Citrus Sinensis ID: 034900

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------8
Protein Sequence
MLNVGQELLQQDAPQSNQYRFGFHQPPLNSVNHLHLHCLALPFIPRWKHVKYLSLGPLGGFIEAEKLLEKIKPLSSTSS
Secondary Structure (PSIPRED)
cHHHHHHHHHHHcccccccEEEEcccccccccccEEEEEcccccccccEEEEEccccccEEEEHHHHHHHHcccccccc
Secondary Structure Prediction (SSPRO)
cHHHHHHHHHHcccccHHcccccccccccccccEEEEEEcccccccccEEEEccccccccHEHHHHHHHHHcccccccc
Coil and Loop (DISEMBL)
MLNVGQELlqqdapqsnqyrfgfhqpplnsvnhlhlhclalpfiprwkhvkylslgplggfIEAEKLLEKikplsstss
Flexible Loop (DISEMBL)
MLNVGQELLQQDAPQSNQYRFGFHQPPLNSVNHLHLHCLALPFIPRWKHVKYLSLGPLGGFIEAEKLlekikplsstss
Low Complexity Region (SEG)
MLNVGQELLQQDAPQSNQYRFGFHQPPLNSVNHLHLHCLALPFIPRWKHVKYLSLGPLGGFIEAEKLLEKIKPLSSTSS
Disordered region (IsUnstruct)
******************YRFGFHQPPLNSVNHLHLHCLALPFIPRWKHVKYLSLGPLGGFIEAEKLL***********
Disordered Region (DISOPRED)
****GQELLQQDAPQSNQYRFGFHQPPLNSVNHLHLHCLALPFIPRWKHVKYLSLGPLGGFIEAEKLLE***P******
Disordered Region (DISEMBL)
MLNVGQELLQQDAPQSNQYRFGFHQPPLNSVNHLHLHCLALPFIPRWKHVKYLSLGPLGGFIEAEKLLEKI********
Disordered Region (DISPRO)
MLNVGQELLQQDAPQSNQYRFGFHQPPLNSVNHLHLHCLALPFIPRWKHVKYLSLGPLGGFIEAEKLLEKIKP******
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MLNVGQELLQQDAPQSNQYRFGFHQPPLNSVNHLHLHCLALPFIPRWKHVKYLSLGPLGGFIEAEKLLEKIKPLSSTSS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	79
359474401	146	PREDICTED: histidine triad nucleotide-bi	0.924	0.5	0.849	8e-30
255638404	153	unknown [Glycine max]	0.974	0.503	0.807	2e-29
356540637	149	PREDICTED: histidine triad nucleotide-bi	0.974	0.516	0.807	2e-29
297800468	146	histidine triad family protein [Arabidop	0.949	0.513	0.802	1e-28
224074149	147	predicted protein [Populus trichocarpa]	0.911	0.489	0.835	7e-28
242076596	168	hypothetical protein SORBIDRAFT_06g02375	1.0	0.470	0.721	7e-28
294461918	142	unknown [Picea sitchensis]	0.987	0.549	0.717	1e-27
297800462	146	histidine triad family protein [Arabidop	0.949	0.513	0.776	2e-27
21594530	209	unknown [Arabidopsis thaliana]	0.949	0.358	0.776	2e-27
18414694	146	protein histidine triad nucleotide-bindi	0.949	0.513	0.776	2e-27

>gi|359474401|ref|XP_002266460.2| PREDICTED: histidine triad nucleotide-binding protein 3-like [Vitis vinifera]

 Score =  134 bits (336), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 62/73 (84%), Positives = 65/73 (89%)

Query: 1   MLNVGQELLQQDAPQSNQYRFGFHQPPLNSVNHLHLHCLALPFIPRWKHVKYLSLGPLGG 60
           MLNVGQ LL +DAP S +Y FGFH+PP NSVNHLHLHCLALPF PRWK VKYLSLGPLGG
Sbjct: 70  MLNVGQTLLHRDAPHSMEYSFGFHRPPFNSVNHLHLHCLALPFTPRWKRVKYLSLGPLGG 129

Query: 61  FIEAEKLLEKIKP 73
           FIEAEKLLEKIKP
Sbjct: 130 FIEAEKLLEKIKP 142

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255638404|gb|ACU19512.1| unknown [Glycine max]

 Score =  133 bits (334), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 63/78 (80%), Positives = 68/78 (87%), Gaps = 1/78 (1%)

Query: 1   MLNVGQELLQQDAPQSNQYRFGFHQPPLNSVNHLHLHCLALPFIPRWKHVKYLSLGPLGG 60
           ML VG+ LL +DAPQS QYRFGFHQPPLNSVNHLHLHCLALP+ PRW+ +KYLSLGPL G
Sbjct: 75  MLEVGKTLLNRDAPQSQQYRFGFHQPPLNSVNHLHLHCLALPYTPRWRSIKYLSLGPL-G 133

Query: 61  FIEAEKLLEKIKPLSSTS 78
           FIEAEK LEKIKPLS  S
Sbjct: 134 FIEAEKFLEKIKPLSVQS 151

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356540637|ref|XP_003538793.1| PREDICTED: histidine triad nucleotide-binding protein 3-like [Glycine max]

 Score =  132 bits (333), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 63/78 (80%), Positives = 68/78 (87%), Gaps = 1/78 (1%)

Query: 1   MLNVGQELLQQDAPQSNQYRFGFHQPPLNSVNHLHLHCLALPFIPRWKHVKYLSLGPLGG 60
           ML VG+ LL +DAPQS QYRFGFHQPPLNSVNHLHLHCLALP+ PRW+ +KYLSLGPL G
Sbjct: 71  MLEVGKTLLNRDAPQSQQYRFGFHQPPLNSVNHLHLHCLALPYTPRWRSIKYLSLGPL-G 129

Query: 61  FIEAEKLLEKIKPLSSTS 78
           FIEAEK LEKIKPLS  S
Sbjct: 130 FIEAEKFLEKIKPLSVQS 147

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297800468|ref|XP_002868118.1| histidine triad family protein [Arabidopsis lyrata subsp. lyrata] gi|297313954|gb|EFH44377.1| histidine triad family protein [Arabidopsis lyrata subsp. lyrata]

 Score =  129 bits (325), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 61/76 (80%), Positives = 68/76 (89%), Gaps = 1/76 (1%)

Query: 1   MLNVGQELLQQDAPQSNQYRFGFHQPPLNSVNHLHLHCLALPFIPRWKHVKYLSLGPLGG 60
           MLNVGQELLQ+DAPQ N +RFGFHQPP NSV+HLHLHC ALP++PRWK +KY SLGPLGG
Sbjct: 70  MLNVGQELLQKDAPQ-NIHRFGFHQPPFNSVDHLHLHCFALPYVPRWKAIKYKSLGPLGG 128

Query: 61  FIEAEKLLEKIKPLSS 76
           FIEAE LLEKI+PL S
Sbjct: 129 FIEAETLLEKIRPLLS 144

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224074149|ref|XP_002304274.1| predicted protein [Populus trichocarpa] gi|222841706|gb|EEE79253.1| predicted protein [Populus trichocarpa]

 Score =  127 bits (320), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 61/73 (83%), Positives = 65/73 (89%), Gaps = 1/73 (1%)

Query: 1   MLNVGQELLQQDAPQSNQYRFGFHQPPLNSVNHLHLHCLALPFIPRWKHVKYLSLGPLGG 60
           MLNVG+ LL  DAPQS QYRFGFHQPP NSV+HLHLHCLALPFIPRWKHVKY+SLG   G
Sbjct: 70  MLNVGKTLLHLDAPQSKQYRFGFHQPPFNSVDHLHLHCLALPFIPRWKHVKYMSLGH-HG 128

Query: 61  FIEAEKLLEKIKP 73
           FIEAE+LLEKIKP
Sbjct: 129 FIEAEQLLEKIKP 141

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|242076596|ref|XP_002448234.1| hypothetical protein SORBIDRAFT_06g023750 [Sorghum bicolor] gi|241939417|gb|EES12562.1| hypothetical protein SORBIDRAFT_06g023750 [Sorghum bicolor]

 Score =  127 bits (320), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 57/79 (72%), Positives = 66/79 (83%)

Query: 1   MLNVGQELLQQDAPQSNQYRFGFHQPPLNSVNHLHLHCLALPFIPRWKHVKYLSLGPLGG 60
           M+ VG++LL QDAP S ++RFGFHQPP NSVNHLHLHCLALPF+P W+ VKY  LGPLGG
Sbjct: 90  MVKVGKDLLNQDAPNSEEHRFGFHQPPFNSVNHLHLHCLALPFMPSWRQVKYTPLGPLGG 149

Query: 61  FIEAEKLLEKIKPLSSTSS 79
           FIEAEKLLE+IKP +   S
Sbjct: 150 FIEAEKLLERIKPEAEVYS 168

Source: Sorghum bicolor

Species: Sorghum bicolor

Genus: Sorghum

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|294461918|gb|ADE76515.1| unknown [Picea sitchensis]

 Score =  126 bits (317), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 56/78 (71%), Positives = 66/78 (84%)

Query: 1   MLNVGQELLQQDAPQSNQYRFGFHQPPLNSVNHLHLHCLALPFIPRWKHVKYLSLGPLGG 60
           ML +GQ LLQ+DAP + +YRFGFHQPP NSV+HLHLHC ALP+IPRWK +KYLS GPLGG
Sbjct: 65  MLKIGQSLLQRDAPGAVEYRFGFHQPPFNSVSHLHLHCFALPYIPRWKKIKYLSYGPLGG 124

Query: 61  FIEAEKLLEKIKPLSSTS 78
           FI+AE LL KIKP+ + S
Sbjct: 125 FIKAEDLLNKIKPIDNNS 142

Source: Picea sitchensis

Species: Picea sitchensis

Genus: Picea

Family: Pinaceae

Order: Coniferales

Class: Coniferopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297800462|ref|XP_002868115.1| histidine triad family protein [Arabidopsis lyrata subsp. lyrata] gi|297313951|gb|EFH44374.1| histidine triad family protein [Arabidopsis lyrata subsp. lyrata]

 Score =  126 bits (317), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 59/76 (77%), Positives = 68/76 (89%), Gaps = 1/76 (1%)

Query: 1   MLNVGQELLQQDAPQSNQYRFGFHQPPLNSVNHLHLHCLALPFIPRWKHVKYLSLGPLGG 60
           ML+VGQELL++DAPQ N +RFGFHQPP NSV+HLHLHC ALP++PRWK +KY SLGPLGG
Sbjct: 70  MLSVGQELLRKDAPQ-NIHRFGFHQPPFNSVDHLHLHCFALPYVPRWKAIKYKSLGPLGG 128

Query: 61  FIEAEKLLEKIKPLSS 76
           FIEAE LLEKI+PL S
Sbjct: 129 FIEAETLLEKIRPLLS 144

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|21594530|gb|AAM66018.1| unknown [Arabidopsis thaliana]

 Score =  126 bits (316), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 59/76 (77%), Positives = 68/76 (89%), Gaps = 1/76 (1%)

Query: 1   MLNVGQELLQQDAPQSNQYRFGFHQPPLNSVNHLHLHCLALPFIPRWKHVKYLSLGPLGG 60
           ML+VGQ+LLQ+DAPQS  +RFGFHQPP NSV+HLHLHC ALP++PRWK +KY SLGPLGG
Sbjct: 70  MLSVGQQLLQKDAPQS-IHRFGFHQPPFNSVDHLHLHCFALPYVPRWKAIKYKSLGPLGG 128

Query: 61  FIEAEKLLEKIKPLSS 76
           FIEAE LLEKI+PL S
Sbjct: 129 FIEAETLLEKIRPLLS 144

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18414694|ref|NP_567507.1| protein histidine triad nucleotide-binding 4 [Arabidopsis thaliana] gi|28466899|gb|AAO44058.1| At4g16566 [Arabidopsis thaliana] gi|51968554|dbj|BAD42969.1| unnamed protein product [Arabidopsis thaliana] gi|51970584|dbj|BAD43984.1| unnamed protein product [Arabidopsis thaliana] gi|332658371|gb|AEE83771.1| protein histidine triad nucleotide-binding 4 [Arabidopsis thaliana]

 Score =  125 bits (315), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 59/76 (77%), Positives = 68/76 (89%), Gaps = 1/76 (1%)

Query: 1   MLNVGQELLQQDAPQSNQYRFGFHQPPLNSVNHLHLHCLALPFIPRWKHVKYLSLGPLGG 60
           ML+VGQ+LLQ+DAPQS  +RFGFHQPP NSV+HLHLHC ALP++PRWK +KY SLGPLGG
Sbjct: 70  MLSVGQQLLQKDAPQSI-HRFGFHQPPFNSVDHLHLHCFALPYVPRWKAIKYKSLGPLGG 128

Query: 61  FIEAEKLLEKIKPLSS 76
           FIEAE LLEKI+PL S
Sbjct: 129 FIEAETLLEKIRPLLS 144

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	79
TAIR|locus:505006484	146	HINT4 "AT4G16566" [Arabidopsis	0.949	0.513	0.776	9.1e-29
DICTYBASE|DDB_G0292298	166	DDB_G0292298 [Dictyostelium di	0.658	0.313	0.423	4.8e-07
ZFIN|ZDB-GENE-100922-168	160	hint3 "histidine triad nucleot	0.898	0.443	0.363	2.6e-06
UNIPROTKB|F1S2W6	182	HINT3 "Uncharacterized protein	0.822	0.357	0.379	3.7e-06
UNIPROTKB|Q9NQE9	182	HINT3 "Histidine triad nucleot	0.898	0.390	0.356	4.5e-05
UNIPROTKB|F1PKA3	116	HINT3 "Uncharacterized protein	0.898	0.612	0.356	0.0001
RGD|621603	175	Hint3 "histidine triad nucleot	0.506	0.228	0.439	0.00026
UNIPROTKB|F1P5K8	316	APTX "Aprataxin" [Gallus gallu	0.848	0.212	0.323	0.00035
UNIPROTKB|P61798	316	APTX "Aprataxin" [Gallus gallu	0.848	0.212	0.323	0.00035
UNIPROTKB|F1P585	53	HINT3 "Uncharacterized protein	0.607	0.905	0.421	0.00045

TAIR|locus:505006484 HINT4 "AT4G16566" [Arabidopsis thaliana (taxid:3702)]

 Score = 320 (117.7 bits), Expect = 9.1e-29, P = 9.1e-29
 Identities = 59/76 (77%), Positives = 68/76 (89%)

Query:     1 MLNVGQELLQQDAPQSNQYRFGFHQPPLNSVNHLHLHCLALPFIPRWKHVKYLSLGPLGG 60
             ML+VGQ+LLQ+DAPQS  +RFGFHQPP NSV+HLHLHC ALP++PRWK +KY SLGPLGG
Sbjct:    70 MLSVGQQLLQKDAPQSI-HRFGFHQPPFNSVDHLHLHCFALPYVPRWKAIKYKSLGPLGG 128

Query:    61 FIEAEKLLEKIKPLSS 76
             FIEAE LLEKI+PL S
Sbjct:   129 FIEAETLLEKIRPLLS 144

GO:0000166 "nucleotide binding" evidence=ISS

GO:0003824 "catalytic activity" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0009117 "nucleotide metabolic process" evidence=ISS

GO:0005777 "peroxisome" evidence=IDA

GO:0004780 "sulfate adenylyltransferase (ADP) activity" evidence=IDA

GO:0006790 "sulfur compound metabolic process" evidence=IDA

GO:0009150 "purine ribonucleotide metabolic process" evidence=IDA

GO:0047627 "adenylylsulfatase activity" evidence=IDA

DICTYBASE|DDB_G0292298 DDB_G0292298 [Dictyostelium discoideum (taxid:44689)]

 Score = 115 (45.5 bits), Expect = 4.8e-07, P = 4.8e-07
 Identities = 22/52 (42%), Positives = 28/52 (53%)

Query:     1 MLNVGQELLQQDAPQSNQYRFGFHQPPLNSVNHLHLHCLALPFIPRWKHVKY 52
             M  V  +L+ +  P  +    GFH PP  SV HLHLH L  PF P++K   Y
Sbjct:    91 MKQVADQLIAEKFPGQSGIVLGFHSPPFYSVKHLHLHLLVPPFTPKFKKHSY 142

GO:0008152 "metabolic process" evidence=IEA

GO:0003824 "catalytic activity" evidence=IEA

ZFIN|ZDB-GENE-100922-168 hint3 "histidine triad nucleotide binding protein 3" [Danio rerio (taxid:7955)]

 Score = 108 (43.1 bits), Expect = 2.6e-06, P = 2.6e-06
 Identities = 28/77 (36%), Positives = 45/77 (58%)

Query:     1 MLNVGQELLQQD-APQSNQYRFGFHQPPLNSVNHLHLHCLALPFIPRWKHVKYLSLGPLG 59
             ML  G+E+L+++     +  RFGFH PP  SV HLHLH LA P + +   +  L +  L 
Sbjct:    86 MLETGKEILEKNNVTDLSDVRFGFHWPPFCSVTHLHLHVLA-P-VSQMGFMSRL-IYRLN 142

Query:    60 G--FIEAEKLLEKIKPL 74
                F+ A++LL+++  +
Sbjct:   143 SYWFVTADQLLQRLNSM 159

GO:0003824 "catalytic activity" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

UNIPROTKB|F1S2W6 HINT3 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 107 (42.7 bits), Expect = 3.7e-06, P = 3.7e-06
 Identities = 30/79 (37%), Positives = 44/79 (55%)

Query:     1 MLNVGQELLQQDA-PQSNQYRFGFHQPPLNSVNHLHLHCLA----LPFIPR--WKHVKYL 53
             M+ VG+ +L+++     N  R GFH PP  S++HLHLH LA    L F+ R  +K   Y 
Sbjct:   110 MVTVGKTILERNNFTDFNNIRMGFHIPPFCSISHLHLHVLAPVDHLSFLSRLVYKENSYW 169

Query:    54 SLGPLGGFIEAEKLLEKIK 72
                    FI A+ L+EK++
Sbjct:   170 -------FITADYLIEKLR 181

GO:0005739 "mitochondrion" evidence=IEA

GO:0005730 "nucleolus" evidence=IEA

GO:0003824 "catalytic activity" evidence=IEA

UNIPROTKB|Q9NQE9 HINT3 "Histidine triad nucleotide-binding protein 3" [Homo sapiens (taxid:9606)]

 Score = 98 (39.6 bits), Expect = 4.5e-05, P = 4.5e-05
 Identities = 26/73 (35%), Positives = 39/73 (53%)

Query:     1 MLNVGQELLQQDA-PQSNQYRFGFHQPPLNSVNHLHLHCLALPFIPRWKHVKYLSLGPLG 59
             M+ VG+ +L+++        R GFH PP  S++HLHLH LA P        K +      
Sbjct:   110 MVTVGKTILERNNFTDFTNVRMGFHMPPFCSISHLHLHVLA-PVDQLGFLSKLVYRVNSY 168

Query:    60 GFIEAEKLLEKIK 72
              FI A+ L+EK++
Sbjct:   169 WFITADHLIEKLR 181

GO:0000166 "nucleotide binding" evidence=IEA

GO:0016787 "hydrolase activity" evidence=IEA

GO:0005730 "nucleolus" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0005739 "mitochondrion" evidence=IDA

UNIPROTKB|F1PKA3 HINT3 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 93 (37.8 bits), Expect = 0.00010, P = 0.00010
 Identities = 26/73 (35%), Positives = 39/73 (53%)

Query:     1 MLNVGQELLQQDA-PQSNQYRFGFHQPPLNSVNHLHLHCLALPFIPRWKHVKYLSLGPLG 59
             M+ VG+ +L+++        R GFH PP  S++HLHLH LA P        K +      
Sbjct:    44 MVAVGKTILERNNFTDFKNARMGFHMPPFCSISHLHLHVLA-PVDQLGFLSKLVYRVNSY 102

Query:    60 GFIEAEKLLEKIK 72
              FI A+ L+EK++
Sbjct:   103 WFITADCLIEKLR 115

GO:0003824 "catalytic activity" evidence=IEA

RGD|621603 Hint3 "histidine triad nucleotide binding protein 3" [Rattus norvegicus (taxid:10116)]

 Score = 91 (37.1 bits), Expect = 0.00026, P = 0.00026
 Identities = 18/41 (43%), Positives = 26/41 (63%)

Query:     1 MLNVGQELLQQDA-PQSNQYRFGFHQPPLNSVNHLHLHCLA 40
             M+ VG+ +L+++        R GFH PP  SV+HLHLH +A
Sbjct:   103 MVTVGKTILERNNFTDFTDVRMGFHVPPFCSVSHLHLHVIA 143

GO:0003824 "catalytic activity" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005730 "nucleolus" evidence=IEA;ISO

GO:0005737 "cytoplasm" evidence=IEA;ISO

GO:0005739 "mitochondrion" evidence=IEA;ISO

GO:0016787 "hydrolase activity" evidence=IEA

UNIPROTKB|F1P5K8 APTX "Aprataxin" [Gallus gallus (taxid:9031)]

 Score = 95 (38.5 bits), Expect = 0.00035, P = 0.00035
 Identities = 23/71 (32%), Positives = 43/71 (60%)

Query:     4 VGQELLQQ-DAPQSNQYRFGFHQPPLNSVNHLHLHCLALPF-IPRWKHVKYLSLGPLGGF 61
             VGQ+++QQ  A +S ++R G+H  P  S++ LHLH ++  F  P  K  K+ +      F
Sbjct:   204 VGQKMIQQCPAKESLEFRLGYHAIP--SMSQLHLHVISQDFDSPALKTKKHWNSFTTEYF 261

Query:    62 IEAEKLLEKIK 72
             + +E+++E ++
Sbjct:   262 LNSEEVIEMVR 272

GO:0003824 "catalytic activity" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

UNIPROTKB|P61798 APTX "Aprataxin" [Gallus gallus (taxid:9031)]

 Score = 95 (38.5 bits), Expect = 0.00035, P = 0.00035
 Identities = 23/71 (32%), Positives = 43/71 (60%)

Query:     4 VGQELLQQ-DAPQSNQYRFGFHQPPLNSVNHLHLHCLALPF-IPRWKHVKYLSLGPLGGF 61
             VGQ+++QQ  A +S ++R G+H  P  S++ LHLH ++  F  P  K  K+ +      F
Sbjct:   204 VGQKMIQQCPAKESLEFRLGYHAIP--SMSQLHLHVISQDFDSPALKTKKHWNSFTTEYF 261

Query:    62 IEAEKLLEKIK 72
             + +E+++E ++
Sbjct:   262 LNSEEVIEMVR 272

GO:0008270 "zinc ion binding" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

GO:0006281 "DNA repair" evidence=IEA

GO:0005654 "nucleoplasm" evidence=IEA

GO:0005730 "nucleolus" evidence=IEA

GO:0033699 "DNA 5'-adenosine monophosphate hydrolase activity" evidence=IMP

UNIPROTKB|F1P585 HINT3 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 87 (35.7 bits), Expect = 0.00045, P = 0.00045
 Identities = 24/57 (42%), Positives = 34/57 (59%)

Query:    20 RFGFHQPPLNSVNHLHLHCLA----LPFIPRWKHVKYLSLGPLGGFIEAEKLLEKIK 72
             R GFH PP  S++HLHLH LA    L F+ R  + +  S      FI AE+L+E+++
Sbjct:     1 RMGFHWPPFCSISHLHLHVLAPASQLGFLSRLIY-RINSYW----FITAEQLIERLQ 52

GO:0003824 "catalytic activity" evidence=IEA

GO:0005730 "nucleolus" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00009603001 SubName- Full=Chromosome chr2 scaffold_241, whole genome shotgun sequence; (146 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	79
cd01278	104	cd01278, aprataxin_related, aprataxin related: Apr	8e-11
pfam11969	113	pfam11969, DcpS_C, Scavenger mRNA decapping enzyme	1e-08

>gnl|CDD|238609 cd01278, aprataxin_related, aprataxin related: Aprataxin, a HINT family hydrolase is mutated in ataxia oculomotor apraxia syndrome

 Score = 52.8 bits (127), Expect = 8e-11
 Identities = 21/41 (51%), Positives = 28/41 (68%), Gaps = 1/41 (2%)

Query: 1   MLNVGQELLQQ-DAPQSNQYRFGFHQPPLNSVNHLHLHCLA 40
           M  VG+E L + D    +++RFGFH PP  SV+HLHLH +A
Sbjct: 64  METVGREKLLRSDNTDPSEFRFGFHAPPFTSVSHLHLHVIA 104

All the members of this subgroup have the conserved HxHxHxx (where x is a hydrophobic residue) signature motif. Members of this subgroup are predominantly eukaryotic in origin. Length = 104

>gnl|CDD|221348 pfam11969, DcpS_C, Scavenger mRNA decapping enzyme C-term binding

 Score = 47.2 bits (113), Expect = 1e-08
 Identities = 17/53 (32%), Positives = 25/53 (47%), Gaps = 4/53 (7%)

Query: 1   MLNVGQELLQQDAPQ--SNQYRFGFHQPPLNSVNHLHLHCLALPFIPRWKHVK 51
           M  V +++ ++   +   +  R GFH  P  SV HLHLH +A  F P      
Sbjct: 62  MREVAKKIAKEKYNEGYRDVLRLGFHYGP--SVYHLHLHVIAPDFEPGLGRKL 112

This family consists of several scavenger mRNA decapping enzymes (DcpS) and is the C-terminal region. DcpS is a scavenger pyrophosphatase that hydrolyses the residual cap structure following 3' to 5' decay of an mRNA. The association of DcpS with 3' to 5' exonuclease exosome components suggests that these two activities are linked and there is a coupled exonucleolytic decay-dependent decapping pathway. The C-terminal domain contains a histidine triad (HIT) sequence with three histidines separated by hydrophobic residues. The central histidine within the DcpS HIT motif is critical for decapping activity and defines the HIT motif as a new mRNA decapping domain, making DcpS the first member of the HIT family of proteins with a defined biological function. Length = 113

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	79
KOG4359	166	consensus Protein kinase C inhibitor-like protein	99.83
KOG0562	184	consensus Predicted hydrolase (HIT family) [Genera	99.66
PF11969	116	DcpS_C: Scavenger mRNA decapping enzyme C-term bin	99.49
cd01278	104	aprataxin_related aprataxin related: Aprataxin, a	98.74
cd01276	104	PKCI_related Protein Kinase C Interacting protein	98.07
PRK10687	119	purine nucleoside phosphoramidase; Provisional	97.61
cd00468	86	HIT_like HIT family: HIT (Histidine triad) protein	96.95
KOG2720	431	consensus Predicted hydrolase (HIT family) [Genera	96.12
KOG3969	310	consensus Uncharacterized conserved protein [Funct	96.0
cd01277	103	HINT_subgroup HINT (histidine triad nucleotide-bin	95.86
cd01275	126	FHIT FHIT (fragile histidine family): FHIT protein	94.88
PLN03103	403	GDP-L-galactose-hexose-1-phosphate guanyltransfera	94.22
PF01230	98	HIT: HIT domain; InterPro: IPR001310 The Histidine	94.11
PRK13878	746	conjugal transfer relaxase TraI; Provisional	93.91
cd00608	329	GalT Galactose-1-phosphate uridyl transferase (Gal	93.85
PRK11720	346	galactose-1-phosphate uridylyltransferase; Provisi	93.43
TIGR00209	347	galT_1 galactose-1-phosphate uridylyltransferase,	90.09
PLN02643	336	ADP-glucose phosphorylase	88.37
PF03432	242	Relaxase: Relaxase/Mobilisation nuclease domain ;	87.84
KOG3275	127	consensus Zinc-binding protein of the histidine tr	86.47
COG5075	305	Uncharacterized conserved protein [Function unknow	85.03
COG0537	138	Hit Diadenosine tetraphosphate (Ap4A) hydrolase an	84.48

>KOG4359 consensus Protein kinase C inhibitor-like protein [General function prediction only]

Probab=99.83  E-value=4.6e-21  Score=134.70  Aligned_cols=70  Identities=33%  Similarity=0.563  Sum_probs=59.9

Q ss_pred             CHHHHHHHHHhh-CCCCCcceeeeecCCCCCCcceeeeeeecCc-ccccceeeeccCCCccceecHHHHHHHhcc
Q 034900            1 MLNVGQELLQQD-APQSNQYRFGFHQPPLNSVNHLHLHCLALPF-IPRWKHVKYLSLGPLGGFIEAEKLLEKIKP   73 (79)
Q Consensus         1 M~~vg~~~l~~~-~~~~~~~r~GfH~pPf~Sv~HLHlHvi~~~~-~s~~~~~ky~~~s~~~~F~~~d~vi~~L~~   73 (79)
                      |.++|+.++++. ..+..+.|+|||.|||.||+|||||+|+++- ++-..++.|++ |  .||++++++|++|++
T Consensus        95 m~~~G~~~l~r~~~td~~~~r~GFHLPPf~SV~HLHlH~I~P~~DMgf~sKl~FrP-s--~wFK~a~~lI~~L~~  166 (166)
T KOG4359|consen   95 MVTVGKTILERNNFTDFTNVRMGFHLPPFCSVSHLHLHVIAPVDDMGFLSKLVFRP-S--YWFKTADHLIEKLRT  166 (166)
T ss_pred             HHHHHHHHHHHhccCCchheeEeccCCCcceeeeeeEeeecchHHhchhheeEeec-c--eEeeeHHHHHHHhhC
Confidence            678899998886 5778899999999999999999999999663 34445789998 4  489999999999984

>KOG0562 consensus Predicted hydrolase (HIT family) [General function prediction only]

Probab=99.66  E-value=3e-17  Score=117.56  Aligned_cols=61  Identities=26%  Similarity=0.412  Sum_probs=57.6

Q ss_pred             CCcceeeeecCCCCCCcceeeeeeecCcccccceeeeccCCCc-cceecHHHHHHHhccCCCCC
Q 034900           16 SNQYRFGFHQPPLNSVNHLHLHCLALPFIPRWKHVKYLSLGPL-GGFIEAEKLLEKIKPLSSTS   78 (79)
Q Consensus        16 ~~~~r~GfH~pPf~Sv~HLHlHvi~~~~~s~~~~~ky~~~s~~-~~F~~~d~vi~~L~~~g~~~   78 (79)
                      ...+|+|||+.|  ||.+||||||++||.|++++.|.+||||. ++|++.+++++++++.|+-+
T Consensus        82 ~~~f~vG~HavP--SM~~LHLHVISkDf~S~sLKNKKHwnSFnT~fFv~~~~~~~~~~~~G~~t  143 (184)
T KOG0562|consen   82 CNYFRVGFHAVP--SMNNLHLHVISKDFVSPSLKNKKHWNSFNTEFFVKSDDVTENVPTRGTAT  143 (184)
T ss_pred             hhheeeeeccCc--chhheeEEEeecccCCchhccchhhcccCccceeeccchhhhhhccccch
Confidence            457999999999  99999999999999999999999999998 89999999999999999754

>PF11969 DcpS_C: Scavenger mRNA decapping enzyme C-term binding; PDB: 1VLR_B 1XMM_D 1XML_B 1ST0_A 3BLA_B 3BL9_B 3BL7_B 1ST4_B 1XQU_B

Probab=99.49  E-value=1.8e-14  Score=95.12  Aligned_cols=50  Identities=42%  Similarity=0.646  Sum_probs=37.8

Q ss_pred             CHHHHHHHHHhhC---CCCCcceeeeecCCCCCCcceeeeeeecCcccccceeee
Q 034900            1 MLNVGQELLQQDA---PQSNQYRFGFHQPPLNSVNHLHLHCLALPFIPRWKHVKY   52 (79)
Q Consensus         1 M~~vg~~~l~~~~---~~~~~~r~GfH~pPf~Sv~HLHlHvi~~~~~s~~~~~ky   52 (79)
                      |.++|++++++.+   ....++++|||+||  ||.|||||||+.|+.|.+++.|.
T Consensus        63 m~~~~~~~~~~~~~~~~~~~~~~~gfH~~P--S~~HLHlHvi~~~~~s~~lk~k~  115 (116)
T PF11969_consen   63 MREVARELLKEEYPGDLDSDDIRLGFHYPP--SVYHLHLHVISPDFDSPCLKNKK  115 (116)
T ss_dssp             HHHHHHHHHHHHH-TT-EGGGEEEEEESS---SSSS-EEEEEETTS--TTSB---
T ss_pred             HHHHHHHHHHHhcccccchhhhcccccCCC--CcceEEEEEccCCCcCcccccCC
Confidence            6788999999875   34678999999999  99999999999999998887664

>cd01278 aprataxin_related aprataxin related: Aprataxin, a HINT family hydrolase is mutated in ataxia oculomotor apraxia syndrome

Probab=98.74  E-value=1.2e-08  Score=64.68  Aligned_cols=37  Identities=51%  Similarity=1.014  Sum_probs=28.2

Q ss_pred             HHHHHHHhh-CCCCCcceeeeecCCCCCCcceeeeeee
Q 034900            4 VGQELLQQD-APQSNQYRFGFHQPPLNSVNHLHLHCLA   40 (79)
Q Consensus         4 vg~~~l~~~-~~~~~~~r~GfH~pPf~Sv~HLHlHvi~   40 (79)
                      .+.+.+.+. +.+...+++|+|..|+.||.|||+|+|+
T Consensus        67 ~~~~~l~~~~~~~~~~~n~g~h~~p~~~v~H~H~Hvi~  104 (104)
T cd01278          67 VGREKLLRSDNTDPSEFRFGFHAPPFTSVSHLHLHVIA  104 (104)
T ss_pred             HHHHHHHHHcCCCccCeEEEeCCCCCcCeeeEEEEeeC
Confidence            344434433 3444579999999999999999999996

All the members of this subgroup have the conserved HxHxHxx (where x is a hydrophobic residue) signature motif. Members of this subgroup are predominantly eukaryotic in origin.

>cd01276 PKCI_related Protein Kinase C Interacting protein related (PKCI): PKCI and related proteins belong to the ubiquitous HIT family of hydrolases that act on alpha-phosphates of ribonucleotides

Probab=98.07  E-value=6e-06  Score=51.99  Aligned_cols=39  Identities=26%  Similarity=0.340  Sum_probs=30.4

Q ss_pred             HHHHHHHHHhhCCCCCcceeeeecCCC--CCCcceeeeeee
Q 034900            2 LNVGQELLQQDAPQSNQYRFGFHQPPL--NSVNHLHLHCLA   40 (79)
Q Consensus         2 ~~vg~~~l~~~~~~~~~~r~GfH~pPf--~Sv~HLHlHvi~   40 (79)
                      .+.++++++..+.+...+.++||.+|+  .+|.|||+|+|+
T Consensus        63 ~~~~~~~~~~~~~~~~~~n~~~~~g~~~g~~v~H~HiHii~  103 (104)
T cd01276          63 LSAAAKVAKDLGIAEDGYRLVINCGKDGGQEVFHLHLHLLG  103 (104)
T ss_pred             HHHHHHHHHHhCCCCCCEEEEEeCCCCCCCceeEEEEEEeC
Confidence            345566666665434679999999997  689999999996

The members of this subgroup have a conserved HxHxHxx motif (x is a hydrophobic residue) that is a signature for this family. No enzymatic activity has been reported however, for PKCI and its related members.

>PRK10687 purine nucleoside phosphoramidase; Provisional

Probab=97.61  E-value=8.9e-05  Score=49.34  Aligned_cols=41  Identities=22%  Similarity=0.376  Sum_probs=31.5

Q ss_pred             HHHHHHHHHhhCCCCCcceeeeecC--CCCCCcceeeeeeecC
Q 034900            2 LNVGQELLQQDAPQSNQYRFGFHQP--PLNSVNHLHLHCLALP   42 (79)
Q Consensus         2 ~~vg~~~l~~~~~~~~~~r~GfH~p--Pf~Sv~HLHlHvi~~~   42 (79)
                      .+++++++++.+.+...++++++..  +..+|.|||+|+|...
T Consensus        66 ~~~~~~~~~~~~~~~~g~~l~~n~G~~agQ~V~HlHiHvI~g~  108 (119)
T PRK10687         66 ITVAAKIAEQEGIAEDGYRLIMNTNRHGGQEVYHIHMHLLGGR  108 (119)
T ss_pred             HHHHHHHHHHhCCCCCceEEEEeCCCcCCcccCEEEEEECCCc
Confidence            3556666665655556899999976  5789999999999843

>cd00468 HIT_like HIT family: HIT (Histidine triad) proteins, named for a motif related to the sequence HxHxH/Qxx (x, a hydrophobic amino acid), are a superfamily of nucleotide hydrolases and transferases, which act on the alpha-phosphate of ribonucleotides

Probab=96.95  E-value=0.001  Score=39.89  Aligned_cols=23  Identities=30%  Similarity=0.319  Sum_probs=17.0

Q ss_pred             Ccceeee--ecCCCCCCcceeeeee
Q 034900           17 NQYRFGF--HQPPLNSVNHLHLHCL   39 (79)
Q Consensus        17 ~~~r~Gf--H~pPf~Sv~HLHlHvi   39 (79)
                      ..+++.+  +.++..|+.|+|+|+|
T Consensus        61 ~~~~~~~n~g~~~g~~v~H~H~hii   85 (86)
T cd00468          61 PSLTVFVNDGAAAGQSVPHVHLHVL   85 (86)
T ss_pred             CceEEEEcCCccCCCcCCEEEEEeC
Confidence            3455555  4566789999999997

On the basis of sequence, substrate specificity, structure, evolution and mechanism, HIT proteins are classified in the literacture into three major branches: the Hint branch, which consists of adenosine 5' -monophosphoramide hydrolases, the Fhit branch, that consists of diadenosine polyphosphate hydrolases, and the GalT branch consisting of specific nucloside monophosphate transferases. Further sequence analysis reveals several new closely related, yet uncharacterized subgroups.

>KOG2720 consensus Predicted hydrolase (HIT family) [General function prediction only]

Probab=96.12  E-value=0.0026  Score=50.79  Aligned_cols=34  Identities=32%  Similarity=0.572  Sum_probs=28.0

Q ss_pred             CCCCcceeeeecC-CCCCCcceeeeeeecCccccc
Q 034900           14 PQSNQYRFGFHQP-PLNSVNHLHLHCLALPFIPRW   47 (79)
Q Consensus        14 ~~~~~~r~GfH~p-Pf~Sv~HLHlHvi~~~~~s~~   47 (79)
                      .|.+.+|+||-.+ .|.||+|||+|++.+|+.++.
T Consensus       211 ~dd~~frlgyNSlga~AsVNHLHfha~y~p~d~~i  245 (431)
T KOG2720|consen  211 ADDPYFRLGYNSLGAFASVNHLHFHAYYLPMDFPI  245 (431)
T ss_pred             cCCchhheecccchhhhhhhhhhhhhhhccccCcc
Confidence            3446899999965 688999999999998876654

>KOG3969 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.00  E-value=0.017  Score=44.76  Aligned_cols=61  Identities=26%  Similarity=0.372  Sum_probs=43.5

Q ss_pred             HHHHHHHHhh-CCCCCcceeeeecCCCCCCcceeeeeeecCcc-cccceeeeccCCCccceecHHHHHHHhcc
Q 034900            3 NVGQELLQQD-APQSNQYRFGFHQPPLNSVNHLHLHCLALPFI-PRWKHVKYLSLGPLGGFIEAEKLLEKIKP   73 (79)
Q Consensus         3 ~vg~~~l~~~-~~~~~~~r~GfH~pPf~Sv~HLHlHvi~~~~~-s~~~~~ky~~~s~~~~F~~~d~vi~~L~~   73 (79)
                      +-+++++.++ |.+.+..|+=||.-|  |--|||+|++...+. ..        ++.-+-=+.-||||+.|+-
T Consensus       219 ~k~~~~i~~~y~v~~dqlrmf~HYqP--SyYHlHVHi~nik~~~~~--------~~~~~rAilLddVI~nL~~  281 (310)
T KOG3969|consen  219 NKSREAIPQRYGVDPDQLRMFFHYQP--SYYHLHVHIVNIKHDHAP--------GSGCGRAILLDDVIENLEL  281 (310)
T ss_pred             HHHHHHHHHHhCCCchhEEEEEEecC--ceEEEEEEEEeccCCCCC--------CccccceeeHHHHHHHhcc
Confidence            3455556555 788889999999999  999999999985443 11        1111223678999999985

>cd01277 HINT_subgroup HINT (histidine triad nucleotide-binding protein) subgroup: Members of this CD belong to the superfamily of histidine triad hydrolases that act on alpha-phosphate of ribonucleotides

Probab=95.86  E-value=0.015  Score=36.05  Aligned_cols=25  Identities=16%  Similarity=0.278  Sum_probs=20.3

Q ss_pred             CCCcceeeeecCCC--CCCcceeeeee
Q 034900           15 QSNQYRFGFHQPPL--NSVNHLHLHCL   39 (79)
Q Consensus        15 ~~~~~r~GfH~pPf--~Sv~HLHlHvi   39 (79)
                      +...+.+++|..|.  .++.|+|+|++
T Consensus        75 ~~~~~n~~~~~~~~~g~~~~H~HiHii  101 (103)
T cd01277          75 KADGLNILQNNGRAAGQVVFHVHVHVI  101 (103)
T ss_pred             CCCceEEEEeCCcccCcccCEEEEEEc
Confidence            34579999998764  67999999997

This subgroup includes members from all three forms of cellular life. Although the biochemical function has not been characterised for many of the members of this subgroup, the proteins from Yeast have been shown to be involved in secretion, peroxisome formation and gene expression.

>cd01275 FHIT FHIT (fragile histidine family): FHIT proteins, related to the HIT family carry a motif HxHxH/Qxx (x, is a hydrophobic amino acid), On the basis of sequence, substrate specificity, structure, evolution and mechanism, HIT proteins are classified into three branches: the Hint branch, which consists of adenosine 5' -monophosphoramide hydrolases, the Fhit branch, that consists of diadenosine polyphosphate hydrolases, and the GalT branch consisting of specific nucloside monophosphate transferases

Probab=94.88  E-value=0.044  Score=35.69  Aligned_cols=25  Identities=20%  Similarity=0.521  Sum_probs=21.1

Q ss_pred             CCcceeeeecCCC--CCCcceeeeeee
Q 034900           16 SNQYRFGFHQPPL--NSVNHLHLHCLA   40 (79)
Q Consensus        16 ~~~~r~GfH~pPf--~Sv~HLHlHvi~   40 (79)
                      ...+.+++|..|-  .++.|+|+|+|-
T Consensus        76 ~~~~n~~~~~g~~~gq~v~H~HiHiiP  102 (126)
T cd01275          76 PDGFNIGINDGKAGGGIVPHVHIHIVP  102 (126)
T ss_pred             CCceEEEEeCCcccCCCcCEEEEEEeC
Confidence            4579999999883  478999999996

Fhit plays a very important role in the development of tumours. Infact, Fhit deletions are among the earliest and most frequent genetic alterations in the development of tumours.

>PLN03103 GDP-L-galactose-hexose-1-phosphate guanyltransferase; Provisional

Probab=94.22  E-value=0.057  Score=43.24  Aligned_cols=37  Identities=19%  Similarity=0.404  Sum_probs=26.1

Q ss_pred             HHHHHHHHhhCCCCCcceeeeecCC-CCCCcceeeeeeec
Q 034900            3 NVGQELLQQDAPQSNQYRFGFHQPP-LNSVNHLHLHCLAL   41 (79)
Q Consensus         3 ~vg~~~l~~~~~~~~~~r~GfH~pP-f~Sv~HLHlHvi~~   41 (79)
                      +++.+++.+-+.  ..+|+||--+- |.||+|||+|+..+
T Consensus       205 ~la~~~a~~~~~--p~frvgYNSlGA~ASvNHLHFQa~yl  242 (403)
T PLN03103        205 LLALYMAAEANN--PYFRVGYNSLGAFATINHLHFQAYYL  242 (403)
T ss_pred             HHHHHHHHhcCC--CcEEEEecCCccccCcceeeeeeccc
Confidence            344444443332  46999999764 45999999999995

>PF01230 HIT: HIT domain; InterPro: IPR001310 The Histidine Triad (HIT) motif, His-x-His-x-His-x-x (x, a hydrophobic amino acid) was identified as being highly conserved in a variety of organisms []

Probab=94.11  E-value=0.1  Score=32.42  Aligned_cols=24  Identities=33%  Similarity=0.582  Sum_probs=16.6

Q ss_pred             CcceeeeecCC--CCCCcceeeeeee
Q 034900           17 NQYRFGFHQPP--LNSVNHLHLHCLA   40 (79)
Q Consensus        17 ~~~r~GfH~pP--f~Sv~HLHlHvi~   40 (79)
                      ..++++...-+  -++|.|||+|+|.
T Consensus        69 ~~~~~~~~~g~~~gq~v~HlH~HviP   94 (98)
T PF01230_consen   69 DGYNVIINNGPAAGQSVPHLHFHVIP   94 (98)
T ss_dssp             SEEEEEEEESGGGTSSSSS-EEEEEE
T ss_pred             ceeeccccchhhhcCccCEEEEEEec
Confidence            35777776433  3589999999996

Crystal structure of rabbit Hint, purified as an adenosine and AMP-binding protein, showed that proteins in the HIT superfamily are conserved as nucleotide-binding proteins and that Hint homologues, which are found in all forms of life, are structurally related to Fhit homologues and GalT-related enzymes, which have more restricted phylogenetic profiles []. Hint homologues including rabbit Hint and yeast Hnt1 hydrolyse adenosine 5' monophosphoramide substrates such as AMP-NH2 and AMP-lysine to AMP plus the amine product and function as positive regulators of Cdk7/Kin28 in vivo []. Fhit homologues are diadenosine polyphosphate hydrolases [] and function as tumour suppressors in human and mouse [] though the tumour suppressing function of Fhit does not depend on ApppA hydrolysis []. The third branch of the HIT superfamily, which includes GalT homologues, contains a related His-X-His-X-Gln motif and transfers nucleoside monophosphate moieties to phosphorylated second substrates rather than hydrolysing them [].; PDB: 3LB5_B 1EMS_A 1Y23_A 3ANO_B 1KPE_B 1KPC_A 4EQE_B 1KPA_A 1KPB_B 4EQG_B ....

>PRK13878 conjugal transfer relaxase TraI; Provisional

Probab=93.91  E-value=0.071  Score=45.52  Aligned_cols=66  Identities=12%  Similarity=0.124  Sum_probs=47.6

Q ss_pred             CHHHHHHHHHhhCCCCCcceeeeecCCCCCCcceeeeeeecCcccccceeeeccCCCccceecHHHHHHHhccC
Q 034900            1 MLNVGQELLQQDAPQSNQYRFGFHQPPLNSVNHLHLHCLALPFIPRWKHVKYLSLGPLGGFIEAEKLLEKIKPL   74 (79)
Q Consensus         1 M~~vg~~~l~~~~~~~~~~r~GfH~pPf~Sv~HLHlHvi~~~~~s~~~~~ky~~~s~~~~F~~~d~vi~~L~~~   74 (79)
                      |.+++++++++.|....++.+.-|.    ..+|+|+|++.--.. + ...+|..  ++..|.+..++..+|+.+
T Consensus        86 ~~~I~~~~~~~LG~~~hQ~Vva~H~----DTdh~HiHIviNrV~-p-~g~Ki~d--~~~~yr~L~kicreLE~e  151 (746)
T PRK13878         86 LRAIEERICAGLGYGEHQRVSAVHH----DTDNLHIHIAINKIH-P-TRHTIHE--PYYAYRTLAELCTKLERD  151 (746)
T ss_pred             HHHHHHHHHHHhCCCCceEEEEEEC----CCCCceeEEEEeeec-C-CCCeecC--chHHHHHHHHHHHHHHHH
Confidence            4678899998888766789999997    689999999983322 2 2334543  223566788888888754

>cd00608 GalT Galactose-1-phosphate uridyl transferase (GalT): This enzyme plays a key role in galactose metabolism by catalysing the transfer of a uridine 5'-phosphoryl group from UDP-galactose 1-phosphate

Probab=93.85  E-value=0.17  Score=38.39  Aligned_cols=54  Identities=20%  Similarity=0.321  Sum_probs=32.6

Q ss_pred             CcceeeeecCCCC------CCcceeeeeeecCcccccceeeeccCCCc--cc---eecHHHHHHHhcc
Q 034900           17 NQYRFGFHQPPLN------SVNHLHLHCLALPFIPRWKHVKYLSLGPL--GG---FIEAEKLLEKIKP   73 (79)
Q Consensus        17 ~~~r~GfH~pPf~------Sv~HLHlHvi~~~~~s~~~~~ky~~~s~~--~~---F~~~d~vi~~L~~   73 (79)
                      ..+.+|+|..|.+      ++.|+|+|++-  ..+. .+++|....-+  +.   -.+.|++.++|++
T Consensus       264 ~pyn~~~h~~P~~~~~~~~~~~H~Hihi~P--r~~~-~~~~~~aGfE~~~g~~in~~~PE~aA~~LR~  328 (329)
T cd00608         264 FPYSMGWHQAPTGGKELENWYYHWHFEIPP--RRSA-TVLKFMAGFELGAGEFINDVTPEQAAARLRE  328 (329)
T ss_pred             CCeEEEEeccCCCCCcCCcceEEEEEEeCC--CcCC-CceeeeEEeeccCCCccCCCCHHHHHHHHhc
Confidence            4799999999976      55677777764  2221 12344321000  11   3678888888875

The structure of E.coli GalT reveals that the enzyme contains two identical subunits. It also demonstrates that the active site is formed by amino acid residues from both subunits of the dimer.

>PRK11720 galactose-1-phosphate uridylyltransferase; Provisional

Probab=93.43  E-value=0.18  Score=39.09  Aligned_cols=57  Identities=21%  Similarity=0.348  Sum_probs=35.8

Q ss_pred             CcceeeeecCCCC----CCcceeeeeeecCcccccceeeeccCCCc-cce---ecHHHHHHHhccC
Q 034900           17 NQYRFGFHQPPLN----SVNHLHLHCLALPFIPRWKHVKYLSLGPL-GGF---IEAEKLLEKIKPL   74 (79)
Q Consensus        17 ~~~r~GfH~pPf~----Sv~HLHlHvi~~~~~s~~~~~ky~~~s~~-~~F---~~~d~vi~~L~~~   74 (79)
                      ..+.+|+|..|.+    ++.|+|+|++-.=.++. .+.||....-+ +.|   .+.|++-++|++-
T Consensus       274 ~pyn~~~h~~p~~~~~~~~~H~HihiiPrl~Rs~-~~~k~~aGfE~~g~~in~~~PE~aA~~LR~~  338 (346)
T PRK11720        274 FPYSMGWHGAPFNGEENDHWQLHAHFYPPLLRSA-TVRKFMVGYEMLAETQRDLTAEQAAERLRAV  338 (346)
T ss_pred             CCCceeEEecccCCCCCeeEEEEEEEeCCccCcc-ccccceeeeecccCccCCCCHHHHHHHHhhc
Confidence            3599999999964    46889999875212222 13444331111 223   6889999999874

>TIGR00209 galT_1 galactose-1-phosphate uridylyltransferase, family 1

Probab=90.09  E-value=0.83  Score=35.44  Aligned_cols=57  Identities=26%  Similarity=0.448  Sum_probs=33.7

Q ss_pred             CcceeeeecCCCCC--Ccc--eeeeeeecCcccccceeeeccCCCc-cce---ecHHHHHHHhccC
Q 034900           17 NQYRFGFHQPPLNS--VNH--LHLHCLALPFIPRWKHVKYLSLGPL-GGF---IEAEKLLEKIKPL   74 (79)
Q Consensus        17 ~~~r~GfH~pPf~S--v~H--LHlHvi~~~~~s~~~~~ky~~~s~~-~~F---~~~d~vi~~L~~~   74 (79)
                      ..+.+|+|..|.+.  .+|  +|+|++-.-.++. .+.||....-+ +.|   ++.|++-++|++-
T Consensus       274 ~pYn~~~h~~p~~~~~~~~~H~HihiiPrl~R~~-~~~k~~aGfE~~g~~in~~~PE~aA~~LR~~  338 (347)
T TIGR00209       274 FPYSMGWHGAPFNGEENQHWQLHAHFYPPLLRSA-TVRKFMVGYEMLGETQRDLTAEQAAERLRAL  338 (347)
T ss_pred             CCcceeEEecccCCCCCcEEEEEEEEeCCccccc-ccccceeehhhhcCccCCCCHHHHHHHHHhc
Confidence            36999999999764  355  6666654212222 13444332111 334   6788888888865

This enzyme is involved in glucose and galactose interconversion. This model describes one of two extremely distantly related branches of the model pfam01087 from PFAM.

>PLN02643 ADP-glucose phosphorylase

Probab=88.37  E-value=1.9  Score=33.23  Aligned_cols=54  Identities=13%  Similarity=0.263  Sum_probs=33.0

Q ss_pred             CcceeeeecCCCC----CCcceeeeeeecCcccccceeeeccCCCccce---ecHHHHHHHhccC
Q 034900           17 NQYRFGFHQPPLN----SVNHLHLHCLALPFIPRWKHVKYLSLGPLGGF---IEAEKLLEKIKPL   74 (79)
Q Consensus        17 ~~~r~GfH~pPf~----Sv~HLHlHvi~~~~~s~~~~~ky~~~s~~~~F---~~~d~vi~~L~~~   74 (79)
                      ..+.+|+|..|..    .+.|.|+|+--.|-......+--.+    +.|   ++.|++-++|++-
T Consensus       272 ~pyN~~~~~~P~~~~~~~~~~~H~hihi~PRl~~~aGfElg~----g~~in~~~PE~aA~~LR~~  332 (336)
T PLN02643        272 PPYNYMIQTSPLGVEESNLPYTHWFLQIVPQLSGVGGFELGT----GCYINPVFPEDAAKVLREV  332 (336)
T ss_pred             CCceeeeecCCCccccCcccceEEEEEEecCcCCccceeccC----CCeeCCCCHHHHHHHHHhC
Confidence            4799999999973    3567776554444332222222222    223   6889999999874

>PF03432 Relaxase: Relaxase/Mobilisation nuclease domain ; InterPro: IPR005094 Relaxases/mobilisation proteins are required for the horizontal transfer of genetic information contained on plasmids that occurs during bacterial conjugation

Probab=87.84  E-value=0.86  Score=31.88  Aligned_cols=38  Identities=21%  Similarity=0.385  Sum_probs=31.5

Q ss_pred             CHHHHHHHHHhhCCCCCcceeeeecCCCCCCcceeeeeeecC
Q 034900            1 MLNVGQELLQQDAPQSNQYRFGFHQPPLNSVNHLHLHCLALP   42 (79)
Q Consensus         1 M~~vg~~~l~~~~~~~~~~r~GfH~pPf~Sv~HLHlHvi~~~   42 (79)
                      |.+++++++++.+.+..++.++-|.-    -+|+|+|++.-.
T Consensus        74 ~~~~~~~~~~~~~~~~~~~v~~~H~D----~~h~H~Hivin~  111 (242)
T PF03432_consen   74 AHEIAREFAEEMGPGNHQYVVVVHTD----TDHPHVHIVINR  111 (242)
T ss_pred             HHHHHHHHHHHcCCCCcceEEEECCC----cCeeeeeEEEee
Confidence            46788999998887667899999985    799999999943

The relaxase, in conjunction with several auxiliary proteins, forms the relaxation complex or relaxosome. Relaxases nick duplex DNA in a specific manner by catalysing trans-esterification [].

>KOG3275 consensus Zinc-binding protein of the histidine triad (HIT) family [Signal transduction mechanisms]

Probab=86.47  E-value=0.3  Score=33.74  Aligned_cols=38  Identities=29%  Similarity=0.397  Sum_probs=21.7

Q ss_pred             HHHHHHHhhCCCCCccee----eeecCCCCCCcceeeeeeecCcc
Q 034900            4 VGQELLQQDAPQSNQYRF----GFHQPPLNSVNHLHLHCLALPFI   44 (79)
Q Consensus         4 vg~~~l~~~~~~~~~~r~----GfH~pPf~Sv~HLHlHvi~~~~~   44 (79)
                      +++++.++.|.+. .||+    |=..  --||.|+|+|||.--.+
T Consensus        81 ~~k~vak~~Gl~~-gYrvv~NnG~~g--~QsV~HvH~HvlgGrqm  122 (127)
T KOG3275|consen   81 VAKKVAKALGLED-GYRVVQNNGKDG--HQSVYHVHLHVLGGRQM  122 (127)
T ss_pred             HHHHHHHHhCccc-ceeEEEcCCccc--ceEEEEEEEEEeCCccc
Confidence            4566666555432 1333    2211  33999999999983333

>COG5075 Uncharacterized conserved protein [Function unknown]

Probab=85.03  E-value=1.7  Score=33.70  Aligned_cols=50  Identities=28%  Similarity=0.381  Sum_probs=36.2

Q ss_pred             CCCCCcceeeeecCCCCCCcceeeeeee--cCcccccceeeeccCCCccceecHHHHHHHhcc
Q 034900           13 APQSNQYRFGFHQPPLNSVNHLHLHCLA--LPFIPRWKHVKYLSLGPLGGFIEAEKLLEKIKP   73 (79)
Q Consensus        13 ~~~~~~~r~GfH~pPf~Sv~HLHlHvi~--~~~~s~~~~~ky~~~s~~~~F~~~d~vi~~L~~   73 (79)
                      +.+.++.|+=+|.-|  |--|||+|+.-  .|--..         .--+-=+.-+|||+.|+-
T Consensus       225 ~vd~n~l~mfvHY~P--sYyhlHvHI~nIkh~~g~~---------~a~graIlL~DVI~~Lr~  276 (305)
T COG5075         225 GVDPNELRMFVHYQP--SYYHLHVHIVNIKHPHGGN---------VACGRAILLEDVIENLRI  276 (305)
T ss_pred             CcChhHeEEEEEecc--ceEEEEEEEEeecccCCCC---------cccceeeEHHHHHHHhcc
Confidence            466788999999999  99999999987  332110         000234788999999986

>COG0537 Hit Diadenosine tetraphosphate (Ap4A) hydrolase and other HIT family hydrolases [Nucleotide transport and metabolism / Carbohydrate transport and metabolism / General function prediction only]

Probab=84.48  E-value=0.48  Score=32.03  Aligned_cols=12  Identities=42%  Similarity=0.778  Sum_probs=10.8

Q ss_pred             CCCcceeeeeee
Q 034900           29 NSVNHLHLHCLA   40 (79)
Q Consensus        29 ~Sv~HLHlHvi~   40 (79)
                      -.|.|||+|+|.
T Consensus        92 q~V~HlH~HvIP  103 (138)
T COG0537          92 QEVFHLHIHIIP  103 (138)
T ss_pred             cCcceEEEEEcC
Confidence            379999999998

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	79
3sp4_A	204	Aprataxin-like protein; HIT domain, zinc finger, D	5e-05

>3sp4_A Aprataxin-like protein; HIT domain, zinc finger, DNA-binding protein, DNA deadenylas hydrolase; 1.80A {Schizosaccharomyces pombe} PDB: 3spd_A* 3spl_A* 3szq_A* Length = 204

 Score = 38.5 bits (89), Expect = 5e-05
 Identities = 16/69 (23%), Positives = 30/69 (43%), Gaps = 3/69 (4%)

Query: 12  DAPQSNQYRFGFHQPPLNSVNHLHLHCLALPFI-PRWKHVKYLSLGPLGGFIEAEKLLEK 70
           +    N  + GFH  P  S+N+LHLH + L  + P  K+  +        F++ +     
Sbjct: 98  NEALCNYIKVGFHAGP--SMNNLHLHIMTLDHVSPSLKNSAHYISFTSPFFVKIDTPTSN 155

Query: 71  IKPLSSTSS 79
           +    + +S
Sbjct: 156 LPTRGTLTS 164

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	79
3sp4_A	204	Aprataxin-like protein; HIT domain, zinc finger, D	99.55
3bl9_A	301	Scavenger mRNA-decapping enzyme DCPS; ligand compl	99.48
1vlr_A	350	MRNA decapping enzyme; 16740816, structural genomi	99.45
4egu_A	119	Histidine triad (HIT) protein; structural genomics	98.0
3n1s_A	119	HIT-like protein HINT; histidine triad nucleotide	97.8
1xqu_A	147	HIT family hydrolase; protein STRU initiative, PSI	97.79
3o1c_A	126	Histidine triad nucleotide-binding protein 1; hydr	97.6
3r6f_A	135	HIT family protein; structural genomics, seattle s	97.54
3oj7_A	117	Putative histidine triad family protein; hydrolase	97.53
1fit_A	147	FragIle histidine protein; FHIT, fragIle histidine	97.24
3o0m_A	149	HIT family protein; ssgcid, NIH, niaid, SBRI, UW,	97.05
3ksv_A	149	Uncharacterized protein; HIT family, structural ge	97.04
1gup_A	348	Galactose-1-phosphate uridylyltransferase; nucleot	96.97
2eo4_A	149	150AA long hypothetical histidine triad nucleotid	96.92
3ano_A	218	AP-4-A phosphorylase; diadenosine polyphosphate, H	96.87
1y23_A	145	HIT, histidine triad protein; HIT protein, PKCI-1,	96.58
3l7x_A	173	SMU.412C, putative HIT-like protein involved in ce	96.44
3lb5_A	161	HIT-like protein involved in cell-cycle regulatio;	96.42
1ems_A	440	Nitfhit, NIT-fragIle histidine triad fusion protei	96.37
1z84_A	351	Galactose-1-phosphate uridyl transferase-like prot	96.33
3imi_A	147	HIT family protein; structural genomics, infectiou	95.95
3p0t_A	138	Uncharacterized protein; ssgcid, HIT-like protein,	95.66
2oik_A	154	Histidine triad (HIT) protein; HIT-like fold, stru	94.42
3ohe_A	137	Histidine triad (HIT) protein; structural genomics	93.56
3nrd_A	135	Histidine triad (HIT) protein; structural genomics	93.18
3i24_A	149	HIT family hydrolase; structural genomics, PSI-2,	91.68
3i4s_A	149	Histidine triad protein; hydrolase, phosphatase, H	89.27

>3sp4_A Aprataxin-like protein; HIT domain, zinc finger, DNA-binding protein, DNA deadenylas hydrolase; 1.80A {Schizosaccharomyces pombe} PDB: 3spd_A* 3spl_A* 3szq_A*

Probab=99.55  E-value=3.9e-16  Score=112.28  Aligned_cols=46  Identities=26%  Similarity=0.395  Sum_probs=44.4

Q ss_pred             cceeeeecCCCCCCcceeeeeeecCcccccceeeeccCCCc-cceecHH
Q 034900           18 QYRFGFHQPPLNSVNHLHLHCLALPFIPRWKHVKYLSLGPL-GGFIEAE   65 (79)
Q Consensus        18 ~~r~GfH~pPf~Sv~HLHlHvi~~~~~s~~~~~ky~~~s~~-~~F~~~d   65 (79)
                      .+++|||++|  ||.|||||||++||.|.++|.|.++|||. ++|++.+
T Consensus       104 ~i~~GfHa~P--Sm~HLHLHVIS~Df~s~~lK~kkH~NSF~T~fFv~~~  150 (204)
T 3sp4_A          104 YIKVGFHAGP--SMNNLHLHIMTLDHVSPSLKNSAHYISFTSPFFVKID  150 (204)
T ss_dssp             TEEEEEESSC--SSSSCCEEEEESCCCCTTCCSHHHHHHHHSTTEEETT
T ss_pred             eEeccCCCCC--cccceeEEEeccCCCChhhCccchhcccChhhhccch
Confidence            7899999999  99999999999999999999999999998 8999998

>3bl9_A Scavenger mRNA-decapping enzyme DCPS; ligand complex, cytoplasm, hydrolase, nonsense-mediated mRNA decay, nucleus, polymorphism, structural genomics; HET: DD2; 1.80A {Homo sapiens} SCOP: d.13.1.3 d.246.1.1 PDB: 3bl7_A* 3bla_A*

Probab=99.48  E-value=2.5e-14  Score=107.91  Aligned_cols=66  Identities=27%  Similarity=0.379  Sum_probs=56.2

Q ss_pred             CHHHHHHHHHhh-CCCCCcceeeeecCCCCCCcceeeeeeecCcccccceeeeccCCCccceecHHHHHHHhccCCC
Q 034900            1 MLNVGQELLQQD-APQSNQYRFGFHQPPLNSVNHLHLHCLALPFIPRWKHVKYLSLGPLGGFIEAEKLLEKIKPLSS   76 (79)
Q Consensus         1 M~~vg~~~l~~~-~~~~~~~r~GfH~pPf~Sv~HLHlHvi~~~~~s~~~~~ky~~~s~~~~F~~~d~vi~~L~~~g~   76 (79)
                      |.++|++++++. +.+..++|+|||+||  |+.|||||+++.+|.+.+.+.+.      +.|.  |+||++|+..|+
T Consensus       208 M~~~~~~~i~~~y~~~~~~~rlgfHy~P--S~yHLHlHvis~~~~s~~~~~~k------A~lL--ddVI~~Le~~g~  274 (301)
T 3bl9_A          208 ILHQGQEAILQRYRMKGDHLRVYLHYLP--SYYHLHVHFTALGFEAPGSGVER------AHLL--AEVIENLECDPR  274 (301)
T ss_dssp             HHHHHHHHHHHHHCCCGGGEEEEEESSC--SSSSCEEEEEETTSCCTTCBTTT------EEEH--HHHHHHHHHCTT
T ss_pred             HHHHHHHHHHHhcCCChHHeEEEecCCC--CcceEEEEEEecCCCCCccccce------eeeH--HHHHHHHHhCCc
Confidence            678999999987 777789999999999  99999999999999887765433      3455  999999998775

>1vlr_A MRNA decapping enzyme; 16740816, structural genomics, JCSG, protein structure initiative, PSI, joint center for structural genomics; 1.83A {Mus musculus} SCOP: d.13.1.3 d.246.1.1 PDB: 1xmm_B* 1xml_B 1st0_B* 1st4_B*

Probab=99.45  E-value=5.5e-14  Score=107.95  Aligned_cols=66  Identities=26%  Similarity=0.368  Sum_probs=56.1

Q ss_pred             CHHHHHHHHHhh-CCCCCcceeeeecCCCCCCcceeeeeeecCcccccceeeeccCCCccceecHHHHHHHhccCCC
Q 034900            1 MLNVGQELLQQD-APQSNQYRFGFHQPPLNSVNHLHLHCLALPFIPRWKHVKYLSLGPLGGFIEAEKLLEKIKPLSS   76 (79)
Q Consensus         1 M~~vg~~~l~~~-~~~~~~~r~GfH~pPf~Sv~HLHlHvi~~~~~s~~~~~ky~~~s~~~~F~~~d~vi~~L~~~g~   76 (79)
                      |.++|++++++. +.+..++|+|||+||  |+.|||||+|+.+|.+.+.+.+.      ++|.  |+||++|+..|+
T Consensus       255 M~~~~~~ii~~~yg~~~~~lRlgfHy~P--S~yHLHlHvis~~~~s~~l~~~K------A~lL--ddVI~nLe~~g~  321 (350)
T 1vlr_A          255 ILREGQEAILKRYQVTGDRLRVYLHYLP--SYYHLHVHFTALGFEAPGSGVER------AHLL--AQVIENLECDPK  321 (350)
T ss_dssp             HHHHHHHHHHHHHCCCGGGEEEEEESSC--SSSSCEEEEEETTSCCTTCBTTT------EEEH--HHHHHHHHHCTT
T ss_pred             HHHHHHHHHHHhcCCChHHeEEEecCCC--CcceEEEEEEeccCCCCccccCe------eeeH--HHHHHHHHhCCC
Confidence            678999999987 777789999999999  99999999999999887765433      3455  999999998774

>4egu_A Histidine triad (HIT) protein; structural genomics, center for structural genomics of infec diseases, csgid, HIT domain, unknown function; HET: 5GP; 0.95A {Clostridium difficile}

Probab=98.00  E-value=2.5e-06  Score=54.27  Aligned_cols=46  Identities=22%  Similarity=0.268  Sum_probs=33.6

Q ss_pred             HHHHHHHHhhCCCCCcceeeeecCC--CCCCcceeeeeeecCcccccc
Q 034900            3 NVGQELLQQDAPQSNQYRFGFHQPP--LNSVNHLHLHCLALPFIPRWK   48 (79)
Q Consensus         3 ~vg~~~l~~~~~~~~~~r~GfH~pP--f~Sv~HLHlHvi~~~~~s~~~   48 (79)
                      +++++++++.+.+...+++|+|..|  -.||.|||+|+|....++++.
T Consensus        68 ~~~~~~~~~~~~~~~~~ni~~n~g~~agq~v~HlH~Hiip~~~~~~~~  115 (119)
T 4egu_A           68 VVINKIAKEKGFDQTGFRVINNCGSDGGQEVKHLHYHILAGKKLPNYE  115 (119)
T ss_dssp             HHHHHHHHHHTHHHHCEEEEEEETTTTTCCSCSCCEEEEESSCCCCGG
T ss_pred             HHHHHHHHHhCCCCCCEEEEEeCCCCCCCCcCEEEEEEeCCcccCccC
Confidence            4566766665433346999999887  468999999999976665543

>3n1s_A HIT-like protein HINT; histidine triad nucleotide binding protein, GMP, hydro; HET: 5GP; 1.45A {Escherichia coli} SCOP: d.13.1.0 PDB: 3n1t_A*

Probab=97.80  E-value=1.7e-05  Score=50.94  Aligned_cols=43  Identities=21%  Similarity=0.356  Sum_probs=33.3

Q ss_pred             HHHHHHHHHhhCCCCCcceeeeecCC--CCCCcceeeeeeecCcc
Q 034900            2 LNVGQELLQQDAPQSNQYRFGFHQPP--LNSVNHLHLHCLALPFI   44 (79)
Q Consensus         2 ~~vg~~~l~~~~~~~~~~r~GfH~pP--f~Sv~HLHlHvi~~~~~   44 (79)
                      .+++++++++.+.+.+.+++|++..|  -.+|.|||+|+|....+
T Consensus        66 ~~~~~~v~~~~~~~~~g~ni~~n~g~~agq~V~HlH~Hiipr~~~  110 (119)
T 3n1s_A           66 ITVAAKIAEQEGIAEDGYRLIMNTNRHGGQEVYHIHMHLLGGRPL  110 (119)
T ss_dssp             HHHHHHHHHHTTCTTTCEEEEEEEHHHHTCCSSSCCEEEEESSCC
T ss_pred             HHHHHHHHHHhCCCCCCeEEEEeCCCCcCCCcCEEEEEEeCCccc
Confidence            35677888776666678999999865  67999999999974433

>1xqu_A HIT family hydrolase; protein STRU initiative, PSI, southeast collaboratory for structural GEN secsg; 2.30A {Clostridium thermocellum} SCOP: d.13.1.1

Probab=97.79  E-value=2.8e-05  Score=52.13  Aligned_cols=40  Identities=20%  Similarity=0.197  Sum_probs=32.2

Q ss_pred             HHHHHHHHHhhCCCCCcceeeeecCCC--CCCcceeeeeeec
Q 034900            2 LNVGQELLQQDAPQSNQYRFGFHQPPL--NSVNHLHLHCLAL   41 (79)
Q Consensus         2 ~~vg~~~l~~~~~~~~~~r~GfH~pPf--~Sv~HLHlHvi~~   41 (79)
                      .+++++++++.+.+...+++|+|..|+  .+|.|||+|+|..
T Consensus        98 ~~~~~~v~~~~~~~~~gyni~~n~g~~aGq~v~HlHlHiiP~  139 (147)
T 1xqu_A           98 HKAANKVAEDLGIAEKGYRLITNCGVAAGQTVFHLHYHLLGG  139 (147)
T ss_dssp             HHHHHHHHHHTTCTTTCEEEECCCSTTTTCCSCSCCEEEEES
T ss_pred             HHHHHHHHHHhCCCCCCEEEEEecCcccCCCccEEEEEEeCC
Confidence            356777777766444579999999998  7899999999963

>3o1c_A Histidine triad nucleotide-binding protein 1; hydrolase, HINT protein, HIT protein, adenosine 5'- monophosphoramidase; HET: ADN; 1.08A {Oryctolagus cuniculus} SCOP: d.13.1.1 PDB: 3llj_A* 1rzy_A* 3qgz_A* 3o1z_A 3o1x_A* 4eqe_A* 4eqg_A* 4eqh_A* 3tw2_A* 1kpb_A 1kpf_A* 1kpa_A 1kpc_A 1av5_A* 1kpe_A* 4rhn_A* 3rhn_A* 5rhn_A* 6rhn_A

Probab=97.60  E-value=3.3e-05  Score=49.87  Aligned_cols=40  Identities=28%  Similarity=0.346  Sum_probs=30.9

Q ss_pred             HHHHHHHHHhhCCCCCcceeeeecCCC--CCCcceeeeeeecC
Q 034900            2 LNVGQELLQQDAPQSNQYRFGFHQPPL--NSVNHLHLHCLALP   42 (79)
Q Consensus         2 ~~vg~~~l~~~~~~~~~~r~GfH~pPf--~Sv~HLHlHvi~~~   42 (79)
                      .+++++++++.+. ...+++|++..|.  .+|.|||+|+|...
T Consensus        78 ~~~~~~~~~~~~~-~~g~ni~~n~g~~agq~v~HlH~Hiipr~  119 (126)
T 3o1c_A           78 MIVGKKCAADLGL-KKGYRMVVNEGSDGGQSVYHVHLHVLGGR  119 (126)
T ss_dssp             HHHHHHHHHHTTC-TTCEEEECCCHHHHTCCSSSCCEEEEESS
T ss_pred             HHHHHHHHHHhCC-CCCeEEEEecCCccCCccCEeEEEEeCCc
Confidence            3567777776653 2479999998885  79999999999743

>3r6f_A HIT family protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid, protozoan parasite; 1.85A {Encephalitozoon cuniculi}

Probab=97.54  E-value=0.00013  Score=47.60  Aligned_cols=36  Identities=19%  Similarity=0.278  Sum_probs=28.3

Q ss_pred             HHHHHHHHhhCCCCCcceeeeecCCCCCCcceeeeeee
Q 034900            3 NVGQELLQQDAPQSNQYRFGFHQPPLNSVNHLHLHCLA   40 (79)
Q Consensus         3 ~vg~~~l~~~~~~~~~~r~GfH~pPf~Sv~HLHlHvi~   40 (79)
                      ++++++.+..+.  ..+++|+|..|.++|.|||+|+|-
T Consensus        65 ~~~~~v~~~~~~--~~~ni~~n~g~gq~v~HlH~HiiP  100 (135)
T 3r6f_A           65 DTIRHLVQKFGF--ERYNILQNNGNHQEVFHVHFHVIP  100 (135)
T ss_dssp             HHHHHHHHHHTC--CSEEEECCSSSSCSSSSCCEEEEE
T ss_pred             HHHHHHHHHhCC--CCeEEEEEcCCCCCccEEEEEEec
Confidence            455666555544  359999998889999999999996

>3oj7_A Putative histidine triad family protein; hydrolase, structural genomics, seattle structural genomics for infectious disease, ssgcid; 1.40A {Entamoeba histolytica} SCOP: d.13.1.0 PDB: 3omf_A* 3oxk_A*

Probab=97.53  E-value=8.7e-05  Score=47.00  Aligned_cols=40  Identities=18%  Similarity=0.131  Sum_probs=29.2

Q ss_pred             HHHHHHHHhhCCCCCcceeeeecCCC--CCCcceeeeeeecCcc
Q 034900            3 NVGQELLQQDAPQSNQYRFGFHQPPL--NSVNHLHLHCLALPFI   44 (79)
Q Consensus         3 ~vg~~~l~~~~~~~~~~r~GfH~pPf--~Sv~HLHlHvi~~~~~   44 (79)
                      +++++++++ +.+ +.+++|+|..|.  .||.|||+|+|....+
T Consensus        71 ~~~~~~~~~-~~~-~g~ni~~n~g~~agq~v~H~H~Hiipr~~~  112 (117)
T 3oj7_A           71 YKVSLIGKK-ECP-EGYRVVNNIGEDAGQTVKHIHFHILGGKKL  112 (117)
T ss_dssp             HHHHHHHHH-HCT-TCEEEECCCSTTTTCCSSSCCEEEEESSCC
T ss_pred             HHHHHHHHh-cCC-CCeEEEEcCCCCCCeeeeEEEEEEeCCCCC
Confidence            456666665 333 379999998774  7899999999984433

>1fit_A FragIle histidine protein; FHIT, fragIle histidine triad protein, putative human tumor suppressor, advanced photon source, APS; HET: FRU; 1.85A {Homo sapiens} SCOP: d.13.1.1 PDB: 1fhi_A* 2fit_A* 3fit_A* 4fit_A 5fit_A* 6fit_A* 2fhi_A*

Probab=97.24  E-value=0.00021  Score=46.87  Aligned_cols=25  Identities=28%  Similarity=0.612  Sum_probs=22.1

Q ss_pred             CCcceeeeecCC--CCCCcceeeeeee
Q 034900           16 SNQYRFGFHQPP--LNSVNHLHLHCLA   40 (79)
Q Consensus        16 ~~~~r~GfH~pP--f~Sv~HLHlHvi~   40 (79)
                      ...+++|+|..|  .++|.|||+|+|.
T Consensus        75 ~~~~ni~~n~g~~agq~v~HlH~HiiP  101 (147)
T 1fit_A           75 GTSLTFSMQDGPEAGQTVKHVHVHVLP  101 (147)
T ss_dssp             CSEEEEEECCSGGGTCCSSSCCEEEEE
T ss_pred             CCCEEEEEecCCccCCCccEEEEEEEC
Confidence            347999999987  5799999999998

>3o0m_A HIT family protein; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, hydrola structural genomics; HET: AMP; 1.90A {Mycobacterium smegmatis str}

Probab=97.05  E-value=0.0011  Score=43.79  Aligned_cols=27  Identities=19%  Similarity=0.420  Sum_probs=22.8

Q ss_pred             CCCCcceeeeecCC--CCCCcceeeeeee
Q 034900           14 PQSNQYRFGFHQPP--LNSVNHLHLHCLA   40 (79)
Q Consensus        14 ~~~~~~r~GfH~pP--f~Sv~HLHlHvi~   40 (79)
                      .+...+++|+|..|  -++|.|||+|+|.
T Consensus        80 ~~~~~~ni~~n~g~~aGq~v~HlHiHiiP  108 (149)
T 3o0m_A           80 LHADGNNIAINDGKAAFQTVFHIHLHVVP  108 (149)
T ss_dssp             TCCSEEEEECCCSGGGTCCSSSCCEEEEE
T ss_pred             CCCCceEEEEecCCCCCCccceEEEEEEC
Confidence            44567999999876  4789999999998

>3ksv_A Uncharacterized protein; HIT family, structural genomics, structural genomics of PATH protozoa consortium, SGPP, unknown function; 1.90A {Leishmania major} SCOP: d.13.1.0

Probab=97.04  E-value=0.001  Score=44.23  Aligned_cols=38  Identities=18%  Similarity=0.176  Sum_probs=27.0

Q ss_pred             HHHHHHHHhh--CCCCCcceeeeecCC--CCCCcceeeeeee
Q 034900            3 NVGQELLQQD--APQSNQYRFGFHQPP--LNSVNHLHLHCLA   40 (79)
Q Consensus         3 ~vg~~~l~~~--~~~~~~~r~GfH~pP--f~Sv~HLHlHvi~   40 (79)
                      ++++++.+..  ..+...+++|++..|  -.+|.|||+|+|-
T Consensus        72 ~~~~~v~~~l~~~~~~~g~ni~~n~g~~aGq~v~HlHiHiiP  113 (149)
T 3ksv_A           72 VLLAKASRAVAGPDGSMQYNVLQNNGSLAHQEVPHVHFHIIP  113 (149)
T ss_dssp             HHHHHHHHHHHCTTSCCEEEEEECCSTTTTCCSSSCCEEEEE
T ss_pred             HHHHHHHHHHHHhhCCCCEEEEEecCcccCCCCCEEEEEEEe
Confidence            3445544443  233457999999888  4789999999996

>1gup_A Galactose-1-phosphate uridylyltransferase; nucleotidyltransferase, galactose metabolism; HET: GDU; 1.80A {Escherichia coli} SCOP: d.13.1.2 d.13.1.2 PDB: 1guq_A* 1hxq_A* 1hxp_A*

Probab=96.97  E-value=0.0019  Score=48.18  Aligned_cols=57  Identities=25%  Similarity=0.430  Sum_probs=35.8

Q ss_pred             cceeeeecCCCC----CCcceeeeeeecCcccccceeeeccCCCc--cc--eecHHHHHHHhccCC
Q 034900           18 QYRFGFHQPPLN----SVNHLHLHCLALPFIPRWKHVKYLSLGPL--GG--FIEAEKLLEKIKPLS   75 (79)
Q Consensus        18 ~~r~GfH~pPf~----Sv~HLHlHvi~~~~~s~~~~~ky~~~s~~--~~--F~~~d~vi~~L~~~g   75 (79)
                      .|++|||..|++    ++.|||+|+|. |.+..-...+|.....+  +.  -.+.|++.++|++..
T Consensus       275 ~Yn~g~~~~p~~g~~q~v~HlHiHiiP-pl~R~~~~~~~~~g~e~~~~~~~~~~pE~~A~~Lr~~~  339 (348)
T 1gup_A          275 PYSMGWHGAPFNGEENQHWQLHAHFYP-PLLRSATVRKFMVGYEMLAETQRDLTAEQAAERLRAVS  339 (348)
T ss_dssp             CEEEEEECCCSSSSCCTTCCCEEEEEC-CBCSSSSCBCCCCTHHHHTCCEESSCHHHHHHHHHTSC
T ss_pred             CeEEEEEeCCCCCCCCcccEEEEEEec-chhccCCcccceeeEecccCCCCCCCHHHHHHHHHhhh
Confidence            799999999995    79999999997 21111111233321000  11  146889999998654

>2eo4_A 150AA long hypothetical histidine triad nucleotid protein; HIT family, structural genomics, NPPSFA; 1.80A {Sulfolobus tokodaii}

Probab=96.92  E-value=0.00051  Score=45.06  Aligned_cols=25  Identities=20%  Similarity=0.303  Sum_probs=21.4

Q ss_pred             CCcceeeeecCCC--CCCcceeeeeee
Q 034900           16 SNQYRFGFHQPPL--NSVNHLHLHCLA   40 (79)
Q Consensus        16 ~~~~r~GfH~pPf--~Sv~HLHlHvi~   40 (79)
                      ...+++|+|..|.  ++|.|||+|+|.
T Consensus        75 ~~~~ni~~n~g~~~gq~v~HlHiHviP  101 (149)
T 2eo4_A           75 ADGLRLLTNIGRSAGQVIFHLHVHIIP  101 (149)
T ss_dssp             CSEEEEECCCSGGGTCCSCSCCEEEEE
T ss_pred             CCCeEEEEecCcCCCCCcCEEEEEEEC
Confidence            3579999998774  789999999995

>3ano_A AP-4-A phosphorylase; diadenosine polyphosphate, HIT transferase; HET: PG4; 1.89A {Mycobacterium tuberculosis}

Probab=96.87  E-value=0.0012  Score=47.10  Aligned_cols=35  Identities=17%  Similarity=0.430  Sum_probs=26.0

Q ss_pred             HHHHHHhhCCCCCcceeeeecCCC--CCC-cceeeeeee
Q 034900            5 GQELLQQDAPQSNQYRFGFHQPPL--NSV-NHLHLHCLA   40 (79)
Q Consensus         5 g~~~l~~~~~~~~~~r~GfH~pPf--~Sv-~HLHlHvi~   40 (79)
                      +.++|++... ...+++|++..|.  .+| .|||+|+|.
T Consensus       136 v~~~l~~~~~-~~g~ni~~n~G~~aGq~V~~HlHiHIIP  173 (218)
T 3ano_A          136 AIRVIKNVSR-PHGFNVGLNLGTSAGGSLAEHLHVHVVP  173 (218)
T ss_dssp             HHHHHHHHCC-CSEEEEEEEESGGGTCTTTTSCCEEEEE
T ss_pred             HHHHHHHhcC-CCCEEEEEecCcccCCcccCEEEEEEEc
Confidence            3444555432 3479999998876  588 999999998

>1y23_A HIT, histidine triad protein; HIT protein, PKCI-1, cell-cycle regulation, NYSGXRC, structural genomics, protein structure initiative; 2.30A {Bacillus subtilis} SCOP: d.13.1.1

Probab=96.58  E-value=0.0011  Score=43.00  Aligned_cols=24  Identities=21%  Similarity=0.116  Sum_probs=20.7

Q ss_pred             CcceeeeecCC--CCCCcceeeeeee
Q 034900           17 NQYRFGFHQPP--LNSVNHLHLHCLA   40 (79)
Q Consensus        17 ~~~r~GfH~pP--f~Sv~HLHlHvi~   40 (79)
                      ..+++|+|..|  .++|.|||+|+|.
T Consensus        82 ~~~ni~~n~g~~~g~~v~HlH~HiiP  107 (145)
T 1y23_A           82 IGLNTLNNNGEKAGQSVFHYHMHIIP  107 (145)
T ss_dssp             SEEEEEEEESGGGTCCSSSCCEEEEE
T ss_pred             CCEEEEEcCCcCCCCCcCEEEEEEEc
Confidence            47999999766  4789999999996

>3l7x_A SMU.412C, putative HIT-like protein involved in cell-cycle regulation; 1.70A {Streptococcus mutans}

Probab=96.44  E-value=0.0037  Score=42.71  Aligned_cols=25  Identities=16%  Similarity=0.232  Sum_probs=21.7

Q ss_pred             CCcceeeeecCCC--CCCcceeeeeee
Q 034900           16 SNQYRFGFHQPPL--NSVNHLHLHCLA   40 (79)
Q Consensus        16 ~~~~r~GfH~pPf--~Sv~HLHlHvi~   40 (79)
                      ...+++|++..|.  .+|.|||+|+|-
T Consensus       112 ~~g~ni~~n~g~~aGq~V~HlHiHiIP  138 (173)
T 3l7x_A          112 ADGLNIINNNEETAGQTVFHAHVHLVP  138 (173)
T ss_dssp             CSEEEEEECCSGGGTCCSCSCCEEEEE
T ss_pred             CCCEEEEEecCcccCCCcCEEEEEEEe
Confidence            3579999998885  789999999997

>3lb5_A HIT-like protein involved in cell-cycle regulatio; niaid, seattle structural genomics center for infectious DIS ssgcid, histidine triad; 1.90A {Bartonella henselae}

Probab=96.42  E-value=0.0016  Score=43.83  Aligned_cols=25  Identities=20%  Similarity=0.332  Sum_probs=21.4

Q ss_pred             CCcceeeeecCCC--CCCcceeeeeee
Q 034900           16 SNQYRFGFHQPPL--NSVNHLHLHCLA   40 (79)
Q Consensus        16 ~~~~r~GfH~pPf--~Sv~HLHlHvi~   40 (79)
                      ...+++|++..|.  ++|.|||+|+|-
T Consensus       104 ~~g~ni~~n~g~~aGq~V~HlHiHiiP  130 (161)
T 3lb5_A          104 ADGITVMQFNEAASQQTVYHLHFHIIP  130 (161)
T ss_dssp             CSEEEEEEEESGGGTCCSCSCCEEEEE
T ss_pred             CCCEEEEEecCcccCCCCCEEEEEEEc
Confidence            3579999998774  789999999996

>1ems_A Nitfhit, NIT-fragIle histidine triad fusion protein; WORM, nitrilase, nucleotide-binding protein, cancer; 2.80A {Caenorhabditis elegans} SCOP: d.13.1.1 d.160.1.1

Probab=96.37  E-value=0.002  Score=48.33  Aligned_cols=25  Identities=20%  Similarity=0.304  Sum_probs=22.0

Q ss_pred             CCcceeeeecCC--CCCCcceeeeeee
Q 034900           16 SNQYRFGFHQPP--LNSVNHLHLHCLA   40 (79)
Q Consensus        16 ~~~~r~GfH~pP--f~Sv~HLHlHvi~   40 (79)
                      ...+++|+|..|  .++|.|||+|+|.
T Consensus       371 ~~~~n~~~~~g~~~gq~v~HlH~Hiip  397 (440)
T 1ems_A          371 VTSTTICVQDGKDAGQTVPHVHIHILP  397 (440)
T ss_dssp             CSEEEEECCCSGGGTCCSSSCCEEEEE
T ss_pred             CCCeEEEEecCCCCCCCccEEEEEEeC
Confidence            357999999988  4789999999998

>1z84_A Galactose-1-phosphate uridyl transferase-like protein; GALT, zinc, AMP, structural genomics, protein structure initiative, CESG; HET: AMP; 1.83A {Arabidopsis thaliana} SCOP: d.13.1.2 d.13.1.2 PDB: 1zwj_A 2q4h_A* 2q4l_A 2h39_A*

Probab=96.33  E-value=0.0037  Score=46.84  Aligned_cols=54  Identities=17%  Similarity=0.300  Sum_probs=35.0

Q ss_pred             CcceeeeecCCCC------CCcceeeeeeecCcccccceeeeccCCCccce---ecHHHHHHHhccCCC
Q 034900           17 NQYRFGFHQPPLN------SVNHLHLHCLALPFIPRWKHVKYLSLGPLGGF---IEAEKLLEKIKPLSS   76 (79)
Q Consensus        17 ~~~r~GfH~pPf~------Sv~HLHlHvi~~~~~s~~~~~ky~~~s~~~~F---~~~d~vi~~L~~~g~   76 (79)
                      ..+++|+|..|+.      ++.|||+|++. .+. ....  |...  .+.+   .+.|++.++|++...
T Consensus       288 ~~yn~~~n~gp~~g~~~~q~v~HlHiHiiP-R~~-~~~G--fe~~--~~~~i~~~~pE~~A~~LR~~~~  350 (351)
T 1z84_A          288 PPYNYMIHTSPLKVTESQLPYTHWFLQIVP-QLS-GVGG--FEIG--TGCYINPVFPEDVAKVMREVSL  350 (351)
T ss_dssp             CCEEEEEECCCTTCCGGGGGGCCCEEEEEE-CCC-CCCH--HHHH--HSCCEESSCHHHHHHHHHHCCC
T ss_pred             CCEEEEEeCCCccCCCCCCccceEEEEEEc-cCC-CcCc--cccc--cCcccCCccHHHHHHHHHhccC
Confidence            3799999999986      78899999997 110 0000  1100  0122   578999999987543

>3imi_A HIT family protein; structural genomics, infectious diseases for structural genomics of infectious diseases, unknown FUN csgid; 2.01A {Bacillus anthracis str} SCOP: d.13.1.1

Probab=95.95  E-value=0.0059  Score=40.03  Aligned_cols=25  Identities=20%  Similarity=0.307  Sum_probs=21.3

Q ss_pred             CCcceeeeecCCC--CCCcceeeeeee
Q 034900           16 SNQYRFGFHQPPL--NSVNHLHLHCLA   40 (79)
Q Consensus        16 ~~~~r~GfH~pPf--~Sv~HLHlHvi~   40 (79)
                      ...+++|+|..|.  .+|.|||+|+|-
T Consensus        85 ~~~~ni~~n~g~~aGq~v~HlHiHiiP  111 (147)
T 3imi_A           85 PVGFNLLNNNGEKAGQTVFHFHLHLIP  111 (147)
T ss_dssp             CSEEEEEEEESGGGTCCSSSCCEEEEE
T ss_pred             CCCEEEEEeCCcccCCCcCEEEEEEeC
Confidence            3579999998774  689999999997

>3p0t_A Uncharacterized protein; ssgcid, HIT-like protein, mycobacerium paratuberculosis, STR genomics; 1.90A {Mycobacterium avium subsp}

Probab=95.66  E-value=0.0044  Score=40.00  Aligned_cols=20  Identities=35%  Similarity=0.469  Sum_probs=15.8

Q ss_pred             eeeeecCCCCCCcceeeeeee
Q 034900           20 RFGFHQPPLNSVNHLHLHCLA   40 (79)
Q Consensus        20 r~GfH~pPf~Sv~HLHlHvi~   40 (79)
                      ++||.. .-++|.|||+|+|.
T Consensus        83 ~~n~~~-~gq~v~HlH~HiiP  102 (138)
T 3p0t_A           83 RSGLII-AGLEVPHLHVHVFP  102 (138)
T ss_dssp             EEEEEE-CCSSCSSCCEEEEE
T ss_pred             CCcEEE-CCcccCEEEEEEec
Confidence            566654 45799999999997

>2oik_A Histidine triad (HIT) protein; HIT-like fold, structural genomics, joint center for structu genomics, JCSG; HET: MSE; 1.65A {Methylobacillus flagellatus} SCOP: d.13.1.1

Probab=94.42  E-value=0.033  Score=36.47  Aligned_cols=20  Identities=20%  Similarity=0.351  Sum_probs=15.9

Q ss_pred             cceeeeecCCCCCCcceeeeeee
Q 034900           18 QYRFGFHQPPLNSVNHLHLHCLA   40 (79)
Q Consensus        18 ~~r~GfH~pPf~Sv~HLHlHvi~   40 (79)
                      .++++   +.-++|.|||+|+|.
T Consensus        84 g~ni~---~~gq~v~HlHiHiiP  103 (154)
T 2oik_A           84 KINLA---SLGNMTPHVHWHVIP  103 (154)
T ss_dssp             EEEEE---ECCSSSCSCEEEEEE
T ss_pred             cEEhH---HhCCCCCEEEEEEeC
Confidence            46665   455799999999998

>3ohe_A Histidine triad (HIT) protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-biology; HET: MSE; 1.20A {Marinobacter aquaeolei}

Probab=93.56  E-value=0.053  Score=35.49  Aligned_cols=32  Identities=19%  Similarity=0.303  Sum_probs=21.3

Q ss_pred             HHHHHHHhhCCCCCcceeeeecCCCCCCcceeeeeee
Q 034900            4 VGQELLQQDAPQSNQYRFGFHQPPLNSVNHLHLHCLA   40 (79)
Q Consensus         4 vg~~~l~~~~~~~~~~r~GfH~pPf~Sv~HLHlHvi~   40 (79)
                      +++.+.+..+.  +.+.+|   ---++|.|||+|+|.
T Consensus        65 v~~~l~~~~~~--~~~N~~---~aGq~V~HlH~HviP   96 (137)
T 3ohe_A           65 LSEGMMELFGG--DKMNVA---ALGNMVPQLHLHHIV   96 (137)
T ss_dssp             HHHHHHHHTTC--SEEEEE---ECCSSCCSCCEEEEE
T ss_pred             HHHHHHHHhCC--CeEEEe---eccCcCCEEEEEEeC
Confidence            44443333344  357777   445789999999998

>3nrd_A Histidine triad (HIT) protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 2.06A {Sinorhizobium meliloti}

Probab=93.18  E-value=0.068  Score=34.80  Aligned_cols=32  Identities=28%  Similarity=0.426  Sum_probs=20.9

Q ss_pred             HHHHHHHhhCCCCCcceeeeecCCCCCCcceeeeeee
Q 034900            4 VGQELLQQDAPQSNQYRFGFHQPPLNSVNHLHLHCLA   40 (79)
Q Consensus         4 vg~~~l~~~~~~~~~~r~GfH~pPf~Sv~HLHlHvi~   40 (79)
                      +++.+.+..+++  .+.+|   .--++|.|||+|+|.
T Consensus        67 v~~~l~~~~~~~--~~N~~---~aGq~V~HlH~HviP   98 (135)
T 3nrd_A           67 VAAGLKKATGAE--KINIG---ALGNIVRQLHVHVIA   98 (135)
T ss_dssp             HHHHHHHHHTCS--EEEEE---ECCSSCCSCCEEEEE
T ss_pred             HHHHHHHhcCCC--eEEEe---eccCCCCEEEEEEec
Confidence            444443334443  46666   345789999999998

>3i24_A HIT family hydrolase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 1.50A {Vibrio fischeri ES114}

Probab=91.68  E-value=0.14  Score=34.16  Aligned_cols=33  Identities=33%  Similarity=0.423  Sum_probs=21.7

Q ss_pred             HHHHHHHHhhCCCCCcceeeeecCCCCCCcceeeeeee
Q 034900            3 NVGQELLQQDAPQSNQYRFGFHQPPLNSVNHLHLHCLA   40 (79)
Q Consensus         3 ~vg~~~l~~~~~~~~~~r~GfH~pPf~Sv~HLHlHvi~   40 (79)
                      .+++.+.+..+++  .+.+|   .--++|.|||+|+|.
T Consensus        64 ~va~al~~~~~~~--~~Ni~---~aGq~V~HlH~HvIP   96 (149)
T 3i24_A           64 AVAQLLEDNFSPD--KINIG---ALGNLVPQLHIHHIA   96 (149)
T ss_dssp             HHHHHHHHHHCCS--EEEEE---ECCSSCCSCCEEEEE
T ss_pred             HHHHHHHHhhCCC--eEEEh---hhhCCCCEEEEEEeC
Confidence            3444444444543  46677   255799999999998

>3i4s_A Histidine triad protein; hydrolase, phosphatase, HIT superfamily, PSI-2, NYSGXRC, STR genomics, protein structure initiative; 1.75A {Bradyrhizobium japonicum}

Probab=89.27  E-value=0.29  Score=32.56  Aligned_cols=20  Identities=30%  Similarity=0.404  Sum_probs=15.2

Q ss_pred             cceeeeecCCCCCCcceeeeeee
Q 034900           18 QYRFGFHQPPLNSVNHLHLHCLA   40 (79)
Q Consensus        18 ~~r~GfH~pPf~Sv~HLHlHvi~   40 (79)
                      .+.+|   ---++|.|||+|+|.
T Consensus        82 g~N~~---~aGq~V~HlH~HvIP  101 (149)
T 3i4s_A           82 KLNIA---ALGNLVPQLHVHIIA  101 (149)
T ss_dssp             EEEEE---ECCSSCCSCCEEEEE
T ss_pred             eEEEe---ecCCcCCEEEEEEEC
Confidence            35555   344689999999998

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	79
d1vlra1	192	d.13.1.3 (A:146-337) mRNA decapping enzyme DcpS C-	3e-07

>d1vlra1 d.13.1.3 (A:146-337) mRNA decapping enzyme DcpS C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 192

class: Alpha and beta proteins (a+b)
fold: HIT-like
superfamily: HIT-like
family: mRNA decapping enzyme DcpS C-terminal domain
domain: mRNA decapping enzyme DcpS C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 43.2 bits (102), Expect = 3e-07
 Identities = 15/44 (34%), Positives = 22/44 (50%), Gaps = 3/44 (6%)

Query: 1   MLNVGQELL-QQDAPQSNQYRFGFHQPPLNSVNHLHLHCLALPF 43
           +L  GQE + ++     ++ R   H  P  S  HLH+H  AL F
Sbjct: 98  ILREGQEAILKRYQVTGDRLRVYLHYLP--SYYHLHVHFTALGF 139

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	79
d1vlra1	192	mRNA decapping enzyme DcpS C-terminal domain {Mous	99.33
d1xqua_	113	Putative hydrolase {Clostridium thermocellum [TaxI	97.86
d1kpfa_	111	Protein kinase C inhibitor-1, PKCI-1 {Human (Homo	97.1
d1y23a_	139	Hit {Bacillus subtilis [TaxId: 1423]}	96.78
d1guqa2	171	Galactose-1-phosphate uridylyltransferase {Escheri	96.68
d1fita_	146	FHIT (fragile histidine triad protein) {Human (Hom	96.52
d1emsa1	160	NIT-FHIT fusion protein, C-terminal domain {Nemato	95.73
d1z84a2	156	Galactose-1-phosphate uridylyltransferase {Thale c	93.87
d2oika1	139	Histidine triad protein Mfla2506 {Methylobacillus	90.63

>d1vlra1 d.13.1.3 (A:146-337) mRNA decapping enzyme DcpS C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: HIT-like
superfamily: HIT-like
family: mRNA decapping enzyme DcpS C-terminal domain
domain: mRNA decapping enzyme DcpS C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.33  E-value=6.2e-13  Score=93.35  Aligned_cols=65  Identities=25%  Similarity=0.286  Sum_probs=52.4

Q ss_pred             CHHHHHHHHHhh-CCCCCcceeeeecCCCCCCcceeeeeeecCcccccceeeeccCCCccceecHHHHHHHhccCC
Q 034900            1 MLNVGQELLQQD-APQSNQYRFGFHQPPLNSVNHLHLHCLALPFIPRWKHVKYLSLGPLGGFIEAEKLLEKIKPLS   75 (79)
Q Consensus         1 M~~vg~~~l~~~-~~~~~~~r~GfH~pPf~Sv~HLHlHvi~~~~~s~~~~~ky~~~s~~~~F~~~d~vi~~L~~~g   75 (79)
                      |.++|++++.++ +.+.+++|+|||.||  ||.|||||+++.++.++...    +..  +  ..-||||+.||..+
T Consensus        98 m~~~~~~~i~~~~gi~~~~~Rig~H~~P--Sv~HLHlHvi~~~~~~~g~~----~~r--a--~lL~dvI~nLe~~~  163 (192)
T d1vlra1          98 ILREGQEAILKRYQVTGDRLRVYLHYLP--SYYHLHVHFTALGFEAPGSG----VER--A--HLLAQVIENLECDP  163 (192)
T ss_dssp             HHHHHHHHHHHHHCCCGGGEEEEEESSC--SSSSCEEEEEETTSCCTTCB----TTT--E--EEHHHHHHHHHHCT
T ss_pred             HHHHHHHHHHHHhCCChhheEEEEECCC--CEeeeEEEEEeccCCCCccc----cce--e--eeHHHHHHHHhcCc
Confidence            578899988776 777789999999999  99999999999999876432    211  1  46789999998654

>d1xqua_ d.13.1.1 (A:) Putative hydrolase {Clostridium thermocellum [TaxId: 1515]}

class: Alpha and beta proteins (a+b)
fold: HIT-like
superfamily: HIT-like
family: HIT (HINT, histidine triad) family of protein kinase-interacting proteins
domain: Putative hydrolase
species: Clostridium thermocellum [TaxId: 1515]

Probab=97.86  E-value=7.7e-06  Score=50.46  Aligned_cols=39  Identities=21%  Similarity=0.246  Sum_probs=30.4

Q ss_pred             HHHHHHHHHhhCCCCCcceeeeec--CCCCCCcceeeeeee
Q 034900            2 LNVGQELLQQDAPQSNQYRFGFHQ--PPLNSVNHLHLHCLA   40 (79)
Q Consensus         2 ~~vg~~~l~~~~~~~~~~r~GfH~--pPf~Sv~HLHlHvi~   40 (79)
                      .+.+.+++++.+.+...++++++.  +++.||+|||+|+|.
T Consensus        65 ~~~~~~~~~~~~~~~~g~~~~~~~g~~agq~v~HlH~Hvip  105 (113)
T d1xqua_          65 HKAANKVAEDLGIAEKGYRLITNCGVAAGQTVFHLHYHLLG  105 (113)
T ss_dssp             HHHHHHHHHHTTCTTTCEEEECCCSTTTTCCSCSCCEEEEE
T ss_pred             HHHHHHHHHhhccCCCceEEEEeCccccccccCeeEEEEeC
Confidence            345666777666555678888875  669999999999998

>d1kpfa_ d.13.1.1 (A:) Protein kinase C inhibitor-1, PKCI-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: HIT-like
superfamily: HIT-like
family: HIT (HINT, histidine triad) family of protein kinase-interacting proteins
domain: Protein kinase C inhibitor-1, PKCI-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.10  E-value=0.0001  Score=45.36  Aligned_cols=38  Identities=29%  Similarity=0.389  Sum_probs=27.5

Q ss_pred             HHHHHHHHHhhCCCCCcceeeee--cCCCCCCcceeeeeee
Q 034900            2 LNVGQELLQQDAPQSNQYRFGFH--QPPLNSVNHLHLHCLA   40 (79)
Q Consensus         2 ~~vg~~~l~~~~~~~~~~r~GfH--~pPf~Sv~HLHlHvi~   40 (79)
                      .+++++++++.+.. +.++++..  ..++.||.|||+|+|-
T Consensus        63 ~~~~~~~~~~~~~~-~g~~i~~n~g~~agq~V~HlH~Hiip  102 (111)
T d1kpfa_          63 MIVGKKCAADLGLN-KGYRMVVNEGSDGGQSVYHVHLHVLG  102 (111)
T ss_dssp             HHHHHHHHHHTTCT-TCEEEECCCHHHHTCCSSSCCEEEEE
T ss_pred             HHHHHHHHHHhCCC-CCEEEEEeCCccCCcccceeEEEEeC
Confidence            45667777766432 35677765  5678999999999996

>d1y23a_ d.13.1.1 (A:) Hit {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a+b)
fold: HIT-like
superfamily: HIT-like
family: HIT (HINT, histidine triad) family of protein kinase-interacting proteins
domain: Hit
species: Bacillus subtilis [TaxId: 1423]

Probab=96.78  E-value=0.00049  Score=42.87  Aligned_cols=24  Identities=21%  Similarity=0.141  Sum_probs=19.8

Q ss_pred             Ccceeeeec--CCCCCCcceeeeeee
Q 034900           17 NQYRFGFHQ--PPLNSVNHLHLHCLA   40 (79)
Q Consensus        17 ~~~r~GfH~--pPf~Sv~HLHlHvi~   40 (79)
                      ..++++++.  ....+|.|||+|+|-
T Consensus        78 ~g~~i~~n~g~~agq~v~H~H~HviP  103 (139)
T d1y23a_          78 IGLNTLNNNGEKAGQSVFHYHMHIIP  103 (139)
T ss_dssp             SEEEEEEEESGGGTCCSSSCCEEEEE
T ss_pred             CCcEEEeCCCccccEecCEEEEEEEc
Confidence            468999984  457899999999984

>d1guqa2 d.13.1.2 (A:178-348) Galactose-1-phosphate uridylyltransferase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: HIT-like
superfamily: HIT-like
family: Hexose-1-phosphate uridylyltransferase
domain: Galactose-1-phosphate uridylyltransferase
species: Escherichia coli [TaxId: 562]

Probab=96.68  E-value=0.00095  Score=42.85  Aligned_cols=57  Identities=23%  Similarity=0.375  Sum_probs=33.1

Q ss_pred             CcceeeeecCCCC----CCcceeeeeeecCcccccceeeeccCCC--ccc--eecHHHHHHHhccC
Q 034900           17 NQYRFGFHQPPLN----SVNHLHLHCLALPFIPRWKHVKYLSLGP--LGG--FIEAEKLLEKIKPL   74 (79)
Q Consensus        17 ~~~r~GfH~pPf~----Sv~HLHlHvi~~~~~s~~~~~ky~~~s~--~~~--F~~~d~vi~~L~~~   74 (79)
                      ..+.+++|.+|+.    ++-|+|+|++- +......+.+|.....  .++  -.+.|++-++|++-
T Consensus        97 ~~y~~~~~~~p~~~~~~~~~H~Hihi~P-r~~r~~~~~~~~~g~E~~~~~~~~~~pE~~A~~LR~~  161 (171)
T d1guqa2          97 FPYSMGWHGAPFNGEENQHWQLHAHFYP-PLLRSATVRKFMVGYEMLAETQRDLTAEQAAERLRAV  161 (171)
T ss_dssp             CCEEEEEECCCSSSSCCTTCCCEEEEEC-CEEEETTEECCCCHHHHHTCCEESSCHHHHHHHHHTS
T ss_pred             cchhhhhhcCccccCCCceeEEEEEEcc-CccCCCCccccceeeeecccccCCCCHHHHHHHHHhh
Confidence            4699999999984    34566666654 3322222334432100  012  25778999999873

>d1fita_ d.13.1.1 (A:) FHIT (fragile histidine triad protein) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: HIT-like
superfamily: HIT-like
family: HIT (HINT, histidine triad) family of protein kinase-interacting proteins
domain: FHIT (fragile histidine triad protein)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.52  E-value=0.001  Score=42.36  Aligned_cols=24  Identities=29%  Similarity=0.632  Sum_probs=20.2

Q ss_pred             CcceeeeecCC--CCCCcceeeeeee
Q 034900           17 NQYRFGFHQPP--LNSVNHLHLHCLA   40 (79)
Q Consensus        17 ~~~r~GfH~pP--f~Sv~HLHlHvi~   40 (79)
                      ..+.++++..|  ..+|.|||+|+|-
T Consensus        75 ~~~ni~~~~g~~agq~v~HlH~HiiP  100 (146)
T d1fita_          75 TSLTFSMQDGPEAGQTVKHVHVHVLP  100 (146)
T ss_dssp             SEEEEEECCSGGGTCCSSSCCEEEEE
T ss_pred             ceEEEEEccccccCCCCCEEEEEEec
Confidence            57999999765  5789999999985

>d1emsa1 d.13.1.1 (A:281-440) NIT-FHIT fusion protein, C-terminal domain {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: HIT-like
superfamily: HIT-like
family: HIT (HINT, histidine triad) family of protein kinase-interacting proteins
domain: NIT-FHIT fusion protein, C-terminal domain
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=95.73  E-value=0.003  Score=41.02  Aligned_cols=26  Identities=19%  Similarity=0.307  Sum_probs=21.0

Q ss_pred             CCCcceeeeecCCC--CCCcceeeeeee
Q 034900           15 QSNQYRFGFHQPPL--NSVNHLHLHCLA   40 (79)
Q Consensus        15 ~~~~~r~GfH~pPf--~Sv~HLHlHvi~   40 (79)
                      +...++++++..|.  .+|.|||+|+|-
T Consensus        90 ~~~g~ni~~n~G~~aGq~V~HlHiHIIP  117 (160)
T d1emsa1          90 NVTSTTICVQDGKDAGQTVPHVHIHILP  117 (160)
T ss_dssp             TCSEEEEECCCSGGGTCCSSSCCEEEEE
T ss_pred             ccceEEEecccCCCCCeEEeEEEEEEEC
Confidence            33579999997764  489999999995

>d1z84a2 d.13.1.2 (A:196-351) Galactose-1-phosphate uridylyltransferase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a+b)
fold: HIT-like
superfamily: HIT-like
family: Hexose-1-phosphate uridylyltransferase
domain: Galactose-1-phosphate uridylyltransferase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=93.87  E-value=0.026  Score=35.60  Aligned_cols=57  Identities=14%  Similarity=0.201  Sum_probs=34.7

Q ss_pred             CCCcceeeeecCCCCC------CcceeeeeeecCcccccceeeeccCCCccce--ecHHHHHHHhccCCC
Q 034900           15 QSNQYRFGFHQPPLNS------VNHLHLHCLALPFIPRWKHVKYLSLGPLGGF--IEAEKLLEKIKPLSS   76 (79)
Q Consensus        15 ~~~~~r~GfH~pPf~S------v~HLHlHvi~~~~~s~~~~~ky~~~s~~~~F--~~~d~vi~~L~~~g~   76 (79)
                      +...+.+|+|..|++.      +.|+|+|++- +. +....+--.++   .++  .+.|++.++|++-+-
T Consensus        91 ~~~~~n~~~~~~p~~~~~~~~~~~H~hi~~~P-r~-~~~aG~E~~tg---~~~n~~~PE~~A~~LR~~~~  155 (156)
T d1z84a2          91 NDPPYNYMIHTSPLKVTESQLPYTHWFLQIVP-QL-SGVGGFEIGTG---CYINPVFPEDVAKVMREVSL  155 (156)
T ss_dssp             TSCCEEEEEECCCTTCCGGGGGGCCCEEEEEE-CC-CCCCHHHHHHS---CCEESSCHHHHHHHHHHCCC
T ss_pred             CCCcccHhhhcCCCCCcccCceeEEEEEEecC-CC-Cccccceeecc---cccCCCCHHHHHHHHHhhhc
Confidence            3458999999999865      4588888875 21 11111100110   122  678999999987553

>d2oika1 d.13.1.1 (A:6-144) Histidine triad protein Mfla2506 {Methylobacillus flagellatus [TaxId: 405]}

class: Alpha and beta proteins (a+b)
fold: HIT-like
superfamily: HIT-like
family: HIT (HINT, histidine triad) family of protein kinase-interacting proteins
domain: Histidine triad protein Mfla2506
species: Methylobacillus flagellatus [TaxId: 405]

Probab=90.63  E-value=0.044  Score=33.80  Aligned_cols=12  Identities=33%  Similarity=0.659  Sum_probs=11.0

Q ss_pred             CCCcceeeeeee
Q 034900           29 NSVNHLHLHCLA   40 (79)
Q Consensus        29 ~Sv~HLHlHvi~   40 (79)
                      ++|.|||+|+|-
T Consensus        86 ~~v~HlH~HviP   97 (139)
T d2oika1          86 NMTPHVHWHVIP   97 (139)
T ss_dssp             SSSCSCEEEEEE
T ss_pred             CCCCeEEEEEec
Confidence            689999999997