Citrus Sinensis ID: 034894

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80
Protein Sequence
MSKSCKGLAMELVKCLSESDCVKVEKRSFRECAGEKSPCIPSECVGLRETYFNCKRGQACSLFSSFHICFLFLLTSSENL
Secondary Structure (PSIPRED)
cccHHHHHHHHHHHHHHHccccccccccHHHHHcccccccHHHHHHHHHHHHHcccccHHHHHHHccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHHHHHHHHccccHEEccccHHHHHccccccccHHHHHHHHcHHHccccHHHHHHHHHHHHHHHHHHccccc
Coil and Loop (DISEMBL)
MSKSCKGLAMELVKClsesdcvkvekrsfrecagekspcipsecvglretyfnckrgqacslFSSFHICFLFLLTSSENL
Flexible Loop (DISEMBL)
MSKSCKGLAMELVkclsesdcvKVEKRsfrecagekspcipsecvGLRETYFNCKRGQACSLFSSFHICFLFLLTSSENL
Low Complexity Region (SEG)
MSKSCKGLAMELVKCLSESDCVKVEKRSFRECAGEKSPCIPSECVGLRETYFNCKRGQACSLFSSFHICFLFLLTSSENL
Disordered region (IsUnstruct)
*******LAMELVKCLSESDCVKVEKRSFRECAGEKSPCIPSECVGLRETYFNCKRGQACSLFSSFHICFLFLLT*****
Disordered Region (DISOPRED)
***SCKGLAMELVKCLSESDCVKVEKRSFRECAGEKSPCIPSECVGLRETYFNCKRGQACSLFSSFHICFLFL*******
Disordered Region (DISEMBL)
MSKSCKGLAMELVKCLSESDCVKVEKRSFRECAGEKSPCIPSECVGLRETYFNCKRGQACSLFSSFHICFLFLLTSSENL
Disordered Region (DISPRO)
***SCKGLAMELVKCLSESDCVKVEKRSFRECAGEKSPCIPSECVGLRETYFNCKRGQACSLFSSFHICFLFLLTSS***
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiii
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MSKSCKGLAMELVKCLSESDCVKVEKRSFRECAGEKSPCIPSECVGLRETYFNCKRGQACSLFSSFHICFLFLLTSSENL
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	80	2.2.26 [Sep-21-2011]
O42921	85	Mitochondrial protein pet	yes	no	0.825	0.776	0.411	4e-05

>sp|O42921|PT191_SCHPO Mitochondrial protein pet191 homolog OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBC16A3.16 PE=3 SV=1

 Score = 47.0 bits (110), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 28/68 (41%), Positives = 37/68 (54%), Gaps = 2/68 (2%)

Query: 1  MSKSCKGLAMELVKCLSESDCVKVEKRSFRECAGEKSPCIPSECVGLRETYFNCKRGQAC 60
          M +SCK +  +L  CL  SDC+ V+K+S REC   K   +P EC  L E Y  CKR Q  
Sbjct: 1  MGRSCKVIREDLANCLLHSDCMFVKKKSARECLKNKDE-LPEECKNLIEAYGECKR-QML 58

Query: 61 SLFSSFHI 68
           +   + I
Sbjct: 59 DMTKRYRI 66

Involved in the assembly of cytochrome c oxidase.
Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	80
255545096	71	conserved hypothetical protein [Ricinus	0.725	0.816	0.948	5e-24
356544094	71	PREDICTED: cytochrome c oxidase assembly	0.737	0.830	0.932	6e-24
449449374	71	PREDICTED: cytochrome c oxidase assembly	0.737	0.830	0.915	6e-24
307136386	84	hypothetical protein [Cucumis melo subsp	0.837	0.797	0.820	6e-24
356549657	71	PREDICTED: cytochrome c oxidase assembly	0.737	0.830	0.915	2e-23
224097480	59	predicted protein [Populus trichocarpa]	0.737	1.0	0.881	5e-23
115480193	75	Os09g0518800 [Oryza sativa Japonica Grou	0.925	0.986	0.716	3e-22
357452159	83	hypothetical protein MTR_2g076300 [Medic	1.0	0.963	0.65	7e-22
225443144	71	PREDICTED: cytochrome c oxidase assembly	0.737	0.830	0.898	9e-22
225443162	71	PREDICTED: cytochrome c oxidase assembly	0.737	0.830	0.898	1e-21

>gi|255545096|ref|XP_002513609.1| conserved hypothetical protein [Ricinus communis] gi|223547517|gb|EEF49012.1| conserved hypothetical protein [Ricinus communis]

 Score =  115 bits (287), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 55/58 (94%), Positives = 57/58 (98%)

Query: 1  MSKSCKGLAMELVKCLSESDCVKVEKRSFRECAGEKSPCIPSECVGLRETYFNCKRGQ 58
          M+KSCKGLAMELVKCLSESDCVKVEKR +RECAGEKSPCIPSECVGLRETYFNCKRGQ
Sbjct: 1  MAKSCKGLAMELVKCLSESDCVKVEKRPYRECAGEKSPCIPSECVGLRETYFNCKRGQ 58

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356544094|ref|XP_003540490.1| PREDICTED: cytochrome c oxidase assembly factor 5-like [Glycine max]

 Score =  114 bits (286), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 55/59 (93%), Positives = 57/59 (96%)

Query: 1  MSKSCKGLAMELVKCLSESDCVKVEKRSFRECAGEKSPCIPSECVGLRETYFNCKRGQA 59
          MSKSCKGLAMELVKCLSESDCVKVEKRS++EC GEKSPCIPSECVGLRETYFNCKRGQ 
Sbjct: 1  MSKSCKGLAMELVKCLSESDCVKVEKRSYKECVGEKSPCIPSECVGLRETYFNCKRGQV 59

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449449374|ref|XP_004142440.1| PREDICTED: cytochrome c oxidase assembly factor 5-like [Cucumis sativus] gi|449487146|ref|XP_004157510.1| PREDICTED: cytochrome c oxidase assembly factor 5-like [Cucumis sativus]

 Score =  114 bits (286), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 54/59 (91%), Positives = 57/59 (96%)

Query: 1  MSKSCKGLAMELVKCLSESDCVKVEKRSFRECAGEKSPCIPSECVGLRETYFNCKRGQA 59
          MSKSCKGLAMELVKCLSESDCVKV+ R++RECAGEKSPCIPSECVGLRETYFNCKRGQ 
Sbjct: 1  MSKSCKGLAMELVKCLSESDCVKVQNRTYRECAGEKSPCIPSECVGLRETYFNCKRGQV 59

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|307136386|gb|ADN34196.1| hypothetical protein [Cucumis melo subsp. melo]

 Score =  114 bits (286), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 55/67 (82%), Positives = 60/67 (89%)

Query: 1  MSKSCKGLAMELVKCLSESDCVKVEKRSFRECAGEKSPCIPSECVGLRETYFNCKRGQAC 60
          MSKSCKGLAMELVKCLSESDCVKV+ R++RECAGEKSPCIPSECVGLRETYFNCKRGQ  
Sbjct: 1  MSKSCKGLAMELVKCLSESDCVKVQNRTYRECAGEKSPCIPSECVGLRETYFNCKRGQII 60

Query: 61 SLFSSFH 67
            F  ++
Sbjct: 61 CHFLIYY 67

Source: Cucumis melo subsp. melo

Species: Cucumis melo

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356549657|ref|XP_003543208.1| PREDICTED: cytochrome c oxidase assembly factor 5 [Glycine max] gi|255630764|gb|ACU15743.1| unknown [Glycine max]

 Score =  113 bits (282), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 54/59 (91%), Positives = 56/59 (94%)

Query: 1  MSKSCKGLAMELVKCLSESDCVKVEKRSFRECAGEKSPCIPSECVGLRETYFNCKRGQA 59
          MSKSCKGLAMELVKCLSESDCVKVEKRS++EC GEKSPCIPSEC GLRETYFNCKRGQ 
Sbjct: 1  MSKSCKGLAMELVKCLSESDCVKVEKRSYKECVGEKSPCIPSECAGLRETYFNCKRGQV 59

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224097480|ref|XP_002310953.1| predicted protein [Populus trichocarpa] gi|222850773|gb|EEE88320.1| predicted protein [Populus trichocarpa]

 Score =  111 bits (278), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 52/59 (88%), Positives = 57/59 (96%)

Query: 1  MSKSCKGLAMELVKCLSESDCVKVEKRSFRECAGEKSPCIPSECVGLRETYFNCKRGQA 59
          MSKSCKGLAMELVKCLSESDC+K+E RS+++CAGEKSP IPSECVGLRETYFNCKRGQA
Sbjct: 1  MSKSCKGLAMELVKCLSESDCIKIENRSYKDCAGEKSPSIPSECVGLRETYFNCKRGQA 59

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|115480193|ref|NP_001063690.1| Os09g0518800 [Oryza sativa Japonica Group] gi|50725336|dbj|BAD34409.1| hypothetical protein [Oryza sativa Japonica Group] gi|53792093|dbj|BAD54696.1| hypothetical protein [Oryza sativa Japonica Group] gi|113631923|dbj|BAF25604.1| Os09g0518800 [Oryza sativa Japonica Group] gi|125564398|gb|EAZ09778.1| hypothetical protein OsI_32066 [Oryza sativa Indica Group] gi|125606353|gb|EAZ45389.1| hypothetical protein OsJ_30035 [Oryza sativa Japonica Group]

 Score =  108 bits (271), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 53/74 (71%), Positives = 61/74 (82%)

Query: 1  MSKSCKGLAMELVKCLSESDCVKVEKRSFRECAGEKSPCIPSECVGLRETYFNCKRGQAC 60
          M+KSCKGLAMELVKCLSE+DCVKV+KR ++ECAGEK P I SECVGLRETYFNCKRGQAC
Sbjct: 1  MAKSCKGLAMELVKCLSETDCVKVQKRPYKECAGEKVPNITSECVGLRETYFNCKRGQAC 60

Query: 61 SLFSSFHICFLFLL 74
              + + C  + L
Sbjct: 61 VPPPALNHCRNYQL 74

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357452159|ref|XP_003596356.1| hypothetical protein MTR_2g076300 [Medicago truncatula] gi|355485404|gb|AES66607.1| hypothetical protein MTR_2g076300 [Medicago truncatula]

 Score =  107 bits (268), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 52/80 (65%), Positives = 63/80 (78%)

Query: 1  MSKSCKGLAMELVKCLSESDCVKVEKRSFRECAGEKSPCIPSECVGLRETYFNCKRGQAC 60
          MSKSCKGLAMELVKCLSE+DCVKV+ RS++ECAGEK+P I +ECVGLRETYFNCKRGQA 
Sbjct: 1  MSKSCKGLAMELVKCLSETDCVKVDNRSYKECAGEKTPSISAECVGLRETYFNCKRGQAN 60

Query: 61 SLFSSFHICFLFLLTSSENL 80
                  C +  + S+ ++
Sbjct: 61 VSVLDGDTCRIPSMPSTRSV 80

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225443144|ref|XP_002263356.1| PREDICTED: cytochrome c oxidase assembly factor 5 [Vitis vinifera] gi|298204693|emb|CBI25191.3| unnamed protein product [Vitis vinifera]

 Score =  107 bits (267), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 53/59 (89%), Positives = 55/59 (93%)

Query: 1  MSKSCKGLAMELVKCLSESDCVKVEKRSFRECAGEKSPCIPSECVGLRETYFNCKRGQA 59
          MSKSCKGLAMELVKCLSE+DCVKVEKRSF+EC GEKSP I SECVGLRETYFNCKRGQ 
Sbjct: 1  MSKSCKGLAMELVKCLSETDCVKVEKRSFKECCGEKSPSISSECVGLRETYFNCKRGQV 59

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225443162|ref|XP_002264124.1| PREDICTED: cytochrome c oxidase assembly factor 5 [Vitis vinifera] gi|298204681|emb|CBI25179.3| unnamed protein product [Vitis vinifera]

 Score =  107 bits (267), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 53/59 (89%), Positives = 55/59 (93%)

Query: 1  MSKSCKGLAMELVKCLSESDCVKVEKRSFRECAGEKSPCIPSECVGLRETYFNCKRGQA 59
          MSKSCKGLAMELVKCLSE+DCVKVEKRSF+EC GEKSP I SECVGLRETYFNCKRGQ 
Sbjct: 1  MSKSCKGLAMELVKCLSETDCVKVEKRSFKECCGEKSPLISSECVGLRETYFNCKRGQV 59

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	80
TAIR|locus:4010713430	71	AT1G10865 "AT1G10865" [Arabido	0.725	0.816	0.879	5.3e-24
POMBASE|SPBC16A3.16	85	SPBC16A3.16 "mitochondrial inn	0.687	0.647	0.464	1.2e-08
WB|WBGene00012483	96	Y18D10A.16 [Caenorhabditis ele	0.662	0.552	0.351	7e-06
UNIPROTKB|E1C792	75	COA5 "Uncharacterized protein"	0.6	0.64	0.407	2.4e-05
SGD|S000003795	108	PET191 "Protein required for a	0.712	0.527	0.322	8.1e-05
UNIPROTKB|F1STD9	74	COA5 "Uncharacterized protein"	0.587	0.635	0.396	0.00013
UNIPROTKB|Q3ZCK8	74	COA5 "Cytochrome c oxidase ass	0.587	0.635	0.377	0.00021
UNIPROTKB|Q86WW8	74	COA5 "Cytochrome c oxidase ass	0.587	0.635	0.396	0.00021

TAIR|locus:4010713430 AT1G10865 "AT1G10865" [Arabidopsis thaliana (taxid:3702)]

 Score = 275 (101.9 bits), Expect = 5.3e-24, P = 5.3e-24
 Identities = 51/58 (87%), Positives = 53/58 (91%)

Query:     1 MSKSCKGLAMELVKCLSESDCVKVEKRSFRECAGEKSPCIPSECVGLRETYFNCKRGQ 58
             M+KSCKGLA ELVKCLSES CVK EKRS R+C GEKSPCIPSECVGLRETYFNCKRGQ
Sbjct:     1 MAKSCKGLAEELVKCLSESICVKGEKRSIRDCTGEKSPCIPSECVGLRETYFNCKRGQ 58

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

POMBASE|SPBC16A3.16 SPBC16A3.16 "mitochondrial inner membrane protein involved in cytochrome c oxidase assembly Pet191 (predicted)" [Schizosaccharomyces pombe (taxid:4896)]

 Score = 130 (50.8 bits), Expect = 1.2e-08, P = 1.2e-08
 Identities = 26/56 (46%), Positives = 33/56 (58%)

Query:     1 MSKSCKGLAMELVKCLSESDCVKVEKRSFRECAGEKSPCIPSECVGLRETYFNCKR 56
             M +SCK +  +L  CL  SDC+ V+K+S REC   K   +P EC  L E Y  CKR
Sbjct:     1 MGRSCKVIREDLANCLLHSDCMFVKKKSARECLKNKDE-LPEECKNLIEAYGECKR 55

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=IDA

GO:0005739 "mitochondrion" evidence=ISO

GO:0005829 "cytosol" evidence=IDA

GO:0007005 "mitochondrion organization" evidence=IC

GO:0008535 "respiratory chain complex IV assembly" evidence=ISO

WB|WBGene00012483 Y18D10A.16 [Caenorhabditis elegans (taxid:6239)]

 Score = 104 (41.7 bits), Expect = 7.0e-06, P = 7.0e-06
 Identities = 19/54 (35%), Positives = 30/54 (55%)

Query:     4 SCKGLAMELVKCLSESDCVKVEKRSFRECAGEKSP-CIPSECVGLRETYFNCKR 56
             SC  L   L KC+  S CV+V+ RS +EC   +    +P +C  + + + +CKR
Sbjct:    27 SCDRLRQALKKCIKNSHCVQVQARSAKECIDARGDGSVPDKCFAVLQNFTDCKR 80

GO:0040010 "positive regulation of growth rate" evidence=IMP

UNIPROTKB|E1C792 COA5 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 99 (39.9 bits), Expect = 2.4e-05, P = 2.4e-05
 Identities = 22/54 (40%), Positives = 31/54 (57%)

Query:     3 KSCKGLAMELVKCLSESDCVKVEKRSFRECAGEKSPCIPSECVGLRETYFNCKR 56
             ++C G+  +L +CL ES CV  E +S R+C  E        C GL+ T+F CKR
Sbjct:    13 QACSGVREDLRQCLLESPCVLQENKSPRQCLRE------GHCKGLQLTFFACKR 60

GO:0005739 "mitochondrion" evidence=IEA

SGD|S000003795 PET191 "Protein required for assembly of cytochrome c oxidase" [Saccharomyces cerevisiae (taxid:4932)]

 Score = 94 (38.1 bits), Expect = 8.1e-05, P = 8.1e-05
 Identities = 19/59 (32%), Positives = 30/59 (50%)

Query:     1 MSKSCKGLAMELVKCLSESDCVKVEKRSFRECAG--EKSPCIPSECVGLRETYFNCKRG 57
             M  SCK     +  CL  S CV +E+ + +EC    E +  +P  C+   + + +CKRG
Sbjct:     1 MVASCKDQKKAVAICLQRSPCVMIERHNPQECLDNPELNKDLPELCIAQMKAFLDCKRG 59

GO:0003674 "molecular_function" evidence=ND

GO:0033617 "mitochondrial respiratory chain complex IV assembly" evidence=IMP

GO:0005758 "mitochondrial intermembrane space" evidence=IDA

GO:0005739 "mitochondrion" evidence=IEA;IDA

GO:0031305 "integral to mitochondrial inner membrane" evidence=IDA

UNIPROTKB|F1STD9 COA5 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 92 (37.4 bits), Expect = 0.00013, P = 0.00013
 Identities = 21/53 (39%), Positives = 30/53 (56%)

Query:     4 SCKGLAMELVKCLSESDCVKVEKRSFRECAGEKSPCIPSECVGLRETYFNCKR 56
             +C G+  +L  CL +SDCV  E +S R+C  E S      C  L+ ++F CKR
Sbjct:    13 ACAGVKEDLGACLLQSDCVLQEGKSPRQCLKEGS------CKALQYSFFECKR 59

GO:0005739 "mitochondrion" evidence=IEA

UNIPROTKB|Q3ZCK8 COA5 "Cytochrome c oxidase assembly factor 5" [Bos taurus (taxid:9913)]

 Score = 90 (36.7 bits), Expect = 0.00021, P = 0.00021
 Identities = 20/53 (37%), Positives = 29/53 (54%)

Query:     4 SCKGLAMELVKCLSESDCVKVEKRSFRECAGEKSPCIPSECVGLRETYFNCKR 56
             +C G+  +L  CL +SDCV  E +S R+C  E        C  L+ ++F CKR
Sbjct:    13 ACAGVKEDLGLCLLQSDCVLKEGKSPRQCLKE------GNCKALKYSFFECKR 59

GO:0005739 "mitochondrion" evidence=IEA

UNIPROTKB|Q86WW8 COA5 "Cytochrome c oxidase assembly factor 5" [Homo sapiens (taxid:9606)]

 Score = 90 (36.7 bits), Expect = 0.00021, P = 0.00021
 Identities = 21/53 (39%), Positives = 28/53 (52%)

Query:     4 SCKGLAMELVKCLSESDCVKVEKRSFRECAGEKSPCIPSECVGLRETYFNCKR 56
             +C GL  +L  CL +SDCV  E +S R+C  E        C  L+  +F CKR
Sbjct:    13 ACAGLKEDLGACLLQSDCVVQEGKSPRQCLKE------GYCNSLKYAFFECKR 59


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.325   0.135   0.427    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0       80        80   0.00091  102 3  11 22  0.50    28
                                                     29  0.41    30


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  8
  No. of states in DFA:  539 (57 KB)
  Total size of DFA:  107 KB (2072 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  9.40u 0.25s 9.65t   Elapsed:  00:00:01
  Total cpu time:  9.40u 0.25s 9.65t   Elapsed:  00:00:01
  Start:  Fri May 10 03:12:57 2013   End:  Fri May 10 03:12:58 2013

GO:0005739 "mitochondrion" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: eugene3.00080077 hypothetical protein (59 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	80
pfam10203	68	pfam10203, Pet191_N, Cytochrome c oxidase assembly	1e-22

>gnl|CDD|192483 pfam10203, Pet191_N, Cytochrome c oxidase assembly protein PET191

 Score = 81.9 bits (203), Expect = 1e-22
 Identities = 32/60 (53%), Positives = 39/60 (65%)

Query: 1  MSKSCKGLAMELVKCLSESDCVKVEKRSFRECAGEKSPCIPSECVGLRETYFNCKRGQAC 60
          M  SCKGL  +L +CL ESDCVK EKR+ REC  E    +P EC+ LR+ +F CKRG   
Sbjct: 1  MGSSCKGLREDLAECLLESDCVKKEKRTPRECLKEPLKELPEECIALRKAFFECKRGMLD 60

Pet191_N is the conserved N-terminal of a family of conserved proteins found from nematodes to humans. It carries six highly conserved cysteine residues. Pet191 is required for the assembly of active cytochrome c oxidase but does not form part of the final assembled complex. Length = 68

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	80
PF10203	68	Pet191_N: Cytochrome c oxidase assembly protein PE	100.0
KOG4114	73	consensus Cytochrome c oxidase assembly protein PE	99.97
PF06747	35	CHCH: CHCH domain; InterPro: IPR010625 A conserved	82.34

>PF10203 Pet191_N: Cytochrome c oxidase assembly protein PET191; InterPro: IPR018793 This entry represents a family of conserved proteins found from nematodes to humans

Probab=100.00  E-value=2e-36  Score=190.57  Aligned_cols=65  Identities=48%  Similarity=0.836  Sum_probs=64.4

Q ss_pred             CcchHHHHHHHHHHHHhcCccccccCCChhHHhCCCCCCCchhhHHHHhHHHhcccCcccCcchH
Q 034894            1 MSKSCKGLAMELVKCLSESDCVKVEKRSFRECAGEKSPCIPSECVGLRETYFNCKRGQACSLFSS   65 (80)
Q Consensus         1 M~~SCk~lr~~L~~CL~~SdCv~~~~~tpkeCL~~~~~~lP~eC~~Lr~affeCKRgmlDmr~rf   65 (80)
                      |++||+++++||++||++||||+++++||+|||+++++++|+||++|+++||||||||||||+||
T Consensus         1 m~~sC~~~~~~L~~Cl~~SdCv~~~~~t~~~Cl~~~~~~~p~eC~~lr~~f~eCKrg~lDmr~Rf   65 (68)
T PF10203_consen    1 MSKSCKGIREALAECLQESDCVKKEKRTPKDCLKDPSDELPEECQQLRKAFFECKRGMLDMRKRF   65 (68)
T ss_pred             CCchHHHHHHHHHHHHhhChhhccCCCCHHHHHcCCCCcCCHHHHHHHHHHHHHhcccccccccc
Confidence            99999999999999999999999999999999999999999999999999999999999999998

Cytochrome c oxidase assembly protein Pet191 carries six highly conserved cysteine residues. Pet191 is required for the assembly of active cytochrome c oxidase but does not form part of the final assembled complex [].

>KOG4114 consensus Cytochrome c oxidase assembly protein PET191 [Posttranslational modification, protein turnover, chaperones]

Probab=99.97  E-value=8.9e-32  Score=172.21  Aligned_cols=66  Identities=36%  Similarity=0.611  Sum_probs=63.4

Q ss_pred             CcchHHHHHHHHHHHHhcCccccccCCChhHHhCCC-CCCCchhhHHHHhHHHhcccCcccCcchHH
Q 034894            1 MSKSCKGLAMELVKCLSESDCVKVEKRSFRECAGEK-SPCIPSECVGLRETYFNCKRGQACSLFSSF   66 (80)
Q Consensus         1 M~~SCk~lr~~L~~CL~~SdCv~~~~~tpkeCL~~~-~~~lP~eC~~Lr~affeCKRgmlDmr~rf~   66 (80)
                      |+.||+++|+||+.||++||||+++++||+|||.++ ..+||+||++++++|.+|||||||||+||-
T Consensus         1 ~g~sC~~~r~alk~Cl~~S~Cv~v~~ks~reCldn~~~~~vPeeC~al~~af~dCKRslvDmrkRfr   67 (73)
T KOG4114|consen    1 MGASCKDQRKALKICLLRSDCVMVERKSPRECLDNPELKDVPEECIALMKAFLDCKRSLVDMRKRFR   67 (73)
T ss_pred             CcccHHHHHHHHHHHHhcCcceeeecCCHHHHhcCCccccCcHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence            789999999999999999999999999999999997 567999999999999999999999999993

>PF06747 CHCH: CHCH domain; InterPro: IPR010625 A conserved motif was identified in the LOC118487 protein was called the CHCH motif

Probab=82.34  E-value=0.55  Score=24.79  Aligned_cols=27  Identities=22%  Similarity=0.383  Sum_probs=20.3

Q ss_pred             hhHHhCCCCCCCchhhHHHHhHHHhccc
Q 034894           29 FRECAGEKSPCIPSECVGLRETYFNCKR   56 (80)
Q Consensus        29 pkeCL~~~~~~lP~eC~~Lr~affeCKR   56 (80)
                      +-+|++++..+ .+.|+.+.++|.+|+.
T Consensus         8 ~~~Cl~~n~~~-~~~C~~~~~~~~~C~~   34 (35)
T PF06747_consen    8 YLACLKENNFD-WSKCRKEFKAYKECRM   34 (35)
T ss_dssp             HHHHHHCH-SS-TCCCHHHHHHHHHHHC
T ss_pred             HHHHHHHCCCc-HHhhHHHHHHHHHHhh
Confidence            45677765433 7799999999999975

Alignment of this protein with related members showed the presence of three subgroups of proteins, which are called the S (Small), N (N-terminal extended) and C (C-terminal extended) subgroups. All three sub-groups of proteins have in common that they contain a predicted conserved [coiled coil 1]-[helix 1]-[coiled coil 2]-[helix 2] domain (CHCH domain). Within each helix of the CHCH domain, there are two cysteines present in a C-X9-C motif. The N-group contains an additional double helix domain, and each helix contains the C-X9-C motif. This family contains a number of characterised proteins: Cox19 protein - a nuclear gene of Saccharomyces cerevisiae, codes for an 11 kDa protein (Cox19p) required for expression of cytochrome oxidase. Because cox19 mutants are able to synthesise the mitochondrial and nuclear gene products of cytochrome oxidase, Cox19p probably functions post-translationally during assembly of the enzyme. Cox19p is present in the cytoplasm and mitochondria, where it exists as a soluble intermembrane protein. This dual location is similar to what was previously reported for Cox17p, a low molecular weight copper protein thought to be required for maturation of the CuA centre of subunit 2 of cytochrome oxidase. Cox19p have four conserved potential metal ligands, these are three cysteines and one histidine. Mrp10 - belongs to the class of yeast mitochondrial ribosomal proteins that are essential for translation []. Eukaryotic NADH-ubiquinone oxidoreductase 19 kDa (NDUFA8) subunit []. The CHCH domain was previously called DUF657 []. ; PDB: 2ZXT_A 3A3C_A 2L0Y_A 2K3J_A.

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00