Citrus Sinensis ID: 034901

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------8
Protein Sequence
MASSWRRTIGNLRSFVGNSMGGVRGGANLASWVVAGTLAYYLWVKPSQDLKREQEPLQLLIQIGTWKNENRFLIHRKRV
Secondary Structure (PSIPRED)
cccHHHHHHHcHHHHHHHHccccccccHHHHHHHHHHHHHHEEEcccHHHHHHHHHHHHHHHHccccccHHHHHHcccc
Secondary Structure Prediction (SSPRO)
ccccccccccccHHHHcccccccccHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHccccccccEEEEcccc
Coil and Loop (DISEMBL)
MASSWRRTIGNLRSFvgnsmggvrggANLASWVVAGTLAYYLwvkpsqdlkreQEPLQLLIQIGTWKNENRFLIHRKRV
Flexible Loop (DISEMBL)
masswrrtigNLRSFVGNSMGGVRGGANLASWVVAGTLAYYLWVKPSQDLKREQEPLQLLiqigtwknenrflihrkrv
Low Complexity Region (SEG)
MASSWRRTIGNLRSFVGNSMGGVRGGANLASWVVAGTLAYYLWVKPSQDLKREQEPLQLLIQIGTWKNENRFLIHRKRV
Disordered region (IsUnstruct)
*******TIGNLRSFVGNSMGGVRGGANLASWVVAGTLAYYLWVKPSQDLKREQEPLQLLIQIGTWKNENRFLI*****
Disordered Region (DISOPRED)
*********GNLRSFVGNSMGGVRGGANLASWVVAGTLAYYLWV********************TWKNENRFLI*RK**
Disordered Region (DISEMBL)
MASSWRRTIGNLRSFVGNSMGGVRGGANLASWVVAGTLAYYLWVKPSQDLKREQEPLQLLIQIGTWKNENRFLIHRKRV
Disordered Region (DISPRO)
*********GNLRSFVGNSMGGVRGGANLASWVVAGTLAYYLWVKPSQDLKREQEPLQLLIQIGTWKNENRFLIHR***
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MASSWRRTIGNLRSFVGNSMGGVRGGANLASWVVAGTLAYYLWVKPSQDLKREQEPLQLLIQIGTWKNENRFLIHRKRV
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	79
449438867	97	PREDICTED: uncharacterized protein LOC10	0.936	0.762	0.653	1e-21
388510170	100	unknown [Medicago truncatula]	0.962	0.76	0.658	4e-21
351725643	100	uncharacterized protein LOC100527639 [Gl	0.696	0.55	0.854	4e-21
357467189	130	hypothetical protein MTR_3g116150 [Medic	0.962	0.584	0.658	7e-21
30685765	193	uncharacterized protein [Arabidopsis tha	0.949	0.388	0.607	2e-20
110735721	148	hypothetical protein [Arabidopsis thalia	0.949	0.506	0.607	2e-20
224083370	96	predicted protein [Populus trichocarpa]	0.949	0.781	0.594	2e-20
225457662	97	PREDICTED: uncharacterized protein LOC10	0.696	0.567	0.818	2e-20
26452982	96	unknown protein [Arabidopsis thaliana]	0.949	0.781	0.607	4e-20
255539336	98	conserved hypothetical protein [Ricinus	0.683	0.551	0.796	9e-20

>gi|449438867|ref|XP_004137209.1| PREDICTED: uncharacterized protein LOC101205325 isoform 1 [Cucumis sativus] gi|449438869|ref|XP_004137210.1| PREDICTED: uncharacterized protein LOC101205325 isoform 2 [Cucumis sativus] gi|449438871|ref|XP_004137211.1| PREDICTED: uncharacterized protein LOC101205325 isoform 3 [Cucumis sativus] gi|449483208|ref|XP_004156522.1| PREDICTED: uncharacterized LOC101205325 isoform 1 [Cucumis sativus] gi|449483212|ref|XP_004156523.1| PREDICTED: uncharacterized LOC101205325 isoform 2 [Cucumis sativus] gi|449483215|ref|XP_004156524.1| PREDICTED: uncharacterized LOC101205325 isoform 3 [Cucumis sativus]

 Score =  107 bits (266), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 51/78 (65%), Positives = 64/78 (82%), Gaps = 4/78 (5%)

Query: 2  ASSWRRTIGNLRSFVGNSMGGVRGGANLASWVVAGTLAYYLWVKPSQDLKREQEPLQLLI 61
          +SSWRR++GN+RSF+GNSMGG+RGGANLASWVVAGTLAYYLWVKPSQDLKREQ+    L 
Sbjct: 3  SSSWRRSLGNVRSFIGNSMGGLRGGANLASWVVAGTLAYYLWVKPSQDLKREQQERAALA 62

Query: 62 QIGTWKNENRFLIHRKRV 79
           +    + +R++  RK +
Sbjct: 63 AV----DPHRYIEKRKPI 76

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388510170|gb|AFK43151.1| unknown [Medicago truncatula]

 Score =  105 bits (261), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 52/79 (65%), Positives = 61/79 (77%), Gaps = 3/79 (3%)

Query: 1  MASSWRRTIGNLRSFVGNSMGGVRGGANLASWVVAGTLAYYLWVKPSQDLKREQEPLQLL 60
          MAS+WRRT+GN RSFV NSMGG+RGG+NLASWVVAGTLAYYLW+KP QDLKREQ   Q  
Sbjct: 1  MASNWRRTLGNARSFVNNSMGGLRGGSNLASWVVAGTLAYYLWIKPDQDLKREQ---QAK 57

Query: 61 IQIGTWKNENRFLIHRKRV 79
            I +  +  R++  RK V
Sbjct: 58 AAIASHDDPFRYVETRKPV 76

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351725643|ref|NP_001235308.1| uncharacterized protein LOC100527639 [Glycine max] gi|255632830|gb|ACU16768.1| unknown [Glycine max]

 Score =  105 bits (261), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 47/55 (85%), Positives = 53/55 (96%)

Query: 1  MASSWRRTIGNLRSFVGNSMGGVRGGANLASWVVAGTLAYYLWVKPSQDLKREQE 55
          MASSWRRT GN+RSFV NSMGG+RGG+NLASWVVAGTLAY+LW+KPSQDLKREQ+
Sbjct: 1  MASSWRRTFGNMRSFVSNSMGGLRGGSNLASWVVAGTLAYFLWIKPSQDLKREQQ 55

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357467189|ref|XP_003603879.1| hypothetical protein MTR_3g116150 [Medicago truncatula] gi|355492927|gb|AES74130.1| hypothetical protein MTR_3g116150 [Medicago truncatula]

 Score =  104 bits (259), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 52/79 (65%), Positives = 61/79 (77%), Gaps = 3/79 (3%)

Query: 1  MASSWRRTIGNLRSFVGNSMGGVRGGANLASWVVAGTLAYYLWVKPSQDLKREQEPLQLL 60
          MAS+WRRT+GN RSFV NSMGG+RGG+NLASWVVAGTLAYYLW+KP QDLKREQ   Q  
Sbjct: 1  MASNWRRTLGNARSFVNNSMGGLRGGSNLASWVVAGTLAYYLWIKPDQDLKREQ---QAK 57

Query: 61 IQIGTWKNENRFLIHRKRV 79
            I +  +  R++  RK V
Sbjct: 58 AAIASHDDPFRYVETRKPV 76

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|30685765|ref|NP_850214.1| uncharacterized protein [Arabidopsis thaliana] gi|330253762|gb|AEC08856.1| uncharacterized protein [Arabidopsis thaliana]

 Score =  102 bits (255), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 48/79 (60%), Positives = 61/79 (77%), Gaps = 4/79 (5%)

Query: 1   MASSWRRTIGNLRSFVGNSMGGVRGGANLASWVVAGTLAYYLWVKPSQDLKREQEPLQLL 60
           MASSWRR+IGN+RSF+GNSMGG+RGG + ASWVVAGT+AY+LW+KP QDLK+EQE    L
Sbjct: 98  MASSWRRSIGNVRSFIGNSMGGLRGGQSAASWVVAGTIAYFLWIKPEQDLKKEQEARAAL 157

Query: 61  IQIGTWKNENRFLIHRKRV 79
               T    N+++  RK +
Sbjct: 158 AMADT----NQYVEKRKPI 172

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|110735721|dbj|BAE99840.1| hypothetical protein [Arabidopsis thaliana]

 Score =  102 bits (255), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 48/79 (60%), Positives = 61/79 (77%), Gaps = 4/79 (5%)

Query: 1   MASSWRRTIGNLRSFVGNSMGGVRGGANLASWVVAGTLAYYLWVKPSQDLKREQEPLQLL 60
           MASSWRR+IGN+RSF+GNSMGG+RGG + ASWVVAGT+AY+LW+KP QDLK+EQE    L
Sbjct: 53  MASSWRRSIGNVRSFIGNSMGGLRGGQSAASWVVAGTIAYFLWIKPEQDLKKEQEARAAL 112

Query: 61  IQIGTWKNENRFLIHRKRV 79
               T    N+++  RK +
Sbjct: 113 AMADT----NQYVEKRKPI 127

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224083370|ref|XP_002307000.1| predicted protein [Populus trichocarpa] gi|224148766|ref|XP_002336709.1| predicted protein [Populus trichocarpa] gi|222836564|gb|EEE74971.1| predicted protein [Populus trichocarpa] gi|222856449|gb|EEE93996.1| predicted protein [Populus trichocarpa]

 Score =  102 bits (255), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 47/79 (59%), Positives = 62/79 (78%), Gaps = 4/79 (5%)

Query: 1  MASSWRRTIGNLRSFVGNSMGGVRGGANLASWVVAGTLAYYLWVKPSQDLKREQEPLQLL 60
          M+S WRRT+GN+RSF+GNS+GG+RGG+N+ASW+VAGTLAYYLW+KPSQDLKR+QE    L
Sbjct: 1  MSSGWRRTVGNVRSFIGNSLGGLRGGSNVASWIVAGTLAYYLWIKPSQDLKRQQEERAAL 60

Query: 61 IQIGTWKNENRFLIHRKRV 79
               +    R++  RK +
Sbjct: 61 ASSDPY----RYIEKRKPI 75

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225457662|ref|XP_002275896.1| PREDICTED: uncharacterized protein LOC100259899 isoform 1 [Vitis vinifera] gi|297745609|emb|CBI40774.3| unnamed protein product [Vitis vinifera]

 Score =  102 bits (255), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 45/55 (81%), Positives = 54/55 (98%)

Query: 1  MASSWRRTIGNLRSFVGNSMGGVRGGANLASWVVAGTLAYYLWVKPSQDLKREQE 55
          MASSWRR++GN+RSF+GN MGG+RGG+NLASWVVAGTLAY+LWVKPSQ+L+REQE
Sbjct: 1  MASSWRRSLGNMRSFIGNCMGGLRGGSNLASWVVAGTLAYFLWVKPSQELRREQE 55

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|26452982|dbj|BAC43567.1| unknown protein [Arabidopsis thaliana]

 Score =  102 bits (253), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 48/79 (60%), Positives = 61/79 (77%), Gaps = 4/79 (5%)

Query: 1  MASSWRRTIGNLRSFVGNSMGGVRGGANLASWVVAGTLAYYLWVKPSQDLKREQEPLQLL 60
          MASSWRR+IGN+RSF+GNSMGG+RGG + ASWVVAGT+AY+LW+KP QDLK+EQE    L
Sbjct: 1  MASSWRRSIGNVRSFIGNSMGGLRGGQSAASWVVAGTIAYFLWIKPEQDLKKEQEARAAL 60

Query: 61 IQIGTWKNENRFLIHRKRV 79
              T    N+++  RK +
Sbjct: 61 AMADT----NQYVEKRKPI 75

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255539336|ref|XP_002510733.1| conserved hypothetical protein [Ricinus communis] gi|223551434|gb|EEF52920.1| conserved hypothetical protein [Ricinus communis]

 Score =  100 bits (250), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 43/54 (79%), Positives = 54/54 (100%)

Query: 2  ASSWRRTIGNLRSFVGNSMGGVRGGANLASWVVAGTLAYYLWVKPSQDLKREQE 55
          +S+WRRT+GN+RSF+GNSMGG+RGG+N+ASWVVAGTLAY+LW+KPSQDL+REQE
Sbjct: 3  SSNWRRTLGNVRSFIGNSMGGLRGGSNIASWVVAGTLAYFLWIKPSQDLRREQE 56

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	79
TAIR|locus:504956013	193	AT2G33585 "AT2G33585" [Arabido	0.949	0.388	0.607	1.1e-21

TAIR|locus:504956013 AT2G33585 "AT2G33585" [Arabidopsis thaliana (taxid:3702)]

 Score = 253 (94.1 bits), Expect = 1.1e-21, P = 1.1e-21
 Identities = 48/79 (60%), Positives = 61/79 (77%)

Query:     1 MASSWRRTIGNLRSFVGNSMGGVRGGANLASWVVAGTLAYYLWVKPSQDLKREQEPLQLL 60
             MASSWRR+IGN+RSF+GNSMGG+RGG + ASWVVAGT+AY+LW+KP QDLK+EQE    L
Sbjct:    98 MASSWRRSIGNVRSFIGNSMGGLRGGQSAASWVVAGTIAYFLWIKPEQDLKKEQEARAAL 157

Query:    61 IQIGTWKNENRFLIHRKRV 79
                 T    N+++  RK +
Sbjct:   158 AMADT----NQYVEKRKPI 172


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.321   0.135   0.429    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0       79        79   0.00091  102 3  11 22  0.39    29
                                                     29  0.39    30


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  558 (59 KB)
  Total size of DFA:  116 KB (2075 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  8.65u 0.09s 8.74t   Elapsed:  00:00:03
  Total cpu time:  8.65u 0.09s 8.74t   Elapsed:  00:00:03
  Start:  Fri May 10 03:23:11 2013   End:  Fri May 10 03:23:14 2013

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0005739 "mitochondrion" evidence=IDA

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Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	AT2G33585	unknown protein; unknown protein; FUNCTIONS IN- molecular_function unknown; INVOLVED IN- biological_process unknown; LOCATED IN- cellular_component unknown; Has 15 Blast hits to 15 proteins in 7 species- Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 15; Viruses - 0; Other Eukaryotes - 0 (source- NCBI BLink). (193 aa)
		(Arabidopsis thaliana)
Predicted Functional Partners:
	AT5G01970	unknown protein; unknown protein; EXPRESSED IN- 19 plant structures; EXPRESSED DURING- 10 growt [...] (351 aa)				•					0.617
	AT5G40240	nodulin MtN21 family protein; nodulin MtN21 family protein; FUNCTIONS IN- molecular_function un [...] (368 aa)				•					0.548
	AT4G33880	basic helix-loop-helix (bHLH) family protein; basic helix-loop-helix (bHLH) family protein; FUN [...] (352 aa)				•					0.548
	FMO_GS-OX5	FMO GS-OX5 (FLAVIN-MONOOXYGENASE GLUCOSINOLATE S-OXYGENASE 5); 8-methylthiopropyl glucosinolate [...] (459 aa)				•					0.548
	AT5G50610	unknown protein; unknown protein; FUNCTIONS IN- molecular_function unknown; INVOLVED IN- biolog [...] (185 aa)				•					0.548
	AT5G19510	elongation factor 1B alpha-subunit 2 (eEF1Balpha2); elongation factor 1B alpha-subunit 2 (eEF1B [...] (224 aa)				•					0.548
	AT5G18500	protein kinase family protein; protein kinase family protein; FUNCTIONS IN- protein serine/thre [...] (484 aa)				•					0.548
	AT5G12440	nucleic acid binding / nucleotide binding / zinc ion binding; nucleic acid binding / nucleotide [...] (650 aa)				•					0.548
	CESA5	CESA5 (CELLULOSE SYNTHASE 5); cellulose synthase/ transferase, transferring glycosyl groups; En [...] (1069 aa)				•					0.548
	AT4G33350	chloroplast inner membrane import protein Tic22, putative; chloroplast inner membrane import pr [...] (268 aa)				•					0.548

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	79
PF05057	217	DUF676: Putative serine esterase (DUF676); InterPr	82.23
PRK05886	109	yajC preprotein translocase subunit YajC; Validate	81.67

>PF05057 DUF676: Putative serine esterase (DUF676); InterPro: IPR007751 This domain, whose function is unknown, is found within a group of putative lipases

Probab=82.23  E-value=0.29  Score=34.42  Aligned_cols=12  Identities=50%  Similarity=1.060  Sum_probs=10.3

Q ss_pred             hhhhhcccccCC
Q 034901           14 SFVGNSMGGVRG   25 (79)
Q Consensus        14 sfi~nsmgG~RG   25 (79)
                      ||||.||||+--
T Consensus        81 sfIgHSLGGli~   92 (217)
T PF05057_consen   81 SFIGHSLGGLIA   92 (217)
T ss_pred             eEEEecccHHHH
Confidence            899999999743

>PRK05886 yajC preprotein translocase subunit YajC; Validated

Probab=81.67  E-value=0.71  Score=31.66  Aligned_cols=30  Identities=3%  Similarity=-0.021  Sum_probs=22.2

Q ss_pred             hhHHHHHHhhhhheeeEEcCchhhhhhchh
Q 034901           27 ANLASWVVAGTLAYYLWVKPSQDLKREQEP   56 (79)
Q Consensus        27 ~nlAaW~VAG~lAYylwvkPe~~~~~eqe~   56 (79)
                      ..+.-+++..++-|||.++|.|.+++|+++
T Consensus         5 ~~ll~lv~i~~i~yF~~iRPQkKr~K~~~~   34 (109)
T PRK05886          5 VLFLPFLLIMGGFMYFASRRQRKAMQATID   34 (109)
T ss_pred             HHHHHHHHHHHHHHHHHccHHHHHHHHHHH
Confidence            456667777888899999998766655543

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	79
2rdd_B	37	UPF0092 membrane protein YAJC; drug resistance, mu	86.74

>2rdd_B UPF0092 membrane protein YAJC; drug resistance, multidrug efflux, transporter, antiporter, novel transmembrane helix, ACRB, inner membrane; HET: AIC; 3.50A {Escherichia coli}

Probab=86.74  E-value=0.1  Score=28.42  Aligned_cols=30  Identities=23%  Similarity=0.482  Sum_probs=23.1

Q ss_pred             hhHHHHHHhhhhheeeEEcCchhhhhhchh
Q 034901           27 ANLASWVVAGTLAYYLWVKPSQDLKREQEP   56 (79)
Q Consensus        27 ~nlAaW~VAG~lAYylwvkPe~~~~~eqe~   56 (79)
                      .++.-.++..++-||+.++|.+.+++|+++
T Consensus         4 ~~~l~~v~~~~ifYFl~iRPQ~Kr~K~~~~   33 (37)
T 2rdd_B            4 SLILMLVVFGLIFYFMILRPQQKRTKEHKK   33 (37)
T ss_dssp             HHHHHHHHHHHHHHHHTHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence            456666777788899999998887777654

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00