Citrus Sinensis ID: 034937

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------
Protein Sequence
MAILSRMHFKEVLRANPVQAESHDEFSQWLCHVHNVVNRSLGKLVFPCERVDARWGKLECEQRACDLQGTTDSADQIC
Secondary Structure (PSIPRED)
ccHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHccccccccccHHHHHccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHccccccccccccccccccccccc
Coil and Loop (DISEMBL)
MAILSRMHFKevlranpvqaeshdEFSQWLCHVHNVVnrslgklvfpcervdarwgkLECEqracdlqgttdsadqic
Flexible Loop (DISEMBL)
mailsrmhfkeVLRANPVQAESHDEFSQWLCHVHNVVNRSLGKLVFPCERVDARWGKLECEqracdlqgttdsadqic
Low Complexity Region (SEG)
MAILSRMHFKEVLRANPVQAESHDEFSQWLCHVHNVVNRSLGKLVFPCERVDARWGKLECEQRACDLQGTTDSADQIC
Disordered region (IsUnstruct)
**********************HDEFSQWLCHVHNVVNRSLGKLVFPCERVDARWGKLECEQRACD************
Disordered Region (DISOPRED)
*AILSRMHFKEVLRANPVQAESHDEFSQWLCHVHNVVNRSLGKLVFPCERVDARWGKLECE*****************
Disordered Region (DISEMBL)
MAILSRMHFKEVLRANPVQAESHDEFSQWLCHVHNVVNRSLGKLVFPCERVDARWGKLECEQRACDLQGTTDSADQIC
Disordered Region (DISPRO)
*AILSRMHFKEVLRANPVQAESHDEFSQWLCHVHNVVNRSLGKLVFPCERVDARWGKLECEQRACDL***********
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MAILSRMHFKEVLRANPVQAESHDEFSQWLCHVHNVVNRSLGKLVFPCERVDARWGKLECEQRACDLQGTTDSADQIC
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	78	2.2.26 [Sep-21-2011]
Q8GXX0	191	FAD-linked sulfhydryl oxi	yes	no	0.910	0.371	0.746	7e-30
P55789	205	FAD-linked sulfhydryl oxi	yes	no	0.384	0.146	0.666	2e-06
Q63042	198	FAD-linked sulfhydryl oxi	no	no	0.576	0.227	0.521	3e-06
P56213	198	FAD-linked sulfhydryl oxi	yes	no	0.384	0.151	0.7	4e-06
P27882	189	Mitochondrial FAD-linked	yes	no	0.602	0.248	0.404	6e-05

>sp|Q8GXX0|ERV1_ARATH FAD-linked sulfhydryl oxidase ERV1 OS=Arabidopsis thaliana GN=ERV1 PE=1 SV=1

 Score =  129 bits (323), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 59/79 (74%), Positives = 65/79 (82%), Gaps = 8/79 (10%)

Query: 1   MAILSRM--------HFKEVLRANPVQAESHDEFSQWLCHVHNVVNRSLGKLVFPCERVD 52
           M ILSRM        HFKE+LR+NP QA S +EFSQWLCHVHN VNRSLGKLVFPCERVD
Sbjct: 110 MTILSRMYPCRECADHFKEILRSNPAQAGSQEEFSQWLCHVHNTVNRSLGKLVFPCERVD 169

Query: 53  ARWGKLECEQRACDLQGTT 71
           ARWGKLECEQ++CDL GT+
Sbjct: 170 ARWGKLECEQKSCDLHGTS 188

FAD-dependent sulfhydryl oxidase that catalyzes disulfide bond formation. Oxidizes thioredoxin in vitro.
Arabidopsis thaliana (taxid: 3702)
EC: 1EC: .EC: 8EC: .EC: 3EC: .EC: 2

>sp|P55789|ALR_HUMAN FAD-linked sulfhydryl oxidase ALR OS=Homo sapiens GN=GFER PE=1 SV=2

 Score = 50.8 bits (120), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 20/30 (66%), Positives = 23/30 (76%)

Query: 26  FSQWLCHVHNVVNRSLGKLVFPCERVDARW 55
           F+QWLCH+HN VNR LGK  F C +VD RW
Sbjct: 166 FTQWLCHLHNEVNRKLGKPDFDCSKVDERW 195

Isoform 2: May act as an autocrine hepatotrophic growth factor promoting liver regeneration.

Homo sapiens (taxid: 9606)

EC: 1

EC: .

EC: 8

EC: .

EC: 3

EC: .

EC: 2

>sp|Q63042|ALR_RAT FAD-linked sulfhydryl oxidase ALR OS=Rattus norvegicus GN=Gfer PE=1 SV=2

 Score = 50.8 bits (120), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 24/46 (52%), Positives = 28/46 (60%), Gaps = 1/46 (2%)

Query: 10  KEVLRANPVQAESHDEFSQWLCHVHNVVNRSLGKLVFPCERVDARW 55
           K + R+ P    +   FSQWLC +HN VNR LGK  F C RVD RW
Sbjct: 144 KRIDRSQP-DTSTRVSFSQWLCRLHNEVNRKLGKPDFDCSRVDERW 188

FAD-dependent sulfhydryl oxidase that catalyzes disulfide bond formation. Within the mitochondrial intermembrane space, participates in a chain of disulfide exchange reactions with MIA40, that generate disulfide bonds in a number of resident proteins with twin Cx3C and Cx9C motifs. May have a function in liver regeneration and spermatogenesis.

Rattus norvegicus (taxid: 10116)

EC: 1

EC: .

EC: 8

EC: .

EC: 3

EC: .

EC: 2

>sp|P56213|ALR_MOUSE FAD-linked sulfhydryl oxidase ALR OS=Mus musculus GN=Gfer PE=2 SV=2

 Score = 50.1 bits (118), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 21/30 (70%), Positives = 22/30 (73%)

Query: 26  FSQWLCHVHNVVNRSLGKLVFPCERVDARW 55
           FSQWLC +HN VNR LGK  F C RVD RW
Sbjct: 159 FSQWLCRLHNEVNRKLGKPDFDCSRVDERW 188

FAD-dependent sulfhydryl oxidase. Within the mitochondrial intermembrane space, participates in a chain of disulfide exchange reactions with MIA40, that generate disulfide bonds in a number of resident proteins with twin Cx3C and Cx9C motifs.

Mus musculus (taxid: 10090)

EC: 1

EC: .

EC: 8

EC: .

EC: 3

EC: .

EC: 2

>sp|P27882|ERV1_YEAST Mitochondrial FAD-linked sulfhydryl oxidase ERV1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=ERV1 PE=1 SV=2

 Score = 46.2 bits (108), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 19/47 (40%), Positives = 27/47 (57%)

Query: 9   FKEVLRANPVQAESHDEFSQWLCHVHNVVNRSLGKLVFPCERVDARW 55
           F++ +R N  Q ES +E  +W+C  HN VN+ L K  F C   + RW
Sbjct: 137 FEKYIRENAPQVESREELGRWMCEAHNKVNKKLRKPKFDCNFWEKRW 183

FAD-dependent sulfhydryl oxidase that catalyzes disulfide bond formation. Required for the import and folding of small cysteine-containing proteins in the mitochondrial intermembrane space (IMS). Forms a redox cycle with MIA40 that involves a disulfide relay system. Important for maintaining the cysteine residues in MIA40 in an oxidized state. Reduced ERV1 is reoxidized by cytochrome c. Required for the maturation of cytoplasmic, but not of mitochondrial Fe/S proteins.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

EC: 1

EC: .

EC: 8

EC: .

EC: 3

EC: .

EC: 2

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	78
255573131	196	alr/erv, putative [Ricinus communis] gi|	0.935	0.372	0.814	8e-31
224103723	197	predicted protein [Populus trichocarpa]	0.910	0.360	0.812	9e-29
18402827	191	Erv1/Alr-like protein [Arabidopsis thali	0.910	0.371	0.746	3e-28
21555659	190	unknown [Arabidopsis thaliana]	0.910	0.373	0.746	3e-28
12323604	175	hypothetical protein; 32417-34250 [Arabi	0.910	0.405	0.746	4e-28
297847316	187	hypothetical protein ARALYDRAFT_891909 [	0.910	0.379	0.746	4e-28
359475490	198	PREDICTED: FAD-linked sulfhydryl oxidase	0.974	0.383	0.738	1e-27
114794388	125	Chain A, Structure Of The Arabidopsis Th	0.910	0.568	0.746	1e-27
449484338	197	PREDICTED: FAD-linked sulfhydryl oxidase	0.897	0.355	0.743	1e-26
449469330	197	PREDICTED: FAD-linked sulfhydryl oxidase	0.897	0.355	0.743	2e-26

>gi|255573131|ref|XP_002527495.1| alr/erv, putative [Ricinus communis] gi|223533135|gb|EEF34893.1| alr/erv, putative [Ricinus communis]

 Score =  137 bits (345), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 66/81 (81%), Positives = 68/81 (83%), Gaps = 8/81 (9%)

Query: 1   MAILSRM--------HFKEVLRANPVQAESHDEFSQWLCHVHNVVNRSLGKLVFPCERVD 52
           MAILSRM        HF+EVLR NPVQA SH EFSQWLCHVHNVVNRSLGKLVFPCERVD
Sbjct: 113 MAILSRMYPCKECADHFREVLRVNPVQAGSHTEFSQWLCHVHNVVNRSLGKLVFPCERVD 172

Query: 53  ARWGKLECEQRACDLQGTTDS 73
           ARWGKLECEQRACDLQGT  +
Sbjct: 173 ARWGKLECEQRACDLQGTASN 193

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224103723|ref|XP_002313169.1| predicted protein [Populus trichocarpa] gi|222849577|gb|EEE87124.1| predicted protein [Populus trichocarpa]

 Score =  130 bits (327), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 65/80 (81%), Positives = 67/80 (83%), Gaps = 9/80 (11%)

Query: 1   MAILSRM--------HFKEVLRANPVQAESHDEFSQWLCHVHNVVNRSLGKLVFPCERVD 52
           MAILSRM        HFK+ L  NPVQA SH EFSQWLCHVHNVVNRSLGKLVFPCERVD
Sbjct: 115 MAILSRMYPCQECADHFKKFL-INPVQAGSHAEFSQWLCHVHNVVNRSLGKLVFPCERVD 173

Query: 53  ARWGKLECEQRACDLQGTTD 72
           ARWGKLECEQRACDLQGTT+
Sbjct: 174 ARWGKLECEQRACDLQGTTN 193

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18402827|ref|NP_564557.1| Erv1/Alr-like protein [Arabidopsis thaliana] gi|75151306|sp|Q8GXX0.1|ERV1_ARATH RecName: Full=FAD-linked sulfhydryl oxidase ERV1; Short=AtErv1; AltName: Full=Mitochondrial sulfhydryl oxidase ERV1 gi|26451041|dbj|BAC42626.1| unknown protein [Arabidopsis thaliana] gi|28372928|gb|AAO39946.1| At1g49880 [Arabidopsis thaliana] gi|45771904|emb|CAD83013.1| mitochondrial sulfhydryl oxidase Erv1p [Arabidopsis thaliana] gi|332194366|gb|AEE32487.1| Erv1/Alr-like protein [Arabidopsis thaliana]

 Score =  129 bits (323), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 59/79 (74%), Positives = 65/79 (82%), Gaps = 8/79 (10%)

Query: 1   MAILSRM--------HFKEVLRANPVQAESHDEFSQWLCHVHNVVNRSLGKLVFPCERVD 52
           M ILSRM        HFKE+LR+NP QA S +EFSQWLCHVHN VNRSLGKLVFPCERVD
Sbjct: 110 MTILSRMYPCRECADHFKEILRSNPAQAGSQEEFSQWLCHVHNTVNRSLGKLVFPCERVD 169

Query: 53  ARWGKLECEQRACDLQGTT 71
           ARWGKLECEQ++CDL GT+
Sbjct: 170 ARWGKLECEQKSCDLHGTS 188

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|21555659|gb|AAM63908.1| unknown [Arabidopsis thaliana]

 Score =  128 bits (322), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 59/79 (74%), Positives = 65/79 (82%), Gaps = 8/79 (10%)

Query: 1   MAILSRM--------HFKEVLRANPVQAESHDEFSQWLCHVHNVVNRSLGKLVFPCERVD 52
           M ILSRM        HFKE+LR+NP QA S +EFSQWLCHVHN VNRSLGKLVFPCERVD
Sbjct: 109 MTILSRMYPCRECADHFKEILRSNPAQAGSQEEFSQWLCHVHNTVNRSLGKLVFPCERVD 168

Query: 53  ARWGKLECEQRACDLQGTT 71
           ARWGKLECEQ++CDL GT+
Sbjct: 169 ARWGKLECEQKSCDLHGTS 187

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|12323604|gb|AAG51780.1|AC079674_13 hypothetical protein; 32417-34250 [Arabidopsis thaliana]

 Score =  128 bits (322), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 59/79 (74%), Positives = 65/79 (82%), Gaps = 8/79 (10%)

Query: 1   MAILSRM--------HFKEVLRANPVQAESHDEFSQWLCHVHNVVNRSLGKLVFPCERVD 52
           M ILSRM        HFKE+LR+NP QA S +EFSQWLCHVHN VNRSLGKLVFPCERVD
Sbjct: 94  MTILSRMYPCRECADHFKEILRSNPAQAGSQEEFSQWLCHVHNTVNRSLGKLVFPCERVD 153

Query: 53  ARWGKLECEQRACDLQGTT 71
           ARWGKLECEQ++CDL GT+
Sbjct: 154 ARWGKLECEQKSCDLHGTS 172

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297847316|ref|XP_002891539.1| hypothetical protein ARALYDRAFT_891909 [Arabidopsis lyrata subsp. lyrata] gi|297337381|gb|EFH67798.1| hypothetical protein ARALYDRAFT_891909 [Arabidopsis lyrata subsp. lyrata]

 Score =  128 bits (322), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 59/79 (74%), Positives = 66/79 (83%), Gaps = 8/79 (10%)

Query: 1   MAILSRM--------HFKEVLRANPVQAESHDEFSQWLCHVHNVVNRSLGKLVFPCERVD 52
           MAILSRM        HFKE+LR+NP QA S +EFSQWLCHVHN VNRSLGKLVFPCERVD
Sbjct: 106 MAILSRMYPCRECADHFKEILRSNPAQAGSQEEFSQWLCHVHNTVNRSLGKLVFPCERVD 165

Query: 53  ARWGKLECEQRACDLQGTT 71
           ARWGKLECEQ++CDL G++
Sbjct: 166 ARWGKLECEQKSCDLHGSS 184

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359475490|ref|XP_002263818.2| PREDICTED: FAD-linked sulfhydryl oxidase ERV1 [Vitis vinifera] gi|296083069|emb|CBI22473.3| unnamed protein product [Vitis vinifera]

 Score =  127 bits (318), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 62/84 (73%), Positives = 67/84 (79%), Gaps = 8/84 (9%)

Query: 1   MAILSRM--------HFKEVLRANPVQAESHDEFSQWLCHVHNVVNRSLGKLVFPCERVD 52
           MAILSRM        HFKEVLRANPVQA S  EFSQWLCHVHNVVNRSL K +FPC+RVD
Sbjct: 113 MAILSRMYPCKECADHFKEVLRANPVQAGSQAEFSQWLCHVHNVVNRSLNKPIFPCKRVD 172

Query: 53  ARWGKLECEQRACDLQGTTDSADQ 76
           ARWGKL+CE RACDLQGT D  ++
Sbjct: 173 ARWGKLDCELRACDLQGTPDFGER 196

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|114794388|pdb|2HJ3|A Chain A, Structure Of The Arabidopsis Thaliana Erv1 Thiol Oxidase gi|114794389|pdb|2HJ3|B Chain B, Structure Of The Arabidopsis Thaliana Erv1 Thiol Oxidase

 Score =  127 bits (318), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 59/79 (74%), Positives = 65/79 (82%), Gaps = 8/79 (10%)

Query: 1   MAILSRM--------HFKEVLRANPVQAESHDEFSQWLCHVHNVVNRSLGKLVFPCERVD 52
           M ILSRM        HFKE+LR+NP QA S +EFSQWLCHVHN VNRSLGKLVFPCERVD
Sbjct: 44  MTILSRMYPCRECADHFKEILRSNPAQAGSQEEFSQWLCHVHNTVNRSLGKLVFPCERVD 103

Query: 53  ARWGKLECEQRACDLQGTT 71
           ARWGKLECEQ++CDL GT+
Sbjct: 104 ARWGKLECEQKSCDLHGTS 122

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449484338|ref|XP_004156855.1| PREDICTED: FAD-linked sulfhydryl oxidase ERV1-like [Cucumis sativus]

 Score =  123 bits (308), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 58/78 (74%), Positives = 64/78 (82%), Gaps = 8/78 (10%)

Query: 1   MAILSRM--------HFKEVLRANPVQAESHDEFSQWLCHVHNVVNRSLGKLVFPCERVD 52
           MAILSRM        HFKEVLRANPV+  SH +FS+WLC VHNVVNRSLGK +FPCERVD
Sbjct: 110 MAILSRMYPCGECADHFKEVLRANPVETGSHADFSRWLCRVHNVVNRSLGKPIFPCERVD 169

Query: 53  ARWGKLECEQRACDLQGT 70
           ARWGKLECEQRACD+ G+
Sbjct: 170 ARWGKLECEQRACDVLGS 187

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449469330|ref|XP_004152374.1| PREDICTED: FAD-linked sulfhydryl oxidase ERV1-like [Cucumis sativus]

 Score =  123 bits (308), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 58/78 (74%), Positives = 64/78 (82%), Gaps = 8/78 (10%)

Query: 1   MAILSRM--------HFKEVLRANPVQAESHDEFSQWLCHVHNVVNRSLGKLVFPCERVD 52
           MAILSRM        HFKEVLRANPV+  SH +FS+WLC VHNVVNRSLGK +FPCERVD
Sbjct: 110 MAILSRMYPCGECADHFKEVLRANPVETGSHADFSRWLCRVHNVVNRSLGKPIFPCERVD 169

Query: 53  ARWGKLECEQRACDLQGT 70
           ARWGKLECEQRACD+ G+
Sbjct: 170 ARWGKLECEQRACDVLGS 187

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	78
TAIR|locus:2007283	191	Erv1 "Erv1" [Arabidopsis thali	0.910	0.371	0.746	3.9e-28
UNIPROTKB|G4N0Y7	189	MGG_13005 "FAD-linked sulfhydr	0.730	0.301	0.431	8.4e-10
UNIPROTKB|F1NSV1	189	GFER "Uncharacterized protein"	0.589	0.243	0.543	2.2e-09
RGD|61845	198	Gfer "growth factor, augmenter	0.576	0.227	0.521	3.3e-08
UNIPROTKB|H3BQQ4	130	GFER "Growth factor, augmenter	0.576	0.346	0.5	5.3e-08
UNIPROTKB|P55789	205	GFER "FAD-linked sulfhydryl ox	0.576	0.219	0.5	5.8e-08
MGI|MGI:107757	198	Gfer "growth factor, erv1 (S.	0.576	0.227	0.521	6.8e-08
DICTYBASE|DDB_G0272230	224	DDB_G0272230 "FAD-linked sulfh	0.602	0.209	0.404	2e-07
ZFIN|ZDB-GENE-060810-186	191	gfer "growth factor, augmenter	0.551	0.225	0.511	2.3e-07
UNIPROTKB|F1RFB9	205	GFER "Uncharacterized protein"	0.576	0.219	0.456	3.1e-07

TAIR|locus:2007283 Erv1 "Erv1" [Arabidopsis thaliana (taxid:3702)]

 Score = 314 (115.6 bits), Expect = 3.9e-28, P = 3.9e-28
 Identities = 59/79 (74%), Positives = 65/79 (82%)

Query:     1 MAILSRM--------HFKEVLRANPVQAESHDEFSQWLCHVHNVVNRSLGKLVFPCERVD 52
             M ILSRM        HFKE+LR+NP QA S +EFSQWLCHVHN VNRSLGKLVFPCERVD
Sbjct:   110 MTILSRMYPCRECADHFKEILRSNPAQAGSQEEFSQWLCHVHNTVNRSLGKLVFPCERVD 169

Query:    53 ARWGKLECEQRACDLQGTT 71
             ARWGKLECEQ++CDL GT+
Sbjct:   170 ARWGKLECEQKSCDLHGTS 188

GO:0005634 "nucleus" evidence=ISM

GO:0016972 "thiol oxidase activity" evidence=IEA;IDA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0005739 "mitochondrion" evidence=IDA

GO:0042802 "identical protein binding" evidence=IPI

GO:0050660 "flavin adenine dinucleotide binding" evidence=IDA

UNIPROTKB|G4N0Y7 MGG_13005 "FAD-linked sulfhydryl oxidase ALR" [Magnaporthe oryzae 70-15 (taxid:242507)]

 Score = 141 (54.7 bits), Expect = 8.4e-10, P = 8.4e-10
 Identities = 25/58 (43%), Positives = 35/58 (60%)

Query:     9 FKEVLRANPVQAESHDEFSQWLCHVHNVVNRSLGKLVFPCERVDARWGKLECEQRACD 66
             F+E ++ +PV+  + DEF  WLC+ HN VN+ LGK VF C   D RW +   +   CD
Sbjct:   133 FREYIKRDPVRVRTRDEFGNWLCNAHNDVNKKLGKPVFDCNLWDQRW-RTGWKDGRCD 189

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISS

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|F1NSV1 GFER "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 137 (53.3 bits), Expect = 2.2e-09, P = 2.2e-09
 Identities = 25/46 (54%), Positives = 29/46 (63%)

Query:    10 KEVLRANPVQAESHDEFSQWLCHVHNVVNRSLGKLVFPCERVDARW 55
             +E LR N     + + FSQWLC +HN VNR LGK  F C RVD RW
Sbjct:   134 RERLRTNQPDTSNRNNFSQWLCLLHNEVNRKLGKSEFDCSRVDERW 179

GO:0016972 "thiol oxidase activity" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

RGD|61845 Gfer "growth factor, augmenter of liver regeneration" [Rattus norvegicus (taxid:10116)]

 Score = 126 (49.4 bits), Expect = 3.3e-08, P = 3.3e-08
 Identities = 24/46 (52%), Positives = 28/46 (60%)

Query:    10 KEVLRANPVQAESHDEFSQWLCHVHNVVNRSLGKLVFPCERVDARW 55
             K + R+ P    +   FSQWLC +HN VNR LGK  F C RVD RW
Sbjct:   144 KRIDRSQP-DTSTRVSFSQWLCRLHNEVNRKLGKPDFDCSRVDERW 188

GO:0005737 "cytoplasm" evidence=ISO

GO:0005739 "mitochondrion" evidence=ISO

GO:0005758 "mitochondrial intermembrane space" evidence=IEA

GO:0008083 "growth factor activity" evidence=IEA

GO:0015035 "protein disulfide oxidoreductase activity" evidence=ISO;ISS

GO:0016972 "thiol oxidase activity" evidence=IEA

GO:0050660 "flavin adenine dinucleotide binding" evidence=ISO;ISS

UNIPROTKB|H3BQQ4 GFER "Growth factor, augmenter of liver regeneration (ERV1 homolog, S. cerevisiae), isoform CRA_a" [Homo sapiens (taxid:9606)]

 Score = 124 (48.7 bits), Expect = 5.3e-08, P = 5.3e-08
 Identities = 23/46 (50%), Positives = 29/46 (63%)

Query:    10 KEVLRANPVQAESHDEFSQWLCHVHNVVNRSLGKLVFPCERVDARW 55
             K + R +P    +   F+QWLCH+HN VNR LGK  F C +VD RW
Sbjct:    76 KRLCRNHP-DTRTRACFTQWLCHLHNEVNRKLGKPDFDCSKVDERW 120

GO:0016972 "thiol oxidase activity" evidence=IEA

UNIPROTKB|P55789 GFER "FAD-linked sulfhydryl oxidase ALR" [Homo sapiens (taxid:9606)]

 Score = 124 (48.7 bits), Expect = 5.8e-08, P = 5.8e-08
 Identities = 23/46 (50%), Positives = 29/46 (63%)

Query:    10 KEVLRANPVQAESHDEFSQWLCHVHNVVNRSLGKLVFPCERVDARW 55
             K + R +P    +   F+QWLCH+HN VNR LGK  F C +VD RW
Sbjct:   151 KRLCRNHP-DTRTRACFTQWLCHLHNEVNRKLGKPDFDCSKVDERW 195

GO:0008083 "growth factor activity" evidence=IEA

GO:0016972 "thiol oxidase activity" evidence=IEA

GO:0005576 "extracellular region" evidence=IEA

GO:0005758 "mitochondrial intermembrane space" evidence=IEA

GO:0007283 "spermatogenesis" evidence=NAS

GO:0008283 "cell proliferation" evidence=NAS

GO:0005515 "protein binding" evidence=IPI

GO:0005575 "cellular_component" evidence=ND

GO:0015035 "protein disulfide oxidoreductase activity" evidence=IDA

GO:0050660 "flavin adenine dinucleotide binding" evidence=IDA

GO:0006626 "protein targeting to mitochondrion" evidence=TAS

GO:0044267 "cellular protein metabolic process" evidence=TAS

GO:0005737 "cytoplasm" evidence=IDA

GO:0005739 "mitochondrion" evidence=IDA

MGI|MGI:107757 Gfer "growth factor, erv1 (S. cerevisiae)-like (augmenter of liver regeneration)" [Mus musculus (taxid:10090)]

 Score = 123 (48.4 bits), Expect = 6.8e-08, P = 6.8e-08
 Identities = 24/46 (52%), Positives = 27/46 (58%)

Query:    10 KEVLRANPVQAESHDEFSQWLCHVHNVVNRSLGKLVFPCERVDARW 55
             K + R  P    +   FSQWLC +HN VNR LGK  F C RVD RW
Sbjct:   144 KRIGRNQP-DTSTRVSFSQWLCRLHNEVNRKLGKPDFDCSRVDERW 188

GO:0005737 "cytoplasm" evidence=IEA

GO:0005739 "mitochondrion" evidence=IDA

GO:0008083 "growth factor activity" evidence=IEA

GO:0015035 "protein disulfide oxidoreductase activity" evidence=ISO

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0016972 "thiol oxidase activity" evidence=IEA

GO:0050660 "flavin adenine dinucleotide binding" evidence=ISO

GO:0055114 "oxidation-reduction process" evidence=IEA

DICTYBASE|DDB_G0272230 DDB_G0272230 "FAD-linked sulfhydryl oxidase ALR" [Dictyostelium discoideum (taxid:44689)]

 Score = 121 (47.7 bits), Expect = 2.0e-07, P = 2.0e-07
 Identities = 19/47 (40%), Positives = 30/47 (63%)

Query:     9 FKEVLRANPVQAESHDEFSQWLCHVHNVVNRSLGKLVFPCERVDARW 55
             F+E+++  P   +S ++F+ WLC+ HN VN  LGK  F C  ++ RW
Sbjct:   169 FREIMKETPPILDSQNDFALWLCNAHNNVNLQLGKPTFDCNLINKRW 215

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0016972 "thiol oxidase activity" evidence=IEA

ZFIN|ZDB-GENE-060810-186 gfer "growth factor, augmenter of liver regeneration (ERV1 homolog, S. cerevisiae)" [Danio rerio (taxid:7955)]

 Score = 118 (46.6 bits), Expect = 2.3e-07, P = 2.3e-07
 Identities = 22/43 (51%), Positives = 26/43 (60%)

Query:    13 LRANPVQAESHDEFSQWLCHVHNVVNRSLGKLVFPCERVDARW 55
             L+ N   A S  + SQWLC +HN +N  LGK  F C RVD RW
Sbjct:   139 LKTNRPDAGSRHKLSQWLCRLHNDINIRLGKPEFDCSRVDERW 181

GO:0016972 "thiol oxidase activity" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA;IMP;IDA

GO:0016971 "flavin-linked sulfhydryl oxidase activity" evidence=IMP;IDA

GO:0005739 "mitochondrion" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0031012 "extracellular matrix" evidence=IDA

GO:0005634 "nucleus" evidence=IDA

GO:0042803 "protein homodimerization activity" evidence=IDA

GO:0001889 "liver development" evidence=IMP

UNIPROTKB|F1RFB9 GFER "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 118 (46.6 bits), Expect = 3.1e-07, P = 3.1e-07
 Identities = 21/46 (45%), Positives = 27/46 (58%)

Query:    10 KEVLRANPVQAESHDEFSQWLCHVHNVVNRSLGKLVFPCERVDARW 55
             + + R  P    +   F+QWLC +HN VNR LGK  F C +VD RW
Sbjct:   151 RRICRNQP-DTRTRAHFTQWLCRLHNEVNRKLGKPEFDCSQVDERW 195

GO:0005739 "mitochondrion" evidence=IEA

GO:0016972 "thiol oxidase activity" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q8GXX0	ERV1_ARATH	1, ., 8, ., 3, ., 2	0.7468	0.9102	0.3717	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	1.8.3.2	0.824
3rd Layer	1.8.3	0.766

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	fgenesh4_pm.C_LG_IX000359	hypothetical protein (197 aa)
		(Populus trichocarpa)
Predicted Functional Partners:
	estExt_Genewise1_v1.C_LG_XII1623	SubName- Full=Putative uncharacterized protein; (95 aa)				•	•	•	•		0.627
	eugene3.00150807	SubName- Full=Putative uncharacterized protein; (78 aa)						•	•		0.430
	fgenesh4_pg.C_LG_X002142	SubName- Full=Putative uncharacterized protein; (145 aa)						•	•		0.430
	estExt_Genewise1_v1.C_LG_I0325	hypothetical protein (99 aa)						•	•		0.406

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	78
COG5054	181	COG5054, ERV1, Mitochondrial sulfhydryl oxidase in	2e-13
pfam04777	95	pfam04777, Evr1_Alr, Erv1 / Alr family	2e-13

>gnl|CDD|227387 COG5054, ERV1, Mitochondrial sulfhydryl oxidase involved in the biogenesis of cytosolic Fe/S proteins [Posttranslational modification, protein turnover, chaperones]

 Score = 61.4 bits (149), Expect = 2e-13
 Identities = 19/48 (39%), Positives = 27/48 (56%)

Query: 8   HFKEVLRANPVQAESHDEFSQWLCHVHNVVNRSLGKLVFPCERVDARW 55
           HF+++L   P Q  S +  + W C VHN VN  LGK  F C+  + R+
Sbjct: 128 HFQKLLDVYPPQVSSREAATTWACEVHNKVNEKLGKPKFDCDTWNERY 175

Length = 181

>gnl|CDD|218261 pfam04777, Evr1_Alr, Erv1 / Alr family

 Score = 58.9 bits (143), Expect = 2e-13
 Identities = 22/52 (42%), Positives = 29/52 (55%), Gaps = 1/52 (1%)

Query: 6  RMHFKEVLRANPVQAESHDEFSQWLCHVHNVVNRSLGKLVF-PCERVDARWG 56
            HF+++L  NP Q  S D+ S WLC  HN VN  LGK +F    +V  R+ 
Sbjct: 43 AEHFQKILAKNPPQVSSRDDLSLWLCEAHNEVNARLGKPLFCSDPKVKERYP 94

Biogenesis of Fe/S clusters involves a number of essential mitochondrial proteins. Erv1p of Saccharomyces cerevisiae mitochondria is required for the maturation of Fe/S proteins in the cytosol. The ALR (augmenter of liver regeneration) represents a mammalian orthologue of yeast Erv1p. Both Erv1p and full-length ALR are located in the mitochondrial intermembrane an d it thought to operate downstream of the mitochondrial ABC transporter. Length = 95

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	78
KOG3355	177	consensus Mitochondrial sulfhydryl oxidase involve	99.96
COG5054	181	ERV1 Mitochondrial sulfhydryl oxidase involved in	99.91
PF04777	95	Evr1_Alr: Erv1 / Alr family; InterPro: IPR006863 B	99.74
KOG1731	606	consensus FAD-dependent sulfhydryl oxidase/quiesci	97.77

>KOG3355 consensus Mitochondrial sulfhydryl oxidase involved in the biogenesis of cytosolic Fe/S proteins [Posttranslational modification, protein turnover, chaperones]

Probab=99.96  E-value=1.8e-29  Score=181.04  Aligned_cols=66  Identities=44%  Similarity=0.874  Sum_probs=62.0

Q ss_pred             Ccccccc--------hHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHhcCCCCCCchhHHhhhccCccCCCcccC
Q 034937            1 MAILSRM--------HFKEVLRANPVQAESHDEFSQWLCHVHNVVNRSLGKLVFPCERVDARWGKLECEQRACDL   67 (78)
Q Consensus         1 ~~~f~rl--------~f~~~l~~~PP~v~SR~~ls~WlC~~HN~VN~kLGKp~FdCs~v~eRW~~~~~~~~~cd~   67 (78)
                      |++||++        ||+++|++|||+|+||++|.+|||++||.||++||||.|||..|+|||+.|+. +|+||.
T Consensus       104 i~~~s~~yPC~eCa~dl~K~l~~nppq~~SRe~~~~W~C~vHN~VNekLgKp~fdC~~v~erw~~g~~-~~~~d~  177 (177)
T KOG3355|consen  104 IHLFSKFYPCGECAKDLRKILRKNPPQTSSREAFTQWLCHVHNKVNEKLGKPKFDCRTVDERWRDGWK-DGSCDR  177 (177)
T ss_pred             HHHhhhhcchHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHHHHHHcCCCCCchhHHHHHHhchhh-hcCCCC
Confidence            4678888        99999999999999999999999999999999999999999999999999955 599984

>COG5054 ERV1 Mitochondrial sulfhydryl oxidase involved in the biogenesis of cytosolic Fe/S proteins [Posttranslational modification, protein turnover, chaperones]

Probab=99.91  E-value=7e-25  Score=157.64  Aligned_cols=59  Identities=34%  Similarity=0.590  Sum_probs=55.6

Q ss_pred             cccccc--------hHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHhcCCCCCCchhHHhhhccCcc
Q 034937            2 AILSRM--------HFKEVLRANPVQAESHDEFSQWLCHVHNVVNRSLGKLVFPCERVDARWGKLEC   60 (78)
Q Consensus         2 ~~f~rl--------~f~~~l~~~PP~v~SR~~ls~WlC~~HN~VN~kLGKp~FdCs~v~eRW~~~~~   60 (78)
                      ++||.+        ||+++|..|||||+||+++..|+|++||.||++||||+|||..|.|||.+|++
T Consensus       114 ~~~s~~yPCgeCs~~f~K~l~~~ppqv~SRea~~~W~CevHN~VNekL~Kp~~dC~~~~e~~~~G~~  180 (181)
T COG5054         114 FLFSITYPCGECSKHFQKLLDVYPPQVSSREAATTWACEVHNKVNEKLGKPKFDCDTWNERYDCGCD  180 (181)
T ss_pred             HHhhheeecHHHHHHHHHHHhhCCCCcccHHHHHHHHHHHHHHHHHHhCCCCcccchhHHHhhccCC
Confidence            456666        99999999999999999999999999999999999999999999999999954

>PF04777 Evr1_Alr: Erv1 / Alr family; InterPro: IPR006863 Biogenesis of Fe/S clusters involves a number of essential mitochondrial proteins

Probab=99.74  E-value=3.1e-18  Score=109.09  Aligned_cols=50  Identities=34%  Similarity=0.711  Sum_probs=47.2

Q ss_pred             hHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHhcCCCCC-CchhHHhhhcc
Q 034937            8 HFKEVLRANPVQAESHDEFSQWLCHVHNVVNRSLGKLVF-PCERVDARWGK   57 (78)
Q Consensus         8 ~f~~~l~~~PP~v~SR~~ls~WlC~~HN~VN~kLGKp~F-dCs~v~eRW~~   57 (78)
                      ||.++++++||+++||++|..|+|++||.||+|||||.| ++..+.+||..
T Consensus        45 hf~~~~~~~~~~v~sr~~l~~Wl~~~HN~VN~rL~k~~~~~~~~~~~~~~~   95 (95)
T PF04777_consen   45 HFSKYIKKNPPQVSSREDLVLWLWRAHNKVNERLGKPIFCDDPKFKEQWPT   95 (95)
T ss_dssp             HHHHHHHHSGGGGSSHHHHHHHHHHHHHHHHHHTTTSTTTSGTTHHHHHT-
T ss_pred             HHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHhCCCCCCCcHHHHhHcCC
Confidence            999999999999999999999999999999999999997 88889999963

Erv1p of Saccharomyces cerevisiae (Baker's yeast) mitochondria is required for the maturation of Fe/S proteins in the cytosol. The ALR (augmenter of liver regeneration) represents a mammalian ortholog of yeast Erv1p. Both Erv1p and full-length ALR are located in the mitochondrial intermembrane and it is thought to operate downstream of the mitochondrial ABC transporter [].; GO: 0016972 thiol oxidase activity, 0055114 oxidation-reduction process; PDB: 3MBG_C 3U2L_A 3U2M_A 3QD9_D 3QCP_A 3O55_A 2HJ3_B 3GWN_A 3T58_D 3T59_B ....

>KOG1731 consensus FAD-dependent sulfhydryl oxidase/quiescin and related proteins [Cell cycle control, cell division, chromosome partitioning]

Probab=97.77  E-value=2.8e-05  Score=64.63  Aligned_cols=46  Identities=24%  Similarity=0.416  Sum_probs=37.4

Q ss_pred             hHHHHHh-hCCCCCCCHHHHHHHHHHHHHHHHHhcCC-----CCCCchhHHh
Q 034937            8 HFKEVLR-ANPVQAESHDEFSQWLCHVHNVVNRSLGK-----LVFPCERVDA   53 (78)
Q Consensus         8 ~f~~~l~-~~PP~v~SR~~ls~WlC~~HN~VN~kLGK-----p~FdCs~v~e   53 (78)
                      ||+++-. .+++.|.++++..+||+.+||+||+||.+     |+|+=-.+-.
T Consensus       455 HF~~Ma~~~~~~~V~~ped~vLWLW~aHN~VN~RLaGd~TeDPkFPK~QFP~  506 (606)
T KOG1731|consen  455 HFQKMATRRKLHRVRRPEDVVLWLWSAHNEVNARLAGDSTEDPKFPKVQFPP  506 (606)
T ss_pred             HHHHHHHhhcccccCChhhhhhHHHHHhhHHHHHhccCCCCCCCCCcccCCC
Confidence            8988875 47799999999999999999999999986     5565433333

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	78
2hj3_A	125	Structure Of The Arabidopsis Thaliana Erv1 Thiol Ox		2e-30
3r7c_A	139	The Structure Of A Hexahestidine-Tagged Form Of Aug		2e-07
3mbg_A	139	Crystal Structure Of Human Augmenter Of Liver Regen		2e-07
1oqc_A	125	The Crystal Structure Of Augmenter Of Liver Regener		2e-07
3tk0_A	126	Mutation Of Sfalr Length = 126		2e-07
3o55_A	125	Crystal Structure Of Human Fad-Linked Augmenter Of		2e-07
3u2m_A	115	Crystal Structure Of Human Alr Mutant C142145S Leng		2e-07
3u2l_A	115	Crystal Structure Of Human Alr Mutant C142s Length		3e-07
4e0i_A	189	Crystal Structure Of The C30s/c133s Mutant Of Erv1		5e-06
4e0h_A	106	Crystal Structure Of Fad Binding Domain Of Erv1 Fro		8e-06
3u5s_A	126	Selenium Substituted Human Augmenter Of Liver Regen		1e-05
1jr8_A	117	Crystal Structure Of Erv2p Length = 117		2e-04

>pdb|2HJ3|A Chain A, Structure Of The Arabidopsis Thaliana Erv1 Thiol Oxidase Length = 125

Iteration: 1
 Score =  127 bits (318), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 59/79 (74%), Positives = 65/79 (82%), Gaps = 8/79 (10%)
Query: 1   MAILSRM--------HFKEVLRANPVQAESHDEFSQWLCHVHNVVNRSLGKLVFPCERVD 52
           M ILSRM        HFKE+LR+NP QA S +EFSQWLCHVHN VNRSLGKLVFPCERVD
Sbjct: 44  MTILSRMYPCRECADHFKEILRSNPAQAGSQEEFSQWLCHVHNTVNRSLGKLVFPCERVD 103
Query: 53  ARWGKLECEQRACDLQGTT 71
           ARWGKLECEQ++CDL GT+
Sbjct: 104 ARWGKLECEQKSCDLHGTS 122

>pdb|3R7C|A Chain A, The Structure Of A Hexahestidine-Tagged Form Of Augmenter Of Liver Regeneration Reveals A Novel Cd(2)cl(4)o(6) Cluster That Aids In Crystal Packing Length = 139

Iteration: 1
 Score = 51.2 bits (121), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 24/46 (52%), Positives = 28/46 (60%), Gaps = 1/46 (2%)
Query: 10  KEVLRANPVQAESHDEFSQWLCHVHNVVNRSLGKLVFPCERVDARW 55
           K + R+ P    +   FSQWLC +HN VNR LGK  F C RVD RW
Sbjct: 85  KRIDRSQP-DTSTRVSFSQWLCRLHNEVNRKLGKPDFDCSRVDERW 129

>pdb|3MBG|A Chain A, Crystal Structure Of Human Augmenter Of Liver Regeneration (Alr) Length = 139

Iteration: 1
 Score = 50.8 bits (120), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 22/47 (46%), Positives = 28/47 (59%)
Query: 9   FKEVLRANPVQAESHDEFSQWLCHVHNVVNRSLGKLVFPCERVDARW 55
            ++ L  N     +   F+QWLCH+HN VNR LGK  F C +VD RW
Sbjct: 83  LRKRLARNHPDTRTRAAFTQWLCHLHNEVNRKLGKPDFDCSKVDERW 129

>pdb|1OQC|A Chain A, The Crystal Structure Of Augmenter Of Liver Regeneration: A Mammalian Fad Dependent Sulfhydryl Oxidase Length = 125

Iteration: 1
 Score = 50.8 bits (120), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 24/46 (52%), Positives = 28/46 (60%), Gaps = 1/46 (2%)
Query: 10  KEVLRANPVQAESHDEFSQWLCHVHNVVNRSLGKLVFPCERVDARW 55
           K + R+ P    +   FSQWLC +HN VNR LGK  F C RVD RW
Sbjct: 71  KRIDRSQP-DTSTRVSFSQWLCRLHNEVNRKLGKPDFDCSRVDERW 115

>pdb|3TK0|A Chain A, Mutation Of Sfalr Length = 126

Iteration: 1
 Score = 50.8 bits (120), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 20/30 (66%), Positives = 23/30 (76%)
Query: 26  FSQWLCHVHNVVNRSLGKLVFPCERVDARW 55
           F+QWLCH+HN VNR LGK  F C +VD RW
Sbjct: 87  FTQWLCHLHNEVNRKLGKPDFDCSKVDERW 116

>pdb|3O55|A Chain A, Crystal Structure Of Human Fad-Linked Augmenter Of Liver Regeneration (Alr) Length = 125

Iteration: 1
 Score = 50.4 bits (119), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 22/47 (46%), Positives = 28/47 (59%)
Query: 9   FKEVLRANPVQAESHDEFSQWLCHVHNVVNRSLGKLVFPCERVDARW 55
            ++ L  N     +   F+QWLCH+HN VNR LGK  F C +VD RW
Sbjct: 69  LRKRLARNHPDTRTRAAFTQWLCHLHNEVNRKLGKPDFDCSKVDERW 115

>pdb|3U2M|A Chain A, Crystal Structure Of Human Alr Mutant C142145S Length = 115

Iteration: 1
 Score = 50.4 bits (119), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 20/30 (66%), Positives = 23/30 (76%)
Query: 26  FSQWLCHVHNVVNRSLGKLVFPCERVDARW 55
           F+QWLCH+HN VNR LGK  F C +VD RW
Sbjct: 76  FTQWLCHLHNEVNRKLGKPDFDCSKVDERW 105

>pdb|3U2L|A Chain A, Crystal Structure Of Human Alr Mutant C142s Length = 115

Iteration: 1
 Score = 50.1 bits (118), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 20/30 (66%), Positives = 23/30 (76%)
Query: 26  FSQWLCHVHNVVNRSLGKLVFPCERVDARW 55
           F+QWLCH+HN VNR LGK  F C +VD RW
Sbjct: 76  FTQWLCHLHNEVNRKLGKPDFDCSKVDERW 105

>pdb|4E0I|A Chain A, Crystal Structure Of The C30s/c133s Mutant Of Erv1 From Saccharomyces Cerevisiae Length = 189

Iteration: 1
 Score = 46.2 bits (108), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 20/51 (39%), Positives = 28/51 (54%)
Query: 5   SRMHFKEVLRANPVQAESHDEFSQWLCHVHNVVNRSLGKLVFPCERVDARW 55
           S   F++ +R N  Q ES +E  +W+C  HN VN+ L K  F C   + RW
Sbjct: 133 SAKDFEKYIRENAPQVESREELGRWMCEAHNKVNKKLRKPKFDCNFWEKRW 183

>pdb|4E0H|A Chain A, Crystal Structure Of Fad Binding Domain Of Erv1 From Saccharomyces Cerevisiae Length = 106

Iteration: 1
 Score = 45.4 bits (106), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 19/47 (40%), Positives = 27/47 (57%)
Query: 9   FKEVLRANPVQAESHDEFSQWLCHVHNVVNRSLGKLVFPCERVDARW 55
           F++ +R N  Q ES +E  +W+C  HN VN+ L K  F C   + RW
Sbjct: 54  FEKYIRENAPQVESREELGRWMCEAHNKVNKKLRKPKFDCNFWEKRW 100

>pdb|3U5S|A Chain A, Selenium Substituted Human Augmenter Of Liver Regeneration Length = 126

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 18/30 (60%), Positives = 21/30 (70%)
Query: 26  FSQWLCHVHNVVNRSLGKLVFPCERVDARW 55
           F+QWL H+HN VNR LGK  F   +VD RW
Sbjct: 87  FTQWLXHLHNEVNRKLGKPDFDXSKVDERW 116

>pdb|1JR8|A Chain A, Crystal Structure Of Erv2p Length = 117

Iteration: 1
 Score = 40.4 bits (93), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 16/45 (35%), Positives = 24/45 (53%)
Query: 7   MHFKEVLRANPVQAESHDEFSQWLCHVHNVVNRSLGKLVFPCERV 51
            HF +++   PVQ  S    + W CH+HN VN  L K ++ C  +
Sbjct: 56  YHFVKLIEKYPVQTSSRTAAAMWGCHIHNKVNEYLKKDIYDCATI 100

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	78
2hj3_A	125	Sulfhydryl oxidase ERV1P; four-helix bundle, flavi	5e-21
3mbg_A	139	FAD-linked sulfhydryl oxidase ALR; flavin, flavopr	8e-16
1oqc_A	125	ALR, augmenter of liver regeneration; sulfhydryl o	4e-15
3gwl_A	106	P14, FAD-linked sulfhydryl oxidase; homodimer, fiv	8e-15
1jr8_A	117	ERV2 protein, mitochondrial; FAD, sulfhydryl oxida	9e-15
3llk_A	261	Sulfhydryl oxidase 1; disulfide, flavin adenine di	3e-10
3gwn_A	114	Probable FAD-linked sulfhydryl oxidase R596; five	4e-08

>2hj3_A Sulfhydryl oxidase ERV1P; four-helix bundle, flavin adenine dinucleotide, oxidoreductase; HET: FAD; 2.50A {Arabidopsis thaliana} Length = 125

 Score = 78.7 bits (193), Expect = 5e-21
 Identities = 53/66 (80%), Positives = 59/66 (89%)

Query: 6   RMHFKEVLRANPVQAESHDEFSQWLCHVHNVVNRSLGKLVFPCERVDARWGKLECEQRAC 65
             HFKE+LR+NP QA S +EFSQWLCHVHN VNRSLGKLVFPCERVDARWGKLECEQ++C
Sbjct: 57  ADHFKEILRSNPAQAGSQEEFSQWLCHVHNTVNRSLGKLVFPCERVDARWGKLECEQKSC 116

Query: 66  DLQGTT 71
           DL GT+
Sbjct: 117 DLHGTS 122

>3mbg_A FAD-linked sulfhydryl oxidase ALR; flavin, flavoprotein, GFER; HET: FAD; 1.85A {Homo sapiens} PDB: 3r7c_A* Length = 139

 Score = 65.9 bits (160), Expect = 8e-16
 Identities = 24/61 (39%), Positives = 33/61 (54%), Gaps = 1/61 (1%)

Query: 6   RMHFKEVLRANPVQAESHDEFSQWLCHVHNVVNRSLGKLVFPCERVDARWGKLECEQRAC 65
               ++ L  N     +   F+QWLCH+HN VNR LGK  F C +VD RW +   +  +C
Sbjct: 80  AEDLRKRLARNHPDTRTRAAFTQWLCHLHNEVNRKLGKPDFDCSKVDERW-RDGWKDGSC 138

Query: 66  D 66
           D
Sbjct: 139 D 139

>1oqc_A ALR, augmenter of liver regeneration; sulfhydryl oxidase, helix-turn-HELI oxidoreductase; HET: FAD; 1.80A {Rattus norvegicus} SCOP: a.24.15.1 PDB: 3o55_A* Length = 125

 Score = 63.9 bits (155), Expect = 4e-15
 Identities = 23/61 (37%), Positives = 31/61 (50%), Gaps = 1/61 (1%)

Query: 6   RMHFKEVLRANPVQAESHDEFSQWLCHVHNVVNRSLGKLVFPCERVDARWGKLECEQRAC 65
               ++ +  +     +   FSQWLC +HN VNR LGK  F C RVD RW     +  +C
Sbjct: 66  AEDIRKRIDRSQPDTSTRVSFSQWLCRLHNEVNRKLGKPDFDCSRVDERWRD-GWKDGSC 124

Query: 66  D 66
           D
Sbjct: 125 D 125

>3gwl_A P14, FAD-linked sulfhydryl oxidase; homodimer, five-helix bundle, cytoplasm, disulfide bond, flavoprotein, late protein; HET: FAD; 2.10A {African swine fever virus BA71V} Length = 106

 Score = 62.5 bits (151), Expect = 8e-15
 Identities = 12/52 (23%), Positives = 20/52 (38%)

Query: 6   RMHFKEVLRANPVQAESHDEFSQWLCHVHNVVNRSLGKLVFPCERVDARWGK 57
           + H    L  NP+   + ++F  W    HN VN  L K +         + +
Sbjct: 51  QHHAFSYLTKNPLTLNNSEDFQYWTFAFHNNVNNRLNKKIISWSEYKNIYEQ 102

>1jr8_A ERV2 protein, mitochondrial; FAD, sulfhydryl oxidase, helical bundle, CXXC, oxidoreductase; HET: FAD; 1.50A {Saccharomyces cerevisiae} SCOP: a.24.15.1 PDB: 1jra_A* Length = 117

 Score = 62.7 bits (152), Expect = 9e-15
 Identities = 16/50 (32%), Positives = 25/50 (50%)

Query: 6   RMHFKEVLRANPVQAESHDEFSQWLCHVHNVVNRSLGKLVFPCERVDARW 55
             HF +++   PVQ  S    + W CH+HN VN  L K ++ C  +   +
Sbjct: 55  SYHFVKLIEKYPVQTSSRTAAAMWGCHIHNKVNEYLKKDIYDCATILEDY 104

>3llk_A Sulfhydryl oxidase 1; disulfide, flavin adenine dinucleotide, alternative splicing, FAD, flavoprotein, glycoprotein, GOLG apparatus, membrane; HET: FAD FLC; 2.00A {Homo sapiens} PDB: 3lli_A* Length = 261

 Score = 52.8 bits (126), Expect = 3e-10
 Identities = 11/38 (28%), Positives = 17/38 (44%)

Query: 6   RMHFKEVLRANPVQAESHDEFSQWLCHVHNVVNRSLGK 43
             HF+++  A+  +  S +    WL   HN VN  L  
Sbjct: 168 ASHFEQMAAASMHRVGSPNAAVLWLWSSHNRVNARLAG 205

>3gwn_A Probable FAD-linked sulfhydryl oxidase R596; five helix bundle, homodimer, disulfide bond, flavoprot oxidoreductase, virion; HET: FAD; 1.78A {Acanthamoeba polyphaga mimivirus} Length = 114

 Score = 45.5 bits (107), Expect = 4e-08
 Identities = 11/56 (19%), Positives = 19/56 (33%), Gaps = 6/56 (10%)

Query: 6   RMHFKEVLRANPVQ-----AESHDEFSQWLCHVHNVVNRSLGK-LVFPCERVDARW 55
           R  +K+ +             +    ++W   VHN VN  L        E V  ++
Sbjct: 53  RESYKKFITTGKTALTNEVLRNRHTLTKWFYDVHNAVNNKLEVDYGLSYEDVVNKY 108

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	78
2hj3_A	125	Sulfhydryl oxidase ERV1P; four-helix bundle, flavi	99.96
3u5s_A	126	FAD-linked sulfhydryl oxidase ALR; flavin, liver,	99.95
1jr8_A	117	ERV2 protein, mitochondrial; FAD, sulfhydryl oxida	99.91
4e0h_A	106	Mitochondrial FAD-linked sulfhydryl oxidase ERV1;	99.91
3gwl_A	106	P14, FAD-linked sulfhydryl oxidase; homodimer, fiv	99.9
4e0i_A	189	Mitochondrial FAD-linked sulfhydryl oxidase ERV1;	99.88
3gwn_A	114	Probable FAD-linked sulfhydryl oxidase R596; five	99.81
3t58_A	519	Sulfhydryl oxidase 1; oxidoreductase; HET: FAD; 2.	99.35
3td7_A	295	FAD-linked sulfhydryl oxidase R596; four helix-bun	99.33
3llk_A	261	Sulfhydryl oxidase 1; disulfide, flavin adenine di	99.31
3qcp_A	470	QSOX from trypanosoma brucei (tbqsox); ERV fold, t	98.95

>2hj3_A Sulfhydryl oxidase ERV1P; four-helix bundle, flavin adenine dinucleotide, oxidoreductase; HET: FAD; 2.50A {Arabidopsis thaliana}

Probab=99.96  E-value=3.5e-31  Score=178.43  Aligned_cols=64  Identities=83%  Similarity=1.503  Sum_probs=48.9

Q ss_pred             hHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHhcCCCCCCchhHHhhhccCccCCCcccCCCCC
Q 034937            8 HFKEVLRANPVQAESHDEFSQWLCHVHNVVNRSLGKLVFPCERVDARWGKLECEQRACDLQGTT   71 (78)
Q Consensus         8 ~f~~~l~~~PP~v~SR~~ls~WlC~~HN~VN~kLGKp~FdCs~v~eRW~~~~~~~~~cd~~~~~   71 (78)
                      ||+++++++||+|+||++|++|||++||.||+|||||+|||+.|.|||+.||+|+|||||+|.+
T Consensus        59 hF~~~~~~~p~~v~sr~~~~lWLw~~HN~VN~rL~Kp~f~c~~~~~rw~~g~~d~~~c~~~~~~  122 (125)
T 2hj3_A           59 HFKEILRSNPAQAGSQEEFSQWLCHVHNTVNRSLGKLVFPCERVDARWGKLECEQKSCDLHGTS  122 (125)
T ss_dssp             HHHHHHHHSCCCCSSHHHHHHHHHHHHHHHHHHTTCCCCCTTSHHHHCC---------------
T ss_pred             HHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHhhCCCCCCHHHHHHHhccCCCCCCCcCCCCCC
Confidence            9999999999999999999999999999999999999999999999999999999999998864

>3u5s_A FAD-linked sulfhydryl oxidase ALR; flavin, liver, oxidoreductase; HET: FAD; 1.50A {Homo sapiens} PDB: 3mbg_A* 3tk0_A* 3o55_A* 3u2m_A* 3u2l_A* 3r7c_A* 1oqc_A*

Probab=99.95  E-value=1.6e-28  Score=165.49  Aligned_cols=58  Identities=36%  Similarity=0.624  Sum_probs=56.7

Q ss_pred             hHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHhcCCCCCCchhHHhhhccCccCCCccc
Q 034937            8 HFKEVLRANPVQAESHDEFSQWLCHVHNVVNRSLGKLVFPCERVDARWGKLECEQRACD   66 (78)
Q Consensus         8 ~f~~~l~~~PP~v~SR~~ls~WlC~~HN~VN~kLGKp~FdCs~v~eRW~~~~~~~~~cd   66 (78)
                      ||+++|+++||+++||++|++|||++||.||++||||+|||+.|.|||++|+.| ||||
T Consensus        69 hf~~~l~~~pp~l~SR~~l~~Wl~~~HN~VN~rLgKp~fd~~~~~ery~~g~~d-g~~d  126 (126)
T 3u5s_A           69 DLRKRLARNHPDTRTRAAFTQWLXHLHNEVNRKLGKPDFDXSKVDERWRDGWKD-GSXD  126 (126)
T ss_dssp             HHHHHHHHSCCCCSSHHHHHHHHHHHHHHHHHHTTCCCCCGGGHHHHHTTCCTT-STTC
T ss_pred             HHHHHHHHCccccCCHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHccCCCC-CCCC
Confidence            999999999999999999999999999999999999999999999999999775 9998

>1jr8_A ERV2 protein, mitochondrial; FAD, sulfhydryl oxidase, helical bundle, CXXC, oxidoreductase; HET: FAD; 1.50A {Saccharomyces cerevisiae} SCOP: a.24.15.1 PDB: 1jra_A*

Probab=99.91  E-value=2.3e-25  Score=148.45  Aligned_cols=54  Identities=30%  Similarity=0.565  Sum_probs=51.5

Q ss_pred             hHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHhcCCCCCCchhHHhhhccCccC
Q 034937            8 HFKEVLRANPVQAESHDEFSQWLCHVHNVVNRSLGKLVFPCERVDARWGKLECE   61 (78)
Q Consensus         8 ~f~~~l~~~PP~v~SR~~ls~WlC~~HN~VN~kLGKp~FdCs~v~eRW~~~~~~   61 (78)
                      ||+++++++||+|+||++|++|||++||.||++||||+|||+.|.|||++|+.+
T Consensus        57 hF~~~~~~~p~~v~sr~~~~lWLw~~HN~VN~rL~kp~f~c~~~~er~~~g~~~  110 (117)
T 1jr8_A           57 HFVKLIEKYPVQTSSRTAAAMWGCHIHNKVNEYLKKDIYDCATILEDYDCGCSD  110 (117)
T ss_dssp             HHHHHHHHSCCCCSSHHHHHHHHHHHHHHHHHHTTCCCCCCTTHHHHTCCCC--
T ss_pred             HHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHhCCCCcCHHHHHHHHhcCCCC
Confidence            999999999999999999999999999999999999999999999999999776

>4e0h_A Mitochondrial FAD-linked sulfhydryl oxidase ERV1; four-helix bundle, flavin-linked sulfhydryl oxidase, FAD BIN oxidation; HET: FAD; 2.00A {Saccharomyces cerevisiae}

Probab=99.91  E-value=8.2e-25  Score=142.59  Aligned_cols=54  Identities=37%  Similarity=0.694  Sum_probs=52.1

Q ss_pred             hHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHhcCCCCCCchhHHhhhccCccC
Q 034937            8 HFKEVLRANPVQAESHDEFSQWLCHVHNVVNRSLGKLVFPCERVDARWGKLECE   61 (78)
Q Consensus         8 ~f~~~l~~~PP~v~SR~~ls~WlC~~HN~VN~kLGKp~FdCs~v~eRW~~~~~~   61 (78)
                      ||+++++++||+++||++|++|+|.+||.||++||||+|||+.+.+||++|+.|
T Consensus        53 hf~~~l~~~p~~~~sr~~l~~Wl~~~HN~VN~rLgKp~f~~~~~~~ry~~g~~d  106 (106)
T 4e0h_A           53 DFEKYIRENAPQVESREELGRWMCEAHNKVNKKLRKPKFDCNFWEKRWKDGWDE  106 (106)
T ss_dssp             HHHHHHHHSCCCCSSHHHHHHHHHHHHHHHHHHTTCCCCCGGGHHHHHTSCCC-
T ss_pred             HHHHHHHHCCCccCCHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHhcCCC
Confidence            999999999999999999999999999999999999999999999999999764

>3gwl_A P14, FAD-linked sulfhydryl oxidase; homodimer, five-helix bundle, cytoplasm, disulfide bond, flavoprotein, late protein; HET: FAD; 2.10A {African swine fever virus BA71V}

Probab=99.90  E-value=2e-24  Score=141.65  Aligned_cols=50  Identities=24%  Similarity=0.433  Sum_probs=49.0

Q ss_pred             hHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHhcCCCCCCchhHHhhhcc
Q 034937            8 HFKEVLRANPVQAESHDEFSQWLCHVHNVVNRSLGKLVFPCERVDARWGK   57 (78)
Q Consensus         8 ~f~~~l~~~PP~v~SR~~ls~WlC~~HN~VN~kLGKp~FdCs~v~eRW~~   57 (78)
                      ||+++++++||++.||.++++|||++||+||++||||+|||+.|.|||+.
T Consensus        53 hf~~~~~~~p~~~~s~~~~~lWlc~~HN~VN~rLgKp~fdc~~~~e~y~~  102 (106)
T 3gwl_A           53 HAFSYLTKNPLTLNNSEDFQYWTFAFHNNVNNRLNKKIISWSEYKNIYEQ  102 (106)
T ss_dssp             HHHHHHHHSCCCCSSHHHHHHHHHHHHHHHHHHTTCCCCCHHHHHHHHTT
T ss_pred             HHHHHHHhCCCCccChHHHHHHHHHHHhHHHHhhCCCCCCHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999985

>4e0i_A Mitochondrial FAD-linked sulfhydryl oxidase ERV1; flavin-linked sulfhydryl oxidase, MIA40, oxidation, mitochon intermembrane space; HET: FAD; 3.00A {Saccharomyces cerevisiae}

Probab=99.88  E-value=1.3e-23  Score=149.95  Aligned_cols=54  Identities=37%  Similarity=0.694  Sum_probs=52.1

Q ss_pred             hHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHhcCCCCCCchhHHhhhccCccC
Q 034937            8 HFKEVLRANPVQAESHDEFSQWLCHVHNVVNRSLGKLVFPCERVDARWGKLECE   61 (78)
Q Consensus         8 ~f~~~l~~~PP~v~SR~~ls~WlC~~HN~VN~kLGKp~FdCs~v~eRW~~~~~~   61 (78)
                      ||+++|+++||+++||++|++|||++||.||++||||+|||+.+.|||++||.|
T Consensus       136 hf~~~lk~~pp~l~SR~~l~~Wl~~~HN~VN~rLgKp~fdc~~~~erw~~G~~d  189 (189)
T 4e0i_A          136 DFEKYIRENAPQVESREELGRWMCEAHNKVNKKLRKPKFDCNFWEKRWKDGWDE  189 (189)
T ss_dssp             HHHHHHHHSCCCCSSHHHHHHHHHHHHHHHHHHTTCCCCCGGGHHHHHTSCCC-
T ss_pred             HHHHHHHHCccccCCHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHhcCCC
Confidence            999999999999999999999999999999999999999999999999999763

>3gwn_A Probable FAD-linked sulfhydryl oxidase R596; five helix bundle, homodimer, disulfide bond, flavoprot oxidoreductase, virion; HET: FAD; 1.78A {Acanthamoeba polyphaga mimivirus}

Probab=99.81  E-value=4.7e-21  Score=126.79  Aligned_cols=51  Identities=20%  Similarity=0.425  Sum_probs=48.3

Q ss_pred             hHHHHHhhCC----CC-CCCHHHHHHHHHHHHHHHHHhcCCCC-CCchhHHhhhccC
Q 034937            8 HFKEVLRANP----VQ-AESHDEFSQWLCHVHNVVNRSLGKLV-FPCERVDARWGKL   58 (78)
Q Consensus         8 ~f~~~l~~~P----P~-v~SR~~ls~WlC~~HN~VN~kLGKp~-FdCs~v~eRW~~~   58 (78)
                      ||+++++++|    |+ |+||++|++|||++||.||++||||. ++|+.|.|||+..
T Consensus        55 hf~~~~~~~p~~~~~~~v~sr~~~~~Wlc~~HN~VN~rLgKp~~~~~~~v~ery~~~  111 (114)
T 3gwn_A           55 SYKKFITTGKTALTNEVLRNRHTLTKWFYDVHNAVNNKLEVDYGLSYEDVVNKYESF  111 (114)
T ss_dssp             HHHHHTTSGGGCCCGGGGSSHHHHHHHHHHHHHHHHHHTTCCCCCCHHHHHHHHHTT
T ss_pred             HHHHHHHHCCCcCCccccCCHHHHHHHHHHHHhHHHHHhCCCCcCCHHHHHHHHHHH
Confidence            9999999999    99 99999999999999999999999997 5789999999863

>3t58_A Sulfhydryl oxidase 1; oxidoreductase; HET: FAD; 2.40A {Mus musculus} PDB: 3t59_A*

Probab=99.35  E-value=3.4e-13  Score=105.74  Aligned_cols=54  Identities=30%  Similarity=0.344  Sum_probs=46.9

Q ss_pred             hHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHhc-----CCCCCCchhHHhhhccCccC
Q 034937            8 HFKEVLRANPVQAESHDEFSQWLCHVHNVVNRSL-----GKLVFPCERVDARWGKLECE   61 (78)
Q Consensus         8 ~f~~~l~~~PP~v~SR~~ls~WlC~~HN~VN~kL-----GKp~FdCs~v~eRW~~~~~~   61 (78)
                      ||+++++++||+|+||+++++|||++||.||+||     ++|.|+|..+--+-.+..|.
T Consensus       427 hF~~~~~~~~~~v~s~~~~~~Wlw~~HN~VN~rL~~~~~~dp~f~k~q~P~~~~C~~C~  485 (519)
T 3t58_A          427 HFEQMAAASMHQVRSPSNAILWLWTSHNRVNARLSGALSEDPHFPKVQWPPRELCSACH  485 (519)
T ss_dssp             HHHHHHHHHGGGCCSHHHHHHHHHHHHHHHHHHHTTCTTCCTTSCCCSSSCTTTCSTTB
T ss_pred             HHHHHHhhCCCcCCCHHHHHHHHHHhhCHHHhhcCCCCCCCCCCCccCCCCchhChhhh
Confidence            9999999999999999999999999999999999     66888887666555555554

>3td7_A FAD-linked sulfhydryl oxidase R596; four helix-bundle, orfan domain, oxidoreductase; HET: FAD; 2.21A {Acanthamoeba polyphaga mimivirus}

Probab=99.33  E-value=3.1e-13  Score=102.46  Aligned_cols=50  Identities=20%  Similarity=0.401  Sum_probs=42.0

Q ss_pred             hHHHHHhhCC-----CCCCCHHHHHHHHHHHHHHHHHhcCCCC-CCchhHHhhhcc
Q 034937            8 HFKEVLRANP-----VQAESHDEFSQWLCHVHNVVNRSLGKLV-FPCERVDARWGK   57 (78)
Q Consensus         8 ~f~~~l~~~P-----P~v~SR~~ls~WlC~~HN~VN~kLGKp~-FdCs~v~eRW~~   57 (78)
                      ||+++|+++|     |.++||++|+.|+|++||.||++||||. +.-..+.++|..
T Consensus        89 HF~k~Lkk~Pv~~~~p~L~SRdsLskWL~~iHN~VNkrLGKP~~lSYedv~kkYE~  144 (295)
T 3td7_A           89 SYKKFITTGKTALTNEVLRNRHTLTKWFYDVHNAVNNKLEVDYGLSYEDVVNKYES  144 (295)
T ss_dssp             HHHHHTTSGGGCCCTTGGGSHHHHHHHHHHHHHHHHHHHTCCCCCCHHHHHHHHHT
T ss_pred             HHHHHHHhccccccccccCCHHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHH
Confidence            9999999988     5589999999999999999999999996 433455566554

>3llk_A Sulfhydryl oxidase 1; disulfide, flavin adenine dinucleotide, alternative splicing, FAD, flavoprotein, glycoprotein, GOLG apparatus, membrane; HET: FAD FLC; 2.00A {Homo sapiens} PDB: 3lli_A*

Probab=99.31  E-value=8.4e-13  Score=98.07  Aligned_cols=54  Identities=28%  Similarity=0.343  Sum_probs=45.8

Q ss_pred             hHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHhc-----CCCCCCchhHHhhhccCccC
Q 034937            8 HFKEVLRANPVQAESHDEFSQWLCHVHNVVNRSL-----GKLVFPCERVDARWGKLECE   61 (78)
Q Consensus         8 ~f~~~l~~~PP~v~SR~~ls~WlC~~HN~VN~kL-----GKp~FdCs~v~eRW~~~~~~   61 (78)
                      ||+++++++||+|+||+++++|||++||.||++|     +.|.|++..+-.+-.+..|-
T Consensus       170 hF~~~~~~~~~~v~sr~~~~lWLw~~HN~VN~rLag~~seDP~fpK~qwP~~~~Cp~C~  228 (261)
T 3llk_A          170 HFEQMAAASMHRVGSPNAAVLWLWSSHNRVNARLAGAPSEDPQFPKVQWPPRELCSACH  228 (261)
T ss_dssp             HHHHHHHHHGGGCCSHHHHHHHHHHHHHHHHHHHTTCTTSCTTSCCCSSSCTTTCSTTB
T ss_pred             HHHHHHhhCCCccCCHHHHHHHHHHhcCHHhhhcCCCCCCCCCCCccCCCCchhChHHH
Confidence            9999999999999999999999999999999999     35788886655555555553

>3qcp_A QSOX from trypanosoma brucei (tbqsox); ERV fold, thioredoxin fold, sulfhydryl oxidase, oxidoreducta; HET: FAD; 2.30A {Trypanosoma brucei} PDB: 3qd9_A*

Probab=98.95  E-value=7.2e-11  Score=92.93  Aligned_cols=48  Identities=23%  Similarity=0.259  Sum_probs=40.7

Q ss_pred             hHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHhcCC------CCCCchhHHhhhccCccC
Q 034937            8 HFKEVLRANPVQAESHDEFSQWLCHVHNVVNRSLGK------LVFPCERVDARWGKLECE   61 (78)
Q Consensus         8 ~f~~~l~~~PP~v~SR~~ls~WlC~~HN~VN~kLGK------p~FdCs~v~eRW~~~~~~   61 (78)
                      ||++++      ++||+++++|||++||.||+||+|      |.|||..+--...+..|.
T Consensus       341 hF~~~~------~~s~~~~~lWlw~~HN~VN~rL~~~~~~~dp~fpk~~~P~~~~C~~C~  394 (470)
T 3qcp_A          341 HFIQFN------FSPNEDPVLQLWRAHNNVNARLANVKDGADPLVPKRQFPTLEACTECY  394 (470)
T ss_dssp             HHTTCC------CCSSSCHHHHHHHHHHHHHHHHTTCCTTSCTTSCCCCSSCTTTCSSSS
T ss_pred             HHHHHh------ccCHHHHHHHHHHHhCHHHHhcCCCCCCCCCCCCccCCCCchhChhhh
Confidence            666654      799999999999999999999998      889998877766676665

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	78
d1jr8a_	105	a.24.15.1 (A:) Thiol oxidase Erv2p {Baker's yeast	2e-14
d1oqca_	112	a.24.15.1 (A:) Augmenter of liver regeneration {Ra	1e-13

>d1jr8a_ a.24.15.1 (A:) Thiol oxidase Erv2p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 105

class: All alpha proteins
fold: Four-helical up-and-down bundle
superfamily: FAD-dependent thiol oxidase
family: FAD-dependent thiol oxidase
domain: Thiol oxidase Erv2p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 60.3 bits (146), Expect = 2e-14
 Identities = 16/50 (32%), Positives = 25/50 (50%)

Query: 6   RMHFKEVLRANPVQAESHDEFSQWLCHVHNVVNRSLGKLVFPCERVDARW 55
             HF +++   PVQ  S    + W CH+HN VN  L K ++ C  +   +
Sbjct: 52  SYHFVKLIEKYPVQTSSRTAAAMWGCHIHNKVNEYLKKDIYDCATILEDY 101

>d1oqca_ a.24.15.1 (A:) Augmenter of liver regeneration {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 112

class: All alpha proteins
fold: Four-helical up-and-down bundle
superfamily: FAD-dependent thiol oxidase
family: FAD-dependent thiol oxidase
domain: Augmenter of liver regeneration
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 58.5 bits (141), Expect = 1e-13
 Identities = 21/50 (42%), Positives = 27/50 (54%)

Query: 6   RMHFKEVLRANPVQAESHDEFSQWLCHVHNVVNRSLGKLVFPCERVDARW 55
               ++ +  +     +   FSQWLC +HN VNR LGK  F C RVD RW
Sbjct: 54  AEDIRKRIDRSQPDTSTRVSFSQWLCRLHNEVNRKLGKPDFDCSRVDERW 103

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	78
d1jr8a_	105	Thiol oxidase Erv2p {Baker's yeast (Saccharomyces	99.83
d1oqca_	112	Augmenter of liver regeneration {Rat (Rattus norve	99.82

>d1jr8a_ a.24.15.1 (A:) Thiol oxidase Erv2p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: Four-helical up-and-down bundle
superfamily: FAD-dependent thiol oxidase
family: FAD-dependent thiol oxidase
domain: Thiol oxidase Erv2p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.83  E-value=2e-21  Score=124.95  Aligned_cols=51  Identities=31%  Similarity=0.600  Sum_probs=50.2

Q ss_pred             hHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHhcCCCCCCchhHHhhhccC
Q 034937            8 HFKEVLRANPVQAESHDEFSQWLCHVHNVVNRSLGKLVFPCERVDARWGKL   58 (78)
Q Consensus         8 ~f~~~l~~~PP~v~SR~~ls~WlC~~HN~VN~kLGKp~FdCs~v~eRW~~~   58 (78)
                      ||.++++++||+++||++|..|+|.+||.||++||||+|+|+.+.++|+.|
T Consensus        54 h~~~~l~~~p~~~~sr~~l~~wl~~~HN~VN~~lgKp~~~~~~~~~~Y~~g  104 (105)
T d1jr8a_          54 HFVKLIEKYPVQTSSRTAAAMWGCHIHNKVNEYLKKDIYDCATILEDYDCG  104 (105)
T ss_dssp             HHHHHHHHSCCCCSSHHHHHHHHHHHHHHHHHHTTCCCCCCTTHHHHTCCC
T ss_pred             HHHHHHHhCccccCCHHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHhcC
Confidence            999999999999999999999999999999999999999999999999887

>d1oqca_ a.24.15.1 (A:) Augmenter of liver regeneration {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: Four-helical up-and-down bundle
superfamily: FAD-dependent thiol oxidase
family: FAD-dependent thiol oxidase
domain: Augmenter of liver regeneration
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.82  E-value=1.4e-20  Score=121.65  Aligned_cols=57  Identities=39%  Similarity=0.759  Sum_probs=55.2

Q ss_pred             hHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHhcCCCCCCchhHHhhhccCccCCCcc
Q 034937            8 HFKEVLRANPVQAESHDEFSQWLCHVHNVVNRSLGKLVFPCERVDARWGKLECEQRAC   65 (78)
Q Consensus         8 ~f~~~l~~~PP~v~SR~~ls~WlC~~HN~VN~kLGKp~FdCs~v~eRW~~~~~~~~~c   65 (78)
                      ||.++++++||.++||++|..|++.+||.||++||||+|+|+.+.++|+.+..+ |+|
T Consensus        56 h~~~~l~~~~~~~~sr~~l~~wl~~~HN~VN~rlgKp~~~~~~~~~~Y~~~~~~-~~~  112 (112)
T d1oqca_          56 DIRKRIDRSQPDTSTRVSFSQWLCRLHNEVNRKLGKPDFDCSRVDERWRDGWKD-GSC  112 (112)
T ss_dssp             HHHHHHHHSCCCCSSHHHHHHHHHHHHHHHHHHTTCCCCCGGGHHHHHTTCCTT-SCC
T ss_pred             HHHHHHHhcCcccCCHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHccCCC-CCC
Confidence            999999999999999999999999999999999999999999999999999775 888