Citrus Sinensis ID: 034922

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------
Protein Sequence
MDNSALNSAQMQQFLNQEKEKAMLNEMVAKLTNVCWDKCITSTPGSKFSSSESACLANCAQRYLDMSVIIMKRFQSMQ
Secondary Structure (PSIPRED)
cccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
ccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHcc
Coil and Loop (DISEMBL)
MDNSALNSAQMQQFLNQEKEKAMLNEMVAKLTNVcwdkcitstpgskfsssesaCLANCAQRYLDMSVIIMKRFQSMQ
Flexible Loop (DISEMBL)
mdnsalnsAQMQQFLNQEKEKAMLNEMVAKLTNVCWDKCITStpgskfsssesACLANCAQRYLDMSVIIMKRFQSMQ
Low Complexity Region (SEG)
MDNSALNSAQMQQFLNQEKEKAMLNEMVAKLTNVCWDKCITSTPGSKFSSSESACLANCAQRYLDMSVIIMKRFQSMQ
Disordered region (IsUnstruct)
***********************LNEMVAKLTNVCWDKCITST*********SACLANCAQRYLDMSVIIMKR*****
Disordered Region (DISOPRED)
****************************AKLTNVCWDKCI***********ESACLANCAQRYLDMSVIIMKRFQ***
Disordered Region (DISEMBL)
*********QMQQFLNQEKEKAMLNEMVAKLTNVCWDKCITS***********ACLANCAQRYLDMSVIIMKRFQSMQ
Disordered Region (DISPRO)
******NSAQMQQFLNQEKEKAMLNEMVAKLTNVCWDKCITSTPGSKFSSSESACLANCAQRYLDMSVIIMKRFQSM*
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MDNSALNSAQMQQFLNQEKEKAMLNEMVAKLTNVCWDKCITSTPGSKFSSSESACLANCAQRYLDMSVIIMKRFQSMQ
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	78	2.2.26 [Sep-21-2011]
Q9XGY4	77	Mitochondrial import inne	yes	no	0.974	0.987	0.723	2e-22
P0CR94	88	Mitochondrial import inne	yes	no	0.858	0.761	0.447	4e-12
P0CR95	88	Mitochondrial import inne	N/A	no	0.858	0.761	0.447	4e-12
Q9Y1A3	88	Mitochondrial import inne	yes	no	0.974	0.863	0.363	2e-11
Q6DEM5	90	Mitochondrial import inne	yes	no	0.987	0.855	0.354	1e-10
Q90YI5	90	Mitochondrial import inne	N/A	no	0.948	0.822	0.373	2e-10
Q3ZBS8	97	Mitochondrial import inne	yes	no	0.884	0.711	0.357	6e-10
O60220	97	Mitochondrial import inne	yes	no	0.884	0.711	0.357	6e-10
Q9WVA2	97	Mitochondrial import inne	yes	no	0.884	0.711	0.357	6e-10
Q9WVA1	97	Mitochondrial import inne	yes	no	0.884	0.711	0.357	6e-10

>sp|Q9XGY4|TIM8_ARATH Mitochondrial import inner membrane translocase subunit TIM8 OS=Arabidopsis thaliana GN=TIM8 PE=1 SV=1

 Score =  104 bits (259), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 55/76 (72%), Positives = 67/76 (88%)

Query: 1  MDNSALNSAQMQQFLNQEKEKAMLNEMVAKLTNVCWDKCITSTPGSKFSSSESACLANCA 60
          MD S  N+ ++ QFL QEKE+AM+NEMV+K+T+VCWDKCITS PGSKFSSSES+CL +CA
Sbjct: 1  MDPSMANNPELLQFLAQEKERAMVNEMVSKMTSVCWDKCITSAPGSKFSSSESSCLTHCA 60

Query: 61 QRYLDMSVIIMKRFQS 76
          QRY+DMS+IIMKRF S
Sbjct: 61 QRYMDMSMIIMKRFNS 76

Mitochondrial intermembrane chaperone that participates in the import and insertion of some multi-pass transmembrane proteins into the mitochondrial inner membrane. Also required for the transfer of beta-barrel precursors from the TOM complex to the sorting and assembly machinery (SAM complex) of the outer membrane. Acts as a chaperone-like protein that protects the hydrophobic precursors from aggregation and guide them through the mitochondrial intermembrane space. The TIM8-TIM13 complex mediates the import of some proteins while the predominant TIM9-TIM10 70 kDa complex mediates the import of much more proteins.
Arabidopsis thaliana (taxid: 3702)

>sp|P0CR94|TIM8_CRYNJ Mitochondrial import inner membrane translocase subunit TIM8 OS=Cryptococcus neoformans var. neoformans serotype D (strain JEC21 / ATCC MYA-565) GN=TIM8 PE=3 SV=1

 Score = 70.1 bits (170), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 30/67 (44%), Positives = 45/67 (67%)

Query: 10 QMQQFLNQEKEKAMLNEMVAKLTNVCWDKCITSTPGSKFSSSESACLANCAQRYLDMSVI 69
          +++ FL QE+ KA L   + +LTN CW+ CIT    SKFS SE+ CL NC  R+LD S+ 
Sbjct: 17 ELESFLEQEQAKAKLQASIHELTNTCWNTCITGGISSKFSKSEAQCLENCVDRFLDSSLY 76

Query: 70 IMKRFQS 76
          I+++ ++
Sbjct: 77 IVRQIEA 83

Mitochondrial intermembrane chaperone that participates in the import and insertion of some multi-pass transmembrane proteins into the mitochondrial inner membrane. Also required for the transfer of beta-barrel precursors from the TOM complex to the sorting and assembly machinery (SAM complex) of the outer membrane. Acts as a chaperone-like protein that protects the hydrophobic precursors from aggregation and guide them through the mitochondrial intermembrane space. The TIM8-TIM13 complex is non essential and only mediates the import of few proteins, while the predominant TIM9-TIM10 70 kDa complex is crucial and mediates the import of much more proteins.

Cryptococcus neoformans var. neoformans serotype D (strain JEC21 / ATCC MYA-565) (taxid: 214684)

>sp|P0CR95|TIM8_CRYNB Mitochondrial import inner membrane translocase subunit TIM8 OS=Cryptococcus neoformans var. neoformans serotype D (strain B-3501A) GN=TIM8 PE=3 SV=1

 Score = 70.1 bits (170), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 30/67 (44%), Positives = 45/67 (67%)

Query: 10 QMQQFLNQEKEKAMLNEMVAKLTNVCWDKCITSTPGSKFSSSESACLANCAQRYLDMSVI 69
          +++ FL QE+ KA L   + +LTN CW+ CIT    SKFS SE+ CL NC  R+LD S+ 
Sbjct: 17 ELESFLEQEQAKAKLQASIHELTNTCWNTCITGGISSKFSKSEAQCLENCVDRFLDSSLY 76

Query: 70 IMKRFQS 76
          I+++ ++
Sbjct: 77 IVRQIEA 83

Mitochondrial intermembrane chaperone that participates in the import and insertion of some multi-pass transmembrane proteins into the mitochondrial inner membrane. Also required for the transfer of beta-barrel precursors from the TOM complex to the sorting and assembly machinery (SAM complex) of the outer membrane. Acts as a chaperone-like protein that protects the hydrophobic precursors from aggregation and guide them through the mitochondrial intermembrane space. The TIM8-TIM13 complex is non essential and only mediates the import of few proteins, while the predominant TIM9-TIM10 70 kDa complex is crucial and mediates the import of much more proteins.

Cryptococcus neoformans var. neoformans serotype D (strain B-3501A) (taxid: 283643)

>sp|Q9Y1A3|TIM8_DROME Mitochondrial import inner membrane translocase subunit Tim8 OS=Drosophila melanogaster GN=Tim8 PE=3 SV=1

 Score = 67.8 bits (164), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 28/77 (36%), Positives = 47/77 (61%), Gaps = 1/77 (1%)

Query: 1  MDNSALNSAQMQQFLNQEKEKAMLNEMVAKLTNVCWDKCITSTPGSKFSSSESACLANCA 60
           +N + N  ++Q+FL  EK+KA +N  + +   +CW+KCI   P +K   +   CL+NC 
Sbjct: 4  FENLSGNDKELQEFLLIEKQKAQVNAQIHEFNEICWEKCI-GKPSTKLDHATETCLSNCV 62

Query: 61 QRYLDMSVIIMKRFQSM 77
           R++D S++I +RF  M
Sbjct: 63 DRFIDTSLLITQRFAQM 79

Mitochondrial intermembrane chaperone that participates in the import and insertion of some multi-pass transmembrane proteins into the mitochondrial inner membrane. Also required for the transfer of beta-barrel precursors from the TOM complex to the sorting and assembly machinery (SAM complex) of the outer membrane. Acts as a chaperone-like protein that protects the hydrophobic precursors from aggregation and guide them through the mitochondrial intermembrane space. The Tim8-Tim13 complex mediates the import of some proteins while the predominant Tim9-Tim10 70 kDa complex mediates the import of much more proteins.

Drosophila melanogaster (taxid: 7227)

>sp|Q6DEM5|TIM8A_DANRE Mitochondrial import inner membrane translocase subunit Tim8 A OS=Danio rerio GN=timm8a PE=3 SV=1

 Score = 65.1 bits (157), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 28/79 (35%), Positives = 43/79 (54%), Gaps = 2/79 (2%)

Query: 1  MDNSAL-NSAQMQQFLNQEKEKAMLNEMVAKLTNVCWDKCITSTPGSKFSSSESACLANC 59
          MD   +    Q+QQF+  E +K    ++V ++T VCW+KC+   PG K  S    C  NC
Sbjct: 1  MDTQGVATDPQLQQFIEIESQKQRFQQLVHQMTEVCWEKCM-DKPGPKLDSRTEVCFVNC 59

Query: 60 AQRYLDMSVIIMKRFQSMQ 78
           +R++D S  I+ R +  Q
Sbjct: 60 VERFIDTSQFILNRLEQTQ 78

Mitochondrial intermembrane chaperone that participates in the import and insertion of some multi-pass transmembrane proteins into the mitochondrial inner membrane. Also required for the transfer of beta-barrel precursors from the TOM complex to the sorting and assembly machinery (SAM complex) of the outer membrane. Acts as a chaperone-like protein that protects the hydrophobic precursors from aggregation and guide them through the mitochondrial intermembrane space. The TIMM8-TIMM13 complex mediates the import of some proteins while the predominant TIMM9-TIMM10 70 kDa complex mediates the import of much more proteins.

Danio rerio (taxid: 7955)

>sp|Q90YI5|TIM8A_TAKRU Mitochondrial import inner membrane translocase subunit Tim8 A OS=Takifugu rubripes GN=timm8a PE=3 SV=1

 Score = 64.7 bits (156), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 28/75 (37%), Positives = 40/75 (53%), Gaps = 1/75 (1%)

Query: 4  SALNSAQMQQFLNQEKEKAMLNEMVAKLTNVCWDKCITSTPGSKFSSSESACLANCAQRY 63
           A    Q+QQF+  E +K    ++V  +T VCWDKC+   PG K  S    C  NC +R+
Sbjct: 5  GASADPQLQQFIEIESQKQRFQQLVHHMTEVCWDKCM-DKPGPKLDSRAEMCFVNCVERF 63

Query: 64 LDMSVIIMKRFQSMQ 78
          +D S  I+ R +  Q
Sbjct: 64 IDTSQFILNRLEQTQ 78

Mitochondrial intermembrane chaperone that participates in the import and insertion of some multi-pass transmembrane proteins into the mitochondrial inner membrane. Also required for the transfer of beta-barrel precursors from the TOM complex to the sorting and assembly machinery (SAM complex) of the outer membrane. Acts as a chaperone-like protein that protects the hydrophobic precursors from aggregation and guide them through the mitochondrial intermembrane space. The TIMM8-TIMM13 complex mediates the import of some proteins while the predominant TIMM9-TIMM10 70 kDa complex mediates the import of much more proteins.

Takifugu rubripes (taxid: 31033)

>sp|Q3ZBS8|TIM8A_BOVIN Mitochondrial import inner membrane translocase subunit Tim8 A OS=Bos taurus GN=TIMM8A PE=3 SV=1

 Score = 62.8 bits (151), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 25/70 (35%), Positives = 40/70 (57%), Gaps = 1/70 (1%)

Query: 9  AQMQQFLNQEKEKAMLNEMVAKLTNVCWDKCITSTPGSKFSSSESACLANCAQRYLDMSV 68
           Q+Q F+  E +K    ++V ++T +CW+KC+   PG K  S   AC  NC +R++D S 
Sbjct: 17 PQLQHFIEVETQKQRFQQLVHQMTELCWEKCM-DKPGPKLDSRAEACFVNCVERFIDTSQ 75

Query: 69 IIMKRFQSMQ 78
           I+ R +  Q
Sbjct: 76 FILNRLEQTQ 85

Mitochondrial intermembrane chaperone that participates in the import and insertion of some multi-pass transmembrane proteins into the mitochondrial inner membrane. Also required for the transfer of beta-barrel precursors from the TOM complex to the sorting and assembly machinery (SAM complex) of the outer membrane. Acts as a chaperone-like protein that protects the hydrophobic precursors from aggregation and guide them through the mitochondrial intermembrane space. The TIMM8-TIMM13 complex mediates the import of proteins such as TIMM23, SLC25A12/ARALAR1 and SLC25A13/ARALAR2, while the predominant TIMM9-TIMM10 70 kDa complex mediates the import of much more proteins.

Bos taurus (taxid: 9913)

>sp|O60220|TIM8A_HUMAN Mitochondrial import inner membrane translocase subunit Tim8 A OS=Homo sapiens GN=TIMM8A PE=1 SV=1

 Score = 62.8 bits (151), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 25/70 (35%), Positives = 40/70 (57%), Gaps = 1/70 (1%)

Query: 9  AQMQQFLNQEKEKAMLNEMVAKLTNVCWDKCITSTPGSKFSSSESACLANCAQRYLDMSV 68
           Q+Q F+  E +K    ++V ++T +CW+KC+   PG K  S   AC  NC +R++D S 
Sbjct: 17 PQLQHFIEVETQKQRFQQLVHQMTELCWEKCM-DKPGPKLDSRAEACFVNCVERFIDTSQ 75

Query: 69 IIMKRFQSMQ 78
           I+ R +  Q
Sbjct: 76 FILNRLEQTQ 85

Mitochondrial intermembrane chaperone that participates in the import and insertion of some multi-pass transmembrane proteins into the mitochondrial inner membrane. Also required for the transfer of beta-barrel precursors from the TOM complex to the sorting and assembly machinery (SAM complex) of the outer membrane. Acts as a chaperone-like protein that protects the hydrophobic precursors from aggregation and guide them through the mitochondrial intermembrane space. The TIMM8-TIMM13 complex mediates the import of proteins such as TIMM23, SLC25A12/ARALAR1 and SLC25A13/ARALAR2, while the predominant TIMM9-TIMM10 70 kDa complex mediates the import of much more proteins. Probably necessary for normal neurologic development.

Homo sapiens (taxid: 9606)

>sp|Q9WVA2|TIM8A_MOUSE Mitochondrial import inner membrane translocase subunit Tim8 A OS=Mus musculus GN=Timm8a1 PE=1 SV=1

 Score = 62.8 bits (151), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 25/70 (35%), Positives = 40/70 (57%), Gaps = 1/70 (1%)

Query: 9  AQMQQFLNQEKEKAMLNEMVAKLTNVCWDKCITSTPGSKFSSSESACLANCAQRYLDMSV 68
           Q+Q F+  E +K    ++V ++T +CW+KC+   PG K  S   AC  NC +R++D S 
Sbjct: 17 PQLQHFIEVETQKQRFQQLVHQMTELCWEKCM-DKPGPKLDSRAEACFVNCVERFIDTSQ 75

Query: 69 IIMKRFQSMQ 78
           I+ R +  Q
Sbjct: 76 FILNRLEQTQ 85

Mitochondrial intermembrane chaperone that participates in the import and insertion of some multi-pass transmembrane proteins into the mitochondrial inner membrane. Also required for the transfer of beta-barrel precursors from the TOM complex to the sorting and assembly machinery (SAM complex) of the outer membrane. Acts as a chaperone-like protein that protects the hydrophobic precursors from aggregation and guide them through the mitochondrial intermembrane space. The TIMM8-TIMM13 complex mediates the import of proteins such as TIMM23, SLC25A12/ARALAR1 and SLC25A13/ARALAR2, while the predominant TIMM9-TIMM10 70 kDa complex mediates the import of much more proteins.

Mus musculus (taxid: 10090)

>sp|Q9WVA1|TIM8A_RAT Mitochondrial import inner membrane translocase subunit Tim8 A OS=Rattus norvegicus GN=Timm8a PE=1 SV=1

 Score = 62.8 bits (151), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 25/70 (35%), Positives = 40/70 (57%), Gaps = 1/70 (1%)

Query: 9  AQMQQFLNQEKEKAMLNEMVAKLTNVCWDKCITSTPGSKFSSSESACLANCAQRYLDMSV 68
           Q+Q F+  E +K    ++V ++T +CW+KC+   PG K  S   AC  NC +R++D S 
Sbjct: 17 PQLQHFIEVETQKQRFQQLVHQMTELCWEKCM-DKPGPKLDSRAEACFVNCVERFIDTSQ 75

Query: 69 IIMKRFQSMQ 78
           I+ R +  Q
Sbjct: 76 FILNRLEQTQ 85

Mitochondrial intermembrane chaperone that participates in the import and insertion of some multi-pass transmembrane proteins into the mitochondrial inner membrane. Also required for the transfer of beta-barrel precursors from the TOM complex to the sorting and assembly machinery (SAM complex) of the outer membrane. Acts as a chaperone-like protein that protects the hydrophobic precursors from aggregation and guide them through the mitochondrial intermembrane space. The TIMM8-TIMM13 complex mediates the import of proteins such as TIMM23, SLC25A12/ARALAR1 and SLC25A13/ARALAR2, while the predominant TIMM9-TIMM10 70 kDa complex mediates the import of much more proteins.

Rattus norvegicus (taxid: 10116)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	78
282848242	78	mitochondrial import inner membrane tran	1.0	1.0	0.858	2e-32
225456424	77	PREDICTED: mitochondrial import inner me	0.974	0.987	0.828	3e-31
225451533	78	PREDICTED: mitochondrial import inner me	1.0	1.0	0.807	4e-31
255630849	78	unknown [Glycine max]	1.0	1.0	0.730	1e-28
449440518	77	PREDICTED: mitochondrial import inner me	0.961	0.974	0.746	2e-27
255540117	78	translocase of inner mitochondrial membr	1.0	1.0	0.833	6e-27
356508843	78	PREDICTED: mitochondrial import inner me	1.0	1.0	0.730	6e-27
5107157	71	small zinc finger-like protein [Malus x	0.910	1.0	0.788	8e-27
356516513	78	PREDICTED: mitochondrial import inner me	1.0	1.0	0.717	2e-26
116794151	77	unknown [Picea sitchensis] gi|148910560|	0.987	1.0	0.705	6e-26

>gi|282848242|gb|ADB02902.1| mitochondrial import inner membrane translocase subunit Tim8/small zinc finger-like protein [Jatropha curcas]

 Score =  142 bits (359), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 67/78 (85%), Positives = 74/78 (94%)

Query: 1  MDNSALNSAQMQQFLNQEKEKAMLNEMVAKLTNVCWDKCITSTPGSKFSSSESACLANCA 60
          MD S LN+A+MQQFLNQEKEKAM+NEMVAKLT+ CWDKCITSTPGSKFSSSESACL+NCA
Sbjct: 1  MDPSTLNNAEMQQFLNQEKEKAMVNEMVAKLTSECWDKCITSTPGSKFSSSESACLSNCA 60

Query: 61 QRYLDMSVIIMKRFQSMQ 78
          QRY+DMS+IIMKRFQSM 
Sbjct: 61 QRYMDMSLIIMKRFQSMH 78

Source: Jatropha curcas

Species: Jatropha curcas

Genus: Jatropha

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225456424|ref|XP_002284270.1| PREDICTED: mitochondrial import inner membrane translocase subunit Tim8 [Vitis vinifera] gi|297734470|emb|CBI15717.3| unnamed protein product [Vitis vinifera]

 Score =  139 bits (349), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 63/76 (82%), Positives = 73/76 (96%)

Query: 3  NSALNSAQMQQFLNQEKEKAMLNEMVAKLTNVCWDKCITSTPGSKFSSSESACLANCAQR 62
          +S+LNSA++Q F++QEKEKAM+NEMVAKLT VCWDKCITSTPGSKFSSSES CL+NCAQR
Sbjct: 2  DSSLNSAELQHFISQEKEKAMVNEMVAKLTTVCWDKCITSTPGSKFSSSESTCLSNCAQR 61

Query: 63 YLDMSVIIMKRFQSMQ 78
          Y+DMS+IIMKRFQSMQ
Sbjct: 62 YMDMSLIIMKRFQSMQ 77

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225451533|ref|XP_002273409.1| PREDICTED: mitochondrial import inner membrane translocase subunit Tim8 [Vitis vinifera] gi|147820258|emb|CAN71477.1| hypothetical protein VITISV_038620 [Vitis vinifera] gi|296082306|emb|CBI21311.3| unnamed protein product [Vitis vinifera]

 Score =  138 bits (348), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 63/78 (80%), Positives = 73/78 (93%)

Query: 1  MDNSALNSAQMQQFLNQEKEKAMLNEMVAKLTNVCWDKCITSTPGSKFSSSESACLANCA 60
          MD+S LNSA++QQFL+QEK+KAMLNEMVAK+TNVCWDKCIT TPGSKFSSSESACL+ CA
Sbjct: 1  MDSSHLNSAELQQFLSQEKKKAMLNEMVAKITNVCWDKCITGTPGSKFSSSESACLSKCA 60

Query: 61 QRYLDMSVIIMKRFQSMQ 78
          QRY+D+S+ IM RFQSMQ
Sbjct: 61 QRYMDLSITIMTRFQSMQ 78

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255630849|gb|ACU15787.1| unknown [Glycine max]

 Score =  130 bits (327), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 57/78 (73%), Positives = 70/78 (89%)

Query: 1  MDNSALNSAQMQQFLNQEKEKAMLNEMVAKLTNVCWDKCITSTPGSKFSSSESACLANCA 60
          MD S +NS +++QFL++EKEKAM NE+VAKLT++CWDKCI STPGSKFSSSE+ CL NC+
Sbjct: 1  MDTSRVNSTELEQFLSKEKEKAMANEIVAKLTHICWDKCIASTPGSKFSSSETTCLTNCS 60

Query: 61 QRYLDMSVIIMKRFQSMQ 78
          QRY+DMS+IIMKRFQSM 
Sbjct: 61 QRYMDMSMIIMKRFQSMH 78

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449440518|ref|XP_004138031.1| PREDICTED: mitochondrial import inner membrane translocase subunit Tim8-like [Cucumis sativus] gi|449532151|ref|XP_004173046.1| PREDICTED: mitochondrial import inner membrane translocase subunit Tim8-like [Cucumis sativus]

 Score =  126 bits (317), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 56/75 (74%), Positives = 69/75 (92%)

Query: 1  MDNSALNSAQMQQFLNQEKEKAMLNEMVAKLTNVCWDKCITSTPGSKFSSSESACLANCA 60
          MD+S+LNS ++  F+N+EK++AM+ EMVAKLT+VCWDKCIT TPGSKFSSSES CL+NCA
Sbjct: 1  MDSSSLNSPELMNFINEEKQRAMVAEMVAKLTSVCWDKCITGTPGSKFSSSESNCLSNCA 60

Query: 61 QRYLDMSVIIMKRFQ 75
          QRY+DMS+IIMKRFQ
Sbjct: 61 QRYMDMSIIIMKRFQ 75

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255540117|ref|XP_002511123.1| translocase of inner mitochondrial membrane, putative [Ricinus communis] gi|223550238|gb|EEF51725.1| translocase of inner mitochondrial membrane, putative [Ricinus communis]

 Score =  124 bits (312), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 65/78 (83%), Positives = 73/78 (93%)

Query: 1  MDNSALNSAQMQQFLNQEKEKAMLNEMVAKLTNVCWDKCITSTPGSKFSSSESACLANCA 60
          MD SAL+SA+MQ+FLNQEKEKAM+NEMVAKLT+ CWDKCITSTPGSKFSSSES+CL NC 
Sbjct: 1  MDTSALDSAEMQRFLNQEKEKAMVNEMVAKLTSACWDKCITSTPGSKFSSSESSCLTNCT 60

Query: 61 QRYLDMSVIIMKRFQSMQ 78
          QRY+DMS+IIMKRFQSM 
Sbjct: 61 QRYMDMSLIIMKRFQSMH 78

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356508843|ref|XP_003523163.1| PREDICTED: mitochondrial import inner membrane translocase subunit Tim8-like [Glycine max]

 Score =  124 bits (311), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 57/78 (73%), Positives = 71/78 (91%)

Query: 1  MDNSALNSAQMQQFLNQEKEKAMLNEMVAKLTNVCWDKCITSTPGSKFSSSESACLANCA 60
          MD S LNSA+MQ+F ++E+++AM+NEMVAKLT+ CWDKCIT TPG+KFSSSES CL+NCA
Sbjct: 1  MDLSDLNSAEMQKFYSEEQQRAMVNEMVAKLTSECWDKCITGTPGNKFSSSESNCLSNCA 60

Query: 61 QRYLDMSVIIMKRFQSMQ 78
           RYL+MS++IMKRFQSMQ
Sbjct: 61 HRYLEMSMLIMKRFQSMQ 78

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|5107157|gb|AAD39991.1|AF150084_1 small zinc finger-like protein [Malus x domestica]

 Score =  124 bits (311), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 56/71 (78%), Positives = 65/71 (91%)

Query: 1  MDNSALNSAQMQQFLNQEKEKAMLNEMVAKLTNVCWDKCITSTPGSKFSSSESACLANCA 60
          MD SA+N+ ++  F+NQEKE+AM+NEMV KLTNVCWDKCIT TPGSKFSSSESACLANCA
Sbjct: 1  MDPSAMNNPELLNFINQEKERAMVNEMVGKLTNVCWDKCITGTPGSKFSSSESACLANCA 60

Query: 61 QRYLDMSVIIM 71
          +RYLDMS+IIM
Sbjct: 61 RRYLDMSMIIM 71

Source: Malus x domestica

Species: Malus x domestica

Genus: Malus

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356516513|ref|XP_003526938.1| PREDICTED: mitochondrial import inner membrane translocase subunit Tim8 [Glycine max] gi|255629105|gb|ACU14897.1| unknown [Glycine max]

 Score =  122 bits (306), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 56/78 (71%), Positives = 70/78 (89%)

Query: 1  MDNSALNSAQMQQFLNQEKEKAMLNEMVAKLTNVCWDKCITSTPGSKFSSSESACLANCA 60
          MD S LNSA +Q+F ++E+++AM+NEMVAKLT+ CWDKCIT TPG+KFSSSES CL+NCA
Sbjct: 1  MDLSDLNSADLQKFYSEEQQRAMVNEMVAKLTSECWDKCITGTPGNKFSSSESNCLSNCA 60

Query: 61 QRYLDMSVIIMKRFQSMQ 78
          QRYL+MS++IMKRFQ MQ
Sbjct: 61 QRYLEMSMLIMKRFQGMQ 78

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|116794151|gb|ABK27025.1| unknown [Picea sitchensis] gi|148910560|gb|ABR18352.1| unknown [Picea sitchensis]

 Score =  121 bits (303), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 55/78 (70%), Positives = 68/78 (87%), Gaps = 1/78 (1%)

Query: 1  MDNSALNSAQMQQFLNQEKEKAMLNEMVAKLTNVCWDKCITSTPGSKFSSSESACLANCA 60
          MD+ ++ S+ +Q FL QEK+KAM+NE+V KLT+VCWDKCITS PGSKFSSSE+ACL NCA
Sbjct: 1  MDSPSM-SSDLQSFLEQEKQKAMMNELVGKLTDVCWDKCITSAPGSKFSSSETACLTNCA 59

Query: 61 QRYLDMSVIIMKRFQSMQ 78
          QR+LDMS II++RFQSM 
Sbjct: 60 QRFLDMSAIIIRRFQSMH 77

Source: Picea sitchensis

Species: Picea sitchensis

Genus: Picea

Family: Pinaceae

Order: Coniferales

Class: Coniferopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	78
TAIR|locus:2157931	77	TIM8 "AT5G50810" [Arabidopsis	0.974	0.987	0.723	1.2e-26
FB|FBgn0027359	88	Tim8 "Tim8" [Drosophila melano	0.961	0.852	0.368	1.5e-12
ZFIN|ZDB-GENE-040801-158	90	timm8a "translocase of inner m	0.987	0.855	0.354	1.3e-11
ASPGD|ASPL0000076045	88	AN11136 [Emericella nidulans (	1.0	0.886	0.390	2.8e-11
UNIPROTKB|Q3ZBS8	97	TIMM8A "Mitochondrial import i	0.987	0.793	0.348	4.5e-11
UNIPROTKB|E2RPC9	97	TIMM8A "Uncharacterized protei	0.987	0.793	0.348	4.5e-11
UNIPROTKB|O60220	97	TIMM8A "Mitochondrial import i	0.987	0.793	0.348	4.5e-11
ZFIN|ZDB-GENE-031019-1	95	timm8b "translocase of inner m	0.884	0.726	0.385	4.5e-11
RGD|621801	97	Timm8a1 "translocase of inner	0.871	0.701	0.362	5.8e-11
UNIPROTKB|F1S1L1	97	LOC100517443 "Uncharacterized	0.987	0.793	0.337	9.4e-11

TAIR|locus:2157931 TIM8 "AT5G50810" [Arabidopsis thaliana (taxid:3702)]

 Score = 300 (110.7 bits), Expect = 1.2e-26, P = 1.2e-26
 Identities = 55/76 (72%), Positives = 67/76 (88%)

Query:     1 MDNSALNSAQMQQFLNQEKEKAMLNEMVAKLTNVCWDKCITSTPGSKFSSSESACLANCA 60
             MD S  N+ ++ QFL QEKE+AM+NEMV+K+T+VCWDKCITS PGSKFSSSES+CL +CA
Sbjct:     1 MDPSMANNPELLQFLAQEKERAMVNEMVSKMTSVCWDKCITSAPGSKFSSSESSCLTHCA 60

Query:    61 QRYLDMSVIIMKRFQS 76
             QRY+DMS+IIMKRF S
Sbjct:    61 QRYMDMSMIIMKRFNS 76

GO:0005743 "mitochondrial inner membrane" evidence=ISS

GO:0006626 "protein targeting to mitochondrion" evidence=IEA;ISS

GO:0009507 "chloroplast" evidence=ISM

GO:0015450 "P-P-bond-hydrolysis-driven protein transmembrane transporter activity" evidence=ISS

GO:0042719 "mitochondrial intermembrane space protein transporter complex" evidence=IEA

GO:0045039 "protein import into mitochondrial inner membrane" evidence=IEA

GO:0005739 "mitochondrion" evidence=IDA

GO:0005758 "mitochondrial intermembrane space" evidence=IDA

GO:0001510 "RNA methylation" evidence=RCA

GO:0009853 "photorespiration" evidence=RCA

FB|FBgn0027359 Tim8 "Tim8" [Drosophila melanogaster (taxid:7227)]

 Score = 167 (63.8 bits), Expect = 1.5e-12, P = 1.5e-12
 Identities = 28/76 (36%), Positives = 47/76 (61%)

Query:     2 DNSALNSAQMQQFLNQEKEKAMLNEMVAKLTNVCWDKCITSTPGSKFSSSESACLANCAQ 61
             +N + N  ++Q+FL  EK+KA +N  + +   +CW+KCI   P +K   +   CL+NC  
Sbjct:     5 ENLSGNDKELQEFLLIEKQKAQVNAQIHEFNEICWEKCI-GKPSTKLDHATETCLSNCVD 63

Query:    62 RYLDMSVIIMKRFQSM 77
             R++D S++I +RF  M
Sbjct:    64 RFIDTSLLITQRFAQM 79

GO:0005744 "mitochondrial inner membrane presequence translocase complex" evidence=ISS;NAS

GO:0015031 "protein transport" evidence=ISS

GO:0015450 "P-P-bond-hydrolysis-driven protein transmembrane transporter activity" evidence=ISS

GO:0006626 "protein targeting to mitochondrion" evidence=ISS

ZFIN|ZDB-GENE-040801-158 timm8a "translocase of inner mitochondrial membrane 8 homolog A (yeast)" [Danio rerio (taxid:7955)]

 Score = 158 (60.7 bits), Expect = 1.3e-11, P = 1.3e-11
 Identities = 28/79 (35%), Positives = 43/79 (54%)

Query:     1 MDNSAL-NSAQMQQFLNQEKEKAMLNEMVAKLTNVCWDKCITSTPGSKFSSSESACLANC 59
             MD   +    Q+QQF+  E +K    ++V ++T VCW+KC+   PG K  S    C  NC
Sbjct:     1 MDTQGVATDPQLQQFIEIESQKQRFQQLVHQMTEVCWEKCMDK-PGPKLDSRTEVCFVNC 59

Query:    60 AQRYLDMSVIIMKRFQSMQ 78
              +R++D S  I+ R +  Q
Sbjct:    60 VERFIDTSQFILNRLEQTQ 78

GO:0046872 "metal ion binding" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0005743 "mitochondrial inner membrane" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

ASPGD|ASPL0000076045 AN11136 [Emericella nidulans (taxid:162425)]

 Score = 155 (59.6 bits), Expect = 2.8e-11, P = 2.8e-11
 Identities = 32/82 (39%), Positives = 46/82 (56%)

Query:     1 MDNSALNSA---QMQQFLNQEKEKAMLNEMVAKLTNVCWDKCITS-TPGSKFSSSESACL 56
             +D S L+ A   ++ Q L  E +KA + + V  L + CW KCITS    S+   SE AC 
Sbjct:     5 LDVSKLSEADQKELHQILQTESQKAAIQQNVHHLADACWKKCITSKVTSSRLEKSEEACA 64

Query:    57 ANCAQRYLDMSVIIMKRFQSMQ 78
              NC  R+LD +  ++K  Q+MQ
Sbjct:    65 MNCVDRWLDTNNAVLKHLQAMQ 86

GO:0045039 "protein import into mitochondrial inner membrane" evidence=IEA

GO:0008565 "protein transporter activity" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0042719 "mitochondrial intermembrane space protein transporter complex" evidence=IEA

UNIPROTKB|Q3ZBS8 TIMM8A "Mitochondrial import inner membrane translocase subunit Tim8 A" [Bos taurus (taxid:9913)]

 Score = 153 (58.9 bits), Expect = 4.5e-11, P = 4.5e-11
 Identities = 30/86 (34%), Positives = 48/86 (55%)

Query:     1 MDNSALNSA--------QMQQFLNQEKEKAMLNEMVAKLTNVCWDKCITSTPGSKFSSSE 52
             MD+S+ +SA        Q+Q F+  E +K    ++V ++T +CW+KC+   PG K  S  
Sbjct:     1 MDSSSSSSAAGLGSVDPQLQHFIEVETQKQRFQQLVHQMTELCWEKCMDK-PGPKLDSRA 59

Query:    53 SACLANCAQRYLDMSVIIMKRFQSMQ 78
              AC  NC +R++D S  I+ R +  Q
Sbjct:    60 EACFVNCVERFIDTSQFILNRLEQTQ 85

GO:0005739 "mitochondrion" evidence=ISS

GO:0005743 "mitochondrial inner membrane" evidence=IEA

GO:0005758 "mitochondrial intermembrane space" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

UNIPROTKB|E2RPC9 TIMM8A "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 153 (58.9 bits), Expect = 4.5e-11, P = 4.5e-11
 Identities = 30/86 (34%), Positives = 48/86 (55%)

Query:     1 MDNSALNSA--------QMQQFLNQEKEKAMLNEMVAKLTNVCWDKCITSTPGSKFSSSE 52
             MD+S+ +SA        Q+Q F+  E +K    ++V ++T +CW+KC+   PG K  S  
Sbjct:     1 MDSSSSSSAAGLGSVDPQLQHFIEVETQKQRFQQLVHQMTELCWEKCMDK-PGPKLDSRA 59

Query:    53 SACLANCAQRYLDMSVIIMKRFQSMQ 78
              AC  NC +R++D S  I+ R +  Q
Sbjct:    60 EACFVNCVERFIDTSQFILNRLEQTQ 85

GO:0005758 "mitochondrial intermembrane space" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0005743 "mitochondrial inner membrane" evidence=IEA

UNIPROTKB|O60220 TIMM8A "Mitochondrial import inner membrane translocase subunit Tim8 A" [Homo sapiens (taxid:9606)]

 Score = 153 (58.9 bits), Expect = 4.5e-11, P = 4.5e-11
 Identities = 30/86 (34%), Positives = 48/86 (55%)

Query:     1 MDNSALNSA--------QMQQFLNQEKEKAMLNEMVAKLTNVCWDKCITSTPGSKFSSSE 52
             MD+S+ +SA        Q+Q F+  E +K    ++V ++T +CW+KC+   PG K  S  
Sbjct:     1 MDSSSSSSAAGLGAVDPQLQHFIEVETQKQRFQQLVHQMTELCWEKCMDK-PGPKLDSRA 59

Query:    53 SACLANCAQRYLDMSVIIMKRFQSMQ 78
              AC  NC +R++D S  I+ R +  Q
Sbjct:    60 EACFVNCVERFIDTSQFILNRLEQTQ 85

GO:0046872 "metal ion binding" evidence=IEA

GO:0005743 "mitochondrial inner membrane" evidence=IEA

GO:0007399 "nervous system development" evidence=TAS

GO:0006626 "protein targeting to mitochondrion" evidence=TAS

GO:0044267 "cellular protein metabolic process" evidence=TAS

GO:0005758 "mitochondrial intermembrane space" evidence=IDA

GO:0072321 "chaperone-mediated protein transport" evidence=TAS

GO:0005739 "mitochondrion" evidence=IDA

ZFIN|ZDB-GENE-031019-1 timm8b "translocase of inner mitochondrial membrane 8 homolog B (yeast)" [Danio rerio (taxid:7955)]

 Score = 153 (58.9 bits), Expect = 4.5e-11, P = 4.5e-11
 Identities = 27/70 (38%), Positives = 41/70 (58%)

Query:     8 SAQMQQFLNQEKEKAMLNEMVAKLTNVCWDKCITSTPGSKFSSSESACLANCAQRYLDMS 67
             +A++Q+ L  E++KA     V   T+VCWDKC+   P SK  S    CL +C +R++D +
Sbjct:    21 AAELQRMLAVEQQKAQFQAQVHNFTDVCWDKCVDK-PSSKLDSRTETCLVSCVERFIDTT 79

Query:    68 VIIMKRFQSM 77
             + I  RF  M
Sbjct:    80 LTITNRFTQM 89

GO:0006810 "transport" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

RGD|621801 Timm8a1 "translocase of inner mitochondrial membrane 8 homolog a1 (yeast)" [Rattus norvegicus (taxid:10116)]

 Score = 152 (58.6 bits), Expect = 5.8e-11, P = 5.8e-11
 Identities = 25/69 (36%), Positives = 40/69 (57%)

Query:    10 QMQQFLNQEKEKAMLNEMVAKLTNVCWDKCITSTPGSKFSSSESACLANCAQRYLDMSVI 69
             Q+Q F+  E +K    ++V ++T +CW+KC+   PG K  S   AC  NC +R++D S  
Sbjct:    18 QLQHFIEVETQKQRFQQLVHQMTELCWEKCMDK-PGPKLDSRAEACFVNCVERFIDTSQF 76

Query:    70 IMKRFQSMQ 78
             I+ R +  Q
Sbjct:    77 ILNRLEQTQ 85

GO:0005515 "protein binding" evidence=IPI

GO:0005739 "mitochondrion" evidence=ISO;IDA

GO:0005743 "mitochondrial inner membrane" evidence=IEA;TAS

GO:0005758 "mitochondrial intermembrane space" evidence=ISO

GO:0006626 "protein targeting to mitochondrion" evidence=IDA

GO:0008270 "zinc ion binding" evidence=IDA

GO:0008565 "protein transporter activity" evidence=IEA

GO:0045039 "protein import into mitochondrial inner membrane" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

UNIPROTKB|F1S1L1 LOC100517443 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 150 (57.9 bits), Expect = 9.4e-11, P = 9.4e-11
 Identities = 29/86 (33%), Positives = 48/86 (55%)

Query:     1 MDNSALNSA--------QMQQFLNQEKEKAMLNEMVAKLTNVCWDKCITSTPGSKFSSSE 52
             MD+S+ +SA        Q+Q F+  E +K    ++V ++T +CW+KC+   PG K  +  
Sbjct:     1 MDSSSSSSAAGLGSVDPQLQHFIEVETQKQRFQQLVHQMTELCWEKCMDK-PGPKLDNRA 59

Query:    53 SACLANCAQRYLDMSVIIMKRFQSMQ 78
              AC  NC +R++D S  I+ R +  Q
Sbjct:    60 EACFVNCVERFIDTSQFILNRLEQTQ 85

GO:0005758 "mitochondrial intermembrane space" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0005743 "mitochondrial inner membrane" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q6DEM5	TIM8A_DANRE	No assigned EC number	0.3544	0.9871	0.8555	yes	no
Q9Y0V6	TIM10_CAEEL	No assigned EC number	0.375	0.8846	0.8023	yes	no
Q9XGY4	TIM8_ARATH	No assigned EC number	0.7236	0.9743	0.9870	yes	no
Q9Y1A3	TIM8_DROME	No assigned EC number	0.3636	0.9743	0.8636	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	GSVIVG00017994001	SubName- Full=Chromosome chr17 scaffold_16, whole genome shotgun sequence; (77 aa)
		(Vitis vinifera)
Predicted Functional Partners:
	GSVIVG00021319001	SubName- Full=Chromosome chr8 scaffold_23, whole genome shotgun sequence; (93 aa)				•		•	•		0.496
	GSVIVG00024321001	SubName- Full=Chromosome chr6 scaffold_3, whole genome shotgun sequence; (93 aa)				•		•	•		0.490
	GSVIVG00018552001	SubName- Full=Chromosome chr13 scaffold_17, whole genome shotgun sequence; (155 aa)				•					0.441
	GSVIVG00029522001	SubName- Full=Chromosome chr13 scaffold_48, whole genome shotgun sequence; (129 aa)				•					0.435
	GSVIVG00026857001	RecName- Full=60S ribosomal protein L36; (110 aa)				•					0.424
	GSVIVG00021594001	SubName- Full=Chromosome chr8 scaffold_23, whole genome shotgun sequence; (80 aa)				•					0.412
	GSVIVG00024037001	SubName- Full=Chromosome chr6 scaffold_3, whole genome shotgun sequence; (170 aa)				•		•	•		0.410

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	78
pfam02953	66	pfam02953, zf-Tim10_DDP, Tim10/DDP family zinc fin	1e-23

>gnl|CDD|202484 pfam02953, zf-Tim10_DDP, Tim10/DDP family zinc finger

 Score = 84.2 bits (209), Expect = 1e-23
 Identities = 29/66 (43%), Positives = 39/66 (59%)

Query: 12 QQFLNQEKEKAMLNEMVAKLTNVCWDKCITSTPGSKFSSSESACLANCAQRYLDMSVIIM 71
          QQ L QE +KA   E++ KLT  C+ KC+T  PGS  S  E +CL  C ++YLD +  + 
Sbjct: 1  QQQLMQELQKANFQELINKLTENCFKKCVTKFPGSSLSKGEESCLDRCVEKYLDANNRVS 60

Query: 72 KRFQSM 77
          KR Q  
Sbjct: 61 KRLQER 66

Putative zinc binding domain with four conserved cysteine residues. This domain is found in the human disease protein TIMM8A. Members of this family such as Tim9 and Tim10 are involved in mitochondrial protein import. Members of this family seem to be localised to the mitochondrial intermembrane space. Length = 66

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	78
KOG3489	86	consensus Mitochondrial import inner membrane tran	99.95
PF02953	66	zf-Tim10_DDP: Tim10/DDP family zinc finger; InterP	99.94
KOG1733	97	consensus Mitochondrial import inner membrane tran	99.9
KOG3480	90	consensus Mitochondrial import inner membrane tran	99.85
KOG3479	83	consensus Mitochondrial import inner membrane tran	99.85
KOG3377	143	consensus Uncharacterized conserved protein [Funct	94.78
PF05811	131	DUF842: Eukaryotic protein of unknown function (DU	94.47
PF05892	194	Tricho_coat: Trichovirus coat protein; InterPro: I	83.45

>KOG3489 consensus Mitochondrial import inner membrane translocase, subunit TIM8 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.95  E-value=7.8e-28  Score=145.92  Aligned_cols=72  Identities=47%  Similarity=0.943  Sum_probs=69.0

Q ss_pred             HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCChhHhHHHHHHHHHHHHHHHHHHHHHhhc
Q 034922            5 ALNSAQMQQFLNQEKEKAMLNEMVAKLTNVCWDKCITSTPGSKFSSSESACLANCAQRYLDMSVIIMKRFQSM   77 (78)
Q Consensus         5 ~~~~~e~~~~l~~e~~~~~~~~~~~~lt~~Cf~kCv~~~~~~~L~~~E~~Ci~~Cv~ky~~~~~~v~~~~~e~   77 (78)
                      +++++|+++||+.|++++.+++++|.+|+.||+|||. .|+++||+.|++|+.|||+||||++.+|.+||+.+
T Consensus         8 ~~~~~el~~fl~~E~qk~k~~~~VHqft~~CWdKCi~-~~~sklds~~e~ClsnCV~RfiDts~~I~~r~~~~   79 (86)
T KOG3489|consen    8 DANDPELQQFLEAETQKQKFQEQVHQFTEICWDKCIE-KPGSKLDSSEETCLSNCVNRFIDTSLFIVKRLAQM   79 (86)
T ss_pred             ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CCcccccchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5789999999999999999999999999999999996 77899999999999999999999999999999875

>PF02953 zf-Tim10_DDP: Tim10/DDP family zinc finger; InterPro: IPR004217 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=99.94  E-value=1.1e-26  Score=134.92  Aligned_cols=65  Identities=43%  Similarity=0.798  Sum_probs=59.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCChhHhHHHHHHHHHHHHHHHHHHHHHhhc
Q 034922           13 QFLNQEKEKAMLNEMVAKLTNVCWDKCITSTPGSKFSSSESACLANCAQRYLDMSVIIMKRFQSM   77 (78)
Q Consensus        13 ~~l~~e~~~~~~~~~~~~lt~~Cf~kCv~~~~~~~L~~~E~~Ci~~Cv~ky~~~~~~v~~~~~e~   77 (78)
                      ++++++++++.++++++++++.||+|||+++|+++|+++|.+||+||++||++++.+|+++|+++
T Consensus         2 ~~~~~~~q~~~~~~~~~~~t~~Cf~kCv~~~~~~~L~~~E~~Ci~~C~~ky~~~~~~v~~~~~~~   66 (66)
T PF02953_consen    2 QQLMQEQQMKDFQELFNKLTERCFDKCVTKFPSSSLSSKEESCIDNCVDKYIDTNQFVSKRFQQM   66 (66)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHS-TTSSSS--HHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence            57889999999999999999999999999889999999999999999999999999999999875

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a putative zinc binding domain with four conserved cysteine residues. Members of this family include subunits 8, 9, 10 and 13 of the mitochondrial inner membrane translocase complex, which are involved in mitochondrial protein import [, ]. Defects in TIM8 are the cause of 2 human syndromes: Mohr-Tranebjaerg syndrome (MTS) [MIM:304700]; also known as dystonia-deafness syndrome (DDS) or X-linked progressive deafness type 1 (DFN-1). It is a recessive neurodegenerative syndrome characterised by postlingual progressive sensorineural deafness as the first presenting symptom in early childhood, followed by progressive dystonia, spasticity, dysphagia, mental deterioration, paranoia and cortical blindness. Jensen syndrome [MIM:311150]; also known as opticoacoustic nerve atrophy with dementia. This X-linked disease is characterised by deafness, blindness and muscle weakness. The small alpha helical proteins Tim8 and Tim13 assemble into a hexameric complex which can bind Tim23 as its substrate and chaperone the hydrophobic Tim23 across the aqueous membrane space []. More information on zinc fingers can be found at Protein of the Month: Zinc Fingers [].; GO: 0006626 protein targeting to mitochondrion, 0045039 protein import into mitochondrial inner membrane, 0042719 mitochondrial intermembrane space protein transporter complex; PDB: 2BSK_B 3CJH_A 3DXR_A.

>KOG1733 consensus Mitochondrial import inner membrane translocase, subunit TIM13 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.90  E-value=2.9e-23  Score=127.72  Aligned_cols=69  Identities=33%  Similarity=0.695  Sum_probs=63.8

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCChhHhHHHHHHHHHHHHHHHHHHHHHh
Q 034922            6 LNSAQMQQFLNQEKEKAMLNEMVAKLTNVCWDKCITSTPGSKFSSSESACLANCAQRYLDMSVIIMKRFQ   75 (78)
Q Consensus         6 ~~~~e~~~~l~~e~~~~~~~~~~~~lt~~Cf~kCv~~~~~~~L~~~E~~Ci~~Cv~ky~~~~~~v~~~~~   75 (78)
                      ....++..++.++.+.++.++++++|+++||+|||+ .|+++|++.|.+||++|++|||++|+.|++.+.
T Consensus        17 ~~~~~~m~qVkqqlAvAnAqeLv~kisekCf~KCit-~PGssl~~~e~~Cis~CmdRyMdawniVSrty~   85 (97)
T KOG1733|consen   17 TTEGELMNQVKQQLAVANAQELVSKISEKCFDKCIT-KPGSSLDSSEKSCISRCMDRYMDAWNIVSRTYI   85 (97)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CCCcccCcchHHHHHHHHHHHHHHHHHHHHHHH
Confidence            444489999999999999999999999999999997 999999999999999999999999999987654

>KOG3480 consensus Mitochondrial import inner membrane translocase, subunits TIM10/TIM12 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.85  E-value=6e-21  Score=116.36  Aligned_cols=62  Identities=34%  Similarity=0.680  Sum_probs=59.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhc-CCCCCCCChhHhHHHHHHHHHHHHHHHHHHHHHhhc
Q 034922           16 NQEKEKAMLNEMVAKLTNVCWDKCIT-STPGSKFSSSESACLANCAQRYLDMSVIIMKRFQSM   77 (78)
Q Consensus        16 ~~e~~~~~~~~~~~~lt~~Cf~kCv~-~~~~~~L~~~E~~Ci~~Cv~ky~~~~~~v~~~~~e~   77 (78)
                      +++++.+.+.++||+|+..|++|||+ .|..+.|+++|..||||||.||++++..|+++++.+
T Consensus        16 ~Ae~E~emm~d~fNrl~~tC~~KCI~~~y~EaeLtKGE~~CiDRCVaKy~~~n~~vG~~lq~~   78 (90)
T KOG3480|consen   16 MAELEVEMMSDMFNRLTNTCHKKCIPPRYKEAELTKGESVCIDRCVAKYLDVNEKVGKKLQAM   78 (90)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCCcccccccccCchhhHHHHHHHHHHHHHHHHHHHHHhc
Confidence            78999999999999999999999999 689999999999999999999999999999999875

>KOG3479 consensus Mitochondrial import inner membrane translocase, subunit TIM9 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.85  E-value=4.5e-21  Score=115.94  Aligned_cols=61  Identities=28%  Similarity=0.614  Sum_probs=55.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCChhHhHHHHHHHHHHHHHHHHHHHHHhhcC
Q 034922           18 EKEKAMLNEMVAKLTNVCWDKCITSTPGSKFSSSESACLANCAQRYLDMSVIIMKRFQSMQ   78 (78)
Q Consensus        18 e~~~~~~~~~~~~lt~~Cf~kCv~~~~~~~L~~~E~~Ci~~Cv~ky~~~~~~v~~~~~e~~   78 (78)
                      ..++..|-.+||++|+.||..||++|+.++|++.|+.|+.+|++||+..+++|++||+|++
T Consensus         5 ~k~lkDFl~~YN~ltE~CF~dCV~dft~r~l~~~Ee~C~~~C~~Kflk~nqRv~qrf~e~~   65 (83)
T KOG3479|consen    5 IKQLKDFLTLYNKLTELCFSDCVDDFTTRDLSGKEETCVMRCAEKFLKMNQRVSQRFQELQ   65 (83)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhHhhcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4455566668999999999999999999999999999999999999999999999999864

>KOG3377 consensus Uncharacterized conserved protein [Function unknown]

Probab=94.78  E-value=0.2  Score=33.34  Aligned_cols=59  Identities=19%  Similarity=0.331  Sum_probs=44.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhcCCCCC----CCChhHhHHHHHHHHHHHHHHHHHHHHHhh
Q 034922           18 EKEKAMLNEMVAKLTNVCWDKCITSTPGS----KFSSSESACLANCAQRYLDMSVIIMKRFQS   76 (78)
Q Consensus        18 e~~~~~~~~~~~~lt~~Cf~kCv~~~~~~----~L~~~E~~Ci~~Cv~ky~~~~~~v~~~~~e   76 (78)
                      +.++..|++-+++-+-.|-+|=-...+.+    +.-....+|+.+||++++.+---+.+++.+
T Consensus        75 ~~El~~FQ~RL~Rc~m~C~Dk~~~~~~~~~~~~~~~~~~e~Cvn~cvd~~v~liP~m~k~MK~  137 (143)
T KOG3377|consen   75 QSELGKFQDRLNRCLMVCNDKFEASKLQGSKRLKAVQQFESCVNKCVDDHVGLIPTMVKRMKE  137 (143)
T ss_pred             HHHHHHHHHHHHHHHHHHhHHHHHhcccCCchHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence            45677788888888888887754333333    355567789999999999998888888754

>PF05811 DUF842: Eukaryotic protein of unknown function (DUF842); InterPro: IPR008560 This family consists of a number of conserved eukaryotic proteins of unknown function

Probab=94.47  E-value=0.27  Score=31.88  Aligned_cols=59  Identities=14%  Similarity=0.300  Sum_probs=42.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhcCCC-CC---CCChhHhHHHHHHHHHHHHHHHHHHHHHhh
Q 034922           18 EKEKAMLNEMVAKLTNVCWDKCITSTP-GS---KFSSSESACLANCAQRYLDMSVIIMKRFQS   76 (78)
Q Consensus        18 e~~~~~~~~~~~~lt~~Cf~kCv~~~~-~~---~L~~~E~~Ci~~Cv~ky~~~~~~v~~~~~e   76 (78)
                      +.++..|++-+++-+-.|.++=-..++ ++   .....=..|+..||++|+..--.|.+||.+
T Consensus        67 q~El~~FQ~rlqrC~~~C~dk~~d~~~~~~~~~~~~~~~e~C~~~Cvd~hi~llP~l~~r~k~  129 (131)
T PF05811_consen   67 QNELEQFQNRLQRCVMHCQDKAKDKMDPNPNESDAEKQLESCVNKCVDDHIKLLPSLTKRMKK  129 (131)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHh
Confidence            456777888888888888888654322 11   112233589999999999999999998864

The sequences carry three sets of CxxxC motifs, which might suggest a type of zinc-finger formation.

>PF05892 Tricho_coat: Trichovirus coat protein; InterPro: IPR008879 This family consists of several coat proteins which are specific to the ssRNA positive-strand, no DNA stage viruses such as the Trichoviruses and Vitiviruses

Probab=83.45  E-value=5  Score=27.98  Aligned_cols=61  Identities=13%  Similarity=0.126  Sum_probs=47.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc-------CCCCCCCChhHhHHHHHHHHHHHHHHHHH
Q 034922            9 AQMQQFLNQEKEKAMLNEMVAKLTNVCWDKCIT-------STPGSKFSSSESACLANCAQRYLDMSVII   70 (78)
Q Consensus         9 ~e~~~~l~~e~~~~~~~~~~~~lt~~Cf~kCv~-------~~~~~~L~~~E~~Ci~~Cv~ky~~~~~~v   70 (78)
                      ++...+|......-.+..+|.+++..|++ +..       +-+-..|++.|.++|.++-.|.+.+-..-
T Consensus       111 ~eA~~~L~~l~~~g~~TnL~~Kmp~~g~k-~PqV~FDFn~GL~l~~L~~~e~~vIq~ln~RLfrtE~aK  178 (194)
T PF05892_consen  111 PEAYNFLVKLASMGVYTNLYKKMPKLGGK-EPQVMFDFNSGLDLSRLTKEEAKVIQNLNQRLFRTEGAK  178 (194)
T ss_pred             HHHHHHHHHHHhcchHhHHHHhhHhhcCC-CCeEeeecccCcchhhcCHHHHHHHHHHHHHHHHHHHhh
Confidence            45566777777777888899999999984 322       34567899999999999999999886543

; GO: 0019028 viral capsid

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	78
3cjh_B	64	Tim8-Tim13 Complex Length = 64		5e-07
3dxr_B	95	Crystal Structure Of The Yeast Inter-Membrane Space		1e-04
3dxr_A	89	Crystal Structure Of The Yeast Inter-Membrane Space		1e-04

>pdb|3CJH|B Chain B, Tim8-Tim13 Complex Length = 64

Iteration: 1
 Score = 49.7 bits (117), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 22/64 (34%), Positives = 35/64 (54%)
Query: 15 LNQEKEKAMLNEMVAKLTNVCWDKCITSTPGSKFSSSESACLANCAQRYLDMSVIIMKRF 74
          L  E  K  +   + + TN+C+ KC+ S   S  SS E  CL+NC  R+LD ++ I+   
Sbjct: 1  LEGENSKQKVQMSIHQFTNICFKKCVESVNDSNLSSQEEQCLSNCVNRFLDTNIRIVNGL 60
Query: 75 QSMQ 78
          Q+ +
Sbjct: 61 QNTR 64

>pdb|3DXR|B Chain B, Crystal Structure Of The Yeast Inter-Membrane Space Chaperone Assembly Tim9.10 Length = 95

Iteration: 1
 Score = 41.6 bits (96), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 21/61 (34%), Positives = 34/61 (55%), Gaps = 1/61 (1%)
Query: 18 EKEKAMLNEMVAKLTNVCWDKCI-TSTPGSKFSSSESACLANCAQRYLDMSVIIMKRFQS 76
          E E  ++ +M  KL N C+ KCI TS    + + +ES+CL  C  +Y + +V + +  Q 
Sbjct: 25 EAELDLVTDMFNKLVNNCYKKCINTSYSEGELNKNESSCLDRCVAKYFETNVQVGENMQK 84
Query: 77 M 77
          M
Sbjct: 85 M 85

>pdb|3DXR|A Chain A, Crystal Structure Of The Yeast Inter-Membrane Space Chaperone Assembly Tim9.10 Length = 89

Iteration: 1
 Score = 41.6 bits (96), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 21/73 (28%), Positives = 39/73 (53%), Gaps = 2/73 (2%)
Query: 5  ALNSAQMQQFLNQEKEKAMLN--EMVAKLTNVCWDKCITSTPGSKFSSSESACLANCAQR 62
          ALNS + Q+F    ++K M +   + + L   C+  C+     SK ++ E  C+  C+++
Sbjct: 5  ALNSKEQQEFQKVVEQKQMKDFMRLYSNLVERCFTDCVNDFTTSKLTNKEQTCIMKCSEK 64
Query: 63 YLDMSVIIMKRFQ 75
          +L  S  + +RFQ
Sbjct: 65 FLKHSERVGQRFQ 77

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	78
3cjh_B	64	Mitochondrial import inner membrane translocase S	5e-23
2bsk_B	90	Mitochondrial import inner membrane translocase su	1e-13
3dxr_B	95	Mitochondrial import inner membrane translocase su	3e-13
3dxr_A	89	Mitochondrial import inner membrane translocase su	2e-12
2bsk_A	89	Mitochondrial import inner membrane translocase su	3e-08
3cjh_A	64	Mitochondrial import inner membrane translocase S	1e-07

>3cjh_B Mitochondrial import inner membrane translocase S TIM8; cyclic heterohexamer, chaperone, M binding, mitochondrion, protein transport; 2.60A {Saccharomyces cerevisiae} Length = 64

 Score = 82.2 bits (203), Expect = 5e-23
 Identities = 22/64 (34%), Positives = 35/64 (54%)

Query: 15 LNQEKEKAMLNEMVAKLTNVCWDKCITSTPGSKFSSSESACLANCAQRYLDMSVIIMKRF 74
          L  E  K  +   + + TN+C+ KC+ S   S  SS E  CL+NC  R+LD ++ I+   
Sbjct: 1  LEGENSKQKVQMSIHQFTNICFKKCVESVNDSNLSSQEEQCLSNCVNRFLDTNIRIVNGL 60

Query: 75 QSMQ 78
          Q+ +
Sbjct: 61 QNTR 64

>2bsk_B Mitochondrial import inner membrane translocase subunit TIM10; protein transport, mitochondrial protein import, TIM complex; 3.3A {Homo sapiens} SCOP: g.83.1.1 Length = 90

 Score = 59.3 bits (143), Expect = 1e-13
 Identities = 20/70 (28%), Positives = 33/70 (47%), Gaps = 1/70 (1%)

Query: 10 QMQQFLNQEKEKAMLNEMVAKLTNVCWDKCITSTPG-SKFSSSESACLANCAQRYLDMSV 68
             Q L  E E  M+ +M  ++T+ C  KC+      ++ S  ES CL  C  +YLD+  
Sbjct: 4  LRAQQLAAELEVEMMADMYNRMTSACHRKCVPPHYKEAELSKGESVCLDRCVSKYLDIHE 63

Query: 69 IIMKRFQSMQ 78
           + K+   + 
Sbjct: 64 RMGKKLTELS 73

>3dxr_B Mitochondrial import inner membrane translocase subunit TIM10; alpha-propeller, helix-turn-helix, intramolecular disulfides., chaperone; 2.50A {Saccharomyces cerevisiae} Length = 95

 Score = 58.1 bits (140), Expect = 3e-13
 Identities = 20/68 (29%), Positives = 36/68 (52%), Gaps = 1/68 (1%)

Query: 12 QQFLNQEKEKAMLNEMVAKLTNVCWDKCITSTPG-SKFSSSESACLANCAQRYLDMSVII 70
          Q+    E E  ++ +M  KL N C+ KCI ++    + + +ES+CL  C  +Y + +V +
Sbjct: 19 QKIQAAEAELDLVTDMFNKLVNNCYKKCINTSYSEGELNKNESSCLDRCVAKYFETNVQV 78

Query: 71 MKRFQSMQ 78
           +  Q M 
Sbjct: 79 GENMQKMG 86

>3dxr_A Mitochondrial import inner membrane translocase subunit TIM9; alpha-propeller, helix-turn-helix, intramolecular disulfides., chaperone; 2.50A {Saccharomyces cerevisiae} Length = 89

 Score = 55.7 bits (134), Expect = 2e-12
 Identities = 22/79 (27%), Positives = 38/79 (48%), Gaps = 2/79 (2%)

Query: 2  DNSALNSAQMQQFLNQEKEKAMLNEMVA--KLTNVCWDKCITSTPGSKFSSSESACLANC 59
             ALNS + Q+F    ++K M + M     L   C+  C+     SK ++ E  C+  C
Sbjct: 2  SMDALNSKEQQEFQKVVEQKQMKDFMRLYSNLVERCFTDCVNDFTTSKLTNKEQTCIMKC 61

Query: 60 AQRYLDMSVIIMKRFQSMQ 78
          ++++L  S  + +RFQ   
Sbjct: 62 SEKFLKHSERVGQRFQEQN 80

>2bsk_A Mitochondrial import inner membrane translocase subunit TIM9 A; protein transport, mitochondrial protein import, TIM complex; 3.3A {Homo sapiens} SCOP: g.83.1.1 Length = 89

 Score = 45.4 bits (107), Expect = 3e-08
 Identities = 20/71 (28%), Positives = 32/71 (45%), Gaps = 1/71 (1%)

Query: 8  SAQMQQFLNQEKEKAMLNEMVAKLTNVCWDKCITSTPGSKFSSSESACLANCAQRYLDMS 67
          +AQ+ +    ++ K  L     KLT  C+  C+      +    E+ C  +C Q+YL M+
Sbjct: 2  AAQIPESDQIKQFKEFLG-TYNKLTETCFLDCVKDFTTREVKPEETTCSEHCLQKYLKMT 60

Query: 68 VIIMKRFQSMQ 78
            I  RFQ   
Sbjct: 61 QRISMRFQEYH 71

>3cjh_A Mitochondrial import inner membrane translocase S TIM13; cyclic heterohexamer, chaperone, M binding, mitochondrion, protein transport; 2.60A {Saccharomyces cerevisiae} Length = 64

 Score = 42.9 bits (101), Expect = 1e-07
 Identities = 18/57 (31%), Positives = 32/57 (56%), Gaps = 6/57 (10%)

Query: 22 AMLN--EMVAKLTNVCWDKCITSTPGSKFSSSESACLANCAQRYLDMSVIIMKRFQS 76
          A+ N  E+V K++  C++KC+TS P    ++   AC+  C  +Y+    +I K + S
Sbjct: 1  AVANATELVNKISENCFEKCLTS-PY---ATRNDACIDQCLAKYMRSWNVISKAYIS 53

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	78
3cjh_B	64	Mitochondrial import inner membrane translocase S	99.95
3dxr_A	89	Mitochondrial import inner membrane translocase su	99.95
2bsk_B	90	Mitochondrial import inner membrane translocase su	99.94
2bsk_A	89	Mitochondrial import inner membrane translocase su	99.94
3dxr_B	95	Mitochondrial import inner membrane translocase su	99.94
3cjh_A	64	Mitochondrial import inner membrane translocase S	99.89

>3cjh_B Mitochondrial import inner membrane translocase S TIM8; cyclic heterohexamer, chaperone, M binding, mitochondrion, protein transport; 2.60A {Saccharomyces cerevisiae}

Probab=99.95  E-value=1.2e-28  Score=142.39  Aligned_cols=64  Identities=34%  Similarity=0.711  Sum_probs=57.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCChhHhHHHHHHHHHHHHHHHHHHHHHhhcC
Q 034922           15 LNQEKEKAMLNEMVAKLTNVCWDKCITSTPGSKFSSSESACLANCAQRYLDMSVIIMKRFQSMQ   78 (78)
Q Consensus        15 l~~e~~~~~~~~~~~~lt~~Cf~kCv~~~~~~~L~~~E~~Ci~~Cv~ky~~~~~~v~~~~~e~~   78 (78)
                      |++|+++++++++||+|++.||+|||++||+++|+++|++||+|||+|||+++.+|++||++++
T Consensus         1 i~~E~~~~~~~~~~~~lt~~Cf~kCv~~~~~~~L~~~E~~Ci~~Cv~ky~~~~~~v~~~~~~~~   64 (64)
T 3cjh_B            1 LEGENSKQKVQMSIHQFTNICFKKCVESVNDSNLSSQEEQCLSNCVNRFLDTNIRIVNGLQNTR   64 (64)
T ss_dssp             ----CCHHHHHHHHHHHHHHHHHHHCCCCSSSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCcCChhHhHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            4678999999999999999999999998899999999999999999999999999999999863

>3dxr_A Mitochondrial import inner membrane translocase subunit TIM9; alpha-propeller, helix-turn-helix, intramolecular disulfides., chaperone; 2.50A {Saccharomyces cerevisiae}

Probab=99.95  E-value=2.3e-28  Score=149.37  Aligned_cols=74  Identities=20%  Similarity=0.518  Sum_probs=61.5

Q ss_pred             hHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCChhHhHHHHHHHHHHHHHHHHHHHHHhhcC
Q 034922            4 SALNSAQMQQFLNQEKEKAMLNEMVAKLTNVCWDKCITSTPGSKFSSSESACLANCAQRYLDMSVIIMKRFQSMQ   78 (78)
Q Consensus         4 ~~~~~~e~~~~l~~e~~~~~~~~~~~~lt~~Cf~kCv~~~~~~~L~~~E~~Ci~~Cv~ky~~~~~~v~~~~~e~~   78 (78)
                      ++.++++++++++ +.+++.+.++||+|++.||+|||++||+++|+++|++||+|||+|||+++.+|++||++++
T Consensus         7 ~~~~~~el~~~~~-e~q~k~~~~l~~~lte~Cf~kCv~~~~~~~L~~~E~~Ci~~Cv~Ky~~~~~~v~~~~~~~~   80 (89)
T 3dxr_A            7 NSKEQQEFQKVVE-QKQMKDFMRLYSNLVERCFTDCVNDFTTSKLTNKEQTCIMKCSEKFLKHSERVGQRFQEQN   80 (89)
T ss_dssp             -------CCHHHH-HHHHHHHHHHHHHHHHHHHHHHCCCCSSSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             CHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCchHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4567788988886 5566677779999999999999998899999999999999999999999999999999864

>2bsk_B Mitochondrial import inner membrane translocase subunit TIM10; protein transport, mitochondrial protein import, TIM complex; 3.3A {Homo sapiens} SCOP: g.83.1.1

Probab=99.94  E-value=3.5e-28  Score=148.65  Aligned_cols=70  Identities=29%  Similarity=0.562  Sum_probs=57.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc-CCCCCCCChhHhHHHHHHHHHHHHHHHHHHHHHhhc
Q 034922            8 SAQMQQFLNQEKEKAMLNEMVAKLTNVCWDKCIT-STPGSKFSSSESACLANCAQRYLDMSVIIMKRFQSM   77 (78)
Q Consensus         8 ~~e~~~~l~~e~~~~~~~~~~~~lt~~Cf~kCv~-~~~~~~L~~~E~~Ci~~Cv~ky~~~~~~v~~~~~e~   77 (78)
                      ++++++++.++++++.++++||+|++.||+|||+ +||+++|+++|++||+|||+|||+++.+|++||+++
T Consensus         2 ~~e~~~~~~~e~q~~~~~~l~n~lte~Cf~KCv~~~~~~~~L~~~E~~Ci~~Cv~Ky~d~~~~V~~~~~~~   72 (90)
T 2bsk_B            2 DPLRAQQLAAELEVEMMADMYNRMTSACHRKCVPPHYKEAELSKGESVCLDRCVSKYLDIHERMGKKLTEL   72 (90)
T ss_dssp             -----------CTTTTTHHHHHHHHHHHHHHHCCTTCCSSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCcCcCChhHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5789999999999999999999999999999995 689999999999999999999999999999999875

>2bsk_A Mitochondrial import inner membrane translocase subunit TIM9 A; protein transport, mitochondrial protein import, TIM complex; 3.3A {Homo sapiens} SCOP: g.83.1.1

Probab=99.94  E-value=3.1e-27  Score=144.36  Aligned_cols=70  Identities=29%  Similarity=0.483  Sum_probs=54.4

Q ss_pred             CCchHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCChhHhHHHHHHHHHHHHHHHHHHHHHhhc
Q 034922            1 MDNSALNSAQMQQFLNQEKEKAMLNEMVAKLTNVCWDKCITSTPGSKFSSSESACLANCAQRYLDMSVIIMKRFQSM   77 (78)
Q Consensus         1 m~~~~~~~~e~~~~l~~e~~~~~~~~~~~~lt~~Cf~kCv~~~~~~~L~~~E~~Ci~~Cv~ky~~~~~~v~~~~~e~   77 (78)
                      ||++..+++++++       .+.++++||+|++.||+|||++||+++|+++|++||+|||+|||+++.+|++||+++
T Consensus         1 m~~~~~~~~q~~q-------~~~~~~l~n~lte~Cf~KCv~~~~~~~L~~~E~~Ci~~Cv~Ky~d~~~~V~~~~~~~   70 (89)
T 2bsk_A            1 MAAQIPESDQIKQ-------FKEFLGTYNKLTETCFLDCVKDFTTREVKPEETTCSEHCLQKYLKMTQRISMRFQEY   70 (89)
T ss_dssp             ------------C-------CHHHHHHHHHHHHHHHHHHCCCCSSSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CChhhcCHHHHHH-------HHHHHHHHHHHHHHHHHHHcccCCCCcCCchHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            6666666665554       445899999999999999998889999999999999999999999999999999875

>3dxr_B Mitochondrial import inner membrane translocase subunit TIM10; alpha-propeller, helix-turn-helix, intramolecular disulfides., chaperone; 2.50A {Saccharomyces cerevisiae}

Probab=99.94  E-value=1.7e-26  Score=142.73  Aligned_cols=67  Identities=31%  Similarity=0.640  Sum_probs=62.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhhc-CCCCCCCChhHhHHHHHHHHHHHHHHHHHHHHHhhcC
Q 034922           12 QQFLNQEKEKAMLNEMVAKLTNVCWDKCIT-STPGSKFSSSESACLANCAQRYLDMSVIIMKRFQSMQ   78 (78)
Q Consensus        12 ~~~l~~e~~~~~~~~~~~~lt~~Cf~kCv~-~~~~~~L~~~E~~Ci~~Cv~ky~~~~~~v~~~~~e~~   78 (78)
                      +.++++|++++.++++||+||+.||+|||+ +||+++|+++|++||+|||+|||+++.+|++||+++.
T Consensus        19 qk~~~aE~q~~~~~~l~nklte~Cf~KCV~~~~~~~~L~~~E~~Ci~~Cv~Ky~d~~~~V~~~~q~~~   86 (95)
T 3dxr_B           19 QKIQAAEAELDLVTDMFNKLVNNCYKKCINTSYSEGELNKNESSCLDRCVAKYFETNVQVGENMQKMG   86 (95)
T ss_dssp             TTTHHHHHHHHHHHHHHHHHHHHHHHHHCCCTTCCSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            456789999999999999999999999998 6799999999999999999999999999999999863

>3cjh_A Mitochondrial import inner membrane translocase S TIM13; cyclic heterohexamer, chaperone, M binding, mitochondrion, protein transport; 2.60A {Saccharomyces cerevisiae}

Probab=99.89  E-value=1.7e-23  Score=120.95  Aligned_cols=54  Identities=30%  Similarity=0.707  Sum_probs=47.7

Q ss_pred             HHHHHHHHHHHHHHHHHHhhhcCCCCCCCChhHhHHHHHHHHHHHHHHHHHHHHHhhc
Q 034922           20 EKAMLNEMVAKLTNVCWDKCITSTPGSKFSSSESACLANCAQRYLDMSVIIMKRFQSM   77 (78)
Q Consensus        20 ~~~~~~~~~~~lt~~Cf~kCv~~~~~~~L~~~E~~Ci~~Cv~ky~~~~~~v~~~~~e~   77 (78)
                      ++++++++|++|++.||+|||+ .|   |+++|++||++||+|||+++++|++||+++
T Consensus         1 ~~a~~~~l~~~lt~~Cf~kCv~-~~---L~~~E~~Ci~~Cv~Ky~~~~~~v~~~~~~~   54 (64)
T 3cjh_A            1 AVANATELVNKISENCFEKCLT-SP---YATRNDACIDQCLAKYMRSWNVISKAYISR   54 (64)
T ss_dssp             ----CHHHHHHHHHHHHHHHCC-TT---CCSCCHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             ChHHHHHHHHHHHHHHHHHHCC-Cc---CChhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4678999999999999999997 45   999999999999999999999999999875

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	78
d2bskb1	65	g.83.1.1 (B:13-77) Mitochondrial import inner memb	2e-14
d2bska1	73	g.83.1.1 (A:13-85) Mitochondrial import inner memb	4e-14

>d2bskb1 g.83.1.1 (B:13-77) Mitochondrial import inner membrane translocase subunit Tim10 {Human (Homo sapiens) [TaxId: 9606]} Length = 65

class: Small proteins
fold: Tim10-like
superfamily: Tim10-like
family: Tim10/DDP
domain: Mitochondrial import inner membrane translocase subunit Tim10
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 59.4 bits (144), Expect = 2e-14
 Identities = 17/60 (28%), Positives = 30/60 (50%), Gaps = 1/60 (1%)

Query: 20 EKAMLNEMVAKLTNVCWDKCITST-PGSKFSSSESACLANCAQRYLDMSVIIMKRFQSMQ 78
          E  M+ +M  ++T+ C  KC+      ++ S  ES CL  C  +YLD+   + K+   + 
Sbjct: 2  EVEMMADMYNRMTSACHRKCVPPHYKEAELSKGESVCLDRCVSKYLDIHERMGKKLTELS 61

>d2bska1 g.83.1.1 (A:13-85) Mitochondrial import inner membrane translocase subunit Tim9 {Human (Homo sapiens) [TaxId: 9606]} Length = 73

class: Small proteins
fold: Tim10-like
superfamily: Tim10-like
family: Tim10/DDP
domain: Mitochondrial import inner membrane translocase subunit Tim9
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 58.7 bits (142), Expect = 4e-14
 Identities = 19/69 (27%), Positives = 28/69 (40%), Gaps = 10/69 (14%)

Query: 10 QMQQFLNQEKEKAMLNEMVAKLTNVCWDKCITSTPGSKFSSSESACLANCAQRYLDMSVI 69
          Q ++FL              KLT  C+  C+      +    E+ C  +C Q+YL M+  
Sbjct: 1  QFKEFLG----------TYNKLTETCFLDCVKDFTTREVKPEETTCSEHCLQKYLKMTQR 50

Query: 70 IMKRFQSMQ 78
          I  RFQ   
Sbjct: 51 ISMRFQEYH 59

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	78
d2bska1	73	Mitochondrial import inner membrane translocase su	99.93
d2bskb1	65	Mitochondrial import inner membrane translocase su	99.91

>d2bska1 g.83.1.1 (A:13-85) Mitochondrial import inner membrane translocase subunit Tim9 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Tim10-like
superfamily: Tim10-like
family: Tim10/DDP
domain: Mitochondrial import inner membrane translocase subunit Tim9
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=2.6e-26  Score=134.58  Aligned_cols=58  Identities=28%  Similarity=0.515  Sum_probs=54.3

Q ss_pred             HHHHHHHHHHHHHHHHHhhhcCCCCCCCChhHhHHHHHHHHHHHHHHHHHHHHHhhcC
Q 034922           21 KAMLNEMVAKLTNVCWDKCITSTPGSKFSSSESACLANCAQRYLDMSVIIMKRFQSMQ   78 (78)
Q Consensus        21 ~~~~~~~~~~lt~~Cf~kCv~~~~~~~L~~~E~~Ci~~Cv~ky~~~~~~v~~~~~e~~   78 (78)
                      ++.+..+||+||+.||+|||+++|+++|+++|.+||+|||+||++++++|++||+|+|
T Consensus         2 ~kdfl~~yn~lte~Cf~kCv~~~~~~~L~~~E~~Ci~~Cv~Kf~~~~~~v~~rfqe~q   59 (73)
T d2bska1           2 FKEFLGTYNKLTETCFLDCVKDFTTREVKPEETTCSEHCLQKYLKMTQRISMRFQEYH   59 (73)
T ss_dssp             CHHHHHHHHHHHHHHHHHHCCCCSSSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHhCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3567789999999999999999999999999999999999999999999999999864

>d2bskb1 g.83.1.1 (B:13-77) Mitochondrial import inner membrane translocase subunit Tim10 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Tim10-like
superfamily: Tim10-like
family: Tim10/DDP
domain: Mitochondrial import inner membrane translocase subunit Tim10
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=4.2e-25  Score=126.84  Aligned_cols=57  Identities=28%  Similarity=0.654  Sum_probs=52.7

Q ss_pred             HHHHHHHHHHHHHHHHHhhhc-CCCCCCCChhHhHHHHHHHHHHHHHHHHHHHHHhhc
Q 034922           21 KAMLNEMVAKLTNVCWDKCIT-STPGSKFSSSESACLANCAQRYLDMSVIIMKRFQSM   77 (78)
Q Consensus        21 ~~~~~~~~~~lt~~Cf~kCv~-~~~~~~L~~~E~~Ci~~Cv~ky~~~~~~v~~~~~e~   77 (78)
                      ++.++++||+|++.||+|||+ .+++++|+++|.+||+||++||++++.+|++||+++
T Consensus         3 ~~~~~~m~nklt~~Cf~kCV~~~~~~~~L~~~E~~Ci~~C~~ky~d~~~~v~~r~q~~   60 (65)
T d2bskb1           3 VEMMADMYNRMTSACHRKCVPPHYKEAELSKGESVCLDRCVSKYLDIHERMGKKLTEL   60 (65)
T ss_dssp             TTTTHHHHHHHHHHHHHHHCCTTCCSSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHCCCCCCCCcCCchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            456889999999999999997 467999999999999999999999999999999985