Citrus Sinensis ID: 034898

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------8
Protein Sequence
MCISNYILSAFKIFVAKMGNADRKSFVWKKVKCPQQTTNVECGYYVIRFMKEIIESQDDSIKKCVCWTRQLHTKRILMK
Secondary Structure (PSIPRED)
ccHHHHHHHHHEEcHHcccccccccccEEEEEcccccccEEcHHHHHHHHHHHHHcccccHHHHHHHcccccccccccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHHHccccHcccccccccEEEEEEcccccccccHHHHHHHHHHHHHHcccccccEEEEEEHHHHHHHHHcc
Coil and Loop (DISEMBL)
MCISNYILSAFKIFVAKmgnadrksfvwkkvkcpqqttnveCGYYVIRFMKEIIESQDDSIKKCVCWTRQLHTKRILMK
Flexible Loop (DISEMBL)
MCISNYILSAFKIFVAKMGNADRKSFvwkkvkcpqqttnvecGYYVIRFMKEIIEsqddsikkcvcwtrqlhtkrilmk
Low Complexity Region (SEG)
MCISNYILSAFKIFVAKMGNADRKSFVWKKVKCPQQTTNVECGYYVIRFMKEIIESQDDSIKKCVCWTRQLHTKRILMK
Disordered region (IsUnstruct)
*CISNYILSAFKIFVAKMGNADRKSFVWKKVKCPQQTTNVECGYYVIRFMKEIIESQDDSIKKCVCWTRQLHTKRI***
Disordered Region (DISOPRED)
*CISNYILSAFK*****************KVKCPQQTTNVECGYYVIRFMKEIIESQDDSIKKCVCWTRQLHTKRILM*
Disordered Region (DISEMBL)
MCISNYILSAFKIFVAKMGNADRKSFVWKKVKCPQQTTNVECGYYVIRFMKEIIESQDDSIKKCVCWTRQLHTKRILMK
Disordered Region (DISPRO)
MCISNYILSAFKIFVAKMGNADRKSFVWKKVKCPQQTTNVECGYYVIRFMKEIIESQDDSIKKCVCWTRQLHTKRILMK
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MCISNYILSAFKIFVAKMGNADRKSFVWKKVKCPQQTTNVECGYYVIRFMKEIIESQDDSIKKCVCWTRQLHTKRILMK
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	79
357439203	420	Ubiquitin-like-specific protease [Medica	0.455	0.085	0.555	9e-05
449470994	221	PREDICTED: uncharacterized protein LOC10	0.430	0.153	0.617	0.0001
357458641	137	hypothetical protein MTR_3g036000 [Medic	0.455	0.262	0.527	0.0002
357448609	129	hypothetical protein MTR_2g030940 [Medic	0.455	0.279	0.527	0.0002
388521401	99	unknown [Medicago truncatula]	0.455	0.363	0.527	0.0003
357501331	221	hypothetical protein MTR_7g005160 [Medic	0.632	0.226	0.4	0.0003
147766136	1397	hypothetical protein VITISV_034073 [Viti	0.569	0.032	0.444	0.0003
147862302	1783	hypothetical protein VITISV_003642 [Viti	0.569	0.025	0.444	0.0004
147767597	736	hypothetical protein VITISV_027850 [Viti	0.620	0.066	0.428	0.0004
359485905	688	PREDICTED: uncharacterized protein LOC10	0.569	0.065	0.444	0.0004

>gi|357439203|ref|XP_003589878.1| Ubiquitin-like-specific protease [Medicago truncatula] gi|355478926|gb|AES60129.1| Ubiquitin-like-specific protease [Medicago truncatula]

 Score = 50.8 bits (120), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 20/36 (55%), Positives = 27/36 (75%)

Query: 28  WKKVKCPQQTTNVECGYYVIRFMKEIIESQDDSIKK 63
           W ++KCP QT  ++CGY+V+RFMKEII +  D I K
Sbjct: 344 WIEIKCPMQTNGIDCGYFVMRFMKEIILANQDMIPK 379

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449470994|ref|XP_004153177.1| PREDICTED: uncharacterized protein LOC101215249 [Cucumis sativus]

 Score = 50.4 bits (119), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 21/34 (61%), Positives = 27/34 (79%)

Query: 28  WKKVKCPQQTTNVECGYYVIRFMKEIIESQDDSI 61
           WK VKCP+Q   VECGYYV+RFM++II ++  SI
Sbjct: 137 WKVVKCPKQNGVVECGYYVMRFMRDIISARSTSI 170

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357458641|ref|XP_003599601.1| hypothetical protein MTR_3g036000 [Medicago truncatula] gi|355488649|gb|AES69852.1| hypothetical protein MTR_3g036000 [Medicago truncatula]

 Score = 49.7 bits (117), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 19/36 (52%), Positives = 27/36 (75%)

Query: 28 WKKVKCPQQTTNVECGYYVIRFMKEIIESQDDSIKK 63
          W K+KCP QT  ++CGY+V++FMKEII +  D I +
Sbjct: 61 WMKIKCPMQTNGIDCGYFVMQFMKEIILANQDMIPE 96

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357448609|ref|XP_003594580.1| hypothetical protein MTR_2g030940 [Medicago truncatula] gi|355483628|gb|AES64831.1| hypothetical protein MTR_2g030940 [Medicago truncatula]

 Score = 49.7 bits (117), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 19/36 (52%), Positives = 27/36 (75%)

Query: 28 WKKVKCPQQTTNVECGYYVIRFMKEIIESQDDSIKK 63
          W K+KCP QT  ++CGY+V++FMKEII +  D I +
Sbjct: 53 WMKIKCPMQTNGIDCGYFVMQFMKEIILANQDMIPE 88

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388521401|gb|AFK48762.1| unknown [Medicago truncatula]

 Score = 49.3 bits (116), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 19/36 (52%), Positives = 27/36 (75%)

Query: 28 WKKVKCPQQTTNVECGYYVIRFMKEIIESQDDSIKK 63
          W ++KCP QT  ++CGY+V+RFMKEII +  D I +
Sbjct: 23 WIEIKCPMQTNGIDCGYFVMRFMKEIILANQDMIPE 58

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357501331|ref|XP_003620954.1| hypothetical protein MTR_7g005160 [Medicago truncatula] gi|355495969|gb|AES77172.1| hypothetical protein MTR_7g005160 [Medicago truncatula]

 Score = 49.3 bits (116), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 20/50 (40%), Positives = 34/50 (68%)

Query: 16  AKMGNADRKSFVWKKVKCPQQTTNVECGYYVIRFMKEIIESQDDSIKKCV 65
           A++ N    +  W +V+CP+Q   ++CGY+V+RFMKEI+ S+ + I K +
Sbjct: 166 AQVSNNKFNNISWVRVQCPRQENGIDCGYFVMRFMKEILISKLNEIPKLI 215

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147766136|emb|CAN74637.1| hypothetical protein VITISV_034073 [Vitis vinifera]

 Score = 48.9 bits (115), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 20/45 (44%), Positives = 30/45 (66%)

Query: 10   AFKIFVAKMGNADRKSFVWKKVKCPQQTTNVECGYYVIRFMKEII 54
            A +I   +   + ++   W KV CP+Q  +VECGYYV+R+MK+II
Sbjct: 1290 ALRIHPPEKQRSSKREPTWVKVVCPRQLGSVECGYYVMRYMKDII 1334

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147862302|emb|CAN79325.1| hypothetical protein VITISV_003642 [Vitis vinifera]

 Score = 48.9 bits (115), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 20/45 (44%), Positives = 30/45 (66%)

Query: 10   AFKIFVAKMGNADRKSFVWKKVKCPQQTTNVECGYYVIRFMKEII 54
            A +I   +   + ++   W KV CP+Q  +VECGYYV+R+MK+II
Sbjct: 1604 ALRIHPPEKQRSSKREPTWVKVVCPRQLGSVECGYYVMRYMKDII 1648

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147767597|emb|CAN71251.1| hypothetical protein VITISV_027850 [Vitis vinifera]

 Score = 48.9 bits (115), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 21/49 (42%), Positives = 31/49 (63%)

Query: 10  AFKIFVAKMGNADRKSFVWKKVKCPQQTTNVECGYYVIRFMKEIIESQD 58
           A +I   +     ++   W KV CP+Q  +VECGYYV+R+MKEII + +
Sbjct: 641 AIRINPPEKQKTSKREPTWVKVVCPRQPGSVECGYYVMRYMKEIIANPN 689

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359485905|ref|XP_003633352.1| PREDICTED: uncharacterized protein LOC100250086 [Vitis vinifera]

 Score = 48.9 bits (115), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 20/45 (44%), Positives = 30/45 (66%)

Query: 10  AFKIFVAKMGNADRKSFVWKKVKCPQQTTNVECGYYVIRFMKEII 54
           A +I   +   + ++   W KV CP+Q  +VECGYYV+R+MK+II
Sbjct: 611 ALRIHPPEKQRSSKRKPTWVKVVCPRQLGSVECGYYVMRYMKDII 655

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

No hits with e-value below 0.001 by BLAST

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Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

No confident hit detected by STRING

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	79
PF02902	216	Peptidase_C48: Ulp1 protease family, C-terminal ca	98.66
PLN03189	490	Protease specific for SMALL UBIQUITIN-RELATED MODI	97.33
COG5160	578	ULP1 Protease, Ulp1 family [Posttranslational modi	96.53
KOG3246	223	consensus Sentrin-specific cysteine protease (Ulp1	96.2
KOG0778	511	consensus Protease, Ulp1 family [Posttranslational	92.07

>PF02902 Peptidase_C48: Ulp1 protease family, C-terminal catalytic domain This family belongs to family C48 of the peptidase classification

Probab=98.66  E-value=5.3e-08  Score=65.34  Aligned_cols=39  Identities=31%  Similarity=0.651  Sum_probs=32.4

Q ss_pred             CCCCceeEEe-cCCCCCCcccchhHHHHHHHHHHhcCccc
Q 034898           22 DRKSFVWKKV-KCPQQTTNVECGYYVIRFMKEIIESQDDS   60 (79)
Q Consensus        22 ~k~~~~Wi~~-kCprQ~gg~ECGYYVMr~M~~II~~~~~~   60 (79)
                      +...++++.+ .||+|+++++||+|||+||..++.+....
T Consensus       148 ~~~~~~~~~~~~~pqQ~n~~dCGv~vl~~~~~~~~~~~~~  187 (216)
T PF02902_consen  148 DKSPFKIVRPPNVPQQPNGYDCGVYVLKFMECLLEGPSFD  187 (216)
T ss_dssp             -TTTCEEEEECTS-SSSSSSCHHHHHHHHHHHHHCTHHST
T ss_pred             ccceeeecccccccCCCCCCCcHHHHHHHHHHHHhCCCCc
Confidence            3567778887 99999999999999999999998887665

; InterPro: IPR003653 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of proteins contain cysteine peptidases belonging to MEROPS peptidase family C48 (Ulp1 endopeptidase family, clan CE). The protein fold of the peptidase domain for members of this family resembles that of adenain, the type example for clan CE. This group of sequences also contains a number of hypothetical proteins, which have not yet been characterised, and non-peptidase homologues. These are proteins that have either been found experimentally to be without peptidase activity, or lack amino acid residues that are believed to be essential for the catalytic activity of the peptidases in the family. The Ulp1 endopeptidase family contain the deubiquitinating enzymes (DUB) that can de-conjugate ubiquitin or ubiquitin-like proteins from ubiquitin-conjugated proteins. They can be classified in 3 families according to sequence homology [, ]: Ubiquitin carboxyl-terminal hydrolase (UCH) (see PDOC00127 from PROSITEDOC), Ubiquitin-specific processing protease (UBP) (see PDOC00750 from PROSITEDOC), and ubiquitin-like protease (ULP) specific for de-conjugating ubiquitin-like proteins. In contrast to the UBP pathway, which is very redundant (16 UBP enzymes in yeast), there are few ubiquitin-like proteases (only one in yeast, Ulp1). Ulp1 catalyses two critical functions in the SUMO/Smt3 pathway via its cysteine protease activity. Ulp1 processes the Smt3 C-terminal sequence (-GGATY) to its mature form (-GG), and it de-conjugates Smt3 from the lysine epsilon-amino group of the target protein []. Crystal structure of yeast Ulp1 bound to Smt3 [] revealed that the catalytic and interaction interface is situated in a shallow and narrow cleft where conserved residues recognise the Gly-Gly motif at the C-terminal extremity of Smt3 protein. Ulp1 adopts a novel architecture despite some structural similarity with other cysteine protease. The secondary structure is composed of seven alpha helices and seven beta strands. The catalytic domain includes the central alpha helix, beta-strands 4 to 6, and the catalytic triad (Cys-His-Asp). This profile is directed against the C-terminal part of ULP proteins that displays full proteolytic activity [].; GO: 0008234 cysteine-type peptidase activity, 0006508 proteolysis; PDB: 1EUV_A 2HL8_A 2HKP_A 2HL9_A 1XT9_A 2BKQ_C 2BKR_A 2IO1_E 1TH0_B 1TGZ_A ....

>PLN03189 Protease specific for SMALL UBIQUITIN-RELATED MODIFIER (SUMO); Provisional

Probab=97.33  E-value=0.00018  Score=59.90  Aligned_cols=48  Identities=19%  Similarity=0.450  Sum_probs=34.3

Q ss_pred             HHHHhhHHHhhcCCCCC----CCceeE---EecCCCCCCcccchhHHHHHHHHHH
Q 034898            7 ILSAFKIFVAKMGNADR----KSFVWK---KVKCPQQTTNVECGYYVIRFMKEII   54 (79)
Q Consensus         7 i~salKi~v~~~~~~~k----~~~~Wi---~~kCprQ~gg~ECGYYVMr~M~~II   54 (79)
                      ++..|+.|...+...+.    ..-.|-   ...+|+|.||+|||.||+.||..+.
T Consensus       407 vL~~L~rYL~~E~kdK~g~d~D~s~W~~~~~~~vPQQ~NG~DCGVFVL~yAE~~S  461 (490)
T PLN03189        407 ILDALAKYYVDEVKDKSEKDIDVSSWEQEFVEDLPEQKNGYDCGMFMIKYIDFYS  461 (490)
T ss_pred             HHHHHHHHHHHHHhhhcCCCcchhcceeccCCCCCCCCCCCCHHHHHHHHHHHHc
Confidence            56677777766543221    223563   3589999999999999999998653

>COG5160 ULP1 Protease, Ulp1 family [Posttranslational modification, protein turnover, chaperones]

Probab=96.53  E-value=0.00059  Score=58.00  Aligned_cols=51  Identities=24%  Similarity=0.460  Sum_probs=37.3

Q ss_pred             HHHHHhhHHHhhcCCCC-CC--CceeEEecCCCCCCcccchhHHHHHHHHHHhc
Q 034898            6 YILSAFKIFVAKMGNAD-RK--SFVWKKVKCPQQTTNVECGYYVIRFMKEIIES   56 (79)
Q Consensus         6 ~i~salKi~v~~~~~~~-k~--~~~Wi~~kCprQ~gg~ECGYYVMr~M~~II~~   56 (79)
                      .|+.-|+.|.-++.+.. .+  .+.-++.+||+|+||.|||-||+++......+
T Consensus       490 ~v~~~L~~Y~ldE~k~~~~k~~~~~~~~~~vPqQ~Ng~DCGV~vc~~~~~~~~~  543 (578)
T COG5160         490 PVLEFLRSYLLDEYKIQHDKDPQIKMKHCKVPQQRNGSDCGVFVCMFIRYFLEN  543 (578)
T ss_pred             HHHHHHHHHHHHHHhcccCCchhhhhhcCCCCCCCCCCccceEEEEeeeecccC
Confidence            45666777766665433 33  35667899999999999999999877665555

>KOG3246 consensus Sentrin-specific cysteine protease (Ulp1 family) [General function prediction only]

Probab=96.20  E-value=0.0053  Score=47.20  Aligned_cols=45  Identities=18%  Similarity=0.298  Sum_probs=32.3

Q ss_pred             hhHHHHHHhhHHHhhcCCCCCCCceeEEecCCCCCCcccchhHHHHHHHHH
Q 034898            3 ISNYILSAFKIFVAKMGNADRKSFVWKKVKCPQQTTNVECGYYVIRFMKEI   53 (79)
Q Consensus         3 isn~i~salKi~v~~~~~~~k~~~~Wi~~kCprQ~gg~ECGYYVMr~M~~I   53 (79)
                      .++.++.+++.|..+...+.      .+-+|++|.||+|||-+||-+-..|
T Consensus       135 ~a~~l~~kl~~ll~~~~~~~------~~~~~~qQqNgyDCG~hV~~~t~~l  179 (223)
T KOG3246|consen  135 DAKSLMKKLRALLKKKFAKR------VECKCLQQQNGYDCGLHVCCNTRVL  179 (223)
T ss_pred             HHHHHHHHHHHHHhhhhhhc------ccccChhhhcCCchhHHHHHHHHHH
Confidence            35667777777776543322      2678999999999999999765544

>KOG0778 consensus Protease, Ulp1 family [Posttranslational modification, protein turnover, chaperones]

Probab=92.07  E-value=0.056  Score=45.52  Aligned_cols=52  Identities=27%  Similarity=0.551  Sum_probs=35.5

Q ss_pred             HHHHHHhhHHHhhcCC-CCCCCc---eeE--EecC-CCCCCcccchhHHHHHHHHHHhc
Q 034898            5 NYILSAFKIFVAKMGN-ADRKSF---VWK--KVKC-PQQTTNVECGYYVIRFMKEIIES   56 (79)
Q Consensus         5 n~i~salKi~v~~~~~-~~k~~~---~Wi--~~kC-prQ~gg~ECGYYVMr~M~~II~~   56 (79)
                      |-|..||..|--.+.. ++++.+   -|.  .++| |+|.||++||-||+.|-..|-.+
T Consensus       426 nr~~~aL~~Yl~~E~~~k~~~~~d~s~w~~~~~~~iP~Q~Ng~DCG~f~c~~~~~~s~~  484 (511)
T KOG0778|consen  426 NRICDALAKYLQDESRDKSKKDFDVSGWTIEFVQNIPQQRNGSDCGMFVCKYADYISRD  484 (511)
T ss_pred             cchHHHHHHHHHHHHhhhhcCCCCccchhhhhhhccccccCCCccceEEeeechhhccC
Confidence            4555666666555553 445555   563  3455 99999999999999888776543

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	79
1euv_A	221	ULP1 protease; SUMO hydrolase, ubiquitin-like prot	98.67
2bkr_A	212	Sentrin-specific protease 8; protein-binding-hydro	98.56
2oix_A	186	Xanthomonas outer protein D; CLAN CE family 48 cys	98.22
1th0_A	226	SMT3-, sentrin-specific protease 2; SUMO, AXAM, SE	98.19
3eay_A	323	Sentrin-specific protease 7; ULP, SENP, SUMO, ubiq	98.08
2xph_A	238	Sentrin-specific protease 1; hydrolase, cysteine p	98.05

>1euv_A ULP1 protease; SUMO hydrolase, ubiquitin-like protease 1, SMT3 hydrolase desumoylating enzyme, cysteine protease; 1.60A {Saccharomyces cerevisiae} SCOP: d.3.1.7 PDB: 2hkp_A 2hl8_A 2hl9_A

Probab=98.67  E-value=4.5e-08  Score=68.41  Aligned_cols=51  Identities=24%  Similarity=0.389  Sum_probs=40.6

Q ss_pred             HHHHHhhHHHhhcCCCC-CCCceeEEecCCCCCCcccchhHHHHHHHHHHhc
Q 034898            6 YILSAFKIFVAKMGNAD-RKSFVWKKVKCPQQTTNVECGYYVIRFMKEIIES   56 (79)
Q Consensus         6 ~i~salKi~v~~~~~~~-k~~~~Wi~~kCprQ~gg~ECGYYVMr~M~~II~~   56 (79)
                      .++.+++-|..+....+ +..++.+.++||+|.||++||.||+.||..+..+
T Consensus       143 ~i~~~l~~~l~~e~~~~~~~~~~~~~~~~PqQ~N~~DCGvfv~~~~~~~~~~  194 (221)
T 1euv_A          143 AILTDLQKYVMEESKHTIGEDFDLIHLDCPQQPNGYDCGIYVCMNTLYGSAD  194 (221)
T ss_dssp             HHHHHHHHHHHHHTTSSSCTTCEEEEECCCCCSSSSTHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHHhcCCCceEeecCCCCCCCCcCHHHHHHHHHHHHhCC
Confidence            46777888876655433 4567788999999999999999999999887655

>2bkr_A Sentrin-specific protease 8; protein-binding-hydrolase complex, ubiquitin, hydrolase, Pro thiol protease, UBL conjugation pathway, ubiquitin/hydrolas complex; 1.90A {Homo sapiens} SCOP: d.3.1.7 PDB: 2bkq_A 1xt9_A

Probab=98.56  E-value=8.2e-08  Score=66.19  Aligned_cols=47  Identities=21%  Similarity=0.524  Sum_probs=35.9

Q ss_pred             HHHHhhHHHhhcCCCCCCCceeEEecCCCCCCcccchhHHHHHHHHHHhcC
Q 034898            7 ILSAFKIFVAKMGNADRKSFVWKKVKCPQQTTNVECGYYVIRFMKEIIESQ   57 (79)
Q Consensus         7 i~salKi~v~~~~~~~k~~~~Wi~~kCprQ~gg~ECGYYVMr~M~~II~~~   57 (79)
                      +...|+-+......    ...|..++||+|.||+|||.|||.||..+..+-
T Consensus       132 l~~~l~~~l~~~~~----~~~~~~~~~PqQ~N~~DCGvfvl~~~~~l~~~~  178 (212)
T 2bkr_A          132 VAEKLEAFLGRKGD----KLAFVEEKAPAQQNSYDCGMYVICNTEALCQNF  178 (212)
T ss_dssp             HHHHHHHHHSCTTC----CCCEEECCCCCCSSSSTHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhCCccc----cceEeECCCCCCCCCCcHHHHHHHHHHHHHHHh
Confidence            44555555443322    356899999999999999999999999988764

>2oix_A Xanthomonas outer protein D; CLAN CE family 48 cysteine protease, type III secreted effec desumoylating enzyme; 1.80A {Xanthomonas euvesicatoria} PDB: 2oiv_A

Probab=98.22  E-value=1.1e-06  Score=60.64  Aligned_cols=29  Identities=10%  Similarity=0.070  Sum_probs=24.3

Q ss_pred             eeEEecCCCCCCcccchhHHHHHHHHHHh
Q 034898           27 VWKKVKCPQQTTNVECGYYVIRFMKEIIE   55 (79)
Q Consensus        27 ~Wi~~kCprQ~gg~ECGYYVMr~M~~II~   55 (79)
                      ++...+||+|.||+|||.||+.|+..+..
T Consensus       121 ~~~~~~~PqQ~Ng~DCGvfv~~~~~~l~~  149 (186)
T 2oix_A          121 QTHEMPIAIQSDGYSAGDHVLTGIEVLAH  149 (186)
T ss_dssp             GCEEECBCCCC--CCHHHHHHHHHHHHHH
T ss_pred             ccccCCCCCCCCCCCHHHHHHHHHHHHHH
Confidence            47789999999999999999999998864

>1th0_A SMT3-, sentrin-specific protease 2; SUMO, AXAM, SENP, ULP, cell cycle, hydrolase; 2.20A {Homo sapiens} SCOP: d.3.1.7 PDB: 1tgz_A 2io0_A 2io1_A 2io2_A 2io3_A

Probab=98.19  E-value=2.5e-06  Score=59.53  Aligned_cols=26  Identities=23%  Similarity=0.543  Sum_probs=23.8

Q ss_pred             ecCCCCCCcccchhHHHHHHHHHHhc
Q 034898           31 VKCPQQTTNVECGYYVIRFMKEIIES   56 (79)
Q Consensus        31 ~kCprQ~gg~ECGYYVMr~M~~II~~   56 (79)
                      +.||+|.||++||.||+.||..+..+
T Consensus       174 ~~~PqQ~Ng~DCGvfvl~~~~~~~~~  199 (226)
T 1th0_A          174 HEIPQQLNGSDCGMFTCKYADYISRD  199 (226)
T ss_dssp             TTSCCCCSSSCHHHHHHHHHHHHTTT
T ss_pred             CCCCCCCCCCCHHHHHHHHHHHHhCC
Confidence            58999999999999999999988765

>3eay_A Sentrin-specific protease 7; ULP, SENP, SUMO, ubiquitin, crystal, alternative splicing, hydrolase, phosphoprotein, polymorphism, thiol protease; 2.40A {Homo sapiens}

Probab=98.08  E-value=1.5e-06  Score=66.43  Aligned_cols=52  Identities=12%  Similarity=0.309  Sum_probs=37.7

Q ss_pred             HHHHHhhHHHhhcCCCC------CCCcee--EEecCCCCCCcccchhHHHHHHHHHHhcC
Q 034898            6 YILSAFKIFVAKMGNAD------RKSFVW--KKVKCPQQTTNVECGYYVIRFMKEIIESQ   57 (79)
Q Consensus         6 ~i~salKi~v~~~~~~~------k~~~~W--i~~kCprQ~gg~ECGYYVMr~M~~II~~~   57 (79)
                      .+...|+-|...+-..+      ...-.|  ..++||+|.||+|||.|||+||..+..+.
T Consensus       221 ~~~~~Lr~YL~~E~~~k~~~~~~f~~~~~~~~~~~~P~Q~N~~DCGvfvl~~~e~~~~~~  280 (323)
T 3eay_A          221 NTVQNLREYLEVEWEVKLKTHRQFSKTNMVDLCPKVPKQDNSSDCGVYLLQYVESFFKDP  280 (323)
T ss_dssp             HHHHHHHHHHHHHHHHHHSSCCCCCTTTSCEECCBCCCCCSTTCHHHHHHHHHHHHHHSC
T ss_pred             hHHHHHHHHHHHHHHhhcCCCcCCCHhHceeccCCCCCcCCCCcHHHHHHHHHHHHHhCC
Confidence            45666777666553322      112234  56899999999999999999999998776

>2xph_A Sentrin-specific protease 1; hydrolase, cysteine protease, thiol protease; 2.40A {Homo sapiens} PDB: 2xre_A 2iyc_A 2iyd_A 2iy1_A 2iy0_A 2ckg_A 2ckh_A 2g4d_A

Probab=98.05  E-value=6.6e-06  Score=57.98  Aligned_cols=28  Identities=21%  Similarity=0.559  Sum_probs=24.8

Q ss_pred             EecCCCCCCcccchhHHHHHHHHHHhcC
Q 034898           30 KVKCPQQTTNVECGYYVIRFMKEIIESQ   57 (79)
Q Consensus        30 ~~kCprQ~gg~ECGYYVMr~M~~II~~~   57 (79)
                      .++||+|.||++||.||+.||..+..+.
T Consensus       185 ~~~~PqQ~Ng~DCGvfvl~~~e~~~~~~  212 (238)
T 2xph_A          185 SQEIPQQMNGSDCGMFACKYADCITKDR  212 (238)
T ss_dssp             SSSSCCCSBGGGHHHHHHHHHHHHHTTC
T ss_pred             CCCCCCCCCCCCHHHHHHHHHHHHhcCC
Confidence            4689999999999999999998887654

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	79
d1euva_	221	Ulp1 protease C-terminal domain {Baker's yeast (Sa	98.69
d2iy1a1	225	Sentrin-specific protease 1 {Human (Homo sapiens)	98.59
d1th0a_	226	Sentrin-specific protease 2, SENP2 {Human (Homo sa	98.48
d2bkra1	212	Sentrin-specific protease 8, SENP8 {Human (Homo sa	98.4

>d1euva_ d.3.1.7 (A:) Ulp1 protease C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Adenain-like
domain: Ulp1 protease C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.69  E-value=1.7e-08  Score=68.36  Aligned_cols=52  Identities=23%  Similarity=0.380  Sum_probs=41.4

Q ss_pred             HHHHHhhHHHhhcCCCC-CCCceeEEecCCCCCCcccchhHHHHHHHHHHhcC
Q 034898            6 YILSAFKIFVAKMGNAD-RKSFVWKKVKCPQQTTNVECGYYVIRFMKEIIESQ   57 (79)
Q Consensus         6 ~i~salKi~v~~~~~~~-k~~~~Wi~~kCprQ~gg~ECGYYVMr~M~~II~~~   57 (79)
                      .+...++.+........ .....++..+||+|.||+|||.||+.||..+..+.
T Consensus       143 ~i~~~l~~~l~~~~~~~~~~~~~~~~~~~PqQ~N~~DCGvfvl~~~~~~~~~~  195 (221)
T d1euva_         143 AILTDLQKYVMEESKHTIGEDFDLIHLDCPQQPNGYDCGIYVCMNTLYGSADA  195 (221)
T ss_dssp             HHHHHHHHHHHHHTTSSSCTTCEEEEECCCCCSSSSTHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHHHhhcCCCCeeeeccCCCCCCCCChHHHHHHHHHHHhCCC
Confidence            35666666665555544 67789999999999999999999999998887654

>d2iy1a1 d.3.1.7 (A:419-643) Sentrin-specific protease 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Adenain-like
domain: Sentrin-specific protease 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.59  E-value=1.4e-08  Score=67.24  Aligned_cols=44  Identities=16%  Similarity=0.298  Sum_probs=31.9

Q ss_pred             eEEecCCCCCCcccchhHHHHHHHHHHhcCccch-hhhhhhhhhh
Q 034898           28 WKKVKCPQQTTNVECGYYVIRFMKEIIESQDDSI-KKCVCWTRQL   71 (79)
Q Consensus        28 Wi~~kCprQ~gg~ECGYYVMr~M~~II~~~~~~i-~~~~~~~~~~   71 (79)
                      +...+||+|.||++||+||++||..+..+....+ ++.+..-|+.
T Consensus       171 ~~~~~~pqQ~Ng~DCGvfvl~~~~~~~~~~~~~~~q~~~~~~R~~  215 (225)
T d2iy1a1         171 KKSQEIPQQMNGSDAGMFACKYADCITKDRPINFTQQHMPYFRKR  215 (225)
T ss_dssp             CCTTTSCCCCSSSTHHHHHHHHHHHHHTTCCCCCCGGGHHHHHHH
T ss_pred             cccccCCCCCCCCChHHHHHHHHHHHhCCCCCCcCHHHHHHHHHH
Confidence            3456899999999999999999999987643222 3444444543

>d1th0a_ d.3.1.7 (A:) Sentrin-specific protease 2, SENP2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Adenain-like
domain: Sentrin-specific protease 2, SENP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.48  E-value=3.3e-08  Score=65.40  Aligned_cols=42  Identities=19%  Similarity=0.353  Sum_probs=30.8

Q ss_pred             EEecCCCCCCcccchhHHHHHHHHHHhcCccc-hhhhhhhhhh
Q 034898           29 KKVKCPQQTTNVECGYYVIRFMKEIIESQDDS-IKKCVCWTRQ   70 (79)
Q Consensus        29 i~~kCprQ~gg~ECGYYVMr~M~~II~~~~~~-i~~~~~~~~~   70 (79)
                      ...+||+|.||++||+|||+||..+..+.... -++.+..-|+
T Consensus       172 ~~~~~pqQ~N~~DCGvfvl~~~~~~~~~~~~~~tq~di~~~R~  214 (226)
T d1th0a_         172 KPHEIPQQLNGSDCGMFTCKYADYISRDKPITFTQHQMPLFRK  214 (226)
T ss_dssp             CTTTSCCCCSSSCHHHHHHHHHHHHTTTCCCCCCGGGHHHHHH
T ss_pred             ccCCCCCCCCCCCHHHHHHHHHHHHhCCCCCCcCHHHHHHHHH
Confidence            34679999999999999999999998764322 2344444454

>d2bkra1 d.3.1.7 (A:1-212) Sentrin-specific protease 8, SENP8 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Adenain-like
domain: Sentrin-specific protease 8, SENP8
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.40  E-value=1.9e-07  Score=61.47  Aligned_cols=36  Identities=22%  Similarity=0.481  Sum_probs=30.6

Q ss_pred             CCCCCCceeEEecCCCCCCcccchhHHHHHHHHHHh
Q 034898           20 NADRKSFVWKKVKCPQQTTNVECGYYVIRFMKEIIE   55 (79)
Q Consensus        20 ~~~k~~~~Wi~~kCprQ~gg~ECGYYVMr~M~~II~   55 (79)
                      +.+.....+...+||+|.||++||.||+.||..+..
T Consensus       141 ~~~~~~~~~~~~~~p~Q~N~~DCGvfv~~~~~~l~~  176 (212)
T d2bkra1         141 GRKGDKLAFVEEKAPAQQNSYDCGMYVICNTEALCQ  176 (212)
T ss_dssp             SCTTCCCCEEECCCCCCSSSSTHHHHHHHHHHHHHH
T ss_pred             ccccCceeeeecccCCCCCCCChHHHHHHHHHHHHH
Confidence            344556778899999999999999999999988863