Citrus Sinensis ID: 034787

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80---
Protein Sequence
MAQSLQRIWSHGRTVRGTVCPFSRAFSADALVEVKPGEIGMVSGIPEEHLRRRVVIYTPARTATQQGSGKLGRWKINFMSTQK
Secondary Structure (PSIPRED)
cHHHHHHHHHccccccccccHHHHHcccccEEEEEcccccccccccHHHHcccEEEEccccccccccccccccEEEEcccccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHHHHHHHcccccccHHHcHccEEEEccccEEEEccccHHHHccEEEEEccccHccccccccccEEEEEcccccc
Coil and Loop (DISEMBL)
MAQSLQRIWshgrtvrgtvcpfsrafsadalvevkpgeigmvsgipeehlRRRVViytpartatqqgsgklgrwKINFMSTQK
Flexible Loop (DISEMBL)
MAQSLQriwshgrtvrgtvcpFSRAFSADAlvevkpgeigmvsgipeehlRRRVVIytpartatqqgsgklgrwkinfmstqk
Low Complexity Region (SEG)
MAQSLQRIWSHGRTVRGTVCPFSRAFSADALVEVKPGEIGMVSGIPEEHLRRRVVIYTPARTATQQGSGKLGRWKINFMSTQK
Disordered region (IsUnstruct)
******RIWSHGRTVRGTVCPFSRAFSADALVEVKPGEIGMVSGIPEEHLRRRVVIYTPARTA*******LGRWKIN******
Disordered Region (DISOPRED)
************************************GEIGMVSGIPEEHLRRRVVIYTPART*******KL*RWKINFM****
Disordered Region (DISEMBL)
MAQSLQRIWSHGRTVRGTVCPFSRAFSADALVEVKPGEIGMVSGIPEEHLRRRVVIYTPARTATQQGSGKLGRWKINFMSTQK
Disordered Region (DISPRO)
*****QR*WSHGRTVRGTVCPFSRAFSADALVEVKPGEIGMVSGIPEEHLRRRVVIYTPARTATQQGSGKLGRWKINFM****
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MAQSLQRIWSHGRTVRGTVCPFSRAFSADALVEVKPGEIGMVSGIPEEHLRRRVVIYTPARTATQQGSGKLGRWKINFMSTQK
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	83	2.2.26 [Sep-21-2011]
Q9FJW4	154	NADH dehydrogenase [ubiqu	yes	no	0.855	0.461	0.653	2e-19
P80268	30	NADH-ubiquinone oxidoredu	N/A	no	0.361	1.0	0.8	5e-07
Q9CXZ1	175	NADH dehydrogenase [ubiqu	yes	no	0.493	0.234	0.404	0.0007
P0CB96	175	NADH dehydrogenase [ubiqu	N/A	no	0.493	0.234	0.404	0.0007
P0CB95	175	NADH dehydrogenase [ubiqu	yes	no	0.493	0.234	0.404	0.0007
O43181	175	NADH dehydrogenase [ubiqu	yes	no	0.493	0.234	0.404	0.0007
Q0MQH0	175	NADH dehydrogenase [ubiqu	N/A	no	0.493	0.234	0.404	0.0007
Q0MQH1	175	NADH dehydrogenase [ubiqu	yes	no	0.493	0.234	0.404	0.0007
Q66XS7	175	NADH dehydrogenase [ubiqu	N/A	no	0.493	0.234	0.404	0.0007

>sp|Q9FJW4|NDUS4_ARATH NADH dehydrogenase [ubiquinone] iron-sulfur protein 4, mitochondrial OS=Arabidopsis thaliana GN=FRO1 PE=2 SV=1

 Score = 94.4 bits (233), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 49/75 (65%), Positives = 59/75 (78%), Gaps = 4/75 (5%)

Query: 13 RTVR--GTVCPFSRAFSADALVE--VKPGEIGMVSGIPEEHLRRRVVIYTPARTATQQGS 68
          RT+R   T+   +R F+ DA+VE   K GEIG VSGIPEEHL R+V+IY+PARTATQ GS
Sbjct: 9  RTIRIAATLRRVARPFATDAVVESDYKRGEIGKVSGIPEEHLSRKVIIYSPARTATQSGS 68

Query: 69 GKLGRWKINFMSTQK 83
          GKLG+WKINF+ST K
Sbjct: 69 GKLGKWKINFVSTLK 83

Accessory subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I), that is believed not to be involved in catalysis. Complex I functions in the transfer of electrons from NADH to the respiratory chain. The immediate electron acceptor for the enzyme is believed to be ubiquinone.
Arabidopsis thaliana (taxid: 3702)

>sp|P80268|NUO2_SOLTU NADH-ubiquinone oxidoreductase 18 kDa subunit (Fragment) OS=Solanum tuberosum PE=1 SV=2

 Score = 53.1 bits (126), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 24/30 (80%), Positives = 29/30 (96%)

Query: 27 SADALVEVKPGEIGMVSGIPEEHLRRRVVI 56
          +++ALVE+KPGEIGMVSGIP+EHLRR VVI
Sbjct: 1  ASEALVEIKPGEIGMVSGIPDEHLRRFVVI 30

Transfer of electrons from NADH to the respiratory chain. The immediate electron acceptor for the enzyme is believed to be ubiquinone.

Solanum tuberosum (taxid: 4113)

EC: 1

EC: .

EC: 6

EC: .

EC: 9

EC: 9

EC: .

EC: 3

>sp|Q9CXZ1|NDUS4_MOUSE NADH dehydrogenase [ubiquinone] iron-sulfur protein 4, mitochondrial OS=Mus musculus GN=Ndufs4 PE=1 SV=3

 Score = 42.7 bits (99), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 17/42 (40%), Positives = 27/42 (64%), Gaps = 1/42 (2%)

Query: 38  EIGMVSGIPEEHLR-RRVVIYTPARTATQQGSGKLGRWKINF 78
           +I  ++G+PEEH++ R+V I+ PAR   Q G     +WK+ F
Sbjct: 60  DITTLTGVPEEHIKTRKVRIFVPARNNMQSGVNNTKKWKMEF 101

Accessory subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I), that is believed not to be involved in catalysis. Complex I functions in the transfer of electrons from NADH to the respiratory chain. The immediate electron acceptor for the enzyme is believed to be ubiquinone.

Mus musculus (taxid: 10090)

>sp|P0CB96|NDUS4_PONPY NADH dehydrogenase [ubiquinone] iron-sulfur protein 4, mitochondrial OS=Pongo pygmaeus GN=NDUFS4 PE=2 SV=1

 Score = 42.7 bits (99), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 17/42 (40%), Positives = 27/42 (64%), Gaps = 1/42 (2%)

Query: 38  EIGMVSGIPEEHLR-RRVVIYTPARTATQQGSGKLGRWKINF 78
           +I  ++G+PEEH++ R+V I+ PAR   Q G     +WK+ F
Sbjct: 60  DITTLTGVPEEHIKTRKVRIFVPARNNMQSGVNNTKKWKMEF 101

Accessory subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I), that is believed not to be involved in catalysis. Complex I functions in the transfer of electrons from NADH to the respiratory chain. The immediate electron acceptor for the enzyme is believed to be ubiquinone.

Pongo pygmaeus (taxid: 9600)

>sp|P0CB95|NDUS4_PONAB NADH dehydrogenase [ubiquinone] iron-sulfur protein 4, mitochondrial OS=Pongo abelii GN=NDUFS4 PE=2 SV=1

 Score = 42.7 bits (99), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 17/42 (40%), Positives = 27/42 (64%), Gaps = 1/42 (2%)

Query: 38  EIGMVSGIPEEHLR-RRVVIYTPARTATQQGSGKLGRWKINF 78
           +I  ++G+PEEH++ R+V I+ PAR   Q G     +WK+ F
Sbjct: 60  DITTLTGVPEEHIKTRKVRIFVPARNNMQSGVNNTKKWKMEF 101

Accessory subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I), that is believed not to be involved in catalysis. Complex I functions in the transfer of electrons from NADH to the respiratory chain. The immediate electron acceptor for the enzyme is believed to be ubiquinone.

Pongo abelii (taxid: 9601)

>sp|O43181|NDUS4_HUMAN NADH dehydrogenase [ubiquinone] iron-sulfur protein 4, mitochondrial OS=Homo sapiens GN=NDUFS4 PE=1 SV=1

 Score = 42.7 bits (99), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 17/42 (40%), Positives = 27/42 (64%), Gaps = 1/42 (2%)

Query: 38  EIGMVSGIPEEHLR-RRVVIYTPARTATQQGSGKLGRWKINF 78
           +I  ++G+PEEH++ R+V I+ PAR   Q G     +WK+ F
Sbjct: 60  DITTLTGVPEEHIKTRKVRIFVPARNNMQSGVNNTKKWKMEF 101

Accessory subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I), that is believed not to be involved in catalysis. Complex I functions in the transfer of electrons from NADH to the respiratory chain. The immediate electron acceptor for the enzyme is believed to be ubiquinone.

Homo sapiens (taxid: 9606)

>sp|Q0MQH0|NDUS4_GORGO NADH dehydrogenase [ubiquinone] iron-sulfur protein 4, mitochondrial OS=Gorilla gorilla gorilla GN=NDUFS4 PE=2 SV=1

 Score = 42.7 bits (99), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 17/42 (40%), Positives = 27/42 (64%), Gaps = 1/42 (2%)

Query: 38  EIGMVSGIPEEHLR-RRVVIYTPARTATQQGSGKLGRWKINF 78
           +I  ++G+PEEH++ R+V I+ PAR   Q G     +WK+ F
Sbjct: 60  DITTLTGVPEEHIKTRKVRIFVPARNNMQSGVNNTKKWKMEF 101

Accessory subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I), that is believed not to be involved in catalysis. Complex I functions in the transfer of electrons from NADH to the respiratory chain. The immediate electron acceptor for the enzyme is believed to be ubiquinone.

Gorilla gorilla gorilla (taxid: 9595)

>sp|Q0MQH1|NDUS4_PANTR NADH dehydrogenase [ubiquinone] iron-sulfur protein 4, mitochondrial OS=Pan troglodytes GN=NDUFS4 PE=2 SV=1

 Score = 42.7 bits (99), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 17/42 (40%), Positives = 27/42 (64%), Gaps = 1/42 (2%)

Query: 38  EIGMVSGIPEEHLR-RRVVIYTPARTATQQGSGKLGRWKINF 78
           +I  ++G+PEEH++ R+V I+ PAR   Q G     +WK+ F
Sbjct: 60  DITTLTGVPEEHIKTRKVRIFVPARNNMQSGVNNTKKWKMEF 101

Accessory subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I), that is believed not to be involved in catalysis. Complex I functions in the transfer of electrons from NADH to the respiratory chain. The immediate electron acceptor for the enzyme is believed to be ubiquinone.

Pan troglodytes (taxid: 9598)

>sp|Q66XS7|NDUS4_GECJA NADH dehydrogenase [ubiquinone] iron-sulfur protein 4, mitochondrial OS=Gecko japonicus GN=NDUFS4 PE=2 SV=1

 Score = 42.7 bits (99), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 17/42 (40%), Positives = 27/42 (64%), Gaps = 1/42 (2%)

Query: 38  EIGMVSGIPEEHLR-RRVVIYTPARTATQQGSGKLGRWKINF 78
           +I  ++G+PEEH++ R+V I+ PAR   Q G     +WK+ F
Sbjct: 60  DITTLTGVPEEHIKTRKVRIFVPARNNMQSGVNNTKKWKMEF 101

Accessory subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I), that is believed not to be involved in catalysis. Complex I functions in the transfer of electrons from NADH to the respiratory chain. The immediate electron acceptor for the enzyme is believed to be ubiquinone.

Gecko japonicus (taxid: 146911)

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	83
TAIR|locus:2158621	154	FRO1 "FROSTBITE1" [Arabidopsis	0.855	0.461	0.653	9.2e-20
ZFIN|ZDB-GENE-050522-421	168	ndufs4 "NADH dehydrogenase (ub	0.855	0.422	0.305	3.4e-06
UNIPROTKB|F1NJR0	163	NDUFS4 "Uncharacterized protei	0.554	0.282	0.382	1.5e-05
UNIPROTKB|Q8QGH0	116	NDUFS4 "NADH dehydrogenase" [G	0.554	0.396	0.382	1.5e-05
FB|FBgn0031021	183	CG12203 [Drosophila melanogast	0.506	0.229	0.418	2.6e-05
UNIPROTKB|H0Y9M8	116	NDUFS4 "NADH dehydrogenase [ub	0.554	0.396	0.361	8.1e-05
UNIPROTKB|F1SLQ3	134	F1SLQ3 "Uncharacterized protei	0.554	0.343	0.361	8.1e-05
UNIPROTKB|I3LU33	101	I3LU33 "Uncharacterized protei	0.554	0.455	0.361	8.1e-05
UNIPROTKB|O43181	175	NDUFS4 "NADH dehydrogenase [ub	0.554	0.262	0.361	0.00011
UNIPROTKB|P0CB95	175	NDUFS4 "NADH dehydrogenase [ub	0.554	0.262	0.361	0.00011

TAIR|locus:2158621 FRO1 "FROSTBITE1" [Arabidopsis thaliana (taxid:3702)]

 Score = 235 (87.8 bits), Expect = 9.2e-20, P = 9.2e-20
 Identities = 49/75 (65%), Positives = 59/75 (78%)

Query:    13 RTVR--GTVCPFSRAFSADALVE--VKPGEIGMVSGIPEEHLRRRVVIYTPARTATQQGS 68
             RT+R   T+   +R F+ DA+VE   K GEIG VSGIPEEHL R+V+IY+PARTATQ GS
Sbjct:     9 RTIRIAATLRRVARPFATDAVVESDYKRGEIGKVSGIPEEHLSRKVIIYSPARTATQSGS 68

Query:    69 GKLGRWKINFMSTQK 83
             GKLG+WKINF+ST K
Sbjct:    69 GKLGKWKINFVSTLK 83

GO:0005739 "mitochondrion" evidence=ISM;IDA

GO:0005743 "mitochondrial inner membrane" evidence=IEA

GO:0016651 "oxidoreductase activity, acting on NAD(P)H" evidence=IEA

GO:0022900 "electron transport chain" evidence=IEA

GO:0006970 "response to osmotic stress" evidence=IMP

GO:0008137 "NADH dehydrogenase (ubiquinone) activity" evidence=ISS

GO:0009631 "cold acclimation" evidence=IMP

GO:0005747 "mitochondrial respiratory chain complex I" evidence=IDA

GO:0050897 "cobalt ion binding" evidence=IDA

GO:0006096 "glycolysis" evidence=RCA

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=RCA

GO:0006833 "water transport" evidence=RCA

GO:0006972 "hyperosmotic response" evidence=RCA

GO:0007030 "Golgi organization" evidence=RCA

GO:0009266 "response to temperature stimulus" evidence=RCA

GO:0009651 "response to salt stress" evidence=RCA

GO:0009853 "photorespiration" evidence=RCA

GO:0046686 "response to cadmium ion" evidence=RCA

GO:0051788 "response to misfolded protein" evidence=RCA

GO:0080129 "proteasome core complex assembly" evidence=RCA

ZFIN|ZDB-GENE-050522-421 ndufs4 "NADH dehydrogenase (ubiquinone) Fe-S protein 4, (NADH-coenzyme Q reductase)" [Danio rerio (taxid:7955)]

 Score = 107 (42.7 bits), Expect = 3.4e-06, P = 3.4e-06
 Identities = 22/72 (30%), Positives = 41/72 (56%)

Query:    13 RTVRGTVCPFSRAFSADALVEVKPGEIGMVSGIPEEHLR-RRVVIYTPARTATQQGSGKL 71
             R+V  + C  +    +  +   +  +I  ++G+PEEH++ R+V I+ PAR A Q G    
Sbjct:    28 RSVSTSGCRLAEGQGSQLITVDEKLDISTLTGVPEEHIKTRKVRIFVPARNAMQSGVKNT 87

Query:    72 GRWKINFMSTQK 83
              +WKI+F + ++
Sbjct:    88 HKWKIDFDTRER 99

GO:0022900 "electron transport chain" evidence=IEA

GO:0005743 "mitochondrial inner membrane" evidence=IEA

GO:0016651 "oxidoreductase activity, acting on NAD(P)H" evidence=IEA

UNIPROTKB|F1NJR0 NDUFS4 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 101 (40.6 bits), Expect = 1.5e-05, P = 1.5e-05
 Identities = 18/47 (38%), Positives = 31/47 (65%)

Query:    38 EIGMVSGIPEEHLR-RRVVIYTPARTATQQGSGKLGRWKINFMSTQK 83
             +I  ++G+P+EH++ RRV I+ PAR A Q G     +WK+ F + ++
Sbjct:    28 DISTLTGVPDEHIKTRRVHIFVPARNAMQAGVNNTKKWKMEFDNRER 74

GO:0022900 "electron transport chain" evidence=IEA

GO:0001932 "regulation of protein phosphorylation" evidence=IEA

GO:0005747 "mitochondrial respiratory chain complex I" evidence=IEA

GO:0007420 "brain development" evidence=IEA

GO:0008137 "NADH dehydrogenase (ubiquinone) activity" evidence=IEA

GO:0019933 "cAMP-mediated signaling" evidence=IEA

GO:0032981 "mitochondrial respiratory chain complex I assembly" evidence=IEA

GO:0045333 "cellular respiration" evidence=IEA

GO:0048146 "positive regulation of fibroblast proliferation" evidence=IEA

GO:0051591 "response to cAMP" evidence=IEA

GO:0072593 "reactive oxygen species metabolic process" evidence=IEA

UNIPROTKB|Q8QGH0 NDUFS4 "NADH dehydrogenase" [Gallus gallus (taxid:9031)]

 Score = 101 (40.6 bits), Expect = 1.5e-05, P = 1.5e-05
 Identities = 18/47 (38%), Positives = 31/47 (65%)

Query:    38 EIGMVSGIPEEHLR-RRVVIYTPARTATQQGSGKLGRWKINFMSTQK 83
             +I  ++G+P+EH++ RRV I+ PAR A Q G     +WK+ F + ++
Sbjct:     1 DISTLTGVPDEHIKTRRVHIFVPARNAMQAGVNNTKKWKMEFDNRER 47

GO:0005743 "mitochondrial inner membrane" evidence=IEA

GO:0016651 "oxidoreductase activity, acting on NAD(P)H" evidence=IEA

GO:0022900 "electron transport chain" evidence=IEA

FB|FBgn0031021 CG12203 [Drosophila melanogaster (taxid:7227)]

 Score = 100 (40.3 bits), Expect = 2.6e-05, P = 2.6e-05
 Identities = 18/43 (41%), Positives = 29/43 (67%)

Query:    42 VSGIPEEHLR-RRVVIYTPARTATQQGSGKLGRWKINFMSTQK 83
             +SG+PEEH+R RRV I+ P + A Q G+  +  W+I F + ++
Sbjct:    71 ISGVPEEHIRERRVRIHIPPKNAMQSGTDNVNTWQIEFDNRER 113

GO:0005747 "mitochondrial respiratory chain complex I" evidence=ISS

GO:0008137 "NADH dehydrogenase (ubiquinone) activity" evidence=ISS

GO:0022900 "electron transport chain" evidence=IEA

UNIPROTKB|H0Y9M8 NDUFS4 "NADH dehydrogenase [ubiquinone] iron-sulfur protein 4, mitochondrial" [Homo sapiens (taxid:9606)]

 Score = 94 (38.1 bits), Expect = 8.1e-05, P = 8.1e-05
 Identities = 17/47 (36%), Positives = 30/47 (63%)

Query:    38 EIGMVSGIPEEHLR-RRVVIYTPARTATQQGSGKLGRWKINFMSTQK 83
             +I  ++G+PEEH++ R+V I+ PAR   Q G     +WK+ F + ++
Sbjct:    56 DITTLTGVPEEHIKTRKVRIFVPARNNMQSGVNNTKKWKMEFDTRER 102

GO:0005743 "mitochondrial inner membrane" evidence=IEA

GO:0016651 "oxidoreductase activity, acting on NAD(P)H" evidence=IEA

GO:0022900 "electron transport chain" evidence=IEA

UNIPROTKB|F1SLQ3 F1SLQ3 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 94 (38.1 bits), Expect = 8.1e-05, P = 8.1e-05
 Identities = 17/47 (36%), Positives = 30/47 (63%)

Query:    38 EIGMVSGIPEEHLR-RRVVIYTPARTATQQGSGKLGRWKINFMSTQK 83
             +I  ++G+PEEH++ R+V I+ PAR   Q G     +WK+ F + ++
Sbjct:    19 DITTLTGVPEEHIKTRKVRIFVPARNNMQSGVNNTKKWKMEFDTRER 65

GO:0072593 "reactive oxygen species metabolic process" evidence=IEA

GO:0051591 "response to cAMP" evidence=IEA

GO:0048146 "positive regulation of fibroblast proliferation" evidence=IEA

GO:0045333 "cellular respiration" evidence=IEA

GO:0032981 "mitochondrial respiratory chain complex I assembly" evidence=IEA

GO:0019933 "cAMP-mediated signaling" evidence=IEA

GO:0008137 "NADH dehydrogenase (ubiquinone) activity" evidence=IEA

GO:0007420 "brain development" evidence=IEA

GO:0005747 "mitochondrial respiratory chain complex I" evidence=IEA

GO:0001932 "regulation of protein phosphorylation" evidence=IEA

GO:0022900 "electron transport chain" evidence=IEA

UNIPROTKB|I3LU33 I3LU33 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 94 (38.1 bits), Expect = 8.1e-05, P = 8.1e-05
 Identities = 17/47 (36%), Positives = 30/47 (63%)

Query:    38 EIGMVSGIPEEHLR-RRVVIYTPARTATQQGSGKLGRWKINFMSTQK 83
             +I  ++G+PEEH++ R+V I+ PAR   Q G     +WK+ F + ++
Sbjct:     1 DITTLTGVPEEHIKTRKVRIFVPARNNMQSGVNNTKKWKMEFDTRER 47

GO:0022900 "electron transport chain" evidence=IEA

GO:0016651 "oxidoreductase activity, acting on NAD(P)H" evidence=IEA

GO:0005743 "mitochondrial inner membrane" evidence=IEA

UNIPROTKB|O43181 NDUFS4 "NADH dehydrogenase [ubiquinone] iron-sulfur protein 4, mitochondrial" [Homo sapiens (taxid:9606)]

 Score = 94 (38.1 bits), Expect = 0.00011, P = 0.00011
 Identities = 17/47 (36%), Positives = 30/47 (63%)

Query:    38 EIGMVSGIPEEHLR-RRVVIYTPARTATQQGSGKLGRWKINFMSTQK 83
             +I  ++G+PEEH++ R+V I+ PAR   Q G     +WK+ F + ++
Sbjct:    60 DITTLTGVPEEHIKTRKVRIFVPARNNMQSGVNNTKKWKMEFDTRER 106

GO:0006120 "mitochondrial electron transport, NADH to ubiquinone" evidence=NAS

GO:0008137 "NADH dehydrogenase (ubiquinone) activity" evidence=IMP

GO:0072593 "reactive oxygen species metabolic process" evidence=IMP

GO:0019933 "cAMP-mediated signaling" evidence=IMP

GO:0051591 "response to cAMP" evidence=IMP

GO:0032981 "mitochondrial respiratory chain complex I assembly" evidence=IMP

GO:0007420 "brain development" evidence=IMP

GO:0005747 "mitochondrial respiratory chain complex I" evidence=IDA;IMP

GO:0045333 "cellular respiration" evidence=IMP

GO:0048146 "positive regulation of fibroblast proliferation" evidence=IMP

GO:0001932 "regulation of protein phosphorylation" evidence=IMP

GO:0005743 "mitochondrial inner membrane" evidence=TAS

GO:0022904 "respiratory electron transport chain" evidence=TAS

GO:0044281 "small molecule metabolic process" evidence=TAS

GO:0005739 "mitochondrion" evidence=IDA

UNIPROTKB|P0CB95 NDUFS4 "NADH dehydrogenase [ubiquinone] iron-sulfur protein 4, mitochondrial" [Pongo abelii (taxid:9601)]

 Score = 94 (38.1 bits), Expect = 0.00011, P = 0.00011
 Identities = 17/47 (36%), Positives = 30/47 (63%)

Query:    38 EIGMVSGIPEEHLR-RRVVIYTPARTATQQGSGKLGRWKINFMSTQK 83
             +I  ++G+PEEH++ R+V I+ PAR   Q G     +WK+ F + ++
Sbjct:    60 DITTLTGVPEEHIKTRKVRIFVPARNNMQSGVNNTKKWKMEFDTRER 106

GO:0005747 "mitochondrial respiratory chain complex I" evidence=ISS

GO:0007420 "brain development" evidence=ISS

GO:0019933 "cAMP-mediated signaling" evidence=ISS

GO:0032981 "mitochondrial respiratory chain complex I assembly" evidence=ISS

GO:0045333 "cellular respiration" evidence=ISS

GO:0048146 "positive regulation of fibroblast proliferation" evidence=ISS

GO:0051591 "response to cAMP" evidence=ISS

GO:0072593 "reactive oxygen species metabolic process" evidence=ISS

GO:0008137 "NADH dehydrogenase (ubiquinone) activity" evidence=ISS

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Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	83
pfam04800	101	pfam04800, ETC_C1_NDUFA4, ETC complex I subunit co	8e-08

>gnl|CDD|218273 pfam04800, ETC_C1_NDUFA4, ETC complex I subunit conserved region

 Score = 45.2 bits (107), Expect = 8e-08
 Identities = 11/32 (34%), Positives = 16/32 (50%)

Query: 52 RRVVIYTPARTATQQGSGKLGRWKINFMSTQK 83
          R   IY PAR A Q G  +  +W + F  + +
Sbjct: 1  RTARIYRPARNAMQSGRARTKKWTLEFDRSAR 32

Family of pankaryotic NADH-ubiquinone oxidoreductase subunits (EC:1.6.5.3) (EC:1.6.99.3) from complex I of the electron transport chain initially identified in Neurospora crassa as a 21 kDa protein. Length = 101

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	83
KOG3389	178	consensus NADH:ubiquinone oxidoreductase, NDUFS4/1	99.83
PF04800	101	ETC_C1_NDUFA4: ETC complex I subunit conserved reg	99.5

>KOG3389 consensus NADH:ubiquinone oxidoreductase, NDUFS4/18 kDa subunit [Energy production and conversion]

Probab=99.83  E-value=1.5e-21  Score=143.18  Aligned_cols=63  Identities=57%  Similarity=0.924  Sum_probs=56.7

Q ss_pred             cccccccccc-ceec--ccCccccccCCcHHHhh-ceeeeecCCCCcccCCCCCCCCeEEeeecCCC
Q 034787           21 PFSRAFSADA-LVEV--KPGEIGMVSGIPEEHLR-RRVVIYTPARTATQQGSGKLGRWKINFMSTQK   83 (83)
Q Consensus        21 p~~r~fs~~~-~~~~--k~~e~~~vSG~P~e~~~-R~VrIy~Pak~AmQSG~~~t~~W~lefd~~~r   83 (83)
                      .+.|.|+.|+ +|+.  |-.+++.|+|+|+||+. |+||||.|||++||||.+|+++|+||||..+|
T Consensus        41 rla~~~~~Dak~ve~d~kld~i~~v~GvPeeH~~sRkvrIf~PAR~~tQSg~gntkkWkiefd~r~r  107 (178)
T KOG3389|consen   41 RLARPFATDAKVVESDYKLDEIGKVSGVPEEHLDSRKVRIFSPARTATQSGSGNTKKWKIEFDSRLR  107 (178)
T ss_pred             cccccccccceeEeehhhhcccccccCCChHHhcceeEEEecchhhhhhcccCCccceEEEecchhh
Confidence            3478999999 6653  56789999999999996 99999999999999999999999999999875

>PF04800 ETC_C1_NDUFA4: ETC complex I subunit conserved region; InterPro: IPR006885 This entry represents prokaryotic NADH-ubiquinone oxidoreductase subunits (1

Probab=99.50  E-value=1.1e-14  Score=99.01  Aligned_cols=32  Identities=31%  Similarity=0.728  Sum_probs=21.9

Q ss_pred             ceeeeecCCCCcccCCCCCCCCeEEeeecCCC
Q 034787           52 RRVVIYTPARTATQQGSGKLGRWKINFMSTQK   83 (83)
Q Consensus        52 R~VrIy~Pak~AmQSG~~~t~~W~lefd~~~r   83 (83)
                      |+||||+|+|+|||||.+++++|+||||..+|
T Consensus         1 r~arIy~pak~amQSG~~~t~~W~lefe~~~~   32 (101)
T PF04800_consen    1 RKARIYQPAKNAMQSGTANTKKWVLEFETRAR   32 (101)
T ss_dssp             -EEEEE--SS--STTTT-SS--EEEEEEESSS
T ss_pred             CeEEEeCCCCCCCCCCCCCCCCEEEeecCcCC
Confidence            78999999999999999999999999996543

6.5.3 from EC, 1.6.99.3 from EC) from complex I of the electron transport chain initially identified in Neurospora crassa as a 21 kDa protein [].; GO: 0016651 oxidoreductase activity, acting on NADH or NADPH, 0022900 electron transport chain, 0005743 mitochondrial inner membrane; PDB: 2JYA_A 2LJU_A.

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	83
2lju_A	108	Putative oxidoreductase; structural genomics, seat	8e-10
2jya_A	106	AGR_C_3324P, uncharacterized protein ATU1810; prot	7e-08

>2lju_A Putative oxidoreductase; structural genomics, seattle structural GENO center for infectious disease, ssgcid; NMR {Ehrlichia chaffeensis} Length = 108

 Score = 50.1 bits (120), Expect = 8e-10
 Identities = 14/37 (37%), Positives = 19/37 (51%), Gaps = 1/37 (2%)

Query: 43 SGIPEEHLR-RRVVIYTPARTATQQGSGKLGRWKINF 78
           G  +E +   R  IY PA++  Q G  KL  WK+ F
Sbjct: 2  PGSMQEQVSNVRARIYKPAKSTMQSGHSKLKAWKLEF 38

>2jya_A AGR_C_3324P, uncharacterized protein ATU1810; protein with unknown function ATU1810, ontario centre for ST proteomics, OCSP; NMR {Agrobacterium tumefaciens str} Length = 106

 Score = 44.7 bits (106), Expect = 7e-08
 Identities = 11/29 (37%), Positives = 15/29 (51%)

Query: 52 RRVVIYTPARTATQQGSGKLGRWKINFMS 80
              IY PA+TA Q G+ K   W + F +
Sbjct: 4  MSAKIYRPAKTAMQSGTAKTNVWVLEFDA 32

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	83
2lju_A	108	Putative oxidoreductase; structural genomics, seat	99.59
2jya_A	106	AGR_C_3324P, uncharacterized protein ATU1810; prot	99.52

>2lju_A Putative oxidoreductase; structural genomics, seattle structural GENO center for infectious disease, ssgcid; NMR {Ehrlichia chaffeensis}

Probab=99.59  E-value=5.7e-16  Score=105.53  Aligned_cols=39  Identities=31%  Similarity=0.554  Sum_probs=33.5

Q ss_pred             cccCCcHHHhhceeeeecCCCCcccCCCCCCCCeEEeeecCC
Q 034787           41 MVSGIPEEHLRRRVVIYTPARTATQQGSGKLGRWKINFMSTQ   82 (83)
Q Consensus        41 ~vSG~P~e~~~R~VrIy~Pak~AmQSG~~~t~~W~lefd~~~   82 (83)
                      ...|.|+.   |+||||+|+|||||||++++++|+||||+.+
T Consensus         4 ~~~~~~~~---~~arIy~Pak~amQSG~~~t~~W~lefe~~~   42 (108)
T 2lju_A            4 SMQEQVSN---VRARIYKPAKSTMQSGHSKLKAWKLEFEPSC   42 (108)
T ss_dssp             -CCCCCCC---CEEEEECCCCCCSSSSCCSCCCEEEEECCCS
T ss_pred             ccCCCCCC---CEEEEeCCCCCccccCCCCCCceEEEEecCC
Confidence            44566655   8999999999999999999999999999854

>2jya_A AGR_C_3324P, uncharacterized protein ATU1810; protein with unknown function ATU1810, ontario centre for ST proteomics, OCSP; NMR {Agrobacterium tumefaciens str}

Probab=99.52  E-value=5.2e-15  Score=100.61  Aligned_cols=30  Identities=37%  Similarity=0.646  Sum_probs=28.9

Q ss_pred             ceeeeecCCCCcccCCCCCCCCeEEeeecC
Q 034787           52 RRVVIYTPARTATQQGSGKLGRWKINFMST   81 (83)
Q Consensus        52 R~VrIy~Pak~AmQSG~~~t~~W~lefd~~   81 (83)
                      ++||||+|+|||||||++++++|+||||+.
T Consensus         4 m~arIy~Pak~amQSG~~~t~~W~lefe~~   33 (106)
T 2jya_A            4 MSAKIYRPAKTAMQSGTAKTNVWVLEFDAE   33 (106)
T ss_dssp             CEEEEECCSSCCCTTTTCCSCCEEEEEEEE
T ss_pred             cEEEEeCCCCCccccCCCCCCceEEEEecC
Confidence            789999999999999999999999999984

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00