Citrus Sinensis ID: 034896

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80
Protein Sequence
MNWFERMRSFLCGGSTGVFIYAYCLYYYYARSDMSGFMQTSFFFGYMACVCYGFFLMLGTVGFRASLLFVRHIYKSIKCE
Secondary Structure (PSIPRED)
ccccccHHHccccHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc
Secondary Structure Prediction (SSPRO)
ccccHHHHHHHHcHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccc
Coil and Loop (DISEMBL)
MNWFERMRSFLCGGSTGVFIYAYCLYYYYArsdmsgfmqtsFFFGYMACVCYGFFLMLGTVGFRASLLFVRHIYKSIKCE
Flexible Loop (DISEMBL)
MNWFERMRSFLCGGSTGVFIYAYCLYYYYARSDMSGFMQTSFFFGYMACVCYGFFLMLGTVGFRASLLFVRHIYKSIKCE
Low Complexity Region (SEG)
MNWFERMRSFLCGGSTGVFIyayclyyyyaRSDMSGFMQTSFFFGYMACVCYGFFLMLGTVGFRASLLFVRHIYKSIKCE
Disordered region (IsUnstruct)
**WFERMRSFLCGGSTGVFIYAYCLYYYYARSDMSGFMQTSFFFGYMACVCYGFFLMLGTVGFRASLLFVRHIYKSI***
Disordered Region (DISOPRED)
MNWFERMRSFLCGGSTGVFIYAYCLYYYYARSDMSGFMQTSFFFGYMACVCYGFFLMLGTVGFRASLLFVRHIYKSIKCE
Disordered Region (DISEMBL)
MNWFERMRSFLCGGSTGVFIYAYCLYYYYARSDMSGFMQTSFFFGYMACVCYGFFLMLGTVGFRASLLFVRHIYKSIKCE
Disordered Region (DISPRO)
MNWFERMRSFLCGGSTGVFIYAYCLYYYYARSDMSGFMQTSFFFGYMACVCYGFFLMLGTVGFRASLLFVRHIYKSIKC*
Transmembrane Helix (TMHMM)
iiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
iiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
iiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MNWFERMRSFLCGGSTGVFIYAYCLYYYYARSDMSGFMQTSFFFGYMACVCYGFFLMLGTVGFRASLLFVRHIYKSIKCE
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	80	2.2.26 [Sep-21-2011]
A4IFE9	606	Transmembrane 9 superfami	yes	no	0.912	0.120	0.534	1e-13
O15321	606	Transmembrane 9 superfami	yes	no	0.912	0.120	0.534	1e-13
Q5R8F1	606	Transmembrane 9 superfami	yes	no	0.912	0.120	0.534	2e-13
Q9DBU0	606	Transmembrane 9 superfami	yes	no	0.912	0.120	0.534	2e-13
Q66HF2	589	Transmembrane 9 superfami	yes	no	0.912	0.123	0.534	2e-13
Q54ZW0	587	Putative phagocytic recep	yes	no	0.912	0.124	0.547	3e-10
Q5RDY2	642	Transmembrane 9 superfami	no	no	0.912	0.113	0.342	5e-09
Q92544	642	Transmembrane 9 superfami	no	no	0.912	0.113	0.342	5e-09
A5D7E2	642	Transmembrane 9 superfami	no	no	0.912	0.113	0.342	6e-09
Q4KLL4	643	Transmembrane 9 superfami	no	no	0.912	0.113	0.328	2e-08

>sp|A4IFE9|TM9S1_BOVIN Transmembrane 9 superfamily member 1 OS=Bos taurus GN=TM9SF1 PE=2 SV=1

 Score = 75.1 bits (183), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 39/73 (53%), Positives = 52/73 (71%)

Query: 8   RSFLCGGSTGVFIYAYCLYYYYARSDMSGFMQTSFFFGYMACVCYGFFLMLGTVGFRASL 67
           RS L  GSTG+FI+ Y ++YY  RS+MSG +QT  FFGY     Y FFLMLGT+ F +SL
Sbjct: 534 RSVLSVGSTGLFIFLYSVFYYARRSNMSGTVQTVEFFGYSLLTGYVFFLMLGTISFFSSL 593

Query: 68  LFVRHIYKSIKCE 80
            F+R+IY ++K +
Sbjct: 594 KFIRYIYVNLKMD 606

Plays an essential role in autophagy.
Bos taurus (taxid: 9913)

>sp|O15321|TM9S1_HUMAN Transmembrane 9 superfamily member 1 OS=Homo sapiens GN=TM9SF1 PE=2 SV=2

 Score = 74.7 bits (182), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 39/73 (53%), Positives = 52/73 (71%)

Query: 8   RSFLCGGSTGVFIYAYCLYYYYARSDMSGFMQTSFFFGYMACVCYGFFLMLGTVGFRASL 67
           RS L  GSTG+FI+ Y ++YY  RS+MSG +QT  FFGY     Y FFLMLGT+ F +SL
Sbjct: 534 RSVLSVGSTGLFIFLYSVFYYARRSNMSGAVQTVEFFGYSLLTGYVFFLMLGTISFFSSL 593

Query: 68  LFVRHIYKSIKCE 80
            F+R+IY ++K +
Sbjct: 594 KFIRYIYVNLKMD 606

Plays an essential role in autophagy.

Homo sapiens (taxid: 9606)

>sp|Q5R8F1|TM9S1_PONAB Transmembrane 9 superfamily member 1 OS=Pongo abelii GN=TM9SF1 PE=2 SV=1

 Score = 74.7 bits (182), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 39/73 (53%), Positives = 52/73 (71%)

Query: 8   RSFLCGGSTGVFIYAYCLYYYYARSDMSGFMQTSFFFGYMACVCYGFFLMLGTVGFRASL 67
           RS L  GSTG+FI+ Y ++YY  RS+MSG +QT  FFGY     Y FFLMLGT+ F +SL
Sbjct: 534 RSVLSVGSTGLFIFLYSVFYYARRSNMSGAVQTVEFFGYSLLTGYVFFLMLGTISFFSSL 593

Query: 68  LFVRHIYKSIKCE 80
            F+R+IY ++K +
Sbjct: 594 KFIRYIYVNLKMD 606

Plays an essential role in autophagy.

Pongo abelii (taxid: 9601)

>sp|Q9DBU0|TM9S1_MOUSE Transmembrane 9 superfamily member 1 OS=Mus musculus GN=Tm9sf1 PE=2 SV=2

 Score = 74.7 bits (182), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 39/73 (53%), Positives = 52/73 (71%)

Query: 8   RSFLCGGSTGVFIYAYCLYYYYARSDMSGFMQTSFFFGYMACVCYGFFLMLGTVGFRASL 67
           RS L  GSTG+FI+ Y ++YY  RS+MSG +QT  FFGY     Y FFLMLGT+ F +SL
Sbjct: 534 RSVLSVGSTGLFIFLYSVFYYARRSNMSGAVQTVEFFGYSLLTGYVFFLMLGTISFFSSL 593

Query: 68  LFVRHIYKSIKCE 80
            F+R+IY ++K +
Sbjct: 594 KFIRYIYVNLKMD 606

Plays an essential role in autophagy.

Mus musculus (taxid: 10090)

>sp|Q66HF2|TM9S1_RAT Transmembrane 9 superfamily member 1 OS=Rattus norvegicus GN=Tm9sf1 PE=2 SV=1

 Score = 74.3 bits (181), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 39/73 (53%), Positives = 52/73 (71%)

Query: 8   RSFLCGGSTGVFIYAYCLYYYYARSDMSGFMQTSFFFGYMACVCYGFFLMLGTVGFRASL 67
           RS L  GSTG+FI+ Y ++YY  RS+MSG +QT  FFGY     Y FFLMLGT+ F +SL
Sbjct: 517 RSVLSVGSTGLFIFLYSVFYYARRSNMSGAVQTVEFFGYSLLTGYVFFLMLGTISFFSSL 576

Query: 68  LFVRHIYKSIKCE 80
            F+R+IY ++K +
Sbjct: 577 KFIRYIYVNLKMD 589

Plays an essential role in autophagy.

Rattus norvegicus (taxid: 10116)

>sp|Q54ZW0|PHG1B_DICDI Putative phagocytic receptor 1b OS=Dictyostelium discoideum GN=phg1b PE=2 SV=1

 Score = 63.9 bits (154), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 40/73 (54%), Positives = 55/73 (75%)

Query: 8   RSFLCGGSTGVFIYAYCLYYYYARSDMSGFMQTSFFFGYMACVCYGFFLMLGTVGFRASL 67
            SF+ GGST VFIY Y +YYYY  S M G +Q +F+F YM  VC+ FF++LGTVGF +SL
Sbjct: 515 NSFINGGSTVVFIYMYSIYYYYYISHMYGLLQATFYFTYMLIVCFFFFILLGTVGFYSSL 574

Query: 68  LFVRHIYKSIKCE 80
           +FV+ IY+++K +
Sbjct: 575 IFVKRIYRNLKSD 587

Involved in adhesion and phagocytosis of hydrophilic particles.

Dictyostelium discoideum (taxid: 44689)

>sp|Q5RDY2|TM9S4_PONAB Transmembrane 9 superfamily member 4 OS=Pongo abelii GN=TM9SF4 PE=2 SV=1

 Score = 59.7 bits (143), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 25/73 (34%), Positives = 46/73 (63%)

Query: 8   RSFLCGGSTGVFIYAYCLYYYYARSDMSGFMQTSFFFGYMACVCYGFFLMLGTVGFRASL 67
           R+FL  G +  ++  Y ++Y+  + D+  F+ +  +FGY A +   F+L+ GT+GF A+ 
Sbjct: 570 RNFLVSGGSAFYVLVYAIFYFVNKLDIVEFIPSLLYFGYTALMVLSFWLLTGTIGFYAAY 629

Query: 68  LFVRHIYKSIKCE 80
           +FVR IY ++K +
Sbjct: 630 MFVRKIYAAVKID 642

Pongo abelii (taxid: 9601)

>sp|Q92544|TM9S4_HUMAN Transmembrane 9 superfamily member 4 OS=Homo sapiens GN=TM9SF4 PE=1 SV=2

 Score = 59.7 bits (143), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 25/73 (34%), Positives = 46/73 (63%)

Query: 8   RSFLCGGSTGVFIYAYCLYYYYARSDMSGFMQTSFFFGYMACVCYGFFLMLGTVGFRASL 67
           R+FL  G +  ++  Y ++Y+  + D+  F+ +  +FGY A +   F+L+ GT+GF A+ 
Sbjct: 570 RNFLVSGGSAFYVLVYAIFYFVNKLDIVEFIPSLLYFGYTALMVLSFWLLTGTIGFYAAY 629

Query: 68  LFVRHIYKSIKCE 80
           +FVR IY ++K +
Sbjct: 630 MFVRKIYAAVKID 642

Homo sapiens (taxid: 9606)

>sp|A5D7E2|TM9S4_BOVIN Transmembrane 9 superfamily member 4 OS=Bos taurus GN=TM9SF4 PE=2 SV=2

 Score = 59.7 bits (143), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 25/73 (34%), Positives = 46/73 (63%)

Query: 8   RSFLCGGSTGVFIYAYCLYYYYARSDMSGFMQTSFFFGYMACVCYGFFLMLGTVGFRASL 67
           R+FL  G +  ++  Y ++Y+  + D+  F+ +  +FGY A +   F+L+ GT+GF A+ 
Sbjct: 570 RNFLVSGGSAFYVLVYAIFYFVNKLDIVEFIPSLLYFGYTALMVLSFWLLTGTIGFYAAY 629

Query: 68  LFVRHIYKSIKCE 80
           +FVR IY ++K +
Sbjct: 630 MFVRKIYAAVKID 642

Bos taurus (taxid: 9913)

>sp|Q4KLL4|TM9S4_RAT Transmembrane 9 superfamily member 4 OS=Rattus norvegicus GN=Tm9sf4 PE=2 SV=1

 Score = 57.8 bits (138), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 24/73 (32%), Positives = 45/73 (61%)

Query: 8   RSFLCGGSTGVFIYAYCLYYYYARSDMSGFMQTSFFFGYMACVCYGFFLMLGTVGFRASL 67
           R+FL  G +  ++  Y ++Y+  + D+  F+ +  +FGY   +   F+L+ GT+GF A+ 
Sbjct: 571 RNFLVSGGSAFYVLVYAIFYFVNKLDIVEFIPSLLYFGYTTLMVLSFWLLTGTIGFYAAY 630

Query: 68  LFVRHIYKSIKCE 80
           +FVR IY ++K +
Sbjct: 631 MFVRKIYAAVKID 643

Rattus norvegicus (taxid: 10116)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	80
255561779	592	transporter, putative [Ricinus communis]	0.912	0.123	0.931	5e-33
224079716	592	predicted protein [Populus trichocarpa]	0.912	0.123	0.904	4e-32
116788498	585	unknown [Picea sitchensis]	0.912	0.124	0.890	1e-31
357144892	588	PREDICTED: putative phagocytic receptor	0.912	0.124	0.890	1e-31
28564634	589	putative syntaxin SYP111 [Oryza sativa J	0.912	0.123	0.890	1e-31
326534326	590	predicted protein [Hordeum vulgare subsp	0.912	0.123	0.890	1e-31
218200514	592	hypothetical protein OsI_27915 [Oryza sa	0.912	0.123	0.890	2e-31
148906084	585	unknown [Picea sitchensis]	0.912	0.124	0.876	2e-31
224145792	242	predicted protein [Populus trichocarpa]	0.912	0.301	0.904	2e-31
226529065	589	transmembrane 9 superfamily protein memb	0.912	0.123	0.876	5e-31

>gi|255561779|ref|XP_002521899.1| transporter, putative [Ricinus communis] gi|223538937|gb|EEF40535.1| transporter, putative [Ricinus communis]

 Score =  144 bits (364), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 68/73 (93%), Positives = 72/73 (98%)

Query: 8   RSFLCGGSTGVFIYAYCLYYYYARSDMSGFMQTSFFFGYMACVCYGFFLMLGTVGFRASL 67
           RSFLCGGSTG+FIYAYCLYYY+ARS+MSGFMQTSFFFGYMAC+CYGFFLMLGTVGFRASL
Sbjct: 520 RSFLCGGSTGLFIYAYCLYYYHARSEMSGFMQTSFFFGYMACICYGFFLMLGTVGFRASL 579

Query: 68  LFVRHIYKSIKCE 80
            FVRHIYKSIKCE
Sbjct: 580 FFVRHIYKSIKCE 592

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224079716|ref|XP_002305925.1| predicted protein [Populus trichocarpa] gi|222848889|gb|EEE86436.1| predicted protein [Populus trichocarpa]

 Score =  141 bits (356), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 66/73 (90%), Positives = 70/73 (95%)

Query: 8   RSFLCGGSTGVFIYAYCLYYYYARSDMSGFMQTSFFFGYMACVCYGFFLMLGTVGFRASL 67
           RSFLCGGSTG+FIY YCLYYY+ARSDMSGFMQTSFFFGYMACVCYGFFLMLG++GFRASL
Sbjct: 520 RSFLCGGSTGLFIYGYCLYYYFARSDMSGFMQTSFFFGYMACVCYGFFLMLGSIGFRASL 579

Query: 68  LFVRHIYKSIKCE 80
            FVRHIY SIKCE
Sbjct: 580 FFVRHIYHSIKCE 592

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|116788498|gb|ABK24901.1| unknown [Picea sitchensis]

 Score =  140 bits (353), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 65/73 (89%), Positives = 70/73 (95%)

Query: 8   RSFLCGGSTGVFIYAYCLYYYYARSDMSGFMQTSFFFGYMACVCYGFFLMLGTVGFRASL 67
           RS LCGGSTGVFI+ YCLYYY+ARSDM+GFMQTSFFFGYM C+CYGFFLMLGTVGFRASL
Sbjct: 513 RSVLCGGSTGVFIFGYCLYYYFARSDMNGFMQTSFFFGYMTCICYGFFLMLGTVGFRASL 572

Query: 68  LFVRHIYKSIKCE 80
           LFVRHIY+SIKCE
Sbjct: 573 LFVRHIYRSIKCE 585

Source: Picea sitchensis

Species: Picea sitchensis

Genus: Picea

Family: Pinaceae

Order: Coniferales

Class: Coniferopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357144892|ref|XP_003573450.1| PREDICTED: putative phagocytic receptor 1b-like [Brachypodium distachyon]

 Score =  140 bits (353), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 65/73 (89%), Positives = 70/73 (95%)

Query: 8   RSFLCGGSTGVFIYAYCLYYYYARSDMSGFMQTSFFFGYMACVCYGFFLMLGTVGFRASL 67
           RS LCGGSTG+FI+ YC+YYY+ARSDMSGFMQTSFFFGYM CVCYGFFLMLGTVGFRASL
Sbjct: 516 RSVLCGGSTGIFIFFYCIYYYHARSDMSGFMQTSFFFGYMTCVCYGFFLMLGTVGFRASL 575

Query: 68  LFVRHIYKSIKCE 80
           LFVRHIY+SIKCE
Sbjct: 576 LFVRHIYRSIKCE 588

Source: Brachypodium distachyon

Species: Brachypodium distachyon

Genus: Brachypodium

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|28564634|dbj|BAC57816.1| putative syntaxin SYP111 [Oryza sativa Japonica Group]

 Score =  140 bits (352), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 65/73 (89%), Positives = 70/73 (95%)

Query: 8   RSFLCGGSTGVFIYAYCLYYYYARSDMSGFMQTSFFFGYMACVCYGFFLMLGTVGFRASL 67
           RS LCGGSTG+FI+ YC+YYY+ARSDMSGFMQTSFFFGYM CVCYGFFLMLGTVGFRASL
Sbjct: 517 RSVLCGGSTGIFIFFYCIYYYHARSDMSGFMQTSFFFGYMTCVCYGFFLMLGTVGFRASL 576

Query: 68  LFVRHIYKSIKCE 80
           LFVRHIY+SIKCE
Sbjct: 577 LFVRHIYRSIKCE 589

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|326534326|dbj|BAJ89513.1| predicted protein [Hordeum vulgare subsp. vulgare]

 Score =  140 bits (352), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 65/73 (89%), Positives = 70/73 (95%)

Query: 8   RSFLCGGSTGVFIYAYCLYYYYARSDMSGFMQTSFFFGYMACVCYGFFLMLGTVGFRASL 67
           RS LCGGSTG+FI+ YC+YYY+ARSDMSGFMQTSFFFGYM CVCYGFFLMLGTVGFRASL
Sbjct: 518 RSVLCGGSTGIFIFFYCIYYYHARSDMSGFMQTSFFFGYMTCVCYGFFLMLGTVGFRASL 577

Query: 68  LFVRHIYKSIKCE 80
           LFVRHIY+SIKCE
Sbjct: 578 LFVRHIYRSIKCE 590

Source: Hordeum vulgare subsp. vulgare

Species: Hordeum vulgare

Genus: Hordeum

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|218200514|gb|EEC82941.1| hypothetical protein OsI_27915 [Oryza sativa Indica Group]

 Score =  139 bits (351), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 65/73 (89%), Positives = 70/73 (95%)

Query: 8   RSFLCGGSTGVFIYAYCLYYYYARSDMSGFMQTSFFFGYMACVCYGFFLMLGTVGFRASL 67
           RS LCGGSTG+FI+ YC+YYY+ARSDMSGFMQTSFFFGYM CVCYGFFLMLGTVGFRASL
Sbjct: 520 RSVLCGGSTGIFIFFYCIYYYHARSDMSGFMQTSFFFGYMTCVCYGFFLMLGTVGFRASL 579

Query: 68  LFVRHIYKSIKCE 80
           LFVRHIY+SIKCE
Sbjct: 580 LFVRHIYRSIKCE 592

Source: Oryza sativa Indica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|148906084|gb|ABR16201.1| unknown [Picea sitchensis]

 Score =  139 bits (351), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 64/73 (87%), Positives = 70/73 (95%)

Query: 8   RSFLCGGSTGVFIYAYCLYYYYARSDMSGFMQTSFFFGYMACVCYGFFLMLGTVGFRASL 67
           RS LCGGSTGVFI+ YC+YYY+ARSDM+GFMQTSFFFGYM C+CYGFFLMLGTVGFRASL
Sbjct: 513 RSVLCGGSTGVFIFGYCVYYYFARSDMTGFMQTSFFFGYMTCICYGFFLMLGTVGFRASL 572

Query: 68  LFVRHIYKSIKCE 80
           LFVRHIY+SIKCE
Sbjct: 573 LFVRHIYRSIKCE 585

Source: Picea sitchensis

Species: Picea sitchensis

Genus: Picea

Family: Pinaceae

Order: Coniferales

Class: Coniferopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224145792|ref|XP_002336262.1| predicted protein [Populus trichocarpa] gi|222833084|gb|EEE71561.1| predicted protein [Populus trichocarpa]

 Score =  139 bits (350), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 66/73 (90%), Positives = 70/73 (95%)

Query: 8   RSFLCGGSTGVFIYAYCLYYYYARSDMSGFMQTSFFFGYMACVCYGFFLMLGTVGFRASL 67
           RSFLCGGSTG+FIY YCLYYY+ARSDMSGFMQTSFFFGYMACVCYGFFLMLG++GFRASL
Sbjct: 170 RSFLCGGSTGLFIYGYCLYYYFARSDMSGFMQTSFFFGYMACVCYGFFLMLGSIGFRASL 229

Query: 68  LFVRHIYKSIKCE 80
            FVRHIY SIKCE
Sbjct: 230 FFVRHIYHSIKCE 242

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|226529065|ref|NP_001148367.1| transmembrane 9 superfamily protein member 1 precursor [Zea mays] gi|195618600|gb|ACG31130.1| transmembrane 9 superfamily protein member 1 precursor [Zea mays] gi|223950043|gb|ACN29105.1| unknown [Zea mays] gi|413917314|gb|AFW57246.1| putative Transmembrane 9 family protein member 1 [Zea mays]

 Score =  138 bits (347), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 64/73 (87%), Positives = 69/73 (94%)

Query: 8   RSFLCGGSTGVFIYAYCLYYYYARSDMSGFMQTSFFFGYMACVCYGFFLMLGTVGFRASL 67
           RS LCGGSTG+FI+ YC+YYY+ARSDMSGFMQTSFFFGYM CVCYGFFLMLGTVGFRASL
Sbjct: 517 RSVLCGGSTGIFIFFYCIYYYHARSDMSGFMQTSFFFGYMTCVCYGFFLMLGTVGFRASL 576

Query: 68  LFVRHIYKSIKCE 80
            FVRHIY+SIKCE
Sbjct: 577 FFVRHIYRSIKCE 589

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	80
TAIR|locus:2006872	592	AT1G14670 "AT1G14670" [Arabido	0.912	0.123	0.808	5.5e-28
TAIR|locus:2041160	592	AT2G01970 "AT2G01970" [Arabido	0.912	0.123	0.808	5.5e-28
TAIR|locus:2169100	593	AT5G37310 [Arabidopsis thalian	0.912	0.123	0.780	1.1e-26
TAIR|locus:2201806	589	AT1G08350 [Arabidopsis thalian	0.9	0.122	0.547	2.3e-16
UNIPROTKB|H3BMG7	143	H3BMG7 "Uncharacterized protei	0.912	0.510	0.493	1.5e-12
DICTYBASE|DDB_G0277273	587	phg1B "TM9 protein B" [Dictyos	0.9	0.122	0.472	2.2e-12
ZFIN|ZDB-GENE-040801-64	609	tm9sf1 "transmembrane 9 superf	0.912	0.119	0.493	8.1e-12
TAIR|locus:2197364	589	TMN1 "transmembrane nine 1" [A	0.987	0.134	0.405	1.3e-11
UNIPROTKB|G3V1B9	519	TM9SF1 "Transmembrane 9 superf	0.912	0.140	0.493	1.3e-11
UNIPROTKB|E9PMQ9	589	TM9SF1 "Transmembrane 9 superf	0.912	0.123	0.493	1.6e-11

TAIR|locus:2006872 AT1G14670 "AT1G14670" [Arabidopsis thaliana (taxid:3702)]

 Score = 319 (117.4 bits), Expect = 5.5e-28, P = 5.5e-28
 Identities = 59/73 (80%), Positives = 63/73 (86%)

Query:     8 RSFLCGGSTGVFIXXXXXXXXXXRSDMSGFMQTSFFFGYMACVCYGFFLMLGTVGFRASL 67
             RSFLCGGSTG+FI          RSDMSGFMQTSFFFGYMAC+CYGFFLMLGTVGFRA+L
Sbjct:   520 RSFLCGGSTGLFIYAYCLYYYYARSDMSGFMQTSFFFGYMACICYGFFLMLGTVGFRAAL 579

Query:    68 LFVRHIYKSIKCE 80
             LFVRHIY+SIKCE
Sbjct:   580 LFVRHIYRSIKCE 592

GO:0006810 "transport" evidence=ISS

GO:0016021 "integral to membrane" evidence=IEA;ISS

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0016020 "membrane" evidence=IDA

GO:0005768 "endosome" evidence=IDA

GO:0005802 "trans-Golgi network" evidence=IDA

TAIR|locus:2041160 AT2G01970 "AT2G01970" [Arabidopsis thaliana (taxid:3702)]

 Score = 319 (117.4 bits), Expect = 5.5e-28, P = 5.5e-28
 Identities = 59/73 (80%), Positives = 63/73 (86%)

Query:     8 RSFLCGGSTGVFIXXXXXXXXXXRSDMSGFMQTSFFFGYMACVCYGFFLMLGTVGFRASL 67
             RSFLCGGSTG+FI          RSDMSGFMQTSFFFGYMAC+CYGFFLMLGTVGFRA+L
Sbjct:   520 RSFLCGGSTGLFIYAYCLYYYYARSDMSGFMQTSFFFGYMACICYGFFLMLGTVGFRAAL 579

Query:    68 LFVRHIYKSIKCE 80
             LFVRHIY+SIKCE
Sbjct:   580 LFVRHIYRSIKCE 592

GO:0006810 "transport" evidence=ISS

GO:0016021 "integral to membrane" evidence=IEA;ISS

GO:0009505 "plant-type cell wall" evidence=IDA

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0005774 "vacuolar membrane" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

GO:0005768 "endosome" evidence=IDA

GO:0005802 "trans-Golgi network" evidence=IDA

TAIR|locus:2169100 AT5G37310 [Arabidopsis thaliana (taxid:3702)]

 Score = 307 (113.1 bits), Expect = 1.1e-26, P = 1.1e-26
 Identities = 57/73 (78%), Positives = 61/73 (83%)

Query:     8 RSFLCGGSTGVFIXXXXXXXXXXRSDMSGFMQTSFFFGYMACVCYGFFLMLGTVGFRASL 67
             RS LCGGSTG+FI          RSDMSGFMQTSFFFGYMAC+CYGFFLMLGT+GF ASL
Sbjct:   521 RSLLCGGSTGLFIYAYCLYYYYARSDMSGFMQTSFFFGYMACICYGFFLMLGTIGFCASL 580

Query:    68 LFVRHIYKSIKCE 80
             LFVRHIY+SIKCE
Sbjct:   581 LFVRHIYRSIKCE 593

GO:0005576 "extracellular region" evidence=ISM

GO:0016021 "integral to membrane" evidence=IEA;ISS

GO:0009505 "plant-type cell wall" evidence=IDA

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0005768 "endosome" evidence=IDA

GO:0005802 "trans-Golgi network" evidence=IDA

TAIR|locus:2201806 AT1G08350 [Arabidopsis thaliana (taxid:3702)]

 Score = 212 (79.7 bits), Expect = 2.3e-16, P = 2.3e-16
 Identities = 40/73 (54%), Positives = 51/73 (69%)

Query:     8 RSFLCGGSTGVFIXXXXXXXXXXRSDMSGFMQTSFFFGYMACVCYGFFLMLGTVGFRASL 67
             RS LCGG T VF+          RSDM+GF+Q SF+ GY A +CY  FL+LGT+ F ASL
Sbjct:   518 RSILCGGFTAVFMYGYGVLFYL-RSDMTGFLQLSFYLGYTALLCYALFLVLGTISFLASL 576

Query:    68 LFVRHIYKSIKCE 80
             +F+RHIY+S+K E
Sbjct:   577 MFIRHIYRSVKLE 589

GO:0005739 "mitochondrion" evidence=ISM

GO:0016021 "integral to membrane" evidence=IEA;ISS

GO:0009524 "phragmoplast" evidence=TAS

GO:0005484 "SNAP receptor activity" evidence=IPI

GO:0006944 "cellular membrane fusion" evidence=IMP

UNIPROTKB|H3BMG7 H3BMG7 "Uncharacterized protein" [Homo sapiens (taxid:9606)]

 Score = 167 (63.8 bits), Expect = 1.5e-12, P = 1.5e-12
 Identities = 36/73 (49%), Positives = 46/73 (63%)

Query:     8 RSFLCGGSTGVFIXXXXXXXXXXRSDMSGFMQTSFFFGYMACVCYGFFLMLGTVGFRASL 67
             RS L  GSTG+FI          RS+MSG +QT  FFGY     Y FFLMLGT+ F +SL
Sbjct:    71 RSVLSVGSTGLFIFLYSVFYYARRSNMSGAVQTVEFFGYSLLTGYVFFLMLGTISFFSSL 130

Query:    68 LFVRHIYKSIKCE 80
              F+R+IY ++K +
Sbjct:   131 KFIRYIYVNLKMD 143

GO:0016021 "integral to membrane" evidence=IEA

DICTYBASE|DDB_G0277273 phg1B "TM9 protein B" [Dictyostelium discoideum (taxid:44689)]

 Score = 175 (66.7 bits), Expect = 2.2e-12, P = 2.2e-12
 Identities = 34/72 (47%), Positives = 48/72 (66%)

Query:     9 SFLCGGSTGVFIXXXXXXXXXXRSDMSGFMQTSFFFGYMACVCYGFFLMLGTVGFRASLL 68
             SF+ GGST VFI           S M G +Q +F+F YM  VC+ FF++LGTVGF +SL+
Sbjct:   516 SFINGGSTVVFIYMYSIYYYYYISHMYGLLQATFYFTYMLIVCFFFFILLGTVGFYSSLI 575

Query:    69 FVRHIYKSIKCE 80
             FV+ IY+++K +
Sbjct:   576 FVKRIYRNLKSD 587

GO:0033299 "secretion of lysosomal enzymes" evidence=IMP

GO:0031589 "cell-substrate adhesion" evidence=IGI

GO:0030587 "sorocarp development" evidence=IMP

GO:0008283 "cell proliferation" evidence=IMP

GO:0006909 "phagocytosis" evidence=IMP

GO:0005887 "integral to plasma membrane" evidence=TAS

GO:0004888 "transmembrane signaling receptor activity" evidence=TAS

GO:0016021 "integral to membrane" evidence=IEA

GO:0016020 "membrane" evidence=IEA

ZFIN|ZDB-GENE-040801-64 tm9sf1 "transmembrane 9 superfamily member 1" [Danio rerio (taxid:7955)]

 Score = 170 (64.9 bits), Expect = 8.1e-12, P = 8.1e-12
 Identities = 36/73 (49%), Positives = 46/73 (63%)

Query:     8 RSFLCGGSTGVFIXXXXXXXXXXRSDMSGFMQTSFFFGYMACVCYGFFLMLGTVGFRASL 67
             RS L  GSTG+FI          RS+MSG +Q+  FFGY     + F LMLGTV F ASL
Sbjct:   537 RSVLSTGSTGIFIFVYSLFYYHNRSNMSGLVQSVEFFGYSLLTAFVFSLMLGTVSFWASL 596

Query:    68 LFVRHIYKSIKCE 80
              F+R+IY+S+K +
Sbjct:   597 AFIRYIYRSLKMD 609

GO:0016021 "integral to membrane" evidence=IEA

TAIR|locus:2197364 TMN1 "transmembrane nine 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 168 (64.2 bits), Expect = 1.3e-11, P = 1.3e-11
 Identities = 32/79 (40%), Positives = 45/79 (56%)

Query:     2 NWFERMRSFLCGGSTGVFIXXXXXXXXXXRSDMSGFMQTSFFFGYMACVCYGFFLMLGTV 61
             N+  +  SF    ST V++          ++ MSGF QTSF+FGY    C G  ++ G V
Sbjct:   511 NYHWQWTSFFSAASTAVYVYLYSIYYYYVKTKMSGFFQTSFYFGYTMMFCLGLGILCGAV 570

Query:    62 GFRASLLFVRHIYKSIKCE 80
             G+  S LFVR IY++IKC+
Sbjct:   571 GYLGSNLFVRRIYRNIKCD 589

GO:0005576 "extracellular region" evidence=ISM

GO:0016021 "integral to membrane" evidence=ISS

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0016020 "membrane" evidence=IDA

GO:0005797 "Golgi medial cisterna" evidence=IDA

GO:0005801 "cis-Golgi network" evidence=IDA

GO:0005768 "endosome" evidence=IDA

GO:0005802 "trans-Golgi network" evidence=IDA

UNIPROTKB|G3V1B9 TM9SF1 "Transmembrane 9 superfamily member 1" [Homo sapiens (taxid:9606)]

 Score = 167 (63.8 bits), Expect = 1.3e-11, P = 1.3e-11
 Identities = 36/73 (49%), Positives = 46/73 (63%)

Query:     8 RSFLCGGSTGVFIXXXXXXXXXXRSDMSGFMQTSFFFGYMACVCYGFFLMLGTVGFRASL 67
             RS L  GSTG+FI          RS+MSG +QT  FFGY     Y FFLMLGT+ F +SL
Sbjct:   447 RSVLSVGSTGLFIFLYSVFYYARRSNMSGAVQTVEFFGYSLLTGYVFFLMLGTISFFSSL 506

Query:    68 LFVRHIYKSIKCE 80
              F+R+IY ++K +
Sbjct:   507 KFIRYIYVNLKMD 519

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|E9PMQ9 TM9SF1 "Transmembrane 9 superfamily member 1" [Homo sapiens (taxid:9606)]

 Score = 167 (63.8 bits), Expect = 1.6e-11, P = 1.6e-11
 Identities = 36/73 (49%), Positives = 46/73 (63%)

Query:     8 RSFLCGGSTGVFIXXXXXXXXXXRSDMSGFMQTSFFFGYMACVCYGFFLMLGTVGFRASL 67
             RS L  GSTG+FI          RS+MSG +QT  FFGY     Y FFLMLGT+ F +SL
Sbjct:   517 RSVLSVGSTGLFIFLYSVFYYARRSNMSGAVQTVEFFGYSLLTGYVFFLMLGTISFFSSL 576

Query:    68 LFVRHIYKSIKCE 80
              F+R+IY ++K +
Sbjct:   577 KFIRYIYVNLKMD 589

GO:0016021 "integral to membrane" evidence=IEA

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Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: grail3.0038018602 hypothetical protein (592 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	80
pfam02990	518	pfam02990, EMP70, Endomembrane protein 70	2e-08

>gnl|CDD|217309 pfam02990, EMP70, Endomembrane protein 70

 Score = 48.8 bits (117), Expect = 2e-08
 Identities = 14/37 (37%), Positives = 25/37 (67%)

Query: 2   NWFERMRSFLCGGSTGVFIYAYCLYYYYARSDMSGFM 38
           ++    RSFL  GST V+++ Y +YY++ +  +SGF+
Sbjct: 482 DYRWWWRSFLTSGSTAVYVFLYSIYYFFTKLKISGFV 518

Length = 518

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	80
KOG1278	628	consensus Endosomal membrane proteins, EMP70 [Intr	100.0
KOG1277	593	consensus Endosomal membrane proteins, EMP70 [Intr	99.97
PF02990	521	EMP70: Endomembrane protein 70; InterPro: IPR00424	99.61

>KOG1278 consensus Endosomal membrane proteins, EMP70 [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=4.1e-35  Score=231.29  Aligned_cols=80  Identities=38%  Similarity=0.855  Sum_probs=79.6

Q ss_pred             CCcccceeeeccCchhHHHHHHHHHHHhhhcccccCchhhHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHhhcccCC
Q 034896            1 MNWFERMRSFLCGGSTGVFIYAYCLYYYYARSDMSGFMQTSFFFGYMACVCYGFFLMLGTVGFRASLLFVRHIYKSIKCE   80 (80)
Q Consensus         1 eny~WwWrSF~~~gs~~~y~f~Ysi~y~~~~~~~~g~~~~~lyfgY~~l~s~~~~l~~G~iGfl~s~~Fv~~IY~~iK~d   80 (80)
                      ||||||||||++||++|+|+|+||++|+++|++++|+++++||+|||++++++++++||||||++|+|||||||+++|+|
T Consensus       549 Edy~WwWRsF~~sG~~avY~fiYsi~Y~~~kL~i~g~~s~~LYfgYsli~~~~~~l~tGtIGF~a~~~Fv~kIYssvKiD  628 (628)
T KOG1278|consen  549 EDYNWWWRSFLTSGSSAVYVFIYSIFYFFTKLEISGFVSAVLYFGYSLIISLLFFLLTGTIGFLAAFWFVRKIYSSVKID  628 (628)
T ss_pred             cccceeeeeeeccCcchhhHHHHHHhhhheeeeecccchhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhheecC
Confidence            89999999999999999999999999999999999999999999999999999999999999999999999999999998

>KOG1277 consensus Endosomal membrane proteins, EMP70 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.97  E-value=3.9e-32  Score=211.79  Aligned_cols=80  Identities=48%  Similarity=0.981  Sum_probs=79.6

Q ss_pred             CCcccceeeeccCchhHHHHHHHHHHHhhhcccccCchhhHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHhhcccCC
Q 034896            1 MNWFERMRSFLCGGSTGVFIYAYCLYYYYARSDMSGFMQTSFFFGYMACVCYGFFLMLGTVGFRASLLFVRHIYKSIKCE   80 (80)
Q Consensus         1 eny~WwWrSF~~~gs~~~y~f~Ysi~y~~~~~~~~g~~~~~lyfgY~~l~s~~~~l~~G~iGfl~s~~Fv~~IY~~iK~d   80 (80)
                      ||||||||||+++||+|+|+++||+||++.|++|.|+.|+..|||||+++|.++++|||+||+.++..||||||+|+|+|
T Consensus       514 EDyrW~WtSfls~~ST~~yvy~Ys~yYy~~ktkMsG~fQTsfyFGYm~~f~~~lgim~Gtigy~gt~~FVR~IY~nvK~d  593 (593)
T KOG1277|consen  514 EDYRWWWTSFLSAGSTALYVYLYSFYYYFFKTKMSGLFQTSFYFGYMAVFCYALGLMCGTIGYVGTLLFVRKIYRNVKID  593 (593)
T ss_pred             ccceeeeeeeeccccceeehhhhHHHHHhhhccccchhhhhhhhHHHHHHHHHHHHHHhhHhhhHHHHHHHHHHhhccCC
Confidence            89999999999999999999999999999999999999999999999999999999999999999999999999999998

>PF02990 EMP70: Endomembrane protein 70; InterPro: IPR004240 The transmembrane 9 superfamily protein (TM9SF) may function as a channel or small molecule transporter

Probab=99.61  E-value=2.3e-16  Score=123.47  Aligned_cols=38  Identities=42%  Similarity=0.990  Sum_probs=37.0

Q ss_pred             CCcccceeeeccCchhHHHHHHHHHHHhhhcccccCch
Q 034896            1 MNWFERMRSFLCGGSTGVFIYAYCLYYYYARSDMSGFM   38 (80)
Q Consensus         1 eny~WwWrSF~~~gs~~~y~f~Ysi~y~~~~~~~~g~~   38 (80)
                      ||||||||||++|||+|+|+|+||++|+++|++|+|++
T Consensus       484 Edy~WwWrSF~~~~s~~~y~f~Ysi~y~~~~~~~~g~~  521 (521)
T PF02990_consen  484 EDYRWWWRSFLTGGSSGIYVFLYSIYYYFTKLSMSGFV  521 (521)
T ss_pred             cccceeeeeehhCcHHHHHHHHHHHHhhheeEEeeecC
Confidence            89999999999999999999999999999999999984

Proteins in this group are endosomal integral membrane proteins.; GO: 0016021 integral to membrane

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00