Citrus Sinensis ID: 034905

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------8
Protein Sequence
MAADEIELKTAPADFRFPTTNQTRHCFTRYIEFHRCLAAKGEESNECERFAKYYRSLCPGDWIEKWNEQRENGTFPGPL
Secondary Structure (PSIPRED)
ccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHccHHHHHHHHHHHHHHccccccc
Secondary Structure Prediction (SSPRO)
ccccccEEccccccccccccEcHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHcccHHHHHHHHHHHHcccccccc
Coil and Loop (DISEMBL)
maadeielktapadfrfpttnqtrhCFTRYIEFHRClaakgeesnECERFAKYYRSLCPGDWIEKWNeqrengtfpgpl
Flexible Loop (DISEMBL)
maadeielktapadfrfpttnqTRHCFTRYIEFHRCLAAKGEESNECERFAKYYRSLCPGDWIEKWNEqrengtfpgpl
Low Complexity Region (SEG)
MAADEIELKTAPADFRFPTTNQTRHCFTRYIEFHRCLAAKGEESNECERFAKYYRSLCPGDWIEKWNEQRENGTFPGPL
Disordered region (IsUnstruct)
**************FRFPTTNQTRHCFTRYIEFHRCLAAKGEESNECERFAKYYRSLCPGDWIEKWN************
Disordered Region (DISOPRED)
*****IE*KTAPADFRFPTTNQTRHCFTRYIEFHRCLAAKGEESNECERFAKYYRSLCPGDWIEKWNEQRENGTFPGPL
Disordered Region (DISEMBL)
MAADEIELKTAPADFRFPTTNQTRHCFTRYIEFHRCLAAKGEESNECERFAKYYRSLCPGDWIEKWNEQRE********
Disordered Region (DISPRO)
****EIELKTAPADFRFPTTNQTRHCFTRYIEFHRCLAAKGEESNECERFAKYYRSLCPGDWIEKWNEQRENGTF****
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MAADEIELKTAPADFRFPTTNQTRHCFTRYIEFHRCLAAKGEESNECERFAKYYRSLCPGDWIEKWNEQRENGTFPGPL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	79	2.2.26 [Sep-21-2011]
Q945L0	78	Cytochrome c oxidase subu	yes	no	0.962	0.974	0.894	1e-36
Q9SUD3	78	Cytochrome c oxidase subu	no	no	0.962	0.974	0.881	3e-36
Q9S7L9	191	Cytochrome c oxidase subu	no	no	0.962	0.397	0.776	2e-35
O94581	86	Cytochrome c oxidase subu	yes	no	0.987	0.906	0.525	5e-20
Q01519	83	Cytochrome c oxidase subu	yes	no	0.911	0.867	0.5	2e-17
P14854	86	Cytochrome c oxidase subu	yes	no	0.898	0.825	0.513	3e-17
Q5RCT0	86	Cytochrome c oxidase subu	yes	no	0.898	0.825	0.513	3e-17
Q53CG4	87	Cytochrome c oxidase subu	yes	no	1.0	0.908	0.471	3e-17
Q4R374	87	Cytochrome c oxidase subu	N/A	no	1.0	0.908	0.471	3e-17
Q7YRK6	86	Cytochrome c oxidase subu	N/A	no	0.898	0.825	0.486	2e-16

>sp|Q945L0|CX6B2_ARATH Cytochrome c oxidase subunit 6b-2 OS=Arabidopsis thaliana GN=COX6B-2 PE=2 SV=1

 Score =  151 bits (382), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 68/76 (89%), Positives = 74/76 (97%)

Query: 4  DEIELKTAPADFRFPTTNQTRHCFTRYIEFHRCLAAKGEESNECERFAKYYRSLCPGDWI 63
          DEIELKTAPADFRFPTTNQTRHCFTRYIEFHRC  AKGEESN+CERFAKYYR+LCPG+W+
Sbjct: 3  DEIELKTAPADFRFPTTNQTRHCFTRYIEFHRCTTAKGEESNDCERFAKYYRALCPGEWV 62

Query: 64 EKWNEQRENGTFPGPL 79
          +KWNEQRE+GTFPGPL
Sbjct: 63 DKWNEQRESGTFPGPL 78

This protein is one of the nuclear-coded polypeptide chains of cytochrome c oxidase, the terminal oxidase in mitochondrial electron transport. This protein may be one of the heme-binding subunits of the oxidase.
Arabidopsis thaliana (taxid: 3702)

>sp|Q9SUD3|CX6B3_ARATH Cytochrome c oxidase subunit 6b-3 OS=Arabidopsis thaliana GN=COX6B-3 PE=2 SV=2

 Score =  150 bits (378), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 67/76 (88%), Positives = 73/76 (96%)

Query: 4  DEIELKTAPADFRFPTTNQTRHCFTRYIEFHRCLAAKGEESNECERFAKYYRSLCPGDWI 63
          DEIELKTAPADFRFPTTNQTRHCFTRYIEFHRC  AKGE++NECERFAKYYR+LCPG+W+
Sbjct: 3  DEIELKTAPADFRFPTTNQTRHCFTRYIEFHRCTTAKGEDANECERFAKYYRALCPGEWV 62

Query: 64 EKWNEQRENGTFPGPL 79
          +KWNEQRE GTFPGPL
Sbjct: 63 DKWNEQRETGTFPGPL 78

This protein is one of the nuclear-coded polypeptide chains of cytochrome c oxidase, the terminal oxidase in mitochondrial electron transport. This protein may be one of the heme-binding subunits of the oxidase.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9S7L9|CX6B1_ARATH Cytochrome c oxidase subunit 6b-1 OS=Arabidopsis thaliana GN=COX6B-1 PE=2 SV=1

 Score =  147 bits (371), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 59/76 (77%), Positives = 74/76 (97%)

Query: 4   DEIELKTAPADFRFPTTNQTRHCFTRYIEFHRCLAAKGEESNECERFAKYYRSLCPGDWI 63
           DEI+L+TAPADFRFPTTNQTRHCFTRY+E+HRC+AAKG+++ EC++FAK+YRSLCP +W+
Sbjct: 115 DEIKLETAPADFRFPTTNQTRHCFTRYVEYHRCVAAKGDDAPECDKFAKFYRSLCPSEWV 174

Query: 64  EKWNEQRENGTFPGPL 79
           ++WNEQRENGTFPGPL
Sbjct: 175 DRWNEQRENGTFPGPL 190

This protein is one of the nuclear-coded polypeptide chains of cytochrome c oxidase, the terminal oxidase in mitochondrial electron transport. This protein may be one of the heme-binding subunits of the oxidase.

Arabidopsis thaliana (taxid: 3702)

>sp|O94581|COX12_SCHPO Cytochrome c oxidase subunit 6B OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=cox12 PE=3 SV=2

 Score = 96.3 bits (238), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 41/78 (52%), Positives = 55/78 (70%)

Query: 2  AADEIELKTAPADFRFPTTNQTRHCFTRYIEFHRCLAAKGEESNECERFAKYYRSLCPGD 61
          A  +    T   D RFP TNQT+HCF  YI++ RC+ AKGE+   C++F   Y+SLCP +
Sbjct: 9  APKQFTFGTVGFDARFPNTNQTKHCFQSYIDYFRCIKAKGEDFVPCKQFWHAYQSLCPME 68

Query: 62 WIEKWNEQRENGTFPGPL 79
          W+E+W+EQRENGTFP P+
Sbjct: 69 WVERWDEQRENGTFPAPI 86

This protein is one of the nuclear-coded polypeptide chains of cytochrome c oxidase, the terminal oxidase in mitochondrial electron transport. This protein may be one of the heme-binding subunits of the oxidase.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|Q01519|COX12_YEAST Cytochrome c oxidase subunit 6B OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=COX12 PE=1 SV=2

 Score = 87.4 bits (215), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 36/72 (50%), Positives = 49/72 (68%)

Query: 8  LKTAPADFRFPTTNQTRHCFTRYIEFHRCLAAKGEESNECERFAKYYRSLCPGDWIEKWN 67
          L T   D RFP  NQT+HC+  Y+++H+C+  KGE+   C+ F K Y +LCP DWIEKW+
Sbjct: 9  LHTVGFDARFPQQNQTKHCWQSYVDYHKCVNMKGEDFAPCKVFWKTYNALCPLDWIEKWD 68

Query: 68 EQRENGTFPGPL 79
          +QRE G F G +
Sbjct: 69 DQREKGIFAGDI 80

This protein is one of the nuclear-coded polypeptide chains of cytochrome c oxidase, the terminal oxidase in mitochondrial electron transport. This protein may be one of the heme-binding subunits of the oxidase.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

>sp|P14854|CX6B1_HUMAN Cytochrome c oxidase subunit 6B1 OS=Homo sapiens GN=COX6B1 PE=1 SV=2

 Score = 87.4 bits (215), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 38/74 (51%), Positives = 51/74 (68%), Gaps = 3/74 (4%)

Query: 9  KTAPADFRFPTTNQTRHCFTRYIEFHRC---LAAKGEESNECERFAKYYRSLCPGDWIEK 65
          KTAP D RFP  NQTR+C+  Y++FHRC   + AKG + + CE + + Y+SLCP  W+  
Sbjct: 13 KTAPFDSRFPNQNQTRNCWQNYLDFHRCQKAMTAKGGDISVCEWYQRVYQSLCPTSWVTD 72

Query: 66 WNEQRENGTFPGPL 79
          W+EQR  GTFPG +
Sbjct: 73 WDEQRAEGTFPGKI 86

Connects the two COX monomers into the physiological dimeric form.

Homo sapiens (taxid: 9606)

>sp|Q5RCT0|CX6B1_PONAB Cytochrome c oxidase subunit 6B1 OS=Pongo abelii GN=COX6B1 PE=3 SV=3

 Score = 87.0 bits (214), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 38/74 (51%), Positives = 51/74 (68%), Gaps = 3/74 (4%)

Query: 9  KTAPADFRFPTTNQTRHCFTRYIEFHRC---LAAKGEESNECERFAKYYRSLCPGDWIEK 65
          KTAP D RFP  NQTR+C+  Y++FHRC   + AKG + + CE + + Y+SLCP  W+  
Sbjct: 13 KTAPFDSRFPNQNQTRNCWQNYLDFHRCQKAMTAKGGDISVCEWYQRVYQSLCPTSWVTD 72

Query: 66 WNEQRENGTFPGPL 79
          W+EQR  GTFPG +
Sbjct: 73 WDEQRAEGTFPGKI 86

Connects the two COX monomers into the physiological dimeric form.

Pongo abelii (taxid: 9601)

>sp|Q53CG4|CX6B1_MACMU Cytochrome c oxidase subunit 6B1 OS=Macaca mulatta GN=COX6B1 PE=3 SV=3

 Score = 87.0 bits (214), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 41/87 (47%), Positives = 55/87 (63%), Gaps = 8/87 (9%)

Query: 1  MAADEIE-----LKTAPADFRFPTTNQTRHCFTRYIEFHRC---LAAKGEESNECERFAK 52
          MA ++IE      KTAP D RFP  NQTR+C+  Y++FHRC   +  KG   + CE + +
Sbjct: 1  MAEEDIETKIKNYKTAPFDSRFPNQNQTRNCWQNYLDFHRCQKAMTTKGGNVSVCEWYQR 60

Query: 53 YYRSLCPGDWIEKWNEQRENGTFPGPL 79
           Y+SLCP  W+  W+EQR  GTFPG +
Sbjct: 61 VYQSLCPTSWVTDWDEQRAEGTFPGKI 87

Connects the two COX monomers into the physiological dimeric form.

Macaca mulatta (taxid: 9544)

>sp|Q4R374|CX6B1_MACFA Cytochrome c oxidase subunit 6B1 OS=Macaca fascicularis GN=COX6B1 PE=3 SV=3

 Score = 87.0 bits (214), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 41/87 (47%), Positives = 55/87 (63%), Gaps = 8/87 (9%)

Query: 1  MAADEIE-----LKTAPADFRFPTTNQTRHCFTRYIEFHRC---LAAKGEESNECERFAK 52
          MA ++IE      KTAP D RFP  NQTR+C+  Y++FHRC   +  KG   + CE + +
Sbjct: 1  MAEEDIETKIKNYKTAPFDSRFPNQNQTRNCWQNYLDFHRCQKAMTTKGGNVSVCEWYQR 60

Query: 53 YYRSLCPGDWIEKWNEQRENGTFPGPL 79
           Y+SLCP  W+  W+EQR  GTFPG +
Sbjct: 61 VYQSLCPTSWVTDWDEQRAEGTFPGKI 87

Connects the two COX monomers into the physiological dimeric form.

Macaca fascicularis (taxid: 9541)

>sp|Q7YRK6|CX6B1_TARSY Cytochrome c oxidase subunit 6B1 OS=Tarsius syrichta GN=COX6B1 PE=3 SV=3

 Score = 84.3 bits (207), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 36/74 (48%), Positives = 51/74 (68%), Gaps = 3/74 (4%)

Query: 9  KTAPADFRFPTTNQTRHCFTRYIEFHRC---LAAKGEESNECERFAKYYRSLCPGDWIEK 65
          KTAP D RFP  NQTR+C+  Y++FHRC   + AKG + + CE + + Y+SLCP  W+  
Sbjct: 13 KTAPFDSRFPNQNQTRNCWQNYLDFHRCEKAMTAKGGDVSVCEWYRRVYKSLCPISWVST 72

Query: 66 WNEQRENGTFPGPL 79
          W+++R  GTFPG +
Sbjct: 73 WDDRRAEGTFPGKI 86

This protein is one of the nuclear-coded polypeptide chains of cytochrome c oxidase, the terminal oxidase in mitochondrial electron transport. This protein may be one of the heme-binding subunits of the oxidase.

Tarsius syrichta (taxid: 9478)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	79
255574605	78	cytochrome C oxidase polypeptide vib, pu	0.974	0.987	0.896	2e-35
449453930	77	PREDICTED: cytochrome c oxidase subunit	0.962	0.987	0.907	2e-35
356562523	77	PREDICTED: cytochrome c oxidase subunit	0.949	0.974	0.933	2e-35
388500960	77	unknown [Lotus japonicus]	0.949	0.974	0.92	3e-35
449453928	102	PREDICTED: cytochrome c oxidase subunit	0.974	0.754	0.870	4e-35
449506246	102	PREDICTED: cytochrome c oxidase subunit	0.974	0.754	0.870	4e-35
18424030	78	cytochrome c oxidase subunit VIb [Arabid	0.962	0.974	0.894	4e-35
255633956	77	unknown [Glycine max]	0.949	0.974	0.92	5e-35
297799172	78	hypothetical protein ARALYDRAFT_913717 [	0.962	0.974	0.894	6e-35
356547849	77	PREDICTED: cytochrome c oxidase subunit	0.949	0.974	0.92	6e-35

>gi|255574605|ref|XP_002528213.1| cytochrome C oxidase polypeptide vib, putative [Ricinus communis] gi|223532374|gb|EEF34170.1| cytochrome C oxidase polypeptide vib, putative [Ricinus communis]

 Score =  152 bits (385), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 69/77 (89%), Positives = 75/77 (97%)

Query: 3  ADEIELKTAPADFRFPTTNQTRHCFTRYIEFHRCLAAKGEESNECERFAKYYRSLCPGDW 62
          ADEIELKTAPADFRFPTTNQTRHCFTRYIEFHRCLAAKGEE  EC+RFAKYYR+LCPG+W
Sbjct: 2  ADEIELKTAPADFRFPTTNQTRHCFTRYIEFHRCLAAKGEEPKECDRFAKYYRALCPGEW 61

Query: 63 IEKWNEQRENGTFPGPL 79
          +E+WNEQRENG+FPGPL
Sbjct: 62 VERWNEQRENGSFPGPL 78

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449453930|ref|XP_004144709.1| PREDICTED: cytochrome c oxidase subunit 6b-2-like isoform 2 [Cucumis sativus] gi|449453932|ref|XP_004144710.1| PREDICTED: cytochrome c oxidase subunit 6b-2-like isoform 3 [Cucumis sativus] gi|449506250|ref|XP_004162693.1| PREDICTED: cytochrome c oxidase subunit 6b-2-like isoform 2 [Cucumis sativus] gi|449506253|ref|XP_004162694.1| PREDICTED: cytochrome c oxidase subunit 6b-2-like isoform 3 [Cucumis sativus]

 Score =  152 bits (385), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 69/76 (90%), Positives = 73/76 (96%)

Query: 4  DEIELKTAPADFRFPTTNQTRHCFTRYIEFHRCLAAKGEESNECERFAKYYRSLCPGDWI 63
          DEIELKTAPADFRFPTTNQTRHCFTRYIEFHRCL  KGEES ECERFAKYYR+LCPG+W+
Sbjct: 2  DEIELKTAPADFRFPTTNQTRHCFTRYIEFHRCLTVKGEESGECERFAKYYRALCPGEWV 61

Query: 64 EKWNEQRENGTFPGPL 79
          +KWNEQRENGTFPGPL
Sbjct: 62 DKWNEQRENGTFPGPL 77

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356562523|ref|XP_003549519.1| PREDICTED: cytochrome c oxidase subunit 6b-1-like [Glycine max]

 Score =  152 bits (385), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 70/75 (93%), Positives = 73/75 (97%)

Query: 5  EIELKTAPADFRFPTTNQTRHCFTRYIEFHRCLAAKGEESNECERFAKYYRSLCPGDWIE 64
          EIELKTAPADFRFPTTNQTRHCFTRYIEFHRCLAAKGE S ECERFAKYYRSLCPG+W+E
Sbjct: 3  EIELKTAPADFRFPTTNQTRHCFTRYIEFHRCLAAKGENSGECERFAKYYRSLCPGEWVE 62

Query: 65 KWNEQRENGTFPGPL 79
          +WNEQRENGTFPGPL
Sbjct: 63 RWNEQRENGTFPGPL 77

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388500960|gb|AFK38546.1| unknown [Lotus japonicus]

 Score =  152 bits (384), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 69/75 (92%), Positives = 72/75 (96%)

Query: 5  EIELKTAPADFRFPTTNQTRHCFTRYIEFHRCLAAKGEESNECERFAKYYRSLCPGDWIE 64
          EIELKTAP DFRFPTTNQTRHCFTRYIEFHRCLA KGEES ECERFAKYYRSLCPG+W+E
Sbjct: 3  EIELKTAPVDFRFPTTNQTRHCFTRYIEFHRCLAVKGEESGECERFAKYYRSLCPGEWVE 62

Query: 65 KWNEQRENGTFPGPL 79
          KWNEQR+NGTFPGPL
Sbjct: 63 KWNEQRDNGTFPGPL 77

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449453928|ref|XP_004144708.1| PREDICTED: cytochrome c oxidase subunit 6b-2-like isoform 1 [Cucumis sativus]

 Score =  151 bits (382), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 67/77 (87%), Positives = 73/77 (94%)

Query: 3   ADEIELKTAPADFRFPTTNQTRHCFTRYIEFHRCLAAKGEESNECERFAKYYRSLCPGDW 62
           + +IELKTAPADFRFPTTNQTRHCFTRYIEFHRCL  KGEES ECERFAKYYR+LCPG+W
Sbjct: 26  SPQIELKTAPADFRFPTTNQTRHCFTRYIEFHRCLTVKGEESGECERFAKYYRALCPGEW 85

Query: 63  IEKWNEQRENGTFPGPL 79
           ++KWNEQRENGTFPGPL
Sbjct: 86  VDKWNEQRENGTFPGPL 102

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449506246|ref|XP_004162692.1| PREDICTED: cytochrome c oxidase subunit 6b-2-like isoform 1 [Cucumis sativus]

 Score =  151 bits (382), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 67/77 (87%), Positives = 73/77 (94%)

Query: 3   ADEIELKTAPADFRFPTTNQTRHCFTRYIEFHRCLAAKGEESNECERFAKYYRSLCPGDW 62
           + +IELKTAPADFRFPTTNQTRHCFTRYIEFHRCL  KGEES ECERFAKYYR+LCPG+W
Sbjct: 26  SSQIELKTAPADFRFPTTNQTRHCFTRYIEFHRCLTVKGEESGECERFAKYYRALCPGEW 85

Query: 63  IEKWNEQRENGTFPGPL 79
           ++KWNEQRENGTFPGPL
Sbjct: 86  VDKWNEQRENGTFPGPL 102

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18424030|ref|NP_568867.1| cytochrome c oxidase subunit VIb [Arabidopsis thaliana] gi|75164320|sp|Q945L0.1|CX6B2_ARATH RecName: Full=Cytochrome c oxidase subunit 6b-2; Short=AtCOX6b-2 gi|15724312|gb|AAL06549.1|AF412096_1 AT4g28060/T13J8_170 [Arabidopsis thaliana] gi|21360507|gb|AAM47369.1| AT4g28060/T13J8_170 [Arabidopsis thaliana] gi|26450389|dbj|BAC42309.1| unknown protein [Arabidopsis thaliana] gi|110736679|dbj|BAF00303.1| hypothetical protein [Arabidopsis thaliana] gi|332009572|gb|AED96955.1| cytochrome c oxidase subunit VIb [Arabidopsis thaliana]

 Score =  151 bits (382), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 68/76 (89%), Positives = 74/76 (97%)

Query: 4  DEIELKTAPADFRFPTTNQTRHCFTRYIEFHRCLAAKGEESNECERFAKYYRSLCPGDWI 63
          DEIELKTAPADFRFPTTNQTRHCFTRYIEFHRC  AKGEESN+CERFAKYYR+LCPG+W+
Sbjct: 3  DEIELKTAPADFRFPTTNQTRHCFTRYIEFHRCTTAKGEESNDCERFAKYYRALCPGEWV 62

Query: 64 EKWNEQRENGTFPGPL 79
          +KWNEQRE+GTFPGPL
Sbjct: 63 DKWNEQRESGTFPGPL 78

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255633956|gb|ACU17340.1| unknown [Glycine max]

 Score =  151 bits (382), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 69/75 (92%), Positives = 72/75 (96%)

Query: 5  EIELKTAPADFRFPTTNQTRHCFTRYIEFHRCLAAKGEESNECERFAKYYRSLCPGDWIE 64
          EIELKTAPADFRFPTTNQTRHCFTRYIEFHRCL AKGE S ECERFAKYYRSLCPG+W+E
Sbjct: 3  EIELKTAPADFRFPTTNQTRHCFTRYIEFHRCLVAKGENSGECERFAKYYRSLCPGEWVE 62

Query: 65 KWNEQRENGTFPGPL 79
          +WNEQRENGTFPGPL
Sbjct: 63 RWNEQRENGTFPGPL 77

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297799172|ref|XP_002867470.1| hypothetical protein ARALYDRAFT_913717 [Arabidopsis lyrata subsp. lyrata] gi|297313306|gb|EFH43729.1| hypothetical protein ARALYDRAFT_913717 [Arabidopsis lyrata subsp. lyrata]

 Score =  151 bits (381), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 68/76 (89%), Positives = 73/76 (96%)

Query: 4  DEIELKTAPADFRFPTTNQTRHCFTRYIEFHRCLAAKGEESNECERFAKYYRSLCPGDWI 63
          DEIELKTAPADFRFPTTNQTRHCFTRYIEFHRC  AKGE+SNECERFAKYYR+LCPG+W+
Sbjct: 3  DEIELKTAPADFRFPTTNQTRHCFTRYIEFHRCTTAKGEDSNECERFAKYYRALCPGEWV 62

Query: 64 EKWNEQRENGTFPGPL 79
          +KWNEQRE GTFPGPL
Sbjct: 63 DKWNEQRETGTFPGPL 78

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356547849|ref|XP_003542317.1| PREDICTED: cytochrome c oxidase subunit 6b-2-like [Glycine max]

 Score =  151 bits (381), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 69/75 (92%), Positives = 73/75 (97%)

Query: 5  EIELKTAPADFRFPTTNQTRHCFTRYIEFHRCLAAKGEESNECERFAKYYRSLCPGDWIE 64
          EIELKTAPADFRFPTTNQTRHCFTRYIEFHRCLAAKGE S ECERFAKYYRSLCPG+W+E
Sbjct: 3  EIELKTAPADFRFPTTNQTRHCFTRYIEFHRCLAAKGENSGECERFAKYYRSLCPGEWVE 62

Query: 65 KWNEQRENGTFPGPL 79
          +WNEQRE+GTFPGPL
Sbjct: 63 RWNEQRESGTFPGPL 77

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	79
TAIR|locus:505006698	78	AT5G57815 [Arabidopsis thalian	0.962	0.974	0.894	8.9e-38
TAIR|locus:2009497	191	COX6B "cytochrome C oxidase 6B	0.962	0.397	0.776	1.7e-34
POMBASE|SPCC1442.08c	86	cox12 "cytochrome c oxidase su	0.987	0.906	0.525	3.9e-21
FB|FBgn0031066	96	CoVIb "Cytochrome c oxidase su	0.898	0.739	0.549	2.1e-20
ZFIN|ZDB-GENE-040426-1566	86	cox6b2 "cytochrome c oxidase s	0.898	0.825	0.5	2.5e-19
UNIPROTKB|P14854	86	COX6B1 "Cytochrome c oxidase s	0.898	0.825	0.513	1.4e-18
ZFIN|ZDB-GENE-040718-448	86	cox6b1 "cytochrome c oxidase s	0.898	0.825	0.513	1.7e-18
SGD|S000004028	83	COX12 "Subunit VIb of cytochro	0.911	0.867	0.5	7.5e-18
UNIPROTKB|P00429	86	COX6B1 "Cytochrome c oxidase s	0.898	0.825	0.472	2e-17
UNIPROTKB|E2R9R2	86	LOC612644 "Uncharacterized pro	0.898	0.825	0.472	2e-17

TAIR|locus:505006698 AT5G57815 [Arabidopsis thaliana (taxid:3702)]

 Score = 405 (147.6 bits), Expect = 8.9e-38, P = 8.9e-38
 Identities = 68/76 (89%), Positives = 74/76 (97%)

Query:     4 DEIELKTAPADFRFPTTNQTRHCFTRYIEFHRCLAAKGEESNECERFAKYYRSLCPGDWI 63
             DEIELKTAPADFRFPTTNQTRHCFTRYIEFHRC  AKGEESN+CERFAKYYR+LCPG+W+
Sbjct:     3 DEIELKTAPADFRFPTTNQTRHCFTRYIEFHRCTTAKGEESNDCERFAKYYRALCPGEWV 62

Query:    64 EKWNEQRENGTFPGPL 79
             +KWNEQRE+GTFPGPL
Sbjct:    63 DKWNEQRESGTFPGPL 78

GO:0004129 "cytochrome-c oxidase activity" evidence=IEA;ISS

GO:0005739 "mitochondrion" evidence=IEA;ISS

GO:0009507 "chloroplast" evidence=ISM

GO:0006661 "phosphatidylinositol biosynthetic process" evidence=RCA

TAIR|locus:2009497 COX6B "cytochrome C oxidase 6B" [Arabidopsis thaliana (taxid:3702)]

 Score = 374 (136.7 bits), Expect = 1.7e-34, P = 1.7e-34
 Identities = 59/76 (77%), Positives = 74/76 (97%)

Query:     4 DEIELKTAPADFRFPTTNQTRHCFTRYIEFHRCLAAKGEESNECERFAKYYRSLCPGDWI 63
             DEI+L+TAPADFRFPTTNQTRHCFTRY+E+HRC+AAKG+++ EC++FAK+YRSLCP +W+
Sbjct:   115 DEIKLETAPADFRFPTTNQTRHCFTRYVEYHRCVAAKGDDAPECDKFAKFYRSLCPSEWV 174

Query:    64 EKWNEQRENGTFPGPL 79
             ++WNEQRENGTFPGPL
Sbjct:   175 DRWNEQRENGTFPGPL 190

GO:0004129 "cytochrome-c oxidase activity" evidence=IEA;ISS

GO:0005739 "mitochondrion" evidence=IEA;ISS;IDA

GO:0055114 "oxidation-reduction process" evidence=ISS

GO:0009535 "chloroplast thylakoid membrane" evidence=IDA

GO:0009579 "thylakoid" evidence=IDA

GO:0009507 "chloroplast" evidence=IDA

GO:0009651 "response to salt stress" evidence=IEP

GO:0005507 "copper ion binding" evidence=IDA

GO:0009853 "photorespiration" evidence=RCA

POMBASE|SPCC1442.08c cox12 "cytochrome c oxidase subunit VIb (predicted)" [Schizosaccharomyces pombe (taxid:4896)]

 Score = 248 (92.4 bits), Expect = 3.9e-21, P = 3.9e-21
 Identities = 41/78 (52%), Positives = 55/78 (70%)

Query:     2 AADEIELKTAPADFRFPTTNQTRHCFTRYIEFHRCLAAKGEESNECERFAKYYRSLCPGD 61
             A  +    T   D RFP TNQT+HCF  YI++ RC+ AKGE+   C++F   Y+SLCP +
Sbjct:     9 APKQFTFGTVGFDARFPNTNQTKHCFQSYIDYFRCIKAKGEDFVPCKQFWHAYQSLCPME 68

Query:    62 WIEKWNEQRENGTFPGPL 79
             W+E+W+EQRENGTFP P+
Sbjct:    69 WVERWDEQRENGTFPAPI 86

GO:0005634 "nucleus" evidence=IDA

GO:0005751 "mitochondrial respiratory chain complex IV" evidence=ISO

GO:0005829 "cytosol" evidence=IDA

GO:0009060 "aerobic respiration" evidence=IC

GO:0033617 "mitochondrial respiratory chain complex IV assembly" evidence=ISO

GO:0004129 "cytochrome-c oxidase activity" evidence=ISO

FB|FBgn0031066 CoVIb "Cytochrome c oxidase subunit VIb" [Drosophila melanogaster (taxid:7227)]

 Score = 241 (89.9 bits), Expect = 2.1e-20, P = 2.1e-20
 Identities = 39/71 (54%), Positives = 52/71 (73%)

Query:     7 ELKTAPADFRFPTTNQTRHCFTRYIEFHRCLAAKGEESNECERFAKYYRSLCPGDWIEKW 66
             +L+TAP D RFP  N TR+C+  YI+FHRC   +GE+   C  F K Y+S+CP  W+EKW
Sbjct:    24 KLETAPFDPRFPNQNVTRYCYQSYIDFHRCQKKRGEDFAPCNYFQKVYKSMCPNAWVEKW 83

Query:    67 NEQRENGTFPG 77
             ++QRE+GTFPG
Sbjct:    84 DDQRESGTFPG 94

GO:0005751 "mitochondrial respiratory chain complex IV" evidence=ISS

GO:0004129 "cytochrome-c oxidase activity" evidence=ISS

GO:0022008 "neurogenesis" evidence=IMP

ZFIN|ZDB-GENE-040426-1566 cox6b2 "cytochrome c oxidase subunit VIb polypeptide 2" [Danio rerio (taxid:7955)]

 Score = 231 (86.4 bits), Expect = 2.5e-19, P = 2.5e-19
 Identities = 37/74 (50%), Positives = 56/74 (75%)

Query:     9 KTAPADFRFPTTNQTRHCFTRYIEFHRC---LAAKGEESNECERFAKYYRSLCPGDWIEK 65
             +TAP D RFP TNQTR+C+  Y++FHRC   L++KG++++ CE + + Y+SLCP  W+ K
Sbjct:    13 RTAPFDARFPNTNQTRNCYQNYLDFHRCNKALSSKGQDTSPCEWYQRVYKSLCPISWVGK 72

Query:    66 WNEQRENGTFPGPL 79
             W+ Q E+G+FPG +
Sbjct:    73 WDSQIEDGSFPGKI 86

GO:0005739 "mitochondrion" evidence=IEA

GO:0004129 "cytochrome-c oxidase activity" evidence=IEA

UNIPROTKB|P14854 COX6B1 "Cytochrome c oxidase subunit 6B1" [Homo sapiens (taxid:9606)]

 Score = 224 (83.9 bits), Expect = 1.4e-18, P = 1.4e-18
 Identities = 38/74 (51%), Positives = 51/74 (68%)

Query:     9 KTAPADFRFPTTNQTRHCFTRYIEFHRC---LAAKGEESNECERFAKYYRSLCPGDWIEK 65
             KTAP D RFP  NQTR+C+  Y++FHRC   + AKG + + CE + + Y+SLCP  W+  
Sbjct:    13 KTAPFDSRFPNQNQTRNCWQNYLDFHRCQKAMTAKGGDISVCEWYQRVYQSLCPTSWVTD 72

Query:    66 WNEQRENGTFPGPL 79
             W+EQR  GTFPG +
Sbjct:    73 WDEQRAEGTFPGKI 86

GO:0005758 "mitochondrial intermembrane space" evidence=IEA

GO:0004129 "cytochrome-c oxidase activity" evidence=NAS

GO:0055114 "oxidation-reduction process" evidence=NAS

GO:0005743 "mitochondrial inner membrane" evidence=TAS

GO:0022904 "respiratory electron transport chain" evidence=TAS

GO:0044281 "small molecule metabolic process" evidence=TAS

GO:0005739 "mitochondrion" evidence=IDA

ZFIN|ZDB-GENE-040718-448 cox6b1 "cytochrome c oxidase subunit VIb polypeptide 1" [Danio rerio (taxid:7955)]

 Score = 223 (83.6 bits), Expect = 1.7e-18, P = 1.7e-18
 Identities = 38/74 (51%), Positives = 52/74 (70%)

Query:     9 KTAPADFRFPTTNQTRHCFTRYIEFHRC---LAAKGEESNECERFAKYYRSLCPGDWIEK 65
             +TAP D RFP  NQTR+C+  Y+++HRC   L AKG ++  C+ + + Y+SLCP  WIEK
Sbjct:    13 RTAPFDARFPNQNQTRNCWQNYLDYHRCQKALDAKGVDTAPCDWYKRVYKSLCPLSWIEK 72

Query:    66 WNEQRENGTFPGPL 79
             W+ QRE G FPG +
Sbjct:    73 WDTQREEGNFPGKI 86

GO:0005739 "mitochondrion" evidence=IEA

GO:0004129 "cytochrome-c oxidase activity" evidence=IEA

SGD|S000004028 COX12 "Subunit VIb of cytochrome c oxidase" [Saccharomyces cerevisiae (taxid:4932)]

 Score = 217 (81.4 bits), Expect = 7.5e-18, P = 7.5e-18
 Identities = 36/72 (50%), Positives = 49/72 (68%)

Query:     8 LKTAPADFRFPTTNQTRHCFTRYIEFHRCLAAKGEESNECERFAKYYRSLCPGDWIEKWN 67
             L T   D RFP  NQT+HC+  Y+++H+C+  KGE+   C+ F K Y +LCP DWIEKW+
Sbjct:     9 LHTVGFDARFPQQNQTKHCWQSYVDYHKCVNMKGEDFAPCKVFWKTYNALCPLDWIEKWD 68

Query:    68 EQRENGTFPGPL 79
             +QRE G F G +
Sbjct:    69 DQREKGIFAGDI 80

GO:0005758 "mitochondrial intermembrane space" evidence=IDA

GO:0005739 "mitochondrion" evidence=IEA;IDA

GO:0004129 "cytochrome-c oxidase activity" evidence=IEA;IDA;IPI

GO:0016021 "integral to membrane" evidence=ISM

GO:0005751 "mitochondrial respiratory chain complex IV" evidence=IPI

GO:0033617 "mitochondrial respiratory chain complex IV assembly" evidence=IMP

UNIPROTKB|P00429 COX6B1 "Cytochrome c oxidase subunit 6B1" [Bos taurus (taxid:9913)]

 Score = 213 (80.0 bits), Expect = 2.0e-17, P = 2.0e-17
 Identities = 35/74 (47%), Positives = 51/74 (68%)

Query:     9 KTAPADFRFPTTNQTRHCFTRYIEFHRC---LAAKGEESNECERFAKYYRSLCPGDWIEK 65
             +TAP D RFP  NQTR+C+  Y++FHRC   + AKG + + CE + + Y+SLCP  W+  
Sbjct:    13 QTAPFDSRFPNQNQTRNCWQNYLDFHRCEKAMTAKGGDVSVCEWYRRVYKSLCPISWVST 72

Query:    66 WNEQRENGTFPGPL 79
             W+++R  GTFPG +
Sbjct:    73 WDDRRAEGTFPGKI 86

GO:0005743 "mitochondrial inner membrane" evidence=ISS

GO:0005739 "mitochondrion" evidence=ISS

GO:0005758 "mitochondrial intermembrane space" evidence=IEA

GO:0004129 "cytochrome-c oxidase activity" evidence=IEA

UNIPROTKB|E2R9R2 LOC612644 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 213 (80.0 bits), Expect = 2.0e-17, P = 2.0e-17
 Identities = 35/74 (47%), Positives = 51/74 (68%)

Query:     9 KTAPADFRFPTTNQTRHCFTRYIEFHRC---LAAKGEESNECERFAKYYRSLCPGDWIEK 65
             +TAP D RFP  NQTR+C+  Y++FHRC   + AKG + + CE + + Y+SLCP  W+  
Sbjct:    13 QTAPFDSRFPNQNQTRNCWQNYLDFHRCEKAMTAKGGDVSVCEWYRRVYKSLCPISWVSA 72

Query:    66 WNEQRENGTFPGPL 79
             W+++R  GTFPG +
Sbjct:    73 WDDRRAEGTFPGKI 86

GO:0005739 "mitochondrion" evidence=IEA

GO:0004129 "cytochrome-c oxidase activity" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q5RCT0	CX6B1_PONAB	No assigned EC number	0.5135	0.8987	0.8255	yes	no
Q9SUD3	CX6B3_ARATH	No assigned EC number	0.8815	0.9620	0.9743	no	no
P56391	CX6B1_MOUSE	No assigned EC number	0.4594	0.8987	0.8255	yes	no
P00429	CX6B1_BOVIN	No assigned EC number	0.4729	0.8987	0.8255	yes	no
Q53CG4	CX6B1_MACMU	No assigned EC number	0.4712	1.0	0.9080	yes	no
O94581	COX12_SCHPO	No assigned EC number	0.5256	0.9873	0.9069	yes	no
Q01519	COX12_YEAST	No assigned EC number	0.5	0.9113	0.8674	yes	no
Q54P95	COX6B_DICDI	No assigned EC number	0.3802	0.8987	0.9102	yes	no
Q945L0	CX6B2_ARATH	No assigned EC number	0.8947	0.9620	0.9743	yes	no
P14854	CX6B1_HUMAN	No assigned EC number	0.5135	0.8987	0.8255	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	scaffold_701459.1	annotation not avaliable (78 aa)
		(Arabidopsis lyrata)
Predicted Functional Partners:
	fgenesh1_pg.C_scaffold_8000176	annotation not avaliable (257 aa)					•	•	•		0.629
	fgenesh2_kg.5__730__AT2G07687.1	annotation not avaliable (265 aa)					•	•	•		0.555
	scaffold_100176.1	annotation not avaliable (287 aa)						•	•		0.411

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	79
cd00926	75	cd00926, Cyt_c_Oxidase_VIb, Cytochrome c oxidase s	1e-36
pfam02297	66	pfam02297, COX6B, Cytochrome oxidase c subunit VIb	7e-24

>gnl|CDD|238466 cd00926, Cyt_c_Oxidase_VIb, Cytochrome c oxidase subunit VIb

 Score =  117 bits (295), Expect = 1e-36
 Identities = 43/75 (57%), Positives = 58/75 (77%)

Query: 4  DEIELKTAPADFRFPTTNQTRHCFTRYIEFHRCLAAKGEESNECERFAKYYRSLCPGDWI 63
          D   L TAP D RFP  NQT+HC+ RY+++HRC+ AKGE+++ C++F + Y SLCP +W+
Sbjct: 1  DAGPLTTAPFDPRFPNQNQTKHCWQRYVDYHRCIKAKGEDASPCKKFRRVYESLCPQEWL 60

Query: 64 EKWNEQRENGTFPGP 78
          EKW+EQRE GTFPG 
Sbjct: 61 EKWDEQREEGTFPGK 75

Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit VIb is one of three mammalian subunits that lacks a transmembrane region. It is located on the cytosolic side of the membrane and helps form the dimer interface with the corresponding subunit on the other monomer complex. Length = 75

>gnl|CDD|216964 pfam02297, COX6B, Cytochrome oxidase c subunit VIb

 Score = 84.7 bits (210), Expect = 7e-24
 Identities = 30/65 (46%), Positives = 42/65 (64%), Gaps = 4/65 (6%)

Query: 16 RFPTTNQTRHCFTRYIEFHRCLAAKGEESNECERFAKYYRSLCPGDWIEKWNEQR----E 71
          RFP  NQ +HC+    +F +CL   GE+++ C++F K Y SLCP  W+E ++EQR    E
Sbjct: 2  RFPNQNQRKHCWQARDDFFKCLDKNGEDNSPCKKFKKNYESLCPASWVEYFDEQRVDLRE 61

Query: 72 NGTFP 76
           GTFP
Sbjct: 62 EGTFP 66

Cytochrome c oxidase, a 13 sub-unit complex, EC:1.9.3.1 is the terminal oxidase in the mitochondrial electron transport chain. This family is composed of the potentially heme-binding subunit IVb of the oxidase. Length = 66

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	79
KOG3057	112	consensus Cytochrome c oxidase, subunit VIb/COX12	100.0
cd00926	75	Cyt_c_Oxidase_VIb Cytochrome c oxidase subunit VIb	100.0
PF02297	76	COX6B: Cytochrome oxidase c subunit VIb; InterPro:	99.95
PF06747	35	CHCH: CHCH domain; InterPro: IPR010625 A conserved	94.86
KOG4618	74	consensus Uncharacterized conserved protein [Funct	94.01

>KOG3057 consensus Cytochrome c oxidase, subunit VIb/COX12 [Energy production and conversion]

Probab=100.00  E-value=1.4e-41  Score=224.69  Aligned_cols=74  Identities=69%  Similarity=1.424  Sum_probs=72.3

Q ss_pred             ccccCCCCCCCCCChHHHHHHHHHhHHHHHHhhhcCCCchHHHHHHHHHHhhChHHHHHHHHHhhhhCCCCCCC
Q 034905            6 IELKTAPADFRFPTTNQTRHCFTRYIEFHRCLAAKGEESNECERFAKYYRSLCPGDWIEKWNEQRENGTFPGPL   79 (79)
Q Consensus         6 ~~~~t~~~D~RfPn~nq~k~Cw~~y~~y~~C~~~~Ged~~~C~~~~~~y~s~CP~~Wve~wde~R~~g~f~~~~   79 (79)
                      ..|.|+|+|+||||+|||+|||++|+|||||++++|+|..+|++|+++|+|+||.+||++|||||++|+|||+|
T Consensus        38 ~~l~tap~d~RFP~~nqtrhCf~~y~dyhrC~~~~geD~~~Ck~f~~~y~SlCP~~WV~kWdeqre~G~Fpg~~  111 (112)
T KOG3057|consen   38 KLLTTAPVDARFPNTNQTRHCFQRYVDYHRCIKAKGEDANPCKKFQKVYRSLCPGEWVEKWDEQRENGTFPGPI  111 (112)
T ss_pred             cccccccccccCCCcchhHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHhCcHHHHHHHHHhhhcCCCCCCC
Confidence            56999999999999999999999999999999999999999999999999999999999999999999999986

>cd00926 Cyt_c_Oxidase_VIb Cytochrome c oxidase subunit VIb

Probab=100.00  E-value=3.2e-41  Score=209.89  Aligned_cols=73  Identities=58%  Similarity=1.253  Sum_probs=71.3

Q ss_pred             ccccCCCCCCCCCChHHHHHHHHHhHHHHHHhhhcCCCchHHHHHHHHHHhhChHHHHHHHHHhhhhCCCCCC
Q 034905            6 IELKTAPADFRFPTTNQTRHCFTRYIEFHRCLAAKGEESNECERFAKYYRSLCPGDWIEKWNEQRENGTFPGP   78 (79)
Q Consensus         6 ~~~~t~~~D~RfPn~nq~k~Cw~~y~~y~~C~~~~Ged~~~C~~~~~~y~s~CP~~Wve~wde~R~~g~f~~~   78 (79)
                      +.+.|+|+||||||+|||++||++||+||+|++++|+|.++|++|++.|+++||++||++|+|+|++|+||++
T Consensus         3 ~~~~t~~~D~RfP~~nq~k~Cw~~y~~y~~Cl~~~ged~~~C~~~~~~~es~Cp~~Wve~w~ekR~~g~f~~~   75 (75)
T cd00926           3 GPLTTAPFDPRFPNQNQTKHCWQRYVDYHRCIKAKGEDASPCKKFRRVYESLCPQEWLEKWDEQREEGTFPGK   75 (75)
T ss_pred             ccccCCCCCCCCCChHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhCcHHHHHHHHHHHHhCCCCCC
Confidence            5689999999999999999999999999999999999999999999999999999999999999999999986

Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit VIb is one of three mammalian subunits that lacks a transmembrane region. It is located on the cytosolic side of the membrane and helps form the dimer interface with the corresponding subunit on the other monomer complex.

>PF02297 COX6B: Cytochrome oxidase c subunit VIb; InterPro: IPR003213 Cytochrome c oxidase (1

Probab=99.95  E-value=3.3e-28  Score=150.68  Aligned_cols=58  Identities=34%  Similarity=0.859  Sum_probs=50.4

Q ss_pred             CCCCChHHHHHHHHHhHHHHHHhhhcCC---------CchHHHHHHHHHHhhChHHHHHHHHHhhhh
Q 034905           15 FRFPTTNQTRHCFTRYIEFHRCLAAKGE---------ESNECERFAKYYRSLCPGDWIEKWNEQREN   72 (79)
Q Consensus        15 ~RfPn~nq~k~Cw~~y~~y~~C~~~~Ge---------d~~~C~~~~~~y~s~CP~~Wve~wde~R~~   72 (79)
                      ||||++|||++||++||+||+||+.+|+         +.+.|+.+++.|+++||.+||++|+++|..
T Consensus         1 ~rfP~~~~r~~Cw~arD~y~~Cl~~~~~~~~~~~~~~~~~~C~~~~~~ye~~Cp~sWv~~f~~~R~~   67 (76)
T PF02297_consen    1 PRFPNRNQRKKCWQARDDYFKCLDKNGEPDSEKEKKKDESACKYFRKNYESNCPSSWVKYFDEKRVY   67 (76)
T ss_dssp             -TS-SSB-HHHHHHHHHHHHHHHHHHHH------TTTTGGGGHHHHHHHHHHS-HHHHHHHHHH---
T ss_pred             CCCCChHHHHHHHHHHHHHHHHHHHcCccccccccccchhhhHHHHHHHHHhCcHHHHHHHHHHhhH
Confidence            7999999999999999999999999999         899999999999999999999999999443

9.3.1 from EC) is an oligomeric enzymatic complex that is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptide subunits. One of these subunits is the potentially haem-binding subunit, VIb, which is encoded in the nucleus []. ; GO: 0004129 cytochrome-c oxidase activity, 0005739 mitochondrion; PDB: 1OCC_U 1OCR_U 2DYS_H 3ASO_H 3AG3_U 2EIL_H 2EIJ_U 3AG2_U 3ABM_U 2EIN_U ....

>PF06747 CHCH: CHCH domain; InterPro: IPR010625 A conserved motif was identified in the LOC118487 protein was called the CHCH motif

Probab=94.86  E-value=0.026  Score=29.30  Aligned_cols=31  Identities=19%  Similarity=0.472  Sum_probs=26.2

Q ss_pred             HHHHhHHHHHHhhhcCCCchHHHHHHHHHHh
Q 034905           26 CFTRYIEFHRCLAAKGEESNECERFAKYYRS   56 (79)
Q Consensus        26 Cw~~y~~y~~C~~~~Ged~~~C~~~~~~y~s   56 (79)
                      |-.-...|..|++.++.+.+.|..+.++|..
T Consensus         1 C~~e~~~~~~Cl~~n~~~~~~C~~~~~~~~~   31 (35)
T PF06747_consen    1 CAEEMKAYLACLKENNFDWSKCRKEFKAYKE   31 (35)
T ss_dssp             THHHHHHHHHHHHCH-SSTCCCHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHCCCcHHhhHHHHHHHHH
Confidence            4456778999999999999999999999976

Alignment of this protein with related members showed the presence of three subgroups of proteins, which are called the S (Small), N (N-terminal extended) and C (C-terminal extended) subgroups. All three sub-groups of proteins have in common that they contain a predicted conserved [coiled coil 1]-[helix 1]-[coiled coil 2]-[helix 2] domain (CHCH domain). Within each helix of the CHCH domain, there are two cysteines present in a C-X9-C motif. The N-group contains an additional double helix domain, and each helix contains the C-X9-C motif. This family contains a number of characterised proteins: Cox19 protein - a nuclear gene of Saccharomyces cerevisiae, codes for an 11 kDa protein (Cox19p) required for expression of cytochrome oxidase. Because cox19 mutants are able to synthesise the mitochondrial and nuclear gene products of cytochrome oxidase, Cox19p probably functions post-translationally during assembly of the enzyme. Cox19p is present in the cytoplasm and mitochondria, where it exists as a soluble intermembrane protein. This dual location is similar to what was previously reported for Cox17p, a low molecular weight copper protein thought to be required for maturation of the CuA centre of subunit 2 of cytochrome oxidase. Cox19p have four conserved potential metal ligands, these are three cysteines and one histidine. Mrp10 - belongs to the class of yeast mitochondrial ribosomal proteins that are essential for translation []. Eukaryotic NADH-ubiquinone oxidoreductase 19 kDa (NDUFA8) subunit []. The CHCH domain was previously called DUF657 []. ; PDB: 2ZXT_A 3A3C_A 2L0Y_A 2K3J_A.

>KOG4618 consensus Uncharacterized conserved protein [Function unknown]

Probab=94.01  E-value=0.16  Score=31.69  Aligned_cols=47  Identities=21%  Similarity=0.537  Sum_probs=41.0

Q ss_pred             HHHHHHhHHHHHHhhhcCCCchHHHHHHHHHHhhChHHHHHHHHHhhh
Q 034905           24 RHCFTRYIEFHRCLAAKGEESNECERFAKYYRSLCPGDWIEKWNEQRE   71 (79)
Q Consensus        24 k~Cw~~y~~y~~C~~~~Ged~~~C~~~~~~y~s~CP~~Wve~wde~R~   71 (79)
                      .-|...+..=++||++++-|-+.|+.++.+|+ .|-..|.+-=-|+|.
T Consensus        22 nPCl~es~aSfkCLeennyDRsKCq~yFd~Yk-eCKkfwn~ar~errk   68 (74)
T KOG4618|consen   22 NPCLLESSASFKCLEENNYDRSKCQDYFDVYK-ECKKFWNEARLERRK   68 (74)
T ss_pred             ChHHHHHHHHHHHHHhcCccHHHHHHHHHHHH-HHHHHHHHHHHHHhh
Confidence            56999999999999999999999999999997 588888877666654

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	79
2y69_H	86	Bovine Heart Cytochrome C Oxidase Re-Refined With M		3e-17
1occ_H	85	Structure Of Bovine Heart Cytochrome C Oxidase At T		3e-17

>pdb|2Y69|H Chain H, Bovine Heart Cytochrome C Oxidase Re-Refined With Molecular Oxygen Length = 86

Iteration: 1
 Score = 83.2 bits (204), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 35/74 (47%), Positives = 51/74 (68%), Gaps = 3/74 (4%)
Query: 9  KTAPADFRFPTTNQTRHCFTRYIEFHRC---LAAKGEESNECERFAKYYRSLCPGDWIEK 65
          +TAP D RFP  NQTR+C+  Y++FHRC   + AKG + + CE + + Y+SLCP  W+  
Sbjct: 13 QTAPFDSRFPNQNQTRNCWQNYLDFHRCEKAMTAKGGDVSVCEWYRRVYKSLCPISWVST 72
Query: 66 WNEQRENGTFPGPL 79
          W+++R  GTFPG +
Sbjct: 73 WDDRRAEGTFPGKI 86

>pdb|1OCC|H Chain H, Structure Of Bovine Heart Cytochrome C Oxidase At The Fully Oxidized State Length = 85

Iteration: 1
 Score = 83.2 bits (204), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 35/74 (47%), Positives = 51/74 (68%), Gaps = 3/74 (4%)
Query: 9  KTAPADFRFPTTNQTRHCFTRYIEFHRC---LAAKGEESNECERFAKYYRSLCPGDWIEK 65
          +TAP D RFP  NQTR+C+  Y++FHRC   + AKG + + CE + + Y+SLCP  W+  
Sbjct: 12 QTAPFDSRFPNQNQTRNCWQNYLDFHRCEKAMTAKGGDVSVCEWYRRVYKSLCPISWVST 71
Query: 66 WNEQRENGTFPGPL 79
          W+++R  GTFPG +
Sbjct: 72 WDDRRAEGTFPGKI 85

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	79
1v54_H	85	AED, cytochrome C oxidase polypeptide VIB; oxidore	5e-36

>1v54_H AED, cytochrome C oxidase polypeptide VIB; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.51.1.1 PDB: 1oco_H* 1occ_H* 1ocz_H* 1ocr_H* 1v55_H* 2dyr_H* 2dys_H* 2eij_H* 2eik_H* 2eil_H* 2eim_H* 2ein_H* 2occ_H* 2ybb_S* 2zxw_H* 3abk_H* 3abl_H* 3abm_H* 3ag1_H* 3ag2_H* ... Length = 85

 Score =  115 bits (289), Expect = 5e-36
 Identities = 36/82 (43%), Positives = 53/82 (64%), Gaps = 3/82 (3%)

Query: 1  MAADEIELKTAPADFRFPTTNQTRHCFTRYIEFHRC---LAAKGEESNECERFAKYYRSL 57
          + A     +TAP D RFP  NQTR+C+  Y++FHRC   + AKG + + CE + + Y+SL
Sbjct: 4  IQAKIKNYQTAPFDSRFPNQNQTRNCWQNYLDFHRCEKAMTAKGGDVSVCEWYRRVYKSL 63

Query: 58 CPGDWIEKWNEQRENGTFPGPL 79
          CP  W+  W+++R  GTFPG +
Sbjct: 64 CPISWVSTWDDRRAEGTFPGKI 85

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	79
1v54_H	85	AED, cytochrome C oxidase polypeptide VIB; oxidore	100.0
2lqt_A	85	Coiled-coil-helix-coiled-coil-helix domain-contai	97.32
1ei0_A	38	P8MTCP1; helix-turn-helix, disulfide bridges, cell	92.54
1hp8_A	68	HU-P8; leukemia, cysteine motif; NMR {Homo sapiens	87.15
2lql_A	113	Coiled-coil-helix-coiled-coil-helix domain-contai	85.81

>1v54_H AED, cytochrome C oxidase polypeptide VIB; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.51.1.1 PDB: 1oco_H* 1occ_H* 1ocz_H* 1ocr_H* 1v55_H* 2dyr_H* 2dys_H* 2eij_H* 2eik_H* 2eil_H* 2eim_H* 2ein_H* 2occ_H* 2ybb_S* 2zxw_H* 3abk_H* 3abl_H* 3abm_H* 3ag1_H* 3ag2_H* ...

Probab=100.00  E-value=1.7e-42  Score=219.24  Aligned_cols=74  Identities=47%  Similarity=1.087  Sum_probs=71.2

Q ss_pred             ccccCCCCCCCCCChHHHHHHHHHhHHHHHHhhh---cCCCchHHHHHHHHHHhhChHHHHHHHHHhhhhCCCCCCC
Q 034905            6 IELKTAPADFRFPTTNQTRHCFTRYIEFHRCLAA---KGEESNECERFAKYYRSLCPGDWIEKWNEQRENGTFPGPL   79 (79)
Q Consensus         6 ~~~~t~~~D~RfPn~nq~k~Cw~~y~~y~~C~~~---~Ged~~~C~~~~~~y~s~CP~~Wve~wde~R~~g~f~~~~   79 (79)
                      ..++|+|+||||||+|||+|||++|++||+|+++   +|+|.++|++|+++|+|+||++||++|||||++|+|||+|
T Consensus         9 ~~~~tap~D~rFPn~nq~k~Cw~~y~df~~C~~~l~~~ged~~~C~~~~~~y~slCP~sWVe~wdeqR~~g~f~~k~   85 (85)
T 1v54_H            9 KNYQTAPFDSRFPNQNQTRNCWQNYLDFHRCEKAMTAKGGDVSVCEWYRRVYKSLCPISWVSTWDDRRAEGTFPGKI   85 (85)
T ss_dssp             CCCCSCCCCTTSCSSBCHHHHHHHHHHHHHHHHHHHHHTCCGGGGHHHHHHHHHHSCHHHHHHHHHHHHHTCCCSCC
T ss_pred             cccccCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHcChHHHHHHHHHHHHhCCCCCCC
Confidence            5689999999999999999999999999999555   9999999999999999999999999999999999999997

>2lqt_A Coiled-coil-helix-coiled-coil-helix domain-contai protein 7; CHCH domain, mitochondrial import, alpha-hairpin, MIA40-DEPE disulfide relay system; NMR {Homo sapiens}

Probab=97.32  E-value=0.00036  Score=43.69  Aligned_cols=52  Identities=23%  Similarity=0.500  Sum_probs=48.4

Q ss_pred             HHHHHhHHHHHHhhhcCCCchHHHHHHHHHHhhChHHHHHHHHHhhhhCCCCC
Q 034905           25 HCFTRYIEFHRCLAAKGEESNECERFAKYYRSLCPGDWIEKWNEQRENGTFPG   77 (79)
Q Consensus        25 ~Cw~~y~~y~~C~~~~Ged~~~C~~~~~~y~s~CP~~Wve~wde~R~~g~f~~   77 (79)
                      -|......=++||+.++.|.+.|..++..|+. |-..|++.=-++|.+|+-|.
T Consensus        15 PC~~e~~~S~kCL~~n~yDr~~C~~yF~~Yk~-CKk~W~~v~~eRRr~Gi~P~   66 (85)
T 2lqt_A           15 PCLSESDASTRCLDENNYDRERCSTYFLRYKN-CRRFWNSIVMQRRKNGVKPF   66 (85)
T ss_dssp             CCHHHHHHHHHHHHHTTTCTTTTHHHHHHHHH-HHHHHHHHHHHHHTTCCSCS
T ss_pred             ccHHHHHHHHHHHHHcCccHHHHHHHHHHHHH-HHHHHHHHHHHHHHCCCCCC
Confidence            39999999999999999999999999999985 89999999999999999885

>1ei0_A P8MTCP1; helix-turn-helix, disulfide bridges, cell cycle; NMR {Synthetic} SCOP: j.77.1.1

Probab=92.54  E-value=0.11  Score=27.57  Aligned_cols=33  Identities=18%  Similarity=0.447  Sum_probs=27.7

Q ss_pred             HHHHhHHHHHHhhhcCCCchHHHHHHHHHHhhC
Q 034905           26 CFTRYIEFHRCLAAKGEESNECERFAKYYRSLC   58 (79)
Q Consensus        26 Cw~~y~~y~~C~~~~Ged~~~C~~~~~~y~s~C   58 (79)
                      |-..--+|..||..+|-|.+.|..+...++.-|
T Consensus         3 C~~~a~a~q~CL~~n~~d~skCq~~id~l~~Cc   35 (38)
T 1ei0_A            3 CQKQAAEIQKCLQANSYLESKCQAVIQELKKCA   35 (38)
T ss_dssp             SHHHHHHHHHHHHHTTTCGGGTHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHH
Confidence            444556899999999999999999999887655

>1hp8_A HU-P8; leukemia, cysteine motif; NMR {Homo sapiens} SCOP: a.17.1.1 PDB: 2hp8_A

Probab=87.15  E-value=0.58  Score=27.84  Aligned_cols=34  Identities=24%  Similarity=0.556  Sum_probs=28.8

Q ss_pred             HHHHHhHHHHHHhhhcCCCchHHHHHHHHHHhhC
Q 034905           25 HCFTRYIEFHRCLAAKGEESNECERFAKYYRSLC   58 (79)
Q Consensus        25 ~Cw~~y~~y~~C~~~~Ged~~~C~~~~~~y~s~C   58 (79)
                      -|-..--++..||..+|-|.+.|+.+..+|+.-|
T Consensus         6 PC~~~AcaiQ~CL~~N~yd~skCq~~id~L~eCc   39 (68)
T 1hp8_A            6 PCQKQACEIQKCLQANSYMESKCQAVIQELRKCC   39 (68)
T ss_dssp             TTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHH
Confidence            3666677899999999999999999999887643

>2lql_A Coiled-coil-helix-coiled-coil-helix domain-contai protein 5; CHCH domain, mitochondrial import, MIA40-dependent disulfide system; NMR {Homo sapiens}

Probab=85.81  E-value=0.38  Score=30.82  Aligned_cols=37  Identities=14%  Similarity=0.431  Sum_probs=32.0

Q ss_pred             hHHHHHHHHHhHHHHHHhhhcCCCchHHHHHHHHHHh
Q 034905           20 TNQTRHCFTRYIEFHRCLAAKGEESNECERFAKYYRS   56 (79)
Q Consensus        20 ~nq~k~Cw~~y~~y~~C~~~~Ged~~~C~~~~~~y~s   56 (79)
                      +.-.++|-.-+..|+.||+.+..+...|....+.|..
T Consensus        55 ~~I~~~C~~ef~~y~~CL~~n~~~~~~Cr~~~~~f~~   91 (113)
T 2lql_A           55 RQIRQACAQPFEAFEECLRQNEAAVGNCAEHMRRFLQ   91 (113)
T ss_dssp             HHHHHHTHHHHHHHHHHHHHCTTCTTTCCSHHHHHHH
T ss_pred             HHHHHHhHHHHHHHHHHHHHccccHHHHHHHHHHHHH
Confidence            4567899999999999999999999999888777764

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	79
d1v54h_	79	a.51.1.1 (H:) Cytochrome c oxidase subunit h {Cow	5e-40

>d1v54h_ a.51.1.1 (H:) Cytochrome c oxidase subunit h {Cow (Bos taurus) [TaxId: 9913]} Length = 79

class: All alpha proteins
fold: Cytochrome c oxidase subunit h
superfamily: Cytochrome c oxidase subunit h
family: Cytochrome c oxidase subunit h
domain: Cytochrome c oxidase subunit h
species: Cow (Bos taurus) [TaxId: 9913]

 Score =  124 bits (312), Expect = 5e-40
 Identities = 35/76 (46%), Positives = 51/76 (67%), Gaps = 3/76 (3%)

Query: 7  ELKTAPADFRFPTTNQTRHCFTRYIEFHRC---LAAKGEESNECERFAKYYRSLCPGDWI 63
            +TAP D RFP  NQTR+C+  Y++FHRC   + AKG + + CE + + Y+SLCP  W+
Sbjct: 4  NYQTAPFDSRFPNQNQTRNCWQNYLDFHRCEKAMTAKGGDVSVCEWYRRVYKSLCPISWV 63

Query: 64 EKWNEQRENGTFPGPL 79
            W+++R  GTFPG +
Sbjct: 64 STWDDRRAEGTFPGKI 79

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	79
d1v54h_	79	Cytochrome c oxidase subunit h {Cow (Bos taurus) [	100.0

>d1v54h_ a.51.1.1 (H:) Cytochrome c oxidase subunit h {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: Cytochrome c oxidase subunit h
superfamily: Cytochrome c oxidase subunit h
family: Cytochrome c oxidase subunit h
domain: Cytochrome c oxidase subunit h
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=4.5e-46  Score=231.41  Aligned_cols=73  Identities=48%  Similarity=1.116  Sum_probs=70.3

Q ss_pred             cccCCCCCCCCCChHHHHHHHHHhHHHHHHh---hhcCCCchHHHHHHHHHHhhChHHHHHHHHHhhhhCCCCCCC
Q 034905            7 ELKTAPADFRFPTTNQTRHCFTRYIEFHRCL---AAKGEESNECERFAKYYRSLCPGDWIEKWNEQRENGTFPGPL   79 (79)
Q Consensus         7 ~~~t~~~D~RfPn~nq~k~Cw~~y~~y~~C~---~~~Ged~~~C~~~~~~y~s~CP~~Wve~wde~R~~g~f~~~~   79 (79)
                      .++|||+||||||+|||+|||++|+|||+|.   .++|+|+++|++|+++|+||||++||++|||||++|+|||+|
T Consensus         4 ~~~TaP~D~RFPn~NQTrhC~~~Y~dyhrC~K~~~~kGed~~~C~~f~~~y~sLCP~~WiekWdeqr~~GtFpg~i   79 (79)
T d1v54h_           4 NYQTAPFDSRFPNQNQTRNCWQNYLDFHRCEKAMTAKGGDVSVCEWYRRVYKSLCPISWVSTWDDRRAEGTFPGKI   79 (79)
T ss_dssp             CCCSCCCCTTSCSSBCHHHHHHHHHHHHHHHHHHHHHTCCGGGGHHHHHHHHHHSCHHHHHHHHHHHHHTCCCSCC
T ss_pred             cccCCCCCccCCcchhhHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhCCHHHHHHHHHHHHcCCCCCCC
Confidence            4899999999999999999999999999994   467999999999999999999999999999999999999997