Citrus Sinensis ID: 035104

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70---
Protein Sequence
MASSSSFSSCRYDVFLSFRGEDTRDNFLSHLVEALRQKKIKSFIDNEELSRGDGISPSLLKAIKESKISVIIF
Secondary Structure (PSIPRED)
cccccccccccEEEEEcccccccccccHHHHHHHHHHccccEEEccccccccccccHHHHHHHHHccEEEEEc
Secondary Structure Prediction (SSPRO)
ccccccccccEEEEEEccccHcHHHHHHHHHHHHHHHccccEEEccccccccccccHHHHHHHHHccEEEEEc
Coil and Loop (DISEMBL)
massssfsscrydvflsfrgedtrDNFLSHLVEALRQKKIKSfidneelsrgdgispSLLKAIKESKISVIIF
Flexible Loop (DISEMBL)
massssfsscRYDVFLSFRGEDTRDNFLSHLVEALRQKKIksfidneelsrgdgispsllkaikeskisviif
Low Complexity Region (SEG)
MASSSSFSSCRYDVFLSFRGEDTRDNFLSHLVEALRQKKIKSFIDNEELSRGDGISPSLLKAIKESKISVIIF
Disordered region (IsUnstruct)
*********CRYDVFLSFRGEDTRDNFLSHLVEALRQKKIKSFI*****************************
Disordered Region (DISOPRED)
*********CRYDVFLSFRGEDTRDNFLSHLVEALRQKKIKSFIDNEELSRGDGISPSLLKAIKESKISVIIF
Disordered Region (DISEMBL)
*********CRYDVFLSFRGEDTRDNFLSHLVEALRQKKIKSFIDNEELSRGDGISPSLLKAIKESKISVIIF
Disordered Region (DISPRO)
*******SSCRYDVFLSFRGEDTRDNFLSHLVEALRQKKIKSFIDNEELSRGDGISPSLLKAIKESKISVIIF
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MASSSSFSSCRYDVFLSFRGEDTRDNFLSHLVEALRQKKIKSFIDNEELSRGDGISPSLLKAIKESKISVIIF
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	73	2.2.26 [Sep-21-2011]
O23530	1301	Protein SUPPRESSOR OF npr	yes	no	0.972	0.054	0.589	1e-14
Q40392	1144	TMV resistance protein N	N/A	no	1.0	0.063	0.561	7e-13
O82500	1095	Putative disease resistan	no	no	0.972	0.064	0.561	1e-12
Q9FHE9	354	Protein PHLOEM PROTEIN 2-	no	no	0.972	0.200	0.413	3e-07
Q9FHE8	392	Protein PHLOEM PROTEIN 2-	no	no	0.972	0.181	0.421	9e-07
Q9C5Q9	411	Protein PHLOEM PROTEIN 2-	no	no	0.794	0.141	0.483	1e-06
Q9SYC9	571	Vesicle-associated protei	no	no	0.835	0.106	0.428	2e-06

>sp|O23530|SNC1_ARATH Protein SUPPRESSOR OF npr1-1, CONSTITUTIVE 1 OS=Arabidopsis thaliana GN=SNC1 PE=1 SV=3

 Score = 78.6 bits (192), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 43/73 (58%), Positives = 54/73 (73%), Gaps = 2/73 (2%)

Query: 1  MASSSSFSSCRYDVFLSFRGEDTRDNFLSHLVEALRQKKIKSFIDNEELSRGDGISPSLL 60
          M  +SS  S RYDVF SFRGED RD+FLSHL++ LR K I +FID+ E+ R   I P LL
Sbjct: 1  MEIASSSGSRRYDVFPSFRGEDVRDSFLSHLLKELRGKAI-TFIDD-EIERSRSIGPELL 58

Query: 61 KAIKESKISVIIF 73
           AIKES+I+++IF
Sbjct: 59 SAIKESRIAIVIF 71

Disease resistance protein of the TIR-NB-LRR-type. Part of the RPP5 locus that contains a cluster of several paralogous disease resistance (R) genes. Resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via an indirect interaction with this avirulence protein. That triggers a defense system including the hypersensitive response, which restricts the pathogen growth. Regulated by RNA silencing. Expression regulated by MOS1 at chromatin level. Negatively regulated at the transcript level by BON1.
Arabidopsis thaliana (taxid: 3702)

>sp|Q40392|TMVRN_NICGU TMV resistance protein N OS=Nicotiana glutinosa GN=N PE=1 SV=1

 Score = 72.8 bits (177), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 41/73 (56%), Positives = 50/73 (68%)

Query: 1  MASSSSFSSCRYDVFLSFRGEDTRDNFLSHLVEALRQKKIKSFIDNEELSRGDGISPSLL 60
          MASSSS S   YDVFLSFRGEDTR  F SHL E L  K IK+F D++ L  G  I   L 
Sbjct: 1  MASSSSSSRWSYDVFLSFRGEDTRKTFTSHLYEVLNDKGIKTFQDDKRLEYGATIPGELC 60

Query: 61 KAIKESKISVIIF 73
          KAI+ES+ ++++F
Sbjct: 61 KAIEESQFAIVVF 73

Disease resistance protein. Resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via a direct or indirect interaction with this avirulence protein. That triggers a defense system including the hypersensitive response, which restricts the pathogen growth.

Nicotiana glutinosa (taxid: 35889)

>sp|O82500|Y4117_ARATH Putative disease resistance protein At4g11170 OS=Arabidopsis thaliana GN=At4g11170 PE=2 SV=1

 Score = 71.6 bits (174), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 41/73 (56%), Positives = 51/73 (69%), Gaps = 2/73 (2%)

Query: 1  MASSSSFSSCRYDVFLSFRGEDTRDNFLSHLVEALRQKKIKSFIDNEELSRGDGISPSLL 60
          MASSSS +S RYDVF SFRGED R+NFLSHL++    K I +F D+  + R   I   L 
Sbjct: 1  MASSSS-NSWRYDVFPSFRGEDVRNNFLSHLLKEFESKGIVTFRDD-HIKRSHTIGHELR 58

Query: 61 KAIKESKISVIIF 73
           AI+ESKISV++F
Sbjct: 59 AAIRESKISVVLF 71

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FHE9|P2A08_ARATH Protein PHLOEM PROTEIN 2-LIKE A8 OS=Arabidopsis thaliana GN=PP2A8 PE=2 SV=1

 Score = 53.9 bits (128), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 31/75 (41%), Positives = 48/75 (64%), Gaps = 4/75 (5%)

Query: 1  MASSSSF--SSCRYDVFLSFRGEDTRDNFLSHLVEALRQKKIKSFIDNEELSRGDGISPS 58
          MA+SSS   +     VF++FRG+D R+ FLS L  A+R+  I  FID +E+   D +  +
Sbjct: 1  MAASSSVRPTPTGPQVFINFRGKDLRNGFLSFLEPAMREANINVFIDKDEVVGTDLV--N 58

Query: 59 LLKAIKESKISVIIF 73
          L   I+ES+++V+IF
Sbjct: 59 LFVRIQESRVAVVIF 73

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FHE8|P2A06_ARATH Protein PHLOEM PROTEIN 2-LIKE A6 OS=Arabidopsis thaliana GN=PP2A6 PE=2 SV=1

 Score = 52.0 bits (123), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 32/76 (42%), Positives = 45/76 (59%), Gaps = 5/76 (6%)

Query: 1  MASSSSF---SSCRYDVFLSFRGEDTRDNFLSHLVEALRQKKIKSFIDNEELSRGDGISP 57
          MASSSS    +     VF+ FRG D R +F+S LV ALR+  I  FID  E    +    
Sbjct: 1  MASSSSVVKPTPTGPQVFICFRGADVRKHFISFLVPALREANINVFIDENEFLGSE--MA 58

Query: 58 SLLKAIKESKISVIIF 73
          +LL  I+ES+++++IF
Sbjct: 59 NLLTRIEESELALVIF 74

Arabidopsis thaliana (taxid: 3702)

>sp|Q9C5Q9|P2A05_ARATH Protein PHLOEM PROTEIN 2-LIKE A5 OS=Arabidopsis thaliana GN=PP2A5 PE=2 SV=1

 Score = 51.6 bits (122), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 29/60 (48%), Positives = 41/60 (68%), Gaps = 2/60 (3%)

Query: 14 VFLSFRGEDTRDNFLSHLVEALRQKKIKSFIDNEELSRGDGISPSLLKAIKESKISVIIF 73
          VF++FRG+D R  F+S L  AL+++KI  FID +E  RG  +  SL   I ESKI+++IF
Sbjct: 24 VFINFRGKDLRKGFMSFLKPALKKEKINVFIDEQE-ERGKYLI-SLFDTIGESKIALVIF 81

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SYC9|VAP14_ARATH Vesicle-associated protein 1-4 OS=Arabidopsis thaliana GN=PVA14 PE=2 SV=1

 Score = 51.2 bits (121), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 27/63 (42%), Positives = 45/63 (71%), Gaps = 2/63 (3%)

Query: 11  RYDVFLSFRGEDTRDNFLSHLVEALRQKKIKSFIDNEELSRGDGISPSLLKAIKESKISV 70
           +Y VF++FRG++ R++F+  LV+A+R +KI  F D  EL RG  ++  L + I+ES+++V
Sbjct: 357 QYQVFINFRGDELRNSFVGFLVKAMRLEKINVFTDEVEL-RGTNLN-YLFRRIEESRVAV 414

Query: 71  IIF 73
            IF
Sbjct: 415 AIF 417

May play a role in vesicle trafficking.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	73
224169680	120	predicted protein [Populus trichocarpa]	0.986	0.6	0.648	2e-17
224145016	1254	tir-nbs-lrr resistance protein [Populus	0.986	0.057	0.675	3e-17
224165730	162	predicted protein [Populus trichocarpa]	0.986	0.444	0.621	7e-17
255547496	1097	ATP binding protein, putative [Ricinus c	1.0	0.066	0.630	8e-17
357456781	1158	Resistance protein [Medicago truncatula]	1.0	0.063	0.561	9e-17
255569048	1084	leucine-rich repeat-containing protein,	0.986	0.066	0.643	1e-16
359493388	1196	PREDICTED: TMV resistance protein N-like	0.986	0.060	0.611	2e-16
224145030	1435	tir-nbs-lrr resistance protein [Populus	0.986	0.050	0.635	2e-16
356569977	833	PREDICTED: TMV resistance protein N-like	0.904	0.079	0.611	2e-16
255564928	155	transmembrane receptor, putative [Ricinu	0.835	0.393	0.677	2e-16

>gi|224169680|ref|XP_002339290.1| predicted protein [Populus trichocarpa] gi|222874825|gb|EEF11956.1| predicted protein [Populus trichocarpa]

 Score = 93.2 bits (230), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 48/74 (64%), Positives = 62/74 (83%), Gaps = 2/74 (2%)

Query: 1  MASSSSFSS-CRYDVFLSFRGEDTRDNFLSHLVEALRQKKIKSFIDNEELSRGDGISPSL 59
          MASSS+ +   +YDVFLSFRG+DTR+NF SHL +AL +KKIK+FIDN  L RG+ I+P+L
Sbjct: 1  MASSSAVAHKWKYDVFLSFRGQDTRNNFTSHLYDALCRKKIKTFIDN-GLERGEEITPAL 59

Query: 60 LKAIKESKISVIIF 73
          LK I+ES+ISV+IF
Sbjct: 60 LKTIEESRISVVIF 73

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224145016|ref|XP_002325496.1| tir-nbs-lrr resistance protein [Populus trichocarpa] gi|222862371|gb|EEE99877.1| tir-nbs-lrr resistance protein [Populus trichocarpa]

 Score = 92.8 bits (229), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 50/74 (67%), Positives = 62/74 (83%), Gaps = 2/74 (2%)

Query: 1  MASSSSFSSCR-YDVFLSFRGEDTRDNFLSHLVEALRQKKIKSFIDNEELSRGDGISPSL 59
          MASSSS +  R YDVFLSFRGEDTR+NF SHL +AL +KKIK+FID + L RG+ I+P+L
Sbjct: 1  MASSSSVAHKRKYDVFLSFRGEDTRNNFTSHLYDALCRKKIKTFID-DGLERGEEITPAL 59

Query: 60 LKAIKESKISVIIF 73
          LK I+ES+ISV+IF
Sbjct: 60 LKKIEESRISVVIF 73

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224165730|ref|XP_002338849.1| predicted protein [Populus trichocarpa] gi|222873666|gb|EEF10797.1| predicted protein [Populus trichocarpa]

 Score = 91.3 bits (225), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 46/74 (62%), Positives = 61/74 (82%), Gaps = 2/74 (2%)

Query: 1  MASSSSFSS-CRYDVFLSFRGEDTRDNFLSHLVEALRQKKIKSFIDNEELSRGDGISPSL 59
          MASSS+ +   +YDVFLSFRG+DTRDNF SHL +AL  K+IK+FIDN +L RG+ I P+L
Sbjct: 1  MASSSTTAQQWKYDVFLSFRGKDTRDNFTSHLYDALCHKQIKTFIDN-DLERGEEIEPTL 59

Query: 60 LKAIKESKISVIIF 73
          L+ I++S+ISV+IF
Sbjct: 60 LRTIEDSRISVVIF 73

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255547496|ref|XP_002514805.1| ATP binding protein, putative [Ricinus communis] gi|223545856|gb|EEF47359.1| ATP binding protein, putative [Ricinus communis]

 Score = 90.9 bits (224), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 46/73 (63%), Positives = 56/73 (76%)

Query: 1  MASSSSFSSCRYDVFLSFRGEDTRDNFLSHLVEALRQKKIKSFIDNEELSRGDGISPSLL 60
          MASS++  S +YDVFLSFRGEDTR NF SHL  AL QK + +F D+EEL RG  IS +LL
Sbjct: 1  MASSAAIHSWKYDVFLSFRGEDTRKNFTSHLYAALCQKGVITFRDDEELERGKTISQALL 60

Query: 61 KAIKESKISVIIF 73
          +AI  SKI+VI+F
Sbjct: 61 QAIHGSKIAVIVF 73

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357456781|ref|XP_003598671.1| Resistance protein [Medicago truncatula] gi|355487719|gb|AES68922.1| Resistance protein [Medicago truncatula]

 Score = 90.9 bits (224), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 41/73 (56%), Positives = 54/73 (73%)

Query: 1  MASSSSFSSCRYDVFLSFRGEDTRDNFLSHLVEALRQKKIKSFIDNEELSRGDGISPSLL 60
          M   S+   C YDVFLSFRGEDTR  F  HL  AL Q+ I +F+D+EE+ RG+ ISP+L 
Sbjct: 6  MIFPSTKKMCTYDVFLSFRGEDTRYGFTGHLYNALHQRGINTFMDDEEIKRGEQISPTLF 65

Query: 61 KAIKESKISVIIF 73
          KAI+ES+I++I+F
Sbjct: 66 KAIQESRIAIIVF 78

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255569048|ref|XP_002525493.1| leucine-rich repeat-containing protein, putative [Ricinus communis] gi|223535172|gb|EEF36851.1| leucine-rich repeat-containing protein, putative [Ricinus communis]

 Score = 90.9 bits (224), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 47/73 (64%), Positives = 60/73 (82%), Gaps = 1/73 (1%)

Query: 1  MASSSSFSSCRYDVFLSFRGEDTRDNFLSHLVEALRQKKIKSFIDNEELSRGDGISPSLL 60
          MASSS+    ++DVFLSFRG+DTRDNF SHL +AL +KKIK+FIDN  L RG+ I+P+LL
Sbjct: 1  MASSSNSPKRKFDVFLSFRGKDTRDNFTSHLYDALCRKKIKTFIDN-GLERGEEITPALL 59

Query: 61 KAIKESKISVIIF 73
          + I+ES ISVI+F
Sbjct: 60 RTIEESLISVIVF 72

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359493388|ref|XP_003634583.1| PREDICTED: TMV resistance protein N-like [Vitis vinifera]

 Score = 90.1 bits (222), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 44/72 (61%), Positives = 56/72 (77%)

Query: 2  ASSSSFSSCRYDVFLSFRGEDTRDNFLSHLVEALRQKKIKSFIDNEELSRGDGISPSLLK 61
           SSSS S  RYDV LSFRGEDTR+NF SHL +AL    I++FID+E L RG+ I+P LLK
Sbjct: 10 PSSSSNSKWRYDVVLSFRGEDTRNNFTSHLYKALDHANIETFIDDEGLPRGEEIAPELLK 69

Query: 62 AIKESKISVIIF 73
          AI+ S+I++I+F
Sbjct: 70 AIEGSRIALIVF 81

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224145030|ref|XP_002325501.1| tir-nbs-lrr resistance protein [Populus trichocarpa] gi|222862376|gb|EEE99882.1| tir-nbs-lrr resistance protein [Populus trichocarpa]

 Score = 89.7 bits (221), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 47/74 (63%), Positives = 61/74 (82%), Gaps = 2/74 (2%)

Query: 1  MASSSSFSS-CRYDVFLSFRGEDTRDNFLSHLVEALRQKKIKSFIDNEELSRGDGISPSL 59
          MASSS+ +   +YDVFLSFRG+DTR+NF SHL +AL +KKIK+FID + L RG  I+P+L
Sbjct: 1  MASSSAVAHKWKYDVFLSFRGKDTRNNFTSHLYDALCRKKIKTFID-DRLERGGEITPAL 59

Query: 60 LKAIKESKISVIIF 73
          LK I+ES+ISV+IF
Sbjct: 60 LKTIEESRISVVIF 73

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356569977|ref|XP_003553169.1| PREDICTED: TMV resistance protein N-like [Glycine max]

 Score = 89.7 bits (221), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 41/67 (61%), Positives = 56/67 (83%), Gaps = 1/67 (1%)

Query: 7  FSSCRYDVFLSFRGEDTRDNFLSHLVEALRQKKIKSFIDNEELSRGDGISPSLLKAIKES 66
           S  +YDVFLSFRGEDTR NF SHL EAL+QKK++++ID E L +GD ISP+L+KAI++S
Sbjct: 15 LSPKKYDVFLSFRGEDTRRNFTSHLYEALKQKKVETYID-EHLEKGDEISPALIKAIEDS 73

Query: 67 KISVIIF 73
           +S+++F
Sbjct: 74 HVSIVVF 80

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255564928|ref|XP_002523457.1| transmembrane receptor, putative [Ricinus communis] gi|223537285|gb|EEF38916.1| transmembrane receptor, putative [Ricinus communis]

 Score = 89.4 bits (220), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 42/62 (67%), Positives = 52/62 (83%), Gaps = 1/62 (1%)

Query: 12 YDVFLSFRGEDTRDNFLSHLVEALRQKKIKSFIDNEELSRGDGISPSLLKAIKESKISVI 71
          YDVFLSFRG DTR+NF SHL  ALRQ+ IK+F+DN  L+RG+ I PSL+K I+ES+ISV+
Sbjct: 19 YDVFLSFRGADTRNNFTSHLYAALRQENIKTFMDN-NLTRGEEIEPSLMKVIEESEISVV 77

Query: 72 IF 73
          IF
Sbjct: 78 IF 79

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	73
TAIR|locus:2129236	1301	SNC1 "SUPPRESSOR OF NPR1-1, CO	0.972	0.054	0.589	3.9e-14
UNIPROTKB|Q40392	1144	N "TMV resistance protein N" [	1.0	0.063	0.561	8.8e-14
TAIR|locus:2032723	275	AT1G72920 [Arabidopsis thalian	0.931	0.247	0.529	1.4e-13
TAIR|locus:2153072	1229	AT5G51630 [Arabidopsis thalian	0.972	0.057	0.547	1.1e-12
TAIR|locus:2130270	1449	RPP5 "RECOGNITION OF PERONOSPO	0.986	0.049	0.534	1.8e-12
TAIR|locus:2167457	1191	AT5G36930 [Arabidopsis thalian	0.835	0.051	0.573	1.8e-12
TAIR|locus:2151491	1123	AT5G46450 [Arabidopsis thalian	0.986	0.064	0.540	2.1e-12
TAIR|locus:2032753	371	AT1G72940 [Arabidopsis thalian	0.931	0.183	0.5	2.3e-12
TAIR|locus:2136108	1095	AT4G11170 [Arabidopsis thalian	0.972	0.064	0.561	3.3e-12
TAIR|locus:2028681	1161	AT1G31540 [Arabidopsis thalian	0.986	0.062	0.534	3.6e-12

TAIR|locus:2129236 SNC1 "SUPPRESSOR OF NPR1-1, CONSTITUTIVE 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 196 (74.1 bits), Expect = 3.9e-14, P = 3.9e-14
 Identities = 43/73 (58%), Positives = 54/73 (73%)

Query:     1 MASSSSFSSCRYDVFLSFRGEDTRDNFLSHLVEALRQKKIKSFIDNEELSRGDGISPSLL 60
             M  +SS  S RYDVF SFRGED RD+FLSHL++ LR K I +FID +E+ R   I P LL
Sbjct:     1 MEIASSSGSRRYDVFPSFRGEDVRDSFLSHLLKELRGKAI-TFID-DEIERSRSIGPELL 58

Query:    61 KAIKESKISVIIF 73
              AIKES+I+++IF
Sbjct:    59 SAIKESRIAIVIF 71

GO:0000166 "nucleotide binding" evidence=IEA;ISS

GO:0005737 "cytoplasm" evidence=ISM;IDA

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0009816 "defense response to bacterium, incompatible interaction" evidence=NAS

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=IMP

GO:0009733 "response to auxin stimulus" evidence=IGI

GO:0005515 "protein binding" evidence=IPI

GO:0005634 "nucleus" evidence=IDA

GO:0042742 "defense response to bacterium" evidence=IGI;IMP

GO:0043231 "intracellular membrane-bounded organelle" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

UNIPROTKB|Q40392 N "TMV resistance protein N" [Nicotiana glutinosa (taxid:35889)]

 Score = 192 (72.6 bits), Expect = 8.8e-14, P = 8.8e-14
 Identities = 41/73 (56%), Positives = 50/73 (68%)

Query:     1 MASSSSFSSCRYDVFLSFRGEDTRDNFLSHLVEALRQKKIKSFIDNEELSRGDGISPSLL 60
             MASSSS S   YDVFLSFRGEDTR  F SHL E L  K IK+F D++ L  G  I   L 
Sbjct:     1 MASSSSSSRWSYDVFLSFRGEDTRKTFTSHLYEVLNDKGIKTFQDDKRLEYGATIPGELC 60

Query:    61 KAIKESKISVIIF 73
             KAI+ES+ ++++F
Sbjct:    61 KAIEESQFAIVVF 73

GO:0005515 "protein binding" evidence=IPI

TAIR|locus:2032723 AT1G72920 [Arabidopsis thaliana (taxid:3702)]

 Score = 177 (67.4 bits), Expect = 1.4e-13, P = 1.4e-13
 Identities = 36/68 (52%), Positives = 52/68 (76%)

Query:     5 SSFSSCRYDVFLSFRGEDTRDNFLSHLVEALRQKKIKSFIDNEELSRGDGISPSLLKAIK 64
             SS ++ +YDVFLSFRG DTR NF+S L + L ++KI++F D++EL  G  ISP L +AI+
Sbjct:     2 SSPTATKYDVFLSFRGLDTRRNFISFLYKELVRRKIRTFKDDKELENGRRISPELKRAIE 61

Query:    65 ESKISVII 72
             ESK +V++
Sbjct:    62 ESKFAVVV 69

GO:0005622 "intracellular" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0006952 "defense response" evidence=ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0009611 "response to wounding" evidence=IEP

TAIR|locus:2153072 AT5G51630 [Arabidopsis thaliana (taxid:3702)]

 Score = 182 (69.1 bits), Expect = 1.1e-12, P = 1.1e-12
 Identities = 40/73 (54%), Positives = 50/73 (68%)

Query:     1 MASSSSFSSCRYDVFLSFRGEDTRDNFLSHLVEALRQKKIKSFIDNEELSRGDGISPSLL 60
             MASSSS  S  YDVF SF GED R +FLSHL++ L +K I +FIDN  + R   I+P LL
Sbjct:     1 MASSSS-RSWTYDVFPSFSGEDVRKSFLSHLLKKLHRKSINTFIDNN-IERSHAIAPDLL 58

Query:    61 KAIKESKISVIIF 73
              AI  S IS+++F
Sbjct:    59 SAINNSMISIVVF 71

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2130270 RPP5 "RECOGNITION OF PERONOSPORA PARASITICA 5" [Arabidopsis thaliana (taxid:3702)]

 Score = 181 (68.8 bits), Expect = 1.8e-12, P = 1.8e-12
 Identities = 39/73 (53%), Positives = 51/73 (69%)

Query:     1 MASSSSFSSCRYDVFLSFRGEDTRDNFLSHLVEALRQKKIKSFIDNEELSRGDGISPSLL 60
             MA+SSS    RYDVF SF G D R  FLSHL+EAL  K I +FID+  + R   I+P L+
Sbjct:     1 MAASSSSGRRRYDVFPSFSGVDVRKTFLSHLIEALDGKSINTFIDHG-IERSRTIAPELI 59

Query:    61 KAIKESKISVIIF 73
              AI+E++IS++IF
Sbjct:    60 SAIREARISIVIF 72

GO:0000166 "nucleotide binding" evidence=IEA;TAS

GO:0005622 "intracellular" evidence=IEA

GO:0006952 "defense response" evidence=IEA;ISS;TAS

GO:0007165 "signal transduction" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

GO:0009817 "defense response to fungus, incompatible interaction" evidence=IMP

TAIR|locus:2167457 AT5G36930 [Arabidopsis thaliana (taxid:3702)]

 Score = 180 (68.4 bits), Expect = 1.8e-12, P = 1.8e-12
 Identities = 35/61 (57%), Positives = 47/61 (77%)

Query:    12 YDVFLSFRGEDTRDNFLSHLVEALRQKKIKSFIDNEELSRGDGISPSLLKAIKESKISVI 71
             YDVF+SFRG D R NFLSHL ++LR+  I +F+D+ EL RG+ ISP LL AI+ SKI ++
Sbjct:    17 YDVFVSFRGADVRKNFLSHLYDSLRRCGISTFMDDVELQRGEYISPELLNAIETSKILIV 76

Query:    72 I 72
             +
Sbjct:    77 V 77

GO:0005622 "intracellular" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2151491 AT5G46450 [Arabidopsis thaliana (taxid:3702)]

 Score = 179 (68.1 bits), Expect = 2.1e-12, P = 2.1e-12
 Identities = 40/74 (54%), Positives = 52/74 (70%)

Query:     1 MASSSSFS-SCRYDVFLSFRGEDTRDNFLSHLVEALRQKKIKSFIDNEELSRGDGISPSL 59
             MASSSS S +  YDVF SF GED R  FLSH +  L +K I +F DNE + R   I+P L
Sbjct:     1 MASSSSSSRNWSYDVFPSFSGEDVRKTFLSHFLRELERKSIITFKDNE-MERSQSIAPEL 59

Query:    60 LKAIKESKISVIIF 73
             ++AIK+S+I+VI+F
Sbjct:    60 VEAIKDSRIAVIVF 73

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2032753 AT1G72940 [Arabidopsis thaliana (taxid:3702)]

 Score = 171 (65.3 bits), Expect = 2.3e-12, P = 2.3e-12
 Identities = 34/68 (50%), Positives = 51/68 (75%)

Query:     5 SSFSSCRYDVFLSFRGEDTRDNFLSHLVEALRQKKIKSFIDNEELSRGDGISPSLLKAIK 64
             +S ++ +YDVFLSFRG DTR NF+S L +   ++KI++F D++EL  G  ISP L +AI+
Sbjct:     2 TSPTATKYDVFLSFRGVDTRRNFISFLYKEFVRRKIRTFKDDKELENGRRISPELKRAIE 61

Query:    65 ESKISVII 72
             ESK +V++
Sbjct:    62 ESKFAVVV 69

GO:0005622 "intracellular" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0006952 "defense response" evidence=ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

GO:0006914 "autophagy" evidence=RCA

TAIR|locus:2136108 AT4G11170 [Arabidopsis thaliana (taxid:3702)]

 Score = 177 (67.4 bits), Expect = 3.3e-12, P = 3.3e-12
 Identities = 41/73 (56%), Positives = 51/73 (69%)

Query:     1 MASSSSFSSCRYDVFLSFRGEDTRDNFLSHLVEALRQKKIKSFIDNEELSRGDGISPSLL 60
             MASSSS +S RYDVF SFRGED R+NFLSHL++    K I +F D + + R   I   L 
Sbjct:     1 MASSSS-NSWRYDVFPSFRGEDVRNNFLSHLLKEFESKGIVTFRD-DHIKRSHTIGHELR 58

Query:    61 KAIKESKISVIIF 73
              AI+ESKISV++F
Sbjct:    59 AAIRESKISVVLF 71

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

GO:0005739 "mitochondrion" evidence=IDA

GO:0010193 "response to ozone" evidence=IEP

TAIR|locus:2028681 AT1G31540 [Arabidopsis thaliana (taxid:3702)]

 Score = 177 (67.4 bits), Expect = 3.6e-12, P = 3.6e-12
 Identities = 39/73 (53%), Positives = 51/73 (69%)

Query:     1 MASSSSFSSCRYDVFLSFRGEDTRDNFLSHLVEALRQKKIKSFIDNEELSRGDGISPSLL 60
             MASSSS  +  YDVFLSFRGED R  F SH ++ L +K I +F DNE + R   + P L 
Sbjct:     1 MASSSSSHNWLYDVFLSFRGEDVRVTFRSHFLKELDRKLITAFRDNE-IERSHSLWPDLE 59

Query:    61 KAIKESKISVIIF 73
             +AIKES+I+V++F
Sbjct:    60 QAIKESRIAVVVF 72

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

GO:0009506 "plasmodesma" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	73
PLN03210	1153	PLN03210, PLN03210, Resistant to P	2e-16
pfam01582	135	pfam01582, TIR, TIR domain	3e-16
smart00255	140	smart00255, TIR, Toll - interleukin 1 - resistance	5e-15
PLN03194	187	PLN03194, PLN03194, putative disease resistance pr	4e-06

>gnl|CDD|215633 PLN03210, PLN03210, Resistant to P

 Score = 71.1 bits (174), Expect = 2e-16
 Identities = 38/75 (50%), Positives = 51/75 (68%), Gaps = 4/75 (5%)

Query: 1  MASSSSFSSCR--YDVFLSFRGEDTRDNFLSHLVEALRQKKIKSFIDNEELSRGDGISPS 58
          MASSSS SS    YDVF SF GED R  FLSH ++ L +K I +F DN E+ R   + P 
Sbjct: 1  MASSSS-SSRNWVYDVFPSFSGEDVRITFLSHFLKELDRKLIIAFKDN-EIERSQSLDPE 58

Query: 59 LLKAIKESKISVIIF 73
          L +AI++S+I+V++F
Sbjct: 59 LKQAIRDSRIAVVVF 73

syringae 6; Provisional. Length = 1153

>gnl|CDD|216585 pfam01582, TIR, TIR domain

 Score = 67.3 bits (165), Expect = 3e-16
 Identities = 26/60 (43%), Positives = 43/60 (71%)

Query: 14 VFLSFRGEDTRDNFLSHLVEALRQKKIKSFIDNEELSRGDGISPSLLKAIKESKISVIIF 73
          VF+SF G+D RD F+SHL++ L +K IK  ID+ +   G+ I  +L +AI++S+ +++IF
Sbjct: 1  VFVSFSGKDDRDTFVSHLLKELEEKGIKLCIDDRDELPGESILENLFEAIEKSRRAIVIF 60

The Toll/interleukin-1 receptor (TIR) homology domain is an intracellular signalling domain found in MyD88, interleukin 1 receptor and the Toll receptor. It contains three highly-conserved regions, and mediates protein-protein interactions between the Toll-like receptors (TLRs) and signal-transduction components. TIR-like motifs are also found in plant proteins thought to be involved in resistance to disease. When activated, TIR domains recruit cytoplasmic adaptor proteins MyD88 and TOLLIP (Toll interacting protein). In turn, these associate with various kinases to set off signalling cascades. Length = 135

>gnl|CDD|214587 smart00255, TIR, Toll - interleukin 1 - resistance

 Score = 64.3 bits (157), Expect = 5e-15
 Identities = 27/64 (42%), Positives = 42/64 (65%), Gaps = 3/64 (4%)

Query: 11 RYDVFLSFRG-EDTRDNFLSHLVEALRQKKIKSFIDNEELSRGDGISPSLLKAIKESKIS 69
           YDVF+S+ G ED R+ FLSHL+E LR   +  FID+ E   G G    + +AI++S+I+
Sbjct: 1  EYDVFISYSGKEDVRNEFLSHLLEKLRGYGLCVFIDDFEP--GGGDLEEIDEAIEKSRIA 58

Query: 70 VIIF 73
          +++ 
Sbjct: 59 IVVL 62

Length = 140

>gnl|CDD|215626 PLN03194, PLN03194, putative disease resistance protein; Provisional

 Score = 41.3 bits (97), Expect = 4e-06
 Identities = 24/71 (33%), Positives = 40/71 (56%), Gaps = 2/71 (2%)

Query: 3  SSSSFSSCRYDVFLSFRGEDTRDNFLSHLVEALRQKKIKSFIDNEELSRGDGISPSLLKA 62
          SSSS   C  DVF++ RG DT+    + L + L +  ++ F+DN+ +  GD +   +  A
Sbjct: 20 SSSSAKPC--DVFINHRGIDTKRTIATLLYDHLSRLNLRPFLDNKNMKPGDKLFDKINSA 77

Query: 63 IKESKISVIIF 73
          I+  K+ V +F
Sbjct: 78 IRNCKVGVAVF 88

Length = 187

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	73
PLN03194	187	putative disease resistance protein; Provisional	99.95
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.93
PF01582	141	TIR: TIR domain; InterPro: IPR000157 In Drosophila	99.5
smart00255	140	TIR Toll - interleukin 1 - resistance.	99.38
PF13676	102	TIR_2: TIR domain; PDB: 3H16_B 3UB4_A 2Y92_A 3UB3_	99.21
KOG3678	832	consensus SARM protein (with sterile alpha and arm	98.13
PF08357	150	SEFIR: SEFIR domain; InterPro: IPR013568 This doma	97.28
PF08937	130	DUF1863: MTH538 TIR-like domain (DUF1863); InterPr	97.15
PF10137	125	TIR-like: Predicted nucleotide-binding protein con	96.68
PF13271	83	DUF4062: Domain of unknown function (DUF4062)	92.63
cd00860	91	ThrRS_anticodon ThrRS Threonyl-anticodon binding d	89.81
PF03129	94	HGTP_anticodon: Anticodon binding domain; InterPro	87.85
PRK09194	565	prolyl-tRNA synthetase; Provisional	82.55
cd00738	94	HGTP_anticodon HGTP anticodon binding domain, as f	82.51
PF05014	113	Nuc_deoxyrib_tr: Nucleoside 2-deoxyribosyltransfer	82.21
cd02426	128	Pol_gamma_b_Cterm C-terminal domain of mitochondri	81.53

>PLN03194 putative disease resistance protein; Provisional

Probab=99.95  E-value=5.2e-28  Score=163.72  Aligned_cols=71  Identities=32%  Similarity=0.546  Sum_probs=67.3

Q ss_pred             CCCCCCCCcccEEeeceeccchhchHHHHHHHHhcCCcceeecccccCCCCCCcHHHHHHHhhcceEEEEC
Q 035104            3 SSSSFSSCRYDVFLSFRGEDTRDNFLSHLVEALRQKKIKSFIDNEELSRGDGISPSLLKAIKESKISVIIF   73 (73)
Q Consensus         3 ~~s~s~~~~ydVFiSfrg~D~r~~f~~~L~~~L~~~gi~~f~D~~~l~~G~~i~~~i~~aI~~Sri~IvVf   73 (73)
                      ++|||++.+|||||||||+|+|++|++|||++|+++||+||+|+.++++|+.|.++|.+||++|+++||||
T Consensus        18 ~~~~~~~~~yDVFISFrG~DtR~~FvshL~~aL~~~GI~vF~D~~el~~G~~i~~~L~~AIeeSri~IvVf   88 (187)
T PLN03194         18 PSSSSSAKPCDVFINHRGIDTKRTIATLLYDHLSRLNLRPFLDNKNMKPGDKLFDKINSAIRNCKVGVAVF   88 (187)
T ss_pred             ccCCCCCCCCcEEEeCCCccccccHHHHHHHHHHHCCCEEEEcCccccCCCcHHHHHHHHHHhCeEEEEEE
Confidence            45566689999999999999999999999999999999999999999999999999999999999999997

>PLN03210 Resistant to P

Probab=99.93  E-value=2.2e-26  Score=183.91  Aligned_cols=72  Identities=51%  Similarity=0.794  Sum_probs=68.6

Q ss_pred             CCCCCCCC-CCcccEEeeceeccchhchHHHHHHHHhcCCcceeecccccCCCCCCcHHHHHHHhhcceEEEEC
Q 035104            1 MASSSSFS-SCRYDVFLSFRGEDTRDNFLSHLVEALRQKKIKSFIDNEELSRGDGISPSLLKAIKESKISVIIF   73 (73)
Q Consensus         1 Ma~~s~s~-~~~ydVFiSfrg~D~r~~f~~~L~~~L~~~gi~~f~D~~~l~~G~~i~~~i~~aI~~Sri~IvVf   73 (73)
                      ||+||||+ .|+|||||||||+|||++|++|||++|.++||++|+|+ ++++|+.|.+++.+||++|||+||||
T Consensus         1 ~~~~~~~~~~~~~~vf~sfrg~d~r~~f~~hl~~~l~~~~i~~f~d~-~~~~g~~~~~~l~~~i~~s~~~ivv~   73 (1153)
T PLN03210          1 MASSSSSSRNWVYDVFPSFSGEDVRITFLSHFLKELDRKLIIAFKDN-EIERSQSLDPELKQAIRDSRIAVVVF   73 (1153)
T ss_pred             CCCCCCCCCCCCCcEEeeCCCcccccCHHHHHHHHHHHCCCeEEccC-CccCCCcccHHHHHHHHhCeEEEEEe
Confidence            88887765 89999999999999999999999999999999999998 59999999999999999999999997

syringae 6; Provisional

>PF01582 TIR: TIR domain; InterPro: IPR000157 In Drosophila melanogaster the Toll protein is involved in establishment of dorso-ventral polarity in the embryo

Probab=99.50  E-value=1.4e-14  Score=92.15  Aligned_cols=60  Identities=30%  Similarity=0.635  Sum_probs=54.9

Q ss_pred             EEeeceeccchhchHHHHHHHHhcC--CcceeecccccCCCCCCcHHHHHHHhhcceEEEEC
Q 035104           14 VFLSFRGEDTRDNFLSHLVEALRQK--KIKSFIDNEELSRGDGISPSLLKAIKESKISVIIF   73 (73)
Q Consensus        14 VFiSfrg~D~r~~f~~~L~~~L~~~--gi~~f~D~~~l~~G~~i~~~i~~aI~~Sri~IvVf   73 (73)
                      |||||++.+++..|+.+|..+|+++  |+++|++++++.+|..+.+++.++|++||..|+||
T Consensus         1 vfisy~~~~d~~~~~~~L~~~Le~~~~g~~~c~~~rD~~~G~~~~~~i~~~i~~Sr~~I~Vl   62 (141)
T PF01582_consen    1 VFISYSGKDDREWFVSHLLPELEERPYGYKLCLDERDFLPGESILDNIQEAIERSRRTIVVL   62 (141)
T ss_dssp             EEEEE-GHHGHHHHHHCHHHHHHCTSSTS-EEEHHHCTSSSSCHHHHHHHHHHTEEEEEEEE
T ss_pred             cEEEeCCCCcHHHHHHHHHHHHHhCCCCeEEEEechhhcccccccchhhHhhhhceeeEEEe
Confidence            8999999666789999999999999  99999999999999999999999999999999996

In addition, members of the Toll family play a key role in innate antibacterial and antifungal immunity in insects as well as in mammals. These proteins are type-I transmembrane receptors that share an intracellular 200 residue domain with the interleukin-1 receptor (IL-1R), the Toll/IL-1R homologous region (TIR). The similarity between Toll-like receptors (LTRs) and IL-1R is not restricted to sequence homology since these proteins also share a similar signalling pathway. They both induce the activation of a Rel type transcription factor via an adaptor protein and a protein kinase []. Interestingly, MyD88, a cytoplasmic adaptor protein found in mammals, contains a TIR domain associated to a DEATH domain (see IPR000488 from INTERPRO) [, , ]. Besides the mammalian and Drosophila melanogaster proteins, a TIR domain is also found in a number of plant proteins implicated in host defence []. As MyD88, these proteins are cytoplasmic. Site directed mutagenesis and deletion analysis have shown that the TIR domain is essential for Toll and IL-1R activities. Sequence analysis have revealed the presence of three highly conserved regions among the different members of the family: box 1 (FDAFISY), box 2 (GYKLC-RD-PG), and box 3 (a conserved W surrounded by basic residues). It has been proposed that boxes 1 and 2 are involved in the binding of proteins involved in signalling, whereas box 3 is primarily involved in directing localization of receptor, perhaps through interactions with cytoskeletal elements [].; GO: 0005515 protein binding, 0007165 signal transduction, 0005622 intracellular; PDB: 3J0A_A 2J67_B 3JRN_A 1FYV_A 1O77_D 1FYX_A 1FYW_A 3OZI_B 1T3G_B 2JS7_A ....

>smart00255 TIR Toll - interleukin 1 - resistance

Probab=99.38  E-value=5.9e-13  Score=83.16  Aligned_cols=61  Identities=43%  Similarity=0.776  Sum_probs=51.7

Q ss_pred             cccEEeecee-ccchhchHHHHHHHHhcCCcceeecccccCCCCCCcHHHHHHHhhcceEEEEC
Q 035104           11 RYDVFLSFRG-EDTRDNFLSHLVEALRQKKIKSFIDNEELSRGDGISPSLLKAIKESKISVIIF   73 (73)
Q Consensus        11 ~ydVFiSfrg-~D~r~~f~~~L~~~L~~~gi~~f~D~~~l~~G~~i~~~i~~aI~~Sri~IvVf   73 (73)
                      .|||||||++ ++..+.|+.+|...|...|+.+|.|+..+ .|.... +|.++|++|+..|+|+
T Consensus         1 ~~dvFISys~~~~~~~~~v~~L~~~l~~~~~~v~~d~~~~-~~~~~~-~i~~~i~~s~~~i~vl   62 (140)
T smart00255        1 EYDVFISYSGKEDVRNEFLSHLLEKLRGYGLCVFIDDFEP-GGGDLE-EIDEAIEKSRIAIVVL   62 (140)
T ss_pred             CCeEEEECCCCHHHHHHHHHHHHHHhhcCCcEEEecCccc-ccchHH-HHHHHHHHCcEEEEEE
Confidence            5999999999 56778999999999999999999998633 333333 9999999999999885

>PF13676 TIR_2: TIR domain; PDB: 3H16_B 3UB4_A 2Y92_A 3UB3_A 3UB2_A

Probab=99.21  E-value=3.4e-12  Score=76.67  Aligned_cols=57  Identities=28%  Similarity=0.593  Sum_probs=48.3

Q ss_pred             EEeeceeccchhchHHHHHHHHhcCCcceeecccccCCCCCCcHHHHHHHhhcceEEEEC
Q 035104           14 VFLSFRGEDTRDNFLSHLVEALRQKKIKSFIDNEELSRGDGISPSLLKAIKESKISVIIF   73 (73)
Q Consensus        14 VFiSfrg~D~r~~f~~~L~~~L~~~gi~~f~D~~~l~~G~~i~~~i~~aI~~Sri~IvVf   73 (73)
                      |||||+++|  +.++..|...|++.|+++|+|. ++.+|+.+...+.++|++|+..|+++
T Consensus         1 VFIS~~~~D--~~~a~~l~~~L~~~g~~v~~d~-~~~~g~~~~~~i~~~i~~s~~~i~~~   57 (102)
T PF13676_consen    1 VFISYSSED--REFAERLAERLESAGIRVFLDR-DIPPGEDWREEIERAIERSDCVIVLL   57 (102)
T ss_dssp             EEEEEEGGG--CCCHHHHHHHHHHTT--EE-GG-EE-TTS-HHCCCHHCCTTEEEEEEEE
T ss_pred             eEEEecCCc--HHHHHHHHHHHhhcCCEEEEEE-eCCCCCCHHHHHHHHHHhCCEEEEEE
Confidence            899999999  4699999999999999999997 89999999999999999999988874

>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]

Probab=98.13  E-value=5.4e-06  Score=64.24  Aligned_cols=63  Identities=32%  Similarity=0.509  Sum_probs=55.4

Q ss_pred             CCcccEEeeceeccchhchHHHHHHHHhcCCcceeecccccCCCCCCcHHHHHHHhhcceEEEEC
Q 035104            9 SCRYDVFLSFRGEDTRDNFLSHLVEALRQKKIKSFIDNEELSRGDGISPSLLKAIKESKISVIIF   73 (73)
Q Consensus         9 ~~~ydVFiSfrg~D~r~~f~~~L~~~L~~~gi~~f~D~~~l~~G~~i~~~i~~aI~~Sri~IvVf   73 (73)
                      ....|||||||.. +.+..++.|--.|+-+|+++|+|-++++.|+ +.+.+++.|...+-.|.|+
T Consensus       610 skq~DVFISYRRs-tGnQLASLiKV~LQL~GyrVFIDVdKL~AGK-FdssLlkni~aAkhFiLVL  672 (832)
T KOG3678|consen  610 SKQIDVFISYRRS-TGNQLASLIKVLLQLRGYRVFIDVDKLYAGK-FDSSLLKNIQAAKHFILVL  672 (832)
T ss_pred             cCCcceEEEeecc-ccHHHHHHHHHHHHhcCceEEEehhhhhccc-ccHHHHHHHHhhheeEEEe
Confidence            4678999999986 5678999999999999999999988899886 4679999999999998885

>PF08357 SEFIR: SEFIR domain; InterPro: IPR013568 This domain is found in IL17 receptors (IL17Rs, e

Probab=97.28  E-value=0.00071  Score=42.95  Aligned_cols=61  Identities=26%  Similarity=0.438  Sum_probs=48.6

Q ss_pred             cEEeeceeccchh-chHHHHHHHHhcC-CcceeecccccCC--CCCCcHHHHHHHhhcceEEEEC
Q 035104           13 DVFLSFRGEDTRD-NFLSHLVEALRQK-KIKSFIDNEELSR--GDGISPSLLKAIKESKISVIIF   73 (73)
Q Consensus        13 dVFiSfrg~D~r~-~f~~~L~~~L~~~-gi~~f~D~~~l~~--G~~i~~~i~~aI~~Sri~IvVf   73 (73)
                      -|||+|+.+...+ ..|..|...|++. |+.|.+|.-+...  +.....=+.+.|+++...|+|.
T Consensus         2 kVfI~Ys~d~~~h~~~V~~la~~L~~~~g~~V~lD~~~~~~i~~~g~~~W~~~~~~~ad~Vliv~   66 (150)
T PF08357_consen    2 KVFISYSHDSEEHKEWVLALAEFLRQNCGIDVILDQWELNEIARQGPPRWMERQIREADKVLIVC   66 (150)
T ss_pred             eEEEEeCCCCHHHHHHHHHHHHHHHhccCCceeecHHhhcccccCCHHHHHHHHHhcCCEEEEEe
Confidence            4999999865433 5689999999999 9999999765533  5566667788899999888873

g. Q60943 from SWISSPROT) and SEF proteins (e.g. Q8QHJ9 from SWISSPROT). The latter are feedback inhibitors of FGF signalling and are also thought to be receptors. Due to its similarity to the TIR domain (IPR000157 from INTERPRO), the SEFIR region is thought to be involved in homotypic interactions with other SEFIR/TIR-domain-containing proteins. Thus, SEFs and IL17Rs may be involved in TOLL/IL1R-like signalling pathways [].

>PF08937 DUF1863: MTH538 TIR-like domain (DUF1863); InterPro: IPR015032 This protein adopts the flavodoxin fold, that is, five parallel beta-strands and four helical segments

Probab=97.15  E-value=0.00086  Score=42.20  Aligned_cols=60  Identities=23%  Similarity=0.450  Sum_probs=29.3

Q ss_pred             ccEEeeceeccchhchHHHHHHHHhcC-------Ccce-e---------ecccccCCCCCCcHHHHHHHhhcceEEEE
Q 035104           12 YDVFLSFRGEDTRDNFLSHLVEALRQK-------KIKS-F---------IDNEELSRGDGISPSLLKAIKESKISVII   72 (73)
Q Consensus        12 ydVFiSfrg~D~r~~f~~~L~~~L~~~-------gi~~-f---------~D~~~l~~G~~i~~~i~~aI~~Sri~IvV   72 (73)
                      |.|||||+..|.. .....|...+...       ++.. |         .+..+....+.|...|-++|+.|.+.||+
T Consensus         1 ~~vFIS~~~~d~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~I~~~i~~s~~~IVL   77 (130)
T PF08937_consen    1 YKVFISYSHDDDD-WYYDQLKEWLENSYEIPRDKNFDFRFYDVSKWEPIRSRDDDSSSEYIKRKIRERIKNSSVTIVL   77 (130)
T ss_dssp             ----------THH--HHHHHHHHHHH-------TTSS--BT---TTT---TTS---TTTTHHHHHHHHHHTEEEEEEE
T ss_pred             CCccccccccCcH-HHHHHHHHHhccccccccccccccCcccccccCcccCccccchHHHHHHHHHHHHhcCCEEEEE
Confidence            6899999999854 3666666666663       2211 1         12222223347889999999999999986

The structure is a three-layer sandwich with alpha-1 and alpha-4 on one side of the beta-sheet, and alpha-2 and alpha-3 on the other side. Probable role in signal transduction as a phosphorylation-independent conformational switch protein []. This domain is similar to the TIR domain [].; PDB: 3HYN_A.

>PF10137 TIR-like: Predicted nucleotide-binding protein containing TIR-like domain; InterPro: IPR019302 This entry represents a TIR-like domain found in a family of prokaryotic predicted nucleotide-binding proteins

Probab=96.68  E-value=0.0073  Score=38.68  Aligned_cols=58  Identities=19%  Similarity=0.285  Sum_probs=49.3

Q ss_pred             cEEeeceeccchhchHHHHHHHHhcCCcceeecccccCCCCCCcHHHHHHHhhcceEEEEC
Q 035104           13 DVFLSFRGEDTRDNFLSHLVEALRQKKIKSFIDNEELSRGDGISPSLLKAIKESKISVIIF   73 (73)
Q Consensus        13 dVFiSfrg~D~r~~f~~~L~~~L~~~gi~~f~D~~~l~~G~~i~~~i~~aI~~Sri~IvVf   73 (73)
                      .|||.|. .|.  .....+..-|+..|+.+.+-.+....|..+-..+.+...++..+|++|
T Consensus         1 kVFIvhg-~~~--~~~~~v~~~L~~~~~ep~i~~~~~~~g~tiie~le~~~~~~~faIvl~   58 (125)
T PF10137_consen    1 KVFIVHG-RDL--AAAEAVERFLEKLGLEPIIWHEQPNLGQTIIEKLEEAADSVDFAIVLF   58 (125)
T ss_pred             CEEEEeC-CCH--HHHHHHHHHHHhCCCceEEeecCCCCCCchHHHHHHHhccCCEEEEEE
Confidence            3899997 653  467788888888899999887778899999999999999999999986

Their exact function has not, as yet, been defined.

>PF13271 DUF4062: Domain of unknown function (DUF4062)

Probab=92.63  E-value=0.54  Score=27.42  Aligned_cols=59  Identities=22%  Similarity=0.188  Sum_probs=41.6

Q ss_pred             EEeeceeccchhchHHHHHHHHhcCCcceeecccccCCCCCCcHHHHHHHhhcceEEEEC
Q 035104           14 VFLSFRGEDTRDNFLSHLVEALRQKKIKSFIDNEELSRGDGISPSLLKAIKESKISVIIF   73 (73)
Q Consensus        14 VFiSfrg~D~r~~f~~~L~~~L~~~gi~~f~D~~~l~~G~~i~~~i~~aI~~Sri~IvVf   73 (73)
                      ||||-.-.|.. .-=..|.+.+.+.|..+..-+.-..++......+++.|++|.+.|.++
T Consensus         2 VFiSSt~~Dl~-~eR~~l~~~i~~~~~~~~~~e~~~a~~~~~~~~cl~~v~~cDifI~il   60 (83)
T PF13271_consen    2 VFISSTFRDLK-EERDALIEAIRRLGCEPVGMEFFPASDQSPLEICLKEVDECDIFILIL   60 (83)
T ss_pred             EEEecChhhHH-HHHHHHHHHHHHCCCeeeeeeeecCCCCCHHHHHHHHHhhCCEEEEee
Confidence            89998777753 344678888888887665533212335556678899999999998874

>cd00860 ThrRS_anticodon ThrRS Threonyl-anticodon binding domain

Probab=89.81  E-value=0.72  Score=26.16  Aligned_cols=47  Identities=11%  Similarity=0.183  Sum_probs=32.3

Q ss_pred             cccEEeeceeccchhchHHHHHHHHhcCCcceeecccccCCCCCCcHHHHHH
Q 035104           11 RYDVFLSFRGEDTRDNFLSHLVEALRQKKIKSFIDNEELSRGDGISPSLLKA   62 (73)
Q Consensus        11 ~ydVFiSfrg~D~r~~f~~~L~~~L~~~gi~~f~D~~~l~~G~~i~~~i~~a   62 (73)
                      +++|+|..-+++. ..-+-.+...|++.|+++-+|...    .++...+..|
T Consensus         1 p~~v~ii~~~~~~-~~~a~~~~~~Lr~~g~~v~~d~~~----~~~~~~~~~a   47 (91)
T cd00860           1 PVQVVVIPVTDEH-LDYAKEVAKKLSDAGIRVEVDLRN----EKLGKKIREA   47 (91)
T ss_pred             CeEEEEEeeCchH-HHHHHHHHHHHHHCCCEEEEECCC----CCHHHHHHHH
Confidence            3787777665544 357789999999999999988642    3444444443

ThrRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only.

>PF03129 HGTP_anticodon: Anticodon binding domain; InterPro: IPR004154 tRNA synthetases, or tRNA ligases are involved in protein synthesis

Probab=87.85  E-value=2.2  Score=24.57  Aligned_cols=44  Identities=18%  Similarity=0.249  Sum_probs=30.0

Q ss_pred             hchHHHHHHHHhcCCcceeecccccCCCCCCcHHHHHHH-hhcceEEEE
Q 035104           25 DNFLSHLVEALRQKKIKSFIDNEELSRGDGISPSLLKAI-KESKISVII   72 (73)
Q Consensus        25 ~~f~~~L~~~L~~~gi~~f~D~~~l~~G~~i~~~i~~aI-~~Sri~IvV   72 (73)
                      ..++.+|...|++.||.+.+|+.    +..+...+-.|- .+.++.|+|
T Consensus        15 ~~~a~~l~~~L~~~gi~v~~d~~----~~~~~k~~~~a~~~g~p~~iii   59 (94)
T PF03129_consen   15 IEYAQELANKLRKAGIRVELDDS----DKSLGKQIKYADKLGIPFIIII   59 (94)
T ss_dssp             HHHHHHHHHHHHHTTSEEEEESS----SSTHHHHHHHHHHTTESEEEEE
T ss_pred             HHHHHHHHHHHHHCCCEEEEECC----CCchhHHHHHHhhcCCeEEEEE
Confidence            35789999999999999999974    344444554444 334555443

This domain is found in histidyl, glycyl, threonyl and prolyl tRNA synthetases [] it is probably the anticodon binding domain [].; GO: 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding; PDB: 1KOG_B 1EVL_D 1EVK_B 1QF6_A 1FYF_B 2I4O_A 2I4M_A 2I4N_A 2I4L_A 1HC7_D ....

>PRK09194 prolyl-tRNA synthetase; Provisional

Probab=82.55  E-value=1.7  Score=33.56  Aligned_cols=47  Identities=15%  Similarity=0.268  Sum_probs=34.3

Q ss_pred             CCcccEEeecee--ccchhchHHHHHHHHhcCCcceeecccccCCCCCC
Q 035104            9 SCRYDVFLSFRG--EDTRDNFLSHLVEALRQKKIKSFIDNEELSRGDGI   55 (73)
Q Consensus         9 ~~~ydVFiSfrg--~D~r~~f~~~L~~~L~~~gi~~f~D~~~l~~G~~i   55 (73)
                      .-+++|+|---+  .+.-...+..|+..|++.||.+.+|+++-..|..+
T Consensus       466 iaP~~v~Iv~~~~~~~~~~~~a~~i~~~L~~~gi~v~~Ddr~~~~g~k~  514 (565)
T PRK09194        466 IAPFDVHIVPVNMKDEEVKELAEKLYAELQAAGIEVLLDDRKERPGVKF  514 (565)
T ss_pred             cCCceEEEEECCCCcHHHHHHHHHHHHHHhccCCeEEEECCCCCHHHHH
Confidence            355899887554  23334688999999999999999998754455444

>cd00738 HGTP_anticodon HGTP anticodon binding domain, as found at the C-terminus of histidyl, glycyl, threonyl and prolyl tRNA synthetases, which are classified as a group of class II aminoacyl-tRNA synthetases (aaRS)

Probab=82.51  E-value=6.7  Score=22.07  Aligned_cols=46  Identities=20%  Similarity=0.298  Sum_probs=30.6

Q ss_pred             ccEEeeceec---cchhchHHHHHHHHhcCCcceeecccccCCCCCCcHHHHHH
Q 035104           12 YDVFLSFRGE---DTRDNFLSHLVEALRQKKIKSFIDNEELSRGDGISPSLLKA   62 (73)
Q Consensus        12 ydVFiSfrg~---D~r~~f~~~L~~~L~~~gi~~f~D~~~l~~G~~i~~~i~~a   62 (73)
                      ++|+|-.-++   .. ...+-.+...|++.|+.+-+|..    +.++...+..|
T Consensus         2 ~~v~ii~~~~~~~~~-~~~a~~~~~~Lr~~g~~v~~~~~----~~~~~k~~~~a   50 (94)
T cd00738           2 IDVAIVPLTDPRVEA-REYAQKLLNALLANGIRVLYDDR----ERKIGKKFREA   50 (94)
T ss_pred             eEEEEEECCCCcHHH-HHHHHHHHHHHHHCCCEEEecCC----CcCHhHHHHHH
Confidence            5766655443   32 35778899999999999988764    34555444444

In aaRSs, the anticodon binding domain is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only. This domain is also found in the accessory subunit of mitochondrial polymerase gamma (Pol gamma b).

>PF05014 Nuc_deoxyrib_tr: Nucleoside 2-deoxyribosyltransferase; InterPro: IPR007710 Nucleoside 2-deoxyribosyltransferase (2

Probab=82.21  E-value=2.2  Score=25.79  Aligned_cols=49  Identities=18%  Similarity=0.226  Sum_probs=35.4

Q ss_pred             hchHHHHHHHHhcCCcceeecccccC--------CCCCCcHHHHHHHhhcceEEEEC
Q 035104           25 DNFLSHLVEALRQKKIKSFIDNEELS--------RGDGISPSLLKAIKESKISVIIF   73 (73)
Q Consensus        25 ~~f~~~L~~~L~~~gi~~f~D~~~l~--------~G~~i~~~i~~aI~~Sri~IvVf   73 (73)
                      ..+...+.++|++.|+.+|...+.-.        +.+.|...-.++|++|.+.|+++
T Consensus        13 ~~~~~~~~~~L~~~g~~v~~P~~~~~~~~~~~~~~~~~i~~~d~~~i~~~D~via~l   69 (113)
T PF05014_consen   13 KARVERLREALEKNGFEVYSPQDNDENDEEDSQEWAREIFERDLEGIRECDIVIANL   69 (113)
T ss_dssp             HHHHHHHHHHHHTTTTEEEGGCTCSSS--TTSHHCHHHHHHHHHHHHHHSSEEEEEE
T ss_pred             HHHHHHHHHHHHhCCCEEEeccccccccccccchHHHHHHHHHHHHHHHCCEEEEEC
Confidence            46889999999999999987542111        12234445568999999999864

4.2.6 from EC) catalyses the cleavage of the glycosidic bonds of 2-deoxyribonucleosides. Nucleoside 2-deoxyribosyltransferases can be divided into two groups based on their substrate specificity: class I enzymes are specific for the transfer of deoxyribose between two purines, while class II enzymes will transfer the deoxyribose between either purines or pyrimidines. The structure of the class I [] and class II [] enzymes are very similar. In class I enzymes, the purine base shields the active site from solvent, which the smaller pyrimidine base cannot do, while in class II enzymes the active site is shielded by a loop (residues 48-62). Both classes of enzymes are found in various Lactobacillus species and participate in nucleoside recycling in these microorganisms. This entry represents both classes of enzymes.; GO: 0050144 nucleoside deoxyribosyltransferase activity, 0070694 deoxyribonucleoside 5'-monophosphate N-glycosidase activity, 0009159 deoxyribonucleoside monophosphate catabolic process; PDB: 1S2L_A 1S2D_C 1S2I_A 1S3F_B 1S2G_C 2A0K_A 2F67_A 2F64_B 2F62_A 2F2T_A ....

>cd02426 Pol_gamma_b_Cterm C-terminal domain of mitochondrial DNA polymerase gamma B subunit, which is required for processivity

Probab=81.53  E-value=1.4  Score=27.87  Aligned_cols=34  Identities=15%  Similarity=0.103  Sum_probs=26.0

Q ss_pred             cchhchHHHHHHHHhcCCcceeeccccc---CCCCCC
Q 035104           22 DTRDNFLSHLVEALRQKKIKSFIDNEEL---SRGDGI   55 (73)
Q Consensus        22 D~r~~f~~~L~~~L~~~gi~~f~D~~~l---~~G~~i   55 (73)
                      +.-...+..||+.|+..|+.+..|++.-   .+|..+
T Consensus        40 ~~~~~~a~~l~~~L~~~gi~v~~D~r~~~~~~~G~k~   76 (128)
T cd02426          40 AELRDLCQGLKNELREAGLSVWPGYLETQHSSLEQLL   76 (128)
T ss_pred             HHHHHHHHHHHHHHHHcCCEEEeccCcccccCHHHHH
Confidence            3345688999999999999999998643   355544

Polymerase gamma replicates and repairs mitochondrial DNA. The c-terminal domain of its B subunit is strikingly similar to the anticodon-binding domain of glycyl tRNA synthetase.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	73
3ozi_A	204	Crystal Structure Of The Tir Domain From The Flax D		2e-14
3jrn_A	176	Crystal Structure Of Tir Domain From Arabidopsis Th		5e-12

>pdb|3OZI|A Chain A, Crystal Structure Of The Tir Domain From The Flax Disease Resistance Protein L6 Length = 204

Iteration: 1
 Score = 73.9 bits (180), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 37/69 (53%), Positives = 49/69 (71%)
Query: 4  SSSFSSCRYDVFLSFRGEDTRDNFLSHLVEALRQKKIKSFIDNEELSRGDGISPSLLKAI 63
          S SF S  Y+VFLSFRG DTR+ F   L ++LR+ KI +F D++EL +G  I P+LL+AI
Sbjct: 28 SGSFPSVEYEVFLSFRGPDTREQFTDFLYQSLRRYKIHTFRDDDELLKGKEIGPNLLRAI 87
Query: 64 KESKISVII 72
           +SKI V I
Sbjct: 88 DQSKIYVPI 96

>pdb|3JRN|A Chain A, Crystal Structure Of Tir Domain From Arabidopsis Thaliana Length = 176

Iteration: 1
 Score = 66.2 bits (160), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 31/68 (45%), Positives = 47/68 (69%)
Query: 5  SSFSSCRYDVFLSFRGEDTRDNFLSHLVEALRQKKIKSFIDNEELSRGDGISPSLLKAIK 64
          SS ++ +YDVFLSFRG DTR NF+S L + L ++ I++F D++EL  G   SP L   I+
Sbjct: 2  SSHTATKYDVFLSFRGHDTRHNFISFLYKELVRRSIRTFKDDKELENGQRFSPELKSPIE 61
Query: 65 ESKISVII 72
           S+ +V++
Sbjct: 62 VSRFAVVV 69

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	73
3jrn_A	176	AT1G72930 protein; TIR domain arabidopsis thaliana	2e-36
3ozi_A	204	L6TR; plant TIR domain, plant protein; 2.30A {Linu	4e-36
3h16_A	154	TIR protein; bacteria TIR domain, signaling protei	6e-32
3ub2_A	146	TOLL/interleukin-1 receptor domain-containing ADA	3e-06
1t3g_A	159	X-linked interleukin-1 receptor accessory protein-	2e-04
2j67_A	178	TOLL like receptor 10; TIR, IL-1, TLR10, membrane,	3e-04

>3jrn_A AT1G72930 protein; TIR domain arabidopsis thaliana, plant protein; 2.00A {Arabidopsis thaliana} Length = 176

 Score =  119 bits (301), Expect = 2e-36
 Identities = 31/69 (44%), Positives = 47/69 (68%)

Query: 5  SSFSSCRYDVFLSFRGEDTRDNFLSHLVEALRQKKIKSFIDNEELSRGDGISPSLLKAIK 64
          SS ++ +YDVFLSFRG DTR NF+S L + L ++ I++F D++EL  G   SP L   I+
Sbjct: 2  SSHTATKYDVFLSFRGHDTRHNFISFLYKELVRRSIRTFKDDKELENGQRFSPELKSPIE 61

Query: 65 ESKISVIIF 73
           S+ +V++ 
Sbjct: 62 VSRFAVVVV 70

>3ozi_A L6TR; plant TIR domain, plant protein; 2.30A {Linum usitatissimum} Length = 204

 Score =  119 bits (300), Expect = 4e-36
 Identities = 37/71 (52%), Positives = 49/71 (69%)

Query: 3  SSSSFSSCRYDVFLSFRGEDTRDNFLSHLVEALRQKKIKSFIDNEELSRGDGISPSLLKA 62
           S SF S  Y+VFLSFRG DTR+ F   L ++LR+ KI +F D++EL +G  I P+LL+A
Sbjct: 27 PSGSFPSVEYEVFLSFRGPDTREQFTDFLYQSLRRYKIHTFRDDDELLKGKEIGPNLLRA 86

Query: 63 IKESKISVIIF 73
          I +SKI V I 
Sbjct: 87 IDQSKIYVPII 97

>3h16_A TIR protein; bacteria TIR domain, signaling protein; 2.50A {Paracoccus denitrificans PD1222} Length = 154

 Score =  107 bits (269), Expect = 6e-32
 Identities = 17/73 (23%), Positives = 36/73 (49%), Gaps = 1/73 (1%)

Query: 1  MASSSSFSSCRYDVFLSFRGEDTRDNFLSHLVEALRQKKIKSFIDNEELSRGDGISPSLL 60
            ++   S+  +D+F+S   ED + +F+  L   LR    + + D+  L  GD +  S+ 
Sbjct: 10 TTNADLTSAPPHDIFISHAWED-KADFVEALAHTLRAAGAEVWYDDFSLRPGDSLRRSID 68

Query: 61 KAIKESKISVIIF 73
          K +  S+  +++ 
Sbjct: 69 KGLGSSRFGIVVL 81

>3ub2_A TOLL/interleukin-1 receptor domain-containing ADA protein; TIR domain, TLRS adaptor, immune system; 2.40A {Homo sapiens} PDB: 3ub3_A 3ub4_A 2y92_A Length = 146

 Score = 40.8 bits (96), Expect = 3e-06
 Identities = 18/71 (25%), Positives = 28/71 (39%), Gaps = 4/71 (5%)

Query: 4  SSSFSSCRYDVFLSFRGEDTRDNFLSHLVEALRQKK--IKSFIDNEELSRGDGISPSLLK 61
           SS  S  YDV +    ED        LV  L      ++ F+   + + G  I   L +
Sbjct: 3  GSSRWSKDYDVCVCHSEEDLV--AAQDLVSYLEGSTASLRCFLQLRDATPGGAIVSELCQ 60

Query: 62 AIKESKISVII 72
          A+  S   V++
Sbjct: 61 ALSSSHCRVLL 71

>1t3g_A X-linked interleukin-1 receptor accessory protein-like 1; TIR, IL-1RAPL, IL-1R, TLR, membrane protein; 2.30A {Homo sapiens} Length = 159

 Score = 36.2 bits (83), Expect = 2e-04
 Identities = 14/73 (19%), Positives = 29/73 (39%), Gaps = 11/73 (15%)

Query: 12 YDVFLSFRGEDTR---------DNFLSHLVEALRQKK--IKSFIDNEELSRGDGISPSLL 60
          YD +LS+   D           + F   ++  + +K    K FI + +L         + 
Sbjct: 3  YDAYLSYTKVDPDQWNQETGEEERFALEILPDMLEKHYGYKLFIPDRDLIPTGTYIEDVA 62

Query: 61 KAIKESKISVIIF 73
          + + +SK  +I+ 
Sbjct: 63 RCVDQSKRLIIVM 75

>2j67_A TOLL like receptor 10; TIR, IL-1, TLR10, membrane, innate immunity, immune response, leucine-rich repeat, glycoprotein, transmembrane; 2.20A {Homo sapiens} PDB: 1fyv_A Length = 178

 Score = 35.7 bits (82), Expect = 3e-04
 Identities = 13/66 (19%), Positives = 26/66 (39%), Gaps = 3/66 (4%)

Query: 10 CRYDVFLSFRGEDTRDNFLSHLVEAL--RQKKIKSFIDNEELSRGDGISPSLLKAIKESK 67
           R+  F+S+   D      + L+  L      I   +       G  IS +++  I++S 
Sbjct: 34 VRFHAFISYSEHD-SLWVKNELIPNLEKEDGSILICLYESYFDPGKSISENIVSFIEKSY 92

Query: 68 ISVIIF 73
           S+ + 
Sbjct: 93 KSIFVL 98

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	73
3jrn_A	176	AT1G72930 protein; TIR domain arabidopsis thaliana	99.94
3ozi_A	204	L6TR; plant TIR domain, plant protein; 2.30A {Linu	99.94
3h16_A	154	TIR protein; bacteria TIR domain, signaling protei	99.85
1fyx_A	149	TOLL-like receptor 2; beta-alpha-beta fold, signal	99.74
3ub2_A	146	TOLL/interleukin-1 receptor domain-containing ADA	99.73
1t3g_A	159	X-linked interleukin-1 receptor accessory protein-	99.7
2j67_A	178	TOLL like receptor 10; TIR, IL-1, TLR10, membrane,	99.69
2js7_A	160	Myeloid differentiation primary response protein M	99.66
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.29
1eiw_A	111	Hypothetical protein MTH538; CHEY-like fold, flavo	92.06
2jug_A	78	TUBC protein; docking domain, dimer, nonribosomal	88.01
4fyk_A	152	Deoxyribonucleoside 5'-monophosphate N-glycosidas;	81.44
2yvq_A	143	Carbamoyl-phosphate synthase; conserved hypothetic	81.2

>3jrn_A AT1G72930 protein; TIR domain arabidopsis thaliana, plant protein; 2.00A {Arabidopsis thaliana}

Probab=99.94  E-value=5.9e-28  Score=160.96  Aligned_cols=68  Identities=44%  Similarity=0.795  Sum_probs=49.1

Q ss_pred             CCCCCcccEEeeceeccchhchHHHHHHHHhcCCcceeecccccCCCCCCcHHHHHHHhhcceEEEEC
Q 035104            6 SFSSCRYDVFLSFRGEDTRDNFLSHLVEALRQKKIKSFIDNEELSRGDGISPSLLKAIKESKISVIIF   73 (73)
Q Consensus         6 ~s~~~~ydVFiSfrg~D~r~~f~~~L~~~L~~~gi~~f~D~~~l~~G~~i~~~i~~aI~~Sri~IvVf   73 (73)
                      ||.+++|||||||||+|+|++|++|||++|+++||++|+|++++++|+.|.++|.+||++||++|+||
T Consensus         3 ss~~~~yDVFiSfrg~D~r~~Fv~~L~~~L~~~gi~~f~D~~~l~~G~~i~~~l~~aIe~Sri~IvV~   70 (176)
T 3jrn_A            3 SHTATKYDVFLSFRGHDTRHNFISFLYKELVRRSIRTFKDDKELENGQRFSPELKSPIEVSRFAVVVV   70 (176)
T ss_dssp             ----CCEEEEEEECHHHHTTTHHHHHHHHHHHTTCCEECCCC--------------CCTTEEEEEEEE
T ss_pred             CCCCCCCeEEEECcCcccChHHHHHHHHHHHHCCCEEEEEcccccCCCchHHHHHHHHHhCCEEEEEe
Confidence            34589999999999999999999999999999999999999999999999999999999999999996

>3ozi_A L6TR; plant TIR domain, plant protein; 2.30A {Linum usitatissimum}

Probab=99.94  E-value=1.5e-27  Score=162.30  Aligned_cols=65  Identities=52%  Similarity=0.852  Sum_probs=62.9

Q ss_pred             CCcccEEeeceeccchhchHHHHHHHHhcCCcceeecccccCCCCCCcHHHHHHHhhcceEEEEC
Q 035104            9 SCRYDVFLSFRGEDTRDNFLSHLVEALRQKKIKSFIDNEELSRGDGISPSLLKAIKESKISVIIF   73 (73)
Q Consensus         9 ~~~ydVFiSfrg~D~r~~f~~~L~~~L~~~gi~~f~D~~~l~~G~~i~~~i~~aI~~Sri~IvVf   73 (73)
                      +++|||||||||+|+|++|++|||++|+++||++|+|++++++|+.|.++|.+||++||++||||
T Consensus        33 ~~~yDVFISfrg~D~r~~Fv~~L~~aL~~~GI~~f~D~~el~~G~~I~~~l~~aIe~Sri~IvV~   97 (204)
T 3ozi_A           33 SVEYEVFLSFRGPDTREQFTDFLYQSLRRYKIHTFRDDDELLKGKEIGPNLLRAIDQSKIYVPII   97 (204)
T ss_dssp             -CCCCEEEEECHHHHTTTHHHHHHHHHHHTTCCEEEEETTTCCGGGTTTTHHHHHHHCSEEEEEE
T ss_pred             CcCCeEEEeccccCCCHHHHHHHHHHHHHCCCcEEEeCCccCCCCchHHHHHHHHHhCcEeeEEE
Confidence            69999999999999999999999999999999999999999999999999999999999999996

>3h16_A TIR protein; bacteria TIR domain, signaling protein; 2.50A {Paracoccus denitrificans PD1222}

Probab=99.85  E-value=3.9e-22  Score=128.31  Aligned_cols=64  Identities=25%  Similarity=0.465  Sum_probs=61.2

Q ss_pred             CCcccEEeeceeccchhchHHHHHHHHhcCCcceeecccccCCCCCCcHHHHHHHhhcceEEEEC
Q 035104            9 SCRYDVFLSFRGEDTRDNFLSHLVEALRQKKIKSFIDNEELSRGDGISPSLLKAIKESKISVIIF   73 (73)
Q Consensus         9 ~~~ydVFiSfrg~D~r~~f~~~L~~~L~~~gi~~f~D~~~l~~G~~i~~~i~~aI~~Sri~IvVf   73 (73)
                      .++|||||||+++| ++.|+.+|+.+|+++|+++|+|++++.+|+.|.++|.+||++|++.|+||
T Consensus        18 ~~~~dvFISy~~~D-~~~~~~~L~~~L~~~gi~v~~D~~~l~~G~~~~~~i~~ai~~s~~~i~v~   81 (154)
T 3h16_A           18 APPHDIFISHAWED-KADFVEALAHTLRAAGAEVWYDDFSLRPGDSLRRSIDKGLGSSRFGIVVL   81 (154)
T ss_dssp             CCSEEEEEEEEGGG-TTTTHHHHHHHHHHHTCCEECGGGEECTTCCHHHHHHHHHTSEEEEEEEE
T ss_pred             CCCceEEEECcccC-hHHHHHHHHHHHHHCCCcEEEcHHhCCCccHHHHHHHHHHHhCcEEEEEe
Confidence            58999999999999 66899999999999999999999999999999999999999999999985

>1fyx_A TOLL-like receptor 2; beta-alpha-beta fold, signaling protein; 2.80A {Homo sapiens} SCOP: c.23.2.1 PDB: 1fyw_A 1o77_A

Probab=99.74  E-value=1.4e-18  Score=111.70  Aligned_cols=63  Identities=21%  Similarity=0.469  Sum_probs=59.3

Q ss_pred             CCcccEEeeceeccchhchHHH-HHHHHhcC--CcceeecccccCCCCCCcHHHHHHHhhcceEEEEC
Q 035104            9 SCRYDVFLSFRGEDTRDNFLSH-LVEALRQK--KIKSFIDNEELSRGDGISPSLLKAIKESKISVIIF   73 (73)
Q Consensus         9 ~~~ydVFiSfrg~D~r~~f~~~-L~~~L~~~--gi~~f~D~~~l~~G~~i~~~i~~aI~~Sri~IvVf   73 (73)
                      .+.|||||||+++|+  .|+.+ |+.+|+++  |+++|+|++++.+|+.+.++|.+||++||..|+|+
T Consensus         3 ~~~yDvFiSy~~~D~--~~v~~~L~~~Le~~~~g~~~~~~~rd~~~G~~~~~~i~~~i~~Sr~~I~Vl   68 (149)
T 1fyx_A            3 NIXYDAFVSYSERDA--YWVENLMVQELENFNPPFKLXLHKRDFIHGKWIIDNIIDSIEKSHKTVFVL   68 (149)
T ss_dssp             SCCEEEEEECCGGGH--HHHHTHHHHHHTTSSSCCCEEEHHHHCCSSSCHHHHHHHHHHHEEEEEEEE
T ss_pred             CccceEEEECCcccH--HHHHHHHHHHHhcCCCCeEEeeccccCCCchhHHHHHHHHHHHcCEEEEEe
Confidence            578999999999996  69996 99999986  99999999999999999999999999999999986

>3ub2_A TOLL/interleukin-1 receptor domain-containing ADA protein; TIR domain, TLRS adaptor, immune system; 2.40A {Homo sapiens} PDB: 3ub3_A 3ub4_A 2y92_A

Probab=99.73  E-value=2.7e-19  Score=115.14  Aligned_cols=63  Identities=25%  Similarity=0.389  Sum_probs=44.5

Q ss_pred             CCcccEEeeceeccchhchHHHHHHHHhc--CCcceeecccccCCCCCCcHHHHHHHhhcceEEEEC
Q 035104            9 SCRYDVFLSFRGEDTRDNFLSHLVEALRQ--KKIKSFIDNEELSRGDGISPSLLKAIKESKISVIIF   73 (73)
Q Consensus         9 ~~~ydVFiSfrg~D~r~~f~~~L~~~L~~--~gi~~f~D~~~l~~G~~i~~~i~~aI~~Sri~IvVf   73 (73)
                      ...|||||||+++|++  |+.+|+.+|++  .|+++|+|++++.+|+.|.++|.+||++||..|+||
T Consensus         8 ~k~YDvFISy~~~D~~--~v~~L~~~Le~~~~g~~~~l~~rD~~~G~~i~~~i~~aI~~Sr~~I~Vl   72 (146)
T 3ub2_A            8 SKDYDVCVCHSEEDLV--AAQDLVSYLEGSTASLRCFLQLRDATPGGAIVSELCQALSSSHCRVLLI   72 (146)
T ss_dssp             SSSEEEEEECCGGGHH--HHHHHHHHHHC------------------CCCEEECCTTCCEEEEEEEE
T ss_pred             CCcceEEEeCChhhHH--HHHHHHHHHhCcCCCeEEEEECccccccccHHHHHHHHHHhCCEEEEEE
Confidence            7899999999999976  89999999998  599999999999999999999999999999999986

>1t3g_A X-linked interleukin-1 receptor accessory protein-like 1; TIR, IL-1RAPL, IL-1R, TLR, membrane protein; 2.30A {Homo sapiens}

Probab=99.70  E-value=8.4e-18  Score=109.30  Aligned_cols=64  Identities=22%  Similarity=0.393  Sum_probs=58.3

Q ss_pred             CcccEEeeceeccc---------hhchHHHHHH-HHh-cCCcceeecccccCCCCCCcHHHHHHHhhcceEEEEC
Q 035104           10 CRYDVFLSFRGEDT---------RDNFLSHLVE-ALR-QKKIKSFIDNEELSRGDGISPSLLKAIKESKISVIIF   73 (73)
Q Consensus        10 ~~ydVFiSfrg~D~---------r~~f~~~L~~-~L~-~~gi~~f~D~~~l~~G~~i~~~i~~aI~~Sri~IvVf   73 (73)
                      ..|||||||+++|+         ++.|+.+|+. .|+ +.|+++|+|++++.+|+.|.++|.+||++||..|+|+
T Consensus         1 k~yDaFISy~~~D~~wv~~~~~~~~~fv~~ll~~~LE~~~g~~l~~~~rD~~~G~~i~~~i~~~I~~Sr~~IvVl   75 (159)
T 1t3g_A            1 KDYDAYLSYTKVDPDQWNQETGEEERFALEILPDMLEKHYGYKLFIPDRDLIPTGTYIEDVARCVDQSKRLIIVM   75 (159)
T ss_dssp             CCBSEEEECCCCC-------CCSHHHHHHTHHHHHHHHTSCCCEECHHHHCCCCTTHHHHHHHHHHTBSEEEEEE
T ss_pred             CCceEEEeCccccchhhhccchhhHHHHHHHHHHHHcCCCCeEEEEEcccccCccchHHHHHHHHHHcCEEEEEE
Confidence            36999999999997         5789999886 599 7999999999999999999999999999999999985

>2j67_A TOLL like receptor 10; TIR, IL-1, TLR10, membrane, innate immunity, immune response, leucine-rich repeat, glycoprotein, transmembrane; 2.20A {Homo sapiens} PDB: 1fyv_A

Probab=99.69  E-value=1.4e-17  Score=110.21  Aligned_cols=63  Identities=21%  Similarity=0.426  Sum_probs=58.6

Q ss_pred             CCcccEEeeceeccchhchHHH-HHHHHhc--CCcceeecccccCCCCCCcHHHHHHHhhcceEEEEC
Q 035104            9 SCRYDVFLSFRGEDTRDNFLSH-LVEALRQ--KKIKSFIDNEELSRGDGISPSLLKAIKESKISVIIF   73 (73)
Q Consensus         9 ~~~ydVFiSfrg~D~r~~f~~~-L~~~L~~--~gi~~f~D~~~l~~G~~i~~~i~~aI~~Sri~IvVf   73 (73)
                      .+.|||||||+++|+  .|+.+ |+.+|++  +|+++|+|++++.+|+.|.++|.+||++||..|+|+
T Consensus        33 ~~~yDvFISys~~D~--~fv~~~L~~~LE~~~~g~~~~l~~rD~~~G~~i~~~i~~aI~~Sr~~IvVl   98 (178)
T 2j67_A           33 NVRFHAFISYSEHDS--LWVKNELIPNLEKEDGSILICLYESYFDPGKSISENIVSFIEKSYKSIFVL   98 (178)
T ss_dssp             SCCEEEEEECCGGGH--HHHHHTHHHHHTTCC-CCCEEEHHHHCCTTSCHHHHHHHHHHTEEEEEEEE
T ss_pred             CccceEEEECCCCCH--HHHHHHHHHHHhcccCCeEEEEecccCCCCccHHHHHHHHHHhCCEEEEEe
Confidence            688999999999995  69975 9999998  899999999999999999999999999999999986

>2js7_A Myeloid differentiation primary response protein MYD88; MYD88_human, TIR domain, TOLL like receptor adaptor domain, innate immune signaling; NMR {Homo sapiens} PDB: 2z5v_A

Probab=99.66  E-value=3.6e-17  Score=106.38  Aligned_cols=63  Identities=17%  Similarity=0.399  Sum_probs=58.9

Q ss_pred             CCcccEEeeceeccchhchHHHHHHHHhcC--CcceeecccccCCCCCCcHHHHHHHh-hcceEEEEC
Q 035104            9 SCRYDVFLSFRGEDTRDNFLSHLVEALRQK--KIKSFIDNEELSRGDGISPSLLKAIK-ESKISVIIF   73 (73)
Q Consensus         9 ~~~ydVFiSfrg~D~r~~f~~~L~~~L~~~--gi~~f~D~~~l~~G~~i~~~i~~aI~-~Sri~IvVf   73 (73)
                      .+.|||||||+++|  ..|+.+|+.+|+++  |+++|+|++++.+|+.|.++|.++|+ .||..|+|+
T Consensus        14 ~~~yDvFISys~~D--~~fv~~L~~~Le~~~~g~~~~~~~rd~~~G~~i~~~i~~~I~~~Sr~~IvVl   79 (160)
T 2js7_A           14 PERFDAFICYCPSD--IQFVQEMIRQLEQTNYRLKLCVSDRDVLPGTCVWSIASELIEKRCRRMVVVV   79 (160)
T ss_dssp             TTCEEEEEECCGGG--HHHHHHHHHHHHTSSSCCCCEESCCSSSSSCSCCCCCGGGHHHHEEEEEEEC
T ss_pred             CcceEEEEEccccc--HHHHHHHHHHHhcCCCceEEEEeCCCCCCCCcHHHHHHHHHHHhCCEEEEEE
Confidence            68899999999999  47999999999985  69999999999999999999999999 699999996

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.29  E-value=3.2e-12  Score=97.52  Aligned_cols=63  Identities=19%  Similarity=0.414  Sum_probs=58.3

Q ss_pred             CCcccEEeeceeccchhchH-HHHHHHHhc-----CCcceeecccccCCCCCCcHHHHHHHhhcceEEEEC
Q 035104            9 SCRYDVFLSFRGEDTRDNFL-SHLVEALRQ-----KKIKSFIDNEELSRGDGISPSLLKAIKESKISVIIF   73 (73)
Q Consensus         9 ~~~ydVFiSfrg~D~r~~f~-~~L~~~L~~-----~gi~~f~D~~~l~~G~~i~~~i~~aI~~Sri~IvVf   73 (73)
                      .+.|||||||+++|.  .|| .+|...|++     .|+++|++++++.+|+.|.++|.+||++||..|+|+
T Consensus       668 ~~~yd~fisy~~~d~--~~v~~~l~~~Le~~~~~~~~~~~~~~~rd~~~G~~~~~~i~~~i~~sr~~i~vl  736 (844)
T 3j0a_A          668 MYKYDAYLCFSSKDF--TWVQNALLKHLDTQYSDQNRFNLCFEERDFVPGENRIANIQDAIWNSRKIVCLV  736 (844)
T ss_dssp             CCCCSEEEECCSTTH--HHHHHTHHHHHHSTTTTTTCSCEECSSSSCCSSSCHHHHHHHHHHHSSEEEEEE
T ss_pred             ceeccEEEEeeCCcH--HHHHHHHHHHHhhccccCCceEEEEEccccCCCchHHHHHHHHHHHhCeEEEEe
Confidence            579999999999995  588 779999985     689999999999999999999999999999999985

>1eiw_A Hypothetical protein MTH538; CHEY-like fold, flavodoxin-like fold, (A/B)5 doubly wound fold, parallel beta sheet; NMR {Methanothermobacterthermautotrophicus} SCOP: c.23.3.1

Probab=92.06  E-value=0.074  Score=32.41  Aligned_cols=27  Identities=15%  Similarity=0.281  Sum_probs=17.6

Q ss_pred             CcccEEeeceeccchhchHHHHHHHHhcCCc
Q 035104           10 CRYDVFLSFRGEDTRDNFLSHLVEALRQKKI   40 (73)
Q Consensus        10 ~~ydVFiSfrg~D~r~~f~~~L~~~L~~~gi   40 (73)
                      ..|.|||||..+|.++.|...|    .+.|+
T Consensus         3 ~~~~lFISh~~~d~~~~L~~~l----~~~~f   29 (111)
T 1eiw_A            3 AEIRLYITEGEVEDYRVFLERL----EQSGL   29 (111)
T ss_dssp             CCEEEEECCCCSHHHHHHHHHH----HHHCS
T ss_pred             ceEEEEEecccHhHHHHHHHHH----hCCCC
Confidence            3689999999999333333333    35566

>2jug_A TUBC protein; docking domain, dimer, nonribosomal peptide synthetase, tubulysin, ligase, phosphopantetheine, biosynthetic protein; NMR {Angiococcus disciformis}

Probab=88.01  E-value=0.57  Score=26.24  Aligned_cols=40  Identities=13%  Similarity=0.273  Sum_probs=30.9

Q ss_pred             HHHHHHHHhcCCcceeecccccC---CCCCCcHHHHHHHhhcc
Q 035104           28 LSHLVEALRQKKIKSFIDNEELS---RGDGISPSLLKAIKESK   67 (73)
Q Consensus        28 ~~~L~~~L~~~gi~~f~D~~~l~---~G~~i~~~i~~aI~~Sr   67 (73)
                      +..|...|.++||..|.|.+.+.   +-..+++++...+.+.+
T Consensus         7 ~~~ll~~l~~~gi~l~~eg~kLr~~ap~g~l~~~l~~~l~~~K   49 (78)
T 2jug_A            7 AGALLAHAASLGVRLWVEGERLRFQAPPGVMTPELQSRLGGAR   49 (78)
T ss_dssp             HHHHHHHHHHHTCEEEEETTEEEEECCTTTTCHHHHHHHTTCH
T ss_pred             HHHHHHHHHHcCCEEEEECCEeeeecCccccCHHHHHHHHHHH
Confidence            34677899999999999987774   33468888888777654

>4fyk_A Deoxyribonucleoside 5'-monophosphate N-glycosidas; hydrolas; HET: SRA; 1.79A {Rattus norvegicus} PDB: 4fyh_A* 4fyi_A* 2klh_A*

Probab=81.44  E-value=3.4  Score=26.26  Aligned_cols=60  Identities=22%  Similarity=0.408  Sum_probs=36.3

Q ss_pred             cEEee--ceeccchhchHHHHHHHHhcCCcceeec---cccc-CCCCC-------CcHHHHHHHhhcceEEEEC
Q 035104           13 DVFLS--FRGEDTRDNFLSHLVEALRQKKIKSFID---NEEL-SRGDG-------ISPSLLKAIKESKISVIIF   73 (73)
Q Consensus        13 dVFiS--frg~D~r~~f~~~L~~~L~~~gi~~f~D---~~~l-~~G~~-------i~~~i~~aI~~Sri~IvVf   73 (73)
                      -|||+  +++.+....+...+.+.|++.| .|+-.   +.++ ++|+.       |...-+++|+.|.+.|+++
T Consensus         4 kIYlAGP~f~~~e~~~~~~~i~~~L~~~G-~Vl~~hv~~~~l~~~g~~~~~~~~~i~~~d~~~i~~aD~vvA~l   76 (152)
T 4fyk_A            4 SVYFCGSIRGGREDQALYARIVSRLRRYG-KVLTEHVADAELEPLGEEAAGGDQFIHEQNLNWLQQADVVVAEV   76 (152)
T ss_dssp             EEEEECCSTTCCTTHHHHHHHHHHHTTTS-EECCCC-------------CCCHHHHHHHHHHHHHHCSEEEEEC
T ss_pred             eEEEECCCCCcHHHHHHHHHHHHHHHHcC-cccccccCchhhhhccccccCCHHHHHHHHHHHHHHCCEEEEeC
Confidence            46665  4453333467799999999999 67542   2122 12322       4555578999999988764

>2yvq_A Carbamoyl-phosphate synthase; conserved hypothetical protein, structural genomics, NPPSFA; 1.98A {Homo sapiens}

Probab=81.20  E-value=2.9  Score=25.74  Aligned_cols=58  Identities=16%  Similarity=0.227  Sum_probs=37.2

Q ss_pred             EEeeceeccchhchHHHHHHHHhcCCcceeec-------------ccccCC---C-C-CCcHHHHHHHhhcceEEEEC
Q 035104           14 VFLSFRGEDTRDNFLSHLVEALRQKKIKSFID-------------NEELSR---G-D-GISPSLLKAIKESKISVIIF   73 (73)
Q Consensus        14 VFiSfrg~D~r~~f~~~L~~~L~~~gi~~f~D-------------~~~l~~---G-~-~i~~~i~~aI~~Sri~IvVf   73 (73)
                      ||||.+..|..  -+-.+.+.|.+.|++.+--             -+.+.+   | + .-.|.|...|++-+|.+||+
T Consensus        27 vliSv~d~dK~--~l~~~a~~l~~lGf~i~AT~GTa~~L~~~Gi~v~~v~k~~egg~~~~~~~i~d~i~~g~i~lVIn  102 (143)
T 2yvq_A           27 ILIGIQQSFRP--RFLGVAEQLHNEGFKLFATEATSDWLNANNVPATPVAWPSQEGQNPSLSSIRKLIRDGSIDLVIN  102 (143)
T ss_dssp             EEEECCGGGHH--HHHHHHHHHHTTTCEEEEEHHHHHHHHHTTCCCEEECCGGGC-----CBCHHHHHHTTSCCEEEE
T ss_pred             EEEEecccchH--HHHHHHHHHHHCCCEEEECchHHHHHHHcCCeEEEEEeccCCCcccccccHHHHHHCCCceEEEE
Confidence            99999887643  3456788888888887721             111111   2 2 01157888999999888874

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	73
d1fyva_	161	c.23.2.1 (A:) Toll-like receptor 1, TLR1 {Human (H	4e-12
d1fyxa_	149	c.23.2.1 (A:) Toll-like receptor 2, TLR2 {Human (H	3e-10

>d1fyva_ c.23.2.1 (A:) Toll-like receptor 1, TLR1 {Human (Homo sapiens) [TaxId: 9606]} Length = 161

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Toll/Interleukin receptor TIR domain
family: Toll/Interleukin receptor TIR domain
domain: Toll-like receptor 1, TLR1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.5 bits (133), Expect = 4e-12
 Identities = 11/63 (17%), Positives = 30/63 (47%), Gaps = 1/63 (1%)

Query: 11 RYDVFLSFRGEDTRDNFLSHLVEALRQKKIKSFIDNEELSRGDGISPSLLKAIKESKISV 70
          ++  F+S+ G D+     + L+  L ++ ++  +       G  I  +++  I++S  S+
Sbjct: 12 QFHAFISYSGHDSF-WVKNELLPNLEKEGMQICLHERNFVPGKSIVENIITCIEKSYKSI 70

Query: 71 IIF 73
           + 
Sbjct: 71 FVL 73

>d1fyxa_ c.23.2.1 (A:) Toll-like receptor 2, TLR2 {Human (Homo sapiens) [TaxId: 9606]} Length = 149

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Toll/Interleukin receptor TIR domain
family: Toll/Interleukin receptor TIR domain
domain: Toll-like receptor 2, TLR2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.5 bits (120), Expect = 3e-10
 Identities = 13/66 (19%), Positives = 28/66 (42%), Gaps = 3/66 (4%)

Query: 10 CRYDVFLSFRGEDTRDNFLSHLVEAL--RQKKIKSFIDNEELSRGDGISPSLLKAIKESK 67
            YD F+S+   D      + +V+ L       K  +   +   G  I  +++ +I++S 
Sbjct: 4  ICYDAFVSYSERD-AYWVENLMVQELENFNPPFKLCLHKRDFIHGKWIIDNIIDSIEKSH 62

Query: 68 ISVIIF 73
           +V + 
Sbjct: 63 KTVFVL 68

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	73
d1fyva_	161	Toll-like receptor 1, TLR1 {Human (Homo sapiens) [	99.61
d1fyxa_	149	Toll-like receptor 2, TLR2 {Human (Homo sapiens) [	99.51
d1wu7a1	97	Histidyl-tRNA synthetase (HisRS), C-terminal domai	95.73
d1kmma1	99	Histidyl-tRNA synthetase (HisRS), C-terminal domai	93.03
d1qe0a1	95	Histidyl-tRNA synthetase (HisRS), C-terminal domai	91.85
d1nyra1	113	Threonyl-tRNA synthetase (ThrRS), C-terminal domai	91.46
d1atia1	111	Glycyl-tRNA synthetase (GlyRS), C-terminal domain	91.37
d1qf6a1	110	Threonyl-tRNA synthetase (ThrRS), C-terminal domai	91.34
d1nj1a1	127	Prolyl-tRNA synthetase (ProRS) domain {Arhaeon (Me	90.55
d1dlja3	108	UDP-glucose dehydrogenase (UDPGDH), C-terminal (UD	88.93
d1hc7a1	127	Prolyl-tRNA synthetase (ProRS) domain {Thermus the	87.43
d2f62a1	152	Nucleoside 2-deoxyribosyltransferase {Trypanosoma	85.27
d1h4vb1	96	Histidyl-tRNA synthetase (HisRS), C-terminal domai	82.67
d1g5ha1	127	The aaRS-like accessory subunit of mitochondrial p	81.28
d1a9xa2	138	Carbamoyl phosphate synthetase, large subunit allo	80.92

>d1fyva_ c.23.2.1 (A:) Toll-like receptor 1, TLR1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Toll/Interleukin receptor TIR domain
family: Toll/Interleukin receptor TIR domain
domain: Toll-like receptor 1, TLR1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.61  E-value=3.6e-16  Score=99.55  Aligned_cols=63  Identities=17%  Similarity=0.482  Sum_probs=58.5

Q ss_pred             CCcccEEeeceeccchhchH-HHHHHHHhcCCcceeecccccCCCCCCcHHHHHHHhhcceEEEEC
Q 035104            9 SCRYDVFLSFRGEDTRDNFL-SHLVEALRQKKIKSFIDNEELSRGDGISPSLLKAIKESKISVIIF   73 (73)
Q Consensus         9 ~~~ydVFiSfrg~D~r~~f~-~~L~~~L~~~gi~~f~D~~~l~~G~~i~~~i~~aI~~Sri~IvVf   73 (73)
                      +.+|||||||+++|.  .|+ ..|...|+++|+++|+|++++.+|+.+..+|.+||++|+..|+|+
T Consensus        10 ~~~yDvFisys~~D~--~~v~~~L~~~Le~~g~~v~~d~~d~~~G~~~~~~i~~~i~~s~~~i~vl   73 (161)
T d1fyva_          10 NLQFHAFISYSGHDS--FWVKNELLPNLEKEGMQICLHERNFVPGKSIVENIITCIEKSYKSIFVL   73 (161)
T ss_dssp             CCCEEEEEECCGGGH--HHHHHTHHHHHHTTTCCEECTTTTCCTTSCHHHHHHHHHHHEEEEEEEE
T ss_pred             CCeeEEEEecChhHH--HHHHHHHHHHHHhCCCcceEeccccccccccHHHHHHHHHhCCEEEEEe
Confidence            679999999999994  487 579999999999999999999999999999999999999999884

>d1fyxa_ c.23.2.1 (A:) Toll-like receptor 2, TLR2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Toll/Interleukin receptor TIR domain
family: Toll/Interleukin receptor TIR domain
domain: Toll-like receptor 2, TLR2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.51  E-value=6.3e-15  Score=92.52  Aligned_cols=64  Identities=20%  Similarity=0.442  Sum_probs=57.1

Q ss_pred             CCCcccEEeeceeccchhchH-HHHHHHHhc--CCcceeecccccCCCCCCcHHHHHHHhhcceEEEEC
Q 035104            8 SSCRYDVFLSFRGEDTRDNFL-SHLVEALRQ--KKIKSFIDNEELSRGDGISPSLLKAIKESKISVIIF   73 (73)
Q Consensus         8 ~~~~ydVFiSfrg~D~r~~f~-~~L~~~L~~--~gi~~f~D~~~l~~G~~i~~~i~~aI~~Sri~IvVf   73 (73)
                      .+..|||||||+++|  +.|+ .+|...|++  .|+++|+|++++.+|+.+..+|.++|++|+..|+|+
T Consensus         2 ~~~~YDvFiSys~~D--~~~V~~~l~~~LE~~~~g~~~~~~~rd~~~G~~~~~~i~~~i~~S~~~i~vl   68 (149)
T d1fyxa_           2 RNICYDAFVSYSERD--AYWVENLMVQELENFNPPFKLCLHKRDFIHGKWIIDNIIDSIEKSHKTVFVL   68 (149)
T ss_dssp             CSCCEEEEEECCGGG--HHHHHTHHHHHHTTSSSCCCEEEHHHHCCSSSCHHHHHHHHHHHEEEEEEEE
T ss_pred             CCCEEEEEEECchhh--HHHHHHHHHHHHHhcCCCceEEEecccccccchHHHHHHHHHHhCCEEEEEE
Confidence            467899999999999  3577 568999976  499999999999999999999999999999999884

>d1wu7a1 c.51.1.1 (A:330-426) Histidyl-tRNA synthetase (HisRS), C-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a/b)
fold: Anticodon-binding domain-like
superfamily: Class II aaRS ABD-related
family: Anticodon-binding domain of Class II aaRS
domain: Histidyl-tRNA synthetase (HisRS), C-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=95.73  E-value=0.023  Score=31.68  Aligned_cols=57  Identities=18%  Similarity=0.282  Sum_probs=41.7

Q ss_pred             CcccEEeeceeccchhchHHHHHHHHhcCCcceeecccccCCCCCCcHHHHHHHh-hcceEEE
Q 035104           10 CRYDVFLSFRGEDTRDNFLSHLVEALRQKKIKSFIDNEELSRGDGISPSLLKAIK-ESKISVI   71 (73)
Q Consensus        10 ~~ydVFiSfrg~D~r~~f~~~L~~~L~~~gi~~f~D~~~l~~G~~i~~~i~~aI~-~Sri~Iv   71 (73)
                      .+.+|||..-|++.. ..+-.|+..|+++||++.+|..    +.++...+-.|-+ +.+..|+
T Consensus         2 ~~~~V~i~~~g~~~~-~~~~~l~~~Lr~~gi~v~~d~~----~~~l~kq~~~A~~~~~~~~ii   59 (97)
T d1wu7a1           2 EKKSVYICRVGKINS-SIMNEYSRKLRERGMNVTVEIM----ERGLSAQLKYASAIGADFAVI   59 (97)
T ss_dssp             SSCEEEEEEESSCCH-HHHHHHHHHHHTTTCEEEECCS----CCCHHHHHHHHHHTTCSEEEE
T ss_pred             CCceEEEEEeCHHHH-HHHHHHHHHHHHCCCEEEEECC----CCcHHHHHHHHHhcCCCeEEe
Confidence            357999999999876 6899999999999999999874    3456555544433 2444444

>d1kmma1 c.51.1.1 (A:326-424) Histidyl-tRNA synthetase (HisRS), C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Anticodon-binding domain-like
superfamily: Class II aaRS ABD-related
family: Anticodon-binding domain of Class II aaRS
domain: Histidyl-tRNA synthetase (HisRS), C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=93.03  E-value=0.12  Score=28.55  Aligned_cols=57  Identities=25%  Similarity=0.405  Sum_probs=40.6

Q ss_pred             CcccEEeeceeccchhchHHHHHHHHhcC--CcceeecccccCCCCCCcHHHHHHHh-hcceEEE
Q 035104           10 CRYDVFLSFRGEDTRDNFLSHLVEALRQK--KIKSFIDNEELSRGDGISPSLLKAIK-ESKISVI   71 (73)
Q Consensus        10 ~~ydVFiSfrg~D~r~~f~~~L~~~L~~~--gi~~f~D~~~l~~G~~i~~~i~~aI~-~Sri~Iv   71 (73)
                      +..|||+-.-|++.. ..+-.|...|+++  |+++.+|..    +.++...+-.|-+ +.+..|+
T Consensus         2 p~vdv~vi~~~~~~~-~~a~~la~~LR~~~~gi~v~~~~~----~~~l~kq~k~A~~~~~~~~ii   61 (99)
T d1kmma1           2 PVVDIYLVASGADTQ-SAAMALAERLRDELPGVKLMTNHG----GGNFKKQFARADKWGARVAVV   61 (99)
T ss_dssp             CSCSEEEECCSTTHH-HHHHHHHHHHHHHSTTCCEEECCS----CCCHHHHHHHHHHHTCSEEEE
T ss_pred             CCCEEEEEECCHHHH-HHHHHHHHHHHhcCCCeEEEEeCC----CCCHHHHHHHHHHhCCChhhh
Confidence            467999988888765 6888999999887  999998864    3456555555443 3444444

>d1qe0a1 c.51.1.1 (A:326-420) Histidyl-tRNA synthetase (HisRS), C-terminal domain {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a/b)
fold: Anticodon-binding domain-like
superfamily: Class II aaRS ABD-related
family: Anticodon-binding domain of Class II aaRS
domain: Histidyl-tRNA synthetase (HisRS), C-terminal domain
species: Staphylococcus aureus [TaxId: 1280]

Probab=91.85  E-value=0.22  Score=27.06  Aligned_cols=57  Identities=21%  Similarity=0.321  Sum_probs=39.5

Q ss_pred             CcccEEeeceeccchhchHHHHHHHHhcCCcceeecccccCCCCCCcHHHHHHHhh-cceEEE
Q 035104           10 CRYDVFLSFRGEDTRDNFLSHLVEALRQKKIKSFIDNEELSRGDGISPSLLKAIKE-SKISVI   71 (73)
Q Consensus        10 ~~ydVFiSfrg~D~r~~f~~~L~~~L~~~gi~~f~D~~~l~~G~~i~~~i~~aI~~-Sri~Iv   71 (73)
                      ...||||.--+++.. ..+-.|...|++.|+++.+|..    +.++...+-.|=+. .+..|+
T Consensus         3 ~~~dv~ii~~~~~~~-~~a~~i~~~Lr~~gi~v~~d~~----~~~l~kq~~~A~~~~~~~~ii   60 (95)
T d1qe0a1           3 ENLDLFIVTMGDQAD-RYAVKLLNHLRHNGIKADKDYL----QRKIKGQMKQADRLGAKFTIV   60 (95)
T ss_dssp             CCCSEEEEECHHHHH-HHHHHHHHHHHTTTCCEEECCS----CCCHHHHHHHHHHTTCSEEEE
T ss_pred             CCCeEEEEEeCHHHH-HHHHHHHHHHHHCCCcEEecCC----CCCHHHHHHHHHhcCCCEEEE
Confidence            457999987777654 6889999999999999998864    34555455444332 344444

>d1nyra1 c.51.1.1 (A:533-645) Threonyl-tRNA synthetase (ThrRS), C-terminal domain {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a/b)
fold: Anticodon-binding domain-like
superfamily: Class II aaRS ABD-related
family: Anticodon-binding domain of Class II aaRS
domain: Threonyl-tRNA synthetase (ThrRS), C-terminal domain
species: Staphylococcus aureus [TaxId: 1280]

Probab=91.46  E-value=0.066  Score=30.43  Aligned_cols=42  Identities=17%  Similarity=0.222  Sum_probs=28.4

Q ss_pred             ccEEeeceeccchhchHHHHHHHHhcCCcceeecccccCCCC
Q 035104           12 YDVFLSFRGEDTRDNFLSHLVEALRQKKIKSFIDNEELSRGD   53 (73)
Q Consensus        12 ydVFiSfrg~D~r~~f~~~L~~~L~~~gi~~f~D~~~l~~G~   53 (73)
                      ++|-|---+.|....++..|+..|++.||++-+|+++-..|.
T Consensus        14 ~qv~iipi~~~~~~~~a~~l~~~Lr~~gi~v~~D~~~~~~g~   55 (113)
T d1nyra1          14 KQVQIIPVNVDLHYDYARQLQDELKSQGVRVSIDDRNEKMGY   55 (113)
T ss_dssp             SCEEEEESSHHHHHHHHHHHHHHHHTTTCCEEECCSSCCHHH
T ss_pred             ceEEEEEeCcHHHhhhHHHHHHHhhhhccceeecccccccch
Confidence            345333224444346899999999999999999986433333

>d1atia1 c.51.1.1 (A:395-505) Glycyl-tRNA synthetase (GlyRS), C-terminal domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: Anticodon-binding domain-like
superfamily: Class II aaRS ABD-related
family: Anticodon-binding domain of Class II aaRS
domain: Glycyl-tRNA synthetase (GlyRS), C-terminal domain
species: Thermus thermophilus [TaxId: 274]

Probab=91.37  E-value=0.016  Score=33.32  Aligned_cols=35  Identities=9%  Similarity=0.081  Sum_probs=28.2

Q ss_pred             cchhchHHHHHHHHhcCCcceeecccccCCCCCCc
Q 035104           22 DTRDNFLSHLVEALRQKKIKSFIDNEELSRGDGIS   56 (73)
Q Consensus        22 D~r~~f~~~L~~~L~~~gi~~f~D~~~l~~G~~i~   56 (73)
                      |.-..++..||..|...|+.+.+|+++...|..+.
T Consensus        17 ~~~~~~a~~l~~~L~~~gi~v~~Ddr~~~~G~K~~   51 (111)
T d1atia1          17 PEITEYAKRLKARLLALGLGRVLYEDTGNIGKAYR   51 (111)
T ss_dssp             HHHHHHHHHHHHHHHTTCSSCEEECCCSCHHHHHH
T ss_pred             HHHHHHHHHHHhhhccccceeEeecCCCCHHHHHH
Confidence            33457899999999999999999987666666554

>d1qf6a1 c.51.1.1 (A:533-642) Threonyl-tRNA synthetase (ThrRS), C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Anticodon-binding domain-like
superfamily: Class II aaRS ABD-related
family: Anticodon-binding domain of Class II aaRS
domain: Threonyl-tRNA synthetase (ThrRS), C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=91.34  E-value=0.066  Score=30.31  Aligned_cols=56  Identities=11%  Similarity=0.159  Sum_probs=36.1

Q ss_pred             ccEEeeceeccchhchHHHHHHHHhcCCcceeecccccCCCCCCcHHHHHHHh-hcceEEEE
Q 035104           12 YDVFLSFRGEDTRDNFLSHLVEALRQKKIKSFIDNEELSRGDGISPSLLKAIK-ESKISVII   72 (73)
Q Consensus        12 ydVFiSfrg~D~r~~f~~~L~~~L~~~gi~~f~D~~~l~~G~~i~~~i~~aI~-~Sri~IvV   72 (73)
                      ++|.|-==+++ ...++..|+..|+..||++.+|+++    ..+...+-.|-. +..+.|+|
T Consensus         8 ~Qv~iipi~~~-~~~~a~~i~~~Lr~~gi~v~~d~~~----~~l~~ki~~a~~~g~p~~iii   64 (110)
T d1qf6a1           8 VQVVIMNITDS-QSEYVNELTQKLSNAGIRVKADLRN----EKIGFKIREHTLRRVPYMLVC   64 (110)
T ss_dssp             SCEEEEESSHH-HHHHHHHHHHHHHTTTCCEEEECCS----SCHHHHHHHHHHTTCSEEEEE
T ss_pred             ceEEEEeccHH-HHHHHHHHHHHHHHhhccccccCCc----cchhHHHHHHHHcCCCEEEEE
Confidence            55655432443 3468999999999999999999753    445545544433 35555544

>d1nj1a1 c.51.1.1 (A:284-410) Prolyl-tRNA synthetase (ProRS) domain {Arhaeon (Methanothermobacter thermautotrophicus) [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: Anticodon-binding domain-like
superfamily: Class II aaRS ABD-related
family: Anticodon-binding domain of Class II aaRS
domain: Prolyl-tRNA synthetase (ProRS) domain
species: Arhaeon (Methanothermobacter thermautotrophicus) [TaxId: 145262]

Probab=90.55  E-value=0.064  Score=31.17  Aligned_cols=31  Identities=13%  Similarity=0.222  Sum_probs=25.0

Q ss_pred             hchHHHHHHHHhcCCcceeecccccCCCCCC
Q 035104           25 DNFLSHLVEALRQKKIKSFIDNEELSRGDGI   55 (73)
Q Consensus        25 ~~f~~~L~~~L~~~gi~~f~D~~~l~~G~~i   55 (73)
                      ..++..|+..|++.||+|.+|+++...|..+
T Consensus        29 ~~~a~~l~~~L~~~gi~v~~D~r~~~~g~K~   59 (127)
T d1nj1a1          29 MEACRELRSRLEAAGFRVHLDDRDIRAGRKY   59 (127)
T ss_dssp             HHHHHHHHHHHHTTTCCEEECCCSSCHHHHH
T ss_pred             HHHHHHHHHHHHhcCCceEEEeccchHHHHH
Confidence            4689999999999999999998754444443

>d1dlja3 c.26.3.1 (A:295-402) UDP-glucose dehydrogenase (UDPGDH), C-terminal (UDP-binding) domain {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: UDP-glucose/GDP-mannose dehydrogenase C-terminal domain
family: UDP-glucose/GDP-mannose dehydrogenase C-terminal domain
domain: UDP-glucose dehydrogenase (UDPGDH), C-terminal (UDP-binding) domain
species: Streptococcus pyogenes [TaxId: 1314]

Probab=88.93  E-value=0.24  Score=28.00  Aligned_cols=50  Identities=22%  Similarity=0.314  Sum_probs=37.2

Q ss_pred             ccchhchHHHHHHHHhcCCcceeeccccc-----CCCCCCcHHHHHHHhhcceEE
Q 035104           21 EDTRDNFLSHLVEALRQKKIKSFIDNEEL-----SRGDGISPSLLKAIKESKISV   70 (73)
Q Consensus        21 ~D~r~~f~~~L~~~L~~~gi~~f~D~~~l-----~~G~~i~~~i~~aI~~Sri~I   70 (73)
                      .|+|.+=+-.|.+.|.+.|.++.+-|--+     +.+..+...+.++++.|.+.|
T Consensus        30 dD~R~Sp~i~ii~~L~~~g~~v~iyDP~v~~~~~~~~~~~~~~l~~~~~~sDiII   84 (108)
T d1dlja3          30 DNFRESAIKDVIDILKSKDIKIIIYEPMLNKLESEDQSVLVNDLENFKKQANIIV   84 (108)
T ss_dssp             SCCTTCHHHHHHHHHHTSSCEEEEECTTCSCCCTTCCSEECCCHHHHHHHCSEEE
T ss_pred             cchhhhhHHHHHHHHhccccceeeecCCcChhHhccCCEEEeCHHHHHhhCCEEE
Confidence            58899999999999999999988743222     233334557888999998644

>d1hc7a1 c.51.1.1 (A:277-403) Prolyl-tRNA synthetase (ProRS) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: Anticodon-binding domain-like
superfamily: Class II aaRS ABD-related
family: Anticodon-binding domain of Class II aaRS
domain: Prolyl-tRNA synthetase (ProRS) domain
species: Thermus thermophilus [TaxId: 274]

Probab=87.43  E-value=0.62  Score=26.72  Aligned_cols=23  Identities=17%  Similarity=0.313  Sum_probs=20.9

Q ss_pred             chHHHHHHHHhcCCcceeecccc
Q 035104           26 NFLSHLVEALRQKKIKSFIDNEE   48 (73)
Q Consensus        26 ~f~~~L~~~L~~~gi~~f~D~~~   48 (73)
                      .++..||..|...||++.+|++.
T Consensus        30 ~~a~~i~~~L~~~girv~~Dd~~   52 (127)
T d1hc7a1          30 EAAQGLRQALLAQGLRVHLDDRD   52 (127)
T ss_dssp             HHHHHHHHHHHHTTCCEEECCCS
T ss_pred             HHHHHHHHHHHHcCCeeEEeccc
Confidence            68999999999999999999763

>d2f62a1 c.23.14.1 (A:9-160) Nucleoside 2-deoxyribosyltransferase {Trypanosoma brucei [TaxId: 5691]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: N-(deoxy)ribosyltransferase-like
family: N-deoxyribosyltransferase
domain: Nucleoside 2-deoxyribosyltransferase
species: Trypanosoma brucei [TaxId: 5691]

Probab=85.27  E-value=0.55  Score=28.22  Aligned_cols=52  Identities=15%  Similarity=0.307  Sum_probs=38.8

Q ss_pred             cchhchHHHHHHHHhcCCcceeec-ccccCCCCCCcHHHHHHHhhcceEEEEC
Q 035104           22 DTRDNFLSHLVEALRQKKIKSFID-NEELSRGDGISPSLLKAIKESKISVIIF   73 (73)
Q Consensus        22 D~r~~f~~~L~~~L~~~gi~~f~D-~~~l~~G~~i~~~i~~aI~~Sri~IvVf   73 (73)
                      |....+...+.+.|++.|+.+|.= +.+.++...|...-++.|++|.+.|+++
T Consensus        15 d~~~~~~~~i~~~l~~~g~~~~~P~d~~~~~~~~If~~d~~~i~~~D~VIA~L   67 (152)
T d2f62a1          15 DMGASYYNKVRELLKKENVMPLIPTDNEATEALDIRQKNIQMIKDCDAVIADL   67 (152)
T ss_dssp             TTTHHHHHHHHHHHHTTTCEEECTTTTCCSSHHHHHHHHHHHHHHCSEEEEEC
T ss_pred             HHHHHHHHHHHHHHHHCCCEEeccccccchhHHHHHHHHHHHHHhCCEEEEEc
Confidence            334468888999999999999862 2234444557777789999999999864

>d1h4vb1 c.51.1.1 (B:326-421) Histidyl-tRNA synthetase (HisRS), C-terminal domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: Anticodon-binding domain-like
superfamily: Class II aaRS ABD-related
family: Anticodon-binding domain of Class II aaRS
domain: Histidyl-tRNA synthetase (HisRS), C-terminal domain
species: Thermus thermophilus [TaxId: 274]

Probab=82.67  E-value=1.9  Score=23.11  Aligned_cols=57  Identities=19%  Similarity=0.128  Sum_probs=38.4

Q ss_pred             CcccEEeeceeccchhchHHHHHHHHhcCCcceeecccccCCCCCCcHHHHHHHh-hcceEEEE
Q 035104           10 CRYDVFLSFRGEDTRDNFLSHLVEALRQKKIKSFIDNEELSRGDGISPSLLKAIK-ESKISVII   72 (73)
Q Consensus        10 ~~ydVFiSfrg~D~r~~f~~~L~~~L~~~gi~~f~D~~~l~~G~~i~~~i~~aI~-~Sri~IvV   72 (73)
                      ..+||||---+++. ...+-.|...|+ +|+++.+|..    +.++...+-.|-+ +.+.+|+|
T Consensus         2 ~~pdv~iv~~~~~~-~~~a~~i~~~LR-~~~~~~~~~~----~~~l~kq~k~A~~~~~~~~iii   59 (96)
T d1h4vb1           2 KGPDLYLIPLTEEA-VAEAFYLAEALR-PRLRAEYALA----PRKPAKGLEEALKRGAAFAGFL   59 (96)
T ss_dssp             CCCSEEEEESSHHH-HHHHHHHHHHHT-TTSCEEECSS----CCCHHHHHHHHHHTTCSEEEEE
T ss_pred             CCCEEEEEEcCHHH-HHHHHHHHHHHH-cCceEEEECC----CCCHHHHHHHHHHcCCCEEEEe
Confidence            35789888777654 467788999995 6999988753    4566656555543 34555554

>d1g5ha1 c.51.1.1 (A:343-469) The aaRS-like accessory subunit of mitochondrial polymerase gamma, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: Anticodon-binding domain-like
superfamily: Class II aaRS ABD-related
family: Anticodon-binding domain of Class II aaRS
domain: The aaRS-like accessory subunit of mitochondrial polymerase gamma, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=81.28  E-value=0.16  Score=29.41  Aligned_cols=35  Identities=14%  Similarity=0.084  Sum_probs=24.4

Q ss_pred             cccEEeece--eccchhchHHHHHHHHhcCCcceeec
Q 035104           11 RYDVFLSFR--GEDTRDNFLSHLVEALRQKKIKSFID   45 (73)
Q Consensus        11 ~ydVFiSfr--g~D~r~~f~~~L~~~L~~~gi~~f~D   45 (73)
                      +|+|-|---  +.+.-..++..|+..|++.||.++++
T Consensus        12 P~qV~Ii~~~~~~~e~~~~a~~l~~~L~~~gi~v~~~   48 (127)
T d1g5ha1          12 PIKVALDVGKGPTVELRQVCQGLLNELLENGISVWPG   48 (127)
T ss_dssp             SCCEEEEECSSCHHHHHHHHHHHHHHHHHTTCCEEEG
T ss_pred             CceEEEEecCCCCHHHHHHHHHHHHHHHHhcCceeee
Confidence            466655432  22334467899999999999999754

>d1a9xa2 c.24.1.1 (A:936-1073) Carbamoyl phosphate synthetase, large subunit allosteric, C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Methylglyoxal synthase-like
superfamily: Methylglyoxal synthase-like
family: Carbamoyl phosphate synthetase, large subunit allosteric, C-terminal domain
domain: Carbamoyl phosphate synthetase, large subunit allosteric, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=80.92  E-value=1.3  Score=26.14  Aligned_cols=62  Identities=18%  Similarity=0.239  Sum_probs=40.0

Q ss_pred             CCcccEEeeceeccchhchHHHHHHHHhcCCcceee--------ccccc-----CCCCCCcHHHHHHHhhcceEEEE
Q 035104            9 SCRYDVFLSFRGEDTRDNFLSHLVEALRQKKIKSFI--------DNEEL-----SRGDGISPSLLKAIKESKISVII   72 (73)
Q Consensus         9 ~~~ydVFiSfrg~D~r~~f~~~L~~~L~~~gi~~f~--------D~~~l-----~~G~~i~~~i~~aI~~Sri~IvV   72 (73)
                      +.+=.||||-+..| +..++ .+.+.|.+.|++.|-        .+..+     .+...=.|.+.+.|++-+|.+||
T Consensus         5 p~~G~v~iSv~d~d-K~~~~-~~ak~l~~lGf~i~AT~GTa~~L~~~Gi~~~~v~ki~~~~p~i~d~i~~gkidlVI   79 (138)
T d1a9xa2           5 KKHGRALLSVREGD-KERVV-DLAAKLLKQGFELDATHGTAIVLGEAGINPRLVNKVHEGRPHIQDRIKNGEYTYII   79 (138)
T ss_dssp             CSSSEEEEECCGGG-GTTHH-HHHHHHHHTTCEEEECHHHHHHHHTTTCCCEECBCTTTCSSBHHHHHHHTCCSEEE
T ss_pred             CCCCEEEEEEehhh-hhHHH-HHHHHHHHCCCEEEecCchHHHHHHhccccccccccccccccHhHHHhcCCeEEEE
Confidence            34447999998877 45565 777777777777643        22111     11111135788899999998876