Citrus Sinensis ID: 035032

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70-----
Protein Sequence
MKKALTVVGALAFGWLAIELALKPFLDKVRAAMDKSDPARDPDDAVEGSNEASSESDDAADDKDKDKVKDEPSDA
Secondary Structure (PSIPRED)
ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccHcccccccc
Coil and Loop (DISEMBL)
MKKALTVVGALAFGWLAIELALKPFLDKVRAamdksdpardpddavegsneassesddaaddkdkdkvkdepsda
Flexible Loop (DISEMBL)
MKKALTVVGALAFGWLAIELALKPFLDKVRAAMDksdpardpddavegsneassesddaaddkdkdkvkdepsda
Low Complexity Region (SEG)
MKKALTVVGALAFGWLAIELALKPFLDKVRAAMDKSDPARDPDDAVEGSNeassesddaaddkdkdkvkdepsdA
Disordered region (IsUnstruct)
****LTVVGALAFGWLAIELALKPFLDKV**********************************************
Disordered Region (DISOPRED)
**KALTVVGALAFGWLAIELALKPFLDKV**********************************************
Disordered Region (DISEMBL)
MKKALTVVGALAFGWLAIELALKPFLDKVRAAM******************************************
Disordered Region (DISPRO)
MKKALTVVGALAFGWLAIELALKPFLDKVRAAMD*****************************************
Transmembrane Helix (TMHMM)
oooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
oooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
oooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MKKALTVVGALAFGWLAIELALKPFLDKVRAAMDKSDPARDPDDAVEGSNEASSESDDAADDKDKDKVKDEPSDA
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	75
147779823	70	hypothetical protein VITISV_002769 [Viti	0.8	0.857	0.65	2e-13
359479809	70	PREDICTED: uncharacterized protein LOC10	0.8	0.857	0.633	6e-13
255559486	69	conserved hypothetical protein [Ricinus	0.6	0.652	0.8	1e-12
224082618	77	predicted protein [Populus trichocarpa]	0.52	0.506	0.794	1e-09
15231209	64	outer envelope membrane protein 7 [Arabi	0.573	0.671	0.674	2e-09
297816518	64	hypothetical protein ARALYDRAFT_485609 [	0.573	0.671	0.674	3e-09
388512115	71	unknown [Medicago truncatula]	0.573	0.605	0.697	9e-09
315178134	76	chloroplast outer envelope protein 8 [Su	0.506	0.5	0.657	1e-06
357137289	126	PREDICTED: uncharacterized protein LOC10	0.586	0.349	0.511	4e-06
115448293	101	Os02g0715400 [Oryza sativa Japonica Grou	0.586	0.435	0.488	2e-05

>gi|147779823|emb|CAN77097.1| hypothetical protein VITISV_002769 [Vitis vinifera]

 Score = 79.7 bits (195), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 39/60 (65%), Positives = 44/60 (73%)

Query: 1  MKKALTVVGALAFGWLAIELALKPFLDKVRAAMDKSDPARDPDDAVEGSNEASSESDDAA 60
          +K  + V GALAFGWLAIELA KPFLDK R+A+DKSDP RDPDD  +G     S SDD A
Sbjct: 10 LKSVMVVFGALAFGWLAIELAFKPFLDKARSALDKSDPTRDPDDDEDGGTTQRSLSDDEA 69

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359479809|ref|XP_003632356.1| PREDICTED: uncharacterized protein LOC100854564 [Vitis vinifera]

 Score = 78.2 bits (191), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 38/60 (63%), Positives = 44/60 (73%)

Query: 1  MKKALTVVGALAFGWLAIELALKPFLDKVRAAMDKSDPARDPDDAVEGSNEASSESDDAA 60
          +K  + V GALAFGWLAIELA KPFLDK R+A+DKSDP RDPDD  +G     S SD+ A
Sbjct: 10 LKSVMVVFGALAFGWLAIELAFKPFLDKARSALDKSDPTRDPDDDEDGGTTQKSLSDEEA 69

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255559486|ref|XP_002520763.1| conserved hypothetical protein [Ricinus communis] gi|223540148|gb|EEF41725.1| conserved hypothetical protein [Ricinus communis]

 Score = 77.4 bits (189), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 36/45 (80%), Positives = 41/45 (91%)

Query: 1  MKKALTVVGALAFGWLAIELALKPFLDKVRAAMDKSDPARDPDDA 45
          +K+A+ VVGALAFGWLAIE+A KPFLDK RAAMDKSDP RDPDD+
Sbjct: 6  VKQAMVVVGALAFGWLAIEMAFKPFLDKARAAMDKSDPERDPDDS 50

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224082618|ref|XP_002306767.1| predicted protein [Populus trichocarpa] gi|222856216|gb|EEE93763.1| predicted protein [Populus trichocarpa]

 Score = 67.4 bits (163), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 31/39 (79%), Positives = 34/39 (87%)

Query: 2  KKALTVVGALAFGWLAIELALKPFLDKVRAAMDKSDPAR 40
          K+A  V GALAFGWLAIE+A KPFLDK R+AMDKSDPAR
Sbjct: 7  KQAAVVFGALAFGWLAIEMAFKPFLDKARSAMDKSDPAR 45

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15231209|ref|NP_190810.1| outer envelope membrane protein 7 [Arabidopsis thaliana] gi|4886285|emb|CAB43440.1| outer envelope membrane protein-like protein [Arabidopsis thaliana] gi|34365645|gb|AAQ65134.1| At3g52420 [Arabidopsis thaliana] gi|51968692|dbj|BAD43038.1| outer envelope membrane protein-like protein [Arabidopsis thaliana] gi|51969766|dbj|BAD43575.1| outer envelope membrane protein-like protein [Arabidopsis thaliana] gi|332645423|gb|AEE78944.1| outer envelope membrane protein 7 [Arabidopsis thaliana]

 Score = 66.6 bits (161), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 29/43 (67%), Positives = 36/43 (83%)

Query: 2  KKALTVVGALAFGWLAIELALKPFLDKVRAAMDKSDPARDPDD 44
          K+A  VV A+A GWLAIE+A KPFLDK R+++DKSDP +DPDD
Sbjct: 8  KQATVVVAAMALGWLAIEIAFKPFLDKFRSSIDKSDPTKDPDD 50

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297816518|ref|XP_002876142.1| hypothetical protein ARALYDRAFT_485609 [Arabidopsis lyrata subsp. lyrata] gi|297321980|gb|EFH52401.1| hypothetical protein ARALYDRAFT_485609 [Arabidopsis lyrata subsp. lyrata]

 Score = 66.2 bits (160), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 29/43 (67%), Positives = 36/43 (83%)

Query: 2  KKALTVVGALAFGWLAIELALKPFLDKVRAAMDKSDPARDPDD 44
          K+A  VV ALA GWLAIE+A KPFLD  R+++DKSDP++DPDD
Sbjct: 8  KQATVVVAALALGWLAIEIAFKPFLDTFRSSIDKSDPSKDPDD 50

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388512115|gb|AFK44119.1| unknown [Medicago truncatula]

 Score = 64.3 bits (155), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 30/43 (69%), Positives = 35/43 (81%)

Query: 2  KKALTVVGALAFGWLAIELALKPFLDKVRAAMDKSDPARDPDD 44
          K+A+ V GALAF WLAIELA KPFL + R ++DKSDP RDPDD
Sbjct: 5  KEAVVVAGALAFVWLAIELAFKPFLSQTRDSIDKSDPTRDPDD 47

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|315178134|gb|ADT82942.1| chloroplast outer envelope protein 8 [Suaeda salsa]

 Score = 57.0 bits (136), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 25/38 (65%), Positives = 31/38 (81%)

Query: 1  MKKALTVVGALAFGWLAIELALKPFLDKVRAAMDKSDP 38
          +K+A  V+ ALAFGWL IELA KP+LDK RA ++KSDP
Sbjct: 11 LKQAAIVMSALAFGWLTIELAFKPWLDKARATLNKSDP 48

Source: Suaeda salsa

Species: Suaeda salsa

Genus: Suaeda

Family: Amaranthaceae

Order: Caryophyllales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357137289|ref|XP_003570233.1| PREDICTED: uncharacterized protein LOC100835108 [Brachypodium distachyon]

 Score = 55.8 bits (133), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 23/45 (51%), Positives = 33/45 (73%), Gaps = 1/45 (2%)

Query: 1  MKKALTVVGALAFGWLAIELALKPFLDKVRAAMDKS-DPARDPDD 44
          +K A+ V G L   WL +E A KPFLD++RAA+ +S +P+RDPD+
Sbjct: 13 LKTAVVVTGGLVLAWLTVETAFKPFLDRLRAAVSRSTNPSRDPDE 57

Source: Brachypodium distachyon

Species: Brachypodium distachyon

Genus: Brachypodium

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|115448293|ref|NP_001047926.1| Os02g0715400 [Oryza sativa Japonica Group] gi|42408032|dbj|BAD09168.1| unknown protein [Oryza sativa Japonica Group] gi|113537457|dbj|BAF09840.1| Os02g0715400 [Oryza sativa Japonica Group] gi|125540891|gb|EAY87286.1| hypothetical protein OsI_08689 [Oryza sativa Indica Group] gi|125583456|gb|EAZ24387.1| hypothetical protein OsJ_08142 [Oryza sativa Japonica Group]

 Score = 53.1 bits (126), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 22/45 (48%), Positives = 31/45 (68%), Gaps = 1/45 (2%)

Query: 1  MKKALTVVGALAFGWLAIELALKPFLDKVRAAMDK-SDPARDPDD 44
          +K A+ V G L   W  +E A KPFLD++R A+ + +DPARDPD+
Sbjct: 15 LKTAVVVTGGLVLAWFTMESAFKPFLDRLRGALTRNTDPARDPDE 59

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	75
TAIR|locus:2079929	64	OEP7 "AT3G52420" [Arabidopsis	0.573	0.671	0.674	5e-12
TAIR|locus:2077224	69	OEP6 "AT3G63160" [Arabidopsis	0.453	0.492	0.588	1.9e-05
TAIR|locus:505006290	81	AT2G34585 "AT2G34585" [Arabido	0.626	0.580	0.428	3e-05

TAIR|locus:2079929 OEP7 "AT3G52420" [Arabidopsis thaliana (taxid:3702)]

 Score = 162 (62.1 bits), Expect = 5.0e-12, P = 5.0e-12
 Identities = 29/43 (67%), Positives = 36/43 (83%)

Query:     2 KKALTVVGALAFGWLAIELALKPFLDKVRAAMDKSDPARDPDD 44
             K+A  VV A+A GWLAIE+A KPFLDK R+++DKSDP +DPDD
Sbjct:     8 KQATVVVAAMALGWLAIEIAFKPFLDKFRSSIDKSDPTKDPDD 50

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

GO:0031359 "integral to chloroplast outer membrane" evidence=IDA

TAIR|locus:2077224 OEP6 "AT3G63160" [Arabidopsis thaliana (taxid:3702)]

 Score = 100 (40.3 bits), Expect = 1.9e-05, P = 1.9e-05
 Identities = 20/34 (58%), Positives = 23/34 (67%)

Query:     4 ALTVVGALAFGWLAIELALKPFLDKVRAAMDKSD 37
             A  VVG LA GWLAIEL  KP   K+ ++ DKSD
Sbjct:    24 ATVVVGVLAVGWLAIELVFKPLFKKLSSSKDKSD 57

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0009707 "chloroplast outer membrane" evidence=IDA

GO:0009941 "chloroplast envelope" evidence=IDA

GO:0009535 "chloroplast thylakoid membrane" evidence=IDA

GO:0009579 "thylakoid" evidence=IDA

GO:0000023 "maltose metabolic process" evidence=RCA

GO:0007623 "circadian rhythm" evidence=RCA

GO:0009965 "leaf morphogenesis" evidence=RCA

GO:0019252 "starch biosynthetic process" evidence=RCA

GO:0030154 "cell differentiation" evidence=RCA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=RCA

TAIR|locus:505006290 AT2G34585 "AT2G34585" [Arabidopsis thaliana (taxid:3702)]

 Score = 98 (39.6 bits), Expect = 3.0e-05, P = 3.0e-05
 Identities = 21/49 (42%), Positives = 31/49 (63%)

Query:     4 ALTVVGALAFGWLAIELALKPFLDKVRAAMDKS-DPARDPDDA-VEGSN 50
             A+  +  +  GW+ IELA KP L+  R A+D+S +P  DPDD  V+ S+
Sbjct:     7 AVIAIAGIILGWITIELACKPCLESGREAIDRSLNPDYDPDDQDVDSSS 55


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.317   0.133   0.383    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0       75        51   0.00091  102 3  11 22  0.40    27
                                                     29  0.44    26


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  3
  No. of states in DFA:  375 (40 KB)
  Total size of DFA:  62 KB (2059 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  6.26u 0.17s 6.43t   Elapsed:  00:00:01
  Total cpu time:  6.26u 0.17s 6.43t   Elapsed:  00:00:01
  Start:  Fri May 10 05:03:14 2013   End:  Fri May 10 05:03:15 2013

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0005773 "vacuole" evidence=IDA

GO:0005774 "vacuolar membrane" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

No hit with probability above 80.00

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00