Citrus Sinensis ID: 034862

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80-
Protein Sequence
MQRDGASDVLDIHKKHHPQKINCSQACNRRCKESSRKNMCHRACRTCCKRCHCVPPGTYGNKQACPCYASLRTHGNRPKCP
Secondary Structure (PSIPRED)
cccccccccccccccccccccccHHHHHHHHHHcccccHHHHHHHHHHccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccccccccccccccccccccHHHHHccccccccHHHHHHHHHHHHccccccccccccccccccccccccccccccc
Coil and Loop (DISEMBL)
mqrdgasdvldihkkhhpqkincsqacnrrckessrknmchracrtcckrchcvppgtygnkqacpcyaslrthgnrpkcp
Flexible Loop (DISEMBL)
mqrdgasdvldihkkhhpqkincsqacnrRCKESSRKNMCHRACRTCCKRCHCVPPGTYGNKQACPCYASlrthgnrpkcp
Low Complexity Region (SEG)
MQRDGASDVLDIHKKHHPQKINCSQACNRRCKESSRKNMCHRACRTCCKRCHCVPPGTYGNKQACPCYASLRTHGNRPKCP
Disordered region (IsUnstruct)
*************************************NMCHRACRTCCKRCHCVPPGTYGNKQACPCYASL**********
Disordered Region (DISOPRED)
**********************CS*ACNRRCKESSRKNMCHRACRTCCKRCHCVPPGTYGNKQACPCYASLRTHG******
Disordered Region (DISEMBL)
MQRDGASDVLDIHKKHHPQKINCSQAC**************RACRTCCKRCHCVPPGTYGNKQACPCYASLR*********
Disordered Region (DISPRO)
******************QKINCSQACNRRCKESSRKNMCHRACRTCCKRCHCVPPGTYGNKQACPCYASLRT******C*
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MQRDGASDVLDIHKKHHPQKINCSQACNRRCKESSRKNMCHRACRTCCKRCHCVPPGTYGNKQACPCYASLRTHGNRPKCP
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	81	2.2.26 [Sep-21-2011]
Q8GWK5	119	Gibberellin-regulated pro	yes	no	0.814	0.554	0.651	1e-19
Q93X17	104	Snakin-2 OS=Solanum tuber	N/A	no	1.0	0.778	0.530	5e-18
P46689	98	Gibberellin-regulated pro	no	no	0.925	0.765	0.592	4e-17
F4IQJ4	94	Gibberellin-regulated pro	no	no	0.876	0.755	0.577	3e-16
P46687	99	Gibberellin-regulated pro	no	no	0.888	0.727	0.525	1e-14
Q9LFR3	275	Gibberellin-regulated pro	no	no	0.765	0.225	0.587	5e-14
P46690	106	Gibberellin-regulated pro	no	no	1.0	0.764	0.392	6e-11
P47926	96	Protein RSI-1 OS=Solanum	N/A	no	0.901	0.760	0.44	7e-11
Q6NMQ7	101	Gibberellin-regulated pro	no	no	0.728	0.584	0.508	1e-10
P27057	112	Protein GAST1 OS=Solanum	N/A	no	0.777	0.562	0.507	1e-10

>sp|Q8GWK5|GASA9_ARATH Gibberellin-regulated protein 9 OS=Arabidopsis thaliana GN=GASA9 PE=2 SV=1

 Score = 95.1 bits (235), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 43/66 (65%), Positives = 52/66 (78%)

Query: 16  HHPQKINCSQACNRRCKESSRKNMCHRACRTCCKRCHCVPPGTYGNKQACPCYASLRTHG 75
           HH  +INC  AC RRC ++SRK +CHRAC +CC +C CVPPGT GN  +CPCYAS+RTHG
Sbjct: 54  HHRPRINCGHACARRCSKTSRKKVCHRACGSCCAKCQCVPPGTSGNTASCPCYASIRTHG 113

Query: 76  NRPKCP 81
           N+ KCP
Sbjct: 114 NKLKCP 119

Gibberellin-regulated protein that may function in hormonal controlled steps of development such as seed germination, flowering and seed maturation.
Arabidopsis thaliana (taxid: 3702)

>sp|Q93X17|SNAK2_SOLTU Snakin-2 OS=Solanum tuberosum GN=SN2 PE=1 SV=1

 Score = 89.7 bits (221), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 43/81 (53%), Positives = 54/81 (66%)

Query: 1   MQRDGASDVLDIHKKHHPQKINCSQACNRRCKESSRKNMCHRACRTCCKRCHCVPPGTYG 60
           +Q D  +        +  +KI+C  AC  RC+ SSR  +C+RAC TCC RC+CVPPGT G
Sbjct: 24  IQTDQVTSNAISEAAYSYKKIDCGGACAARCRLSSRPRLCNRACGTCCARCNCVPPGTSG 83

Query: 61  NKQACPCYASLRTHGNRPKCP 81
           N + CPCYASL THGN+ KCP
Sbjct: 84  NTETCPCYASLTTHGNKRKCP 104

Has an antimicrobial activity. Causes a rapid aggregation of both Gram-positive and Gram-negative bacteria, but the antimicrobial activity is not correlated with the capacity to aggregate bacteria.

Solanum tuberosum (taxid: 4113)

>sp|P46689|GASA1_ARATH Gibberellin-regulated protein 1 OS=Arabidopsis thaliana GN=GASA1 PE=2 SV=2

 Score = 86.7 bits (213), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 45/76 (59%), Positives = 54/76 (71%), Gaps = 1/76 (1%)

Query: 7  SDVLDIHKKH-HPQKINCSQACNRRCKESSRKNMCHRACRTCCKRCHCVPPGTYGNKQAC 65
          +DV +  KK+ + +KI+C  AC  RC+ S R  +CHRAC TCC RC+CVPPGTYGN   C
Sbjct: 23 ADVENSQKKNGYAKKIDCGSACVARCRLSRRPRLCHRACGTCCYRCNCVPPGTYGNYDKC 82

Query: 66 PCYASLRTHGNRPKCP 81
           CYASL THG R KCP
Sbjct: 83 QCYASLTTHGGRRKCP 98

Gibberellin-regulated protein that may function in hormonal controlled steps of development such as seed germination, flowering and seed maturation.

Arabidopsis thaliana (taxid: 3702)

>sp|F4IQJ4|GASAB_ARATH Gibberellin-regulated protein 11 OS=Arabidopsis thaliana GN=GASA11 PE=3 SV=1

 Score = 83.6 bits (205), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 41/71 (57%), Positives = 47/71 (66%)

Query: 11 DIHKKHHPQKINCSQACNRRCKESSRKNMCHRACRTCCKRCHCVPPGTYGNKQACPCYAS 70
          D+   +   KI+C+  C  RC  SSR N+CHRAC TCC RC+CV PGT GN   CPCY S
Sbjct: 24 DMVTSNDAPKIDCNSRCQERCSLSSRPNLCHRACGTCCARCNCVAPGTSGNYDKCPCYGS 83

Query: 71 LRTHGNRPKCP 81
          L THG R KCP
Sbjct: 84 LTTHGGRRKCP 94

Gibberellin-regulated protein that may function in hormonal controlled steps of development such as seed germination, flowering and seed maturation.

Arabidopsis thaliana (taxid: 3702)

>sp|P46687|GASA3_ARATH Gibberellin-regulated protein 3 OS=Arabidopsis thaliana GN=GASA3 PE=2 SV=1

 Score = 78.6 bits (192), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 41/78 (52%), Positives = 48/78 (61%), Gaps = 6/78 (7%)

Query: 10 LDIHKKHHPQ------KINCSQACNRRCKESSRKNMCHRACRTCCKRCHCVPPGTYGNKQ 63
          L +H     Q      KI+C   C  RC +SSR N+C RAC +CC RC+CVPPGT GN  
Sbjct: 22 LHVHAAEDSQVGEGVVKIDCGGRCKGRCSKSSRPNLCLRACNSCCYRCNCVPPGTAGNHH 81

Query: 64 ACPCYASLRTHGNRPKCP 81
           CPCYAS+ T G R KCP
Sbjct: 82 LCPCYASITTRGGRLKCP 99

Gibberellin-regulated protein that may function in hormonal controlled steps of development such as seed germination, flowering and seed maturation.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LFR3|GASAE_ARATH Gibberellin-regulated protein 14 OS=Arabidopsis thaliana GN=GASA14 PE=1 SV=1

 Score = 76.3 bits (186), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 37/63 (58%), Positives = 46/63 (73%), Gaps = 1/63 (1%)

Query: 20  KINCSQACNRRCKESSRKNMCHRACRTCCKRCHCVPPGTYGNKQAC-PCYASLRTHGNRP 78
           +I+C   C  RC + SRKN+C RAC TCC RC CVPPGTYGNK+ C  CYA+++T G + 
Sbjct: 213 RIDCVPLCGTRCGQHSRKNVCMRACVTCCYRCKCVPPGTYGNKEKCGSCYANMKTRGGKS 272

Query: 79  KCP 81
           KCP
Sbjct: 273 KCP 275

Gibberellin-regulated protein that may function in hormonal controlled steps of development such as seed germination, flowering and seed maturation.

Arabidopsis thaliana (taxid: 3702)

>sp|P46690|GASA4_ARATH Gibberellin-regulated protein 4 OS=Arabidopsis thaliana GN=GASA4 PE=1 SV=2

 Score = 66.2 bits (160), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 33/84 (39%), Positives = 46/84 (54%), Gaps = 3/84 (3%)

Query: 1   MQRDGASDVLDIHKKHHP---QKINCSQACNRRCKESSRKNMCHRACRTCCKRCHCVPPG 57
           +     S+V    K++ P   ++  C   C+RRCK++     C   C  CC++C CVPPG
Sbjct: 23  VMASSGSNVKWSQKRYGPGSLKRTQCPSECDRRCKKTQYHKACITFCNKCCRKCLCVPPG 82

Query: 58  TYGNKQACPCYASLRTHGNRPKCP 81
            YGNKQ C CY + +T    PKCP
Sbjct: 83  YYGNKQVCSCYNNWKTQEGGPKCP 106

Gibberellin-regulated protein involved in the regulation of floral meristem and floral organ identity, and promotion of seed size and weight. May play a role in the promotion of gibberellin responses such as regulation of flowering under short-day conditions, seed germination and inhibition of gibberellin oxidase. Possesses redox activity in E.coli and may function in redox regulation in planta.

Arabidopsis thaliana (taxid: 3702)

>sp|P47926|RSI1_SOLLC Protein RSI-1 OS=Solanum lycopersicum GN=RSI-1 PE=2 SV=1

 Score = 65.9 bits (159), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 33/75 (44%), Positives = 44/75 (58%), Gaps = 2/75 (2%)

Query: 7  SDVLDIHKKHHPQKINCSQACNRRCKESSRKNMCHRACRTCCKRCHCVPPGTYGNKQACP 66
          S+V++ + K  P   +C   C  RC  +S K  C   C+ CC  C CVP G YGNKQ+CP
Sbjct: 24 SNVVEGYNKLRPT--DCKPRCTYRCSATSHKKPCMFFCQKCCATCLCVPKGVYGNKQSCP 81

Query: 67 CYASLRTHGNRPKCP 81
          CY + +T   +PKCP
Sbjct: 82 CYNNWKTQEGKPKCP 96

Solanum lycopersicum (taxid: 4081)

>sp|Q6NMQ7|GASA6_ARATH Gibberellin-regulated protein 6 OS=Arabidopsis thaliana GN=GASA6 PE=3 SV=1

 Score = 65.1 bits (157), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 30/59 (50%), Positives = 35/59 (59%)

Query: 23  CSQACNRRCKESSRKNMCHRACRTCCKRCHCVPPGTYGNKQACPCYASLRTHGNRPKCP 81
           C   C RRC  +     C   C+ CC +C CVPPGTYGNKQ CPCY + +T    PKCP
Sbjct: 43  CGGQCTRRCSNTKYHKPCMFFCQKCCAKCLCVPPGTYGNKQVCPCYNNWKTQQGGPKCP 101

Gibberellin-regulated protein that may function in hormonal controlled steps of development such as seed germination, flowering and seed maturation.

Arabidopsis thaliana (taxid: 3702)

>sp|P27057|GAST1_SOLLC Protein GAST1 OS=Solanum lycopersicum GN=GAST1 PE=2 SV=1

 Score = 65.1 bits (157), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 33/65 (50%), Positives = 41/65 (63%), Gaps = 2/65 (3%)

Query: 17  HPQKINCSQACNRRCKESSRKNMCHRACRTCCKRCHCVPPGTYGNKQACPCYASLRTHGN 76
           HPQ  +C   C  RC ++S K  C   C+ CC +C CVP GTYGNKQ+CPCY + +T   
Sbjct: 50  HPQ--DCQPKCTYRCSKTSYKKPCMFFCQKCCAKCLCVPAGTYGNKQSCPCYNNWKTKRG 107

Query: 77  RPKCP 81
            PKCP
Sbjct: 108 GPKCP 112

Solanum lycopersicum (taxid: 4081)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	81
225460735	112	PREDICTED: gibberellin-regulated protein	0.962	0.696	0.717	8e-27
224145186	79	predicted protein [Populus trichocarpa]	0.962	0.987	0.743	2e-26
255571758	113	Gibberellin-regulated protein 1 precurso	0.962	0.690	0.737	5e-24
449442090	106	PREDICTED: gibberellin-regulated protein	0.962	0.735	0.645	2e-21
449532789	88	PREDICTED: gibberellin-regulated protein	0.962	0.886	0.645	6e-21
374256095	117	putative gibberellin-regulated protein,	0.975	0.675	0.629	8e-20
116783348	109	unknown [Picea sitchensis]	0.839	0.623	0.661	1e-18
116781346	108	unknown [Picea sitchensis]	0.839	0.629	0.661	1e-18
116779087	109	unknown [Picea sitchensis]	0.777	0.577	0.682	2e-18
15219934	119	putative gibberellin-regulated protein [	0.814	0.554	0.651	5e-18

>gi|225460735|ref|XP_002272568.1| PREDICTED: gibberellin-regulated protein 9 [Vitis vinifera] gi|296081141|emb|CBI18167.3| unnamed protein product [Vitis vinifera]

 Score =  124 bits (311), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 56/78 (71%), Positives = 69/78 (88%)

Query: 4   DGASDVLDIHKKHHPQKINCSQACNRRCKESSRKNMCHRACRTCCKRCHCVPPGTYGNKQ 63
           D + D + +HKK HP+KINCS AC+RRC+++SRKN+C RAC+TCCKRCHCVPPGTYGNK 
Sbjct: 35  DESRDEVALHKKSHPRKINCSYACSRRCRKASRKNVCSRACKTCCKRCHCVPPGTYGNKN 94

Query: 64  ACPCYASLRTHGNRPKCP 81
            CPCYASL+THG++PKCP
Sbjct: 95  MCPCYASLKTHGHKPKCP 112

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224145186|ref|XP_002325557.1| predicted protein [Populus trichocarpa] gi|222862432|gb|EEE99938.1| predicted protein [Populus trichocarpa]

 Score =  122 bits (307), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 58/78 (74%), Positives = 66/78 (84%)

Query: 4  DGASDVLDIHKKHHPQKINCSQACNRRCKESSRKNMCHRACRTCCKRCHCVPPGTYGNKQ 63
          D  SDV+ I KKH+P++INC   C RRC+ SSRKN+CHRAC+TCC RC CVPPGTYGNK 
Sbjct: 2  DEESDVVAIDKKHYPKRINCGYLCARRCRASSRKNVCHRACKTCCNRCRCVPPGTYGNKS 61

Query: 64 ACPCYASLRTHGNRPKCP 81
          ACPCYASLRTHGN+PKCP
Sbjct: 62 ACPCYASLRTHGNKPKCP 79

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255571758|ref|XP_002526822.1| Gibberellin-regulated protein 1 precursor, putative [Ricinus communis] gi|223533826|gb|EEF35557.1| Gibberellin-regulated protein 1 precursor, putative [Ricinus communis]

 Score =  114 bits (286), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 59/80 (73%), Positives = 66/80 (82%), Gaps = 2/80 (2%)

Query: 4   DGASDV--LDIHKKHHPQKINCSQACNRRCKESSRKNMCHRACRTCCKRCHCVPPGTYGN 61
           DG SDV  +D    +H +KINC  AC+RRC+ESSRKN+CHRACRTCC RC CVPPGTYGN
Sbjct: 34  DGGSDVVAIDKKHHYHHKKINCGYACSRRCRESSRKNVCHRACRTCCLRCQCVPPGTYGN 93

Query: 62  KQACPCYASLRTHGNRPKCP 81
           K  CPCYASLRTHGN+PKCP
Sbjct: 94  KHVCPCYASLRTHGNKPKCP 113

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449442090|ref|XP_004138815.1| PREDICTED: gibberellin-regulated protein 9-like [Cucumis sativus]

 Score =  106 bits (264), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 51/79 (64%), Positives = 60/79 (75%), Gaps = 1/79 (1%)

Query: 4   DGASDVLDIHKKHHPQ-KINCSQACNRRCKESSRKNMCHRACRTCCKRCHCVPPGTYGNK 62
           D  ++ + + KK+H Q KINC   C+RRC +  RK +C RAC TCC RCHCVPPGTYGN 
Sbjct: 28  DEGTNTVALTKKYHYQPKINCKSECSRRCSKVFRKKICMRACGTCCSRCHCVPPGTYGNH 87

Query: 63  QACPCYASLRTHGNRPKCP 81
           QACPCYA LRTHGN+PKCP
Sbjct: 88  QACPCYARLRTHGNKPKCP 106

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449532789|ref|XP_004173361.1| PREDICTED: gibberellin-regulated protein 9-like, partial [Cucumis sativus]

 Score =  104 bits (260), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 51/79 (64%), Positives = 60/79 (75%), Gaps = 1/79 (1%)

Query: 4  DGASDVLDIHKKHHPQ-KINCSQACNRRCKESSRKNMCHRACRTCCKRCHCVPPGTYGNK 62
          D  ++ + + KK+H Q KINC   C+RRC +  RK +C RAC TCC RCHCVPPGTYGN 
Sbjct: 10 DEGTNTVALTKKYHYQPKINCKSECSRRCSKVFRKKICMRACGTCCSRCHCVPPGTYGNH 69

Query: 63 QACPCYASLRTHGNRPKCP 81
          QACPCYA LRTHGN+PKCP
Sbjct: 70 QACPCYARLRTHGNKPKCP 88

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|374256095|gb|AEZ00909.1| putative gibberellin-regulated protein, partial [Elaeis guineensis]

 Score =  100 bits (250), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 51/81 (62%), Positives = 60/81 (74%), Gaps = 2/81 (2%)

Query: 1   MQRDGASDVLDIHKKHHPQKINCSQACNRRCKESSRKNMCHRACRTCCKRCHCVPPGTYG 60
           +Q  G   VLD  ++    +INC  AC RRC ++SRKN+C RAC TCC RCHCVPPGT G
Sbjct: 39  IQGKGEVAVLDGIRRL--PRINCRFACARRCMKASRKNVCTRACGTCCFRCHCVPPGTSG 96

Query: 61  NKQACPCYASLRTHGNRPKCP 81
           NK +CPCYASLRTHG +PKCP
Sbjct: 97  NKNSCPCYASLRTHGYKPKCP 117

Source: Elaeis guineensis

Species: Elaeis guineensis

Genus: Elaeis

Family: Arecaceae

Order: Arecales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|116783348|gb|ABK22904.1| unknown [Picea sitchensis]

 Score = 97.1 bits (240), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 45/68 (66%), Positives = 53/68 (77%)

Query: 14  KKHHPQKINCSQACNRRCKESSRKNMCHRACRTCCKRCHCVPPGTYGNKQACPCYASLRT 73
           K+   Q I+C+ AC  RC ++SR NMC RAC TCC RC+CVPPGT GN+  CPCYASL+T
Sbjct: 42  KRRLLQTIDCNAACGERCTKASRHNMCLRACGTCCARCNCVPPGTSGNQDLCPCYASLKT 101

Query: 74  HGNRPKCP 81
           HGNRPKCP
Sbjct: 102 HGNRPKCP 109

Source: Picea sitchensis

Species: Picea sitchensis

Genus: Picea

Family: Pinaceae

Order: Coniferales

Class: Coniferopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|116781346|gb|ABK22062.1| unknown [Picea sitchensis]

 Score = 97.1 bits (240), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 45/68 (66%), Positives = 53/68 (77%)

Query: 14  KKHHPQKINCSQACNRRCKESSRKNMCHRACRTCCKRCHCVPPGTYGNKQACPCYASLRT 73
           K+   Q I+C+ AC  RC ++SR NMC RAC TCC RC+CVPPGT GN+  CPCYASL+T
Sbjct: 41  KRRLLQTIDCNAACGERCTKASRHNMCLRACGTCCARCNCVPPGTSGNQDLCPCYASLKT 100

Query: 74  HGNRPKCP 81
           HGNRPKCP
Sbjct: 101 HGNRPKCP 108

Source: Picea sitchensis

Species: Picea sitchensis

Genus: Picea

Family: Pinaceae

Order: Coniferales

Class: Coniferopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|116779087|gb|ABK21133.1| unknown [Picea sitchensis]

 Score = 96.7 bits (239), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 43/63 (68%), Positives = 52/63 (82%)

Query: 19  QKINCSQACNRRCKESSRKNMCHRACRTCCKRCHCVPPGTYGNKQACPCYASLRTHGNRP 78
           Q I+C+ AC +RCKE+SR  +C RAC TCC +C+CVPPGT GNK  CPCYASL+THGN+P
Sbjct: 47  QTIDCNAACGQRCKEASRHKVCLRACGTCCAKCNCVPPGTSGNKDVCPCYASLKTHGNKP 106

Query: 79  KCP 81
           KCP
Sbjct: 107 KCP 109

Source: Picea sitchensis

Species: Picea sitchensis

Genus: Picea

Family: Pinaceae

Order: Coniferales

Class: Coniferopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15219934|ref|NP_173683.1| putative gibberellin-regulated protein [Arabidopsis thaliana] gi|334182771|ref|NP_001185065.1| putative gibberellin-regulated protein [Arabidopsis thaliana] gi|334182773|ref|NP_001185066.1| putative gibberellin-regulated protein [Arabidopsis thaliana] gi|75150993|sp|Q8GWK5.1|GASA9_ARATH RecName: Full=Gibberellin-regulated protein 9; AltName: Full=GAST1 protein homolog 9; Flags: Precursor gi|26452585|dbj|BAC43377.1| putative gibberellin-regulated protein [Arabidopsis thaliana] gi|332192149|gb|AEE30270.1| putative gibberellin-regulated protein [Arabidopsis thaliana] gi|332192150|gb|AEE30271.1| putative gibberellin-regulated protein [Arabidopsis thaliana] gi|332192151|gb|AEE30272.1| putative gibberellin-regulated protein [Arabidopsis thaliana]

 Score = 95.1 bits (235), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 43/66 (65%), Positives = 52/66 (78%)

Query: 16  HHPQKINCSQACNRRCKESSRKNMCHRACRTCCKRCHCVPPGTYGNKQACPCYASLRTHG 75
           HH  +INC  AC RRC ++SRK +CHRAC +CC +C CVPPGT GN  +CPCYAS+RTHG
Sbjct: 54  HHRPRINCGHACARRCSKTSRKKVCHRACGSCCAKCQCVPPGTSGNTASCPCYASIRTHG 113

Query: 76  NRPKCP 81
           N+ KCP
Sbjct: 114 NKLKCP 119

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	81
TAIR|locus:2199645	119	AT1G22690 "AT1G22690" [Arabido	0.814	0.554	0.651	9.7e-25
TAIR|locus:2005634	98	GASA1 "AT1G75750" [Arabidopsis	0.925	0.765	0.592	1.3e-22
TAIR|locus:2062175	94	AT2G18420 "AT2G18420" [Arabido	0.876	0.755	0.577	3e-21
TAIR|locus:2136897	99	GASA2 "AT4G09610" [Arabidopsis	0.765	0.626	0.612	3.5e-20
TAIR|locus:2136892	99	GASA3 "AT4G09600" [Arabidopsis	0.765	0.626	0.612	9.2e-20
TAIR|locus:2147810	275	GASA14 "AT5G14920" [Arabidopsi	0.765	0.225	0.587	3.1e-19
TAIR|locus:505006327	97	GASA5 "GAST1 protein homolog 5	0.802	0.670	0.522	6.7e-17
TAIR|locus:4010713737	103	AT3G10185 [Arabidopsis thalian	0.790	0.621	0.484	6e-16
TAIR|locus:2150896	106	GASA4 "AT5G15230" [Arabidopsis	0.925	0.707	0.423	2e-15
TAIR|locus:2019195	101	GASA6 "AT1G74670" [Arabidopsis	0.728	0.584	0.508	2.6e-15

TAIR|locus:2199645 AT1G22690 "AT1G22690" [Arabidopsis thaliana (taxid:3702)]

 Score = 282 (104.3 bits), Expect = 9.7e-25, P = 9.7e-25
 Identities = 43/66 (65%), Positives = 52/66 (78%)

Query:    16 HHPQKINCSQACNRRCKESSRKNMCHRACRTCCKRCHCVPPGTYGNKQACPCYASLRTHG 75
             HH  +INC  AC RRC ++SRK +CHRAC +CC +C CVPPGT GN  +CPCYAS+RTHG
Sbjct:    54 HHRPRINCGHACARRCSKTSRKKVCHRACGSCCAKCQCVPPGTSGNTASCPCYASIRTHG 113

Query:    76 NRPKCP 81
             N+ KCP
Sbjct:   114 NKLKCP 119

GO:0003674 "molecular_function" evidence=ND

GO:0005576 "extracellular region" evidence=ISM

GO:0009739 "response to gibberellin stimulus" evidence=ISS

TAIR|locus:2005634 GASA1 "AT1G75750" [Arabidopsis thaliana (taxid:3702)]

 Score = 262 (97.3 bits), Expect = 1.3e-22, P = 1.3e-22
 Identities = 45/76 (59%), Positives = 54/76 (71%)

Query:     7 SDVLDIHKKH-HPQKINCSQACNRRCKESSRKNMCHRACRTCCKRCHCVPPGTYGNKQAC 65
             +DV +  KK+ + +KI+C  AC  RC+ S R  +CHRAC TCC RC+CVPPGTYGN   C
Sbjct:    23 ADVENSQKKNGYAKKIDCGSACVARCRLSRRPRLCHRACGTCCYRCNCVPPGTYGNYDKC 82

Query:    66 PCYASLRTHGNRPKCP 81
              CYASL THG R KCP
Sbjct:    83 QCYASLTTHGGRRKCP 98

GO:0003674 "molecular_function" evidence=ND

GO:0005576 "extracellular region" evidence=ISM

GO:0009737 "response to abscisic acid stimulus" evidence=IDA

GO:0009739 "response to gibberellin stimulus" evidence=IMP;IDA

GO:0009741 "response to brassinosteroid stimulus" evidence=IMP

GO:0009826 "unidimensional cell growth" evidence=TAS

GO:0009505 "plant-type cell wall" evidence=IDA

GO:0005618 "cell wall" evidence=IDA

GO:0000271 "polysaccharide biosynthetic process" evidence=RCA

GO:0006569 "tryptophan catabolic process" evidence=RCA

GO:0009684 "indoleacetic acid biosynthetic process" evidence=RCA

GO:0009825 "multidimensional cell growth" evidence=RCA

GO:0009932 "cell tip growth" evidence=RCA

GO:0010817 "regulation of hormone levels" evidence=RCA

GO:0043481 "anthocyanin accumulation in tissues in response to UV light" evidence=RCA

GO:0048767 "root hair elongation" evidence=RCA

GO:0071555 "cell wall organization" evidence=RCA

TAIR|locus:2062175 AT2G18420 "AT2G18420" [Arabidopsis thaliana (taxid:3702)]

 Score = 249 (92.7 bits), Expect = 3.0e-21, P = 3.0e-21
 Identities = 41/71 (57%), Positives = 47/71 (66%)

Query:    11 DIHKKHHPQKINCSQACNRRCKESSRKNMCHRACRTCCKRCHCVPPGTYGNKQACPCYAS 70
             D+   +   KI+C+  C  RC  SSR N+CHRAC TCC RC+CV PGT GN   CPCY S
Sbjct:    24 DMVTSNDAPKIDCNSRCQERCSLSSRPNLCHRACGTCCARCNCVAPGTSGNYDKCPCYGS 83

Query:    71 LRTHGNRPKCP 81
             L THG R KCP
Sbjct:    84 LTTHGGRRKCP 94

GO:0003674 "molecular_function" evidence=ND

GO:0005576 "extracellular region" evidence=ISM

GO:0009739 "response to gibberellin stimulus" evidence=ISS

TAIR|locus:2136897 GASA2 "AT4G09610" [Arabidopsis thaliana (taxid:3702)]

 Score = 239 (89.2 bits), Expect = 3.5e-20, P = 3.5e-20
 Identities = 38/62 (61%), Positives = 44/62 (70%)

Query:    20 KINCSQACNRRCKESSRKNMCHRACRTCCKRCHCVPPGTYGNKQACPCYASLRTHGNRPK 79
             KI+C   C  RC +SSR  +C RAC +CC RC+CVPPGT GN   CPCYAS+ THG R K
Sbjct:    38 KIDCGGRCKDRCSKSSRTKLCLRACNSCCSRCNCVPPGTSGNTHLCPCYASITTHGGRLK 97

Query:    80 CP 81
             CP
Sbjct:    98 CP 99

GO:0003674 "molecular_function" evidence=ND

GO:0005576 "extracellular region" evidence=ISM

GO:0009739 "response to gibberellin stimulus" evidence=ISS

TAIR|locus:2136892 GASA3 "AT4G09600" [Arabidopsis thaliana (taxid:3702)]

 Score = 235 (87.8 bits), Expect = 9.2e-20, P = 9.2e-20
 Identities = 38/62 (61%), Positives = 44/62 (70%)

Query:    20 KINCSQACNRRCKESSRKNMCHRACRTCCKRCHCVPPGTYGNKQACPCYASLRTHGNRPK 79
             KI+C   C  RC +SSR N+C RAC +CC RC+CVPPGT GN   CPCYAS+ T G R K
Sbjct:    38 KIDCGGRCKGRCSKSSRPNLCLRACNSCCYRCNCVPPGTAGNHHLCPCYASITTRGGRLK 97

Query:    80 CP 81
             CP
Sbjct:    98 CP 99

GO:0003674 "molecular_function" evidence=ND

GO:0005576 "extracellular region" evidence=ISM

GO:0009739 "response to gibberellin stimulus" evidence=ISS;TAS

TAIR|locus:2147810 GASA14 "AT5G14920" [Arabidopsis thaliana (taxid:3702)]

 Score = 230 (86.0 bits), Expect = 3.1e-19, P = 3.1e-19
 Identities = 37/63 (58%), Positives = 46/63 (73%)

Query:    20 KINCSQACNRRCKESSRKNMCHRACRTCCKRCHCVPPGTYGNKQAC-PCYASLRTHGNRP 78
             +I+C   C  RC + SRKN+C RAC TCC RC CVPPGTYGNK+ C  CYA+++T G + 
Sbjct:   213 RIDCVPLCGTRCGQHSRKNVCMRACVTCCYRCKCVPPGTYGNKEKCGSCYANMKTRGGKS 272

Query:    79 KCP 81
             KCP
Sbjct:   273 KCP 275

GO:0009739 "response to gibberellin stimulus" evidence=ISS

GO:0005515 "protein binding" evidence=IPI

TAIR|locus:505006327 GASA5 "GAST1 protein homolog 5" [Arabidopsis thaliana (taxid:3702)]

 Score = 208 (78.3 bits), Expect = 6.7e-17, P = 6.7e-17
 Identities = 35/67 (52%), Positives = 43/67 (64%)

Query:    15 KHHPQKINCSQACNRRCKESSRKNMCHRACRTCCKRCHCVPPGTYGNKQACPCYASLRTH 74
             K  PQ+  C+  C+ RC  +S K  C   C  CCK+C CVPPGT+GNKQ CPCY + +T 
Sbjct:    33 KLKPQQ--CNSKCSFRCSATSHKKPCMFFCLKCCKKCLCVPPGTFGNKQTCPCYNNWKTK 90

Query:    75 GNRPKCP 81
               RPKCP
Sbjct:    91 EGRPKCP 97

GO:0005576 "extracellular region" evidence=ISM

GO:0009739 "response to gibberellin stimulus" evidence=ISS

GO:0009506 "plasmodesma" evidence=IDA

GO:0009408 "response to heat" evidence=IMP

GO:0009751 "response to salicylic acid stimulus" evidence=IMP

GO:0010286 "heat acclimation" evidence=IMP

TAIR|locus:4010713737 AT3G10185 [Arabidopsis thaliana (taxid:3702)]

 Score = 199 (75.1 bits), Expect = 6.0e-16, P = 6.0e-16
 Identities = 31/64 (48%), Positives = 36/64 (56%)

Query:    18 PQKINCSQACNRRCKESSRKNMCHRACRTCCKRCHCVPPGTYGNKQACPCYASLRTHGNR 77
             P  + C   C  RC  +  K  C   C  CC +C CVPPGTYGNKQ CPCY + +T    
Sbjct:    40 PPLLECGPRCGDRCSNTQYKKPCLFFCNKCCNKCLCVPPGTYGNKQVCPCYNNWKTKSGG 99

Query:    78 PKCP 81
             PKCP
Sbjct:   100 PKCP 103

GO:0005576 "extracellular region" evidence=ISM

TAIR|locus:2150896 GASA4 "AT5G15230" [Arabidopsis thaliana (taxid:3702)]

 Score = 194 (73.4 bits), Expect = 2.0e-15, P = 2.0e-15
 Identities = 33/78 (42%), Positives = 45/78 (57%)

Query:     7 SDVLDIHKKHHP---QKINCSQACNRRCKESSRKNMCHRACRTCCKRCHCVPPGTYGNKQ 63
             S+V    K++ P   ++  C   C+RRCK++     C   C  CC++C CVPPG YGNKQ
Sbjct:    29 SNVKWSQKRYGPGSLKRTQCPSECDRRCKKTQYHKACITFCNKCCRKCLCVPPGYYGNKQ 88

Query:    64 ACPCYASLRTHGNRPKCP 81
              C CY + +T    PKCP
Sbjct:    89 VCSCYNNWKTQEGGPKCP 106

GO:0003674 "molecular_function" evidence=ND

GO:0005576 "extracellular region" evidence=ISM

GO:0009740 "gibberellic acid mediated signaling pathway" evidence=TAS

GO:0045454 "cell redox homeostasis" evidence=IMP

GO:0019344 "cysteine biosynthetic process" evidence=RCA

GO:0009739 "response to gibberellin stimulus" evidence=IMP

TAIR|locus:2019195 GASA6 "AT1G74670" [Arabidopsis thaliana (taxid:3702)]

 Score = 193 (73.0 bits), Expect = 2.6e-15, P = 2.6e-15
 Identities = 30/59 (50%), Positives = 35/59 (59%)

Query:    23 CSQACNRRCKESSRKNMCHRACRTCCKRCHCVPPGTYGNKQACPCYASLRTHGNRPKCP 81
             C   C RRC  +     C   C+ CC +C CVPPGTYGNKQ CPCY + +T    PKCP
Sbjct:    43 CGGQCTRRCSNTKYHKPCMFFCQKCCAKCLCVPPGTYGNKQVCPCYNNWKTQQGGPKCP 101

GO:0003674 "molecular_function" evidence=ND

GO:0005576 "extracellular region" evidence=ISM

GO:0009739 "response to gibberellin stimulus" evidence=ISS

GO:0009740 "gibberellic acid mediated signaling pathway" evidence=RCA;TAS

GO:0009744 "response to sucrose stimulus" evidence=IEP

GO:0009749 "response to glucose stimulus" evidence=IEP

GO:0009750 "response to fructose stimulus" evidence=IEP

GO:0080167 "response to karrikin" evidence=IEP

GO:0010162 "seed dormancy process" evidence=RCA

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Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	81
pfam02704	60	pfam02704, GASA, Gibberellin regulated protein	2e-20

>gnl|CDD|190394 pfam02704, GASA, Gibberellin regulated protein

 Score = 76.2 bits (188), Expect = 2e-20
 Identities = 36/60 (60%), Positives = 42/60 (70%)

Query: 22 NCSQACNRRCKESSRKNMCHRACRTCCKRCHCVPPGTYGNKQACPCYASLRTHGNRPKCP 81
          +C   C  RC ++SRK  C RAC  CC +C CVPPGTYGNK  CPCY + +THG RPKCP
Sbjct: 1  DCGGKCAVRCSKTSRKKPCLRACGKCCAKCLCVPPGTYGNKDECPCYNNWKTHGGRPKCP 60

This is the GASA gibberellin regulated cysteine rich protein family. The expression of these proteins is up-regulated by the plant hormone gibberellin, most of these proteins have some role in plant development. There are 12 cysteine residues conserved within the alignment giving the potential for these proteins to posses 6 disulphide bonds. Length = 60

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	81
PF02704	60	GASA: Gibberellin regulated protein; InterPro: IPR	100.0

>PF02704 GASA: Gibberellin regulated protein; InterPro: IPR003854 This is the GASA gibberellin regulated cysteine rich protein family

Probab=100.00  E-value=1.4e-37  Score=195.99  Aligned_cols=60  Identities=62%  Similarity=1.528  Sum_probs=59.4

Q ss_pred             CchHHhhHHHhcCCchhHHHHHHHhhcCcccccCCCCCCCCCCCCccccccccCCCCCCC
Q 034862           22 NCSQACNRRCKESSRKNMCHRACRTCCKRCHCVPPGTYGNKQACPCYASLRTHGNRPKCP   81 (81)
Q Consensus        22 ~C~~~C~~RCs~~~~~~~C~~~C~~CC~kC~CVP~GTyGnk~~CPCY~~m~t~~g~pKCP   81 (81)
                      ||+++|++|||+++++++||+|||+||++|+|||||||||+|+||||+||+||+|+||||
T Consensus         1 ~C~~~C~~RCs~~~~~~~C~~~C~~CC~~C~CVP~GT~gn~~~CpCY~~m~t~~g~pKCP   60 (60)
T PF02704_consen    1 DCGGACSVRCSKASRKKRCMRACGTCCAKCKCVPPGTYGNKEECPCYRDMKTHGGKPKCP   60 (60)
T ss_pred             CcchHHHHHHhccCCchHHHHHHHHHhccCcccCCCCCCCCccCCChhhhhccCCCCCCc
Confidence            699999999999999999999999999999999999999999999999999999999999

The expression of these proteins is up-regulated by the plant hormone gibberellin, most of these proteins have some role in plant development. There are 12 cysteine residues conserved within the alignment giving the potential for these proteins to posses 6 disulphide bonds.

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00