Citrus Sinensis ID: 035030

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70-----
Protein Sequence
MLNILIAGPSTGGSMNPVRTLGPAVAVNNYKAIWIYLTAPILGALCGAGTYSAVKLPEEDTDALAKPATASSFRR
Secondary Structure (PSIPRED)
cccEEEEccccccccccccccccEEEccccccEEEEEEcHHHHHHHHHHHHHHHccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccEEEEEcccccccccccccccHHHHHcccccEEEEEEcHHHHHHHHHHHHHHccccccccccccccccHHHccc
Coil and Loop (DISEMBL)
mlniliagpstggsmnpvrtlgpavAVNNYKAIWIYLTAPIlgalcgagtysavklpeedtdalakpatassfrr
Flexible Loop (DISEMBL)
MLNILiagpstggsmnpvRTLGPAVAVNNYKAIWIYLTAPILGALCGAGTYSAvklpeedtdalakpatassfrr
Low Complexity Region (SEG)
MLNILIAGPSTGGSMNPVRTLGPAVAVNNYKAIWIYLTAPILGALCGAGTYSAVKLPEEDTDALAKPATASSFRR
Disordered region (IsUnstruct)
*****************VRTLGPAVAVNNYKAIWIYLTAPILGALCGAGTYSAVK********************
Disordered Region (DISOPRED)
MLNILIAGPSTGGSMNPVRTLGPAVAVNNYKAIWIYLTAPILGALCGAGTYSAVKL*******************
Disordered Region (DISEMBL)
MLNILIAGPSTGGSMNPVRTLGPAVAVNNYKAIWIYLTAPILGALCGAGTYSAVKLPEEDTD*************
Disordered Region (DISPRO)
MLNILIAGPSTGGSMNPVRTLGPAVAVNNYKAIWIYLTAPILGALCGAGTYSAVKLPE*****************
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MLNILIAGPSTGGSMNPVRTLGPAVAVNNYKAIWIYLTAPILGALCGAGTYSAVKLPEEDTDALAKPATASSFRR
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	75	2.2.26 [Sep-21-2011]
Q9SAI4	305	Aquaporin NIP6-1 OS=Arabi	yes	no	0.946	0.232	0.733	1e-24
Q0IWF3	311	Aquaporin NIP3-1 OS=Oryza	yes	no	0.946	0.228	0.662	1e-20
Q9ATN1	302	Aquaporin NIP3-1 OS=Zea m	N/A	no	0.946	0.235	0.662	1e-20
Q9SV84	304	Probable aquaporin NIP5-1	no	no	0.96	0.236	0.64	2e-20
Q7EYH7	305	Aquaporin NIP3-2 OS=Oryza	no	no	0.746	0.183	0.625	8e-14
Q84S07	278	Aquaporin NIP3-3 OS=Oryza	no	no	0.746	0.201	0.607	1e-13
P08995	271	Nodulin-26 OS=Glycine max	no	no	0.92	0.254	0.463	1e-12
Q9FIZ9	283	Putative aquaporin NIP4-1	no	no	0.96	0.254	0.413	2e-12
Q9AT74	301	Aquaporin NIP2-3 OS=Zea m	N/A	no	0.906	0.225	0.486	9e-12
Q8W036	283	Probable aquaporin NIP4-2	no	no	0.96	0.254	0.4	1e-11

>sp|Q9SAI4|NIP61_ARATH Aquaporin NIP6-1 OS=Arabidopsis thaliana GN=NIP6-1 PE=1 SV=1

 Score =  111 bits (278), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 55/75 (73%), Positives = 60/75 (80%), Gaps = 4/75 (5%)

Query: 1   MLNILIAGPSTGGSMNPVRTLGPAVAVNNYKAIWIYLTAPILGALCGAGTYSAVKLPEED 60
           MLNILIAGP+T  SMNPVRTLGPA+A NNY+AIW+YLTAPILGAL GAGTY+ VKLPEED
Sbjct: 235 MLNILIAGPATSASMNPVRTLGPAIAANNYRAIWVYLTAPILGALIGAGTYTIVKLPEED 294

Query: 61  TDALAKPATASSFRR 75
                 P    SFRR
Sbjct: 295 E----APKERRSFRR 305

Transports glycerol, urea and formamide, in Xenopus laevis oocytes. Very low water transport activity.
Arabidopsis thaliana (taxid: 3702)

>sp|Q0IWF3|NIP31_ORYSJ Aquaporin NIP3-1 OS=Oryza sativa subsp. japonica GN=NIP3-1 PE=2 SV=2

 Score = 98.6 bits (244), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 49/74 (66%), Positives = 57/74 (77%), Gaps = 3/74 (4%)

Query: 2   LNILIAGPSTGGSMNPVRTLGPAVAVNNYKAIWIYLTAPILGALCGAGTYSAVKLPEEDT 61
           LNILIAGP+TGGSMNPVRTLGPAVA  NY+ +WIYL AP LGA+ GAG Y+AVKL +E+ 
Sbjct: 241 LNILIAGPTTGGSMNPVRTLGPAVAAGNYRQLWIYLIAPTLGAVAGAGVYTAVKLRDENG 300

Query: 62  DALAKPATASSFRR 75
           +    P    SFRR
Sbjct: 301 E---TPRPQRSFRR 311

Aquaporins facilitate the transport of water and small neutral solutes across cell membranes.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q9ATN1|NIP31_MAIZE Aquaporin NIP3-1 OS=Zea mays GN=NIP3-1 PE=2 SV=1

 Score = 98.6 bits (244), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 49/74 (66%), Positives = 56/74 (75%), Gaps = 3/74 (4%)

Query: 2   LNILIAGPSTGGSMNPVRTLGPAVAVNNYKAIWIYLTAPILGALCGAGTYSAVKLPEEDT 61
           LNIL+AGP+TGGSMNPVRTLGPAVA  NY+ +WIYL AP LGAL GA  Y AVKL +E+ 
Sbjct: 232 LNILVAGPTTGGSMNPVRTLGPAVAAGNYRQLWIYLLAPTLGALAGASVYKAVKLRDENG 291

Query: 62  DALAKPATASSFRR 75
           +    P T  SFRR
Sbjct: 292 E---TPRTQRSFRR 302

Aquaporins facilitate the transport of water and small neutral solutes across cell membranes.

Zea mays (taxid: 4577)

>sp|Q9SV84|NIP51_ARATH Probable aquaporin NIP5-1 OS=Arabidopsis thaliana GN=NIP5-1 PE=2 SV=1

 Score = 97.8 bits (242), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 48/75 (64%), Positives = 56/75 (74%), Gaps = 3/75 (4%)

Query: 1   MLNILIAGPSTGGSMNPVRTLGPAVAVNNYKAIWIYLTAPILGALCGAGTYSAVKLPEED 60
           MLNIL+AGPSTGGSMNPVRTLGPAVA  NY+++W+YL AP LGA+ GA  Y+ VKL +  
Sbjct: 233 MLNILVAGPSTGGSMNPVRTLGPAVASGNYRSLWVYLVAPTLGAISGAAVYTGVKLNDSV 292

Query: 61  TDALAKPATASSFRR 75
           TD    P    SFRR
Sbjct: 293 TD---PPRPVRSFRR 304

Boric acid transporter. Low water transport activity. Plays an important role as plasma membrane boric acid channel for the boron uptake required for plant growth and development under boron limitation.

Arabidopsis thaliana (taxid: 3702)

>sp|Q7EYH7|NIP32_ORYSJ Aquaporin NIP3-2 OS=Oryza sativa subsp. japonica GN=NIP3-2 PE=2 SV=1

 Score = 75.5 bits (184), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 35/56 (62%), Positives = 41/56 (73%)

Query: 1   MLNILIAGPSTGGSMNPVRTLGPAVAVNNYKAIWIYLTAPILGALCGAGTYSAVKL 56
           M+N L+AGPSTG SMNP RTLGPA+A   Y  IW+YL A  LGA+ G G Y A+KL
Sbjct: 250 MMNALVAGPSTGASMNPARTLGPAIATGRYTQIWVYLVATPLGAVAGEGFYFAIKL 305

Aquaporins facilitate the transport of water and small neutral solutes across cell membranes.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q84S07|NIP33_ORYSJ Aquaporin NIP3-3 OS=Oryza sativa subsp. japonica GN=NIP3-3 PE=2 SV=1

 Score = 75.1 bits (183), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 34/56 (60%), Positives = 41/56 (73%)

Query: 1   MLNILIAGPSTGGSMNPVRTLGPAVAVNNYKAIWIYLTAPILGALCGAGTYSAVKL 56
           M+NIL+AGPSTG SMNP RT+G A+A   Y  IW+YL A  LGA+ G G Y A+KL
Sbjct: 223 MMNILVAGPSTGASMNPARTIGAAIATGRYTQIWVYLVATPLGAIAGTGAYVAIKL 278

Aquaporins facilitate the transport of water and small neutral solutes across cell membranes.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|P08995|NO26_SOYBN Nodulin-26 OS=Glycine max PE=1 SV=2

 Score = 72.0 bits (175), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 32/69 (46%), Positives = 45/69 (65%)

Query: 1   MLNILIAGPSTGGSMNPVRTLGPAVAVNNYKAIWIYLTAPILGALCGAGTYSAVKLPEED 60
           +LN++I GP TG SMNP R+LGPA     Y+ IWIYL AP++GA+ GA  Y+ V+  ++ 
Sbjct: 194 LLNVIIGGPVTGASMNPARSLGPAFVHGEYEGIWIYLLAPVVGAIAGAWVYNIVRYTDKP 253

Query: 61  TDALAKPAT 69
                K A+
Sbjct: 254 LSETTKSAS 262

Aquaporins facilitate the transport of water and small neutral solutes across cell membranes. This aquaporin may function in transporting small molecules across the peribacteroid membranes.

Glycine max (taxid: 3847)

>sp|Q9FIZ9|NIP41_ARATH Putative aquaporin NIP4-1 OS=Arabidopsis thaliana GN=NIP4-1 PE=3 SV=1

 Score = 70.9 bits (172), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 31/75 (41%), Positives = 47/75 (62%), Gaps = 3/75 (4%)

Query: 1   MLNILIAGPSTGGSMNPVRTLGPAVAVNNYKAIWIYLTAPILGALCGAGTYSAVKLPEED 60
           M+N+ +AGP +G SMNP R+LGPA+ +  YK IW+Y+  P+LG + G   Y+ ++  ++ 
Sbjct: 199 MVNVFVAGPISGASMNPARSLGPALVMGVYKHIWVYIVGPVLGVISGGFVYNLIRFTDKP 258

Query: 61  TDALAKPATASSFRR 75
              L K A   SF R
Sbjct: 259 LRELTKSA---SFLR 270

Potential aquaporin, which may facilitate the transport of water and small neutral solutes across cell membranes.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9AT74|NIP23_MAIZE Aquaporin NIP2-3 OS=Zea mays GN=NIP2-3 PE=2 SV=1

 Score = 68.9 bits (167), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 35/72 (48%), Positives = 46/72 (63%), Gaps = 4/72 (5%)

Query: 5   LIAGPSTGGSMNPVRTLGPAVAVNNYKAIWIYLTAPILGALCGAGTYSAVKLPEEDTDAL 64
           + AGP +GGSMNP RTL PAVA N +  +WIY   P++G L GA  Y+ ++   E+  A 
Sbjct: 214 IFAGPVSGGSMNPARTLAPAVASNVFTGLWIYFLGPVVGTLSGAWVYTYIRF--EEAPAA 271

Query: 65  AKPATA--SSFR 74
           AKP T   SSF+
Sbjct: 272 AKPDTQRLSSFK 283

Aquaporins facilitate the transport of water and small neutral solutes across cell membranes.

Zea mays (taxid: 4577)

>sp|Q8W036|NIP42_ARATH Probable aquaporin NIP4-2 OS=Arabidopsis thaliana GN=NIP4-2 PE=2 SV=2

 Score = 68.9 bits (167), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 30/75 (40%), Positives = 45/75 (60%), Gaps = 3/75 (4%)

Query: 1   MLNILIAGPSTGGSMNPVRTLGPAVAVNNYKAIWIYLTAPILGALCGAGTYSAVKLPEED 60
           +LN+ +AGP +G SMNP R+LGPA+ +  YK IW+Y+  P +G   G   Y+ ++  ++ 
Sbjct: 199 ILNVFVAGPISGASMNPARSLGPAIVMGRYKGIWVYIVGPFVGIFAGGFVYNFMRFTDKP 258

Query: 61  TDALAKPATASSFRR 75
              L K A   SF R
Sbjct: 259 LRELTKSA---SFLR 270

Aquaporins facilitate the transport of water and small neutral solutes across cell membranes.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	75
255572751	308	Aquaporin NIP1.1, putative [Ricinus comm	0.986	0.240	0.837	1e-28
224075688	303	aquaporin, MIP family, NIP subfamily [Po	1.0	0.247	0.826	3e-28
394998161	300	aquaporin [Gossypium hirsutum] gi|394998	0.96	0.24	0.8	3e-27
224053394	303	aquaporin, MIP family, NIP subfamily [Po	1.0	0.247	0.8	3e-27
444300808	302	aquaporin protein 10 [Camellia sinensis]	1.0	0.248	0.8	5e-27
356557989	304	PREDICTED: aquaporin NIP6-1-like [Glycin	0.986	0.243	0.826	9e-27
449484793	304	PREDICTED: aquaporin NIP6-1-like [Cucumi	0.986	0.243	0.76	1e-25
449468922	304	PREDICTED: aquaporin NIP6-1-like [Cucumi	0.986	0.243	0.76	1e-25
404351589	304	plasma membrane aluminum transporter [Hy	1.0	0.246	0.76	1e-24
225465510	354	PREDICTED: aquaporin NIP6-1 [Vitis vinif	0.96	0.203	0.770	2e-24

>gi|255572751|ref|XP_002527308.1| Aquaporin NIP1.1, putative [Ricinus communis] gi|223533308|gb|EEF35060.1| Aquaporin NIP1.1, putative [Ricinus communis]

 Score =  130 bits (326), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 62/74 (83%), Positives = 66/74 (89%)

Query: 2   LNILIAGPSTGGSMNPVRTLGPAVAVNNYKAIWIYLTAPILGALCGAGTYSAVKLPEEDT 61
           LNILIAG +TG SMNPVRTLGPA+A NNYKAIW+YLTAPILGALCGAG YSAVKLPEED 
Sbjct: 235 LNILIAGETTGASMNPVRTLGPAIAANNYKAIWVYLTAPILGALCGAGIYSAVKLPEEDG 294

Query: 62  DALAKPATASSFRR 75
           DA  KP+TA SFRR
Sbjct: 295 DAREKPSTARSFRR 308

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224075688|ref|XP_002304723.1| aquaporin, MIP family, NIP subfamily [Populus trichocarpa] gi|222842155|gb|EEE79702.1| aquaporin, MIP family, NIP subfamily [Populus trichocarpa]

 Score =  129 bits (323), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 62/75 (82%), Positives = 66/75 (88%)

Query: 1   MLNILIAGPSTGGSMNPVRTLGPAVAVNNYKAIWIYLTAPILGALCGAGTYSAVKLPEED 60
           MLNI IAG +TG SMNPVRTLGPA+AVNNYKAIWIYLTAPILGALCGAGTYSAVKLPEED
Sbjct: 229 MLNIFIAGETTGASMNPVRTLGPAIAVNNYKAIWIYLTAPILGALCGAGTYSAVKLPEED 288

Query: 61  TDALAKPATASSFRR 75
            D+  K + A SFRR
Sbjct: 289 GDSNEKTSAARSFRR 303

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|394998161|gb|AFN44229.1| aquaporin [Gossypium hirsutum] gi|394998163|gb|AFN44230.1| aquaporin [Gossypium hirsutum]

 Score =  125 bits (315), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 60/75 (80%), Positives = 65/75 (86%), Gaps = 3/75 (4%)

Query: 1   MLNILIAGPSTGGSMNPVRTLGPAVAVNNYKAIWIYLTAPILGALCGAGTYSAVKLPEED 60
           MLNILIAGP TG SMNPVRTLGPA+A NNYKAIW+Y TAPILGALCGAGTY+AVKLPEED
Sbjct: 229 MLNILIAGPITGASMNPVRTLGPAIAANNYKAIWVYFTAPILGALCGAGTYTAVKLPEED 288

Query: 61  TDALAKPATASSFRR 75
            +   KP+T  SFRR
Sbjct: 289 GE---KPSTVRSFRR 300

Source: Gossypium hirsutum

Species: Gossypium hirsutum

Genus: Gossypium

Family: Malvaceae

Order: Malvales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224053394|ref|XP_002297797.1| aquaporin, MIP family, NIP subfamily [Populus trichocarpa] gi|222845055|gb|EEE82602.1| aquaporin, MIP family, NIP subfamily [Populus trichocarpa]

 Score =  125 bits (314), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 60/75 (80%), Positives = 64/75 (85%)

Query: 1   MLNILIAGPSTGGSMNPVRTLGPAVAVNNYKAIWIYLTAPILGALCGAGTYSAVKLPEED 60
           MLNILIAG +TG SMNPVRTLGPA+A NNYKAIW+YLTAPILGALCGAGTYSAVKLPEED
Sbjct: 229 MLNILIAGETTGASMNPVRTLGPAIAANNYKAIWVYLTAPILGALCGAGTYSAVKLPEED 288

Query: 61  TDALAKPATASSFRR 75
            D   K +   SFRR
Sbjct: 289 GDTNEKTSATRSFRR 303

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|444300808|gb|AGD98713.1| aquaporin protein 10 [Camellia sinensis]

 Score =  124 bits (312), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 60/75 (80%), Positives = 65/75 (86%)

Query: 1   MLNILIAGPSTGGSMNPVRTLGPAVAVNNYKAIWIYLTAPILGALCGAGTYSAVKLPEED 60
           MLNILIAG +TG SMNPVRTLGPA+A NNYKAIWIYLTAPILGAL GAG YSAVKLPEED
Sbjct: 228 MLNILIAGETTGASMNPVRTLGPAIAANNYKAIWIYLTAPILGALAGAGVYSAVKLPEED 287

Query: 61  TDALAKPATASSFRR 75
            +   +P+TA SFRR
Sbjct: 288 GNTHDRPSTAHSFRR 302

Source: Camellia sinensis

Species: Camellia sinensis

Genus: Camellia

Family: Theaceae

Order: Ericales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356557989|ref|XP_003547292.1| PREDICTED: aquaporin NIP6-1-like [Glycine max]

 Score =  124 bits (310), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 62/75 (82%), Positives = 66/75 (88%), Gaps = 1/75 (1%)

Query: 1   MLNILIAGPSTGGSMNPVRTLGPAVAVNNYKAIWIYLTAPILGALCGAGTYSAVKLPEED 60
           MLNILIAGP +GGSMNPVRTLGPAVA NNYKAIW+YL APILGAL GAGTY+AVKLPEED
Sbjct: 231 MLNILIAGPVSGGSMNPVRTLGPAVAANNYKAIWVYLVAPILGALAGAGTYTAVKLPEED 290

Query: 61  TDALAKPATASSFRR 75
            DA AK  + SSFRR
Sbjct: 291 DDAKAK-TSISSFRR 304

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449484793|ref|XP_004156981.1| PREDICTED: aquaporin NIP6-1-like [Cucumis sativus]

 Score =  120 bits (300), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 57/75 (76%), Positives = 67/75 (89%), Gaps = 1/75 (1%)

Query: 1   MLNILIAGPSTGGSMNPVRTLGPAVAVNNYKAIWIYLTAPILGALCGAGTYSAVKLPEED 60
           MLN+LIAG +TG SMNPVRTLGPA+AVNN+KAIWIYLTAPILG LCGAG Y+AVKLP++D
Sbjct: 231 MLNVLIAGQTTGASMNPVRTLGPAIAVNNFKAIWIYLTAPILGTLCGAGIYTAVKLPDKD 290

Query: 61  TDALAKPATASSFRR 75
            D+   P+TA+SFRR
Sbjct: 291 GDS-RLPSTAASFRR 304

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449468922|ref|XP_004152170.1| PREDICTED: aquaporin NIP6-1-like [Cucumis sativus]

 Score =  120 bits (300), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 57/75 (76%), Positives = 67/75 (89%), Gaps = 1/75 (1%)

Query: 1   MLNILIAGPSTGGSMNPVRTLGPAVAVNNYKAIWIYLTAPILGALCGAGTYSAVKLPEED 60
           MLN+LIAG +TG SMNPVRTLGPA+AVNN+KAIWIYLTAPILG LCGAG Y+AVKLP++D
Sbjct: 231 MLNVLIAGQTTGASMNPVRTLGPAIAVNNFKAIWIYLTAPILGTLCGAGIYTAVKLPDKD 290

Query: 61  TDALAKPATASSFRR 75
            D+   P+TA+SFRR
Sbjct: 291 GDS-RLPSTAASFRR 304

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|404351589|dbj|BAM44346.1| plasma membrane aluminum transporter [Hydrangea macrophylla]

 Score =  117 bits (292), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 57/75 (76%), Positives = 61/75 (81%)

Query: 1   MLNILIAGPSTGGSMNPVRTLGPAVAVNNYKAIWIYLTAPILGALCGAGTYSAVKLPEED 60
           MLNILIAG STG SMNPVRTLGPA+A NN+K IWIY TAPILGAL GAG YSAVKLPEE 
Sbjct: 230 MLNILIAGESTGASMNPVRTLGPAIAANNFKGIWIYFTAPILGALAGAGVYSAVKLPEEI 289

Query: 61  TDALAKPATASSFRR 75
            +   KP TA SFR+
Sbjct: 290 GNTHDKPETAHSFRQ 304

Source: Hydrangea macrophylla

Species: Hydrangea macrophylla

Genus: Hydrangea

Family: Hydrangeaceae

Order: Cornales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225465510|ref|XP_002272988.1| PREDICTED: aquaporin NIP6-1 [Vitis vinifera] gi|297745093|emb|CBI38932.3| unnamed protein product [Vitis vinifera]

 Score =  116 bits (290), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 57/74 (77%), Positives = 63/74 (85%), Gaps = 2/74 (2%)

Query: 1   MLNILIAGPSTGGSMNPVRTLGPAVAVNNYKAIWIYLTAPILGALCGAGTYSAVKLPEED 60
           MLNILIAG +TG SMNPVRTLGPA+AVNN+KAIW+YLTAPILGALCGAG Y+AVKLPEED
Sbjct: 236 MLNILIAGETTGASMNPVRTLGPAIAVNNFKAIWVYLTAPILGALCGAGVYTAVKLPEED 295

Query: 61  --TDALAKPATASS 72
             T +L K  T  S
Sbjct: 296 GNTHSLNKSMTVQS 309

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	75
TAIR|locus:2025822	305	NIP6;1 "NOD26-like intrinsic p	0.946	0.232	0.746	4.2e-24
TAIR|locus:2122829	304	NIP5;1 "NOD26-like intrinsic p	0.96	0.236	0.64	1e-20
TAIR|locus:2082385	275	NIP7;1 "NOD26-like intrinsic p	0.973	0.265	0.438	7.9e-14
TAIR|locus:2156020	283	NIP4;1 "NOD26-like intrinsic p	0.92	0.243	0.405	8.5e-13
TAIR|locus:2117184	294	NIP1;2 "NOD26-like intrinsic p	0.88	0.224	0.439	1.7e-12
TAIR|locus:2117119	296	NLM1 "NOD26-like major intrins	0.88	0.222	0.484	1.8e-12
TAIR|locus:2156025	283	NIP4;2 "NOD26-like intrinsic p	0.92	0.243	0.391	3.2e-12
UNIPROTKB|Q6Z2T3	298	NIP2-1 "Aquaporin NIP2-1" [Ory	0.906	0.228	0.457	4.1e-12
TAIR|locus:2826185	323	NIP3;1 "NOD26-like intrinsic p	0.893	0.207	0.417	9.3e-12
TAIR|locus:2040904	288	NIP2;1 "NOD26-like intrinsic p	0.96	0.25	0.432	4e-10

TAIR|locus:2025822 NIP6;1 "NOD26-like intrinsic protein 6;1" [Arabidopsis thaliana (taxid:3702)]

 Score = 276 (102.2 bits), Expect = 4.2e-24, P = 4.2e-24
 Identities = 56/75 (74%), Positives = 62/75 (82%)

Query:     1 MLNILIAGPSTGGSMNPVRTLGPAVAVNNYKAIWIYLTAPILGALCGAGTYSAVKLPEED 60
             MLNILIAGP+T  SMNPVRTLGPA+A NNY+AIW+YLTAPILGAL GAGTY+ VKLPEED
Sbjct:   235 MLNILIAGPATSASMNPVRTLGPAIAANNYRAIWVYLTAPILGALIGAGTYTIVKLPEED 294

Query:    61 TDALAKPATASSFRR 75
              +A   P    SFRR
Sbjct:   295 -EA---PKERRSFRR 305

GO:0005215 "transporter activity" evidence=IEA

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006810 "transport" evidence=IEA;ISS

GO:0015250 "water channel activity" evidence=ISS

GO:0016020 "membrane" evidence=IEA;ISS

GO:0015168 "glycerol transmembrane transporter activity" evidence=IDA

GO:0015204 "urea transmembrane transporter activity" evidence=IDA

GO:0005372 "water transmembrane transporter activity" evidence=IDA

GO:0046713 "borate transport" evidence=IMP

GO:0046715 "borate transmembrane transporter activity" evidence=IDA

GO:0080029 "cellular response to boron-containing substance levels" evidence=IEP

GO:0010264 "myo-inositol hexakisphosphate biosynthetic process" evidence=RCA

TAIR|locus:2122829 NIP5;1 "NOD26-like intrinsic protein 5;1" [Arabidopsis thaliana (taxid:3702)]

 Score = 244 (91.0 bits), Expect = 1.0e-20, P = 1.0e-20
 Identities = 48/75 (64%), Positives = 56/75 (74%)

Query:     1 MLNILIAGPSTGGSMNPVRTLGPAVAVNNYKAIWIYLTAPILGALCGAGTYSAVKLPEED 60
             MLNIL+AGPSTGGSMNPVRTLGPAVA  NY+++W+YL AP LGA+ GA  Y+ VKL +  
Sbjct:   233 MLNILVAGPSTGGSMNPVRTLGPAVASGNYRSLWVYLVAPTLGAISGAAVYTGVKLNDSV 292

Query:    61 TDALAKPATASSFRR 75
             TD    P    SFRR
Sbjct:   293 TDP---PRPVRSFRR 304

GO:0005215 "transporter activity" evidence=IEA

GO:0006810 "transport" evidence=IEA;ISS

GO:0015250 "water channel activity" evidence=ISS;IDA

GO:0016020 "membrane" evidence=ISS

GO:0005886 "plasma membrane" evidence=IDA

GO:0010036 "response to boron-containing substance" evidence=IEP;IMP

GO:0046713 "borate transport" evidence=IDA

GO:0046715 "borate transmembrane transporter activity" evidence=IDA

GO:0080138 "borate uptake transmembrane transporter activity" evidence=IDA

GO:0080029 "cellular response to boron-containing substance levels" evidence=IEP

GO:0015105 "arsenite transmembrane transporter activity" evidence=IDA

GO:0015700 "arsenite transport" evidence=IDA

GO:0046685 "response to arsenic-containing substance" evidence=RCA;IMP

GO:0016328 "lateral plasma membrane" evidence=IDA

GO:0000041 "transition metal ion transport" evidence=RCA

GO:0006826 "iron ion transport" evidence=RCA

GO:0010106 "cellular response to iron ion starvation" evidence=RCA

GO:0010167 "response to nitrate" evidence=RCA

GO:0015706 "nitrate transport" evidence=RCA

TAIR|locus:2082385 NIP7;1 "NOD26-like intrinsic protein 7;1" [Arabidopsis thaliana (taxid:3702)]

 Score = 179 (68.1 bits), Expect = 7.9e-14, P = 7.9e-14
 Identities = 32/73 (43%), Positives = 48/73 (65%)

Query:     2 LNILIAGPSTGGSMNPVRTLGPAVAVNNYKAIWIYLTAPILGALCGAGTYSAVKLPEEDT 61
             L +LI GP +GGSMNP R+LGPAV   +++ +WIY+TAP++GA+ G  TY ++ L     
Sbjct:   203 LGVLITGPISGGSMNPARSLGPAVVAWDFEDLWIYMTAPVIGAIIGVLTYRSISLKTRPC 262

Query:    62 DALAKPATASSFR 74
              +   P+ +S  R
Sbjct:   263 PSPVSPSVSSLLR 275

GO:0005215 "transporter activity" evidence=IEA

GO:0006810 "transport" evidence=IEA;ISS

GO:0015250 "water channel activity" evidence=ISS

GO:0016020 "membrane" evidence=IEA;ISS

GO:0035445 "borate transmembrane transport" evidence=IDA

GO:0046715 "borate transmembrane transporter activity" evidence=IDA

GO:0006863 "purine nucleobase transport" evidence=RCA

TAIR|locus:2156020 NIP4;1 "NOD26-like intrinsic protein 4;1" [Arabidopsis thaliana (taxid:3702)]

 Score = 171 (65.3 bits), Expect = 8.5e-13, P = 8.5e-13
 Identities = 28/69 (40%), Positives = 45/69 (65%)

Query:     1 MLNILIAGPSTGGSMNPVRTLGPAVAVNNYKAIWIYLTAPILGALCGAGTYSAVKLPEED 60
             M+N+ +AGP +G SMNP R+LGPA+ +  YK IW+Y+  P+LG + G   Y+ ++  ++ 
Sbjct:   199 MVNVFVAGPISGASMNPARSLGPALVMGVYKHIWVYIVGPVLGVISGGFVYNLIRFTDKP 258

Query:    61 TDALAKPAT 69
                L K A+
Sbjct:   259 LRELTKSAS 267

GO:0005215 "transporter activity" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0006810 "transport" evidence=IEA;ISS

GO:0006833 "water transport" evidence=IEA

GO:0015250 "water channel activity" evidence=ISS

GO:0016020 "membrane" evidence=IEA;ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

TAIR|locus:2117184 NIP1;2 "NOD26-like intrinsic protein 1;2" [Arabidopsis thaliana (taxid:3702)]

 Score = 169 (64.5 bits), Expect = 1.7e-12, P = 1.7e-12
 Identities = 29/66 (43%), Positives = 47/66 (71%)

Query:     1 MLNILIAGPSTGGSMNPVRTLGPAVAVNNYKAIWIYLTAPILGALCGAGTYSAVKLPEED 60
             +LN++IAGP +G SMNP R+LGPA+  + Y+ +WIY+ +PI+GA+ GA  Y+ V+  ++ 
Sbjct:   215 LLNVIIAGPVSGASMNPGRSLGPAMVYSCYRGLWIYIVSPIVGAVSGAWVYNMVRYTDKP 274

Query:    61 TDALAK 66
                + K
Sbjct:   275 LREITK 280

GO:0005215 "transporter activity" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0006810 "transport" evidence=IEA;ISS

GO:0006833 "water transport" evidence=IEA

GO:0015250 "water channel activity" evidence=ISS

GO:0016020 "membrane" evidence=IEA;ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

GO:0005886 "plasma membrane" evidence=IDA

GO:0080170 "hydrogen peroxide transmembrane transport" evidence=IDA

GO:0015105 "arsenite transmembrane transporter activity" evidence=IDA

GO:0015700 "arsenite transport" evidence=IDA

GO:0046685 "response to arsenic-containing substance" evidence=RCA;IMP

GO:0006857 "oligopeptide transport" evidence=RCA

TAIR|locus:2117119 NLM1 "NOD26-like major intrinsic protein 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 169 (64.5 bits), Expect = 1.8e-12, P = 1.8e-12
 Identities = 32/66 (48%), Positives = 43/66 (65%)

Query:     1 MLNILIAGPSTGGSMNPVRTLGPAVAVNNYKAIWIYLTAPILGALCGAGTYSAVKLPEED 60
             +LN+LIA P +  SMNP R+LGPA+    YK IWIYL AP LGA+ GA  Y+ V+  ++ 
Sbjct:   218 LLNVLIAAPVSSASMNPGRSLGPALVYGCYKGIWIYLVAPTLGAIAGAWVYNTVRYTDKP 277

Query:    61 TDALAK 66
                + K
Sbjct:   278 LREITK 283

GO:0005215 "transporter activity" evidence=IEA

GO:0006810 "transport" evidence=IEA;ISS

GO:0006833 "water transport" evidence=IEA

GO:0015250 "water channel activity" evidence=ISS;IDA

GO:0016020 "membrane" evidence=IEA;ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

GO:0005886 "plasma membrane" evidence=IDA

GO:0015105 "arsenite transmembrane transporter activity" evidence=IDA

GO:0015700 "arsenite transport" evidence=IDA

GO:0046685 "response to arsenic-containing substance" evidence=RCA;IMP

GO:0031347 "regulation of defense response" evidence=IMP

GO:0005515 "protein binding" evidence=IPI

TAIR|locus:2156025 NIP4;2 "NOD26-like intrinsic protein 4;2" [Arabidopsis thaliana (taxid:3702)]

 Score = 166 (63.5 bits), Expect = 3.2e-12, P = 3.2e-12
 Identities = 27/69 (39%), Positives = 43/69 (62%)

Query:     1 MLNILIAGPSTGGSMNPVRTLGPAVAVNNYKAIWIYLTAPILGALCGAGTYSAVKLPEED 60
             +LN+ +AGP +G SMNP R+LGPA+ +  YK IW+Y+  P +G   G   Y+ ++  ++ 
Sbjct:   199 ILNVFVAGPISGASMNPARSLGPAIVMGRYKGIWVYIVGPFVGIFAGGFVYNFMRFTDKP 258

Query:    61 TDALAKPAT 69
                L K A+
Sbjct:   259 LRELTKSAS 267

GO:0005215 "transporter activity" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0006810 "transport" evidence=IEA;ISS

GO:0006833 "water transport" evidence=IEA

GO:0015250 "water channel activity" evidence=ISS

GO:0016020 "membrane" evidence=IEA;ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

UNIPROTKB|Q6Z2T3 NIP2-1 "Aquaporin NIP2-1" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 166 (63.5 bits), Expect = 4.1e-12, P = 4.1e-12
 Identities = 32/70 (45%), Positives = 43/70 (61%)

Query:     5 LIAGPSTGGSMNPVRTLGPAVAVNNYKAIWIYLTAPILGALCGAGTYSAVKLPEEDTDAL 64
             + AG  +GGSMNP RTLGPA+A N +  +WIY   P++G L GA TY+ ++   EDT   
Sbjct:   208 IFAGAISGGSMNPARTLGPALASNKFDGLWIYFLGPVMGTLSGAWTYTFIRF--EDTPKE 265

Query:    65 AKPATASSFR 74
                   SSF+
Sbjct:   266 GSSQKLSSFK 275

GO:0005215 "transporter activity" evidence=ISS

GO:0015115 "silicate transmembrane transporter activity" evidence=IDA

GO:0015708 "silicate transport" evidence=IMP

GO:0016020 "membrane" evidence=IDA

GO:0048226 "Casparian strip" evidence=IDA

TAIR|locus:2826185 NIP3;1 "NOD26-like intrinsic protein 3;1" [Arabidopsis thaliana (taxid:3702)]

 Score = 164 (62.8 bits), Expect = 9.3e-12, P = 9.3e-12
 Identities = 28/67 (41%), Positives = 46/67 (68%)

Query:     1 MLNILIAGPSTGGSMNPVRTLGPAVAVNNYKAIWIYLTAPILGALCGAGTYSAVKLPEED 60
             +L+IL +GP +G SMNP R+LGPA+    YK +W+Y+ +P++GAL GA TY  ++  ++ 
Sbjct:   206 VLDILFSGPISGASMNPARSLGPALIWGCYKDLWLYIVSPVIGALSGAWTYGLLRSTKKS 265

Query:    61 TDALAKP 67
                + +P
Sbjct:   266 YSEIIRP 272

GO:0005215 "transporter activity" evidence=IEA

GO:0006810 "transport" evidence=IEA;ISS

GO:0006833 "water transport" evidence=IEA

GO:0016020 "membrane" evidence=IEA;ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

TAIR|locus:2040904 NIP2;1 "NOD26-like intrinsic protein 2;1" [Arabidopsis thaliana (taxid:3702)]

 Score = 148 (57.2 bits), Expect = 4.0e-10, P = 4.0e-10
 Identities = 32/74 (43%), Positives = 44/74 (59%)

Query:     2 LNILIAGPSTGGSMNPVRTLGPAVAVNNYKAIWIYLTAPILGALCGAGTYSAVKLPEEDT 61
             LN++ AG  +G SMNP R++GPA+    YK IWIYL AP LGA+ GA  +  +   +   
Sbjct:   211 LNVIFAGEVSGASMNPARSIGPALVWGCYKGIWIYLLAPTLGAVSGALIHKMLPSIQNAE 270

Query:    62 DALAKPATASSFRR 75
                +K  T SS +R
Sbjct:   271 PEFSK--TGSSHKR 282

GO:0005215 "transporter activity" evidence=IEA

GO:0006810 "transport" evidence=IEA;ISS

GO:0006833 "water transport" evidence=IEA

GO:0015250 "water channel activity" evidence=ISS

GO:0016020 "membrane" evidence=IEA;ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

GO:0005783 "endoplasmic reticulum" evidence=IDA

GO:0001666 "response to hypoxia" evidence=IEP

GO:0005886 "plasma membrane" evidence=IDA

GO:0015129 "lactate transmembrane transporter activity" evidence=IDA

GO:0015727 "lactate transport" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9SAI4	NIP61_ARATH	No assigned EC number	0.7333	0.9466	0.2327	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	75
PLN00026	298	PLN00026, PLN00026, aquaporin NIP; Provisional	6e-36
PLN00184	296	PLN00184, PLN00184, aquaporin NIP1; Provisional	1e-16
PLN00183	274	PLN00183, PLN00183, putative aquaporin NIP7; Provi	4e-16
PLN00182	283	PLN00182, PLN00182, putative aquaporin NIP4; Provi	4e-16
pfam00230	218	pfam00230, MIP, Major intrinsic protein	4e-12
cd00333	228	cd00333, MIP, Major intrinsic protein (MIP) superf	7e-11
PLN00166	250	PLN00166, PLN00166, aquaporin TIP2; Provisional	1e-09
TIGR00861	216	TIGR00861, MIP, MIP family channel proteins	2e-09
PLN00167	256	PLN00167, PLN00167, aquaporin TIP5; Provisional	4e-07
COG0580	241	COG0580, GlpF, Glycerol uptake facilitator and rel	2e-06
PRK05420	231	PRK05420, PRK05420, aquaporin Z; Provisional	8e-05
PLN00027	252	PLN00027, PLN00027, aquaporin TIP; Provisional	1e-04

>gnl|CDD|177663 PLN00026, PLN00026, aquaporin NIP; Provisional

 Score =  121 bits (306), Expect = 6e-36
 Identities = 57/75 (76%), Positives = 60/75 (80%), Gaps = 3/75 (4%)

Query: 1   MLNILIAGPSTGGSMNPVRTLGPAVAVNNYKAIWIYLTAPILGALCGAGTYSAVKLPEED 60
           MLNIL+AGPSTGGSMNPVRTLGPAVA  NY+AIWIYL AP LGAL GAGTY+AVKL EED
Sbjct: 227 MLNILVAGPSTGGSMNPVRTLGPAVAAGNYRAIWIYLVAPTLGALAGAGTYTAVKLREED 286

Query: 61  TDALAKPATASSFRR 75
            D    P    SFRR
Sbjct: 287 GDP---PRPVRSFRR 298

Length = 298

>gnl|CDD|177778 PLN00184, PLN00184, aquaporin NIP1; Provisional

 Score = 71.2 bits (174), Expect = 1e-16
 Identities = 31/69 (44%), Positives = 44/69 (63%)

Query: 1   MLNILIAGPSTGGSMNPVRTLGPAVAVNNYKAIWIYLTAPILGALCGAGTYSAVKLPEED 60
           +LN+LIA P +  SMNP R+LGPA+    YK IWIY+ AP LGA+ GA  Y+ V+  ++ 
Sbjct: 218 LLNVLIAAPVSSASMNPGRSLGPAMVYGCYKGIWIYIVAPTLGAIAGAWVYNTVRYTDKP 277

Query: 61  TDALAKPAT 69
              + K  +
Sbjct: 278 LREITKSGS 286

Length = 296

>gnl|CDD|215092 PLN00183, PLN00183, putative aquaporin NIP7; Provisional

 Score = 69.5 bits (170), Expect = 4e-16
 Identities = 31/70 (44%), Positives = 46/70 (65%)

Query: 2   LNILIAGPSTGGSMNPVRTLGPAVAVNNYKAIWIYLTAPILGALCGAGTYSAVKLPEEDT 61
           L +LI GP +GGSMNP R+LGPA+   ++K IWIY+TAP +GA+ GA  +  ++L  +  
Sbjct: 202 LAVLITGPVSGGSMNPARSLGPAIVSWDFKDIWIYITAPTIGAVAGALMFHLLRLRTQPC 261

Query: 62  DALAKPATAS 71
              + P T+ 
Sbjct: 262 SPNSSPNTSL 271

Length = 274

>gnl|CDD|165748 PLN00182, PLN00182, putative aquaporin NIP4; Provisional

 Score = 69.6 bits (170), Expect = 4e-16
 Identities = 27/69 (39%), Positives = 44/69 (63%)

Query: 1   MLNILIAGPSTGGSMNPVRTLGPAVAVNNYKAIWIYLTAPILGALCGAGTYSAVKLPEED 60
           +LN+ +AGP +G SMNP R+LGPA+ +  YK IW+Y+  P +G + G   Y+ ++  ++ 
Sbjct: 199 ILNVFVAGPISGASMNPARSLGPAIVMGRYKGIWVYIVGPFVGIIAGGFVYNLIRFTDKP 258

Query: 61  TDALAKPAT 69
              L K A+
Sbjct: 259 LRELTKSAS 267

Length = 283

>gnl|CDD|215807 pfam00230, MIP, Major intrinsic protein

 Score = 58.1 bits (141), Expect = 4e-12
 Identities = 23/50 (46%), Positives = 29/50 (58%)

Query: 2   LNILIAGPSTGGSMNPVRTLGPAVAVNNYKAIWIYLTAPILGALCGAGTY 51
           LN L  GP TG SMNP R+ GPAV +  +   W+Y   P++GA   A  Y
Sbjct: 169 LNHLAGGPYTGASMNPARSFGPAVVLWKWDDHWVYWVGPLIGAALAALVY 218

MIP (Major Intrinsic Protein) family proteins exhibit essentially two distinct types of channel properties: (1) specific water transport by the aquaporins, and (2) small neutral solutes transport, such as glycerol by the glycerol facilitators. Length = 218

>gnl|CDD|238204 cd00333, MIP, Major intrinsic protein (MIP) superfamily

 Score = 55.0 bits (133), Expect = 7e-11
 Identities = 22/54 (40%), Positives = 29/54 (53%), Gaps = 3/54 (5%)

Query: 1   MLNILIAGPSTGGSMNPVRTLGPAVAVNNYKAI---WIYLTAPILGALCGAGTY 51
               L  GP TG SMNP R+LGPA+     +     W+Y   P++GA+ GA  Y
Sbjct: 172 AAIGLAGGPITGASMNPARSLGPALFTGLARHWHYFWVYWVGPLIGAIAGALVY 225

Members of the MIP superfamily function as membrane channels that selectively transport water, small neutral molecules, and ions out of and between cells. The channel proteins share a common fold: the N-terminal cytosolic portion followed by six transmembrane helices, which might have arisen through gene duplication. On the basis of sequence similarity and functional characteristics, the superfamily can be subdivided into two major groups: water-selective channels called aquaporins (AQPs) and glycerol uptake facilitators (GlpFs). AQPs are found in all three kingdoms of life, while GlpFs have been characterized only within microorganisms. Length = 228

>gnl|CDD|165733 PLN00166, PLN00166, aquaporin TIP2; Provisional

 Score = 51.9 bits (124), Expect = 1e-09
 Identities = 30/65 (46%), Positives = 39/65 (60%), Gaps = 8/65 (12%)

Query: 3   NILIAGPSTGGSMNPVRTLGPAVAVNNYKAIWIYLTAPIL-GALCG-------AGTYSAV 54
           NIL AGP +GGSMNP R+ GPAV   ++  IWIY   P++ GAL G        G+Y+A 
Sbjct: 184 NILAAGPFSGGSMNPARSFGPAVVSGDFSQIWIYWVGPLVGGALAGLIYGDVFIGSYAAA 243

Query: 55  KLPEE 59
              E+
Sbjct: 244 PTSED 248

Length = 250

>gnl|CDD|233156 TIGR00861, MIP, MIP family channel proteins

 Score = 50.8 bits (122), Expect = 2e-09
 Identities = 23/52 (44%), Positives = 29/52 (55%), Gaps = 2/52 (3%)

Query: 2   LNILIAGPSTGGSMNPVRTLGPAVAVN--NYKAIWIYLTAPILGALCGAGTY 51
           L  L  GP TG  MNP R+LGPA+      +   W+Y   PI+GA+ GA  Y
Sbjct: 165 LIHLSMGPYTGTGMNPARSLGPALFAGLAGWGNHWVYWVGPIIGAILGALVY 216

1.A.8 The Major Intrinsic Protein (MIP) FamilyThe MIP family is large and diverse, possessing over 100 members that all form transmembrane channels. These channel proteins function in water, smallcarbohydrate (e.g., glycerol), urea, NH3, CO2 and possibly ion transport by an energy independent mechanism. They are found ubiquitously in bacteria, archaeaand eukaryotes. The MIP family contains two major groups of channels: aquaporins and glycerol facilitators.The known aquaporins cluster loosely together as do the known glycerol facilitators. MIP family proteins are believed to form aqueous pores that selectively allow passive transport of their solute(s) across the membrane with minimal apparent recognition. Aquaporins selectively transport water (but not glycerol) while glycerol facilitators selectively transport glycerol but not water. Some aquaporins can transport NH3 and CO2. Glycerol facilitators function as solute nonspecific channels, and may transport glycerol, dihydroxyacetone, propanediol, urea and other small neutral molecules in physiologically importantprocesses. Some members of the family, including the yeast FPS protein (TC #1.A.8.5.1) and tobacco NtTIPA may transport both water and small solutes [Transport and binding proteins, Unknown substrate]. Length = 216

>gnl|CDD|215085 PLN00167, PLN00167, aquaporin TIP5; Provisional

 Score = 44.5 bits (105), Expect = 4e-07
 Identities = 23/58 (39%), Positives = 30/58 (51%)

Query: 3   NILIAGPSTGGSMNPVRTLGPAVAVNNYKAIWIYLTAPILGALCGAGTYSAVKLPEED 60
           N+L AGP +GGSMNP    G AV   ++K   +Y   P+LG       Y  V  P +D
Sbjct: 187 NVLAAGPFSGGSMNPACAFGSAVVAGSFKNQAVYWVGPLLGGAVAGLLYDNVVFPTQD 244

Length = 256

>gnl|CDD|223653 COG0580, GlpF, Glycerol uptake facilitator and related permeases (Major Intrinsic Protein Family) [Carbohydrate transport and metabolism]

 Score = 42.6 bits (101), Expect = 2e-06
 Identities = 21/57 (36%), Positives = 30/57 (52%), Gaps = 9/57 (15%)

Query: 4   ILIAGPSTGGSMNPVRTLGPAVAVN---------NYKAIWIYLTAPILGALCGAGTY 51
            L  GP+TG ++NP R LGP +A +         +    WI +  PI+GA+ GA  Y
Sbjct: 179 GLSLGPTTGTAINPARDLGPRLAHSLAGWAANKGDSSYFWIPVIGPIVGAILGALLY 235

Length = 241

>gnl|CDD|235453 PRK05420, PRK05420, aquaporin Z; Provisional

 Score = 38.0 bits (89), Expect = 8e-05
 Identities = 19/52 (36%), Positives = 31/52 (59%), Gaps = 2/52 (3%)

Query: 5   LIAGPSTGGSMNPVRTLGPAVAVNNY--KAIWIYLTAPILGALCGAGTYSAV 54
           LI+ P T  S+NP R+ G A+ V  +  + +W++  API+GA+ G   Y  +
Sbjct: 175 LISIPVTNTSVNPARSTGVALFVGGWALEQLWLFWVAPIVGAIIGGLIYRLL 226

Length = 231

>gnl|CDD|177664 PLN00027, PLN00027, aquaporin TIP; Provisional

 Score = 37.5 bits (87), Expect = 1e-04
 Identities = 17/42 (40%), Positives = 22/42 (52%)

Query: 3   NILIAGPSTGGSMNPVRTLGPAVAVNNYKAIWIYLTAPILGA 44
           NIL  G   G SMNP  + GPAV    +   W+Y   P++G 
Sbjct: 186 NILAGGAFDGASMNPAVSFGPAVVSWTWTNHWVYWAGPLIGG 227

Length = 252

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	75
KOG0223	238	consensus Aquaporin (major intrinsic protein famil	99.81
PLN00026	298	aquaporin NIP; Provisional	99.8
PLN00184	296	aquaporin NIP1; Provisional	99.76
PLN00027	252	aquaporin TIP; Provisional	99.7
PLN00166	250	aquaporin TIP2; Provisional	99.68
PLN00167	256	aquaporin TIP5; Provisional	99.66
PRK05420	231	aquaporin Z; Provisional	99.65
PLN00182	283	putative aquaporin NIP4; Provisional	99.63
PLN00183	274	putative aquaporin NIP7; Provisional	99.61
PTZ00016	294	aquaglyceroporin; Provisional	99.6
cd00333	228	MIP Major intrinsic protein (MIP) superfamily. Mem	99.48
PF00230	227	MIP: Major intrinsic protein; InterPro: IPR000425	99.44
TIGR00861	216	MIP MIP family channel proteins. processes. Some m	99.42
PLN00184	296	aquaporin NIP1; Provisional	99.37
PLN00026	298	aquaporin NIP; Provisional	99.36
COG0580	241	GlpF Glycerol uptake facilitator and related perme	99.31
PLN00166	250	aquaporin TIP2; Provisional	99.28
PRK05420	231	aquaporin Z; Provisional	99.22
PLN00183	274	putative aquaporin NIP7; Provisional	99.21
PLN00182	283	putative aquaporin NIP4; Provisional	99.21
PLN00167	256	aquaporin TIP5; Provisional	99.2
TIGR00861	216	MIP MIP family channel proteins. processes. Some m	99.17
PLN00027	252	aquaporin TIP; Provisional	99.16
PTZ00016	294	aquaglyceroporin; Provisional	99.15
COG0580	241	GlpF Glycerol uptake facilitator and related perme	99.15
KOG0224	316	consensus Aquaporin (major intrinsic protein famil	99.13
cd00333	228	MIP Major intrinsic protein (MIP) superfamily. Mem	99.12
KOG0224	316	consensus Aquaporin (major intrinsic protein famil	99.06
KOG0223	238	consensus Aquaporin (major intrinsic protein famil	98.91
PF00230	227	MIP: Major intrinsic protein; InterPro: IPR000425	98.8

>KOG0223 consensus Aquaporin (major intrinsic protein family) [Carbohydrate transport and metabolism]

Probab=99.81  E-value=8.5e-21  Score=134.21  Aligned_cols=57  Identities=51%  Similarity=0.906  Sum_probs=54.6

Q ss_pred             eEEEEecccCCCccChHhhHHHHhcccccCceeeehhhhhHHHHHHHHHHHhhcCCC
Q 035030            2 LNILIAGPSTGGSMNPVRTLGPAVAVNNYKAIWIYLTAPILGALCGAGTYSAVKLPE   58 (75)
Q Consensus         2 ~~v~~~g~~sG~~lNPArs~g~av~~~~~~~~wvy~vgp~lGa~la~~~~~~l~~~~   58 (75)
                      +.+++++++||++|||||+|||++..+.|++||+||+||++|+++++++|++++.|+
T Consensus       172 ~~~l~~g~~TG~sMNPArSfGpAvv~~~w~~hwiYwvgP~~Ga~~a~~~y~~v~~~~  228 (238)
T KOG0223|consen  172 LNILAAGPFTGASMNPARSFGPAVVYGSWDDHWIYWVGPLLGAILAALIYRLVFIPD  228 (238)
T ss_pred             HHHHeecCcCcCccCcHHHhhHHHHhcCCCcEEEEEhhHHHHHHHHHHHHHHhccCc
Confidence            356788999999999999999999999999999999999999999999999999998

>PLN00026 aquaporin NIP; Provisional

Probab=99.80  E-value=7.5e-21  Score=137.91  Aligned_cols=70  Identities=79%  Similarity=1.248  Sum_probs=62.5

Q ss_pred             EEEEecccCCCccChHhhHHHHhcccccCceeeehhhhhHHHHHHHHHHHhhcCCCcccccccCCCccccccC
Q 035030            3 NILIAGPSTGGSMNPVRTLGPAVAVNNYKAIWIYLTAPILGALCGAGTYSAVKLPEEDTDALAKPATASSFRR   75 (75)
Q Consensus         3 ~v~~~g~~sG~~lNPArs~g~av~~~~~~~~wvy~vgp~lGa~la~~~~~~l~~~~~~~~~~~~~~~~~~~~~   75 (75)
                      .+++.+++||++|||||+|+|+++.++|+++|+||+||++|+++++++|++++.++.+.+   +|+..+||||
T Consensus       229 ~~l~~g~~TGa~mNPARtlgPal~~~~~~~~wVy~vaPilGAilga~ly~~~~~~~~~~~---~~~~~~~~~~  298 (298)
T PLN00026        229 NILVAGPSTGGSMNPVRTLGPAVAAGNYRAIWIYLVAPTLGALAGAGTYTAVKLREEDGD---PPRPVRSFRR  298 (298)
T ss_pred             HHHHhcccCccccChHHHHHHHHhcCCchheeHHHHHHHHHHHHHHHHHHHHhCcccccc---ChhhhhhccC
Confidence            345678899999999999999999999999999999999999999999999988888765   4455789998

>PLN00184 aquaporin NIP1; Provisional

Probab=99.76  E-value=7.9e-20  Score=132.38  Aligned_cols=72  Identities=40%  Similarity=0.724  Sum_probs=62.5

Q ss_pred             EEEecccCCCccChHhhHHHHhcccccCceeeehhhhhHHHHHHHHHHHhhcCCCccc-ccccCCCccccccC
Q 035030            4 ILIAGPSTGGSMNPVRTLGPAVAVNNYKAIWIYLTAPILGALCGAGTYSAVKLPEEDT-DALAKPATASSFRR   75 (75)
Q Consensus         4 v~~~g~~sG~~lNPArs~g~av~~~~~~~~wvy~vgp~lGa~la~~~~~~l~~~~~~~-~~~~~~~~~~~~~~   75 (75)
                      +++.+++||++|||||+|||+++.+.|+++||||+||++|+++++++|++++.++++. |...+..+.|+.|+
T Consensus       221 ~~~~g~~TG~smNPAR~~GPal~~~~~~~~WVy~vgPilGa~laal~y~~l~~~~~~~~~~~~~~~~~~~~~~  293 (296)
T PLN00184        221 VLIAAPVSSASMNPGRSLGPAMVYGCYKGIWIYIVAPTLGAIAGAWVYNTVRYTDKPLREITKSGSFLKTVRI  293 (296)
T ss_pred             HHHhcccCccccCchhhHHHHHHhhcccccchHHhHHHHHHHHHHHHHHHHhcCCCcchhhccchHHHhhhcc
Confidence            4567899999999999999999999999999999999999999999999999877776 55555556776664

>PLN00027 aquaporin TIP; Provisional

Probab=99.70  E-value=4.5e-18  Score=120.40  Aligned_cols=59  Identities=29%  Similarity=0.584  Sum_probs=54.1

Q ss_pred             EEEecccCCCccChHhhHHHHhcccccCceeeehhhhhHHHHHHHHHHHhhcCCCcccc
Q 035030            4 ILIAGPSTGGSMNPVRTLGPAVAVNNYKAIWIYLTAPILGALCGAGTYSAVKLPEEDTD   62 (75)
Q Consensus         4 v~~~g~~sG~~lNPArs~g~av~~~~~~~~wvy~vgp~lGa~la~~~~~~l~~~~~~~~   62 (75)
                      +++++++||++|||||+|||+++.++|+++|+||+||++|+++++++|++++.+++.+|
T Consensus       187 ~~~~g~~TG~~~NPAR~~gPal~~~~~~~~wvy~vgP~~Ga~laa~~y~~l~~~~~~~~  245 (252)
T PLN00027        187 ILAGGAFDGASMNPAVSFGPAVVSWTWTNHWVYWAGPLIGGGIAGLVYELIFIGSTTHE  245 (252)
T ss_pred             HHhcccccccccCcchhHHHHHHhhcchhhhHHHHHHHHHHHHHHHHHHHHhcCCcccc
Confidence            45678899999999999999999999999999999999999999999999998766555

>PLN00166 aquaporin TIP2; Provisional

Probab=99.68  E-value=1.2e-17  Score=118.35  Aligned_cols=57  Identities=42%  Similarity=0.803  Sum_probs=51.7

Q ss_pred             EEEecccCCCccChHhhHHHHhcccccCceeeehhhhhHHHHHHHHHHHhhcCCCcc
Q 035030            4 ILIAGPSTGGSMNPVRTLGPAVAVNNYKAIWIYLTAPILGALCGAGTYSAVKLPEED   60 (75)
Q Consensus         4 v~~~g~~sG~~lNPArs~g~av~~~~~~~~wvy~vgp~lGa~la~~~~~~l~~~~~~   60 (75)
                      ++.++++||++|||||+|||+++.++|+++|+||+||++|+++++++|++++.+.+.
T Consensus       185 ~~~~~~~tG~~~NPAR~~gPal~~~~~~~~wvywvgPi~Ga~~aa~~y~~l~~~~~~  241 (250)
T PLN00166        185 ILAAGPFSGGSMNPARSFGPAVVSGDFSQIWIYWVGPLVGGALAGLIYGDVFIGSYA  241 (250)
T ss_pred             HHcccCCCCCccCchHhhHHHHhcCCCcccchhhHHHHHHHHHHHHHHHHHhcccCC
Confidence            567889999999999999999999999999999999999999999999988754444

>PLN00167 aquaporin TIP5; Provisional

Probab=99.66  E-value=2.6e-17  Score=117.06  Aligned_cols=59  Identities=37%  Similarity=0.687  Sum_probs=54.8

Q ss_pred             EEEecccCCCccChHhhHHHHhcccccCceeeehhhhhHHHHHHHHHHHhhcCCCcccc
Q 035030            4 ILIAGPSTGGSMNPVRTLGPAVAVNNYKAIWIYLTAPILGALCGAGTYSAVKLPEEDTD   62 (75)
Q Consensus         4 v~~~g~~sG~~lNPArs~g~av~~~~~~~~wvy~vgp~lGa~la~~~~~~l~~~~~~~~   62 (75)
                      ++..+++||++|||||+|||+++.+.|+++|+||+||++|+++++++|++++.|+.+|.
T Consensus       188 ~~~~g~~TG~a~NPAR~~gPal~~~~~~~~wvywvgP~~Ga~l~a~~y~~l~~~~~~~~  246 (256)
T PLN00167        188 VLAAGPFSGGSMNPACAFGSAVVAGSFKNQAVYWVGPLLGGAVAGLLYDNVVFPTQDDR  246 (256)
T ss_pred             HHhccCCCCcccCcccchHHHHhccCccCcEEEeHHHHHHHHHHHHHHHHHhCCCcCCC
Confidence            45678899999999999999999989999999999999999999999999999988864

>PRK05420 aquaporin Z; Provisional

Probab=99.65  E-value=8.3e-17  Score=112.76  Aligned_cols=55  Identities=35%  Similarity=0.668  Sum_probs=49.3

Q ss_pred             EEecccCCCccChHhhHHHHhccccc--CceeeehhhhhHHHHHHHHHHHhhcCCCc
Q 035030            5 LIAGPSTGGSMNPVRTLGPAVAVNNY--KAIWIYLTAPILGALCGAGTYSAVKLPEE   59 (75)
Q Consensus         5 ~~~g~~sG~~lNPArs~g~av~~~~~--~~~wvy~vgp~lGa~la~~~~~~l~~~~~   59 (75)
                      ++++++||++|||||+|||+++.++|  +++|+||+||++|+++++++|++++..|+
T Consensus       175 ~~~~~~TG~s~NPAR~~gpal~~g~~~~~~~wvy~vgP~~Ga~laa~~y~~l~~~~~  231 (231)
T PRK05420        175 LISIPVTNTSVNPARSTGVALFVGGWALEQLWLFWVAPIVGAIIGGLIYRLLLEKDD  231 (231)
T ss_pred             HHhhccCCCccCcHHHHHHHHHhCCCCccceEEeehHHHHHHHHHHHHHHHHhccCC
Confidence            45678999999999999999998766  58999999999999999999999977654

>PLN00182 putative aquaporin NIP4; Provisional

Probab=99.63  E-value=6.7e-17  Score=116.56  Aligned_cols=59  Identities=37%  Similarity=0.927  Sum_probs=53.1

Q ss_pred             EEEecccCCCccChHhhHHHHhcccccCceeeehhhhhHHHHHHHHHHHhhcCCCcccc
Q 035030            4 ILIAGPSTGGSMNPVRTLGPAVAVNNYKAIWIYLTAPILGALCGAGTYSAVKLPEEDTD   62 (75)
Q Consensus         4 v~~~g~~sG~~lNPArs~g~av~~~~~~~~wvy~vgp~lGa~la~~~~~~l~~~~~~~~   62 (75)
                      +++.+++||++|||||+|+|+++.+.|+++|+||+||++|+++++++|++++.++++.+
T Consensus       202 ~~~~g~~SGa~lNPARt~gpal~~~~~~~~wvY~vap~lGA~lgally~~l~~~~~~~~  260 (283)
T PLN00182        202 VFVAGPISGASMNPARSLGPAIVMGRYKGIWVYIVGPFVGIIAGGFVYNLIRFTDKPLR  260 (283)
T ss_pred             HHHccccCccccChHHHHHHHHHhccccceeHHHHHHHHHHHHHHHHHHHHhccCCccc
Confidence            45678999999999999999999889999999999999999999999999986555543

>PLN00183 putative aquaporin NIP7; Provisional

Probab=99.61  E-value=1.8e-16  Score=113.83  Aligned_cols=59  Identities=47%  Similarity=0.950  Sum_probs=54.3

Q ss_pred             EEEecccCCCccChHhhHHHHhcccccCceeeehhhhhHHHHHHHHHHHhhcCCCcccc
Q 035030            4 ILIAGPSTGGSMNPVRTLGPAVAVNNYKAIWIYLTAPILGALCGAGTYSAVKLPEEDTD   62 (75)
Q Consensus         4 v~~~g~~sG~~lNPArs~g~av~~~~~~~~wvy~vgp~lGa~la~~~~~~l~~~~~~~~   62 (75)
                      +++.+++||++|||||+|+|++...+|+++|+||++|++|+++++++|++++.+....+
T Consensus       204 v~~~g~~TG~~~NPArtlgpai~~~~~~~~wvy~vapilGailaa~l~~~l~~~~~~~~  262 (274)
T PLN00183        204 VLITGPVSGGSMNPARSLGPAIVSWDFKDIWIYITAPTIGAVAGALMFHLLRLRTQPCS  262 (274)
T ss_pred             HHhccCCCCCEeCHHHHHHHHHhCCChhheehHHHHHHHHHHHHHHHHHHHhccCCCCC
Confidence            56788999999999999999999989999999999999999999999999998876654

>PTZ00016 aquaglyceroporin; Provisional

Probab=99.60  E-value=3e-16  Score=113.43  Aligned_cols=57  Identities=32%  Similarity=0.537  Sum_probs=49.7

Q ss_pred             EEEecccCCCccChHhhHHHHhcc----c--ccC----ceeeehhhhhHHHHHHHHHHHhhcCCCcc
Q 035030            4 ILIAGPSTGGSMNPVRTLGPAVAV----N--NYK----AIWIYLTAPILGALCGAGTYSAVKLPEED   60 (75)
Q Consensus         4 v~~~g~~sG~~lNPArs~g~av~~----~--~~~----~~wvy~vgp~lGa~la~~~~~~l~~~~~~   60 (75)
                      +++.+++||++|||||+|||+++.    +  .|+    ++|+||+||++|+++++++|++++.||-|
T Consensus       228 ~~~~g~~TG~smNPAR~fGPal~~~~~~g~~~~~~~~~~~WVy~vgP~vGa~~aally~~ll~~~~~  294 (294)
T PTZ00016        228 GISFGGNTGYALNPARDLGPRLFSAILWGSEVFTKDNYYFWVPLVAPFVGAVLGMFLYDKFIPPLIE  294 (294)
T ss_pred             HHhccCCCCCcccchhhHHHHHHHHHhccccccCcCCceeeeeehHHHHHHHHHHHHHHHHhCCCCC
Confidence            356788999999999999999986    2  454    68999999999999999999999988754

>cd00333 MIP Major intrinsic protein (MIP) superfamily

Probab=99.48  E-value=6.1e-15  Score=102.29  Aligned_cols=51  Identities=45%  Similarity=0.855  Sum_probs=46.3

Q ss_pred             EEEecccCCCccChHhhHHHHhcccc---cCceeeehhhhhHHHHHHHHHHHhh
Q 035030            4 ILIAGPSTGGSMNPVRTLGPAVAVNN---YKAIWIYLTAPILGALCGAGTYSAV   54 (75)
Q Consensus         4 v~~~g~~sG~~lNPArs~g~av~~~~---~~~~wvy~vgp~lGa~la~~~~~~l   54 (75)
                      ++.++.+||+++||||+|++++.++.   |+++|+||++|++|+++++++|+++
T Consensus       175 ~~~~g~~sG~~~NPAr~~g~~i~~~~~~~~~~~~vy~vap~lGai~aa~l~~~~  228 (228)
T cd00333         175 GLAGGPITGASMNPARSLGPALFTGLARHWHYFWVYWVGPLIGAIAGALVYDYV  228 (228)
T ss_pred             HHHhhcccccccCHhhchHHHHHhccccccceeehhhhHHHHHHHHHHHHHHhC
Confidence            35577899999999999999999875   9999999999999999999999864

Members of the MIP superfamily function as membrane channels that selectively transport water, small neutral molecules, and ions out of and between cells. The channel proteins share a common fold: the N-terminal cytosolic portion followed by six transmembrane helices, which might have arisen through gene duplication. On the basis of sequence similarity and functional characteristics, the superfamily can be subdivided into two major groups: water-selective channels called aquaporins (AQPs) and glycerol uptake facilitators (GlpFs). AQPs are found in all three kingdoms of life, while GlpFs have been characterized only within microorganisms.

>PF00230 MIP: Major intrinsic protein; InterPro: IPR000425 A number of transmembrane (TM) channel proteins can be grouped together on the basis of sequence similarities [, , , , ]

Probab=99.44  E-value=1.9e-14  Score=98.94  Aligned_cols=46  Identities=41%  Similarity=0.834  Sum_probs=42.2

Q ss_pred             EecccCCCccChHhhHHHHhcccccCceeeehhhhhHHHHHHHHHH
Q 035030            6 IAGPSTGGSMNPVRTLGPAVAVNNYKAIWIYLTAPILGALCGAGTY   51 (75)
Q Consensus         6 ~~g~~sG~~lNPArs~g~av~~~~~~~~wvy~vgp~lGa~la~~~~   51 (75)
                      ..+..||++|||||+|+|+++.+.|+++|+||++|++|+++++++|
T Consensus       182 ~~~~~tG~~~NPAr~~g~~l~~~~~~~~wvy~~~P~~Ga~~a~~~Y  227 (227)
T PF00230_consen  182 AGGPYTGASLNPARALGPALFSGIWDYFWVYWVGPFIGAILAALLY  227 (227)
T ss_dssp             HHHHHHST-SSHHHHHHHHHHHTHHTTTTHHHHHHHHHHHHHHHHH
T ss_pred             ccccccccccCchhhcCceeecccCCeEEEEEehHHHHHHHHHhhC
Confidence            4567899999999999999999999999999999999999999987

These include: Mammalian major intrinsic protein (MIP). MIP is the major component of lens fibre gap junctions. Mammalian aquaporins []. These proteins form water- specific channels that provide the plasma membranes of red cells and kidney prox imal and collecting tubules with high permeability to water, thereby permitting water to move in the direction of an osmotic gradient. Soybean nodulin-26, a major component of the peribacteroid membrane induced during nodulation in legume roots after Rhizobium infection. Plants tonoplast intrinsic proteins (TIP). There are various isoforms of TIP : alpha (seed), gamma, Rt (root), and Wsi (water-stress induced). These proteins may allow the diffusion of water, amino acids and/or peptides from the tonoplas t interior to the cytoplasm. Bacterial glycerol facilitator protein (gene glpF), which facilitates the mo vement of glycerol across the cytoplasmic membrane. Salmonella typhimurium propanediol diffusion fac ilitator (gene pduF). Yeast FPS1, a glycerol uptake/efflux facilitator protein. Drosophila neurogenic protein 'big brain' (bib). This protein may mediate in tercellular communication; it may functions by allowing the transport of certain molecules(s) and thereby sending a signal for an exodermal cell to become an ep idermoblast instead of a neuroblast. Yeast hypothetical protein YFL054c. A hypothetical protein from the pepX region of Lactococcus lactis. The structures of various members of the MIP family have been determined by means of X-ray diffraction [, , ], revealing the fold to comprise a right-handed bundle of 6 transmembrane (TM) alpha-helices [, , ]. Similarities in the N-and C-terminal halves of the molecule suggest that the proteins may have arisen through tandem, intragenic duplication of an ancestral protein that contained 3 TM domains []. Some of the proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins []. Aquaporin-CHIP (Aquaporin 1) belongs to the Colton blood group system and is associated with Co(a/b) antigen.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3NE2_A 2C32_A 1YMG_A 2B6P_A 3C02_A 2B5F_D 3CN6_A 3CN5_A 1Z98_M 3CLL_A ....

>TIGR00861 MIP MIP family channel proteins

Probab=99.42  E-value=2.2e-14  Score=98.87  Aligned_cols=48  Identities=46%  Similarity=0.871  Sum_probs=43.9

Q ss_pred             EEEecccCCCccChHhhHHHHhccc--ccCceeeehhhhhHHHHHHHHHH
Q 035030            4 ILIAGPSTGGSMNPVRTLGPAVAVN--NYKAIWIYLTAPILGALCGAGTY   51 (75)
Q Consensus         4 v~~~g~~sG~~lNPArs~g~av~~~--~~~~~wvy~vgp~lGa~la~~~~   51 (75)
                      ++..+.+||+++||||+|+++++.+  +|+++|+||++|++|+++++.+|
T Consensus       167 ~~~~g~~sG~~~NPAr~l~~~l~~~~~~~~~~~vy~vap~~Ga~~a~~~y  216 (216)
T TIGR00861       167 HLSMGPYTGTGMNPARSLGPALFAGLAGWGNHWVYWVGPIIGAILGALVY  216 (216)
T ss_pred             HHhCCCCcccccCchhhhhHHHHhccccccceeHHHHHHHHHHHHHHHhC
Confidence            4567889999999999999999987  89999999999999999998865

processes. Some members of the family, including the yeast FPS protein (TC #1.A.8.5.1) and tobacco NtTIPA may transport both water and small solutes.

>PLN00184 aquaporin NIP1; Provisional

Probab=99.37  E-value=4.6e-14  Score=102.40  Aligned_cols=55  Identities=22%  Similarity=0.240  Sum_probs=50.3

Q ss_pred             EEEEecccCCCccChHhhHHHHhccc-ccCceeeehhhhhHHHHHHHHHHHhhcCC
Q 035030            3 NILIAGPSTGGSMNPVRTLGPAVAVN-NYKAIWIYLTAPILGALCGAGTYSAVKLP   57 (75)
Q Consensus         3 ~v~~~g~~sG~~lNPArs~g~av~~~-~~~~~wvy~vgp~lGa~la~~~~~~l~~~   57 (75)
                      .+++.+++||+|+|||++|++++.++ +|...|+||++|++|+++|+++++.++..
T Consensus       101 ~i~~~g~iSGaH~NPAVTla~al~g~~~~~~~~~YiiaQllGA~lga~~~~~l~~~  156 (296)
T PLN00184        101 LIYSLGHISGAHINPAVTIAFASCGRFPLKQVPAYVISQVIGSTLAAATLRLLFGL  156 (296)
T ss_pred             HHHHhcCCCccccCHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            45678899999999999999999887 89999999999999999999999998854

>PLN00026 aquaporin NIP; Provisional

Probab=99.36  E-value=5.7e-14  Score=102.11  Aligned_cols=57  Identities=25%  Similarity=0.357  Sum_probs=51.3

Q ss_pred             EEEEecccCCCccChHhhHHHHhccc-ccCceeeehhhhhHHHHHHHHHHHhhcCCCc
Q 035030            3 NILIAGPSTGGSMNPVRTLGPAVAVN-NYKAIWIYLTAPILGALCGAGTYSAVKLPEE   59 (75)
Q Consensus         3 ~v~~~g~~sG~~lNPArs~g~av~~~-~~~~~wvy~vgp~lGa~la~~~~~~l~~~~~   59 (75)
                      .+++.+++||+|||||+++++++.++ +|..+|+||++|++|+++|+++++.++.+..
T Consensus       118 ~i~~~g~ISGaHlNPAVTla~al~g~~~~~~~~~YiiaQilGAi~aa~~~~~~~~~~~  175 (298)
T PLN00026        118 VILSTGHISGAHLNPSLTIAFAALRHFPWKHVPAYIAAQVSASICASFALKGVFHPFM  175 (298)
T ss_pred             HHHHhhccCccccCHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence            35668899999999999999999877 8999999999999999999999999987643

>COG0580 GlpF Glycerol uptake facilitator and related permeases (Major Intrinsic Protein Family) [Carbohydrate transport and metabolism]

Probab=99.31  E-value=9.1e-13  Score=93.62  Aligned_cols=53  Identities=40%  Similarity=0.665  Sum_probs=45.4

Q ss_pred             EEEecccCCCccChHhhHHHHhccc---------ccCceeeehhhhhHHHHHHHHHHHhhcC
Q 035030            4 ILIAGPSTGGSMNPVRTLGPAVAVN---------NYKAIWIYLTAPILGALCGAGTYSAVKL   56 (75)
Q Consensus         4 v~~~g~~sG~~lNPArs~g~av~~~---------~~~~~wvy~vgp~lGa~la~~~~~~l~~   56 (75)
                      +++.++.||..+|||||+||++...         +.+|+|+||++|++|+++++++|+.++.
T Consensus       179 ~~s~g~~TG~aiNPARdlGprl~~~~~g~~~~~g~~~y~wipvigpiiGa~lg~~~~~~~~~  240 (241)
T COG0580         179 GLSLGPTTGTAINPARDLGPRLAHSLAGWAANKGDSSYFWIPVIGPIVGAILGALLYKLLLG  240 (241)
T ss_pred             HHHhcCCCCCccChHHHHHHHHHHHhcCcccCCCCCCeEeeeehHHHHHHHHHHHHHHHHcc
Confidence            3567889999999999999999542         2258999999999999999999998764

>PLN00166 aquaporin TIP2; Provisional

Probab=99.28  E-value=4e-13  Score=95.32  Aligned_cols=55  Identities=29%  Similarity=0.372  Sum_probs=49.1

Q ss_pred             EEEEecccCCCccChHhhHHHHhccc-ccCceeeehhhhhHHHHHHHHHHHhhcCC
Q 035030            3 NILIAGPSTGGSMNPVRTLGPAVAVN-NYKAIWIYLTAPILGALCGAGTYSAVKLP   57 (75)
Q Consensus         3 ~v~~~g~~sG~~lNPArs~g~av~~~-~~~~~wvy~vgp~lGa~la~~~~~~l~~~   57 (75)
                      ++++++++||+|+||||++++++.++ +|...|+||++|++|+++++.+++.++..
T Consensus        70 ~i~~~g~iSGah~NPAvt~~~~l~g~~~~~~~~~y~~aq~lGa~~~a~~~~~~~~~  125 (250)
T PLN00166         70 GVSIAANISGGHLNPAVTLGLAIGGNITIITGFFYWIAQCLGSIVACLLLVFVTNG  125 (250)
T ss_pred             HHHHHhcccccccCHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence            45677899999999999999999865 68889999999999999999999988754

>PRK05420 aquaporin Z; Provisional

Probab=99.22  E-value=1.4e-12  Score=91.48  Aligned_cols=55  Identities=20%  Similarity=0.335  Sum_probs=48.4

Q ss_pred             EEEecccCCCccChHhhHHHHhccc-ccCceeeehhhhhHHHHHHHHHHHhhcCCC
Q 035030            4 ILIAGPSTGGSMNPVRTLGPAVAVN-NYKAIWIYLTAPILGALCGAGTYSAVKLPE   58 (75)
Q Consensus         4 v~~~g~~sG~~lNPArs~g~av~~~-~~~~~wvy~vgp~lGa~la~~~~~~l~~~~   58 (75)
                      +++.+++||+|+|||+++++.+.++ +|...|+||++|++|+++|+.+.+.++.++
T Consensus        51 i~~~g~iSG~h~NPAvtl~~~~~~~i~~~~~~~Y~~aQ~lGa~~ga~l~~~~~~~~  106 (231)
T PRK05420         51 AYAVGHISGGHFNPAVSVGLWAGGRFPAKELVPYIIAQVVGGIAAAAVLYLIASGK  106 (231)
T ss_pred             HHHHhCcccccCCHHHHHHHHHhCCCCHHHhHHHHHHHHHHHHHHHHHHHHHhCCc
Confidence            4567899999999999999999976 899999999999999999997777776543

>PLN00183 putative aquaporin NIP7; Provisional

Probab=99.21  E-value=1.2e-12  Score=94.11  Aligned_cols=55  Identities=20%  Similarity=0.247  Sum_probs=49.8

Q ss_pred             EEEEecccCCCccChHhhHHHHhccc-ccCceeeehhhhhHHHHHHHHHHHhhcCC
Q 035030            3 NILIAGPSTGGSMNPVRTLGPAVAVN-NYKAIWIYLTAPILGALCGAGTYSAVKLP   57 (75)
Q Consensus         3 ~v~~~g~~sG~~lNPArs~g~av~~~-~~~~~wvy~vgp~lGa~la~~~~~~l~~~   57 (75)
                      .+++.+++||+|+|||++|++++.++ .|...|+||++|++|+++|+.+++.++..
T Consensus        92 ~i~~~g~vSGah~NPAvTla~~l~g~i~~~~~~~Yi~aQ~lGa~~ga~l~~~~~~~  147 (274)
T PLN00183         92 VVFSIGSISGAHVNPSVTIAFATFGHFPWSKVPLYITAQTVGSVLATYVGVSVYGV  147 (274)
T ss_pred             HHHHhhccCccccCHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            34667889999999999999999987 78999999999999999999999888765

>PLN00182 putative aquaporin NIP4; Provisional

Probab=99.21  E-value=1.5e-12  Score=93.99  Aligned_cols=55  Identities=22%  Similarity=0.254  Sum_probs=49.7

Q ss_pred             EEEEecccCCCccChHhhHHHHhccc-ccCceeeehhhhhHHHHHHHHHHHhhcCC
Q 035030            3 NILIAGPSTGGSMNPVRTLGPAVAVN-NYKAIWIYLTAPILGALCGAGTYSAVKLP   57 (75)
Q Consensus         3 ~v~~~g~~sG~~lNPArs~g~av~~~-~~~~~wvy~vgp~lGa~la~~~~~~l~~~   57 (75)
                      .+++.+++||+|+|||+++++++.++ +|...|+||++|++|+++|+++++.++..
T Consensus        89 ~i~~~g~iSGah~NPAVTla~~~~~~~~~~~~~~Yi~aQ~lGa~~ga~~~~~~~~~  144 (283)
T PLN00182         89 MIYSTGHISGAHFNPAVTVTFAIFRRFPWYQVPLYIGAQLTGSLLASLTLRLMFNV  144 (283)
T ss_pred             HHHHhcCCCccccCHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            34567899999999999999999988 89999999999999999999999888843

>PLN00167 aquaporin TIP5; Provisional

Probab=99.20  E-value=2.4e-12  Score=91.65  Aligned_cols=55  Identities=22%  Similarity=0.340  Sum_probs=49.2

Q ss_pred             EEEEecccCCCccChHhhHHHHhccc-ccCceeeehhhhhHHHHHHHHHHHhhcCC
Q 035030            3 NILIAGPSTGGSMNPVRTLGPAVAVN-NYKAIWIYLTAPILGALCGAGTYSAVKLP   57 (75)
Q Consensus         3 ~v~~~g~~sG~~lNPArs~g~av~~~-~~~~~wvy~vgp~lGa~la~~~~~~l~~~   57 (75)
                      .+++.+++||+|+|||+++++.+.++ .|...|+||++|++|+++++.+++.++..
T Consensus        74 ~i~~~g~iSGah~NPAvtl~~~~~g~~~~~~~~~yi~aQ~lGa~~ga~~~~~~~~~  129 (256)
T PLN00167         74 AVYIAANISGGHVNPAVTFGMAVGGHISVPTAMFYWISQMLASVMACLFLKVTTVG  129 (256)
T ss_pred             HHHHhhcccccccCHHHHHHHHHhCCCcHhhhhHHHHHHHHHHHHHHHHHHHhhcc
Confidence            45678899999999999999999876 78899999999999999999998887643

>TIGR00861 MIP MIP family channel proteins

Probab=99.17  E-value=2.8e-12  Score=88.37  Aligned_cols=55  Identities=22%  Similarity=0.381  Sum_probs=49.6

Q ss_pred             EEEecccCCCccChHhhHHHHhccc-ccCceeeehhhhhHHHHHHHHHHHhhcCCC
Q 035030            4 ILIAGPSTGGSMNPVRTLGPAVAVN-NYKAIWIYLTAPILGALCGAGTYSAVKLPE   58 (75)
Q Consensus         4 v~~~g~~sG~~lNPArs~g~av~~~-~~~~~wvy~vgp~lGa~la~~~~~~l~~~~   58 (75)
                      +++.+++||+|+|||+++++.+.++ +|...|+||++|++|+++++.+++.++.++
T Consensus        49 ~~~~~~~sg~h~NPavt~~~~l~~~~~~~~~~~y~~aQ~~Ga~~~~~~~~~~~~~~  104 (216)
T TIGR00861        49 VYCVGGISGAHLNPAVTIALLLGRRFPLKRVPVYIVAQLIGAILGAALLYGLTSGL  104 (216)
T ss_pred             HHHHhcccccccCHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHcccc
Confidence            3456778999999999999999987 899999999999999999999999888765

processes. Some members of the family, including the yeast FPS protein (TC #1.A.8.5.1) and tobacco NtTIPA may transport both water and small solutes.

>PLN00027 aquaporin TIP; Provisional

Probab=99.16  E-value=3.3e-12  Score=90.53  Aligned_cols=55  Identities=20%  Similarity=0.283  Sum_probs=47.9

Q ss_pred             EEEEecccCCCccChHhhHHHHhccc-ccCceeeehhhhhHHHHHHHHHHHhhcCC
Q 035030            3 NILIAGPSTGGSMNPVRTLGPAVAVN-NYKAIWIYLTAPILGALCGAGTYSAVKLP   57 (75)
Q Consensus         3 ~v~~~g~~sG~~lNPArs~g~av~~~-~~~~~wvy~vgp~lGa~la~~~~~~l~~~   57 (75)
                      .+++.+++||+|+|||+++++.+.++ +|...|+||++|++|+++++.+++++...
T Consensus        72 ~i~~~~~iSGah~NPAvtl~~~~~g~~~~~~~~~yi~aQ~lGa~~ga~~~~~~~~~  127 (252)
T PLN00027         72 AVSVGANISGGHVNPAVTFGAFIGGNITLLRGILYWIAQLLGSVVACLLLKFSTGG  127 (252)
T ss_pred             HHHHHcccCccccChHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence            34567889999999999999998766 68889999999999999999999887643

>PTZ00016 aquaglyceroporin; Provisional

Probab=99.15  E-value=2.9e-12  Score=92.74  Aligned_cols=54  Identities=33%  Similarity=0.506  Sum_probs=49.0

Q ss_pred             EEEecccCCCccChHhhHHHHhccc-ccCceeeehhhhhHHHHHHHHHHHhhcCC
Q 035030            4 ILIAGPSTGGSMNPVRTLGPAVAVN-NYKAIWIYLTAPILGALCGAGTYSAVKLP   57 (75)
Q Consensus         4 v~~~g~~sG~~lNPArs~g~av~~~-~~~~~wvy~vgp~lGa~la~~~~~~l~~~   57 (75)
                      +++.+++||+|+|||+++++++.++ +|...|.||++|++|+++|+.+.+.++.+
T Consensus        98 i~~~g~iSG~h~NPAVTla~~l~g~i~~~~~~~YiiaQ~lGa~~ga~ll~~~~~~  152 (294)
T PTZ00016         98 LLVSAGISGGHLNPAVTLGNAVFGKFPWKKLPGYFVAQLLGAFVGAACVYGLYYG  152 (294)
T ss_pred             HHHhcccCcCccCHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence            4567889999999999999999988 89999999999999999999988887755

>COG0580 GlpF Glycerol uptake facilitator and related permeases (Major Intrinsic Protein Family) [Carbohydrate transport and metabolism]

Probab=99.15  E-value=6.1e-12  Score=89.42  Aligned_cols=59  Identities=25%  Similarity=0.376  Sum_probs=53.1

Q ss_pred             eEEEEecccCCCccChHhhHHHHhccc-ccCceeeehhhhhHHHHHHHHHHHhhcCCCcc
Q 035030            2 LNILIAGPSTGGSMNPVRTLGPAVAVN-NYKAIWIYLTAPILGALCGAGTYSAVKLPEED   60 (75)
Q Consensus         2 ~~v~~~g~~sG~~lNPArs~g~av~~~-~~~~~wvy~vgp~lGa~la~~~~~~l~~~~~~   60 (75)
                      +.+++.+.+||+|+|||++++.++.++ +|+....||++|++|+++|+.+...++.++..
T Consensus        54 ~~iy~~g~iSGaHlNPAVTi~la~~g~fp~~~v~~YivAQ~lGA~~ga~l~~~~~~~~~~  113 (241)
T COG0580          54 VAIYAFGGISGAHLNPAVTIALAVRGRFPWRKVLPYIVAQVLGAFAGAALLYLLYYGKIL  113 (241)
T ss_pred             HHHHhccCcCccccChHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhH
Confidence            457889999999999999999999988 89999999999999999999888888777544

>KOG0224 consensus Aquaporin (major intrinsic protein family) [Carbohydrate transport and metabolism]

Probab=99.13  E-value=1.5e-11  Score=89.84  Aligned_cols=57  Identities=26%  Similarity=0.445  Sum_probs=48.0

Q ss_pred             EEecccCCCccChHhhHHHHhccc----cc-------CceeeehhhhhHHHHHHHHHHHhhcCCCccc
Q 035030            5 LIAGPSTGGSMNPVRTLGPAVAVN----NY-------KAIWIYLTAPILGALCGAGTYSAVKLPEEDT   61 (75)
Q Consensus         5 ~~~g~~sG~~lNPArs~g~av~~~----~~-------~~~wvy~vgp~lGa~la~~~~~~l~~~~~~~   61 (75)
                      +..+..+|..|||||||||+++..    ++       .++|+.|++|++|+++++++|.+...-+.+.
T Consensus       213 ~s~G~N~GyaiNPARDlgPRlF~~~aGyG~~vF~~~~~~~WvPivgPl~Gai~G~~iY~~~Ig~h~~~  280 (316)
T KOG0224|consen  213 MSLGYNTGYAINPARDLGPRLFTSIAGYGPEVFSAGHNWWWVPIVGPLIGAILGGWIYDFFIGFHIPR  280 (316)
T ss_pred             HHhhcccCcccCcccccchHHHHHHHhcchhhcccCCceeeeeehhhhhhhhhhhhhheeeeeccCCC
Confidence            356788999999999999999941    11       4789999999999999999999998766663

>cd00333 MIP Major intrinsic protein (MIP) superfamily

Probab=99.12  E-value=3.9e-12  Score=88.24  Aligned_cols=55  Identities=29%  Similarity=0.408  Sum_probs=49.5

Q ss_pred             EEEecccCCCccChHhhHHHHhccc-ccCceeeehhhhhHHHHHHHHHHHhhcCCC
Q 035030            4 ILIAGPSTGGSMNPVRTLGPAVAVN-NYKAIWIYLTAPILGALCGAGTYSAVKLPE   58 (75)
Q Consensus         4 v~~~g~~sG~~lNPArs~g~av~~~-~~~~~wvy~vgp~lGa~la~~~~~~l~~~~   58 (75)
                      +++.+++||+|+|||+++++.+.++ +|...|+||++|++|+++++.+++.++.++
T Consensus        49 ~~~~~~~sga~~NPa~t~~~~~~~~~~~~~~~~y~~aq~~Ga~~~~~~~~~~~~~~  104 (228)
T cd00333          49 VYAVGHISGGHINPAVTLALAVGGRFPLIRVIPYIIAQLLGAILGAALLYGLYYGL  104 (228)
T ss_pred             HHHhccCCCCeEcHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence            4567889999999999999999987 789999999999999999999988887664

Members of the MIP superfamily function as membrane channels that selectively transport water, small neutral molecules, and ions out of and between cells. The channel proteins share a common fold: the N-terminal cytosolic portion followed by six transmembrane helices, which might have arisen through gene duplication. On the basis of sequence similarity and functional characteristics, the superfamily can be subdivided into two major groups: water-selective channels called aquaporins (AQPs) and glycerol uptake facilitators (GlpFs). AQPs are found in all three kingdoms of life, while GlpFs have been characterized only within microorganisms.

>KOG0224 consensus Aquaporin (major intrinsic protein family) [Carbohydrate transport and metabolism]

Probab=99.06  E-value=2.2e-11  Score=89.06  Aligned_cols=57  Identities=28%  Similarity=0.511  Sum_probs=50.7

Q ss_pred             CeEEEEecccCCCccChHhhHHHHhccc-ccCceeeehhhhhHHHHHHHHHHHhhcCC
Q 035030            1 MLNILIAGPSTGGSMNPVRTLGPAVAVN-NYKAIWIYLTAPILGALCGAGTYSAVKLP   57 (75)
Q Consensus         1 ~~~v~~~g~~sG~~lNPArs~g~av~~~-~~~~~wvy~vgp~lGa~la~~~~~~l~~~   57 (75)
                      |+++++++.+||+|+|||+||+..++++ .|..+.+|.++|++||++|+.....+|.+
T Consensus        78 ~~gVyvag~iSGgHlNPAVS~a~~~~g~~p~~k~p~Y~~aQ~iGAF~gaa~~y~~y~d  135 (316)
T KOG0224|consen   78 MMGVYVAGRISGGHLNPAVSLAMCILGRLPWKKFPVYVLAQFIGAFLGAATVYGLYYD  135 (316)
T ss_pred             HHHHHhhccccccccCHHHHHHHHHhcCCChhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3567889999999999999999999998 89999999999999999998877666543

>KOG0223 consensus Aquaporin (major intrinsic protein family) [Carbohydrate transport and metabolism]

Probab=98.91  E-value=3.4e-10  Score=80.35  Aligned_cols=56  Identities=29%  Similarity=0.379  Sum_probs=51.2

Q ss_pred             EEEEecccCCCccChHhhHHHHhccc-ccCceeeehhhhhHHHHHHHHHHHhhcCCC
Q 035030            3 NILIAGPSTGGSMNPVRTLGPAVAVN-NYKAIWIYLTAPILGALCGAGTYSAVKLPE   58 (75)
Q Consensus         3 ~v~~~g~~sG~~lNPArs~g~av~~~-~~~~~wvy~vgp~lGa~la~~~~~~l~~~~   58 (75)
                      .+++.+++||+|+|||++++..+.++ .+.....||++|++|+++|+.+.+.+..++
T Consensus        58 ~i~~~g~iSGaH~NPAVT~a~~~~~~isl~~~~~Y~vaQ~lGa~~g~~~l~~~~~~~  114 (238)
T KOG0223|consen   58 LVYSTGHISGAHFNPAVTLAFAVGGKISLFRAVAYIVAQLLGAIAGAALLKVVTPGQ  114 (238)
T ss_pred             HHhhhccccccccCHHHHHHHHHhCCCcHHHhHHHHHHHHHHHHHHHHHHheecCcc
Confidence            46678899999999999999999988 677899999999999999999999998885

>PF00230 MIP: Major intrinsic protein; InterPro: IPR000425 A number of transmembrane (TM) channel proteins can be grouped together on the basis of sequence similarities [, , , , ]

Probab=98.80  E-value=1.8e-10  Score=79.15  Aligned_cols=54  Identities=31%  Similarity=0.423  Sum_probs=47.4

Q ss_pred             EEecccCCCccChHhhHHHHhccc-ccCceeeehhhhhHHHHHHHHHHHhhcCCC
Q 035030            5 LIAGPSTGGSMNPVRTLGPAVAVN-NYKAIWIYLTAPILGALCGAGTYSAVKLPE   58 (75)
Q Consensus         5 ~~~g~~sG~~lNPArs~g~av~~~-~~~~~wvy~vgp~lGa~la~~~~~~l~~~~   58 (75)
                      +..+++||+|+|||.+++..+.++ +|.....|+++|++|+++|+.+.+.++.+.
T Consensus        63 ~~~~~iSGaH~NPaVTla~~l~g~~~~~~~~~Yi~aQ~lGa~~g~~l~~~~~~~~  117 (227)
T PF00230_consen   63 YAFGPISGAHFNPAVTLAFALTGRISWKKAIVYIIAQFLGAFLGALLVYALYPDS  117 (227)
T ss_dssp             HHHHHHHTSS-SHHHHHHHHHTTSSSHHHHHHHHHHHHHHHHHHHHHHHHHSTHH
T ss_pred             hhhhhccccccccchhhheeeeeeecccceeeEEeeccccccccccchhhcccCc
Confidence            445678999999999999999987 788999999999999999999988888773

These include: Mammalian major intrinsic protein (MIP). MIP is the major component of lens fibre gap junctions. Mammalian aquaporins []. These proteins form water- specific channels that provide the plasma membranes of red cells and kidney prox imal and collecting tubules with high permeability to water, thereby permitting water to move in the direction of an osmotic gradient. Soybean nodulin-26, a major component of the peribacteroid membrane induced during nodulation in legume roots after Rhizobium infection. Plants tonoplast intrinsic proteins (TIP). There are various isoforms of TIP : alpha (seed), gamma, Rt (root), and Wsi (water-stress induced). These proteins may allow the diffusion of water, amino acids and/or peptides from the tonoplas t interior to the cytoplasm. Bacterial glycerol facilitator protein (gene glpF), which facilitates the mo vement of glycerol across the cytoplasmic membrane. Salmonella typhimurium propanediol diffusion fac ilitator (gene pduF). Yeast FPS1, a glycerol uptake/efflux facilitator protein. Drosophila neurogenic protein 'big brain' (bib). This protein may mediate in tercellular communication; it may functions by allowing the transport of certain molecules(s) and thereby sending a signal for an exodermal cell to become an ep idermoblast instead of a neuroblast. Yeast hypothetical protein YFL054c. A hypothetical protein from the pepX region of Lactococcus lactis. The structures of various members of the MIP family have been determined by means of X-ray diffraction [, , ], revealing the fold to comprise a right-handed bundle of 6 transmembrane (TM) alpha-helices [, , ]. Similarities in the N-and C-terminal halves of the molecule suggest that the proteins may have arisen through tandem, intragenic duplication of an ancestral protein that contained 3 TM domains []. Some of the proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins []. Aquaporin-CHIP (Aquaporin 1) belongs to the Colton blood group system and is associated with Co(a/b) antigen.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3NE2_A 2C32_A 1YMG_A 2B6P_A 3C02_A 2B5F_D 3CN6_A 3CN5_A 1Z98_M 3CLL_A ....

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	75
3gd8_A	223	Crystal Structure Of Human Aquaporin 4 At 1.8 And I		1e-07
2zz9_A	301	Structure Of Aquaporin-4 S180d Mutant At 2.8 A Reso		1e-07
2d57_A	301	Double Layered 2d Crystal Structure Of Aquaporin-4		2e-07
3iyz_A	340	Structure Of Aquaporin-4 S180d Mutant At 10.0 A Res		2e-07
3d9s_A	266	Human Aquaporin 5 (Aqp5) - High Resolution X-Ray St		2e-05
2b6o_A	263	Electron Crystallographic Structure Of Lens Aquapor		5e-05
1ymg_A	263	The Channel Architecture Of Aquaporin O At 2.2 Angs		6e-05
1sor_A	235	Aquaporin-0 Membrane Junctions Reveal The Structure		6e-05
3m9i_A	220	Electron Crystallographic Structure Of Lens Aquapor		7e-05
2w1p_A	279	1.4 Angstrom Crystal Structure Of P.Pastoris Aquapo		9e-05
1j4n_A	271	Crystal Structure Of The Aqp1 Water Channel Length		9e-04

>pdb|3GD8|A Chain A, Crystal Structure Of Human Aquaporin 4 At 1.8 And Its Mechanism Of Conductance Length = 223

Iteration: 1
 Score = 51.6 bits (122), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 23/47 (48%), Positives = 29/47 (61%)
Query: 11  TGGSMNPVRTLGPAVAVNNYKAIWIYLTAPILGALCGAGTYSAVKLP 57
           TG SMNP R+ GPAV + N++  WIY   PI+GA+   G Y  V  P
Sbjct: 177 TGASMNPARSFGPAVIMGNWENHWIYWVGPIIGAVLAGGLYEYVFCP 223

>pdb|2ZZ9|A Chain A, Structure Of Aquaporin-4 S180d Mutant At 2.8 A Resolution By Electron Crystallography Length = 301

Iteration: 1
 Score = 51.2 bits (121), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 24/54 (44%), Positives = 31/54 (57%)
Query: 5   LIAGPSTGGSMNPVRTLGPAVAVNNYKAIWIYLTAPILGALCGAGTYSAVKLPE 58
           L A   TG SMNP R+ GPAV + N++  WIY   PI+GA+     Y  V  P+
Sbjct: 180 LFAINYTGASMNPARSFGPAVIMGNWENHWIYWVGPIIGAVLAGALYEYVFCPD 233

>pdb|2D57|A Chain A, Double Layered 2d Crystal Structure Of Aquaporin-4 (Aqp4m23) At 3.2 A Resolution By Electron Crystallography Length = 301

Iteration: 1
 Score = 51.2 bits (121), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 24/54 (44%), Positives = 31/54 (57%)
Query: 5   LIAGPSTGGSMNPVRTLGPAVAVNNYKAIWIYLTAPILGALCGAGTYSAVKLPE 58
           L A   TG SMNP R+ GPAV + N++  WIY   PI+GA+     Y  V  P+
Sbjct: 180 LFAINYTGASMNPARSFGPAVIMGNWENHWIYWVGPIIGAVLAGALYEYVFCPD 233

>pdb|3IYZ|A Chain A, Structure Of Aquaporin-4 S180d Mutant At 10.0 A Resolution From Electron Micrograph Length = 340

Iteration: 1
 Score = 50.8 bits (120), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 24/54 (44%), Positives = 31/54 (57%)
Query: 5   LIAGPSTGGSMNPVRTLGPAVAVNNYKAIWIYLTAPILGALCGAGTYSAVKLPE 58
           L A   TG SMNP R+ GPAV + N++  WIY   PI+GA+     Y  V  P+
Sbjct: 219 LFAINYTGASMNPARSFGPAVIMGNWENHWIYWVGPIIGAVLAGALYEYVFCPD 272

>pdb|3D9S|A Chain A, Human Aquaporin 5 (Aqp5) - High Resolution X-Ray Structure Length = 266

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 21/48 (43%), Positives = 29/48 (60%), Gaps = 1/48 (2%)
Query: 11  TGGSMNPVRTLGPAVAVNNYK-AIWIYLTAPILGALCGAGTYSAVKLP 57
           TG SMNP R+ GPAV +N +  A W++   PI+GA+  A  Y  +  P
Sbjct: 181 TGCSMNPARSFGPAVVMNRFSPAHWVFWVGPIVGAVLAAILYFYLLFP 228

>pdb|2B6O|A Chain A, Electron Crystallographic Structure Of Lens Aquaporin-0 (Aqp0) (Lens Mip) At 1.9a Resolution, In A Closed Pore State Length = 263

Iteration: 1
 Score = 42.7 bits (99), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 17/48 (35%), Positives = 25/48 (52%)
Query: 11  TGGSMNPVRTLGPAVAVNNYKAIWIYLTAPILGALCGAGTYSAVKLPE 58
           TG  MNP R+  PA+   N+   W+Y   P++GA  G+  Y  +  P 
Sbjct: 179 TGAGMNPARSFAPAILTRNFTNHWVYWVGPVIGAGLGSLLYDFLLFPR 226

>pdb|1YMG|A Chain A, The Channel Architecture Of Aquaporin O At 2.2 Angstrom Resolution Length = 263

Iteration: 1
 Score = 42.7 bits (99), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 17/48 (35%), Positives = 25/48 (52%)
Query: 11  TGGSMNPVRTLGPAVAVNNYKAIWIYLTAPILGALCGAGTYSAVKLPE 58
           TG  MNP R+  PA+   N+   W+Y   P++GA  G+  Y  +  P 
Sbjct: 179 TGAGMNPARSFAPAILTRNFTNHWVYWVGPVIGAGLGSLLYDFLLFPR 226

>pdb|1SOR|A Chain A, Aquaporin-0 Membrane Junctions Reveal The Structure Of A Closed Water Pore Length = 235

Iteration: 1
 Score = 42.4 bits (98), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 17/51 (33%), Positives = 26/51 (50%)
Query: 11  TGGSMNPVRTLGPAVAVNNYKAIWIYLTAPILGALCGAGTYSAVKLPEEDT 61
           TG  MNP R+  PA+   N+   W+Y   P++GA  G+  Y  +  P   +
Sbjct: 175 TGAGMNPARSFAPAILTRNFTNHWVYWVGPVIGAGLGSLLYDFLLFPRLKS 225

>pdb|3M9I|A Chain A, Electron Crystallographic Structure Of Lens Aquaporin-0 (Aqp Mip) In E. Coli Polar Lipids Length = 220

Iteration: 1
 Score = 42.4 bits (98), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 17/48 (35%), Positives = 25/48 (52%)
Query: 11  TGGSMNPVRTLGPAVAVNNYKAIWIYLTAPILGALCGAGTYSAVKLPE 58
           TG  MNP R+  PA+   N+   W+Y   P++GA  G+  Y  +  P 
Sbjct: 173 TGAGMNPARSFAPAILTRNFTNHWVYWVGPVIGAGLGSLLYDFLLFPR 220

>pdb|2W1P|A Chain A, 1.4 Angstrom Crystal Structure Of P.Pastoris Aquaporin, Aqy1, In A Closed Conformation At Ph 8.0 Length = 279

Iteration: 1
 Score = 42.0 bits (97), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 23/61 (37%), Positives = 30/61 (49%), Gaps = 8/61 (13%)
Query: 11  TGGSMNPVRTLGPAVAVNNY-KAIWIYLTAPILGALCGAGTYSAVKL-------PEEDTD 62
           TG  +NP R+ GPAVA  ++    WIY   PILGA      +   K        P +D+D
Sbjct: 219 TGAGLNPARSFGPAVAARSFPNYHWIYWLGPILGAFLAYSIWQMWKWLNYQTTNPGQDSD 278
Query: 63  A 63
           A
Sbjct: 279 A 279

>pdb|1J4N|A Chain A, Crystal Structure Of The Aqp1 Water Channel Length = 271

Iteration: 1
 Score = 38.5 bits (88), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 18/58 (31%), Positives = 28/58 (48%)
Query: 2   LNILIAGPSTGGSMNPVRTLGPAVAVNNYKAIWIYLTAPILGALCGAGTYSAVKLPEE 59
           L  L+A   TG  +NP R+ G +V  +N++  WI+   P +GA      Y  +  P  
Sbjct: 180 LGHLLAIDYTGCGINPARSFGSSVITHNFQDHWIFWVGPFIGAALAVLIYDFILAPRS 237

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	75
2zz9_A	301	Aquaporin-4; water transport, water channel, two-d	6e-19
3iyz_A	340	Aquaporin-4; water transport, water channel, two-d	7e-19
2b6o_A	263	Aquaporin-0, lens fiber major intrinsic protein; a	9e-19
3gd8_A	223	Aquaporin-4; proton exclusion, structural genomics	1e-17
2o9g_A	234	Aquaporin Z; integral membrane protein, structural	3e-17
3llq_A	256	Aquaporin Z 2; aquaporin tetramer, membrane protei	9e-17
1j4n_A	271	Aquaporin 1; membrane protein, channel protein, tr	2e-16
2w2e_A	279	AQY1, aquaporin, aquaporin PIP2-7 7; yeast, gating	4e-16
3d9s_A	266	Aquaporin-5, AQP-5; aquaglyceroporin, membrane pro	3e-15
2f2b_A	246	Aquaporin AQPM; protein, integral membrane protein	2e-14
3cn5_A	304	Aquaporin; membrane protein, transmembrane, transp	4e-14
3c02_A	258	Aquaglyceroporin; membrane protein, glycerol, wate	9e-12
1ldf_A	281	Glycerol uptake facilitator protein; glycerol-cond	3e-09

>2zz9_A Aquaporin-4; water transport, water channel, two-dimensional crystal, electron diffraction, electron microscopy, membrane protein; HET: PEE; 2.80A {Rattus norvegicus} PDB: 2d57_A Length = 301

 Score = 76.7 bits (189), Expect = 6e-19
 Identities = 26/71 (36%), Positives = 37/71 (52%)

Query: 2   LNILIAGPSTGGSMNPVRTLGPAVAVNNYKAIWIYLTAPILGALCGAGTYSAVKLPEEDT 61
           +  L A   TG SMNP R+ GPAV + N++  WIY   PI+GA+     Y  V  P+ + 
Sbjct: 177 IGHLFAINYTGASMNPARSFGPAVIMGNWENHWIYWVGPIIGAVLAGALYEYVFCPDVEL 236

Query: 62  DALAKPATASS 72
               K A + +
Sbjct: 237 KRRLKEAFSKA 247

>3iyz_A Aquaporin-4; water transport, water channel, two-dimensional C membrane protein, baculovirus expression system, glycoprote membrane; 10.00A {Rattus norvegicus} Length = 340

 Score = 77.2 bits (190), Expect = 7e-19
 Identities = 26/71 (36%), Positives = 37/71 (52%)

Query: 2   LNILIAGPSTGGSMNPVRTLGPAVAVNNYKAIWIYLTAPILGALCGAGTYSAVKLPEEDT 61
           +  L A   TG SMNP R+ GPAV + N++  WIY   PI+GA+     Y  V  P+ + 
Sbjct: 216 IGHLFAINYTGASMNPARSFGPAVIMGNWENHWIYWVGPIIGAVLAGALYEYVFCPDVEL 275

Query: 62  DALAKPATASS 72
               K A + +
Sbjct: 276 KRRLKEAFSKA 286

>2b6o_A Aquaporin-0, lens fiber major intrinsic protein; aquaporin-0 junctions, AQP0, lens MIP, lipid-protein interac membrane, lipid bilayer; HET: MC3; 1.90A {Ovis aries} SCOP: f.19.1.1 PDB: 1ymg_A* 2b6p_A 2c32_A 1sor_A 3m9i_A* Length = 263

 Score = 75.8 bits (187), Expect = 9e-19
 Identities = 19/60 (31%), Positives = 28/60 (46%)

Query: 2   LNILIAGPSTGGSMNPVRTLGPAVAVNNYKAIWIYLTAPILGALCGAGTYSAVKLPEEDT 61
           L  L     TG  MNP R+  PA+   N+   W+Y   P++GA  G+  Y  +  P   +
Sbjct: 170 LGHLFGMYYTGAGMNPARSFAPAILTRNFTNHWVYWVGPVIGAGLGSLLYDFLLFPRLKS 229

>3gd8_A Aquaporin-4; proton exclusion, structural genomics protein structure initiative, center for structures of MEMB proteins, CSMP, glycoprotein; HET: BOG; 1.80A {Homo sapiens} Length = 223

 Score = 72.2 bits (178), Expect = 1e-17
 Identities = 25/56 (44%), Positives = 32/56 (57%)

Query: 2   LNILIAGPSTGGSMNPVRTLGPAVAVNNYKAIWIYLTAPILGALCGAGTYSAVKLP 57
           +  L A   TG SMNP R+ GPAV + N++  WIY   PI+GA+   G Y  V  P
Sbjct: 168 IGHLFAINYTGASMNPARSFGPAVIMGNWENHWIYWVGPIIGAVLAGGLYEYVFCP 223

>2o9g_A Aquaporin Z; integral membrane protein, structural genomics, P protein structure initiative, center for structures of MEMB proteins, CSMP; HET: BOG; 1.90A {Escherichia coli} PDB: 2o9f_A* 2o9d_A* 2o9e_A 1rc2_B* 2abm_A* 3nk5_A* 3nka_A* 3nkc_A* Length = 234

 Score = 71.1 bits (175), Expect = 3e-17
 Identities = 16/61 (26%), Positives = 28/61 (45%), Gaps = 2/61 (3%)

Query: 1   MLNILIAGPSTGGSMNPVRTLGPAVAVNNY--KAIWIYLTAPILGALCGAGTYSAVKLPE 58
            L  LI+ P T  S+NP R+   A+    +  + +W +   PI+G + G   Y  +    
Sbjct: 174 TLIHLISIPVTNTSVNPARSTAVAIFQGGWALEQLWFFWVVPIVGGIIGGLIYRTLLEKR 233

Query: 59  E 59
           +
Sbjct: 234 D 234

>3llq_A Aquaporin Z 2; aquaporin tetramer, membrane protein, water channel, structu genomics, PSI-2, protein structure initiative; 2.01A {Agrobacterium tumefaciens str} Length = 256

 Score = 70.4 bits (173), Expect = 9e-17
 Identities = 19/60 (31%), Positives = 31/60 (51%), Gaps = 2/60 (3%)

Query: 1   MLNILIAGPSTGGSMNPVRTLGPAVAVNNY--KAIWIYLTAPILGALCGAGTYSAVKLPE 58
            L  LI+ P T  S+NP R+ G A+ V  +  + +W++  API+G   GA  +      +
Sbjct: 197 TLIHLISIPVTNTSVNPARSTGQALFVGGWALQQLWLFWLAPIVGGAAGAVIWKLFGEKD 256

>1j4n_A Aquaporin 1; membrane protein, channel protein, transmembrane helices; HET: BNG; 2.20A {Bos taurus} SCOP: f.19.1.1 PDB: 1h6i_A 1fqy_A 1ih5_A Length = 271

 Score = 69.3 bits (170), Expect = 2e-16
 Identities = 18/62 (29%), Positives = 28/62 (45%)

Query: 2   LNILIAGPSTGGSMNPVRTLGPAVAVNNYKAIWIYLTAPILGALCGAGTYSAVKLPEEDT 61
           L  L+A   TG  +NP R+ G +V  +N++  WI+   P +GA      Y  +  P    
Sbjct: 180 LGHLLAIDYTGCGINPARSFGSSVITHNFQDHWIFWVGPFIGAALAVLIYDFILAPRSSD 239

Query: 62  DA 63
             
Sbjct: 240 LT 241

>2w2e_A AQY1, aquaporin, aquaporin PIP2-7 7; yeast, gating, membrane protein; HET: BOG; 1.15A {Komagataella pastoris} PDB: 2w1p_A* Length = 279

 Score = 69.0 bits (169), Expect = 4e-16
 Identities = 22/61 (36%), Positives = 28/61 (45%), Gaps = 1/61 (1%)

Query: 2   LNILIAGPSTGGSMNPVRTLGPAVAVNNYKAI-WIYLTAPILGALCGAGTYSAVKLPEED 60
           +  LI    TG  +NP R+ GPAVA  ++    WIY   PILGA      +   K     
Sbjct: 210 IAHLICIYYTGAGLNPARSFGPAVAARSFPNYHWIYWLGPILGAFLAYSIWQMWKWLNYQ 269

Query: 61  T 61
           T
Sbjct: 270 T 270

>3d9s_A Aquaporin-5, AQP-5; aquaglyceroporin, membrane protein, water transport, X-RAY diffraction, lipid, phosphatidylserine, PSF, NPA, AR/R, water channel; HET: PS6; 2.00A {Homo sapiens} Length = 266

 Score = 66.2 bits (162), Expect = 3e-15
 Identities = 22/61 (36%), Positives = 32/61 (52%), Gaps = 1/61 (1%)

Query: 2   LNILIAGPSTGGSMNPVRTLGPAVAVNNYKAI-WIYLTAPILGALCGAGTYSAVKLPEED 60
           L  L+    TG SMNP R+ GPAV +N +    W++   PI+GA+  A  Y  +  P   
Sbjct: 172 LGHLVGIYFTGCSMNPARSFGPAVVMNRFSPAHWVFWVGPIVGAVLAAILYFYLLFPNSL 231

Query: 61  T 61
           +
Sbjct: 232 S 232

>2f2b_A Aquaporin AQPM; protein, integral membrane protein, channel, structural GENO PSI-2, protein structure initiative; 1.68A {Methanothermobacter marburgensis str} PDB: 2evu_A 3ne2_A* Length = 246

 Score = 64.3 bits (157), Expect = 2e-14
 Identities = 19/60 (31%), Positives = 27/60 (45%), Gaps = 6/60 (10%)

Query: 1   MLNILIAGPSTGGSMNPVRTLGPAVAVNNYKA------IWIYLTAPILGALCGAGTYSAV 54
              I   G  +G S+NP RT GP +    +          IY+  PI+GA+  A TY  +
Sbjct: 184 AGIITTLGNISGSSLNPARTFGPYLNDMIFAGTDLWNYYSIYVIGPIVGAVLAALTYQYL 243

>3cn5_A Aquaporin; membrane protein, transmembrane, transport, transport protein; 2.05A {Spinacia oleracea} PDB: 3cn6_A 3cll_A 1z98_A 2b5f_A Length = 304

 Score = 63.6 bits (155), Expect = 4e-14
 Identities = 19/56 (33%), Positives = 26/56 (46%), Gaps = 3/56 (5%)

Query: 2   LNILIAGPSTGGSMNPVRTLGPAVAVNNYKAI---WIYLTAPILGALCGAGTYSAV 54
           +  L   P TG  +NP R+ G AV  N+ K     WI+   P +GA   A  +  V
Sbjct: 231 MVHLATIPITGTGINPARSFGAAVIFNSNKVWDDQWIFWVGPFIGAAVAAAYHQYV 286

>3c02_A Aquaglyceroporin; membrane protein, glycerol, water, transport, structural GEN PSI-2, protein structure initiative; HET: BOG; 2.05A {Plasmodium falciparum} Length = 258

 Score = 56.8 bits (138), Expect = 9e-12
 Identities = 18/79 (22%), Positives = 28/79 (35%), Gaps = 10/79 (12%)

Query: 1   MLNILIAGPSTGGSMNPVRTLGPAVA----------VNNYKAIWIYLTAPILGALCGAGT 50
           +   +  G +TG ++NP R LG                +    W+ L AP +G++     
Sbjct: 178 LCIGITFGGNTGFALNPSRDLGSRFLSLIAYGKDTFTKDNFYFWVPLVAPCVGSVVFCQF 237

Query: 51  YSAVKLPEEDTDALAKPAT 69
           Y  V  P  D     K   
Sbjct: 238 YDKVICPLVDLANNEKDGV 256

>1ldf_A Glycerol uptake facilitator protein; glycerol-conducting membrane channel protein, transport PROT; HET: BOG; 2.10A {Escherichia coli} SCOP: f.19.1.1 PDB: 1fx8_A* 1lda_A* 1ldi_A* Length = 281

 Score = 49.9 bits (120), Expect = 3e-09
 Identities = 24/88 (27%), Positives = 32/88 (36%), Gaps = 16/88 (18%)

Query: 1   MLNILIAGPSTGGSMNPVRTLGPAVAV-------------NNYKAIWIYLTAPILGALCG 47
            +     GP TG +MNP R  GP V                +     + L  PI+GA+ G
Sbjct: 188 AVIGASMGPLTGTAMNPARDFGPKVFAWLAGWGNVAFTGGRDIPYFLVPLFGPIVGAIVG 247

Query: 48  AGTYSAV---KLPEEDTDALAKPATASS 72
           A  Y  +    LP +      K  T  S
Sbjct: 248 AFAYRKLIGRHLPCDICVVEEKETTTPS 275

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	75
2b6o_A	263	Aquaporin-0, lens fiber major intrinsic protein; a	99.72
3iyz_A	340	Aquaporin-4; water transport, water channel, two-d	99.7
3gd8_A	223	Aquaporin-4; proton exclusion, structural genomics	99.68
3d9s_A	266	Aquaporin-5, AQP-5; aquaglyceroporin, membrane pro	99.67
2zz9_A	301	Aquaporin-4; water transport, water channel, two-d	99.65
1j4n_A	271	Aquaporin 1; membrane protein, channel protein, tr	99.65
3cn5_A	304	Aquaporin; membrane protein, transmembrane, transp	99.64
2o9g_A	234	Aquaporin Z; integral membrane protein, structural	99.63
3llq_A	256	Aquaporin Z 2; aquaporin tetramer, membrane protei	99.58
2w2e_A	279	AQY1, aquaporin, aquaporin PIP2-7 7; yeast, gating	99.58
1ldf_A	281	Glycerol uptake facilitator protein; glycerol-cond	99.53
3c02_A	258	Aquaglyceroporin; membrane protein, glycerol, wate	99.53
2f2b_A	246	Aquaporin AQPM; protein, integral membrane protein	99.49
2b6o_A	263	Aquaporin-0, lens fiber major intrinsic protein; a	99.29
2zz9_A	301	Aquaporin-4; water transport, water channel, two-d	99.14
3iyz_A	340	Aquaporin-4; water transport, water channel, two-d	99.14
3llq_A	256	Aquaporin Z 2; aquaporin tetramer, membrane protei	99.13
2f2b_A	246	Aquaporin AQPM; protein, integral membrane protein	99.13
2o9g_A	234	Aquaporin Z; integral membrane protein, structural	99.12
3d9s_A	266	Aquaporin-5, AQP-5; aquaglyceroporin, membrane pro	99.1
2w2e_A	279	AQY1, aquaporin, aquaporin PIP2-7 7; yeast, gating	99.1
1j4n_A	271	Aquaporin 1; membrane protein, channel protein, tr	99.09
3c02_A	258	Aquaglyceroporin; membrane protein, glycerol, wate	99.08
1ldf_A	281	Glycerol uptake facilitator protein; glycerol-cond	99.05
3cn5_A	304	Aquaporin; membrane protein, transmembrane, transp	99.04
3gd8_A	223	Aquaporin-4; proton exclusion, structural genomics	99.02

>2b6o_A Aquaporin-0, lens fiber major intrinsic protein; aquaporin-0 junctions, AQP0, lens MIP, lipid-protein interac membrane, lipid bilayer; HET: MC3; 1.90A {Ovis aries} SCOP: f.19.1.1 PDB: 1ymg_A* 2b6p_A 2c32_A 1sor_A 3m9i_A*

Probab=99.72  E-value=9.6e-19  Score=123.44  Aligned_cols=56  Identities=32%  Similarity=0.638  Sum_probs=52.0

Q ss_pred             EEecccCCCccChHhhHHHHhcccccCceeeehhhhhHHHHHHHHHHHhhcCCCcc
Q 035030            5 LIAGPSTGGSMNPVRTLGPAVAVNNYKAIWIYLTAPILGALCGAGTYSAVKLPEED   60 (75)
Q Consensus         5 ~~~g~~sG~~lNPArs~g~av~~~~~~~~wvy~vgp~lGa~la~~~~~~l~~~~~~   60 (75)
                      ++++++||++|||||||||+++.++|+++|+||+||++|+++++++|++++.|+.+
T Consensus       173 ~~~g~~TG~a~NPAR~~GPal~~~~~~~~Wvy~vgP~~Ga~la~~~y~~l~~~~~~  228 (263)
T 2b6o_A          173 LFGMYYTGAGMNPARSFAPAILTRNFTNHWVYWVGPVIGAGLGSLLYDFLLFPRLK  228 (263)
T ss_dssp             HHHTTTSTTCCCHHHHHHHHHHHTCCTTCTHHHHHHHHHHHHHHHHHHTTTSCCSS
T ss_pred             HhccCCCcccccHHHHHHHHHHcCCccceeHHHHHHHHHHHHHHHHHHHHhCCccc
Confidence            45678999999999999999999999999999999999999999999999987654

>3iyz_A Aquaporin-4; water transport, water channel, two-dimensional C membrane protein, baculovirus expression system, glycoprote membrane; 10.00A {Rattus norvegicus}

Probab=99.70  E-value=2e-18  Score=126.14  Aligned_cols=56  Identities=43%  Similarity=0.767  Sum_probs=52.4

Q ss_pred             EEecccCCCccChHhhHHHHhcccccCceeeehhhhhHHHHHHHHHHHhhcCCCcc
Q 035030            5 LIAGPSTGGSMNPVRTLGPAVAVNNYKAIWIYLTAPILGALCGAGTYSAVKLPEED   60 (75)
Q Consensus         5 ~~~g~~sG~~lNPArs~g~av~~~~~~~~wvy~vgp~lGa~la~~~~~~l~~~~~~   60 (75)
                      +.++++||++|||||+|||+++.++|+++|+||+||++|+++|+++|++++.|+.+
T Consensus       219 ~~g~~~TG~amNPARdlGPal~~~~w~~~WVywvgPiiGailaallY~~l~~p~~~  274 (340)
T 3iyz_A          219 LFAINYTGASMNPARSFGPAVIMGNWENHWIYWVGPIIGAVLAGALYEYVFCPDVE  274 (340)
T ss_pred             HhccCCccccccHHHHHHHHHHccCCCcEeehhHHHHHHHHHHHHHHHHHhCCChh
Confidence            45568899999999999999999999999999999999999999999999998876

>3gd8_A Aquaporin-4; proton exclusion, structural genomics protein structure initiative, center for structures of MEMB proteins, CSMP, glycoprotein; HET: BOG; 1.80A {Homo sapiens}

Probab=99.68  E-value=6.8e-18  Score=116.65  Aligned_cols=52  Identities=46%  Similarity=0.817  Sum_probs=48.5

Q ss_pred             EecccCCCccChHhhHHHHhcccccCceeeehhhhhHHHHHHHHHHHhhcCC
Q 035030            6 IAGPSTGGSMNPVRTLGPAVAVNNYKAIWIYLTAPILGALCGAGTYSAVKLP   57 (75)
Q Consensus         6 ~~g~~sG~~lNPArs~g~av~~~~~~~~wvy~vgp~lGa~la~~~~~~l~~~   57 (75)
                      .++++||++|||||||||+++.++|+++|+||+||++|+++++++|++++.|
T Consensus       172 ~g~~~TG~a~NPAR~~GP~l~~~~w~~~Wvy~vgP~~Ga~la~~~y~~~~~p  223 (223)
T 3gd8_A          172 FAINYTGASMNPARSFGPAVIMGNWENHWIYWVGPIIGAVLAGGLYEYVFCP  223 (223)
T ss_dssp             HHHHHHCCCCCHHHHHHHHHHHTCCTTTTHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred             hccCCccccccHHHHHHHHHHhcCCCcEEeehhHHHHHHHHHHHHHHHHcCC
Confidence            3456899999999999999999999999999999999999999999999876

>3d9s_A Aquaporin-5, AQP-5; aquaglyceroporin, membrane protein, water transport, X-RAY diffraction, lipid, phosphatidylserine, PSF, NPA, AR/R, water channel; HET: PS6; 2.00A {Homo sapiens}

Probab=99.67  E-value=3.2e-18  Score=121.07  Aligned_cols=57  Identities=37%  Similarity=0.657  Sum_probs=51.9

Q ss_pred             EEecccCCCccChHhhHHHHhcccccCc-eeeehhhhhHHHHHHHHHHHhhcCCCccc
Q 035030            5 LIAGPSTGGSMNPVRTLGPAVAVNNYKA-IWIYLTAPILGALCGAGTYSAVKLPEEDT   61 (75)
Q Consensus         5 ~~~g~~sG~~lNPArs~g~av~~~~~~~-~wvy~vgp~lGa~la~~~~~~l~~~~~~~   61 (75)
                      +.++++||++|||||||||+++.++|++ +|+||+||++|+++|+++|++++.|+.+.
T Consensus       175 ~~~g~~TG~a~NPAR~~GPal~~~~~~~~~Wvy~vgP~~Ga~la~~~y~~l~~~~~~~  232 (266)
T 3d9s_A          175 LVGIYFTGCSMNPARSFGPAVVMNRFSPAHWVFWVGPIVGAVLAAILYFYLLFPNSLS  232 (266)
T ss_dssp             HHHHHHHSCCSCHHHHHHHHHHHTCCCTTHHHHHHHHHHHHHHHHHHHHHTTSCCSCC
T ss_pred             HHhhccccccccHHHHHHHHHHcCCcccCEeeeehHHHHHHHHHHHHHHHHhCCCchh
Confidence            3456789999999999999999999998 99999999999999999999999886654

>2zz9_A Aquaporin-4; water transport, water channel, two-dimensional crystal, electron diffraction, electron microscopy, membrane protein; HET: PEE; 2.80A {Rattus norvegicus} PDB: 2d57_A

Probab=99.65  E-value=4.5e-18  Score=122.40  Aligned_cols=56  Identities=41%  Similarity=0.736  Sum_probs=48.1

Q ss_pred             EecccCCCccChHhhHHHHhcccccCceeeehhhhhHHHHHHHHHHHhhcCCCccc
Q 035030            6 IAGPSTGGSMNPVRTLGPAVAVNNYKAIWIYLTAPILGALCGAGTYSAVKLPEEDT   61 (75)
Q Consensus         6 ~~g~~sG~~lNPArs~g~av~~~~~~~~wvy~vgp~lGa~la~~~~~~l~~~~~~~   61 (75)
                      .++++||++|||||+|||+++.++|+++|+||+||++|+++|+++|++++.|+.+.
T Consensus       181 ~g~~~TG~a~NPAR~~GPal~~~~w~~~WVy~vgPiiGailaa~ly~~l~~~~~~~  236 (301)
T 2zz9_A          181 FAINYTGASMNPARSFGPAVIMGNWENHWIYWVGPIIGAVLAGALYEYVFCPDVEL  236 (301)
T ss_dssp             HHHHHHCCCCCHHHHHHHHHHHCCCTTTTHHHHHHHHHHHHHHHHHHTTTC-----
T ss_pred             HhcCCcccccCcHHHHHHHHHhCCCcceeeeeeHHHHHHHHHHHHHHHHhCCchhh
Confidence            34567999999999999999999999999999999999999999999999876653

>1j4n_A Aquaporin 1; membrane protein, channel protein, transmembrane helices; HET: BNG; 2.20A {Bos taurus} SCOP: f.19.1.1 PDB: 1h6i_A 1fqy_A 1ih5_A

Probab=99.65  E-value=2.4e-17  Score=116.68  Aligned_cols=56  Identities=29%  Similarity=0.587  Sum_probs=51.2

Q ss_pred             EecccCCCccChHhhHHHHhcccccCceeeehhhhhHHHHHHHHHHHhhcCCCccc
Q 035030            6 IAGPSTGGSMNPVRTLGPAVAVNNYKAIWIYLTAPILGALCGAGTYSAVKLPEEDT   61 (75)
Q Consensus         6 ~~g~~sG~~lNPArs~g~av~~~~~~~~wvy~vgp~lGa~la~~~~~~l~~~~~~~   61 (75)
                      .++++||++|||||||||+++.++|+++|+||+||++|+++++++|++++.++.++
T Consensus       184 ~~~~~TG~a~NPAR~~Gpal~~~~~~~~wv~~vgP~~Ga~la~~~y~~~~~~~~~~  239 (271)
T 1j4n_A          184 LAIDYTGCGINPARSFGSSVITHNFQDHWIFWVGPFIGAALAVLIYDFILAPRSSD  239 (271)
T ss_dssp             HHHHHHCCCCCHHHHHHHHHHTTCCTTTTHHHHHHHHHHHHHHHHHHTTTSCCSSC
T ss_pred             hccCCCccccChHHHHHHHHHhCCCcceeHHHHHHHHHHHHHHHHHHHHhCCCCcc
Confidence            34578999999999999999999999999999999999999999999999887653

>3cn5_A Aquaporin; membrane protein, transmembrane, transport, transport protein; 2.05A {Spinacia oleracea} PDB: 3cn6_A 3cll_A 1z98_A 2b5f_A

Probab=99.64  E-value=1e-17  Score=120.67  Aligned_cols=54  Identities=31%  Similarity=0.528  Sum_probs=49.1

Q ss_pred             EEecccCCCccChHhhHHHHhc---ccccCceeeehhhhhHHHHHHHHHHHhhcCCC
Q 035030            5 LIAGPSTGGSMNPVRTLGPAVA---VNNYKAIWIYLTAPILGALCGAGTYSAVKLPE   58 (75)
Q Consensus         5 ~~~g~~sG~~lNPArs~g~av~---~~~~~~~wvy~vgp~lGa~la~~~~~~l~~~~   58 (75)
                      ++++++||++|||||+|||+++   .++|+++|+||+||++|+++|+++|++++.++
T Consensus       234 l~~g~~TG~amNPAR~~GPal~~~~~~~w~~~WvywvgPiiGa~laa~~y~~l~~~~  290 (304)
T 3cn5_A          234 LATIPITGTGINPARSFGAAVIFNSNKVWDDQWIFWVGPFIGAAVAAAYHQYVLRAA  290 (304)
T ss_dssp             HHHHHHHSCCCCHHHHHHHHHHHCCHHHHHHTTHHHHHHHHHHHHHHHHHHTTSCCC
T ss_pred             HhccCCCccccChHHHHHHHHHHccCCCcCceEEEeehHHHHHHHHHHHHHHHhCCC
Confidence            4567889999999999999999   55899999999999999999999999998764

>2o9g_A Aquaporin Z; integral membrane protein, structural genomics, P protein structure initiative, center for structures of MEMB proteins, CSMP; HET: BOG; 1.90A {Escherichia coli} PDB: 2o9f_A* 2o9d_A* 2o9e_A 1rc2_B* 2abm_A* 3nk5_A* 3nka_A* 3nkc_A*

Probab=99.63  E-value=2e-17  Score=114.90  Aligned_cols=54  Identities=28%  Similarity=0.538  Sum_probs=48.5

Q ss_pred             EEecccCCCccChHhhHHHHhcccc--cCceeeehhhhhHHHHHHHHHHHhhcCCC
Q 035030            5 LIAGPSTGGSMNPVRTLGPAVAVNN--YKAIWIYLTAPILGALCGAGTYSAVKLPE   58 (75)
Q Consensus         5 ~~~g~~sG~~lNPArs~g~av~~~~--~~~~wvy~vgp~lGa~la~~~~~~l~~~~   58 (75)
                      ++.+++||++|||||||||+++.++  |+++|+||+||++|+++++++|++++.++
T Consensus       178 ~~~g~~TG~s~NPAR~lGPal~~g~~~~~~~Wv~~vgP~~Ga~la~~~y~~~~~~~  233 (234)
T 2o9g_A          178 LISIPVTNTSVNPARSTAVAIFQGGWALEQLWFFWVVPIVGGIIGGLIYRTLLEKR  233 (234)
T ss_dssp             HHHHHHHSCCSCHHHHHHHHHHHCSHHHHSHHHHHHHHHHHHHHHHHHHHHHTSCC
T ss_pred             HHccCCCccccChHHHHHHHHHhCCCCCceeeeeehHHhHHHHHHHHHHHHHcCCC
Confidence            4567789999999999999999875  55999999999999999999999998764

>3llq_A Aquaporin Z 2; aquaporin tetramer, membrane protein, water channel, structu genomics, PSI-2, protein structure initiative; 2.01A {Agrobacterium tumefaciens str}

Probab=99.58  E-value=9.6e-17  Score=113.27  Aligned_cols=51  Identities=35%  Similarity=0.649  Sum_probs=45.9

Q ss_pred             EEecccCCCccChHhhHHHHhcccc--cCceeeehhhhhHHHHHHHHHHHhhc
Q 035030            5 LIAGPSTGGSMNPVRTLGPAVAVNN--YKAIWIYLTAPILGALCGAGTYSAVK   55 (75)
Q Consensus         5 ~~~g~~sG~~lNPArs~g~av~~~~--~~~~wvy~vgp~lGa~la~~~~~~l~   55 (75)
                      ++++++||++|||||+|||+++.++  |+++|+||+||++|+++|+++|+++.
T Consensus       201 ~~~g~~TG~a~NPAR~lGPal~~g~~~~~~~WVy~vgPi~Ga~la~~~y~~l~  253 (256)
T 3llq_A          201 LISIPVTNTSVNPARSTGQALFVGGWALQQLWLFWLAPIVGGAAGAVIWKLFG  253 (256)
T ss_dssp             HHHHHHHSCCSCHHHHHHHHHHHCHHHHHHTTHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHhccccccccChHHHHHHHHHcCCCcccceeeeeeHHHHHHHHHHHHHHHhc
Confidence            4456789999999999999999874  56899999999999999999999986

>2w2e_A AQY1, aquaporin, aquaporin PIP2-7 7; yeast, gating, membrane protein; HET: BOG; 1.15A {Komagataella pastoris} PDB: 2w1p_A*

Probab=99.58  E-value=1.6e-16  Score=113.11  Aligned_cols=56  Identities=38%  Similarity=0.624  Sum_probs=50.3

Q ss_pred             EEecccCCCccChHhhHHHHhccccc-CceeeehhhhhHHHHHHHHHHHhhcCCCcc
Q 035030            5 LIAGPSTGGSMNPVRTLGPAVAVNNY-KAIWIYLTAPILGALCGAGTYSAVKLPEED   60 (75)
Q Consensus         5 ~~~g~~sG~~lNPArs~g~av~~~~~-~~~wvy~vgp~lGa~la~~~~~~l~~~~~~   60 (75)
                      ++++++||++|||||||||+++.+.| +++|+||+||++|+++++++|++++..+.+
T Consensus       213 l~~g~~TG~s~NPAR~~GPal~~~~~~~~~WVy~vgPiiGa~la~~ly~~l~~~~~~  269 (279)
T 2w2e_A          213 LICIYYTGAGLNPARSFGPAVAARSFPNYHWIYWLGPILGAFLAYSIWQMWKWLNYQ  269 (279)
T ss_dssp             HHHHHHHCCCCSHHHHHHHHHHHTCCCTTTTHHHHHHHHHHHHHHHHHHHHHHTTTT
T ss_pred             HhcccccccccChHHHHHHHHHhccchhhhhHHHHHHHHHHHHHHHHHHHHHccCCC
Confidence            45678899999999999999999765 689999999999999999999999877766

>1ldf_A Glycerol uptake facilitator protein; glycerol-conducting membrane channel protein, transport PROT; HET: BOG; 2.10A {Escherichia coli} SCOP: f.19.1.1 PDB: 1fx8_A* 1lda_A* 1ldi_A*

Probab=99.53  E-value=3.9e-16  Score=110.80  Aligned_cols=56  Identities=34%  Similarity=0.506  Sum_probs=47.0

Q ss_pred             EEecccCCCccChHhhHHHHhccc-------ccC------ceeeehhhhhHHHHHHHHHHHhhcCCCcc
Q 035030            5 LIAGPSTGGSMNPVRTLGPAVAVN-------NYK------AIWIYLTAPILGALCGAGTYSAVKLPEED   60 (75)
Q Consensus         5 ~~~g~~sG~~lNPArs~g~av~~~-------~~~------~~wvy~vgp~lGa~la~~~~~~l~~~~~~   60 (75)
                      ++.+++||++|||||||||+++..       .|+      ++||||+||++|+++++++|++++.++.+
T Consensus       192 ~~~g~~TG~a~NPAR~~GPal~~~~~g~g~~~~~~~~~~~~~WVy~vgPi~Ga~la~~~y~~l~~~~~~  260 (281)
T 1ldf_A          192 ASMGPLTGTAMNPARDFGPKVFAWLAGWGNVAFTGGRDIPYFLVPLFGPIVGAIVGAFAYRKLIGRHLP  260 (281)
T ss_dssp             HHHHHHHCCCCCHHHHHHHHHHHHHTTTTTHHHHTTCSSCTTHHHHHHHHHHHHHHHHHHHHHTGGGC-
T ss_pred             HhcccccccccCcHhhHHHHHHHHhcccccccccccCCCceeeHHhHHHHHHHHHHHHHHHHHhCccCC
Confidence            456788999999999999999851       232      79999999999999999999999876554

>3c02_A Aquaglyceroporin; membrane protein, glycerol, water, transport, structural GEN PSI-2, protein structure initiative; HET: BOG; 2.05A {Plasmodium falciparum}

Probab=99.53  E-value=1.6e-16  Score=111.62  Aligned_cols=56  Identities=30%  Similarity=0.482  Sum_probs=48.4

Q ss_pred             EEecccCCCccChHhhHHHHhccc------cc----CceeeehhhhhHHHHHHHHHHHhhcCCCcc
Q 035030            5 LIAGPSTGGSMNPVRTLGPAVAVN------NY----KAIWIYLTAPILGALCGAGTYSAVKLPEED   60 (75)
Q Consensus         5 ~~~g~~sG~~lNPArs~g~av~~~------~~----~~~wvy~vgp~lGa~la~~~~~~l~~~~~~   60 (75)
                      ++.+++||++|||||||||+++.+      +|    +++|+||+||++|+++++++|++++.++.+
T Consensus       182 ~~~g~~TG~a~NPAR~~GPal~~~~~~g~~~~~~~~~y~Wv~~vgP~~Ga~la~~~y~~~~~~~~~  247 (258)
T 3c02_A          182 ITFGGNTGFALNPSRDLGSRFLSLIAYGKDTFTKDNFYFWVPLVAPCVGSVVFCQFYDKVICPLVD  247 (258)
T ss_dssp             HHHHHHHCCCCCHHHHHHHHHHHHHHHCTHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHTHHHHHH
T ss_pred             HhccCccCCCcChHHHHHHHHHHhccccccccccCCceeehHHHHHHHHHHHHHHHHHHHhcccCC
Confidence            456788999999999999999862      34    569999999999999999999999876554

>2f2b_A Aquaporin AQPM; protein, integral membrane protein, channel, structural GENO PSI-2, protein structure initiative; 1.68A {Methanothermobacter marburgensis str} PDB: 2evu_A 3ne2_A*

Probab=99.49  E-value=2.1e-15  Score=105.18  Aligned_cols=53  Identities=36%  Similarity=0.606  Sum_probs=45.9

Q ss_pred             EEEecccCCCccChHhhHHHHhc--c----cccCceeeehhhhhHHHHHHHHHHHhhcC
Q 035030            4 ILIAGPSTGGSMNPVRTLGPAVA--V----NNYKAIWIYLTAPILGALCGAGTYSAVKL   56 (75)
Q Consensus         4 v~~~g~~sG~~lNPArs~g~av~--~----~~~~~~wvy~vgp~lGa~la~~~~~~l~~   56 (75)
                      +++.+++||++|||||||||++.  .    ..|+++|+||++|++|+++++++|++++.
T Consensus       187 ~~~~g~~TG~~iNPAr~lgp~l~~~~~g~~~~w~~~~vy~vap~~Ga~laa~~y~~l~~  245 (246)
T 2f2b_A          187 ITTLGNISGSSLNPARTFGPYLNDMIFAGTDLWNYYSIYVIGPIVGAVLAALTYQYLTS  245 (246)
T ss_dssp             HHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCGGGTTHHHHHHHHHHHHHHHHHHHHTC
T ss_pred             HhcccccCCCccCHHHHHHHHHHHHHcCCCCCcceEEEeeeHHHHHHHHHHHHHHHHcC
Confidence            34567889999999999999992  2    26888899999999999999999999874

>2b6o_A Aquaporin-0, lens fiber major intrinsic protein; aquaporin-0 junctions, AQP0, lens MIP, lipid-protein interac membrane, lipid bilayer; HET: MC3; 1.90A {Ovis aries} SCOP: f.19.1.1 PDB: 1ymg_A* 2b6p_A 2c32_A 1sor_A 3m9i_A*

Probab=99.29  E-value=2.1e-13  Score=96.13  Aligned_cols=57  Identities=26%  Similarity=0.379  Sum_probs=51.3

Q ss_pred             EEEEecccCCCccChHhhHHHHhccc-ccCceeeehhhhhHHHHHHHHHHHhhcCCCc
Q 035030            3 NILIAGPSTGGSMNPVRTLGPAVAVN-NYKAIWIYLTAPILGALCGAGTYSAVKLPEE   59 (75)
Q Consensus         3 ~v~~~g~~sG~~lNPArs~g~av~~~-~~~~~wvy~vgp~lGa~la~~~~~~l~~~~~   59 (75)
                      .+++.+++||+|+|||++++.++.++ +|...|+||++|++|+++|+.+++.++.++.
T Consensus        55 ~i~~~g~iSGahlNPAVTla~~~~g~~~~~~~~~Yi~AQ~lGa~~ga~l~~~~~~~~~  112 (263)
T 2b6o_A           55 LVQAVGHISGAHVNPAVTFAFLVGSQMSLLRAICYVVAQLLGAVAGAAVLYSVTPPAV  112 (263)
T ss_dssp             HHHHGGGTTCCCCSHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHHHHHHHHSCTTT
T ss_pred             HHHHhhccCcCeeChHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHccccc
Confidence            34567899999999999999999987 8899999999999999999999999987653

>2zz9_A Aquaporin-4; water transport, water channel, two-dimensional crystal, electron diffraction, electron microscopy, membrane protein; HET: PEE; 2.80A {Rattus norvegicus} PDB: 2d57_A

Probab=99.14  E-value=3.9e-12  Score=91.45  Aligned_cols=57  Identities=30%  Similarity=0.422  Sum_probs=51.3

Q ss_pred             EEEEecccCCCccChHhhHHHHhccc-ccCceeeehhhhhHHHHHHHHHHHhhcCCCc
Q 035030            3 NILIAGPSTGGSMNPVRTLGPAVAVN-NYKAIWIYLTAPILGALCGAGTYSAVKLPEE   59 (75)
Q Consensus         3 ~v~~~g~~sG~~lNPArs~g~av~~~-~~~~~wvy~vgp~lGa~la~~~~~~l~~~~~   59 (75)
                      ++++.+++||+|+|||+|++..+.++ +|.....|+++|++|+++|+.+.+.++.++.
T Consensus        62 ~v~~~g~iSGaHlNPAVTla~~~~g~~~~~~~~~YiiAQ~lGAi~Ga~lv~~~~~~~~  119 (301)
T 2zz9_A           62 MVQCFGHISGGHINPAVTVAMVCTRKISIAKSVFYITAQCLGAIIGAGILYLVTPPSV  119 (301)
T ss_dssp             HHHHHGGGTCCCCSHHHHHHHHHTSSSCTTTTHHHHHHHHHHHHHHHHHHHTTSCSCG
T ss_pred             hhheeccCCcceeChHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence            34567889999999999999999988 8999999999999999999999999987654

>3iyz_A Aquaporin-4; water transport, water channel, two-dimensional C membrane protein, baculovirus expression system, glycoprote membrane; 10.00A {Rattus norvegicus}

Probab=99.14  E-value=1e-11  Score=90.74  Aligned_cols=58  Identities=29%  Similarity=0.407  Sum_probs=52.5

Q ss_pred             eEEEEecccCCCccChHhhHHHHhccc-ccCceeeehhhhhHHHHHHHHHHHhhcCCCc
Q 035030            2 LNILIAGPSTGGSMNPVRTLGPAVAVN-NYKAIWIYLTAPILGALCGAGTYSAVKLPEE   59 (75)
Q Consensus         2 ~~v~~~g~~sG~~lNPArs~g~av~~~-~~~~~wvy~vgp~lGa~la~~~~~~l~~~~~   59 (75)
                      +++++.+++||+|+|||+||+.++.++ +|.....||++|++|+++|+.+.+.++.++.
T Consensus       100 ~~v~~~g~ISGAHlNPAVTlal~l~G~~~~~~~~~YiiAQ~lGA~~GA~lv~~~~~~~~  158 (340)
T 3iyz_A          100 TMVQCFGHISGGHINPAVTVAMVCTRKISIAKSVFYITAQCLGAIIGAGILYLVTPPSV  158 (340)
T ss_pred             HheeEeeccCcCeeChHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcchhh
Confidence            568899999999999999999999987 7889999999999999999999888876543

>3llq_A Aquaporin Z 2; aquaporin tetramer, membrane protein, water channel, structu genomics, PSI-2, protein structure initiative; 2.01A {Agrobacterium tumefaciens str}

Probab=99.13  E-value=2.4e-12  Score=90.76  Aligned_cols=54  Identities=24%  Similarity=0.374  Sum_probs=49.0

Q ss_pred             EEEEecccCCCccChHhhHHHHhccc-ccCceeeehhhhhHHHHHHHHHHHhhcC
Q 035030            3 NILIAGPSTGGSMNPVRTLGPAVAVN-NYKAIWIYLTAPILGALCGAGTYSAVKL   56 (75)
Q Consensus         3 ~v~~~g~~sG~~lNPArs~g~av~~~-~~~~~wvy~vgp~lGa~la~~~~~~l~~   56 (75)
                      ++++.+++||+|+|||+|++.++.++ +|.....||++|++|+++|+.+.+.++.
T Consensus        78 ~i~~~g~iSGaHlNPAVTla~~~~g~~~~~~~~~YiiAQ~lGA~~ga~lv~~~~~  132 (256)
T 3llq_A           78 MAYAVGGISGGHFNPAVSVGLTVAGRFPASSLVPYVIAQVAGAIVAAAALYVIAT  132 (256)
T ss_dssp             HHHHHHHHHCCCCSHHHHHHHHHTTSSCGGGHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHheeeccccceEchHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence            45667889999999999999999987 8999999999999999999999888874

>2f2b_A Aquaporin AQPM; protein, integral membrane protein, channel, structural GENO PSI-2, protein structure initiative; 1.68A {Methanothermobacter marburgensis str} PDB: 2evu_A 3ne2_A*

Probab=99.13  E-value=4.4e-12  Score=88.29  Aligned_cols=55  Identities=24%  Similarity=0.292  Sum_probs=50.5

Q ss_pred             EEEEecccCCCccChHhhHHHHhccc-ccCceeeehhhhhHHHHHHHHHHHhhcCC
Q 035030            3 NILIAGPSTGGSMNPVRTLGPAVAVN-NYKAIWIYLTAPILGALCGAGTYSAVKLP   57 (75)
Q Consensus         3 ~v~~~g~~sG~~lNPArs~g~av~~~-~~~~~wvy~vgp~lGa~la~~~~~~l~~~   57 (75)
                      .+++.+++||+|+|||+|++..+.++ +|.....|+++|++|+++|+.+.+.++.+
T Consensus        69 ~v~~~g~iSGaH~NPAVTla~~~~g~~~~~~~~~Yi~AQ~lGa~~ga~l~~~~~~~  124 (246)
T 2f2b_A           69 SIYALGNISGCHINPAVTIGLWSVKKFPGREVVPYIIAQLLGAAFGSFIFLQCAGI  124 (246)
T ss_dssp             HHHHHTTTTCCCCSHHHHHHHHHTTSSCGGGHHHHHHHHHHHHHHHHHHHHHHHCT
T ss_pred             HhheecccccceeCHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHcCc
Confidence            34567899999999999999999988 89999999999999999999999999877

>2o9g_A Aquaporin Z; integral membrane protein, structural genomics, P protein structure initiative, center for structures of MEMB proteins, CSMP; HET: BOG; 1.90A {Escherichia coli} PDB: 2o9f_A* 2o9d_A* 2o9e_A 1rc2_B* 2abm_A* 3nk5_A* 3nka_A* 3nkc_A*

Probab=99.12  E-value=2.1e-12  Score=89.58  Aligned_cols=56  Identities=21%  Similarity=0.314  Sum_probs=50.0

Q ss_pred             EEEEecccCCCccChHhhHHHHhccc-ccCceeeehhhhhHHHHHHHHHHHhhcCCC
Q 035030            3 NILIAGPSTGGSMNPVRTLGPAVAVN-NYKAIWIYLTAPILGALCGAGTYSAVKLPE   58 (75)
Q Consensus         3 ~v~~~g~~sG~~lNPArs~g~av~~~-~~~~~wvy~vgp~lGa~la~~~~~~l~~~~   58 (75)
                      .+++.+++||+|+|||+|++..+.++ +|.....|+++|++|+++|+.+.+.++.++
T Consensus        53 ~i~~~g~iSGaHlNPAVTla~~~~g~~~~~~~~~Yi~aQ~lGa~~ga~l~~~~~~~~  109 (234)
T 2o9g_A           53 MAFAVGHISGGHFNPAVTIGLWAGGRFPAKEVVGYVIAQVVGGIVAAALLYLIASGK  109 (234)
T ss_dssp             HHHHHHHHHCCCCSHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred             HHHHhhccCcceeCHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCc
Confidence            34567889999999999999999988 899999999999999999999998888654

>3d9s_A Aquaporin-5, AQP-5; aquaglyceroporin, membrane protein, water transport, X-RAY diffraction, lipid, phosphatidylserine, PSF, NPA, AR/R, water channel; HET: PS6; 2.00A {Homo sapiens}

Probab=99.10  E-value=2.3e-12  Score=91.04  Aligned_cols=55  Identities=31%  Similarity=0.492  Sum_probs=49.5

Q ss_pred             EEEEecccCCCccChHhhHHHHhccc-ccCceeeehhhhhHHHHHHHHHHHhhcCC
Q 035030            3 NILIAGPSTGGSMNPVRTLGPAVAVN-NYKAIWIYLTAPILGALCGAGTYSAVKLP   57 (75)
Q Consensus         3 ~v~~~g~~sG~~lNPArs~g~av~~~-~~~~~wvy~vgp~lGa~la~~~~~~l~~~   57 (75)
                      ++++.+++||+|+|||+|++..+.++ +|...+.||++|++|+++|+.+.+.++.+
T Consensus        57 ~i~~~g~iSGaHlNPAVTla~~~~g~~~~~~~~~Yi~AQ~lGA~~ga~l~~~~~~~  112 (266)
T 3d9s_A           57 LAQALGPVSGGHINPAITLALLVGNQISLLRAFFYVAAQLVGAIAGAGILYGVAPL  112 (266)
T ss_dssp             HHHHHHHHHCCCCCHHHHHHHHHTSSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCH
T ss_pred             HHHHHcccCcceECHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHccc
Confidence            34567889999999999999999988 79999999999999999999999998854

>2w2e_A AQY1, aquaporin, aquaporin PIP2-7 7; yeast, gating, membrane protein; HET: BOG; 1.15A {Komagataella pastoris} PDB: 2w1p_A*

Probab=99.10  E-value=5.7e-12  Score=89.61  Aligned_cols=57  Identities=25%  Similarity=0.268  Sum_probs=50.8

Q ss_pred             EEEEecccCCCccChHhhHHHHhccc-ccCceeeehhhhhHHHHHHHHHHHhhcCCCc
Q 035030            3 NILIAGPSTGGSMNPVRTLGPAVAVN-NYKAIWIYLTAPILGALCGAGTYSAVKLPEE   59 (75)
Q Consensus         3 ~v~~~g~~sG~~lNPArs~g~av~~~-~~~~~wvy~vgp~lGa~la~~~~~~l~~~~~   59 (75)
                      ++++.+++||+|+|||+|++..+.++ +|.....|+++|++|+++|+.+.+.++.++.
T Consensus        99 ~v~~~g~iSGaHlNPAVTla~~~~g~~~~~~~~~YiiAQ~lGA~~ga~lv~~~~~~~~  156 (279)
T 2w2e_A           99 GVFITYRVSGGNLNPAVTLALVLARAIPPFRGILMAFTQIVAGMAAAGAASAMTPGEI  156 (279)
T ss_dssp             HHHHHTTTTCCCCSHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCSSC
T ss_pred             HHHHHhhcCccccChHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHccccc
Confidence            35667899999999999999999988 8999999999999999999999998886543

>1j4n_A Aquaporin 1; membrane protein, channel protein, transmembrane helices; HET: BNG; 2.20A {Bos taurus} SCOP: f.19.1.1 PDB: 1h6i_A 1fqy_A 1ih5_A

Probab=99.09  E-value=3.3e-12  Score=90.32  Aligned_cols=54  Identities=22%  Similarity=0.374  Sum_probs=48.8

Q ss_pred             EEEecccCCCccChHhhHHHHhccc-ccCceeeehhhhhHHHHHHHHHHHhhcCC
Q 035030            4 ILIAGPSTGGSMNPVRTLGPAVAVN-NYKAIWIYLTAPILGALCGAGTYSAVKLP   57 (75)
Q Consensus         4 v~~~g~~sG~~lNPArs~g~av~~~-~~~~~wvy~vgp~lGa~la~~~~~~l~~~   57 (75)
                      +++.+++||+|+|||+|++..+.++ +|.....||++|++|+++|+.+.+.++.+
T Consensus        66 i~~~g~iSGaHlNPAVTla~~~~g~~~~~~~~~Yi~AQ~lGa~~ga~l~~~~~~~  120 (271)
T 1j4n_A           66 AQSVGHISGAHLNPAVTLGLLLSCQISVLRAIMYIIAQCVGAIVATAILSGITSS  120 (271)
T ss_dssp             HHHHHHHHCCCCCHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred             HHHHhcCCcceEcHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHccC
Confidence            4567889999999999999999988 89999999999999999999999888754

>3c02_A Aquaglyceroporin; membrane protein, glycerol, water, transport, structural GEN PSI-2, protein structure initiative; HET: BOG; 2.05A {Plasmodium falciparum}

Probab=99.08  E-value=2.5e-12  Score=90.29  Aligned_cols=56  Identities=25%  Similarity=0.372  Sum_probs=50.1

Q ss_pred             EEEEecccCCCccChHhhHHHHhccc-ccCceeeehhhhhHHHHHHHHHHHhhcCCC
Q 035030            3 NILIAGPSTGGSMNPVRTLGPAVAVN-NYKAIWIYLTAPILGALCGAGTYSAVKLPE   58 (75)
Q Consensus         3 ~v~~~g~~sG~~lNPArs~g~av~~~-~~~~~wvy~vgp~lGa~la~~~~~~l~~~~   58 (75)
                      .+++.+++||+|+|||+|++..+.++ +|.....|+++|++|+++|+.+.+.++.++
T Consensus        57 ~i~~~g~iSGaHlNPAVTla~~~~g~~~~~~~~~Yi~AQ~lGa~~ga~l~~~~~~~~  113 (258)
T 3c02_A           57 GILVSAKLSGAHLNLAVSIGLSSINKFDLKKIPVYFFAQLLGAFVGTSTVYGLYHGF  113 (258)
T ss_dssp             HHHHHHHHHCCCCSHHHHHHHHHTTSSCGGGHHHHHHHHHHHHHHHHHHHHHHTHHH
T ss_pred             HHheecccCcCeeChHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHcchh
Confidence            34567889999999999999999988 899999999999999999999998888653

>1ldf_A Glycerol uptake facilitator protein; glycerol-conducting membrane channel protein, transport PROT; HET: BOG; 2.10A {Escherichia coli} SCOP: f.19.1.1 PDB: 1fx8_A* 1lda_A* 1ldi_A*

Probab=99.05  E-value=3.7e-12  Score=90.29  Aligned_cols=56  Identities=16%  Similarity=0.319  Sum_probs=50.0

Q ss_pred             EEEEecccCCCccChHhhHHHHhccc-ccCceeeehhhhhHHHHHHHHHHHhhcCCC
Q 035030            3 NILIAGPSTGGSMNPVRTLGPAVAVN-NYKAIWIYLTAPILGALCGAGTYSAVKLPE   58 (75)
Q Consensus         3 ~v~~~g~~sG~~lNPArs~g~av~~~-~~~~~wvy~vgp~lGa~la~~~~~~l~~~~   58 (75)
                      ++++.+++||+|+|||+|++..+.++ +|.....|+++|++|+++|+.+.+.++.++
T Consensus        55 ~i~~~g~iSGaHlNPAVTla~~~~g~~~~~~~~~Yi~AQ~lGA~~ga~l~~~~~~~~  111 (281)
T 1ldf_A           55 AIYLTAGVSGAHLNPAVTIALWLFACFDKRKVIPFIVSQVAGAFCAAALVYGLYYNL  111 (281)
T ss_dssp             HHHHHHHHHCCCCSHHHHHHHHHHSCCCTTTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HhheecccCcCeeChHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence            34567889999999999999999988 899999999999999999999988888654

>3cn5_A Aquaporin; membrane protein, transmembrane, transport, transport protein; 2.05A {Spinacia oleracea} PDB: 3cn6_A 3cll_A 1z98_A 2b5f_A

Probab=99.04  E-value=6.2e-12  Score=90.45  Aligned_cols=56  Identities=29%  Similarity=0.470  Sum_probs=50.6

Q ss_pred             EEEEecccCCCccChHhhHHHHhccc-ccCceeeehhhhhHHHHHHHHHHHhhcCCC
Q 035030            3 NILIAGPSTGGSMNPVRTLGPAVAVN-NYKAIWIYLTAPILGALCGAGTYSAVKLPE   58 (75)
Q Consensus         3 ~v~~~g~~sG~~lNPArs~g~av~~~-~~~~~wvy~vgp~lGa~la~~~~~~l~~~~   58 (75)
                      ++++.+.+||+|+|||+|++..+.++ +|.....|+++|++|+++|+.+.+.++.++
T Consensus       111 ~v~~~g~iSGaHlNPAVTla~~l~g~~~~~~~~~YiiAQ~lGAi~Ga~lv~~~~~~~  167 (304)
T 3cn5_A          111 LVYCTAGISGGHINPAVTFGLFLARKVELLRALVYMIAQCLGAICGVGLVKAFMKGP  167 (304)
T ss_dssp             HHHHHTTTTCCCCSHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHHHHHHCHHH
T ss_pred             eeeEeeccCCCccCcHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence            45667899999999999999999988 888999999999999999999999888654

>3gd8_A Aquaporin-4; proton exclusion, structural genomics protein structure initiative, center for structures of MEMB proteins, CSMP, glycoprotein; HET: BOG; 1.80A {Homo sapiens}

Probab=99.02  E-value=5e-12  Score=87.20  Aligned_cols=55  Identities=29%  Similarity=0.450  Sum_probs=48.9

Q ss_pred             EEEecccCCCccChHhhHHHHhccc-ccCceeeehhhhhHHHHHHHHHHHhhcCCC
Q 035030            4 ILIAGPSTGGSMNPVRTLGPAVAVN-NYKAIWIYLTAPILGALCGAGTYSAVKLPE   58 (75)
Q Consensus         4 v~~~g~~sG~~lNPArs~g~av~~~-~~~~~wvy~vgp~lGa~la~~~~~~l~~~~   58 (75)
                      +++.+++||+|+|||+|++..+.++ +|.....|+++|++|+++|+.+.+.++.++
T Consensus        54 v~~~g~iSGaHlNPAVTla~~~~g~~~~~~~~~Yi~AQ~lGA~~ga~lv~~~~~~~  109 (223)
T 3gd8_A           54 VQCFGHISGGHINPAVTVAMVCTRKISIAKSVFYIAAQCLGAIIGAGILYLVTPPS  109 (223)
T ss_dssp             HHHHHHHHCCCCSHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHH
T ss_pred             HheecccccceEcHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHhhcccc
Confidence            4567789999999999999999987 788999999999999999999988887543

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	75
d1ymga1	234	f.19.1.1 (A:6-239) Aquaporin-0 {Cow (Bos taurus) [	1e-11
d1j4na_	249	f.19.1.1 (A:) Aquaporin-1 {Cow (Bos taurus) [TaxId	3e-10
d1rc2a_	231	f.19.1.1 (A:) Aquaporin Z {Escherichia coli [TaxId	2e-08
d1fx8a_	254	f.19.1.1 (A:) Glycerol uptake facilitator protein	1e-07

>d1ymga1 f.19.1.1 (A:6-239) Aquaporin-0 {Cow (Bos taurus) [TaxId: 9913]} Length = 234

class: Membrane and cell surface proteins and peptides
fold: Aquaporin-like
superfamily: Aquaporin-like
family: Aquaporin-like
domain: Aquaporin-0
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 55.1 bits (132), Expect = 1e-11
 Identities = 19/63 (30%), Positives = 29/63 (46%)

Query: 1   MLNILIAGPSTGGSMNPVRTLGPAVAVNNYKAIWIYLTAPILGALCGAGTYSAVKLPEED 60
            L  L     TG  MNP R+  PA+   N+   W+Y   P++GA  G+  Y  +  P   
Sbjct: 164 TLGHLFGMYYTGAGMNPARSFAPAILTRNFTNHWVYWVGPVIGAGLGSLLYDFLLFPRLK 223

Query: 61  TDA 63
           + +
Sbjct: 224 SVS 226

>d1j4na_ f.19.1.1 (A:) Aquaporin-1 {Cow (Bos taurus) [TaxId: 9913]} Length = 249

class: Membrane and cell surface proteins and peptides
fold: Aquaporin-like
superfamily: Aquaporin-like
family: Aquaporin-like
domain: Aquaporin-1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 51.7 bits (123), Expect = 3e-10
 Identities = 18/61 (29%), Positives = 28/61 (45%)

Query: 1   MLNILIAGPSTGGSMNPVRTLGPAVAVNNYKAIWIYLTAPILGALCGAGTYSAVKLPEED 60
            L  L+A   TG  +NP R+ G +V  +N++  WI+   P +GA      Y  +  P   
Sbjct: 179 ALGHLLAIDYTGCGINPARSFGSSVITHNFQDHWIFWVGPFIGAALAVLIYDFILAPRSS 238

Query: 61  T 61
            
Sbjct: 239 D 239

>d1rc2a_ f.19.1.1 (A:) Aquaporin Z {Escherichia coli [TaxId: 562]} Length = 231

class: Membrane and cell surface proteins and peptides
fold: Aquaporin-like
superfamily: Aquaporin-like
family: Aquaporin-like
domain: Aquaporin Z
species: Escherichia coli [TaxId: 562]

 Score = 46.3 bits (109), Expect = 2e-08
 Identities = 16/61 (26%), Positives = 28/61 (45%), Gaps = 2/61 (3%)

Query: 1   MLNILIAGPSTGGSMNPVRTLGPAVAVNNY--KAIWIYLTAPILGALCGAGTYSAVKLPE 58
            L  LI+ P T  S+NP R+   A+    +  + +W +   PI+G + G   Y  +    
Sbjct: 171 TLIHLISIPVTNTSVNPARSTAVAIFQGGWALEQLWFFWVVPIVGGIIGGLIYRTLLEKR 230

Query: 59  E 59
           +
Sbjct: 231 D 231

>d1fx8a_ f.19.1.1 (A:) Glycerol uptake facilitator protein GlpF {Escherichia coli [TaxId: 562]} Length = 254

class: Membrane and cell surface proteins and peptides
fold: Aquaporin-like
superfamily: Aquaporin-like
family: Aquaporin-like
domain: Glycerol uptake facilitator protein GlpF
species: Escherichia coli [TaxId: 562]

 Score = 44.4 bits (104), Expect = 1e-07
 Identities = 19/67 (28%), Positives = 26/67 (38%), Gaps = 13/67 (19%)

Query: 1   MLNILIAGPSTGGSMNPVRTLGPAVA-------------VNNYKAIWIYLTAPILGALCG 47
            +     GP TG +MNP R  GP V                +     + L  PI+GA+ G
Sbjct: 183 AVIGASMGPLTGFAMNPARDFGPKVFAWLAGWGNVAFTGGRDIPYFLVPLFGPIVGAIVG 242

Query: 48  AGTYSAV 54
           A  Y  +
Sbjct: 243 AFAYRKL 249

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	75
d1ymga1	234	Aquaporin-0 {Cow (Bos taurus) [TaxId: 9913]}	99.63
d1j4na_	249	Aquaporin-1 {Cow (Bos taurus) [TaxId: 9913]}	99.62
d1rc2a_	231	Aquaporin Z {Escherichia coli [TaxId: 562]}	99.61
d1fx8a_	254	Glycerol uptake facilitator protein GlpF {Escheric	99.61
d1ymga1	234	Aquaporin-0 {Cow (Bos taurus) [TaxId: 9913]}	99.13
d1rc2a_	231	Aquaporin Z {Escherichia coli [TaxId: 562]}	99.05
d1j4na_	249	Aquaporin-1 {Cow (Bos taurus) [TaxId: 9913]}	98.89
d1fx8a_	254	Glycerol uptake facilitator protein GlpF {Escheric	98.82

>d1ymga1 f.19.1.1 (A:6-239) Aquaporin-0 {Cow (Bos taurus) [TaxId: 9913]}

class: Membrane and cell surface proteins and peptides
fold: Aquaporin-like
superfamily: Aquaporin-like
family: Aquaporin-like
domain: Aquaporin-0
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.63  E-value=2.7e-17  Score=111.94  Aligned_cols=56  Identities=30%  Similarity=0.623  Sum_probs=51.7

Q ss_pred             EecccCCCccChHhhHHHHhcccccCceeeehhhhhHHHHHHHHHHHhhcCCCccc
Q 035030            6 IAGPSTGGSMNPVRTLGPAVAVNNYKAIWIYLTAPILGALCGAGTYSAVKLPEEDT   61 (75)
Q Consensus         6 ~~g~~sG~~lNPArs~g~av~~~~~~~~wvy~vgp~lGa~la~~~~~~l~~~~~~~   61 (75)
                      ..+.+||++|||||+|||+++.++|+++|+||+||++|+++++++|++++.|+.+.
T Consensus       169 ~~~~~tG~~~NPAR~~gp~v~~~~~~~~wiy~vgP~~Ga~laa~ly~~~~~~~~~~  224 (234)
T d1ymga1         169 FGMYYTGAGMNPARSFAPAILTRNFTNHWVYWVGPVIGAGLGSLLYDFLLFPRLKS  224 (234)
T ss_dssp             HHHHHHCCCCCHHHHHHHHHHHTCCTTTTHHHHHHHHHHHHHHHHHHTTTSCCCCC
T ss_pred             HhcccccccccchhhhhHHHhccCccCeeeeehHHHHHHHHHHHHHHHHHcCCCcc
Confidence            34568999999999999999999999999999999999999999999999988663

>d1j4na_ f.19.1.1 (A:) Aquaporin-1 {Cow (Bos taurus) [TaxId: 9913]}

class: Membrane and cell surface proteins and peptides
fold: Aquaporin-like
superfamily: Aquaporin-like
family: Aquaporin-like
domain: Aquaporin-1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.62  E-value=4.9e-17  Score=111.23  Aligned_cols=56  Identities=29%  Similarity=0.587  Sum_probs=51.9

Q ss_pred             EecccCCCccChHhhHHHHhcccccCceeeehhhhhHHHHHHHHHHHhhcCCCccc
Q 035030            6 IAGPSTGGSMNPVRTLGPAVAVNNYKAIWIYLTAPILGALCGAGTYSAVKLPEEDT   61 (75)
Q Consensus         6 ~~g~~sG~~lNPArs~g~av~~~~~~~~wvy~vgp~lGa~la~~~~~~l~~~~~~~   61 (75)
                      ..+.+||++|||||+|||+++.++|+++|+||+||++|+++++++|++++.|.+++
T Consensus       184 ~~~~~tG~~~NPAR~lgp~i~~~~~~~~wvy~vgP~iGa~la~~~y~~~~~p~~~~  239 (249)
T d1j4na_         184 LAIDYTGCGINPARSFGSSVITHNFQDHWIFWVGPFIGAALAVLIYDFILAPRSSD  239 (249)
T ss_dssp             HHHHHHCCCCCHHHHHHHHHHTTCCTTTTHHHHHHHHHHHHHHHHHHTTTSCCSSC
T ss_pred             hcccccCcccChhhhhhHHHhccCccCeeeeehHHHHHHHHHHHHHHHhcCCCCCC
Confidence            34567999999999999999999999999999999999999999999999987765

>d1rc2a_ f.19.1.1 (A:) Aquaporin Z {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: Aquaporin-like
superfamily: Aquaporin-like
family: Aquaporin-like
domain: Aquaporin Z
species: Escherichia coli [TaxId: 562]

Probab=99.61  E-value=1.8e-17  Score=111.81  Aligned_cols=55  Identities=27%  Similarity=0.570  Sum_probs=49.6

Q ss_pred             EEecccCCCccChHhhHHHHhccccc--CceeeehhhhhHHHHHHHHHHHhhcCCCc
Q 035030            5 LIAGPSTGGSMNPVRTLGPAVAVNNY--KAIWIYLTAPILGALCGAGTYSAVKLPEE   59 (75)
Q Consensus         5 ~~~g~~sG~~lNPArs~g~av~~~~~--~~~wvy~vgp~lGa~la~~~~~~l~~~~~   59 (75)
                      +..+++||++|||||+|||+++.++|  +++|+||++|++|+++++++|++++.|++
T Consensus       175 ~~~~~~tG~~~NPAr~~gp~i~~~~~~~~~~wvy~~~P~~Ga~~a~~ly~~~~~~~d  231 (231)
T d1rc2a_         175 LISIPVTNTSVNPARSTAVAIFQGGWALEQLWFFWVVPIVGGIIGGLIYRTLLEKRD  231 (231)
T ss_dssp             HHHHHHHCCCCCHHHHHHHHHHHCSHHHHHTTHHHHHHHHHHHHHHHHHHHSSSCCC
T ss_pred             hhccccCCcccchHhhhHHHHHcCCCcccceeEEehHHHHHHHHHHHHHHHHhcCCC
Confidence            44567899999999999999998865  78999999999999999999999998864

>d1fx8a_ f.19.1.1 (A:) Glycerol uptake facilitator protein GlpF {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: Aquaporin-like
superfamily: Aquaporin-like
family: Aquaporin-like
domain: Glycerol uptake facilitator protein GlpF
species: Escherichia coli [TaxId: 562]

Probab=99.61  E-value=4.6e-17  Score=111.74  Aligned_cols=54  Identities=35%  Similarity=0.520  Sum_probs=48.3

Q ss_pred             EEecccCCCccChHhhHHHHhcc-------------cccCceeeehhhhhHHHHHHHHHHHhhcCCC
Q 035030            5 LIAGPSTGGSMNPVRTLGPAVAV-------------NNYKAIWIYLTAPILGALCGAGTYSAVKLPE   58 (75)
Q Consensus         5 ~~~g~~sG~~lNPArs~g~av~~-------------~~~~~~wvy~vgp~lGa~la~~~~~~l~~~~   58 (75)
                      +..+++||++|||||||||+++.             ++|+++|+||+||++|+++++++|++++..|
T Consensus       187 ~~~g~~TG~s~NPAR~lgpai~~~~~~~~~~~~~~~~~~~~~wvy~vgP~~Ga~ia~~~y~~l~~~~  253 (254)
T d1fx8a_         187 ASMGPLTGFAMNPARDFGPKVFAWLAGWGNVAFTGGRDIPYFLVPLFGPIVGAIVGAFAYRKLIGRH  253 (254)
T ss_dssp             HHHHHHHCCCCCHHHHHHHHHHHHHTTTTTHHHHTTCSSCTTHHHHHTTHHHHHHHHHHHHHHTGGG
T ss_pred             hhcccccccccChHHHHHHHHHHhhcccccccccCCCCCCeeehHhHHHHHHHHHHHHHHHHHHhhh
Confidence            34578899999999999999984             4789999999999999999999999998764

>d1ymga1 f.19.1.1 (A:6-239) Aquaporin-0 {Cow (Bos taurus) [TaxId: 9913]}

class: Membrane and cell surface proteins and peptides
fold: Aquaporin-like
superfamily: Aquaporin-like
family: Aquaporin-like
domain: Aquaporin-0
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.13  E-value=1.8e-12  Score=87.75  Aligned_cols=58  Identities=26%  Similarity=0.387  Sum_probs=52.1

Q ss_pred             EEEecccCCCccChHhhHHHHhccc-ccCceeeehhhhhHHHHHHHHHHHhhcCCCccc
Q 035030            4 ILIAGPSTGGSMNPVRTLGPAVAVN-NYKAIWIYLTAPILGALCGAGTYSAVKLPEEDT   61 (75)
Q Consensus         4 v~~~g~~sG~~lNPArs~g~av~~~-~~~~~wvy~vgp~lGa~la~~~~~~l~~~~~~~   61 (75)
                      +++.+++||+|+|||+|++..+.++ +|.....|+++|++|+++|+.+.+.++.++.+.
T Consensus        51 i~~~g~iSGaH~NPAVTla~~~~g~i~~~~~~~Yi~aQ~lGa~~ga~l~~~~~~~~~~~  109 (234)
T d1ymga1          51 VQAVGHISGAHVNPAVTFAFLVGSQMSLLRAICYMVAQLLGAVAGAAVLYSVTPPAVRG  109 (234)
T ss_dssp             HHHHTTTTCCCCSHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCTTTCT
T ss_pred             HHHHhccccCccCchhhHHHHhccCCChhheeeeeehHHHHHHHHHHHHHHHcCccccc
Confidence            4567899999999999999999887 899999999999999999999999998876543

>d1rc2a_ f.19.1.1 (A:) Aquaporin Z {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: Aquaporin-like
superfamily: Aquaporin-like
family: Aquaporin-like
domain: Aquaporin Z
species: Escherichia coli [TaxId: 562]

Probab=99.05  E-value=9.6e-12  Score=83.27  Aligned_cols=56  Identities=21%  Similarity=0.326  Sum_probs=50.0

Q ss_pred             EEEecccCCCccChHhhHHHHhccc-ccCceeeehhhhhHHHHHHHHHHHhhcCCCc
Q 035030            4 ILIAGPSTGGSMNPVRTLGPAVAVN-NYKAIWIYLTAPILGALCGAGTYSAVKLPEE   59 (75)
Q Consensus         4 v~~~g~~sG~~lNPArs~g~av~~~-~~~~~wvy~vgp~lGa~la~~~~~~l~~~~~   59 (75)
                      +++.+++||+|+|||+|++..+.++ +|.....|+++|++|+++|+.+.+.++..+.
T Consensus        51 i~~~g~iSGaH~NPAVTla~~~~g~~~~~~~~~Yi~aQ~lGa~~g~~l~~~i~~~~~  107 (231)
T d1rc2a_          51 AFAVGHISGGHFNPAVTIGLWAGGRFPAKEVVGYVIAQVVGGIVAAALLYLIASGKT  107 (231)
T ss_dssp             HHHHTTTTCCCCSHHHHHHHHHTTCSCTTTHHHHHHHHHHHHHHHHHHHHHHHTTST
T ss_pred             HHHHhcccCccCCCchhHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence            3566899999999999999999887 8999999999999999999999988876654

>d1j4na_ f.19.1.1 (A:) Aquaporin-1 {Cow (Bos taurus) [TaxId: 9913]}

class: Membrane and cell surface proteins and peptides
fold: Aquaporin-like
superfamily: Aquaporin-like
family: Aquaporin-like
domain: Aquaporin-1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=98.89  E-value=4.2e-11  Score=81.29  Aligned_cols=57  Identities=23%  Similarity=0.363  Sum_probs=50.1

Q ss_pred             EEEecccCCCccChHhhHHHHhccc-ccCceeeehhhhhHHHHHHHHHHHhhcCCCcc
Q 035030            4 ILIAGPSTGGSMNPVRTLGPAVAVN-NYKAIWIYLTAPILGALCGAGTYSAVKLPEED   60 (75)
Q Consensus         4 v~~~g~~sG~~lNPArs~g~av~~~-~~~~~wvy~vgp~lGa~la~~~~~~l~~~~~~   60 (75)
                      +++.+++||+|+|||++++..+.++ +|.....|+++|++|+++|+.+.+.++.++.+
T Consensus        66 i~~~g~iSGaH~NPAVTla~~~~g~i~~~~~~~Yi~aQ~lGa~~g~~~~~~~~~~~~~  123 (249)
T d1j4na_          66 AQSVGHISGAHLNPAVTLGLLLSCQISVLRAIMYIIAQCVGAIVATAILSGITSSLPD  123 (249)
T ss_dssp             HHHHHHHHCCCCCHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHHHHHHTTTCTT
T ss_pred             HHHhhccccceeCchhHHHHHhccccchhheeeeeeHHHHHHHHHHhhheeecccccc
Confidence            3456789999999999999999887 88899999999999999999999998865443

>d1fx8a_ f.19.1.1 (A:) Glycerol uptake facilitator protein GlpF {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: Aquaporin-like
superfamily: Aquaporin-like
family: Aquaporin-like
domain: Glycerol uptake facilitator protein GlpF
species: Escherichia coli [TaxId: 562]

Probab=98.82  E-value=4.7e-11  Score=81.29  Aligned_cols=54  Identities=17%  Similarity=0.349  Sum_probs=47.7

Q ss_pred             EEEecccCCCccChHhhHHHHhccc-ccCceeeehhhhhHHHHHHHHHHHhhcCC
Q 035030            4 ILIAGPSTGGSMNPVRTLGPAVAVN-NYKAIWIYLTAPILGALCGAGTYSAVKLP   57 (75)
Q Consensus         4 v~~~g~~sG~~lNPArs~g~av~~~-~~~~~wvy~vgp~lGa~la~~~~~~l~~~   57 (75)
                      +++.+++||+|+|||+|++..+.++ +|.....|+++|++|+++|+.+.+.++.+
T Consensus        51 i~~~g~vSGaH~NPAVTla~~i~g~~~~~~~~~Yi~aQ~lGa~~ga~l~~~~~~~  105 (254)
T d1fx8a_          51 IYLTAGVSGAHLNPAVTIALWLFACFDKRKVIPFIVSQVAGAFCAAALVYGLYYN  105 (254)
T ss_dssp             HHHHHHHHCCCCSHHHHHHHHHHSCCCGGGHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHhccccceEChhhHHHHHHcCCCcHHHhHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            4556788999999999999999987 89999999999999999999988776544