TIM10_ASHGO	No assigned EC number	0.3561	0.8690	0.8202	yes	no
Q9Y0V6	TIM10_CAEEL	No assigned EC number	0.375	0.8452	0.8255	yes	no
Q6BHJ3	TIM10_DEBHA	No assigned EC number	0.3378	0.8809	0.8131	yes	no
Q9ZW33	TIM10_ARATH	No assigned EC number	0.8333	0.9880	1.0	yes	no
Q6CIK7	TIM10_KLULA	No assigned EC number	0.3424	0.8690	0.8202	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	84
pfam02953	66	pfam02953, zf-Tim10_DDP, Tim10/DDP family zinc fin	1e-20

>gnl|CDD|202484 pfam02953, zf-Tim10_DDP, Tim10/DDP family zinc finger

 Score = 76.9 bits (190), Expect = 1e-20
 Identities = 27/66 (40%), Positives = 36/66 (54%), Gaps = 1/66 (1%)

Query: 13 QAFGMAETEMEYRVELFNRLAQTCFNKCVDKRYKESELNMGENSCIDRCVSKYWQVNSMI 72
          Q   M E +     EL N+L + CF KCV K +  S L+ GE SC+DRCV KY   N+ +
Sbjct: 1  QQQLMQELQKANFQELINKLTENCFKKCVTK-FPGSSLSKGEESCLDRCVEKYLDANNRV 59

Query: 73 GQLLSA 78
           + L  
Sbjct: 60 SKRLQE 65

Putative zinc binding domain with four conserved cysteine residues. This domain is found in the human disease protein TIMM8A. Members of this family such as Tim9 and Tim10 are involved in mitochondrial protein import. Members of this family seem to be localised to the mitochondrial intermembrane space. Length = 66

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	84
KOG3489	86	consensus Mitochondrial import inner membrane tran	99.95
PF02953	66	zf-Tim10_DDP: Tim10/DDP family zinc finger; InterP	99.93
KOG3480	90	consensus Mitochondrial import inner membrane tran	99.92
KOG1733	97	consensus Mitochondrial import inner membrane tran	99.87
KOG3479	83	consensus Mitochondrial import inner membrane tran	99.84
PF05811	131	DUF842: Eukaryotic protein of unknown function (DU	94.25
KOG3377	143	consensus Uncharacterized conserved protein [Funct	93.34

>KOG3489 consensus Mitochondrial import inner membrane translocase, subunit TIM8 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.95  E-value=3.9e-27  Score=147.16  Aligned_cols=72  Identities=28%  Similarity=0.522  Sum_probs=68.1

Q ss_pred             CCCCHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCchHhHHHHHHHHHHHHHHHHHHHHHHcCC
Q 034780            7 MGVDKE-QAFGMAETEMEYRVELFNRLAQTCFNKCVDKRYKESELNMGENSCIDRCVSKYWQVNSMIGQLLSAGG   80 (84)
Q Consensus         7 ~~~~~~-q~~~~~~~q~~~~~~l~~~lt~~Cf~kCV~~~~~~~~L~~~E~~Ci~~Cv~k~~~~~~~v~~~l~~~~   80 (84)
                      .+.++| ++|+++|+|.+.|++++|++|+.||+|||.+  ++++||++|++|+.|||+||||++.+|.+||+...
T Consensus         8 ~~~~~el~~fl~~E~qk~k~~~~VHqft~~CWdKCi~~--~~sklds~~e~ClsnCV~RfiDts~~I~~r~~~~~   80 (86)
T KOG3489|consen    8 DANDPELQQFLEAETQKQKFQEQVHQFTEICWDKCIEK--PGSKLDSSEETCLSNCVNRFIDTSLFIVKRLAQMN   80 (86)
T ss_pred             ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC--CcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            667888 9999999999999999999999999999997  67999999999999999999999999999998754

>PF02953 zf-Tim10_DDP: Tim10/DDP family zinc finger; InterPro: IPR004217 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=99.93  E-value=9.8e-26  Score=134.36  Aligned_cols=66  Identities=41%  Similarity=0.713  Sum_probs=59.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCchHhHHHHHHHHHHHHHHHHHHHHHHcC
Q 034780           13 QAFGMAETEMEYRVELFNRLAQTCFNKCVDKRYKESELNMGENSCIDRCVSKYWQVNSMIGQLLSAG   79 (84)
Q Consensus        13 q~~~~~~~q~~~~~~l~~~lt~~Cf~kCV~~~~~~~~L~~~E~~Ci~~Cv~k~~~~~~~v~~~l~~~   79 (84)
                      |+++++++|++.|+.++++|++.||+|||++ |++++|+++|++||+||++||++++.+|+++|+++
T Consensus         1 q~~~~~~~q~~~~~~~~~~~t~~Cf~kCv~~-~~~~~L~~~E~~Ci~~C~~ky~~~~~~v~~~~~~~   66 (66)
T PF02953_consen    1 QQQLMQEQQMKDFQELFNKLTERCFDKCVTK-FPSSSLSSKEESCIDNCVDKYIDTNQFVSKRFQQM   66 (66)
T ss_dssp             TCHHHHHHHHHHHHHHHHHHHHHHHHHHS-T-TSSSS--HHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-CCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence            4578999999999999999999999999997 89999999999999999999999999999999864

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a putative zinc binding domain with four conserved cysteine residues. Members of this family include subunits 8, 9, 10 and 13 of the mitochondrial inner membrane translocase complex, which are involved in mitochondrial protein import [, ]. Defects in TIM8 are the cause of 2 human syndromes: Mohr-Tranebjaerg syndrome (MTS) [MIM:304700]; also known as dystonia-deafness syndrome (DDS) or X-linked progressive deafness type 1 (DFN-1). It is a recessive neurodegenerative syndrome characterised by postlingual progressive sensorineural deafness as the first presenting symptom in early childhood, followed by progressive dystonia, spasticity, dysphagia, mental deterioration, paranoia and cortical blindness. Jensen syndrome [MIM:311150]; also known as opticoacoustic nerve atrophy with dementia. This X-linked disease is characterised by deafness, blindness and muscle weakness. The small alpha helical proteins Tim8 and Tim13 assemble into a hexameric complex which can bind Tim23 as its substrate and chaperone the hydrophobic Tim23 across the aqueous membrane space []. More information on zinc fingers can be found at Protein of the Month: Zinc Fingers [].; GO: 0006626 protein targeting to mitochondrion, 0045039 protein import into mitochondrial inner membrane, 0042719 mitochondrial intermembrane space protein transporter complex; PDB: 2BSK_B 3CJH_A 3DXR_A.

>KOG3480 consensus Mitochondrial import inner membrane translocase, subunits TIM10/TIM12 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.92  E-value=7.9e-25  Score=137.40  Aligned_cols=82  Identities=50%  Similarity=0.850  Sum_probs=77.3

Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCchHhHHHHHHHHHHHHHHHHHHHHHHcCC
Q 034780            1 MAANNPMGVDKEQAFGMAETEMEYRVELFNRLAQTCFNKCVDKRYKESELNMGENSCIDRCVSKYWQVNSMIGQLLSAGG   80 (84)
Q Consensus         1 m~~~~~~~~~~~q~~~~~~~q~~~~~~l~~~lt~~Cf~kCV~~~~~~~~L~~~E~~Ci~~Cv~k~~~~~~~v~~~l~~~~   80 (84)
                      ||.+.|.++++++.. ++++++..+.++||+|+..|++|||+..|..++|+++|.+||||||.||+++|..|+++|++.+
T Consensus         1 ~~~~~~q~~~~~k~q-~Ae~E~emm~d~fNrl~~tC~~KCI~~~y~EaeLtKGE~~CiDRCVaKy~~~n~~vG~~lq~~~   79 (90)
T KOG3480|consen    1 MALPQPQTVDQQKAQ-MAELEVEMMSDMFNRLTNTCHKKCIPPRYKEAELTKGESVCIDRCVAKYLDVNEKVGKKLQAMG   79 (90)
T ss_pred             CCCCcccccCHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhCCcccccccccCchhhHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            677889999999776 9999999999999999999999999988999999999999999999999999999999999988


Q ss_pred             CCC
Q 034780           81 RPP   83 (84)
Q Consensus        81 ~~~   83 (84)
                      +.+
T Consensus        80 ~~~   82 (90)
T KOG3480|consen   80 QGD   82 (90)
T ss_pred             CCc
Confidence            764

>KOG1733 consensus Mitochondrial import inner membrane translocase, subunit TIM13 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.87  E-value=9.5e-22  Score=124.68  Aligned_cols=70  Identities=24%  Similarity=0.591  Sum_probs=60.9

Q ss_pred             CCCCHH-HHHHHHHHHH--HHHHHHHHHHHHHHHHHhhcCCCCCCCCCchHhHHHHHHHHHHHHHHHHHHHHHHc
Q 034780            7 MGVDKE-QAFGMAETEM--EYRVELFNRLAQTCFNKCVDKRYKESELNMGENSCIDRCVSKYWQVNSMIGQLLSA   78 (84)
Q Consensus         7 ~~~~~~-q~~~~~~~q~--~~~~~l~~~lt~~Cf~kCV~~~~~~~~L~~~E~~Ci~~Cv~k~~~~~~~v~~~l~~   78 (84)
                      .+.+++ ..+...++|+  +.+++|+++|+++||+|||++  ||++|+++|++||++|++||||+|+.|++.+..
T Consensus        14 s~~~~~~~~m~qVkqqlAvAnAqeLv~kisekCf~KCit~--PGssl~~~e~~Cis~CmdRyMdawniVSrty~s   86 (97)
T KOG1733|consen   14 SSKTTEGELMNQVKQQLAVANAQELVSKISEKCFDKCITK--PGSSLDSSEKSCISRCMDRYMDAWNIVSRTYIS   86 (97)
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC--CCcccCcchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344444 6677777776  778999999999999999998  999999999999999999999999999887754

>KOG3479 consensus Mitochondrial import inner membrane translocase, subunit TIM9 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.84  E-value=4.1e-21  Score=119.57  Aligned_cols=64  Identities=25%  Similarity=0.591  Sum_probs=59.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCchHhHHHHHHHHHHHHHHHHHHHHHHcCCC
Q 034780           17 MAETEMEYRVELFNRLAQTCFNKCVDKRYKESELNMGENSCIDRCVSKYWQVNSMIGQLLSAGGR   81 (84)
Q Consensus        17 ~~~~q~~~~~~l~~~lt~~Cf~kCV~~~~~~~~L~~~E~~Ci~~Cv~k~~~~~~~v~~~l~~~~~   81 (84)
                      ....++++|..+||+||++||..||++ |+.++|++.|++|+.+|++||+..+++|++||++..+
T Consensus         3 ~~~k~lkDFl~~YN~ltE~CF~dCV~d-ft~r~l~~~Ee~C~~~C~~Kflk~nqRv~qrf~e~~~   66 (83)
T KOG3479|consen    3 QQIKQLKDFLTLYNKLTELCFSDCVDD-FTTRDLSGKEETCVMRCAEKFLKMNQRVSQRFQELQA   66 (83)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHhH-hhcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            345689999999999999999999996 9999999999999999999999999999999998543

>PF05811 DUF842: Eukaryotic protein of unknown function (DUF842); InterPro: IPR008560 This family consists of a number of conserved eukaryotic proteins of unknown function

Probab=94.25  E-value=1  Score=29.96  Aligned_cols=65  Identities=20%  Similarity=0.351  Sum_probs=46.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCC----CCCchHhHHHHHHHHHHHHHHHHHHHHHHc
Q 034780           13 QAFGMAETEMEYRVELFNRLAQTCFNKCVDKRYKES----ELNMGENSCIDRCVSKYWQVNSMIGQLLSA   78 (84)
Q Consensus        13 q~~~~~~~q~~~~~~l~~~lt~~Cf~kCV~~~~~~~----~L~~~E~~Ci~~Cv~k~~~~~~~v~~~l~~   78 (84)
                      +.-...+.++..|+.-+++-+..|.++=-+. ++.+    .....=+.|+..||++|+..---|.+++.+
T Consensus        61 ~aq~~vq~El~~FQ~rlqrC~~~C~dk~~d~-~~~~~~~~~~~~~~e~C~~~Cvd~hi~llP~l~~r~k~  129 (131)
T PF05811_consen   61 QAQNYVQNELEQFQNRLQRCVMHCQDKAKDK-MDPNPNESDAEKQLESCVNKCVDDHIKLLPSLTKRMKK  129 (131)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-ccCCCCchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHh
Confidence            3445566788999999888888888876654 2111    112223789999999999999988888764

The sequences carry three sets of CxxxC motifs, which might suggest a type of zinc-finger formation.

>KOG3377 consensus Uncharacterized conserved protein [Function unknown]

Probab=93.34  E-value=0.73  Score=31.56  Aligned_cols=61  Identities=15%  Similarity=0.254  Sum_probs=42.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhcCCCCC---CCCCchHhHHHHHHHHHHHHHHHHHHHHHH
Q 034780           17 MAETEMEYRVELFNRLAQTCFNKCVDKRYKE---SELNMGENSCIDRCVSKYWQVNSMIGQLLS   77 (84)
Q Consensus        17 ~~~~q~~~~~~l~~~lt~~Cf~kCV~~~~~~---~~L~~~E~~Ci~~Cv~k~~~~~~~v~~~l~   77 (84)
                      ..+.++..|++-+++-+-.|-+|=-.+.-++   .+.-...++|+.+||+.++..---+.+++-
T Consensus        73 ~~~~El~~FQ~RL~Rc~m~C~Dk~~~~~~~~~~~~~~~~~~e~Cvn~cvd~~v~liP~m~k~MK  136 (143)
T KOG3377|consen   73 YVQSELGKFQDRLNRCLMVCNDKFEASKLQGSKRLKAVQQFESCVNKCVDDHVGLIPTMVKRMK  136 (143)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhHHHHHhcccCCchHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence            3456788899888887777777653221111   234555789999999999998887777764

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	84
3dxr_B	95	Crystal Structure Of The Yeast Inter-Membrane Space		1e-12
2bsk_B	90	Crystal Structure Of The Tim9 Tim10 Hexameric Compl		4e-11

>pdb|3DXR|B Chain B, Crystal Structure Of The Yeast Inter-Membrane Space Chaperone Assembly Tim9.10 Length = 95

Iteration: 1
 Score = 67.8 bits (164), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 27/74 (36%), Positives = 46/74 (62%)
Query: 9  VDKEQAFGMAETEMEYRVELFNRLAQTCFNKCVDKRYKESELNMGENSCIDRCVSKYWQV 68
          +  +Q    AE E++   ++FN+L   C+ KC++  Y E ELN  E+SC+DRCV+KY++ 
Sbjct: 15 LSSQQKIQAAEAELDLVTDMFNKLVNNCYKKCINTSYSEGELNKNESSCLDRCVAKYFET 74
Query: 69 NSMIGQLLSAGGRP 82
          N  +G+ +   G+ 
Sbjct: 75 NVQVGENMQKMGQS 88

>pdb|2BSK|B Chain B, Crystal Structure Of The Tim9 Tim10 Hexameric Complex Length = 90

Iteration: 1
 Score = 63.2 bits (152), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 27/60 (45%), Positives = 38/60 (63%)
Query: 18 AETEMEYRVELFNRLAQTCFNKCVDKRYKESELNMGENSCIDRCVSKYWQVNSMIGQLLS 77
          AE E+E   + +NR    C  KCV   YKE+EL+ GE+ C+DRCVSKY  ++   G+ L+
Sbjct: 11 AELEVEXXADXYNRXTSACHRKCVPPHYKEAELSKGESVCLDRCVSKYLDIHERXGKKLT 70

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	84
3dxr_B	95	Mitochondrial import inner membrane translocase su	2e-25
2bsk_B	90	Mitochondrial import inner membrane translocase su	2e-24
3dxr_A	89	Mitochondrial import inner membrane translocase su	3e-12
2bsk_A	89	Mitochondrial import inner membrane translocase su	3e-10
3cjh_B	64	Mitochondrial import inner membrane translocase S	2e-06
3cjh_A	64	Mitochondrial import inner membrane translocase S	4e-05

>3dxr_B Mitochondrial import inner membrane translocase subunit TIM10; alpha-propeller, helix-turn-helix, intramolecular disulfides., chaperone; 2.50A {Saccharomyces cerevisiae} Length = 95

 Score = 89.3 bits (221), Expect = 2e-25
 Identities = 26/74 (35%), Positives = 44/74 (59%)

Query: 5  NPMGVDKEQAFGMAETEMEYRVELFNRLAQTCFNKCVDKRYKESELNMGENSCIDRCVSK 64
              +  +Q    AE E++   ++FN+L   C+ KC++  Y E ELN  E+SC+DRCV+K
Sbjct: 11 GQPQLSSQQKIQAAEAELDLVTDMFNKLVNNCYKKCINTSYSEGELNKNESSCLDRCVAK 70

Query: 65 YWQVNSMIGQLLSA 78
          Y++ N  +G+ +  
Sbjct: 71 YFETNVQVGENMQK 84

>2bsk_B Mitochondrial import inner membrane translocase subunit TIM10; protein transport, mitochondrial protein import, TIM complex; 3.3A {Homo sapiens} SCOP: g.83.1.1 Length = 90

 Score = 86.6 bits (214), Expect = 2e-24
 Identities = 29/76 (38%), Positives = 45/76 (59%), Gaps = 1/76 (1%)

Query: 9  VDKEQA-FGMAETEMEYRVELFNRLAQTCFNKCVDKRYKESELNMGENSCIDRCVSKYWQ 67
          +D  +A    AE E+E   +++NR+   C  KCV   YKE+EL+ GE+ C+DRCVSKY  
Sbjct: 1  MDPLRAQQLAAELEVEMMADMYNRMTSACHRKCVPPHYKEAELSKGESVCLDRCVSKYLD 60

Query: 68 VNSMIGQLLSAGGRPP 83
          ++  +G+ L+      
Sbjct: 61 IHERMGKKLTELSMQD 76

>3dxr_A Mitochondrial import inner membrane translocase subunit TIM9; alpha-propeller, helix-turn-helix, intramolecular disulfides., chaperone; 2.50A {Saccharomyces cerevisiae} Length = 89

 Score = 55.7 bits (134), Expect = 3e-12
 Identities = 17/64 (26%), Positives = 35/64 (54%), Gaps = 1/64 (1%)

Query: 11 KEQAFGMAETEMEYRVELFNRLAQTCFNKCVDKRYKESELNMGENSCIDRCVSKYWQVNS 70
          +E    + + +M+  + L++ L + CF  CV+  +  S+L   E +CI +C  K+ + + 
Sbjct: 12 QEFQKVVEQKQMKDFMRLYSNLVERCFTDCVND-FTTSKLTNKEQTCIMKCSEKFLKHSE 70

Query: 71 MIGQ 74
           +GQ
Sbjct: 71 RVGQ 74

>2bsk_A Mitochondrial import inner membrane translocase subunit TIM9 A; protein transport, mitochondrial protein import, TIM complex; 3.3A {Homo sapiens} SCOP: g.83.1.1 Length = 89

 Score = 50.8 bits (121), Expect = 3e-10
 Identities = 14/54 (25%), Positives = 27/54 (50%), Gaps = 1/54 (1%)

Query: 21 EMEYRVELFNRLAQTCFNKCVDKRYKESELNMGENSCIDRCVSKYWQVNSMIGQ 74
          + +  +  +N+L +TCF  CV   +   E+   E +C + C+ KY ++   I  
Sbjct: 13 QFKEFLGTYNKLTETCFLDCVKD-FTTREVKPEETTCSEHCLQKYLKMTQRISM 65

>3cjh_B Mitochondrial import inner membrane translocase S TIM8; cyclic heterohexamer, chaperone, M binding, mitochondrion, protein transport; 2.60A {Saccharomyces cerevisiae} Length = 64

 Score = 40.2 bits (94), Expect = 2e-06
 Identities = 14/58 (24%), Positives = 24/58 (41%), Gaps = 1/58 (1%)

Query: 17 MAETEMEYRVELFNRLAQTCFNKCVDKRYKESELNMGENSCIDRCVSKYWQVNSMIGQ 74
            E   +      ++    CF KCV+    +S L+  E  C+  CV+++   N  I  
Sbjct: 2  EGENSKQKVQMSIHQFTNICFKKCVES-VNDSNLSSQEEQCLSNCVNRFLDTNIRIVN 58

>3cjh_A Mitochondrial import inner membrane translocase S TIM13; cyclic heterohexamer, chaperone, M binding, mitochondrion, protein transport; 2.60A {Saccharomyces cerevisiae} Length = 64

 Score = 36.7 bits (85), Expect = 4e-05
 Identities = 14/39 (35%), Positives = 24/39 (61%), Gaps = 5/39 (12%)

Query: 27 ELFNRLAQTCFNKCVDKRYKESELNMGENSCIDRCVSKY 65
          EL N++++ CF KC+   Y         ++CID+C++KY
Sbjct: 7  ELVNKISENCFEKCLTSPYATR-----NDACIDQCLAKY 40

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	84
3dxr_B	95	Mitochondrial import inner membrane translocase su	99.95
2bsk_B	90	Mitochondrial import inner membrane translocase su	99.94
3cjh_B	64	Mitochondrial import inner membrane translocase S	99.94
3dxr_A	89	Mitochondrial import inner membrane translocase su	99.94
2bsk_A	89	Mitochondrial import inner membrane translocase su	99.92
3cjh_A	64	Mitochondrial import inner membrane translocase S	99.88

>3dxr_B Mitochondrial import inner membrane translocase subunit TIM10; alpha-propeller, helix-turn-helix, intramolecular disulfides., chaperone; 2.50A {Saccharomyces cerevisiae}

Probab=99.95  E-value=6e-28  Score=153.46  Aligned_cols=72  Identities=38%  Similarity=0.840  Sum_probs=65.4

Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCchHhHHHHHHHHHHHHHHHHHHHHHHcCCC
Q 034780           10 DKEQAFGMAETEMEYRVELFNRLAQTCFNKCVDKRYKESELNMGENSCIDRCVSKYWQVNSMIGQLLSAGGR   81 (84)
Q Consensus        10 ~~~q~~~~~~~q~~~~~~l~~~lt~~Cf~kCV~~~~~~~~L~~~E~~Ci~~Cv~k~~~~~~~v~~~l~~~~~   81 (84)
                      ..++.+.++|+|+++|+++||+||++||+|||+++|++++|+++|++||+|||+||||+|++|++||++.++
T Consensus        16 ~~~qk~~~aE~q~~~~~~l~nklte~Cf~KCV~~~~~~~~L~~~E~~Ci~~Cv~Ky~d~~~~V~~~~q~~~q   87 (95)
T 3dxr_B           16 SSQQKIQAAEAELDLVTDMFNKLVNNCYKKCINTSYSEGELNKNESSCLDRCVAKYFETNVQVGENMQKMGQ   87 (95)
T ss_dssp             -CTTTTHHHHHHHHHHHHHHHHHHHHHHHHHCCCTTCCSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            335777899999999999999999999999999668999999999999999999999999999999998664

>2bsk_B Mitochondrial import inner membrane translocase subunit TIM10; protein transport, mitochondrial protein import, TIM complex; 3.3A {Homo sapiens} SCOP: g.83.1.1

Probab=99.94  E-value=2.9e-28  Score=153.18  Aligned_cols=71  Identities=39%  Similarity=0.728  Sum_probs=58.2

Q ss_pred             CHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCchHhHHHHHHHHHHHHHHHHHHHHHHcCC
Q 034780           10 DKE-QAFGMAETEMEYRVELFNRLAQTCFNKCVDKRYKESELNMGENSCIDRCVSKYWQVNSMIGQLLSAGG   80 (84)
Q Consensus        10 ~~~-q~~~~~~~q~~~~~~l~~~lt~~Cf~kCV~~~~~~~~L~~~E~~Ci~~Cv~k~~~~~~~v~~~l~~~~   80 (84)
                      |++ +.++++++|+++|+.+||+|++.||+|||+++|++++|+++|++||+|||+||++++++|+++|++.+
T Consensus         2 ~~e~~~~~~~e~q~~~~~~l~n~lte~Cf~KCv~~~~~~~~L~~~E~~Ci~~Cv~Ky~d~~~~V~~~~~~~~   73 (90)
T 2bsk_B            2 DPLRAQQLAAELEVEMMADMYNRMTSACHRKCVPPHYKEAELSKGESVCLDRCVSKYLDIHERMGKKLTELS   73 (90)
T ss_dssp             -----------CTTTTTHHHHHHHHHHHHHHHCCTTCCSSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCcCcCChhHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            566 88999999999999999999999999999755899999999999999999999999999999998754

>3cjh_B Mitochondrial import inner membrane translocase S TIM8; cyclic heterohexamer, chaperone, M binding, mitochondrion, protein transport; 2.60A {Saccharomyces cerevisiae}

Probab=99.94  E-value=4.4e-27  Score=139.59  Aligned_cols=63  Identities=24%  Similarity=0.463  Sum_probs=57.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCchHhHHHHHHHHHHHHHHHHHHHHHHcC
Q 034780           16 GMAETEMEYRVELFNRLAQTCFNKCVDKRYKESELNMGENSCIDRCVSKYWQVNSMIGQLLSAG   79 (84)
Q Consensus        16 ~~~~~q~~~~~~l~~~lt~~Cf~kCV~~~~~~~~L~~~E~~Ci~~Cv~k~~~~~~~v~~~l~~~   79 (84)
                      +++|+|++.++++||+|++.||+|||++ ||+++|+++|++||+|||+||++++++|+++|++.
T Consensus         1 i~~E~~~~~~~~~~~~lt~~Cf~kCv~~-~~~~~L~~~E~~Ci~~Cv~ky~~~~~~v~~~~~~~   63 (64)
T 3cjh_B            1 LEGENSKQKVQMSIHQFTNICFKKCVES-VNDSNLSSQEEQCLSNCVNRFLDTNIRIVNGLQNT   63 (64)
T ss_dssp             ----CCHHHHHHHHHHHHHHHHHHHCCC-CSSSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHccc-CCCCcCChhHhHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            3578899999999999999999999985 99999999999999999999999999999999875

>3dxr_A Mitochondrial import inner membrane translocase subunit TIM9; alpha-propeller, helix-turn-helix, intramolecular disulfides., chaperone; 2.50A {Saccharomyces cerevisiae}

Probab=99.94  E-value=1.3e-26  Score=145.45  Aligned_cols=69  Identities=25%  Similarity=0.552  Sum_probs=62.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCchHhHHHHHHHHHHHHHHHHHHHHHHcCCCCC
Q 034780           13 QAFGMAETEMEYRVELFNRLAQTCFNKCVDKRYKESELNMGENSCIDRCVSKYWQVNSMIGQLLSAGGRPP   83 (84)
Q Consensus        13 q~~~~~~~q~~~~~~l~~~lt~~Cf~kCV~~~~~~~~L~~~E~~Ci~~Cv~k~~~~~~~v~~~l~~~~~~~   83 (84)
                      ++++ ++.|++.|+.+||+||+.||+|||++ |++++|+++|++||+|||+|||+++++|++||++.++..
T Consensus        15 ~~~~-~e~q~k~~~~l~~~lte~Cf~kCv~~-~~~~~L~~~E~~Ci~~Cv~Ky~~~~~~v~~~~~~~~~~~   83 (89)
T 3dxr_A           15 QKVV-EQKQMKDFMRLYSNLVERCFTDCVND-FTTSKLTNKEQTCIMKCSEKFLKHSERVGQRFQEQNAAL   83 (89)
T ss_dssp             CHHH-HHHHHHHHHHHHHHHHHHHHHHHCCC-CSSSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCC-
T ss_pred             HHHH-HHHHHHHHHHHHHHHHHHHHHHHcCC-CCCCCCCchHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5555 57888999999999999999999996 899999999999999999999999999999999987654

>2bsk_A Mitochondrial import inner membrane translocase subunit TIM9 A; protein transport, mitochondrial protein import, TIM complex; 3.3A {Homo sapiens} SCOP: g.83.1.1

Probab=99.92  E-value=1.7e-25  Score=140.42  Aligned_cols=65  Identities=22%  Similarity=0.476  Sum_probs=57.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCchHhHHHHHHHHHHHHHHHHHHHHHHcCCCC
Q 034780           17 MAETEMEYRVELFNRLAQTCFNKCVDKRYKESELNMGENSCIDRCVSKYWQVNSMIGQLLSAGGRP   82 (84)
Q Consensus        17 ~~~~q~~~~~~l~~~lt~~Cf~kCV~~~~~~~~L~~~E~~Ci~~Cv~k~~~~~~~v~~~l~~~~~~   82 (84)
                      ...+++++|+.+||+|++.||+|||++ |++++|+++|++||+|||+|||+++++|+++|++.++.
T Consensus         9 ~q~~q~~~~~~l~n~lte~Cf~KCv~~-~~~~~L~~~E~~Ci~~Cv~Ky~d~~~~V~~~~~~~~~~   73 (89)
T 2bsk_A            9 DQIKQFKEFLGTYNKLTETCFLDCVKD-FTTREVKPEETTCSEHCLQKYLKMTQRISMRFQEYHIQ   73 (89)
T ss_dssp             ----CCHHHHHHHHHHHHHHHHHHCCC-CSSSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSS
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHccc-CCCCcCCchHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            445577889999999999999999985 89999999999999999999999999999999986543

>3cjh_A Mitochondrial import inner membrane translocase S TIM13; cyclic heterohexamer, chaperone, M binding, mitochondrion, protein transport; 2.60A {Saccharomyces cerevisiae}

Probab=99.88  E-value=6.8e-23  Score=121.75  Aligned_cols=56  Identities=25%  Similarity=0.614  Sum_probs=48.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCchHhHHHHHHHHHHHHHHHHHHHHHHcCCC
Q 034780           21 EMEYRVELFNRLAQTCFNKCVDKRYKESELNMGENSCIDRCVSKYWQVNSMIGQLLSAGGR   81 (84)
Q Consensus        21 q~~~~~~l~~~lt~~Cf~kCV~~~~~~~~L~~~E~~Ci~~Cv~k~~~~~~~v~~~l~~~~~   81 (84)
                      +++.++++|++|++.||+|||++  +   |+++|++||+|||+|||+++++|+++|.+..+
T Consensus         1 ~~a~~~~l~~~lt~~Cf~kCv~~--~---L~~~E~~Ci~~Cv~Ky~~~~~~v~~~~~~~~~   56 (64)
T 3cjh_A            1 AVANATELVNKISENCFEKCLTS--P---YATRNDACIDQCLAKYMRSWNVISKAYISRIQ   56 (64)
T ss_dssp             ----CHHHHHHHHHHHHHHHCCT--T---CCSCCHHHHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred             ChHHHHHHHHHHHHHHHHHHCCC--c---CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            35789999999999999999986  4   99999999999999999999999999988654

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	84
d2bskb1	65	g.83.1.1 (B:13-77) Mitochondrial import inner memb	2e-19
d2bska1	73	g.83.1.1 (A:13-85) Mitochondrial import inner memb	4e-12

>d2bskb1 g.83.1.1 (B:13-77) Mitochondrial import inner membrane translocase subunit Tim10 {Human (Homo sapiens) [TaxId: 9606]} Length = 65

class: Small proteins
fold: Tim10-like
superfamily: Tim10-like
family: Tim10/DDP
domain: Mitochondrial import inner membrane translocase subunit Tim10
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 72.1 bits (177), Expect = 2e-19
 Identities = 25/58 (43%), Positives = 39/58 (67%)

Query: 21 EMEYRVELFNRLAQTCFNKCVDKRYKESELNMGENSCIDRCVSKYWQVNSMIGQLLSA 78
          E+E   +++NR+   C  KCV   YKE+EL+ GE+ C+DRCVSKY  ++  +G+ L+ 
Sbjct: 2  EVEMMADMYNRMTSACHRKCVPPHYKEAELSKGESVCLDRCVSKYLDIHERMGKKLTE 59

>d2bska1 g.83.1.1 (A:13-85) Mitochondrial import inner membrane translocase subunit Tim9 {Human (Homo sapiens) [TaxId: 9606]} Length = 73

class: Small proteins
fold: Tim10-like
superfamily: Tim10-like
family: Tim10/DDP
domain: Mitochondrial import inner membrane translocase subunit Tim9
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.7 bits (129), Expect = 4e-12
 Identities = 14/47 (29%), Positives = 24/47 (51%), Gaps = 1/47 (2%)

Query: 28 LFNRLAQTCFNKCVDKRYKESELNMGENSCIDRCVSKYWQVNSMIGQ 74
           +N+L +TCF  CV   +   E+   E +C + C+ KY ++   I  
Sbjct: 8  TYNKLTETCFLDCVKD-FTTREVKPEETTCSEHCLQKYLKMTQRISM 53

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	84
d2bska1	73	Mitochondrial import inner membrane translocase su	99.92
d2bskb1	65	Mitochondrial import inner membrane translocase su	99.92

>d2bska1 g.83.1.1 (A:13-85) Mitochondrial import inner membrane translocase subunit Tim9 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Tim10-like
superfamily: Tim10-like
family: Tim10/DDP
domain: Mitochondrial import inner membrane translocase subunit Tim9
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=4.3e-26  Score=137.44  Aligned_cols=60  Identities=23%  Similarity=0.548  Sum_probs=56.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCchHhHHHHHHHHHHHHHHHHHHHHHHcCCC
Q 034780           21 EMEYRVELFNRLAQTCFNKCVDKRYKESELNMGENSCIDRCVSKYWQVNSMIGQLLSAGGR   81 (84)
Q Consensus        21 q~~~~~~l~~~lt~~Cf~kCV~~~~~~~~L~~~E~~Ci~~Cv~k~~~~~~~v~~~l~~~~~   81 (84)
                      |+++|+.+||+||+.||+|||++ |++++|+++|.+||+|||+||++++.+|++||++.++
T Consensus         1 Q~kdfl~~yn~lte~Cf~kCv~~-~~~~~L~~~E~~Ci~~Cv~Kf~~~~~~v~~rfqe~q~   60 (73)
T d2bska1           1 QFKEFLGTYNKLTETCFLDCVKD-FTTREVKPEETTCSEHCLQKYLKMTQRISMRFQEYHI   60 (73)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHCCC-CSSSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred             CHHHHHHHHHHHHHHHHHHHhCC-CCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            57899999999999999999996 9999999999999999999999999999999998544

>d2bskb1 g.83.1.1 (B:13-77) Mitochondrial import inner membrane translocase subunit Tim10 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Tim10-like
superfamily: Tim10-like
family: Tim10/DDP
domain: Mitochondrial import inner membrane translocase subunit Tim10
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=3e-26  Score=135.41  Aligned_cols=61  Identities=41%  Similarity=0.849  Sum_probs=56.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCchHhHHHHHHHHHHHHHHHHHHHHHHcCCC
Q 034780           21 EMEYRVELFNRLAQTCFNKCVDKRYKESELNMGENSCIDRCVSKYWQVNSMIGQLLSAGGR   81 (84)
Q Consensus        21 q~~~~~~l~~~lt~~Cf~kCV~~~~~~~~L~~~E~~Ci~~Cv~k~~~~~~~v~~~l~~~~~   81 (84)
                      |++.+++|||+||+.||+|||+++|++++|+++|.+||+||++||++++++|++||++..+
T Consensus         2 e~~~~~~m~nklt~~Cf~kCV~~~~~~~~L~~~E~~Ci~~C~~ky~d~~~~v~~r~q~~~~   62 (65)
T d2bskb1           2 EVEMMADMYNRMTSACHRKCVPPHYKEAELSKGESVCLDRCVSKYLDIHERMGKKLTELSM   62 (65)
T ss_dssp             TTTTTHHHHHHHHHHHHHHHCCTTCCSSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHCCCCCCCCcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence            4566889999999999999998768899999999999999999999999999999998653